Citrus Sinensis ID: 041016

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------
Protein Sequence
MANLSLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCPEDVQPPPDS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHccccccccEEEccccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEccccEEEEEccccccccccccEEEccccEEEEcccccccccccccEEEccccccEEEccccccccccccEEEccccccEEccccccccccccEEEccccccEEEccccccccccEEEccccEEEEcccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccccHHHHHHcccccccccccccccccccEEEEEEEEEEcccccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccccEEEEEcccEEEcccccccEEccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEccccccEEEccHHHHcccccccEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHcccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccccccccccEEEEEccccccccccHHHHccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHccHHHHHHHHccccccccccccccEHEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHccccccccHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MANLSLLLATLLLSFSILnstclccpeDQKAALLEFKSLvlgdladnssADAMLGGLetwnsssdccrwemvrcrsrgpsqevtgldlnnlfpldsivtsVVLAPIFRIRSLMTLDLsynsmqgevpgtgfanltrltyldlkdnnlngsipsqlfnlrylefLDLSANAIEGKLSSRVAGLKNLkqlilddnliqgqipaeignltnlhkLSLRqnkfsggiplslLQLRKLETLDLQRnslsgeipedigTLANITILALSnnaltgaipqSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKslylggnklkwndnvsivpkcmltelslrscsvrgsiplwlstqteltfldlsenelegtypqwlselnlgtvilsdnmltgslppplfesrnlSVLVLSRnnfsgelpetigqSTSVMVLMLSsnnfsghvpkSISNIYRLLVLdlsnnsfsgefpafgsdslvghvdissnrfsgevpssFGVTILMLSLSenkfsgqlpqnlsnlsllqhldlhdnnltgefPAFLSQLSSLQVLNLRNTALegsitdglsnltslqildlsnnnllgkipssfgnlqgmidtpsilptlpeifsfpVEIQDLIVNWknskrglsskSLAIYSLMDlsnnqlsgeipsslgslkglKSLNLSYNqlqgnipstfgnlEILETLDLshnslsgkipQTFAKLQQLTSLYLsnnklsgripespqmdrqidpviyannsglcgmqiqvvcpedvqpppds
Flexible Loop (DISEMBL)
MANLSLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLsgripespqmdrQIDPVIYANNSGLCGMQIQVvcpedvqpppds
Low Complexity Region (SEG)
MANlslllatlllsfsilNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPqnlsnlsllqhldlhdnnlTGEFPAFlsqlsslqVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPsslgslkglkslnlsYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCPEDVQPPPDS
Disordered region (IsUnstruct)
***LSLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDL*****************GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLS*****************IDPVIYANNSGLCGMQIQVVCP*********
Disordered Region (DISOPRED)
**NLSLLLATLLLSFSILNSTCL**PEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDT*****TLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGM****************
Disordered Region (DISEMBL)
MANLSLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCPE********
Disordered Region (DISPRO)
*ANLSLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGD****SSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQVVC**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANLSLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCPEDVQPPPDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	757	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.858	0.622	0.327	5e-84
Q9C9H7	847	Receptor-like protein 12	no	no	0.936	0.837	0.329	1e-83
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.885	0.607	0.346	1e-81
Q9FL28	1173	LRR receptor-like serine/	no	no	0.805	0.520	0.328	3e-80
Q9LP24	1120	Probable leucine-rich rep	no	no	0.776	0.525	0.357	2e-79
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.886	0.537	0.329	6e-79
O49318	1124	Probable leucine-rich rep	no	no	0.896	0.604	0.320	2e-78
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.896	0.542	0.328	1e-76
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.821	0.521	0.323	2e-75
C0LGV1	1135	LRR receptor-like serine/	no	no	0.819	0.546	0.333	2e-74

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  313 bits (801), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 242/739 (32%), Positives = 360/739 (48%), Gaps = 89/739 (12%)

Query: 6   LLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSD 65
           LL+ +++LS S   S  +    ++  ALL++KS        N ++ + L      N+SS 
Sbjct: 31  LLIISIVLSCSFAVSATV----EEANALLKWKSTF-----TNQTSSSKLSSWVNPNTSSF 81

Query: 66  CCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGE 125
           C  W  V C                                  + S++ L+L+   ++G 
Sbjct: 82  CTSWYGVACS---------------------------------LGSIIRLNLTNTGIEGT 108

Query: 126 VPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL 185
                F++L  LT++DL  N  +G+I         LE+ DLS N + G++   +  L NL
Sbjct: 109 FEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNL 168

Query: 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSG 245
             L L +N + G IP+EIG LT + ++++  N  +G IP S   L KL  L L  NSLSG
Sbjct: 169 DTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNLYLFINSLSG 228

Query: 246 EIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGM 305
            IP +IG L N+  L L  N LTG IP S  N+  +  L +  N LSGEI   + ++  +
Sbjct: 229 SIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTAL 288

Query: 306 KSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEG 365
            +L L  NKL      ++     L  L L    + GSIP  L     +  L++SEN+L G
Sbjct: 289 DTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTG 348

Query: 366 TYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSV 424
             P    +L  L  + L DN L+G +PP +  S  L+VL L  NNF+G LP+TI +   +
Sbjct: 349 PVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKL 408

Query: 425 MVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEF-PAFGSDSLVGHVDISSNRFSG 483
             L L  N+F G VPKS+ +   L+ +    NSFSG+   AFG    +  +D+S+N F G
Sbjct: 409 ENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHG 468

Query: 484 EVPSSFGVT--ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSL 541
           ++ +++  +  ++   LS N  +G +P  + N++ L  LDL  N +TGE P  +S ++ +
Sbjct: 469 QLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRI 528

Query: 542 QVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE 601
             L L    L G I  G+  LT+L+ LDLS+N    +IP +  N             LP 
Sbjct: 529 SKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNN-------------LPR 575

Query: 602 IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS 661
           ++                              M+LS N L   IP  L  L  L+ L+LS
Sbjct: 576 LY-----------------------------YMNLSRNDLDQTIPEGLTKLSQLQMLDLS 606

Query: 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP 721
           YNQL G I S F +L+ LE LDLSHN+LSG+IP +F  +  LT + +S+N L G IP++ 
Sbjct: 607 YNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNA 666

Query: 722 QMDRQIDPVIYANNSGLCG 740
              R   P  +  N  LCG
Sbjct: 667 AF-RNAPPDAFEGNKDLCG 684

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  311 bits (796), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 254/772 (32%), Positives = 385/772 (49%), Gaps = 63/772 (8%)

Query: 12  LLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEM 71
           LL  S+ +S+   C +DQ+ ALLEF+    G+   N+S   M      WN S+DCC W  
Sbjct: 21  LLVHSLASSSPHFCRDDQRDALLEFR----GEFPINASWHIMNQWRGPWNKSTDCCLWNG 76

Query: 72  VRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLS------------- 118
           V C  +  S +V  LD+ N F  + + T+   + +F+++ L  LDL+             
Sbjct: 77  VTCNDK--SGQVISLDIPNTFLNNYLKTN---SSLFKLQYLRHLDLTNCNLYGEIPSSLG 131

Query: 119 -----------YNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLS 167
                      +N   GE+P +   NL +L +L L +N L G IPS L NL  L  L+L 
Sbjct: 132 NLSHLTLVNLYFNKFVGEIPAS-IGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELF 190

Query: 168 ANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSL 227
           +N + GK+   +  LK L+ L L  N + G+IP+ +GNL+NL  L L  N+  G +P S+
Sbjct: 191 SNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASI 250

Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
             L +L  +  + NSLSG IP     L  ++I  LS+N  T   P  +     L    + 
Sbjct: 251 GNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVS 310

Query: 288 SNVLSGEISTWLFDLQGMKSLYLGGNKLKWN-DNVSIVPKCMLTELSLRSCSVRGSIPLW 346
            N  SG     L  +  ++S+YL  N+     +  +      L +L L    + G IP  
Sbjct: 311 YNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPES 370

Query: 347 LSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVL 405
           +S    L  LD+S N   G  P  +S+L NL  + LS N L G +P  L+    L+ +VL
Sbjct: 371 ISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWR---LNTMVL 427

Query: 406 SRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAF 465
           S N+FS     T  +   +  L L+SN+F G +P  I  +  L  LDLSNN FSG  P+ 
Sbjct: 428 SHNSFSS-FENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSC 486

Query: 466 GSD--SLVGHVDISSNRFSGEVPSSF--GVTILMLSLSENKFSGQLPQNLSNLSLLQHLD 521
             +    +  +++  N FSG +P  F     ++ L +S N+  G+ P++L N   L+ ++
Sbjct: 487 IRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVN 546

Query: 522 LHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNL--TSLQILDLSNNNLLGKI 579
           +  N +   FP++L  L SL VLNLR+    G +    +++   SL+I+D+S+NN  G +
Sbjct: 547 VESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTL 606

Query: 580 -PSSFGNLQGMID-TPSILPTLPEIF----SFPVEIQDLIVNWKNSKRGLSSKSLAI--- 630
            P  F N + M   T  +   + E +    S+  E++  +VN     +G+      I   
Sbjct: 607 PPYYFSNWKDMTTLTEEMDQYMTEFWRYADSYYHEME--MVN-----KGVDMSFERIRRD 659

Query: 631 YSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS 690
           +  +D S N+++G IP SLG LK L+ LNLS N     IP    NL  LETLD+S N LS
Sbjct: 660 FRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLS 719

Query: 691 GKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQ 742
           G+IPQ  A L  L+ +  S+N L G +P   Q  RQ     + +N GL G++
Sbjct: 720 GQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQ-KCSSFLDNPGLYGLE 770

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  305 bits (780), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 247/712 (34%), Positives = 348/712 (48%), Gaps = 42/712 (5%)

Query: 57  LETWNSSSDC-CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAP-IFRIRSLMT 114
           L  WNS+    C W  V C +     EV  L+L+      S+V S  L+P I  +  L  
Sbjct: 48  LRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLS------SMVLSGKLSPSIGGLVHLKQ 101

Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK 174
           LDLSYN + G++P     N + L  L L +N  +G IP ++  L  LE L +  N I G 
Sbjct: 102 LDLSYNGLSGKIPKE-IGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGS 160

Query: 175 LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLE 234
           L   +  L +L QL+   N I GQ+P  IGNL  L      QN  SG +P  +     L 
Sbjct: 161 LPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLV 220

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
            L L +N LSGE+P++IG L  ++ + L  N  +G IP+ I N T L TL L  N L G 
Sbjct: 221 MLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGP 280

Query: 295 ISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELT 354
           I   L DLQ ++ LYL  N L       I       E+     ++ G IPL L     L 
Sbjct: 281 IPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLE 340

Query: 355 FLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGE 413
            L L EN+L GT P  LS L NL  + LS N LTG +P      R L +L L +N+ SG 
Sbjct: 341 LLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGT 400

Query: 414 LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVG 472
           +P  +G  + + VL +S N+ SG +P  +     +++L+L  N+ SG  P    +   + 
Sbjct: 401 IPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLV 460

Query: 473 HVDISSNRFSGEVPSSF--GVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE 530
            + ++ N   G  PS+    V +  + L +N+F G +P+ + N S LQ L L DN  TGE
Sbjct: 461 QLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGE 520

Query: 531 FPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMI 590
            P  +  LS L  LN+ +  L G +   + N   LQ LD+  NN  G +PS  G+L    
Sbjct: 521 LPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSL---- 576

Query: 591 DTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLG 650
                         + +E+  L  N  +    ++  +L+  + + +  N  +G IP  LG
Sbjct: 577 --------------YQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELG 622

Query: 651 SLKGLK-SLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLS 709
           SL GL+ +LNLSYN+L G IP    NL +LE L L++N+LSG+IP +FA L  L     S
Sbjct: 623 SLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFS 682

Query: 710 NNKLSGRIPESPQMDRQIDPVIYANNSGLCG------MQIQVVCPEDVQPPP 755
            N L+G IP    + R I    +  N GLCG      +Q Q   P      P
Sbjct: 683 YNSLTGPIP----LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQSTGKP 730

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  300 bits (768), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 226/687 (32%), Positives = 340/687 (49%), Gaps = 77/687 (11%)

Query: 87  DLNNLFPLD---SIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLK 143
           +L N+F LD   ++++  V   I +  SL+ +   YN++ G++P     +L  L      
Sbjct: 142 ELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPEC-LGDLVHLQMFVAA 200

Query: 144 DNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI 203
            N+L GSIP  +  L  L  LDLS N + GK+      L NL+ L+L +NL++G IPAEI
Sbjct: 201 GNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEI 260

Query: 204 GNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALS 263
           GN ++L +L L  N+ +G IP  L  L +L+ L + +N L+  IP  +  L  +T L LS
Sbjct: 261 GNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLS 320

Query: 264 NNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSI 323
            N L G I + I  +  L  L L SN  +GE    + +L+ +  L +G N +       +
Sbjct: 321 ENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADL 380

Query: 324 VPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSD 383
                L  LS     + G IP  +S  T L  LDLS N++ G  P+    +NL  + +  
Sbjct: 381 GLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGR 440

Query: 384 NMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSIS 443
           N  TG +P  +F   NL  L ++ NN +G L   IG+   + +L +S N+ +G +P+ I 
Sbjct: 441 NHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIG 500

Query: 444 NIYRLLVLDLSNNSFSGEFPA-------------FGSD------------SLVGHVDISS 478
           N+  L +L L +N F+G  P              + +D             L+  +D+S+
Sbjct: 501 NLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSN 560

Query: 479 NRFSGEVPSSFGV--TILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA-FL 535
           N+FSG++P+ F    ++  LSL  NKF+G +P +L +LSLL   D+ DN LTG  P   L
Sbjct: 561 NKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELL 620

Query: 536 SQLSSLQV-LNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPS 594
           + L ++Q+ LN  N  L G+I   L  L  +Q +DLSNN   G IP S            
Sbjct: 621 ASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRS------------ 668

Query: 595 ILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL-GSLK 653
            L     +F+                             +D S N LSG IP  +   + 
Sbjct: 669 -LQACKNVFT-----------------------------LDFSQNNLSGHIPDEVFQGMD 698

Query: 654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
            + SLNLS N   G IP +FGN+  L +LDLS N+L+G+IP++ A L  L  L L++N L
Sbjct: 699 MIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNL 758

Query: 714 SGRIPESPQMDRQIDPVIYANNSGLCG 740
            G +PES    + I+      N+ LCG
Sbjct: 759 KGHVPESGVF-KNINASDLMGNTDLCG 784

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  297 bits (761), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 220/616 (35%), Positives = 331/616 (53%), Gaps = 28/616 (4%)

Query: 87  DLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN 146
           +L  L+   + +TSV+ + +  + S+  L LS N + G +P +   NL  L  L L +N 
Sbjct: 151 NLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSS-LGNLKNLMVLYLYENY 209

Query: 147 LNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNL 206
           L G IP +L N+  +  L LS N + G + S +  LKNL  L L +N + G IP EIGN+
Sbjct: 210 LTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNM 269

Query: 207 TNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA 266
            ++  L+L QNK +G IP SL  L+ L  L L +N L+G IP  +G + ++  L LSNN 
Sbjct: 270 ESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNK 329

Query: 267 LTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK 326
           LTG+IP S+ N+  L  L L  N L+G I   L +++ M  L L  NKL  +   S    
Sbjct: 330 LTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNL 389

Query: 327 CMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNM 385
             LT L L    + G IP  L     +  LDLS+N+L G+ P        L ++ L  N 
Sbjct: 390 KNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNH 449

Query: 386 LTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNI 445
           L+G++PP +  S +L+ L+L  NNF+G  PET+ +   +  + L  N+  G +PKS+ + 
Sbjct: 450 LSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDC 509

Query: 446 YRLLVLDLSNNSFSGE-FPAFGSDSLVGHVDISSNRFSGEVPSSFGVT--ILMLSLSENK 502
             L+      N F+G+ F AFG    +  +D S N+F GE+ S++  +  +  L +S N 
Sbjct: 510 KSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNN 569

Query: 503 FSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNL 562
            +G +P  + N++ L  LDL  NNL GE P  +  L++L  L L    L G +  GLS L
Sbjct: 570 ITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFL 629

Query: 563 TSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRG 622
           T+L+ LDLS+NN   +IP +F +                     +++ D+ ++ +N   G
Sbjct: 630 TNLESLDLSSNNFSSEIPQTFDSF--------------------LKLHDMNLS-RNKFDG 668

Query: 623 LSSK--SLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILE 680
              +   L   + +DLS+NQL GEIPS L SL+ L  L+LS+N L G IP+TF  +  L 
Sbjct: 669 SIPRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALT 728

Query: 681 TLDLSHNSLSGKIPQT 696
            +D+S+N L G +P T
Sbjct: 729 NVDISNNKLEGPLPDT 744

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  295 bits (756), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 270/819 (32%), Positives = 389/819 (47%), Gaps = 148/819 (18%)

Query: 57  LETWNSSS-DCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIF-RIRSLMT 114
           L  WNS + + C W  V C + G  + V  L+L  L    SI      +P F R  +L+ 
Sbjct: 47  LRQWNSDNINYCSWTGVTCDNTGLFR-VIALNLTGLGLTGSI------SPWFGRFDNLIH 99

Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF------------------ 156
           LDLS N++ G +P T  +NLT L  L L  N L G IPSQL                   
Sbjct: 100 LDLSSNNLVGPIP-TALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGD 158

Query: 157 ------NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLH 210
                 NL  L+ L L++  + G + S++  L  ++ LIL DN ++G IPAE+GN ++L 
Sbjct: 159 IPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLT 218

Query: 211 KLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGA 270
             +  +N  +G IP  L +L  LE L+L  NSL+GEIP  +G ++ +  L+L  N L G 
Sbjct: 219 VFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGL 278

Query: 271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK-CML 329
           IP+S+ ++  L TL L +N L+GEI    +++  +  L L  N L  +   SI      L
Sbjct: 279 IPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNL 338

Query: 330 TELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL--------------- 374
            +L L    + G IP+ LS    L  LDLS N L G+ P+ L EL               
Sbjct: 339 EQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEG 398

Query: 375 ----------NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSV 424
                     NL  ++L  N L G LP  +   R L VL L  N FSGE+P+ IG  TS+
Sbjct: 399 TLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSL 458

Query: 425 MVLMLSSNNFSGHVPKSIS------------------------NIYRLLVLDLSNNSFSG 460
            ++ +  N+F G +P SI                         N ++L +LDL++N  SG
Sbjct: 459 KMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSG 518

Query: 461 EFPA-FG-------------------SDSLVG-----HVDISSNRFSGEV-PSSFGVTIL 494
             P+ FG                    DSL+       +++S NR +G + P     + L
Sbjct: 519 SIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYL 578

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS 554
              ++ N F  ++P  L N   L  L L  N LTG+ P  L ++  L +L++ + AL G+
Sbjct: 579 SFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGT 638

Query: 555 ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGM----IDTPSILPTLP-EIF------ 603
           I   L     L  +DL+NN L G IP   G L  +    + +   + +LP E+F      
Sbjct: 639 IPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLL 698

Query: 604 -----------SFPVEIQDL-IVNWKNSKRGLSSKSL--------AIYSLMDLSNNQLSG 643
                      S P EI +L  +N  N  +   S SL         +Y L  LS N L+G
Sbjct: 699 VLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELR-LSRNSLTG 757

Query: 644 EIPSSLGSLKGLKS-LNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQ 702
           EIP  +G L+ L+S L+LSYN   G+IPST G L  LETLDLSHN L+G++P +   ++ 
Sbjct: 758 EIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKS 817

Query: 703 LTSLYLSNNKLSGRIPESPQMDRQIDPV-IYANNSGLCG 740
           L  L +S N L G++ +  Q  R   P   +  N+GLCG
Sbjct: 818 LGYLNVSFNNLGGKLKK--QFSRW--PADSFLGNTGLCG 852

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  293 bits (751), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 227/709 (32%), Positives = 353/709 (49%), Gaps = 30/709 (4%)

Query: 54  LGGLETWNSSSDC-CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAP-IFRIRS 111
           L  L  WN   +  C W  V C S+G S     L + +L  L S+  S +++P I  + +
Sbjct: 52  LNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSL-DLSSMNLSGIVSPSIGGLVN 110

Query: 112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAI 171
           L+ L+L+YN++ G++P     N ++L  + L +N   GSIP ++  L  L   ++  N +
Sbjct: 111 LVYLNLAYNALTGDIPRE-IGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNNKL 169

Query: 172 EGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLR 231
            G L   +  L NL++L+   N + G +P  +GNL  L      QN FSG IP  + +  
Sbjct: 170 SGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCL 229

Query: 232 KLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL 291
            L+ L L +N +SGE+P++IG L  +  + L  N  +G IP+ I N+T L TL L  N L
Sbjct: 230 NLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSL 289

Query: 292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT 351
            G I + + +++ +K LYL  N+L       +     + E+      + G IP+ LS  +
Sbjct: 290 VGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKIS 349

Query: 352 ELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNF 410
           EL  L L +N+L G  P  LS+L NL  + LS N LTG +PP      ++  L L  N+ 
Sbjct: 350 ELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSL 409

Query: 411 SGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP--AFGSD 468
           SG +P+ +G  + + V+  S N  SG +P  I     L++L+L +N   G  P       
Sbjct: 410 SGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCK 469

Query: 469 SLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN 526
           SL+  + +  NR +G+ P+     V +  + L +N+FSG LP  +     LQ L L  N 
Sbjct: 470 SLL-QLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQ 528

Query: 527 LTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNL 586
            +   P  +S+LS+L   N+ + +L G I   ++N   LQ LDLS N+ +G +P   G+L
Sbjct: 529 FSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSL 588

Query: 587 QGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIP 646
             +                  EI  L  N  +     +  +L   + + +  N  SG IP
Sbjct: 589 HQL------------------EILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIP 630

Query: 647 SSLGSLKGLK-SLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTS 705
             LG L  L+ ++NLSYN   G IP   GNL +L  L L++N LSG+IP TF  L  L  
Sbjct: 631 PQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLG 690

Query: 706 LYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCPEDVQPP 754
              S N L+G++P + Q+ + +    +  N GLCG  ++   P     P
Sbjct: 691 CNFSYNNLTGQLPHT-QIFQNMTLTSFLGNKGLCGGHLRSCDPSHSSWP 738

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  288 bits (738), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 256/780 (32%), Positives = 369/780 (47%), Gaps = 101/780 (12%)

Query: 1   MANLSLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETW 60
           M   S+LLA   L FS    +      D    LLE K+  + +  +          L  W
Sbjct: 1   MQQNSVLLALFFLCFSSGLGSGQPGQRDDLQTLLELKNSFITNPKEEDV-------LRDW 53

Query: 61  NSSS-DCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSY 119
           NS S   C W  V C  R    E+ GL+L+ L    SI  S     I R  +L+ +DLS 
Sbjct: 54  NSGSPSYCNWTGVTCGGR----EIIGLNLSGLGLTGSISPS-----IGRFNNLIHIDLSS 104

Query: 120 NSMQGEVPGTG------------------------FANLTRLTYLDLKDNNLNGSIPSQL 155
           N + G +P T                           +L  L  L L DN LNG+IP   
Sbjct: 105 NRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETF 164

Query: 156 FNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLR 215
            NL  L+ L L++  + G + SR   L  L+ LIL DN ++G IPAEIGN T+L   +  
Sbjct: 165 GNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAA 224

Query: 216 QNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSI 275
            N+ +G +P  L +L+ L+TL+L  NS SGEIP  +G L +I  L L  N L G IP+ +
Sbjct: 225 FNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRL 284

Query: 276 RNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLR 335
             +  L TL L SN L+G I    + +  ++ L L  N+L                    
Sbjct: 285 TELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLS------------------- 325

Query: 336 SCSVRGSIPLWL-STQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPP 393
                GS+P  + S  T L  L LSE +L G  P  +S   +L  + LS+N LTG +P  
Sbjct: 326 -----GSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDS 380

Query: 394 LFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDL 453
           LF+   L+ L L+ N+  G L  +I   T++    L  NN  G VPK I  + +L ++ L
Sbjct: 381 LFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYL 440

Query: 454 SNNSFSGEFPA-FGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPQN 510
             N FSGE P   G+ + +  +D   NR SGE+PSS G    +  L L EN+  G +P +
Sbjct: 441 YENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPAS 500

Query: 511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQIL-- 568
           L N   +  +DL DN L+G  P+    L++L++  + N +L+G++ D L NL +L  +  
Sbjct: 501 LGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINF 560

Query: 569 ---------------------DLSNNNLLGKIPSSFG---NLQGM-IDTPSILPTLPEIF 603
                                D++ N   G IP   G   NL  + +        +P  F
Sbjct: 561 SSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTF 620

Query: 604 SFPVEIQDLIVNWKNSKRGLSSKSLAI---YSLMDLSNNQLSGEIPSSLGSLKGLKSLNL 660
               E+  L ++ +NS  G+    L +    + +DL+NN LSG IP+ LG L  L  L L
Sbjct: 621 GKISELSLLDIS-RNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKL 679

Query: 661 SYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
           S N+  G++P+   +L  + TL L  NSL+G IPQ    LQ L +L L  N+LSG +P +
Sbjct: 680 SSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPST 739

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  284 bits (726), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 236/729 (32%), Positives = 340/729 (46%), Gaps = 107/729 (14%)

Query: 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFL 164
           I+ ++ L TLDLS NS+ G +P    + L +L YLDL DN+ +GS+P   F +L  L  L
Sbjct: 109 IWNLKHLQTLDLSGNSLTGLLPRL-LSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSL 167

Query: 165 DLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP 224
           D+S N++ G++   +  L NL  L +  N   GQIP+EIGN++ L   +     F+G +P
Sbjct: 168 DVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLP 227

Query: 225 LSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTL 284
             + +L+ L  LDL  N L   IP+  G L N++IL L +  L G IP  + N   L +L
Sbjct: 228 KEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSL 287

Query: 285 RL-----------------------DSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNV 321
            L                       + N LSG + +W+   + + SL L  N+       
Sbjct: 288 MLSFNSLSGPLPLELSEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGEIPH 347

Query: 322 SIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLS---------------------- 359
            I    ML  LSL S  + GSIP  L     L  +DLS                      
Sbjct: 348 EIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTIEEVFDGCSSLGELL 407

Query: 360 --ENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPET 417
              N++ G+ P+ L +L L  + L  N  TG +P  L++S NL     S N   G LP  
Sbjct: 408 LTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAE 467

Query: 418 IGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA------------F 465
           IG + S+  L+LS N  +G +P+ I  +  L VL+L+ N F G+ P              
Sbjct: 468 IGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDL 527

Query: 466 GSDSLVGHVD-------------ISSNRFSGEVPS--------------SFGVTILMLSL 498
           GS++L G +              +S N  SG +PS              SF     +  L
Sbjct: 528 GSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDL 587

Query: 499 SENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG 558
           S N+ SG +P+ L    +L  + L +N+L+GE PA LS+L++L +L+L   AL GSI   
Sbjct: 588 SYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKE 647

Query: 559 LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKN 618
           + N   LQ L+L+NN L G IP SFG L  ++                    +L  N  +
Sbjct: 648 MGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKL------------------NLTKNKLD 689

Query: 619 SKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEI 678
                S  +L   + MDLS N LSGE+ S L +++ L  L +  N+  G IPS  GNL  
Sbjct: 690 GPVPASLGNLKELTHMDLSFNNLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQ 749

Query: 679 LETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGL 738
           LE LD+S N LSG+IP     L  L  L L+ N L G +P S  + +     + + N  L
Sbjct: 750 LEYLDVSENLLSGEIPTKICGLPNLEFLNLAKNNLRGEVP-SDGVCQDPSKALLSGNKEL 808

Query: 739 CGMQIQVVC 747
           CG  +   C
Sbjct: 809 CGRVVGSDC 817

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  280 bits (717), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 232/696 (33%), Positives = 356/696 (51%), Gaps = 76/696 (10%)

Query: 60  WN-SSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLS 118
           WN S SD C+W  + C S            +N    +  V SV LA  F           
Sbjct: 61  WNPSDSDPCQWPYITCSSS-----------DNKLVTEINVVSVQLALPFP---------- 99

Query: 119 YNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSR 178
                        ++ T L  L + + NL G+I S++ +   L  +DLS+N++ G++ S 
Sbjct: 100 ----------PNISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSS 149

Query: 179 VAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDL 238
           +  LKNL++L L+ N + G+IP E+G+  +L  L +  N  S  +PL L ++  LE++  
Sbjct: 150 LGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRA 209

Query: 239 QRNS-LSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEIST 297
             NS LSG+IPE+IG   N+ +L L+   ++G++P S+  ++KL +L + S +LSGEI  
Sbjct: 210 GGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPK 269

Query: 298 WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM-----LTELSLRSCSVRGSIPLWLSTQTE 352
            L +   + +L+L  N L        +PK +     L ++ L   ++ G IP  +     
Sbjct: 270 ELGNCSELINLFLYDNDLS-----GTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKS 324

Query: 353 LTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFS 411
           L  +DLS N   GT P+    L NL  ++LS N +TGS+P  L     L    +  N  S
Sbjct: 325 LNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQIS 384

Query: 412 GELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA--FGSDS 469
           G +P  IG    + + +   N   G++P  ++    L  LDLS N  +G  PA  F   +
Sbjct: 385 GLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRN 444

Query: 470 LVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNL 527
           L   + I SN  SG +P   G   +++ L L  N+ +G++P+ +  L  L  LDL +NNL
Sbjct: 445 LTKLLLI-SNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNL 503

Query: 528 TGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQ 587
           +G  P  +S    LQ+LNL N  L+G +   LS+LT LQ+LD+S+N+L GKIP S G+L 
Sbjct: 504 SGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHL- 562

Query: 588 GMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYS---LMDLSNNQLSGE 644
                              + +  LI++ KNS  G    SL   +   L+DLS+N +SG 
Sbjct: 563 -------------------ISLNRLILS-KNSFNGEIPSSLGHCTNLQLLDLSSNNISGT 602

Query: 645 IPSSLGSLKGLK-SLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQL 703
           IP  L  ++ L  +LNLS+N L G IP     L  L  LD+SHN LSG +    + L+ L
Sbjct: 603 IPEELFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDL-SALSGLENL 661

Query: 704 TSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLC 739
            SL +S+N+ SG +P+S ++ RQ+       N+GLC
Sbjct: 662 VSLNISHNRFSGYLPDS-KVFRQLIGAEMEGNNGLC 696

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	757
225435788	814	PREDICTED: LRR receptor-like serine/thre	0.988	0.918	0.591	0.0
224052865	805	predicted protein [Populus trichocarpa]	0.966	0.909	0.577	0.0
255564832	816	serine-threonine protein kinase, plant-t	0.963	0.893	0.577	0.0
147789084	793	hypothetical protein VITISV_041017 [Viti	0.960	0.916	0.572	0.0
297809603	812	hypothetical protein ARALYDRAFT_490081 [	0.960	0.895	0.553	0.0
42566300	811	receptor like protein 46 [Arabidopsis th	0.957	0.893	0.546	0.0
359478805	827	PREDICTED: LRR receptor-like serine/thre	0.959	0.877	0.547	0.0
449532453	845	PREDICTED: LRR receptor-like serine/thre	0.957	0.857	0.530	0.0
449452781	842	PREDICTED: LRR receptor-like serine/thre	0.957	0.861	0.529	0.0
3377849	766	similar to receptor protein kinases [Ara	0.898	0.887	0.496	0.0

>gi|225435788|ref|XP_002283740.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Vitis vinifera]

 Score =  827 bits (2136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/761 (59%), Positives = 585/761 (76%), Gaps = 13/761 (1%)

Query: 1   MANLSLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETW 60
           MANL LLL ++ LS  IL   CL CPE QK ALL+FKS +L   A NSS ++   GLE+W
Sbjct: 1   MANLGLLLGSIFLSIFIL--PCLSCPEYQKQALLQFKSSIL---ASNSSFNSSTFGLESW 55

Query: 61  NSSSDCCRWEMVRCRS--RGPSQEVTGLDLNNLF---PLDSIVTSVVLAPIFRIRSLMTL 115
           NSSS CC+W+ V C S     S+ VTGL L+ L+   P    + S VLAP+F+IRSLM L
Sbjct: 56  NSSSSCCQWDQVTCSSPSNSTSRVVTGLYLSALYTMLPPRPQLPSTVLAPLFQIRSLMLL 115

Query: 116 DLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL 175
           D+S N++ GE+  +GFANL++L +LD+  NN N  IP   F+LR+L++LDL+ N++ G L
Sbjct: 116 DISSNNIYGEI-SSGFANLSKLVHLDMMLNNFNDFIPPHFFHLRHLQYLDLTNNSLHGSL 174

Query: 176 SSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLET 235
           S  V  L+NLK L LD+N + G++P EIGNLT L +LSL  N+FS GIP S+L L++L+T
Sbjct: 175 SPDVGSLQNLKVLKLDENFLSGKVPEEIGNLTKLQQLSLSSNQFSDGIPSSVLYLKELQT 234

Query: 236 LDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEI 295
           LDL  N LS EIP DIG L NI+ L L++N LTG IP SI+ ++KL TL L++N+L+GEI
Sbjct: 235 LDLSYNMLSMEIPIDIGNLPNISTLTLNDNQLTGGIPSSIQKLSKLETLHLENNLLTGEI 294

Query: 296 STWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTF 355
           S+WLFDL+G+K+LYLG N L WN++V IVPKC+L+ LSL+SC V G IP W+STQ  L F
Sbjct: 295 SSWLFDLKGLKNLYLGSNSLTWNNSVKIVPKCILSRLSLKSCGVAGEIPEWISTQKTLDF 354

Query: 356 LDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELP 415
           LDLSENEL+GT+PQWL+E+++G++ILSDN LTGSLPP LF+S +LSVL LSRNNFSGELP
Sbjct: 355 LDLSENELQGTFPQWLAEMDVGSIILSDNKLTGSLPPVLFQSLSLSVLALSRNNFSGELP 414

Query: 416 ETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE-FPAFGSDSLVGHV 474
           + IG +  +M+LML+ NNFSG +P+SIS IYRLL+LDLS+N FSG+ FP F  +  +  +
Sbjct: 415 KNIGDAGGLMILMLAENNFSGPIPQSISQIYRLLLLDLSSNRFSGKTFPIFDPEGFLAFI 474

Query: 475 DISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAF 534
           D SSN FSGE+P SF    ++L+L  NKFSG LP NLS+LS L+HLDLHDNNL G+ P  
Sbjct: 475 DFSSNEFSGEIPMSFSQETMILALGGNKFSGSLPSNLSSLSKLEHLDLHDNNLKGDLPES 534

Query: 535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPS 594
           L Q+S+LQVL+LRN +L+GSI + +SNL+S++ILD+SNNNL+G+IP   GNL GMI+TP+
Sbjct: 535 LFQISTLQVLSLRNNSLQGSIPETISNLSSVRILDVSNNNLIGEIPKGCGNLVGMIETPN 594

Query: 595 ILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKG 654
           +L ++ ++F+F +E +DLIVNWK SK+GLSS+ L IY+L DLS N LSGEIP+S+G+LK 
Sbjct: 595 LLSSVSDVFTFSIEFKDLIVNWKKSKQGLSSRHLDIYTLFDLSKNHLSGEIPASIGALKA 654

Query: 655 LKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           LK LN+SYN+L G IP +FG+LE +E+LDLSHN LSG IPQT  KLQQL++L +SNN+L+
Sbjct: 655 LKLLNVSYNKLSGKIPVSFGDLENVESLDLSHNQLSGSIPQTLVKLQQLSNLDVSNNQLT 714

Query: 715 GRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCPEDVQPPP 755
           GRIP   QM    DP+ YANNSGLCGMQI+V CPED +PPP
Sbjct: 715 GRIPVGGQMSTMADPIYYANNSGLCGMQIRVPCPED-EPPP 754

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052865|ref|XP_002297619.1| predicted protein [Populus trichocarpa] gi|222844877|gb|EEE82424.1| predicted protein [Populus trichocarpa]

 Score =  796 bits (2056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/736 (57%), Positives = 552/736 (75%), Gaps = 4/736 (0%)

Query: 21  TCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPS 80
           T LCCP+DQK ALL FKS +L  +  NSS    L  L++W+ SSDCC W+MV C SR  S
Sbjct: 17  TSLCCPDDQKLALLHFKSSLLDSI--NSSTQYSLSSLDSWDDSSDCCHWDMVTCSSRSNS 74

Query: 81  QEVTGLDLNNLFPLDSIVT--SVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLT 138
           ++V  L L++L   +  +   S+VL+P+  I+SLM LD+S N + GE+P   F+NL++L 
Sbjct: 75  RKVVALHLDSLVLAEQPIPIPSMVLSPLSLIKSLMLLDISSNYIVGEIPPGVFSNLSKLV 134

Query: 139 YLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQ 198
           +LD+  NN +GSIP Q+F+LRYL++LD+S+N ++G +S  V  L NL+ L LDDN + G 
Sbjct: 135 HLDMMQNNFSGSIPPQIFHLRYLQYLDMSSNLLKGVISKEVGSLLNLRVLKLDDNSLGGY 194

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT 258
           IP EIGNLT L +L+LR N F G IP S+L L++LE L+L+ NSLS EIP+DIG L N+T
Sbjct: 195 IPEEIGNLTKLQQLNLRSNNFFGMIPSSVLFLKELEILELRDNSLSVEIPKDIGDLTNLT 254

Query: 259 ILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWN 318
            LALS N +TG I  SI+ + KL TLRL++NVLSG I TWLFD++ +K L+LGGN L WN
Sbjct: 255 TLALSGNRMTGGITSSIQKLHKLETLRLENNVLSGGIPTWLFDIKSLKDLFLGGNNLTWN 314

Query: 319 DNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGT 378
           + V++ PKCML +LSL SC + G IP W+STQ +L FLDLS N+LEG +P+W++E+++G+
Sbjct: 315 NTVNLEPKCMLAQLSLSSCRLAGRIPDWISTQKDLVFLDLSRNKLEGPFPEWVAEMDIGS 374

Query: 379 VILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHV 438
           + LSDN LTGSLPP LF S +LSVL LSRN+FSGELP  IG +  VM+L+ S NNFSG +
Sbjct: 375 IFLSDNNLTGSLPPRLFRSESLSVLALSRNSFSGELPSNIGDAIKVMILVFSGNNFSGQI 434

Query: 439 PKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSL 498
           PKSIS IYRLL+LDLS N FSG  P F  ++L+ ++D S N FSGE+P  F     +LSL
Sbjct: 435 PKSISKIYRLLLLDLSGNRFSGNIPDFRPNALLAYIDFSYNEFSGEIPVIFSQETRILSL 494

Query: 499 SENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG 558
            +N FSG+LP NL++L+ L+HLDLHDN + GE P  LSQ+S+LQVLNLRN  LEGSI   
Sbjct: 495 GKNMFSGKLPSNLTDLNNLEHLDLHDNRIAGELPMSLSQMSTLQVLNLRNNTLEGSIPST 554

Query: 559 LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKN 618
           ++NLT+L+ILD+S+NNL G+IP+  G+L GMIDTP+ L ++ ++F+FP+E  DLIVNWK 
Sbjct: 555 ITNLTNLRILDVSSNNLSGEIPAKLGDLVGMIDTPNTLRSVSDMFTFPIEFSDLIVNWKK 614

Query: 619 SKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEI 678
           SK+GLSS SL IYSL+DLS NQLSG++P+SLG LKGLK LN+SYN L G IP+TFGNLE 
Sbjct: 615 SKQGLSSHSLEIYSLLDLSKNQLSGQLPASLGHLKGLKLLNISYNHLSGKIPATFGNLES 674

Query: 679 LETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGL 738
           LE+LDLS N LSG IP+T +KLQ+LT+L +SNNKL G+IP   QMD   DP  YANNSGL
Sbjct: 675 LESLDLSRNRLSGSIPRTLSKLQELTTLDVSNNKLEGQIPVGGQMDTMNDPNSYANNSGL 734

Query: 739 CGMQIQVVCPEDVQPP 754
           CG QI + CP D + P
Sbjct: 735 CGFQILLPCPPDPEQP 750

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564832|ref|XP_002523410.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223537360|gb|EEF38989.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/743 (57%), Positives = 550/743 (74%), Gaps = 14/743 (1%)

Query: 23  LCCPEDQKAALLEFKSLVLGDL---ADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGP 79
           L CP+D K ALL+FKSLV+  L   + +SS+D  L GL++W S+SDCC+WEMV C++   
Sbjct: 22  LSCPDDHKQALLQFKSLVIRTLNSTSSSSSSDYSLFGLDSWTSASDCCQWEMVGCKANST 81

Query: 80  SQEVTGLDLN------NLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFAN 133
           S+ VT L ++      N  P    + S VL+P+FRIRSLM LD+S N + GE+P T F N
Sbjct: 82  SRSVTSLSVSSLVGSVNPIP----IPSSVLSPLFRIRSLMFLDISSNHILGEIPATMFTN 137

Query: 134 LTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN 193
           L+ L +L++  NN +G IP Q+F L+YL++LD+S+N + G L   +  LK L+ + LDDN
Sbjct: 138 LSMLVHLEMMLNNFSGPIPPQIFQLKYLQYLDMSSNLLTGTLGKEIGSLKKLRVIKLDDN 197

Query: 194 LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT 253
            I+G IP EIGNLT L +LSLR N F G IP S+L L++L+ L+L  N+LS EIP +IG 
Sbjct: 198 SIEGIIPQEIGNLTYLQQLSLRGNNFIGRIPSSVLFLKELQVLELSDNALSMEIPANIGD 257

Query: 254 LANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN 313
           L N+T LALSNN +TG IP SI+ ++KL  LRL  N L+G I TWLFD++ +  L+LGGN
Sbjct: 258 LTNLTTLALSNNRITGGIPTSIQKLSKLKVLRLQDNFLAGRIPTWLFDIKSLAELFLGGN 317

Query: 314 KLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSE 373
            L W+++V +VP+C LT+LSL++CS+RG IP W+STQT L  LDLSEN L+G +PQWL+E
Sbjct: 318 NLTWDNSVDLVPRCNLTQLSLKACSLRGGIPEWISTQTALNLLDLSENMLQGPFPQWLAE 377

Query: 374 LNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNN 433
           ++L  ++LSDN  TGSLPP LFES +LS+L LSRNNFSG+LP+ IG + +++VLML+ NN
Sbjct: 378 MDLSAIVLSDNKFTGSLPPRLFESLSLSLLTLSRNNFSGQLPDNIGNANAIIVLMLAKNN 437

Query: 434 FSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTI 493
           FSG +P SIS IYRL++LDLS N FSG  PAF  D+L+ ++D SSN FSGEVP +F    
Sbjct: 438 FSGQIPGSISEIYRLILLDLSGNRFSGNIPAFKPDALLAYIDFSSNEFSGEVPVTFSEET 497

Query: 494 LMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG 553
           ++LSL  NKFSG LP+NL+NLS LQHLDL DN +TGE   FLSQ++SLQ+LNLRN +L+G
Sbjct: 498 IILSLGNNKFSGSLPRNLTNLSKLQHLDLRDNQITGELQTFLSQMTSLQILNLRNNSLKG 557

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI 613
           SI D ++NLTSL+ILDLSNNNL G+IP   GNL GM+DTP+   T  + F  P E  DL+
Sbjct: 558 SIPDTIANLTSLRILDLSNNNLTGEIPVKLGNLVGMVDTPNTFATFIDFFIIPFEFNDLV 617

Query: 614 VNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTF 673
           VNWKNS +GLSS SL IYSL+DLS NQ+SGEIP+SLG LKGLK LN+SYN L G IP +F
Sbjct: 618 VNWKNSIQGLSSHSLDIYSLLDLSKNQISGEIPTSLGLLKGLKILNISYNHLSGGIPESF 677

Query: 674 GNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQI-DPVIY 732
           G+LE +E LDLSHN LSG IP T +KLQ+L +L +SNN LSG+IP   QMD    DP  Y
Sbjct: 678 GDLESVEGLDLSHNRLSGSIPSTLSKLQELATLDVSNNNLSGQIPVGGQMDTMFNDPKYY 737

Query: 733 ANNSGLCGMQIQVVCPEDVQPPP 755
           ANNSGLCGMQI+V CPED    P
Sbjct: 738 ANNSGLCGMQIRVPCPEDQSTAP 760

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789084|emb|CAN75789.1| hypothetical protein VITISV_041017 [Vitis vinifera]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/761 (57%), Positives = 569/761 (74%), Gaps = 34/761 (4%)

Query: 1   MANLSLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETW 60
           MANL LLL ++ LS  IL   CL CPE QK ALL+FKS +L   A NSS ++   GLE+W
Sbjct: 1   MANLGLLLGSIFLSIFIL--PCLSCPEYQKQALLQFKSSIL---ASNSSFNSSTFGLESW 55

Query: 61  NSSSDCCRWEMVRCRS--RGPSQEVTGLDLNNLF---PLDSIVTSVVLAPIFRIRSLMTL 115
           NSSS CC+W+ V C S     S+ VTGL L+ L+   P    + S VLAP+F+IRSLM L
Sbjct: 56  NSSSSCCQWDQVTCSSPSNSTSRVVTGLYLSALYTMLPPRPQLPSTVLAPLFQIRSLMLL 115

Query: 116 DLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL 175
           D+S N++ GE+  +GFANL++L +LD+  NN N  IP   F+LR+L++LDL+ N++ G L
Sbjct: 116 DISSNNIYGEI-SSGFANLSKLVHLDMMLNNFNDFIPPHFFHLRHLQYLDLTNNSLHGSL 174

Query: 176 SSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLET 235
           S  V  L+NLK L LD+N + G++P EIGNLT L +LSL  N+FS GIP S+L L++L+T
Sbjct: 175 SPDVGSLQNLKVLKLDENFLSGKVPEEIGNLTKLQQLSLSSNQFSDGIPSSVLYLKELQT 234

Query: 236 LDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEI 295
           LDL  N LS EIP DIG L NI+ L L++N LTG IP SI+ ++KL TL L++N+L+GEI
Sbjct: 235 LDLSYNMLSMEIPIDIGNLPNISTLTLNDNQLTGGIPSSIQKLSKLETLHLENNLLTGEI 294

Query: 296 STWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTF 355
           S+WLFDL+G+K+LYLG N L WN++V IVPKC+L+ LSL+SC V G IP W+STQ  L F
Sbjct: 295 SSWLFDLKGLKNLYLGSNSLTWNNSVKIVPKCILSRLSLKSCGVAGEIPEWISTQKTLDF 354

Query: 356 LDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELP 415
           LDLSENEL+GT+PQWL+E+++G++ILSDN LTGSLPP LF+S +LSVL LSRNNFSGELP
Sbjct: 355 LDLSENELQGTFPQWLAEMDVGSIILSDNKLTGSLPPVLFQSLSLSVLALSRNNFSGELP 414

Query: 416 ETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE-FPAFGSDSLVGHV 474
           + IG +  +M+LML+ NNFSG +P+SIS IYRLL+LDLS+N FSG+ FP F  +  +  +
Sbjct: 415 KNIGDAGGLMILMLAENNFSGPIPQSISQIYRLLLLDLSSNRFSGKTFPIFDPEGFLAFI 474

Query: 475 DISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAF 534
           D SSN FSGE+P SF    ++L+L  NKFSG LP NLS+LS L+HLDLHDNNL G+ P  
Sbjct: 475 DFSSNEFSGEIPMSFSQETMILALGGNKFSGSLPSNLSSLSKLEHLDLHDNNLKGDLPES 534

Query: 535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPS 594
           L Q+S+LQVL+LRN +L+GSI + +SNL+S++ILD+SNNNL+G+IP   GNL GMI+TP+
Sbjct: 535 LFQISTLQVLSLRNNSLQGSIPETISNLSSVRILDVSNNNLIGEIPKGCGNLVGMIETPN 594

Query: 595 ILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKG 654
           +L ++ ++F+F +E +DLIVNWK SK+                     GEIP+S+G+LK 
Sbjct: 595 LLSSVSDVFTFSIEFKDLIVNWKKSKQ---------------------GEIPASIGALKA 633

Query: 655 LKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           LK LN+SYN+L G IP +FG+LE +E+LDLSHN LSG IPQT  KLQQL++L +SNN+L+
Sbjct: 634 LKLLNVSYNKLSGKIPVSFGDLENVESLDLSHNQLSGSIPQTLVKLQQLSNLDVSNNQLT 693

Query: 715 GRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCPEDVQPPP 755
           GRIP   QM    DP+ YANNSGLCGMQI+V CPED +PPP
Sbjct: 694 GRIPVGGQMSTMADPIYYANNSGLCGMQIRVPCPED-EPPP 733

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809603|ref|XP_002872685.1| hypothetical protein ARALYDRAFT_490081 [Arabidopsis lyrata subsp. lyrata] gi|297318522|gb|EFH48944.1| hypothetical protein ARALYDRAFT_490081 [Arabidopsis lyrata subsp. lyrata]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/748 (55%), Positives = 546/748 (72%), Gaps = 21/748 (2%)

Query: 23  LCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQE 82
             CP+DQ+ +LLEFK++++ ++ +NS+A   +GGL TW  +SDCC+W  VRC +  PS+E
Sbjct: 25  FSCPQDQRQSLLEFKNMLIHNIKENSTA---VGGLGTWRPNSDCCKWLRVRCNASSPSKE 81

Query: 83  VTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDL 142
           V  L+L+ L  L   V+S +L P+ RI SL++LD+SYNS+QGE+PG  F NLT L  LD+
Sbjct: 82  VIDLNLSYLI-LSGTVSSSILRPVLRINSLVSLDVSYNSIQGEIPGDAFVNLTSLISLDM 140

Query: 143 KDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAE 202
             N  NGSIP +LF+L+ L+ LDLS N I G LS  +  LKNL++LILD+NLI G+IP E
Sbjct: 141 SSNRFNGSIPHELFSLKNLQRLDLSRNVIGGTLSGDIKELKNLQELILDENLIGGEIPPE 200

Query: 203 IGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILAL 262
           IG+L  L  L+LRQN F+G IP S+ +L KL+T+DLQ NSLS +IP+DIG L N++ L+L
Sbjct: 201 IGSLVELRTLTLRQNMFNGSIPSSVSRLTKLKTIDLQNNSLSSDIPDDIGNLVNLSTLSL 260

Query: 263 SNNALTGAIPQSIRNMTKLVTLRLD-SNVLSGEIST-WLFDLQGMKSLYLGGNKLKWNDN 320
           S N L G IP SI+N+  L T++L+ +N LSGEI T WLF L+ +K L LGGNKL+WN+N
Sbjct: 261 SMNKLWGGIPTSIQNLKNLETIQLENNNGLSGEIPTAWLFGLEKLKVLRLGGNKLQWNNN 320

Query: 321 VSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVI 380
             + P+  LT+LSLRSC ++G+IP WL  QT L +LDLS N LEG++P+WL++L +  +I
Sbjct: 321 GYVFPQFKLTDLSLRSCGLKGNIPDWLKNQTTLVYLDLSINRLEGSFPKWLADLTIQFII 380

Query: 381 LSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPK 440
           LSDN L+GSLPP LF+S +LS LVLSRNNFSG++PE I  S  VMVLMLS NNFSG VPK
Sbjct: 381 LSDNRLSGSLPPNLFQSPSLSYLVLSRNNFSGQIPEKIVISL-VMVLMLSENNFSGSVPK 439

Query: 441 SISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSE 500
           SI+ I+ L +LDLS N  SGEFP F  +S +  +DISSN FSG+VP+ FG +I ML +S+
Sbjct: 440 SITKIFLLELLDLSKNRLSGEFPRFHPESNLVWLDISSNEFSGDVPAYFGGSISMLLMSQ 499

Query: 501 NKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNLRNTALEGSITDGL 559
           N FSG+ PQN  NLS L  LDLHDN ++GEF        SSL+VL+LRN +L+GSI +G+
Sbjct: 500 NNFSGEFPQNFRNLSRLIRLDLHDNKISGEFASLTSRLSSSLEVLSLRNNSLKGSIPEGI 559

Query: 560 SNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE-IFSFPVEIQDLI----- 613
           SNLTSLQ+LDLS NNL G +PSS GNL  MI +P    +     +SF  +++ LI     
Sbjct: 560 SNLTSLQVLDLSQNNLDGYLPSSLGNLTSMIKSPESSSSAKRPFYSFNTDLETLIKIKSQ 619

Query: 614 ------VNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG 667
                 VNWKNSK+ L  ++  +Y+L+DLS N+L GEIP+SLG+LK LK LN+S N+  G
Sbjct: 620 DIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKRLKVLNVSNNEFSG 679

Query: 668 NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQI 727
            IP +FG+LE +E+LDLSHN+L+G+IP+T +KL +L +L LSNNKL+GRIP SPQ+DR  
Sbjct: 680 LIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLSNNKLTGRIPVSPQLDRLN 739

Query: 728 DPVIYANNSGLCGMQIQVVC-PEDVQPP 754
           +P IYANNSG+CGMQIQV C P   + P
Sbjct: 740 NPNIYANNSGICGMQIQVPCSPTQTKQP 767

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42566300|ref|NP_192331.2| receptor like protein 46 [Arabidopsis thaliana] gi|332656975|gb|AEE82375.1| receptor like protein 46 [Arabidopsis thaliana]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/750 (54%), Positives = 535/750 (71%), Gaps = 25/750 (3%)

Query: 25  CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVT 84
           CP+DQ+ +LLEFK+L++ ++ DN +A   LG   TW  +SDCC+W  V C +  PS+EV 
Sbjct: 24  CPQDQRQSLLEFKNLLIHNIKDNYTAFEELG---TWRPNSDCCKWLRVTCNASSPSKEVI 80

Query: 85  GLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKD 144
            L+L  L P   +V+S +L PI RI SL+ LD+S+N++QGE+PG  F NLT L  LD+  
Sbjct: 81  DLNLFLLIP-PGLVSSSILRPILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDMCC 139

Query: 145 NNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG 204
           N  NGSIP +LF+L  L+ LDLS N I G LS  +  LKNL++LILD+NLI G IP+EIG
Sbjct: 140 NRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGDIKELKNLQELILDENLIGGAIPSEIG 199

Query: 205 NLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN 264
           +L  L  L+LRQN F+  IP S+ +L KL+T+DLQ N LS +IP+DIG L N++ L+LS 
Sbjct: 200 SLVELLTLTLRQNMFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSM 259

Query: 265 NALTGAIPQSIRNMTKLVTLRLD-SNVLSGEI-STWLFDLQGMKSLYL-GGNKLKWNDNV 321
           N L+G IP SI N+  L TL+L+ +N LSGEI + WLF LQ +K L L G NKL+WN+N 
Sbjct: 260 NKLSGGIPSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNG 319

Query: 322 SIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVIL 381
            + P+  LT LSLRSC + G+IP WL  QT L +LDLS N LEG +P+WL++L +  + L
Sbjct: 320 YVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWLADLKIRNITL 379

Query: 382 SDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKS 441
           SDN LTGSLPP LF+  +L  LVLSRNNFSG++P+TIG+S  VMVLMLS NNFSG VPKS
Sbjct: 380 SDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGES-QVMVLMLSENNFSGSVPKS 438

Query: 442 ISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSEN 501
           I+ I  L +LDLS N  SGEFP F  +S +  +DISSN FSG+VP+ FG +  ML +S+N
Sbjct: 439 ITKIPFLKLLDLSKNRLSGEFPRFRPESYLEWLDISSNEFSGDVPAYFGGSTSMLLMSQN 498

Query: 502 KFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQL-SSLQVLNLRNTALEGSITDGLS 560
            FSG+ PQN  NLS L  LDLHDN ++G   + +SQL SS++VL+LRN +L+GSI +G+S
Sbjct: 499 NFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGIS 558

Query: 561 NLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTP-----SILPTLPEIFSFP-----VEIQ 610
           NLTSL++LDLS NNL G +PSS GNL  MI +P     +I P        P     +EI+
Sbjct: 559 NLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIPNIERLIEIE 618

Query: 611 -----DLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQL 665
                 L+VNWKNSK+ L  ++  +Y+L+DLS N+L GEIP+SLG+LK LK LNLS N+ 
Sbjct: 619 SEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEF 678

Query: 666 QGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDR 725
            G IP +FG+LE +E+LDLSHN+L+G+IP+T +KL +L +L L NNKL GRIPESPQ+DR
Sbjct: 679 SGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDR 738

Query: 726 QIDPVIYANNSGLCGMQIQVVC-PEDVQPP 754
             +P IYANNSG+CGMQIQV C P   + P
Sbjct: 739 LNNPNIYANNSGICGMQIQVPCFPTQTKQP 768

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478805|ref|XP_002283728.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/749 (54%), Positives = 525/749 (70%), Gaps = 23/749 (3%)

Query: 25  CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGP---SQ 81
           CPE QK ALL+FKS +L   A  SS ++    L++WNS+S CCRW+ V C S  P   S+
Sbjct: 25  CPEHQKQALLQFKSSIL---AITSSFNSSNSLLQSWNSNSSCCRWDSVEC-SHTPNSTSR 80

Query: 82  EVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLD 141
            V GL L  LF     V+S +LAPIF IRSL  LD+  N++QGE+P  GFANL+ L  LD
Sbjct: 81  TVIGLKLIELF-TKPPVSSTILAPIFHIRSLEWLDIEENNIQGEIPAVGFANLSNLVSLD 139

Query: 142 LKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI-P 200
           L  NN +GS+P QLF+L  L+ L L  N++ GK+   +  L  L++L L DN IQG+I P
Sbjct: 140 LSTNNFSGSVPPQLFHLPLLQCLSLDGNSLSGKVPEEIGNLSRLRELYLSDNNIQGEILP 199

Query: 201 AEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITIL 260
            EIGNL+ L  LSL  N+FS  + LS+L L+ LE L    N LS EIP +IG L NI+ L
Sbjct: 200 EEIGNLSRLQWLSLSGNRFSDDMLLSVLSLKGLEFLYFSDNDLSTEIPTEIGNLPNISTL 259

Query: 261 ALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDN 320
           ALSNN LTG IP S++ ++KL  L L +N+L+GEI +WLF  +G++ LYLGGN+L WND+
Sbjct: 260 ALSNNRLTGGIPSSMQKLSKLEQLYLHNNLLTGEIPSWLFHFKGLRDLYLGGNRLTWNDS 319

Query: 321 VSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVI 380
           V I P   L+ LSL+SC + G IP W+STQT L FLDLS+N L+G +PQW+ E+ L  + 
Sbjct: 320 VKIAPNPRLSLLSLKSCGLVGEIPKWISTQTNLYFLDLSKNNLQGAFPQWVLEMRLEFLF 379

Query: 381 LSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPK 440
           LS N  TGSLPP LF   +L VL LSRNNFSGELP+ IG +TS+ +L LS NNFSG +P+
Sbjct: 380 LSSNEFTGSLPPGLFSGPSLHVLALSRNNFSGELPKNIGDATSLEILTLSENNFSGPIPQ 439

Query: 441 SISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSE 500
           S+  +  L  LDLS N F G FP F  +S + ++D SSN FSGEVP++F    + L+LS 
Sbjct: 440 SLIKVPYLKFLDLSRNRFFGPFPVFYPESQLSYIDFSSNDFSGEVPTTFPKQTIYLALSG 499

Query: 501 NKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLS 560
           NK SG LP NL+NLS L+ L L DNNLTGE P FLSQ+S+LQVLNLRN + +G I + + 
Sbjct: 500 NKLSGGLPLNLTNLSNLERLQLQDNNLTGELPNFLSQISTLQVLNLRNNSFQGLIPESIF 559

Query: 561 NLTSLQILDLSNNNLLGKIPSSFGNLQGMI---DTPSILPTLPEIF--------SFPV-- 607
           NL++L+ILD+S+NNL G+IP    NL GMI   ++PS + ++ ++           PV  
Sbjct: 560 NLSNLRILDVSSNNLTGEIPKESCNLVGMIRAQNSPSSILSIIDVSYIDKLSTEEMPVHL 619

Query: 608 EIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG 667
           EI+DLIVNWKNSK+G+SS +L +Y+L+DLSNNQLSG+IP+SLG LK LK LN+S N+L G
Sbjct: 620 EIEDLIVNWKNSKQGISSDNLNMYTLLDLSNNQLSGQIPASLGPLKALKLLNISCNKLSG 679

Query: 668 NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQI 727
            IP++FG+LE +ETLDLSHN LSG IPQT  KLQQLT L +SNN+L+GRIP+  QM   +
Sbjct: 680 KIPTSFGDLENIETLDLSHNKLSGSIPQTLTKLQQLTILDVSNNQLTGRIPDGGQMGTMV 739

Query: 728 -DPVIYANNSGLCGMQIQVVCPEDVQPPP 755
            DP  YANNSGLCGMQIQV CPED  P P
Sbjct: 740 LDPNYYANNSGLCGMQIQVSCPEDEPPRP 768

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532453|ref|XP_004173195.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Cucumis sativus]

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/741 (53%), Positives = 522/741 (70%), Gaps = 16/741 (2%)

Query: 25  CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRS-RGPSQEV 83
           CP+ QK ALL FK  +L       S+  +   L++WNS++DCC WE V C S    S+ V
Sbjct: 46  CPDQQKQALLLFKDTLLSTTISPDSSIPLFSSLDSWNSTTDCCHWERVVCSSPDSSSRMV 105

Query: 84  TGLDLNNL--------FPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLT 135
            GL L  L         PLD       L P+F I+SLM LDLS N  +GE+ G GF NL+
Sbjct: 106 QGLYLYFLALRITEDPLPLDG----KALMPLFTIKSLMLLDLSSNYFEGEISGPGFGNLS 161

Query: 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLI 195
           ++  L+L  N  +GSIP Q+++L+YL++LD+S+N + G L+S V  L+NL+ L LD N +
Sbjct: 162 KMVNLNLMQNKFSGSIPPQMYHLQYLQYLDMSSNLLGGTLTSDVRFLRNLRVLKLDSNSL 221

Query: 196 QGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLA 255
            G++P EIG+L  L KL +R N F G +PL+++ L+ LETLD++ N  +  IP DIG+L+
Sbjct: 222 TGKLPEEIGDLEMLQKLFIRSNSFVGEVPLTIVNLKSLETLDMRDNKFTMGIPSDIGSLS 281

Query: 256 NITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKL 315
           N+T LALSNN L G IP SI++M KL  L L++N+L G +  WLFD++G+  L +GGN +
Sbjct: 282 NLTHLALSNNKLNGTIPTSIQHMEKLEQLELENNLLEGLVPIWLFDMKGLVDLLIGGNLM 341

Query: 316 KWNDNV-SIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL 374
            WN++V S+ PK ML+ LSL+SC + G IP W+S+Q  L FLDLS+N+LEGT+P WL+E+
Sbjct: 342 TWNNSVKSVKPKQMLSRLSLKSCGLIGEIPGWISSQKGLNFLDLSKNKLEGTFPLWLAEM 401

Query: 375 NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
            LG++ILSDN L+GSLPP LFES +LSVL LSRNNFSGELPE IG + S+M+LMLS N+F
Sbjct: 402 ALGSIILSDNKLSGSLPPRLFESLSLSVLDLSRNNFSGELPENIGNANSIMLLMLSGNDF 461

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGE-FPAFGSDSLVGHVDISSNRFSGEVPSSFGVTI 493
           SG VPKSISNI+RLL+LD S N  SG+ FP F  D  +G++D+SSN F+GE+P+ F    
Sbjct: 462 SGEVPKSISNIHRLLLLDFSRNRLSGDTFPVFDPDGFLGYIDLSSNDFTGEIPTIFPQQT 521

Query: 494 LMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG 553
            +LSLS N+FSG LP+NL+N +LL+HLDL +NN++GE P FLS+L +LQ+L+LRN +L G
Sbjct: 522 RILSLSNNRFSGSLPKNLTNWTLLEHLDLQNNNISGELPDFLSELPTLQILSLRNNSLTG 581

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI 613
            I   +S +++L ILDL +N L+G+IP   G L+GMID PS         +  +   DLI
Sbjct: 582 PIPKSISKMSNLHILDLCSNELIGEIPPEIGELKGMIDRPSTYSLSDAFLNIDIGFNDLI 641

Query: 614 VNWKNSKRGL-SSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPST 672
           VNWK S  GL +S SL IYSL+DLS N LSGEIP+S+G+LK +K LNL+YN L GNIPS+
Sbjct: 642 VNWKKSLLGLPTSPSLDIYSLLDLSGNHLSGEIPTSIGNLKDIKLLNLAYNNLSGNIPSS 701

Query: 673 FGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIY 732
            G LE +ETLDLSHN LSG IP++   L +L+ L +SNNKL+GRIP   QM     P  Y
Sbjct: 702 LGKLEKVETLDLSHNELSGSIPESLVNLHELSVLDVSNNKLTGRIPVGGQMTIMNTPSYY 761

Query: 733 ANNSGLCGMQIQVVCPEDVQP 753
           ANNSGLCG+QI+  CPED QP
Sbjct: 762 ANNSGLCGIQIRQACPEDQQP 782

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452781|ref|XP_004144137.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Cucumis sativus]

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/741 (52%), Positives = 522/741 (70%), Gaps = 16/741 (2%)

Query: 25  CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRS-RGPSQEV 83
           CP+ QK ALL FK  +L       S+  +   L++WNS++DCC WE V C S    S+ V
Sbjct: 46  CPDQQKQALLLFKDTLLSTTISPDSSIPLFSSLDSWNSTTDCCHWERVVCSSPDSSSRMV 105

Query: 84  TGLDLNNL--------FPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLT 135
            GL L  L         PLD       L P+F I+SLM LDLS N  +GE+ G GF NL+
Sbjct: 106 QGLYLYFLALRITEDPLPLDG----KALMPLFTIKSLMLLDLSSNYFEGEISGPGFGNLS 161

Query: 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLI 195
           ++  L+L  N  +GSIP Q+++L+YL++LD+S+N + G L+S V  L+NL+ L LD N +
Sbjct: 162 KMVNLNLMQNKFSGSIPPQMYHLQYLQYLDMSSNLLGGTLTSDVRFLRNLRVLKLDSNSL 221

Query: 196 QGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLA 255
            G++P EIG+L  L KL +R N F G +PL+++ L+ L+TLD++ N  +  IP DIG+L+
Sbjct: 222 TGKLPEEIGDLEMLQKLFIRSNSFVGEVPLTIVNLKSLQTLDMRDNKFTMGIPSDIGSLS 281

Query: 256 NITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKL 315
           N+T LALSNN L G IP SI++M KL  L L++N+L G +  WLFD++G+  L +GGN +
Sbjct: 282 NLTHLALSNNKLNGTIPTSIQHMEKLEQLELENNLLEGLVPIWLFDMKGLVDLLIGGNLM 341

Query: 316 KWNDNV-SIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL 374
            WN++V S+ PK ML+ LSL+SC + G IP W+S+Q  L FLDLS+N+LEGT+P WL+E+
Sbjct: 342 TWNNSVKSVKPKQMLSRLSLKSCGLIGEIPGWISSQKGLNFLDLSKNKLEGTFPLWLAEM 401

Query: 375 NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
            LG++ILSDN L+GSLPP LFES +LSVL LSRNNFSGELPE IG + S+M+LMLS N+F
Sbjct: 402 ALGSIILSDNKLSGSLPPRLFESLSLSVLDLSRNNFSGELPENIGNANSIMLLMLSGNDF 461

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGE-FPAFGSDSLVGHVDISSNRFSGEVPSSFGVTI 493
           SG VPKSISNI+RLL+LD S N  SG+ FP F  D  +G++D+SSN F+GE+P+ F    
Sbjct: 462 SGEVPKSISNIHRLLLLDFSRNRLSGDTFPVFDPDGFLGYIDLSSNDFTGEIPTIFPQQT 521

Query: 494 LMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG 553
            +LSLS N+FSG LP+NL+N +LL+HLDL +NN++GE P FLS+L +LQ+L+LRN +L G
Sbjct: 522 RILSLSNNRFSGSLPKNLTNWTLLEHLDLQNNNISGELPDFLSELPTLQILSLRNNSLTG 581

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI 613
            I   +S +++L ILDL +N L+G+IP   G L+GMID PS         +  +   DLI
Sbjct: 582 PIPKSISKMSNLHILDLCSNELIGEIPPEIGELKGMIDRPSTYSLSDAFLNIDIGFNDLI 641

Query: 614 VNWKNSKRGL-SSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPST 672
           VNWK S  GL +S SL IYSL+DLS N LSGEIP+S+G+LK +K LNL+YN L GNIPS+
Sbjct: 642 VNWKKSLLGLPTSPSLDIYSLLDLSENHLSGEIPTSIGNLKDIKLLNLAYNNLSGNIPSS 701

Query: 673 FGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIY 732
            G LE +ETLDLSHN LSG IP++   L +L+ L +SNNKL+GRIP   QM     P  Y
Sbjct: 702 LGKLEKVETLDLSHNELSGSIPESLVNLHELSVLDVSNNKLTGRIPVGGQMTIMNTPSYY 761

Query: 733 ANNSGLCGMQIQVVCPEDVQP 753
           ANNSGLCG+QI+  CPED QP
Sbjct: 762 ANNSGLCGIQIRQPCPEDQQP 782

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3377849|gb|AAC28231.1| similar to receptor protein kinases [Arabidopsis thaliana] gi|7267178|emb|CAB77890.1| putative disease resistance protein [Arabidopsis thaliana]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/750 (49%), Positives = 490/750 (65%), Gaps = 70/750 (9%)

Query: 25  CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVT 84
           CP+DQ+ +LLEFK+L++ ++ DN +A   LG   TW  +SDCC+W  V C +  PS+EV 
Sbjct: 24  CPQDQRQSLLEFKNLLIHNIKDNYTAFEELG---TWRPNSDCCKWLRVTCNASSPSKEVI 80

Query: 85  GLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKD 144
            L+L  L P   +V+S +L PI RI SL+ LD+S+N++QGE+PG  F             
Sbjct: 81  DLNLFLLIP-PGLVSSSILRPILRINSLVGLDVSFNNIQGEIPGYAFV------------ 127

Query: 145 NNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG 204
                       NL  L  LD+  N   G +   +  L NL++L L  N+I G +  +I 
Sbjct: 128 ------------NLTSLISLDMCCNRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGDIK 175

Query: 205 NLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN 264
            L NL +L L +N   G IP                     EI +DIG L N++ L+LS 
Sbjct: 176 ELKNLQELILDENLIGGAIP--------------------SEI-DDIGNLVNLSTLSLSM 214

Query: 265 NALTGAIPQSIRNMTKLVTLRLDSN-VLSGEI-STWLFDLQGMKSLYL-GGNKLKWNDNV 321
           N L+G IP SI N+  L TL+L++N  LSGEI + WLF LQ +K L L G NKL+WN+N 
Sbjct: 215 NKLSGGIPSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNG 274

Query: 322 SIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVIL 381
            + P+  LT LSLRSC + G+IP WL  QT L +LDLS N LEG +P+WL++L +  + L
Sbjct: 275 YVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWLADLKIRNITL 334

Query: 382 SDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKS 441
           SDN LTGSLPP LF+  +L  LVLSRNNFSG++P+TIG+S  VMVLMLS NNFSG VPKS
Sbjct: 335 SDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGES-QVMVLMLSENNFSGSVPKS 393

Query: 442 ISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSEN 501
           I+ I  L +LDLS N  SGEFP F  +S +  +DISSN FSG+VP+ FG +  ML +S+N
Sbjct: 394 ITKIPFLKLLDLSKNRLSGEFPRFRPESYLEWLDISSNEFSGDVPAYFGGSTSMLLMSQN 453

Query: 502 KFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSS-LQVLNLRNTALEGSITDGLS 560
            FSG+ PQN  NLS L  LDLHDN ++G   + +SQLSS ++VL+LRN +L+GSI +G+S
Sbjct: 454 NFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGIS 513

Query: 561 NLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTP-----SILPTLPEIFSFP-----VEIQ 610
           NLTSL++LDLS NNL G +PSS GNL  MI +P     +I P        P     +EI+
Sbjct: 514 NLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIPNIERLIEIE 573

Query: 611 D-----LIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQL 665
                 L+VNWKNSK+ L  ++  +Y+L+DLS N+L GEIP+SLG+LK LK LNLS N+ 
Sbjct: 574 SEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEF 633

Query: 666 QGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDR 725
            G IP +FG+LE +E+LDLSHN+L+G+IP+T +KL +L +L L NNKL GRIPESPQ+DR
Sbjct: 634 SGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDR 693

Query: 726 QIDPVIYANNSGLCGMQIQVVC-PEDVQPP 754
             +P IYANNSG+CGMQIQV C P   + P
Sbjct: 694 LNNPNIYANNSGICGMQIQVPCFPTQTKQP 723

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	757
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.920	0.859	0.478	4.1e-159
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.869	0.587	0.332	1.4e-80
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.837	0.540	0.321	2.6e-77
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.896	0.597	0.312	1.4e-76
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.902	0.607	0.296	3.4e-76
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.833	0.697	0.331	1.4e-73
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.854	0.587	0.324	5e-73
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.852	0.516	0.326	6e-73
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.778	0.563	0.324	6.1e-73
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.871	0.527	0.315	2.1e-72

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 1550 (550.7 bits), Expect = 4.1e-159, P = 4.1e-159
 Identities = 342/715 (47%), Positives = 464/715 (64%)

Query:    25 CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVT 84
             CP+DQ+ +LLEFK+L++ ++ DN +A   LG   TW  +SDCC+W  V C +  PS+EV 
Sbjct:    24 CPQDQRQSLLEFKNLLIHNIKDNYTAFEELG---TWRPNSDCCKWLRVTCNASSPSKEVI 80

Query:    85 GLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKD 144
              L+L  L P   +V+S +L PI RI SL+ LD+S+N++QGE+PG  F NLT L  LD+  
Sbjct:    81 DLNLFLLIP-PGLVSSSILRPILRINSLVGLDVSFNNIQGEIPGYAFVNLTSLISLDMCC 139

Query:   145 NNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG 204
             N  NGSIP +LF+L  L+ LDLS N I G LS  +  LKNL++LILD+NLI G IP+EIG
Sbjct:   140 NRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGDIKELKNLQELILDENLIGGAIPSEIG 199

Query:   205 NLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN 264
             +L  L  L+LRQN F+  IP S+ +L KL+T+DLQ N LS +IP+DIG L N++ L+LS 
Sbjct:   200 SLVELLTLTLRQNMFNSSIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSM 259

Query:   265 NALTGAIPQSIRNMTKLVTLRLDSNV-LSGEI-STWLFDLQGMKSLYL-GGNKLKWNDNV 321
             N L+G IP SI N+  L TL+L++N  LSGEI + WLF LQ +K L L G NKL+WN+N 
Sbjct:   260 NKLSGGIPSSIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNG 319

Query:   322 SIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVIL 381
              + P+  LT LSLRSC + G+IP WL  QT L +LDLS N LEG +P+WL++L +  + L
Sbjct:   320 YVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWLADLKIRNITL 379

Query:   382 SDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKS 441
             SDN LTGSLPP LF+  +L  LVLSRNNFSG++P+TIG+S  VMVLMLS NNFSG VPKS
Sbjct:   380 SDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGES-QVMVLMLSENNFSGSVPKS 438

Query:   442 ISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSEN 501
             I+ I  L +LDLS N  SGEFP F  +S +  +DISSN FSG+VP+ FG +  ML +S+N
Sbjct:   439 ITKIPFLKLLDLSKNRLSGEFPRFRPESYLEWLDISSNEFSGDVPAYFGGSTSMLLMSQN 498

Query:   502 KFSGQLPXXXXXXXXXXXXXXXXXXXTGEFPAFXXXXXXXX-VLNLRNTALEGSITDGLS 560
              FSG+ P                   +G   +          VL+LRN +L+GSI +G+S
Sbjct:   499 NFSGEFPQNFRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGIS 558

Query:   561 NLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSK 620
             NLTSL++LDLS NNL G +PSS GNL  MI +P   P+   I  +     D+     N +
Sbjct:   559 NLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPE--PSAMTIRPYFSSYTDI----PNIE 612

Query:   621 RGLSSKSLAIYSLMDLSNNQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILE 680
             R +  +S  I+SL+   N + S ++                 N+L G IP++ GNL+ L+
Sbjct:   613 RLIEIESEDIFSLV--VNWKNSKQV-LFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLK 669

Query:   681 TLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANN 735
              L+LS+N  SG IPQ+F  L+++ SL LS+N L+G IP++     +++ +   NN
Sbjct:   670 VLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNN 724

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
 Identities = 225/676 (33%), Positives = 332/676 (49%)

Query:    78 GPSQEVTGLDLNNLFPLD-SI-VTSVVLAPIF-RIRSLMTLDLSYNSMQGEV-PGTGFAN 133
             G  Q+   + L+NL  +D S+ + S  + P F  +  L+  DLS N + GE+ P  G  N
Sbjct:    91 GTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLG--N 148

Query:   134 LTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN 193
             L  LT L L  N L   IPS+L N+  +  L LS N + G + S +  LKNL  L L +N
Sbjct:   149 LKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYEN 208

Query:   194 LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT 253
              + G IP E+GN+ ++  L+L QNK +G IP +L  L+ L  L L  N L+G IP +IG 
Sbjct:   209 YLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGN 268

Query:   254 LANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN 313
             + ++T LALS N LTG+IP S+ N+  L  L L  N L+G I   L +++ M  L L  N
Sbjct:   269 MESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNN 328

Query:   314 KLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSE 373
             KL  +   S+     LT L L    + G IP  L     +  L L+ N+L G+ P     
Sbjct:   329 KLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGN 388

Query:   374 L-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSN 432
             L NL  + L  N LTG +P  L    ++  L LS+N  +G +P++ G  T +  L L  N
Sbjct:   389 LKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVN 448

Query:   433 NFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFG- 490
             + SG +P  ++N   L  L L  N+F+G FP        + ++ +  N   G +P S   
Sbjct:   449 HLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRD 508

Query:   491 -VTILMLSLSENKFSGQLPXXXXXXXXXXXXXXXXXXXTGEFPAFXXXXXXXXVLNLRNT 549
               +++      NKF+G +                     GE  +          L + N 
Sbjct:   509 CKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNN 568

Query:   550 ALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGM----IDTPSILPTLPEIFSF 605
              + G+I   + N+T L  LDLS NNL G++P + GNL  +    ++   +   +P   SF
Sbjct:   569 NITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSF 628

Query:   606 PVEIQDLIVNWKNSKRGLSSKSLAIYSL--MDLSNNQLSGEIPXXXXXXXXXXXXXXXYN 663
                ++ L ++  N    +     +   L  M+LS N+  G IP               +N
Sbjct:   629 LTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRLSKLTQLTQLDLS-HN 687

Query:   664 QLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQM 723
             QL G IPS   +L+ L+ LDLSHN+LSG IP TF  +  LT++ +SNNKL G +P++P  
Sbjct:   688 QLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTF 747

Query:   724 DRQIDPVIYANNSGLC 739
              R+        N GLC
Sbjct:   748 -RKATADALEENIGLC 762

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 2.6e-77, P = 2.6e-77
 Identities = 213/663 (32%), Positives = 325/663 (49%)

Query:    87 DLNNLFPLD---SIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLK 143
             +L N+F LD   ++++  V   I +  SL+ +   YN++ G++P     +L  L      
Sbjct:   142 ELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPEC-LGDLVHLQMFVAA 200

Query:   144 DNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI 203
              N+L GSIP  +  L  L  LDLS N + GK+      L NL+ L+L +NL++G IPAEI
Sbjct:   201 GNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEI 260

Query:   204 GNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALS 263
             GN ++L +L L  N+ +G IP  L  L +L+ L + +N L+  IP  +  L  +T L LS
Sbjct:   261 GNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLS 320

Query:   264 NNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSI 323
              N L G I + I  +  L  L L SN  +GE    + +L+ +  L +G N +       +
Sbjct:   321 ENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADL 380

Query:   324 VPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSD 383
                  L  LS     + G IP  +S  T L  LDLS N++ G  P+    +NL  + +  
Sbjct:   381 GLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGR 440

Query:   384 NMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSIS 443
             N  TG +P  +F   NL  L ++ NN +G L   IG+   + +L +S N+ +G +P+ I 
Sbjct:   441 NHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIG 500

Query:   444 NIYRLLVLDLSNNSFSGEFPAFGSD-SLVGHVDISSNRFSGEVPSS-FGVTIL-MLSLSE 500
             N+  L +L L +N F+G  P   S+ +L+  + + SN   G +P   F + +L +L LS 
Sbjct:   501 NLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSN 560

Query:   501 NKFSGQLPXXXXXXXXXXXXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTALEGSIT-DGL 559
             NKFSGQ+P                    G  PA           ++ +  L G+I  + L
Sbjct:   561 NKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELL 620

Query:   560 SNLTSLQI-LDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKN 618
             ++L ++Q+ L+ SNN L G IP   G L+ M+    +   L    S P  +Q      KN
Sbjct:   621 ASLKNMQLYLNFSNNLLTGTIPKELGKLE-MVQEIDLSNNLFS-GSIPRSLQAC----KN 674

Query:   619 SKRGLSSKSLAIYSLMDLSNNQLSGEIPXXXXXXXXXXXXXX-XYNQLQGNIPSTFGNLE 677
                        +++L D S N LSG IP                 N   G IP +FGN+ 
Sbjct:   675 -----------VFTL-DFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMT 722

Query:   678 ILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSG 737
              L +LDLS N+L+G+IP++ A L  L  L L++N L G +PES    + I+      N+ 
Sbjct:   723 HLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVF-KNINASDLMGNTD 781

Query:   738 LCG 740
             LCG
Sbjct:   782 LCG 784

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 1.4e-76, P = 1.4e-76
 Identities = 222/711 (31%), Positives = 342/711 (48%)

Query:    54 LGGLETWNSSSDC--CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRS 111
             LG L +W+ S+    C W  V C +      VT + L  L  L   ++  +      +R 
Sbjct:    43 LGALTSWDPSTPAAPCDWRGVGCTNH----RVTEIRLPRL-QLSGRISDRISG----LRM 93

Query:   112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAI 171
             L  L L  NS  G +P T  A  TRL  + L+ N+L+G +P  + NL  LE  +++ N +
Sbjct:    94 LRKLSLRSNSFNGTIP-TSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRL 152

Query:   172 EGKLSSRVAGL-KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
              G++     GL  +L+ L +  N   GQIP+ + NLT L  L+L  N+ +G IP SL  L
Sbjct:   153 SGEIP---VGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNL 209

Query:   231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290
             + L+ L L  N L G +P  I   +++  L+ S N + G IP +   + KL  L L +N 
Sbjct:   210 QSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNN 269

Query:   291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM--LTELSLRSCSVRGSIPLWLS 348
              SG +   LF    +  + LG N             C   L  L L+   + G  PLWL+
Sbjct:   270 FSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLT 329

Query:   349 TQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSR 407
                 L  LD+S N   G  P  +  L  L  + L++N LTG +P  + +  +L VL    
Sbjct:   330 NILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEG 389

Query:   408 NNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA-FG 466
             N+  G++PE +G   ++ VL L  N+FSG+VP S+ N+ +L  L+L  N+ +G FP    
Sbjct:   390 NSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELM 449

Query:   467 SDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPXXXXXXXXXXXXXXXX 524
             + + +  +D+S NRFSG VP S      +  L+LS N FSG++P                
Sbjct:   450 ALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSK 509

Query:   525 XXXTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG 584
                +GE P          V+ L+     G + +G S+L SL+ ++LS+N+  G+IP +FG
Sbjct:   510 QNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFG 569

Query:   585 NLQGMIDTP----SILPTLP-EIFSFP-VEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSN 638
              L+ ++        I  ++P EI +   +E+ +L  N            L    ++DL  
Sbjct:   570 FLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQ 629

Query:   639 NQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFA 698
             N LSGEIP               +N L G IP +F  L  L  +DLS N+L+G+IP + A
Sbjct:   630 NNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLA 689

Query:   699 KLQQ-LTSLYLSNNKLSGRIPESPQMDRQIDPVI-YANNSGLCGMQIQVVC 747
              +   L    +S+N L G IP S  +  +I+    ++ N+ LCG  +   C
Sbjct:   690 LISSNLVYFNVSSNNLKGEIPAS--LGSRINNTSEFSGNTELCGKPLNRRC 738

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 3.4e-76, P = 3.4e-76
 Identities = 212/714 (29%), Positives = 334/714 (46%)

Query:    43 DLADNSSADAMLGGLETWNSSSDC-CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSV 101
             +L +    D+ L  L  WN   +  C W  V C S+G S     L + +L  L S+  S 
Sbjct:    42 ELKNRGFQDS-LNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSL-DLSSMNLSG 99

Query:   102 VLAP-IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRY 160
             +++P I  + +L+ L+L+YN++ G++P     N ++L  + L +N   GSIP ++  L  
Sbjct:   100 IVSPSIGGLVNLVYLNLAYNALTGDIPRE-IGNCSKLEVMFLNNNQFGGSIPVEINKLSQ 158

Query:   161 LEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS 220
             L   ++  N + G L   +  L NL++L+   N + G +P  +GNL  L      QN FS
Sbjct:   159 LRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFS 218

Query:   221 GGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTK 280
             G IP  + +   L+ L L +N +SGE+P++IG L  +  + L  N  +G IP+ I N+T 
Sbjct:   219 GNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTS 278

Query:   281 LVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVR 340
             L TL L  N L G I + + +++ +K LYL  N+L       +     + E+      + 
Sbjct:   279 LETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLS 338

Query:   341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRN 399
             G IP+ LS  +EL  L L +N+L G  P  LS+L NL  + LS N LTG +PP      +
Sbjct:   339 GEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTS 398

Query:   400 LSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFS 459
             +  L L  N+ SG +P+ +G  + + V+  S N  SG +P  I     L++L+L +N   
Sbjct:   399 MRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIF 458

Query:   460 GEFP--AFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPXXXXXXX 515
             G  P       SL+  + +  NR +G+ P+     V +  + L +N+FSG LP       
Sbjct:   459 GNIPPGVLRCKSLL-QLRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQ 517

Query:   516 XXXXXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575
                         +   P            N+ + +L G I   ++N   LQ LDLS N+ 
Sbjct:   518 KLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSF 577

Query:   576 LGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMD 635
             +G +P   G+L  +                  EI  L  N  +     +  +L   + + 
Sbjct:   578 IGSLPPELGSLHQL------------------EILRLSENRFSGNIPFTIGNLTHLTELQ 619

Query:   636 LSNNQLSGEIP-XXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
             +  N  SG IP                YN   G IP   GNL +L  L L++N LSG+IP
Sbjct:   620 MGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIP 679

Query:   695 QTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCP 748
              TF  L  L     S N L+G++P + Q+ + +    +  N GLCG  ++   P
Sbjct:   680 TTFENLSSLLGCNFSYNNLTGQLPHT-QIFQNMTLTSFLGNKGLCGGHLRSCDP 732

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 223/673 (33%), Positives = 332/673 (49%)

Query:   109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA 168
             ++ L  LDLS NS+   +P   F  LT L  L L+ + L GSIP+   NL+ LE LDLS 
Sbjct:   246 LKLLEVLDLSENSLNSPIPNWLFG-LTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSN 304

Query:   169 N-AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG----NLTN-LHKLSLRQNKFSGG 222
             N A++G++ S +  L  LK L L  N + GQI   +     N  N L  L L  NK +G 
Sbjct:   305 NLALQGEIPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGT 364

Query:   223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
             +P SL  LR L+TLDL  NS +G +P  IG +A++  L LSNNA+ G I +S+  + +LV
Sbjct:   365 LPESLGSLRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELV 424

Query:   283 TLRLDSNVLSGEISTWLF-DLQGMKSLYLGGN---KLKWNDNVSIVPKCMLTELSLRSCS 338
              L L +N   G +    F +L+ +KS+ L       L +    + +P   L  + + +C 
Sbjct:   425 DLNLMANTWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCR 484

Query:   339 VRGSIPLWLSTQTELTFLDLSENELEGTYPQ-WLSELN--LGTVILSDNMLTGSLPPPLF 395
             + G  P+WL  QT+L F+ L    +E T P  W S ++  +  +IL++N + G LP  L 
Sbjct:   485 I-GLFPMWLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLA 543

Query:   396 ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIY-RLLVLDLS 454
               + L+ + LS NNF G  P     ST+   L L  NNFSG +P++I  +  R+  + L 
Sbjct:   544 FPK-LNTIDLSSNNFEGTFPLW---STNATELRLYENNFSGSLPQNIDVLMPRMEKIYLF 599

Query:   455 NNSFSGEFPAFGSD-SLVGHVDISSNRFSGEVPSSFGVTILM--LSLSENKFSGQLPXXX 511
             +NSF+G  P+   + S +  + +  N FSG  P  +    ++  + +SEN  SG++P   
Sbjct:   600 SNSFTGNIPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPESL 659

Query:   512 XXXXXXXXXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLS 571
                              G+ P           ++L    L G +   +  L+SL +L L 
Sbjct:   660 GMLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQ 719

Query:   572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVE--IQDL--IVNWKNSK--RGL-- 623
             +N+  G+IP    N+  +     IL       S P+   I +L  I    N++  + L  
Sbjct:   720 SNSFTGQIPDDLCNVPNL----RILDLSGNKISGPIPKCISNLTAIARGTNNEVFQNLVF 775

Query:   624 ----SSKSLAIYSLMDLSNNQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEIL 679
                 + +  AI + ++LS N +SGEIP                N + G+IP     L  L
Sbjct:   776 IVTRAREYEAIANSINLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIPEKISELSRL 835

Query:   680 ETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLC 739
             ETLDLS N  SG IPQ+FA +  L  L LS NKL G IP+  +     DP IY  N  LC
Sbjct:   836 ETLDLSKNKFSGAIPQSFAAISSLQRLNLSFNKLEGSIPKLLKFQ---DPSIYIGNELLC 892

Query:   740 GMQIQVVCPEDVQ 752
             G  +   CP+D++
Sbjct:   893 GKPLPKKCPKDIK 905

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 742 (266.3 bits), Expect = 5.0e-73, P = 5.0e-73
 Identities = 219/674 (32%), Positives = 313/674 (46%)

Query:    57 LETWNSSSDC-CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAP-IFRIRSLMT 114
             L  WNS+    C W  V C +     EV  L LN    L S+V S  L+P I  +  L  
Sbjct:    48 LRNWNSNDSVPCGWTGVMCSNYSSDPEV--LSLN----LSSMVLSGKLSPSIGGLVHLKQ 101

Query:   115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK 174
             LDLSYN + G++P     N + L  L L +N  +G IP ++  L  LE L +  N I G 
Sbjct:   102 LDLSYNGLSGKIPKE-IGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGS 160

Query:   175 LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLE 234
             L   +  L +L QL+   N I GQ+P  IGNL  L      QN  SG +P  +     L 
Sbjct:   161 LPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCESLV 220

Query:   235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
              L L +N LSGE+P++IG L  ++ + L  N  +G IP+ I N T L TL L  N L G 
Sbjct:   221 MLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQLVGP 280

Query:   295 ISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELT 354
             I   L DLQ ++ LYL  N L       I       E+     ++ G IPL L     L 
Sbjct:   281 IPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIEGLE 340

Query:   355 FLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGE 413
              L L EN+L GT P  LS L NL  + LS N LTG +P      R L +L L +N+ SG 
Sbjct:   341 LLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSLSGT 400

Query:   414 LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA-FGSDSLVG 472
             +P  +G  + + VL +S N+ SG +P  +     +++L+L  N+ SG  P    +   + 
Sbjct:   401 IPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCKTLV 460

Query:   473 HVDISSNRFSGEVPSSF--GVTILMLSLSENKFSGQLPXXXXXXXXXXXXXXXXXXXTGE 530
              + ++ N   G  PS+    V +  + L +N+F G +P                   TGE
Sbjct:   461 QLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGE 520

Query:   531 FPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGM- 589
              P           LN+ +  L G +   + N   LQ LD+  NN  G +PS  G+L  + 
Sbjct:   521 LPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLE 580

Query:   590 ---IDTPSILPTLPEIFSFPVEIQDLIV--NWKNSK--RGLSSKSLAIYSLMDLSNNQLS 642
                +   ++  T+P        + +L +  N  N    R L S +  +   ++LS N+L+
Sbjct:   581 LLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLT-GLQIALNLSYNKLT 639

Query:   643 GEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQ 702
             GEIP                N L G IPS+F NL  L   + S+NSL+G IP     L+ 
Sbjct:   640 GEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPL----LRN 695

Query:   703 LT-SLYLSNNKLSG 715
             ++ S ++ N  L G
Sbjct:   696 ISMSSFIGNEGLCG 709

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 6.0e-73, P = 6.0e-73
 Identities = 218/667 (32%), Positives = 314/667 (47%)

Query:    88 LNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNL 147
             L +LF   + +T  + + +  + ++ +L +  N + G++P T   NL  L  L L    L
Sbjct:   121 LESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPET-LGNLVNLQMLALASCRL 179

Query:   148 NGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLT 207
              G IPSQL  L  ++ L L  N +EG + + +    +L      +N++ G IPAE+G L 
Sbjct:   180 TGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLE 239

Query:   208 NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL 267
             NL  L+L  N  +G IP  L ++ +L+ L L  N L G IP+ +  L N+  L LS N L
Sbjct:   240 NLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNL 299

Query:   268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQ-GMKSLYLGGNKLKWNDNVSIVPK 326
             TG IP+   NM++L+ L L +N LSG +   +      ++ L L G +L     V +  K
Sbjct:   300 TGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVEL-SK 358

Query:   327 CM-LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDN 384
             C  L +L L + S+ GSIP  L    ELT L L  N LEGT    +S L NL  ++L  N
Sbjct:   359 CQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHN 418

Query:   385 MLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISN 444
              L G LP  +   R L VL L  N FSGE+P+ IG  TS+ ++ +  N+F G +P SI  
Sbjct:   419 NLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGR 478

Query:   445 IYRLLVLDLSNNSFSGEFPA-FGSDSLVGHVDISSNRFSGEVPSSFGVT--ILMLSLSEN 501
             +  L +L L  N   G  PA  G+   +  +D++ N+ SG +PSSFG    +  L L  N
Sbjct:   479 LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNN 538

Query:   502 KFSGQLPXXXXXXXXXXXXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSN 561
                G LP                    G               ++ N   E  I   L N
Sbjct:   539 SLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLS-FDVTNNGFEDEIPLELGN 597

Query:   562 LTSLQILDLSNNNLLGKIPSSFGNLQ--GMIDTPS--ILPTLPEIFSFPVEIQDLIVNWK 617
               +L  L L  N L GKIP + G ++   ++D  S  +  T+P       ++  + +N  
Sbjct:   598 SQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLN-N 656

Query:   618 NSKRGLSSKSLAIYSLMD---LSNNQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFG 674
             N   G     L   S +    LS+NQ    +P                N L G+IP   G
Sbjct:   657 NFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIG 716

Query:   675 NLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP-ESPQM-DRQ--IDPV 730
             NL  L  L+L  N  SG +PQ   KL +L  L LS N L+G IP E  Q+ D Q  +D +
Sbjct:   717 NLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALD-L 775

Query:   731 IYANNSG 737
              Y N +G
Sbjct:   776 SYNNFTG 782

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 6.1e-73, P = 6.1e-73
 Identities = 198/611 (32%), Positives = 294/611 (48%)

Query:   111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
             S++ L+L+   ++G      F++L  LT++DL  N  +G+I         LE+ DLS N 
Sbjct:    94 SIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQ 153

Query:   171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
             + G++   +  L NL  L L +N + G IP+EIG LT + ++++  N  +G IP S   L
Sbjct:   154 LVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNL 213

Query:   231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290
              KL  L L  NSLSG IP +IG L N+  L L  N LTG IP S  N+  +  L +  N 
Sbjct:   214 TKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQ 273

Query:   291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350
             LSGEI   + ++  + +L L  NKL      ++     L  L L    + GSIP  L   
Sbjct:   274 LSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEM 333

Query:   351 TELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNN 409
               +  L++SEN+L G  P    +L  L  + L DN L+G +PP +  S  L+VL L  NN
Sbjct:   334 ESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNN 393

Query:   410 FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSD 468
             F+G LP+TI +   +  L L  N+F G VPKS+ +   L+ +    NSFSG+   AFG  
Sbjct:   394 FTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVY 453

Query:   469 SLVGHVDISSNRFSGEVPSSFGVT--ILMLSLSENKFSGQLPXXXXXXXXXXXXXXXXXX 526
               +  +D+S+N F G++ +++  +  ++   LS N  +G +P                  
Sbjct:   454 PTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNR 513

Query:   527 XTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNL 586
              TGE P           L L    L G I  G+  LT+L+ LDLS+N    +IP +  NL
Sbjct:   514 ITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNL 573

Query:   587 QGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIP 646
                          P ++   +   DL    +    GL+   L+   ++DLS NQL GEI 
Sbjct:   574 -------------PRLYYMNLSRNDLD---QTIPEGLTK--LSQLQMLDLSYNQLDGEIS 615

Query:   647 XXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSL 706
                            +N L G IP +F ++  L  +D+SHN+L G IP   A        
Sbjct:   616 SQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDA 675

Query:   707 YLSNNKLSGRI 717
             +  N  L G +
Sbjct:   676 FEGNKDLCGSV 686

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.1e-72, P = 2.1e-72
 Identities = 219/694 (31%), Positives = 321/694 (46%)

Query:    57 LETWNSSSDC-CRWEMVRCRSRGP-SQEVTGLDL-----------NNLFPLDSIVTSVVL 103
             L  WNS S   C W  V C  R      ++GL L           NNL  +D + ++ ++
Sbjct:    50 LRDWNSGSPSYCNWTGVTCGGREIIGLNLSGLGLTGSISPSIGRFNNLIHID-LSSNRLV 108

Query:   104 APIFRI-----RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNL 158
              PI         SL +L L  N + G++P     +L  L  L L DN LNG+IP    NL
Sbjct:   109 GPIPTTLSNLSSSLESLHLFSNLLSGDIPSQ-LGSLVNLKSLKLGDNELNGTIPETFGNL 167

Query:   159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNK 218
               L+ L L++  + G + SR   L  L+ LIL DN ++G IPAEIGN T+L   +   N+
Sbjct:   168 VNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNR 227

Query:   219 FSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNM 278
              +G +P  L +L+ L+TL+L  NS SGEIP  +G L +I  L L  N L G IP+ +  +
Sbjct:   228 LNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTEL 287

Query:   279 TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK-CMLTELSLRSC 337
               L TL L SN L+G I    + +  ++ L L  N+L  +   +I      L +L L   
Sbjct:   288 ANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSET 347

Query:   338 SVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFE 396
              + G IP  +S    L  LDLS N L G  P  L +L  L  + L++N L G+L   +  
Sbjct:   348 QLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISN 407

Query:   397 SRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNN 456
               NL    L  NN  G++P+ IG    + ++ L  N FSG +P  I N  RL  +D   N
Sbjct:   408 LTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGN 467

Query:   457 SFSGEFPA-FGSDSLVGHVDISSNRFSGEVPSSFGVT--ILMLSLSENKFSGQLPXXXXX 513
               SGE P+  G    +  + +  N   G +P+S G    + ++ L++N+ SG +P     
Sbjct:   468 RLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGF 527

Query:   514 XXXXXXXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNN 573
                            G  P           +N  +    GSI+  L   +S    D++ N
Sbjct:   528 LTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISP-LCGSSSYLSFDVTEN 586

Query:   574 NLLGKIPSSFG---NLQGM-IDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA 629
                G IP   G   NL  + +        +P  F    E+  L ++ +NS  G+    L 
Sbjct:   587 GFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDIS-RNSLSGIIPVELG 645

Query:   630 IYSLM---DLSNNQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSH 686
             +   +   DL+NN LSG IP                N+  G++P+   +L  + TL L  
Sbjct:   646 LCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDG 705

Query:   687 NSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
             NSL+G IPQ    LQ L +L L  N+LSG +P +
Sbjct:   706 NSLNGSIPQEIGNLQALNALNLEENQLSGPLPST 739

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024833001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (814 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	757
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-93
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-90
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  312 bits (801), Expect = 1e-93
 Identities = 235/678 (34%), Positives = 328/678 (48%), Gaps = 95/678 (14%)

Query: 5   SLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSS 64
             L+  L   F  LN + L   E +   LL FKS          S +  L  L  WNSS+
Sbjct: 10  PYLIFMLFFLF--LNFSMLHAEELE--LLLSFKS----------SINDPLKYLSNWNSSA 55

Query: 65  DCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQG 124
           D C W+ + C +   S  V  +DL+        ++  + + IFR+  + T++LS N + G
Sbjct: 56  DVCLWQGITCNN---SSRVVSIDLSG-----KNISGKISSAIFRLPYIQTINLSNNQLSG 107

Query: 125 EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN 184
            +P   F   + L YL+L +NN  GSIP        LE LDLS N + G++ + +    +
Sbjct: 108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSS 165

Query: 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244
           LK L L  N++ G+IP  + NLT+L  L+L  N+  G IP  L Q++ L+ + L  N+LS
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 245 GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG 304
           GEIP +IG L ++  L L  N LTG IP S+ N+  L  L L  N LSG I   +F LQ 
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285

Query: 305 MKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELE 364
           + SL L  N                        S+ G IP  +     L  L L  N   
Sbjct: 286 LISLDLSDN------------------------SLSGEIPELVIQLQNLEILHLFSNNFT 321

Query: 365 GTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS 423
           G  P  L+ L  L  + L  N  +G +P  L +  NL+VL LS NN +GE+PE +  S +
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN 381

Query: 424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA-FGSDSLVGHVDISSNRFS 482
           +  L+L SN+  G +PKS+     L  + L +NSFSGE P+ F    LV  +DIS+N   
Sbjct: 382 LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441

Query: 483 GEVPSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSS 540
           G + S      ++ MLSL+ NKF G LP        L++LDL  N  +G  P  L  LS 
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500

Query: 541 LQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLP 600
           L  L L    L G I D LS+   L  LDLS+N L G+IP+SF  +              
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP------------- 547

Query: 601 EIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNL 660
                                        + S +DLS NQLSGEIP +LG+++ L  +N+
Sbjct: 548 -----------------------------VLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578

Query: 661 SYNQLQGNIPSTFGNLEI 678
           S+N L G++PST   L I
Sbjct: 579 SHNHLHGSLPSTGAFLAI 596

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  304 bits (780), Expect = 1e-90
 Identities = 210/613 (34%), Positives = 311/613 (50%), Gaps = 75/613 (12%)

Query: 133 NLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192
           N +R+  +DL   N++G I S +F L Y++ ++LS N + G                   
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP------------------ 108

Query: 193 NLIQGQIPAEIGNLT-NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI 251
                 IP +I   + +L  L+L  N F+G IP   +    LETLDL  N LSGEIP DI
Sbjct: 109 ------IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDI 160

Query: 252 GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLG 311
           G+ +++ +L L  N L G IP S+ N+T L  L L SN L G+I   L  ++ +K +YLG
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 312 GNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWL 371
            N L                         G IP  +   T L  LDL  N L G  P  L
Sbjct: 221 YNNLS------------------------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256

Query: 372 SEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLS 430
             L NL  + L  N L+G +PP +F  + L  L LS N+ SGE+PE + Q  ++ +L L 
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316

Query: 431 SNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA-FGSDSLVGHVDISSNRFSGEVPSSF 489
           SNNF+G +P +++++ RL VL L +N FSGE P   G  + +  +D+S+N  +GE+P   
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376

Query: 490 GVT--ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLR 547
             +  +  L L  N   G++P++L     L+ + L DN+ +GE P+  ++L  +  L++ 
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436

Query: 548 NTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPV 607
           N  L+G I     ++ SLQ+L L+ N   G +P SFG+ +                   +
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR-------------------L 477

Query: 608 EIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG 667
           E  DL  N  +        SL+    + LS N+LSGEIP  L S K L SL+LS+NQL G
Sbjct: 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537

Query: 668 NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQI 727
            IP++F  + +L  LDLS N LSG+IP+    ++ L  + +S+N L G +P +      I
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF-LAI 596

Query: 728 DPVIYANNSGLCG 740
           +    A N  LCG
Sbjct: 597 NASAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 95.7 bits (238), Expect = 2e-20
 Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 3/120 (2%)

Query: 624 SSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLD 683
           S+K       + L N  L G IP+ +  L+ L+S+NLS N ++GNIP + G++  LE LD
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 684 LSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIY--ANNSGLCGM 741
           LS+NS +G IP++  +L  L  L L+ N LSGR+P +    R +    +   +N+GLCG+
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG-GRLLHRASFNFTDNAGLCGI 531

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 2e-14
 Identities = 34/89 (38%), Positives = 55/89 (61%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI 555
           L L      G +P ++S L  LQ ++L  N++ G  P  L  ++SL+VL+L   +  GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 556 TDGLSNLTSLQILDLSNNNLLGKIPSSFG 584
            + L  LTSL+IL+L+ N+L G++P++ G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 36/88 (40%), Positives = 54/88 (61%)

Query: 188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEI 247
           L LD+  ++G IP +I  L +L  ++L  N   G IP SL  +  LE LDL  NS +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 248 PEDIGTLANITILALSNNALTGAIPQSI 275
           PE +G L ++ IL L+ N+L+G +P ++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 2e-13
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 1/110 (0%)

Query: 164 LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGI 223
           L L    + G + + ++ L++L+ + L  N I+G IP  +G++T+L  L L  N F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 224 PLSLLQLRKLETLDLQRNSLSGEIPEDIGT-LANITILALSNNALTGAIP 272
           P SL QL  L  L+L  NSLSG +P  +G  L +      ++NA    IP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.5 bits (170), Expect = 4e-12
 Identities = 31/84 (36%), Positives = 51/84 (60%)

Query: 212 LSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAI 271
           L L      G IP  + +LR L++++L  NS+ G IP  +G++ ++ +L LS N+  G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 272 PQSIRNMTKLVTLRLDSNVLSGEI 295
           P+S+  +T L  L L+ N LSG +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 6e-12
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 42/135 (31%)

Query: 544 LNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIF 603
           L L N  L G I + +S L  LQ ++LS N++ G IP S G++  +              
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL-------------- 468

Query: 604 SFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYN 663
                                        ++DLS N  +G IP SLG L  L+ LNL+ N
Sbjct: 469 ----------------------------EVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500

Query: 664 QLQGNIPSTFGNLEI 678
            L G +P+  G   +
Sbjct: 501 SLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 3e-10
 Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 42/133 (31%)

Query: 520 LDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKI 579
           L L +  L G  P  +S+L  LQ +NL   ++ G+I   L ++TSL++LDLS N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 580 PSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNN 639
           P S G L                                        SL I   ++L+ N
Sbjct: 483 PESLGQL---------------------------------------TSLRI---LNLNGN 500

Query: 640 QLSGEIPSSLGSL 652
            LSG +P++LG  
Sbjct: 501 SLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 4e-10
 Identities = 32/88 (36%), Positives = 50/88 (56%)

Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
           L L +  L G IP+ +  LR+L+ ++LS N+I G +   +  + +L+ L L  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSL 227
           P  +G LT+L  L+L  N  SG +P +L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 5e-10
 Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 1/88 (1%)

Query: 356 LDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGEL 414
           L L    L G  P  +S+L +L ++ LS N + G++PP L    +L VL LS N+F+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 415 PETIGQSTSVMVLMLSSNNFSGHVPKSI 442
           PE++GQ TS+ +L L+ N+ SG VP ++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 55.2 bits (134), Expect = 6e-10
 Identities = 27/60 (45%), Positives = 34/60 (56%)

Query: 654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
            LKSL+LS N+L       F  L  L+ LDLS N+L+   P+ F+ L  L SL LS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 32/84 (38%), Positives = 52/84 (61%)

Query: 381 LSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPK 440
           L +  L G +P  + + R+L  + LS N+  G +P ++G  TS+ VL LS N+F+G +P+
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 441 SISNIYRLLVLDLSNNSFSGEFPA 464
           S+  +  L +L+L+ NS SG  PA
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 1e-09
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 18/121 (14%)

Query: 69  WEMVRCR--SRGPSQEVTGLDLNN-----LFPLDSIVTSVVLAPIFRIRSLMTLDLSYNS 121
           W    C+  S      + GL L+N       P D          I ++R L +++LS NS
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND----------ISKLRHLQSINLSGNS 453

Query: 122 MQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAG 181
           ++G +P +   ++T L  LDL  N+ NGSIP  L  L  L  L+L+ N++ G++ + + G
Sbjct: 454 IRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512

Query: 182 L 182
            
Sbjct: 513 R 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 8e-09
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 403 LVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEF 462
           L L      G +P  I +   +  + LS N+  G++P S+ +I  L VLDLS NSF+G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 463 PA-FGSDSLVGHVDISSNRFSGEVPSSFG 490
           P   G  + +  ++++ N  SG VP++ G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-08
 Identities = 30/80 (37%), Positives = 41/80 (51%)

Query: 236 LDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEI 295
           L L    L G IP DI  L ++  + LS N++ G IP S+ ++T L  L L  N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 296 STWLFDLQGMKSLYLGGNKL 315
              L  L  ++ L L GN L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK 174
           L L    ++G +P    + L  L  ++L  N++ G+IP  L ++  LE LDLS N+  G 
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 175 LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG--GIP 224
           +   +  L +L+ L L+ N + G++PA +G    LH+ S      +G  GIP
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 53/228 (23%), Positives = 76/228 (33%), Gaps = 59/228 (25%)

Query: 507 LPQNLSNLSLLQHLDLHDNNLTGEFPAF---LSQLSSLQVLNLRNTALEGSITDGL---- 559
           L Q L+    LQ LDL DN L  +       L + SSLQ L L N  L       L    
Sbjct: 73  LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 560 -SNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKN 618
                +L+ L L  N L                    L             +DL      
Sbjct: 133 KDLPPALEKLVLGRNRL---------EGASCEALAKALR----------ANRDLKE---- 169

Query: 619 SKRGLSSKSLAIYSLMDLSNNQLSGE-IPS---SLGSLKGLKSLNLSYNQLQ----GNIP 670
                          ++L+NN +    I +    L +   L+ L+L+ N L       + 
Sbjct: 170 ---------------LNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214

Query: 671 STFGNLEILETLDLSHNSLSGKIPQTFAK-----LQQLTSLYLSNNKL 713
            T  +L+ LE L+L  N+L+       A         L +L LS N +
Sbjct: 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 9e-08
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 427 LMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA-FGSDSLVGHVDISSNRFSGEV 485
           L L +    G +P  IS +  L  ++LS NS  G  P   GS + +  +D+S N F+G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 486 PSSFG-VTIL-MLSLSENKFSGQLPQNLSNLSL 516
           P S G +T L +L+L+ N  SG++P  L    L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 68/268 (25%), Positives = 102/268 (38%), Gaps = 39/268 (14%)

Query: 110 RSLMTLDLSYNSMQGEVPGT-----GFANLTRLTYLDLKDNNLNGSIPSQLFNLR---YL 161
            SL  L LS N       G      G      L  LDL DN L       L +L     L
Sbjct: 51  PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110

Query: 162 EFLDLSANAIE-GKLSSRVAGLK----NLKQLILDDNLIQGQIPAEIGNL----TNLHKL 212
           + L L+ N +    L     GLK     L++L+L  N ++G     +        +L +L
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 213 SLRQNKFSG-GIPL---SLLQLRKLETLDLQRNSLSGE----IPEDIGTLANITILALSN 264
           +L  N     GI      L     LE LDL  N L+ E    + E + +L ++ +L L +
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 265 NALTGAI-----PQSIRNMTKLVTLRLDSNVLSGE----ISTWLFDLQGMKSLYLGGNKL 315
           N LT A         +     L+TL L  N ++ +    ++  L + + +  L L GNK 
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

Query: 316 KWNDN-----VSIVPKCMLTELSLRSCS 338
                       + P   L  L ++  S
Sbjct: 291 GEEGAQLLAESLLEPGNELESLWVKDDS 318

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 24/59 (40%), Positives = 31/59 (52%)

Query: 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575
           L+ LDL +N LT         L +L+VL+L    L     +  S L SL+ LDLS NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 67/249 (26%), Positives = 107/249 (42%), Gaps = 8/249 (3%)

Query: 143 KDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAE 202
             +N    +PS L  L  L+ L  S  +      + +  L  L  L L+ N ++  I  E
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSEN-LLNLLPLPSLDLNLNRLRSNIS-E 111

Query: 203 IGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILAL 262
           +  LTNL  L L  N  +   PL  L    L+ LDL  N +   +P  +  L N+  L L
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 263 SNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVS 322
           S N L+  +P+ + N++ L  L L  N +S ++   +  L  ++ L L  N     + +S
Sbjct: 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN--SIIELLS 226

Query: 323 IVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILS 382
            +           S +    +P  +   + L  LDLS N++        S  NL  + LS
Sbjct: 227 SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSL-GSLTNLRELDLS 285

Query: 383 DNMLTGSLP 391
            N L+ +LP
Sbjct: 286 GNSLSNALP 294

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 9e-06
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLT 387
           L  ++L   S+RG+IP  L + T L  LDLS N   G+ P+ L +L +L  + L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 388 GSLPPPL 394
           G +P  L
Sbjct: 504 GRVPAAL 510

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 71/309 (22%), Positives = 109/309 (35%), Gaps = 56/309 (18%)

Query: 306 KSLYLGGNKLKWNDNVSIVPKC-MLTELSLRSCSVRGSIPLWLST----QTELTFLDLSE 360
             L L G  LK      ++PK   L  L L   ++       L++    Q  L  L LS 
Sbjct: 1   LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSL 60

Query: 361 NELEGTYPQWLSEL-------NLGTVILSDNMLTGSLPPP---LFESRNLSVLVLSRNNF 410
           NE         S L        L  + LSDN L          L  S +L  L L+ N  
Sbjct: 61  NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGL 120

Query: 411 SGELPETIGQS-----TSVMVLMLSSNNFSGHVPKSISNIYR----LLVLDLSNNSFSGE 461
                  + +       ++  L+L  N   G   ++++   R    L  L+L+NN     
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 462 -----FPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSL 516
                     ++  +  +D+++N  + E     G + L  +L+  K              
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDE-----GASALAETLASLKS------------- 222

Query: 517 LQHLDLHDNNLTGE-----FPAFLSQLSSLQVLNLRNTALE----GSITDGLSNLTSLQI 567
           L+ L+L DNNLT         A LS   SL  L+L    +       + + L+   SL  
Sbjct: 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE 282

Query: 568 LDLSNNNLL 576
           LDL  N   
Sbjct: 283 LDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 10/50 (20%)

Query: 26 PEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSS-SDCCRWEMVRC 74
            D + ALL FKS + GD           G L +WN S SD C W  V C
Sbjct: 1  LNDDRDALLAFKSSLNGDP---------SGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 24/55 (43%), Positives = 30/55 (54%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL 689
           DLSNN+L+     +   L  LK L+LS N L    P  F  L  L +LDLS N+L
Sbjct: 6   DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 4e-05
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 332 LSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVI-LSDNMLTGSL 390
           L L +  +RG IP  +S    L  ++LS N + G  P  L  +    V+ LS N   GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 391 PPPLFESRNLSVLVLSRNNFSGELPETIG 419
           P  L +  +L +L L+ N+ SG +P  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 25/205 (12%)

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNL-RNTALEGSITDGLSNLTSLQIL 568
           NL ++++ +      +N     P+ LS+L SL +L+    ++L+GS    L NL  L  L
Sbjct: 41  NLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSEN--LLNLLPLPSL 98

Query: 569 DLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSL 628
           DL+ N L   I                           +   DL  N       L     
Sbjct: 99  DLNLNRLRSNISELLELTN-------------------LTSLDLDNNNITDIPPLIGLLK 139

Query: 629 AIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNS 688
           +    +DLS+N++   +PS L +L  LK+L+LS+N L  ++P    NL  L  LDLS N 
Sbjct: 140 SNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197

Query: 689 LSGKIPQTFAKLQQLTSLYLSNNKL 713
           +S  +P     L  L  L LSNN +
Sbjct: 198 IS-DLPPEIELLSALEELDLSNNSI 221

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 46.6 bits (110), Expect = 5e-05
 Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 25/234 (10%)

Query: 424 VMVLMLSSNNFSGHVPKSI-SNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFS 482
           +  L+L +N     +P+++  NI  L     SN   S   PA   D+ +  +++S NR +
Sbjct: 201 ITTLILDNNELKS-LPENLQGNIKTLYAN--SNQLTS--IPATLPDT-IQEMELSINRIT 254

Query: 483 GEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFL-SQLSSL 541
            E+P      +  L L  NK S  LP+NL     L++L ++DN++    PA L S ++ L
Sbjct: 255 -ELPERLPSALQSLDLFHNKISC-LPENLPEE--LRYLSVYDNSIRT-LPAHLPSGITHL 309

Query: 542 QVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSF-GNLQGMIDTPSILPTLP 600
            V +   TAL  ++  GL  L        +  N L  +P+S    LQ +  + + +  LP
Sbjct: 310 NVQSNSLTALPETLPPGLKTLE-------AGENALTSLPASLPPELQVLDVSKNQITVLP 362

Query: 601 EIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKG 654
           E  + P  I  L V+ +N+   L     A   +M  S N L   +P SL   +G
Sbjct: 363 E--TLPPTITTLDVS-RNALTNLPENLPAALQIMQASRNNLV-RLPESLPHFRG 412

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
           +L +LDLS N +   +P   F  L  L  LDL  NNL    P     L  L  LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 171 I 171
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 26/229 (11%)

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS 554
            L L+ N+    +   L  L+ L  LDL +NN+T   P      S+L+ L+L +  +E S
Sbjct: 97  SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-S 154

Query: 555 ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIV 614
           +   L NL +L+ LDLS N+L               D P +L  L  + +  +    +  
Sbjct: 155 LPSPLRNLPNLKNLDLSFNDLS--------------DLPKLLSNLSNLNNLDLSGNKISD 200

Query: 615 NWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFG 674
                +   + + L      DLSNN +  E+ SSL +LK L  L LS N+L+ ++P + G
Sbjct: 201 LPPEIELLSALEEL------DLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252

Query: 675 NLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQM 723
           NL  LETLDLS+N +S     +   L  L  L LS N LS  +P    +
Sbjct: 253 NLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALL 299

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLI 195
            L  LDL +N L          L  L+ LDLS N +        +GL +L+ L L  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 20/60 (33%), Positives = 26/60 (43%)

Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL 243
           NLK L L +N +          L NL  L L  N  +   P +   L  L +LDL  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	757
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PLN03150	623	hypothetical protein; Provisional	99.53
PLN03150	623	hypothetical protein; Provisional	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.98
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.75
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.34
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.06
PRK15386	426	type III secretion protein GogB; Provisional	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.89
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.88
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.65
PRK15386	426	type III secretion protein GogB; Provisional	97.59
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.54
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.44
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.4
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.05
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.77
KOG4341	483	consensus F-box protein containing LRR [General fu	96.4
KOG4341	483	consensus F-box protein containing LRR [General fu	96.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.58
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.68
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.42
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.58
KOG4308	478	consensus LRR-containing protein [Function unknown	92.13
KOG4308	478	consensus LRR-containing protein [Function unknown	91.91
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.36
smart00370	26	LRR Leucine-rich repeats, outliers.	90.36
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.43
smart00370	26	LRR Leucine-rich repeats, outliers.	88.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.88
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.26
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.18
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.54

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5e-74  Score=689.87  Aligned_cols=584  Identities=38%  Similarity=0.610  Sum_probs=483.4

Q ss_pred             cHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeecccc
Q 041016           26 PEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAP  105 (757)
Q Consensus        26 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~  105 (757)
                      .++|++||++||+.+.   + +      .+.+.+|+...+||.|.||+|+.   .++|+.++|++.     .+.|.+++.
T Consensus        27 ~~~~~~~l~~~~~~~~---~-~------~~~~~~w~~~~~~c~w~gv~c~~---~~~v~~L~L~~~-----~i~~~~~~~   88 (968)
T PLN00113         27 HAEELELLLSFKSSIN---D-P------LKYLSNWNSSADVCLWQGITCNN---SSRVVSIDLSGK-----NISGKISSA   88 (968)
T ss_pred             CHHHHHHHHHHHHhCC---C-C------cccCCCCCCCCCCCcCcceecCC---CCcEEEEEecCC-----CccccCChH
Confidence            4689999999999985   2 4      45578998878999999999985   568999999986     778888889


Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016          106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL  185 (757)
Q Consensus       106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  185 (757)
                      +..+++|++|+|++|.+.|.+|...+..+++|++|+|++|.+++.+|.  +.+++|++|+|++|.+.+..|..++++++|
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL  166 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence            999999999999999999999966677999999999999999988885  568899999999999988888889999999


Q ss_pred             CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016          186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN  265 (757)
Q Consensus       186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  265 (757)
                      ++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|
T Consensus       167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  246 (968)
T PLN00113        167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN  246 (968)
T ss_pred             CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence            99999999988888988999999999999999988888888888999999999999988888888888889999999888


Q ss_pred             CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016          266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL  345 (757)
Q Consensus       266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  345 (757)
                      .+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.                        +.+|.
T Consensus       247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~------------------------~~~p~  302 (968)
T PLN00113        247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS------------------------GEIPE  302 (968)
T ss_pred             eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec------------------------cCCCh
Confidence            888888888888888888888888888878877877777777777777665                        66777


Q ss_pred             hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016          346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM  425 (757)
Q Consensus       346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  425 (757)
                      ++..+++|+.|++++|.+.+..|..+.                       .+++|+.|++++|.+++.+|..++.+++|+
T Consensus       303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------------------~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~  359 (968)
T PLN00113        303 LVIQLQNLEILHLFSNNFTGKIPVALT-----------------------SLPRLQVLQLWSNKFSGEIPKNLGKHNNLT  359 (968)
T ss_pred             hHcCCCCCcEEECCCCccCCcCChhHh-----------------------cCCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence            777777788887777777765555444                       445555555555555555555555555666


Q ss_pred             EEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccc
Q 041016          426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFS  504 (757)
Q Consensus       426 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~  504 (757)
                      .|++++|++.+.+|..+..+++|+.|++++|.+.+.+| .+..+++|+.|++++|++                      +
T Consensus       360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l----------------------~  417 (968)
T PLN00113        360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF----------------------S  417 (968)
T ss_pred             EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe----------------------e
Confidence            66666666655556556555566666666655555554 444444544444444433                      3


Q ss_pred             cccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccc
Q 041016          505 GQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG  584 (757)
Q Consensus       505 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~  584 (757)
                      +..|..|.+++.|+.|++++|.+++.+|..+..+++|++|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.
T Consensus       418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~  496 (968)
T PLN00113        418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG  496 (968)
T ss_pred             eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhh
Confidence            4455667788888889999888888888888888899999999999888888765 458899999999999998888877


Q ss_pred             cccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCC
Q 041016          585 NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQ  664 (757)
Q Consensus       585 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  664 (757)
                      ++..|                                          +.|+|++|++.+.+|..++++++|++|+|++|.
T Consensus       497 ~l~~L------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        497 SLSEL------------------------------------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             hhhcc------------------------------------------CEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence            66555                                          889999999999999999999999999999999


Q ss_pred             CCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCCCCC
Q 041016          665 LQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQ  742 (757)
Q Consensus       665 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc~~~  742 (757)
                      +++.+|..|..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|..+++.++...+ |.||+++||.+
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~-~~~n~~lc~~~  611 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA-VAGNIDLCGGD  611 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh-hcCCccccCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999 99999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.5e-59  Score=562.53  Aligned_cols=514  Identities=36%  Similarity=0.604  Sum_probs=438.5

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL  188 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  188 (757)
                      .+++.|+|++|.++|.++ ..|..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+.+..|.  ..+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence            468899999999998887 7889999999999999999988888765 899999999999998877665  457888899


Q ss_pred             EccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC
Q 041016          189 ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT  268 (757)
Q Consensus       189 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  268 (757)
                      ++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+.
T Consensus       146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence            99988888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016          269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS  348 (757)
Q Consensus       269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  348 (757)
                      +.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+.                        +.+|.++.
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------------------~~~p~~l~  281 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS------------------------GPIPPSIF  281 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee------------------------ccCchhHh
Confidence            888888888888888888888887777777777777777777766655                        56666777


Q ss_pred             CCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEE
Q 041016          349 TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLM  428 (757)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  428 (757)
                      .+++|++|++++|.+.+.                       +|..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus       282 ~l~~L~~L~Ls~n~l~~~-----------------------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  338 (968)
T PLN00113        282 SLQKLISLDLSDNSLSGE-----------------------IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ  338 (968)
T ss_pred             hccCcCEEECcCCeeccC-----------------------CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence            777777777777766654                       445556678899999999999999999999999999999


Q ss_pred             ccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcccccc
Q 041016          429 LSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQL  507 (757)
Q Consensus       429 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~  507 (757)
                      +++|.+.+.+|..+..+++|+.|++++|.+.+.+| .+.....|+.+++++|                      .+.+.+
T Consensus       339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n----------------------~l~~~~  396 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN----------------------SLEGEI  396 (968)
T ss_pred             CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC----------------------EecccC
Confidence            99999999999999999999999999999988777 5655666665555555                      455566


Q ss_pred             chhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCccccccc
Q 041016          508 PQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQ  587 (757)
Q Consensus       508 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~  587 (757)
                      |..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.++..+..+++|+.|++++|++.+.+|..+.   
T Consensus       397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~---  473 (968)
T PLN00113        397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG---  473 (968)
T ss_pred             CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc---
Confidence            77788999999999999999999999999999999999999999999999999999999999999999988876542   


Q ss_pred             ccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCc
Q 041016          588 GMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG  667 (757)
Q Consensus       588 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  667 (757)
                                                              ...|+.||+++|++++.+|..|.++++|++|+|++|++++
T Consensus       474 ----------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        474 ----------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG  513 (968)
T ss_pred             ----------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence                                                    2345899999999999999999999999999999999999


Q ss_pred             cCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCC-CCCCCCCCccccCCCCCC
Q 041016          668 NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP-QMDRQIDPVIYANNSGLC  739 (757)
Q Consensus       668 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~-~~~~~~~~~~~~gn~~lc  739 (757)
                      .+|+.+.++++|++|+|++|.+++.+|..+..+++|++|++++|+++|.+|..- .+..+.... +.+|+..+
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~-ls~N~l~~  585 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN-ISHNHLHG  585 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe-ccCCccee
Confidence            999999999999999999999999999999999999999999999999999752 233334444 66776554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.7e-42  Score=333.61  Aligned_cols=472  Identities=29%  Similarity=0.422  Sum_probs=257.3

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      ..++.+++++|.+. .+- ..+.++..|++|++++|+++ ..|++++++..++.++.++|++. .+|..+..+.+|+.++
T Consensus        45 v~l~~lils~N~l~-~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchh-hcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            35677777777775 333 45677777788888888777 67777777777777777777776 4555556666666666


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG  269 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  269 (757)
                      .++|.+. .+|++++.+..|+.++..+|+++ ..|..+.++.+|..+++.+|.+....|..+. ++.|++|+...|.+. 
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-  196 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-  196 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-
Confidence            6666655 45555666666666666666665 4455555555555555555555533333322 555555555555444 


Q ss_pred             ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchh-cc
Q 041016          270 AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW-LS  348 (757)
Q Consensus       270 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-l~  348 (757)
                      .+|+.++.+.+|+.|++..|++. ..| .|.++..|++++++.|++.                         .+|.. ..
T Consensus       197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-------------------------~lpae~~~  249 (565)
T KOG0472|consen  197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-------------------------MLPAEHLK  249 (565)
T ss_pred             cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-------------------------hhHHHHhc
Confidence            44555555555555555555544 223 3444444444444444433                         33333 33


Q ss_pred             CCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEE
Q 041016          349 TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLM  428 (757)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  428 (757)
                      +++++..||+.+|++.                        ..|+.+.-+.+|++||+++|.++ ..|..++++ .|+.|.
T Consensus       250 ~L~~l~vLDLRdNklk------------------------e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLK------------------------EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLA  303 (565)
T ss_pred             ccccceeeeccccccc------------------------cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehh
Confidence            6677777777777766                        45555556666777777777776 345566666 677777


Q ss_pred             ccCCcccccChHhhhccCC---CCEE-------EccCCc---------ccccCCCCCCCCcccEEECcCCccccCCCchh
Q 041016          429 LSSNNFSGHVPKSISNIYR---LLVL-------DLSNNS---------FSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF  489 (757)
Q Consensus       429 L~~n~l~~~~~~~l~~l~~---L~~L-------~ls~n~---------l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  489 (757)
                      +.+|.+.. +...+-+...   |++|       .++.-.         ..+.+|......+.+.|++++-+++......|
T Consensus       304 leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVf  382 (565)
T KOG0472|consen  304 LEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVF  382 (565)
T ss_pred             hcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHH
Confidence            77776652 2211111100   0000       000000         00112233334455566666655553332222


Q ss_pred             hhc----ccEEEccCCccccccchhccCCCCCCE-EeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCC
Q 041016          490 GVT----ILMLSLSENKFSGQLPQNLSNLSLLQH-LDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTS  564 (757)
Q Consensus       490 ~~~----l~~L~l~~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  564 (757)
                      ...    +...+++.|++. ++|..+..++.+.. +++++|.+ +.+|..++.+++|..|++++|.+. .+|..++.+..
T Consensus       383 ea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~  459 (565)
T KOG0472|consen  383 EAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR  459 (565)
T ss_pred             HHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhh
Confidence            211    445555555554 34444444433332 23333333 245555555555555555555544 34444455555


Q ss_pred             CCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCc
Q 041016          565 LQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE  644 (757)
Q Consensus       565 L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~  644 (757)
                      |+.||++.|                                                                  +|. .
T Consensus       460 Lq~LnlS~N------------------------------------------------------------------rFr-~  472 (565)
T KOG0472|consen  460 LQTLNLSFN------------------------------------------------------------------RFR-M  472 (565)
T ss_pred             hheeccccc------------------------------------------------------------------ccc-c
Confidence            555555555                                                                  444 4


Q ss_pred             CCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcce
Q 041016          645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS  714 (757)
Q Consensus       645 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  714 (757)
                      +|..+..+..|+.+-.++|++....|+.+.++.+|.+|||.+|.+. .+|..++++++|++|++++|+|.
T Consensus       473 lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  473 LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            5555555555555555556666666666666666666677666666 45556667777777777777766

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-38  Score=320.84  Aligned_cols=363  Identities=23%  Similarity=0.243  Sum_probs=184.9

Q ss_pred             CCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccc
Q 041016          137 LTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ  216 (757)
Q Consensus       137 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  216 (757)
                      -+.||+++|.++..-+..|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+.+-.+++..++.|+.|||+.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            344555555555544555555555555555555554 2333333334455555555555544444455555555555555


Q ss_pred             cccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccc
Q 041016          217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEIS  296 (757)
Q Consensus       217 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  296 (757)
                      |.++.....+|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++                        ...+
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit------------------------tLp~  214 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT------------------------TLPQ  214 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc------------------------ccCH
Confidence            5554333333444444555555555554444444444445555555555544                        4444


Q ss_pred             hhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-
Q 041016          297 TWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-  375 (757)
Q Consensus       297 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-  375 (757)
                      ..|.++++|+.|+|..|++..++...|.+..+|+.|.+..|.+...-...|-.+.++++|+++.|+++..-..|+.+++ 
T Consensus       215 r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~  294 (873)
T KOG4194|consen  215 RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTS  294 (873)
T ss_pred             HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccch
Confidence            4444445555555555544444444444444444444444444444444455555566666666665544444444444 


Q ss_pred             ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccC
Q 041016          376 LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN  455 (757)
Q Consensus       376 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~  455 (757)
                      |+.|++++|.+...-++....+++|++|+|+.|+++...+..|..+..|++|.|++|.+...-...|..+.+|++||+++
T Consensus       295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~  374 (873)
T KOG4194|consen  295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS  374 (873)
T ss_pred             hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence            44444444444444455555666677777777766666666666666666666666666655555666666666666666


Q ss_pred             CcccccCC----CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcc
Q 041016          456 NSFSGEFP----AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEF  531 (757)
Q Consensus       456 n~l~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  531 (757)
                      |.++..+.    .|..+++|+.|++.+|++                      ..+...+|.+++.|++|||.+|.|..+-
T Consensus       375 N~ls~~IEDaa~~f~gl~~LrkL~l~gNql----------------------k~I~krAfsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  375 NELSWCIEDAAVAFNGLPSLRKLRLTGNQL----------------------KSIPKRAFSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             CeEEEEEecchhhhccchhhhheeecCcee----------------------eecchhhhccCcccceecCCCCcceeec
Confidence            66654333    233333333333333322                      2222344555555555555555555555


Q ss_pred             hhhccCCCCCCEEEcc
Q 041016          532 PAFLSQLSSLQVLNLR  547 (757)
Q Consensus       532 ~~~l~~l~~L~~L~Ls  547 (757)
                      |.+|..+ .|++|.+.
T Consensus       433 ~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  433 PNAFEPM-ELKELVMN  447 (873)
T ss_pred             ccccccc-hhhhhhhc
Confidence            5555544 45555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.5e-41  Score=326.78  Aligned_cols=474  Identities=28%  Similarity=0.402  Sum_probs=320.2

Q ss_pred             eccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccccc
Q 041016          101 VVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVA  180 (757)
Q Consensus       101 ~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  180 (757)
                      .+.+.+.++..+.+|++++|+++ ..| .+++.+..++.++.++|.++ .+|++++.+.+|+.++.++|.+. ..++.++
T Consensus        59 ~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~  134 (565)
T KOG0472|consen   59 VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIG  134 (565)
T ss_pred             hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHH
Confidence            45567889999999999999998 778 78999999999999999999 89999999999999999999998 6778889


Q ss_pred             CCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q 041016          181 GLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITIL  260 (757)
Q Consensus       181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  260 (757)
                      .+..|+.++..+|+++ ..|.++.++.+|..+++.+|++....|. .-+++.|++||...|-++ .+|..++.+.+|.-|
T Consensus       135 ~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~L  211 (565)
T KOG0472|consen  135 RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELL  211 (565)
T ss_pred             HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHH
Confidence            9999999999999998 6888999999999999999999955554 444999999999999887 789999999999999


Q ss_pred             EccCCCCCCccchhhhcCCCCCEEEccCCccccccchh-hhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccC
Q 041016          261 ALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTW-LFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSV  339 (757)
Q Consensus       261 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~  339 (757)
                      ++..|++. ..| .|..|..|.+++++.|.+. .+|.. ..++.++..||+..|+++..+.+ +.-..+|++|++++|.+
T Consensus       212 yL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~i  287 (565)
T KOG0472|consen  212 YLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDI  287 (565)
T ss_pred             Hhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH-HHHhhhhhhhcccCCcc
Confidence            99999998 566 8999999999999999997 45554 45899999999999999833322 11222344444444444


Q ss_pred             ccCcchhccCCCCCCEEEccCCcccCcccccccCcc---ccEEEc--CCCcCCCCCCCCccCCCCCCEEeCcCccccccC
Q 041016          340 RGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN---LGTVIL--SDNMLTGSLPPPLFESRNLSVLVLSRNNFSGEL  414 (757)
Q Consensus       340 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---L~~L~l--~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~  414 (757)
                      + ..|..++++ .|+.|.+.+|.+...-.+.+..-+   |++|.=  ....++....      ..-..-+.    ..+..
T Consensus       288 s-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~------~~e~~~t~----~~~~~  355 (565)
T KOG0472|consen  288 S-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG------GTETAMTL----PSESF  355 (565)
T ss_pred             c-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc------cccccCCC----CCCcc
Confidence            4 233344444 444444444444321111111110   111110  0000000000      00000000    00011


Q ss_pred             CcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhc--
Q 041016          415 PETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVT--  492 (757)
Q Consensus       415 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--  492 (757)
                      | ......+.+.|++++-+++. +|........                    -.-...++++.|++. ++|..+...  
T Consensus       356 ~-~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~--------------------~~~Vt~VnfskNqL~-elPk~L~~lke  412 (565)
T KOG0472|consen  356 P-DIYAIITTKILDVSDKQLTL-VPDEVFEAAK--------------------SEIVTSVNFSKNQLC-ELPKRLVELKE  412 (565)
T ss_pred             c-chhhhhhhhhhccccccccc-CCHHHHHHhh--------------------hcceEEEecccchHh-hhhhhhHHHHH
Confidence            1 12224455666666666663 3333222222                    111233444444443 344443332  


Q ss_pred             -ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECc
Q 041016          493 -ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS  571 (757)
Q Consensus       493 -l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls  571 (757)
                       ++.+.+++|.+ +.+|..++.+++|+.|++++|-+. .+|..++.+..|+.|+++.|+|. .+|..+..+..++.+-.+
T Consensus       413 lvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas  489 (565)
T KOG0472|consen  413 LVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLAS  489 (565)
T ss_pred             HHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence             44455555554 367788899999999999999888 78889999999999999999987 677776666666666666


Q ss_pred             CCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccC
Q 041016          572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGS  651 (757)
Q Consensus       572 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~  651 (757)
                      +|++....|+.+.++.+|                                          +.|||.+|.+. .+|..+++
T Consensus       490 ~nqi~~vd~~~l~nm~nL------------------------------------------~tLDL~nNdlq-~IPp~Lgn  526 (565)
T KOG0472|consen  490 NNQIGSVDPSGLKNMRNL------------------------------------------TTLDLQNNDLQ-QIPPILGN  526 (565)
T ss_pred             cccccccChHHhhhhhhc------------------------------------------ceeccCCCchh-hCChhhcc
Confidence            666654444333333332                                          56666666665 55666666


Q ss_pred             CCCCCEEeCCCCCCC
Q 041016          652 LKGLKSLNLSYNQLQ  666 (757)
Q Consensus       652 l~~L~~L~Ls~N~l~  666 (757)
                      +++|++|++++|.|+
T Consensus       527 mtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  527 MTNLRHLELDGNPFR  541 (565)
T ss_pred             ccceeEEEecCCccC
Confidence            666666666666665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1e-37  Score=316.71  Aligned_cols=394  Identities=24%  Similarity=0.257  Sum_probs=342.7

Q ss_pred             cccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCc
Q 041016           67 CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN  146 (757)
Q Consensus        67 c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~  146 (757)
                      |.-.-..|+.    .++.+++-+       .+.|.+|+      .-+.||+|+|.+.. +....|.++++|+.+++.+|.
T Consensus        52 c~~~lldcs~----~~lea~~~~-------~l~g~lp~------~t~~LdlsnNkl~~-id~~~f~nl~nLq~v~l~~N~  113 (873)
T KOG4194|consen   52 CNTRLLDCSD----RELEAIDKS-------RLKGFLPS------QTQTLDLSNNKLSH-IDFEFFYNLPNLQEVNLNKNE  113 (873)
T ss_pred             CCceeeecCc----ccccccccc-------ccCCcCcc------ceeeeecccccccc-CcHHHHhcCCcceeeeeccch
Confidence            5555666764    234444433       23444443      45789999999984 444789999999999999999


Q ss_pred             CCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCcc
Q 041016          147 LNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLS  226 (757)
Q Consensus       147 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  226 (757)
                      ++ .+|...+...+|+.|+|.+|.|+.+..+.+..++.|+.|||+.|.++.+.-..|..-.++++|+|++|.|+..-...
T Consensus       114 Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~  192 (873)
T KOG4194|consen  114 LT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH  192 (873)
T ss_pred             hh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc
Confidence            99 89988888889999999999999999999999999999999999999666667888889999999999999888889


Q ss_pred             ccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCc
Q 041016          227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMK  306 (757)
Q Consensus       227 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  306 (757)
                      |.++.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.---.|.++++|+.|.+..|.+.......|..+.+++
T Consensus       193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme  272 (873)
T KOG4194|consen  193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME  272 (873)
T ss_pred             ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence            99999999999999999977778889999999999999999855456789999999999999999987778899999999


Q ss_pred             EEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCc
Q 041016          307 SLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNM  385 (757)
Q Consensus       307 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~  385 (757)
                      +|+|+.|++.....+.+.+...|+.|+++.|.|...-++.++.+++|+.|++++|+++...+..|..+. |++|.++.|.
T Consensus       273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             eeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            999999999999999999999999999999999988888899999999999999999988888998887 9999999999


Q ss_pred             CCCCCCCCccCCCCCCEEeCcCccccccCCc---ccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccC
Q 041016          386 LTGSLPPPLFESRNLSVLVLSRNNFSGELPE---TIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEF  462 (757)
Q Consensus       386 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~  462 (757)
                      ++..-...|..+++|++|||++|.++..+.+   .|.++++|+.|++.+|++..+.-.+|.++..|++|++.+|.+...-
T Consensus       353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq  432 (873)
T KOG4194|consen  353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ  432 (873)
T ss_pred             hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec
Confidence            9876666777889999999999999876654   5677999999999999999887889999999999999999998766


Q ss_pred             C-CCCCCCcccEEECcCCc
Q 041016          463 P-AFGSDSLVGHVDISSNR  480 (757)
Q Consensus       463 ~-~~~~~~~L~~L~l~~n~  480 (757)
                      + +|..+ .|++|.+..-.
T Consensus       433 ~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  433 PNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             ccccccc-hhhhhhhcccc
Confidence            6 77777 88888776543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3.1e-37  Score=329.92  Aligned_cols=502  Identities=30%  Similarity=0.349  Sum_probs=358.3

Q ss_pred             eccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccccc
Q 041016          101 VVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVA  180 (757)
Q Consensus       101 ~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  180 (757)
                      .+|..+..-..++.|+++.|.+. ..|-++..+.-+|+.||+++|.+. ..|..+..+++|+.|+++.|.+. ..|....
T Consensus        12 ~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~   88 (1081)
T KOG0618|consen   12 LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCS   88 (1081)
T ss_pred             ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhh
Confidence            34555555556788888888775 444455666666899999988887 78888888888999999888887 4567778


Q ss_pred             CCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEE
Q 041016          181 GLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITIL  260 (757)
Q Consensus       181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  260 (757)
                      ++.+|+++.|.+|.+. ..|..+..+++|++|++++|++. .+|..+..+..+..+..++|....    .++... ++.+
T Consensus        89 ~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~-ik~~  161 (1081)
T KOG0618|consen   89 NMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQTS-IKKL  161 (1081)
T ss_pred             hhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hhcccc-chhh
Confidence            8888888888888877 68888888888888888888887 777778888888888888883221    222222 7777


Q ss_pred             EccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCc
Q 041016          261 ALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVR  340 (757)
Q Consensus       261 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~  340 (757)
                      ++..|.+.+.++..+..++.  .|+|.+|.+.   -..+..+.+|+.+....|++...+                     
T Consensus       162 ~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~---------------------  215 (1081)
T KOG0618|consen  162 DLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE---------------------  215 (1081)
T ss_pred             hhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---------------------
Confidence            88888887777777776666  6788888765   233556667777777766655211                     


Q ss_pred             cCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCC
Q 041016          341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQ  420 (757)
Q Consensus       341 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~  420 (757)
                             -.-++++.|+.++|.++...+                       .  ....+|+++++++|++++ +|++++.
T Consensus       216 -------~~g~~l~~L~a~~n~l~~~~~-----------------------~--p~p~nl~~~dis~n~l~~-lp~wi~~  262 (1081)
T KOG0618|consen  216 -------ISGPSLTALYADHNPLTTLDV-----------------------H--PVPLNLQYLDISHNNLSN-LPEWIGA  262 (1081)
T ss_pred             -------ecCcchheeeeccCcceeecc-----------------------c--cccccceeeecchhhhhc-chHHHHh
Confidence                   122456666666666552211                       1  112467777777777763 4577777


Q ss_pred             CCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhc---ccEEE
Q 041016          421 STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVT---ILMLS  497 (757)
Q Consensus       421 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~---l~~L~  497 (757)
                      +.+|+.++..+|+++ .+|..+....+|+.|.+..|.+.-..|......+|+.|++..|++....+..+...   +..+.
T Consensus       263 ~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln  341 (1081)
T KOG0618|consen  263 CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLN  341 (1081)
T ss_pred             cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHh
Confidence            888888888888775 66777777778888888888877555566677888888888888776555333322   55566


Q ss_pred             ccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccc
Q 041016          498 LSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG  577 (757)
Q Consensus       498 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  577 (757)
                      .+.|++.......=..++.|+.|.+.+|.+++..-..+.++..|++|+|++|++.......+.++..|++|++|+|+++ 
T Consensus       342 ~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-  420 (1081)
T KOG0618|consen  342 VSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-  420 (1081)
T ss_pred             hhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence            6666665333222234567888888888888777777888888999999999888555567888888899999999886 


Q ss_pred             cCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCE
Q 041016          578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKS  657 (757)
Q Consensus       578 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~  657 (757)
                      .+|.++.++..|                                          ++|...+|++. ..| .+..++.|+.
T Consensus       421 ~Lp~tva~~~~L------------------------------------------~tL~ahsN~l~-~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  421 TLPDTVANLGRL------------------------------------------HTLRAHSNQLL-SFP-ELAQLPQLKV  456 (1081)
T ss_pred             hhhHHHHhhhhh------------------------------------------HHHhhcCCcee-ech-hhhhcCcceE
Confidence            666777666555                                          67777888887 566 7888899999


Q ss_pred             EeCCCCCCCcc-CCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCC
Q 041016          658 LNLSYNQLQGN-IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQ  722 (757)
Q Consensus       658 L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~  722 (757)
                      +|+|.|+++.. +|..... ++|++||+++|.-.-..-..|..+.++...++.-|    .+|++.+
T Consensus       457 lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~~~  517 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDGNV  517 (1081)
T ss_pred             EecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC----CCCcccc
Confidence            99999988754 3443333 78999999999855455566777777777777777    4555533

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.4e-36  Score=323.12  Aligned_cols=480  Identities=28%  Similarity=0.315  Sum_probs=313.3

Q ss_pred             eCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccc
Q 041016          141 DLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       141 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  220 (757)
                      |++...+. .||..+..-..++.|+++.|.+...+-+...+.-+|+.|++++|++. ..|..+..+.+|+.|+++.|.+.
T Consensus         4 d~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~   81 (1081)
T KOG0618|consen    4 DASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR   81 (1081)
T ss_pred             ccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh
Confidence            34444444 44444444444555555555444322223333334555555555554 45555555556666666666555


Q ss_pred             cccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhh
Q 041016          221 GGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF  300 (757)
Q Consensus       221 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~  300 (757)
                       ..|.+..++.+|+++.|.+|.+. ..|..+..+++|+.|++++|.+. .+|..+..++.++.+..++|.....    ++
T Consensus        82 -~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg  154 (1081)
T KOG0618|consen   82 -SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LG  154 (1081)
T ss_pred             -hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hc
Confidence             44455555566666666655554 45555555566666666666555 4555555555555555555511111    11


Q ss_pred             ccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEE
Q 041016          301 DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTV  379 (757)
Q Consensus       301 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L  379 (757)
                      ... ++.+++..|.+.                        +.++..+..+..  .+++++|.+. .  ..+..+. ++.+
T Consensus       155 ~~~-ik~~~l~~n~l~------------------------~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l  204 (1081)
T KOG0618|consen  155 QTS-IKKLDLRLNVLG------------------------GSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVL  204 (1081)
T ss_pred             ccc-chhhhhhhhhcc------------------------cchhcchhhhhe--eeecccchhh-h--hhhhhccchhhh
Confidence            111 334444443333                        333333333333  3555555544 1  1122222 4444


Q ss_pred             EcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCccc
Q 041016          380 ILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFS  459 (757)
Q Consensus       380 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  459 (757)
                      ....|++....    ...++++.|+.++|.++...+.  .-..+|+++++++|+++ .+|+++..+.+|+.++..+|.++
T Consensus       205 ~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~  277 (1081)
T KOG0618|consen  205 HCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV  277 (1081)
T ss_pred             hhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH
Confidence            44444443211    1236899999999998843332  23568999999999999 46699999999999999999996


Q ss_pred             ccCCCCCCCCcccEEECcCCccccCCCchh-hhcccEEEccCCccccccchhccCCCC-CCEEeCcCCcccCcchhhccC
Q 041016          460 GEFPAFGSDSLVGHVDISSNRFSGEVPSSF-GVTILMLSLSENKFSGQLPQNLSNLSL-LQHLDLHDNNLTGEFPAFLSQ  537 (757)
Q Consensus       460 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~l~~  537 (757)
                      .....+....+|+.+.+..|.+....|..- ...+++|++..|++....+..+..... |..|+.+.|++.......=..
T Consensus       278 ~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~  357 (1081)
T KOG0618|consen  278 ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN  357 (1081)
T ss_pred             hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence            443378888899999999999987766554 345999999999998555545555444 788888888887433222223


Q ss_pred             CCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeec
Q 041016          538 LSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWK  617 (757)
Q Consensus       538 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  617 (757)
                      ++.|+.|++.+|.++......+.+..+||.|+|++|++.......+.++..                             
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~-----------------------------  408 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE-----------------------------  408 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH-----------------------------
Confidence            678999999999999888888999999999999999987433334444444                             


Q ss_pred             cCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCC-CCC
Q 041016          618 NSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI-PQT  696 (757)
Q Consensus       618 ~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~  696 (757)
                                   |+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.++++|+.+|+|.|.++... |..
T Consensus       409 -------------LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  409 -------------LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             -------------hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence                         488999999999 78899999999999999999998 556 7899999999999999998754 333


Q ss_pred             ccCCCCCCEEeCCCCc
Q 041016          697 FAKLQQLTSLYLSNNK  712 (757)
Q Consensus       697 l~~l~~L~~L~ls~N~  712 (757)
                      .. -+.|++||+++|.
T Consensus       473 ~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  473 LP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             CC-CcccceeeccCCc
Confidence            32 3899999999998

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.1e-34  Score=296.33  Aligned_cols=371  Identities=27%  Similarity=0.392  Sum_probs=268.2

Q ss_pred             CCCCCCEEeCCCCCCCCC-CCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCC
Q 041016          108 RIRSLMTLDLSYNSMQGE-VPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLK  186 (757)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  186 (757)
                      -++..+-.|+++|.|+|. +| .....++++++|.|....+. .+|+.++.|.+|++|.+++|++. .+...+..++.||
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR   81 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR   81 (1255)
T ss_pred             ccceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence            356677788889999854 77 77888999999999999988 88999999999999999999887 4456677888888


Q ss_pred             EEEccCccCC-ccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016          187 QLILDDNLIQ-GQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN  265 (757)
Q Consensus       187 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  265 (757)
                      .+++.+|++. .-+|..+-.+..|+.|||++|++. ..|..+..-+++-+|+|++|+|..+....|.+++.|-.|+|++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            8888888864 336777777888888888888887 66777777777778888888877443344567777777777777


Q ss_pred             CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016          266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL  345 (757)
Q Consensus       266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  345 (757)
                      ++. .+|+.+..+..|++|.|++|.+.-..-..+..++.|++|.+++.+-+                       ...+|.
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-----------------------l~N~Pt  216 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-----------------------LDNIPT  216 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-----------------------hhcCCC
Confidence            776 56666777777777777777665332233334444555555554432                       135677


Q ss_pred             hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016          346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM  425 (757)
Q Consensus       346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  425 (757)
                      .+..+.+|..+|++.|.+.                        .+|+.++.+++|+.|+|++|+++.. ....+.-.+|+
T Consensus       217 sld~l~NL~dvDlS~N~Lp------------------------~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lE  271 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLSENNLP------------------------IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLE  271 (1255)
T ss_pred             chhhhhhhhhccccccCCC------------------------cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhh
Confidence            7777777777777777776                        5677777788888888888888743 23344456788


Q ss_pred             EEEccCCcccccChHhhhccCCCCEEEccCCcccc-cCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcc
Q 041016          426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSG-EFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKF  503 (757)
Q Consensus       426 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l  503 (757)
                      +|+++.|+++ ..|.+++++++|+.|.+.+|++.- -+| .++.+..|+++..++|.+.                     
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE---------------------  329 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE---------------------  329 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc---------------------
Confidence            8888888887 678888888888888888887652 122 5555555554444444332                     


Q ss_pred             ccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccC
Q 041016          504 SGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT  556 (757)
Q Consensus       504 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  556 (757)
                        ..|+.+..|..|+.|.|+.|++. .+|+++.-++.|+.|++..|.-....|
T Consensus       330 --lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  330 --LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             --cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence              56777888888888888888877 678888888888888888887664444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.5e-33  Score=285.43  Aligned_cols=367  Identities=29%  Similarity=0.408  Sum_probs=235.3

Q ss_pred             CEEEccCCcCc-ccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccC
Q 041016          234 ETLDLQRNSLS-GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGG  312 (757)
Q Consensus       234 ~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  312 (757)
                      +-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.+..
T Consensus        10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~   87 (1255)
T KOG0444|consen   10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRD   87 (1255)
T ss_pred             ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhc
Confidence            33444444444 234444444444444444444443 34444444444444444444443 1222233444444444444


Q ss_pred             CCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCC
Q 041016          313 NKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPP  392 (757)
Q Consensus       313 n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  392 (757)
                      |++..                       .-+|..+..+..|+.||+++|++.                        ..|.
T Consensus        88 N~LKn-----------------------sGiP~diF~l~dLt~lDLShNqL~------------------------EvP~  120 (1255)
T KOG0444|consen   88 NNLKN-----------------------SGIPTDIFRLKDLTILDLSHNQLR------------------------EVPT  120 (1255)
T ss_pred             ccccc-----------------------CCCCchhcccccceeeecchhhhh------------------------hcch
Confidence            44331                       234455555666666666666655                        4556


Q ss_pred             CccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccc-cCCCCCCCCcc
Q 041016          393 PLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSG-EFPAFGSDSLV  471 (757)
Q Consensus       393 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~~~~~~~~~L  471 (757)
                      .+...+++-+|+|++|+|..+....|.+++.|-.|||++|++. ..|..+..+..|++|++++|++.- .+..+..+++|
T Consensus       121 ~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL  199 (1255)
T KOG0444|consen  121 NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSL  199 (1255)
T ss_pred             hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhh
Confidence            6666677777777777776444455667777888888888876 566667778888888888887642 12245556666


Q ss_pred             cEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcC
Q 041016          472 GHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTAL  551 (757)
Q Consensus       472 ~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  551 (757)
                      +.|.+++.+-+                     ...+|.++..+.+|..+|+|.|.+. ..|+++-++++|+.|+||+|++
T Consensus       200 ~vLhms~TqRT---------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  200 SVLHMSNTQRT---------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI  257 (1255)
T ss_pred             hhhhcccccch---------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence            66666665432                     1245666777778888888888777 7777777788888888888887


Q ss_pred             ccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccccccccc
Q 041016          552 EGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIY  631 (757)
Q Consensus       552 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  631 (757)
                      + .+........+|++|++|+|+++ .+|.++..++.|                                          
T Consensus       258 t-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL------------------------------------------  293 (1255)
T KOG0444|consen  258 T-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL------------------------------------------  293 (1255)
T ss_pred             e-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH------------------------------------------
Confidence            7 34444556677788888888876 667776665554                                          


Q ss_pred             CeEECcCCCCCC-cCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCC
Q 041016          632 SLMDLSNNQLSG-EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN  710 (757)
Q Consensus       632 ~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  710 (757)
                      +.|.+.+|+++- -||+.++.+.+|+++..++|.+. ..|+.+..+..|+.|.|++|++. ..|+++.-++-|+.||+..
T Consensus       294 ~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlre  371 (1255)
T KOG0444|consen  294 TKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRE  371 (1255)
T ss_pred             HHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccC
Confidence            566667777653 37888888888888888888886 77888888888888888888876 5688888888888888888


Q ss_pred             CcceecCC
Q 041016          711 NKLSGRIP  718 (757)
Q Consensus       711 N~l~g~iP  718 (757)
                      |+---..|
T Consensus       372 NpnLVMPP  379 (1255)
T KOG0444|consen  372 NPNLVMPP  379 (1255)
T ss_pred             CcCccCCC
Confidence            87543333

>PLN03210 Resistant to P

Probab=99.91  E-value=1.4e-22  Score=244.15  Aligned_cols=128  Identities=23%  Similarity=0.243  Sum_probs=76.1

Q ss_pred             CCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccC
Q 041016          421 STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSE  500 (757)
Q Consensus       421 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~  500 (757)
                      .++|+.|++++|...+.+|.++.++++|+.|++++|...+.+|....+++|+.|++++|.....+|.. ...++.|++++
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~-~~nL~~L~Ls~  855 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI-STNISDLNLSR  855 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc-ccccCEeECCC
Confidence            45666666666665556666666677777777776655555563335666777777766544333321 12355555655


Q ss_pred             CccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCc
Q 041016          501 NKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA  550 (757)
Q Consensus       501 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  550 (757)
                      |.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            5554 345566666666666666654333455555666666666666664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=1.6e-22  Score=243.63  Aligned_cols=146  Identities=24%  Similarity=0.264  Sum_probs=62.9

Q ss_pred             cceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcC
Q 041016          329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSR  407 (757)
Q Consensus       329 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~  407 (757)
                      |+.|.+.++.+. .+|..+ ...+|+.|++++|++.. ++..+..+. |+.++++++...+.+|. +..+++|+.|++++
T Consensus       591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence            444444444332 334433 23455555555555442 222223332 44444444433333332 33444555555555


Q ss_pred             ccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCcc
Q 041016          408 NNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRF  481 (757)
Q Consensus       408 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l  481 (757)
                      |.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|..  ..+|++|++++|.+
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i  737 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAI  737 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcc
Confidence            44434444444455555555555443333333332 3444555555554433333321  23344444444444

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=7.8e-26  Score=220.74  Aligned_cols=408  Identities=23%  Similarity=0.203  Sum_probs=248.1

Q ss_pred             CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC-ccCCccCchhccCCCCCCEEE
Q 041016          135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD-NLIQGQIPAEIGNLTNLHKLS  213 (757)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~  213 (757)
                      +.-+.++|..|.|+...|.+|+.+++|+.||||+|.|+.+.|.+|.++++|-.|-+.+ |+|+....+.|+++..|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            4567788888888877777888888888888888888888888888888877777666 778866666788888888888


Q ss_pred             ccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccc
Q 041016          214 LRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG  293 (757)
Q Consensus       214 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  293 (757)
                      +.-|++.-.....|..+++|..|.+..|.+...-...|..+..++.+.+..|.+...     .+++.+... +.      
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd-----CnL~wla~~-~a------  214 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD-----CNLPWLADD-LA------  214 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-----cccchhhhH-Hh------
Confidence            888888777777788888888888888887644334677777788777777763211     111111110 00      


Q ss_pred             ccchhhhccCCCcEEEccCCCCcCCCcccccCC-cccceeecCCccCccCcc-hhccCCCCCCEEEccCCcccCcccccc
Q 041016          294 EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK-CMLTELSLRSCSVRGSIP-LWLSTQTELTFLDLSENELEGTYPQWL  371 (757)
Q Consensus       294 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~  371 (757)
                      ..+..++...-..-..+.+.++..++...|... ..+.+=..+.|...+..| ..|..+++|+.|++++|+++++-+.+|
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence            011111222222222233333333333333211 011111122233333333 458889999999999999998888888


Q ss_pred             cCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccc-----cChHhhhcc
Q 041016          372 SELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG-----HVPKSISNI  445 (757)
Q Consensus       372 ~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~~~~l~~l  445 (757)
                      .... +++|.+..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|.+-.|.+.-     -..+++.+ 
T Consensus       295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~-  373 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK-  373 (498)
T ss_pred             cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh-
Confidence            8887 8888888888876656667778888888888888888888888888888888888776531     11122211 


Q ss_pred             CCCCEEEccCCcccccCCCCCCCCcccEEECcCCcccc---CCCch-------hh----hccc-EEEccCCccccccchh
Q 041016          446 YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSG---EVPSS-------FG----VTIL-MLSLSENKFSGQLPQN  510 (757)
Q Consensus       446 ~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~-------~~----~~l~-~L~l~~n~l~~~~~~~  510 (757)
                                +... ..|.-+....++.+.+++..+..   ..|.+       ..    .++. +...++..+ ..+|..
T Consensus       374 ----------~~~~-~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l-k~lp~~  441 (498)
T KOG4237|consen  374 ----------KSVV-GNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL-KLLPRG  441 (498)
T ss_pred             ----------CCCC-CCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch-hhcCCC
Confidence                      1101 11112222333334443332211   01110       00    0111 222232222 233332


Q ss_pred             ccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCC
Q 041016          511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNN  573 (757)
Q Consensus       511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n  573 (757)
                      +.  ..-+++++.+|.++ .+|..  .+.+| .+++++|++.......|.++++|.+|-|++|
T Consensus       442 iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  442 IP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             CC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            21  24567777777777 44444  45566 7788888877656667778888888877765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=8.8e-25  Score=213.45  Aligned_cols=362  Identities=25%  Similarity=0.297  Sum_probs=234.6

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccC-CcCCCcccccccCCCCCCEEE
Q 041016          111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA-NAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      .-..++|..|.|+ .||..+|+.+++||+||||+|.|+.+-|++|.+++.|..|-+.+ |+|+......|.++..|+.|.
T Consensus        68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3456777888887 67778888888888888888888888888888888877666655 888877778888888888888


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc------------ccCcccccCCC--
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS------------GEIPEDIGTLA--  255 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~l~~l~--  255 (757)
                      +.-|++.-...+.|..+++|..|.+..|.+...-..+|..+..++.+.+..|.+-            ...|..++...  
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            8888888777788888888888888888887444447777888888877766521            01111111111  


Q ss_pred             --------------------CCCEE---EccCCCCCCccc-hhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEcc
Q 041016          256 --------------------NITIL---ALSNNALTGAIP-QSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLG  311 (757)
Q Consensus       256 --------------------~L~~L---~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  311 (757)
                                          .++.+   -.+.+...+..| ..|..+++|++|++++|++++..+.+|.+...+++|+|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                                11111   112222333333 457888888888888888888888888888888888888


Q ss_pred             CCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCc-----cccccc------------Cc
Q 041016          312 GNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGT-----YPQWLS------------EL  374 (757)
Q Consensus       312 ~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-----~~~~~~------------~~  374 (757)
                      .|++..+..+.|.+...|+.|+|.+|+|+...|.+|.....|..|++-.|.+...     +-+|+.            .-
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~  386 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPG  386 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCc
Confidence            8888888888888888888888888888888888888888888888877766321     001111            01


Q ss_pred             cccEEEcCCCcCCC---CCCCCc---------cCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhh
Q 041016          375 NLGTVILSDNMLTG---SLPPPL---------FESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSI  442 (757)
Q Consensus       375 ~L~~L~l~~n~l~~---~~~~~l---------~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  442 (757)
                      .++.+.+++..+..   ..|+..         ..|+-+.+..=-.|+....+|..+  ....+++++.+|.++ .+|.. 
T Consensus       387 ~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~-~vp~~-  462 (498)
T KOG4237|consen  387 FVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAIT-SVPDE-  462 (498)
T ss_pred             hhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhc-ccCHH-
Confidence            14455555443321   111111         112222222211222222333322  234566777777777 44444 


Q ss_pred             hccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCC
Q 041016          443 SNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSN  479 (757)
Q Consensus       443 ~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n  479 (757)
                       .+.+| .+++++|+++..-. .|.+++.+.++-+++|
T Consensus       463 -~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  463 -LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             -HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence             44566 77777777764333 5566666666665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=4.2e-20  Score=206.15  Aligned_cols=263  Identities=27%  Similarity=0.351  Sum_probs=147.2

Q ss_pred             CCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEcc
Q 041016          351 TELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLS  430 (757)
Q Consensus       351 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  430 (757)
                      ..-..|+++.+.++ .+|..+.. .++.|++.+|+++. +|..   .++|++|++++|+++. +|..   .++|+.|+++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~~-~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLPA-HITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchhc-CCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            34567888888887 45554432 47777777777763 4432   3667777777777763 3432   3566777777


Q ss_pred             CCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchh
Q 041016          431 SNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQN  510 (757)
Q Consensus       431 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~  510 (757)
                      +|.+.. +|..   ..+|+.|++++|+++. +|.  ..++|+.|++++|++++.                       |..
T Consensus       271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~--~p~~L~~LdLS~N~L~~L-----------------------p~l  320 (788)
T PRK15387        271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLASL-----------------------PAL  320 (788)
T ss_pred             CCchhh-hhhc---hhhcCEEECcCCcccc-ccc--cccccceeECCCCccccC-----------------------CCC
Confidence            776652 3332   2356666666666652 232  124455555555555432                       111


Q ss_pred             ccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccc
Q 041016          511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMI  590 (757)
Q Consensus       511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~  590 (757)
                         ..+|+.|++++|.+++ +|..   ..+|++|+|++|++++ +|..   .++|+.|++++|.+.+ +|..        
T Consensus       321 ---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l--------  380 (788)
T PRK15387        321 ---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL--------  380 (788)
T ss_pred             ---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc--------
Confidence               1234555555555552 3321   1356666666666653 3322   2345556666666542 3321        


Q ss_pred             cCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCC
Q 041016          591 DTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP  670 (757)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  670 (757)
                                                           +..|+.|++++|++++ +|..   .++|+.|++++|++++ +|
T Consensus       381 -------------------------------------~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP  418 (788)
T PRK15387        381 -------------------------------------PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LP  418 (788)
T ss_pred             -------------------------------------ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CC
Confidence                                                 1223566667776663 4432   2456677777777764 44


Q ss_pred             cchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016          671 STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE  719 (757)
Q Consensus       671 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  719 (757)
                      ..+   .+|+.|++++|+++ .+|..+..+++|+.|++++|+|+|.+|.
T Consensus       419 ~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        419 MLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             cch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            432   35666777777776 4566677777777777777777776654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=4.2e-20  Score=206.14  Aligned_cols=263  Identities=27%  Similarity=0.351  Sum_probs=167.6

Q ss_pred             cceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCc
Q 041016          329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRN  408 (757)
Q Consensus       329 L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n  408 (757)
                      -..|+++++.++ .+|..+.  ++|+.|++.+|+++. +|...  ..|++|++++|+++. +|..   .++|+.|++++|
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~lp--~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALP--PELRTLEVSGNQLTS-LPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCCC--CCCcEEEecCCccCc-ccCc---ccccceeeccCC
Confidence            567999999998 6777665  489999999999985 45421  239999999999984 5543   468999999999


Q ss_pred             cccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCch
Q 041016          409 NFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSS  488 (757)
Q Consensus       409 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  488 (757)
                      .++. +|..   .++|+.|++++|+++. +|.   ..++|+.|++++|++++ +|.+  ...|+.|++++|++++ +|. 
T Consensus       273 ~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~-  339 (788)
T PRK15387        273 PLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPT-  339 (788)
T ss_pred             chhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC--cccccccccccCcccc-ccc-
Confidence            9874 4442   3678999999999984 444   24789999999999985 4432  2356677777777764 221 


Q ss_pred             hhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEE
Q 041016          489 FGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQIL  568 (757)
Q Consensus       489 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  568 (757)
                      +.                        .+|++|++++|++++ +|..   ..+|+.|++++|++.+ +|..   ..+|+.|
T Consensus       340 lp------------------------~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~L  387 (788)
T PRK15387        340 LP------------------------SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKEL  387 (788)
T ss_pred             cc------------------------cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceE
Confidence            11                        245555555555552 3321   2345555555555552 3322   2345666


Q ss_pred             ECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCcc
Q 041016          569 DLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSS  648 (757)
Q Consensus       569 ~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~  648 (757)
                      ++++|++++ +|..                                             ...++.|++++|++++ +|..
T Consensus       388 dLs~N~Lt~-LP~l---------------------------------------------~s~L~~LdLS~N~Lss-IP~l  420 (788)
T PRK15387        388 IVSGNRLTS-LPVL---------------------------------------------PSELKELMVSGNRLTS-LPML  420 (788)
T ss_pred             EecCCcccC-CCCc---------------------------------------------ccCCCEEEccCCcCCC-CCcc
Confidence            666665542 2221                                             1223556666666653 4432


Q ss_pred             ccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCc
Q 041016          649 LGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTF  697 (757)
Q Consensus       649 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  697 (757)
                      .   .+|+.|++++|+++ .+|+.+.++++|+.|+|++|++++..|..+
T Consensus       421 ~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        421 P---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             h---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            2   34556666666666 456666666666666666666666555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=1.9e-18  Score=194.51  Aligned_cols=41  Identities=7%  Similarity=0.019  Sum_probs=25.2

Q ss_pred             CCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCcccce
Q 041016           24 CCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEM   71 (757)
Q Consensus        24 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~g   71 (757)
                      ....+|...+++..+.+.   . |...   .+.-..|.+.+++|.-..
T Consensus        59 ~~~~~~~~~~~~~~~~l~---~-p~~~---~~~~~~~~~~~~fc~~~~   99 (754)
T PRK15370         59 TASPEEIKSKFECLRMLA---F-PAYA---DNIQYSRGGADQYCILSE   99 (754)
T ss_pred             CCCHHHHHHHHHHHHHhc---C-Cchh---hccccccCCCCcccccCC
Confidence            345677788888888886   2 3111   111234988888996544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=8.5e-19  Score=197.23  Aligned_cols=244  Identities=25%  Similarity=0.450  Sum_probs=117.2

Q ss_pred             ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccC
Q 041016          376 LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN  455 (757)
Q Consensus       376 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~  455 (757)
                      ...|+++++.++ .+|..+.  ++++.|++++|+++. +|..+.  ++|++|++++|+++ .+|..+.  .+|+.|++++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            455666666665 3444332  456666666666663 343332  35666666666665 3344332  2455666666


Q ss_pred             CcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhh
Q 041016          456 NSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAF  534 (757)
Q Consensus       456 n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  534 (757)
                      |.+. .+| .+.  .+|+.|++++|+++. +|..+..                        +|+.|++++|++++ +|..
T Consensus       251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~~------------------------sL~~L~Ls~N~Lt~-LP~~  301 (754)
T PRK15370        251 NRIT-ELPERLP--SALQSLDLFHNKISC-LPENLPE------------------------ELRYLSVYDNSIRT-LPAH  301 (754)
T ss_pred             CccC-cCChhHh--CCCCEEECcCCccCc-cccccCC------------------------CCcEEECCCCcccc-Cccc
Confidence            5554 333 221  244555555554442 2333333                        45555555555542 3322


Q ss_pred             ccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEe
Q 041016          535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIV  614 (757)
Q Consensus       535 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~  614 (757)
                      +.  ++|+.|++++|.++. +|..+  .++|+.|++++|.+++ +|..+                               
T Consensus       302 lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l-------------------------------  344 (754)
T PRK15370        302 LP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL-------------------------------  344 (754)
T ss_pred             ch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh-------------------------------
Confidence            21  245555555555552 23222  1355555555555542 22211                               


Q ss_pred             eeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCC
Q 041016          615 NWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP  694 (757)
Q Consensus       615 ~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  694 (757)
                                   ++.|+.|++++|+++ .+|..+.  ++|++|+|++|+++. +|..+.  .+|+.|++++|+++ .+|
T Consensus       345 -------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP  404 (754)
T PRK15370        345 -------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLP  404 (754)
T ss_pred             -------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCc
Confidence                         123355555555555 3444332  355566666665552 333332  24555566666555 233


Q ss_pred             CCc----cCCCCCCEEeCCCCcce
Q 041016          695 QTF----AKLQQLTSLYLSNNKLS  714 (757)
Q Consensus       695 ~~l----~~l~~L~~L~ls~N~l~  714 (757)
                      ..+    ..++.+..|++.+|+++
T Consensus       405 ~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        405 ESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhHHHHhhcCCCccEEEeeCCCcc
Confidence            322    22355556666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=6.1e-19  Score=185.14  Aligned_cols=236  Identities=27%  Similarity=0.316  Sum_probs=105.4

Q ss_pred             cCCCCCCCEEeCCCCcCCCC----cCccccCCCCCCEEEccCCcCCC------cccccccCCCCCCEEEccCccCCccCc
Q 041016          131 FANLTRLTYLDLKDNNLNGS----IPSQLFNLRYLEFLDLSANAIEG------KLSSRVAGLKNLKQLILDDNLIQGQIP  200 (757)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~p  200 (757)
                      +..+++|++|+++++.++..    ++..+...+.|++++++++.+.+      ..+..+..+++|+.|++++|.+.+..+
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            33344444444444444321    23333344444444444444431      112233444455555555555443333


Q ss_pred             hhccCCCC---CCEEEcccccccc----ccCccccCC-CCCCEEEccCCcCccc----CcccccCCCCCCEEEccCCCCC
Q 041016          201 AEIGNLTN---LHKLSLRQNKFSG----GIPLSLLQL-RKLETLDLQRNSLSGE----IPEDIGTLANITILALSNNALT  268 (757)
Q Consensus       201 ~~~~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  268 (757)
                      ..+..+.+   |++|++++|++.+    .+...+..+ ++|+.|++++|.+++.    ++..+..+++|++|++++|.++
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            33333332   5555555555442    112223333 4555555555555421    2223344445555555555554


Q ss_pred             Cc----cchhhhcCCCCCEEEccCCcccccc----chhhhccCCCcEEEccCCCCcCCCccccc-----CCcccceeecC
Q 041016          269 GA----IPQSIRNMTKLVTLRLDSNVLSGEI----STWLFDLQGMKSLYLGGNKLKWNDNVSIV-----PKCMLTELSLR  335 (757)
Q Consensus       269 ~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~L~  335 (757)
                      +.    ++..+..+++|++|++++|.+++..    ...+..+++|++|++++|.++......+.     ....|++|+++
T Consensus       179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~  258 (319)
T cd00116         179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS  258 (319)
T ss_pred             hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence            31    2223333445555555555554221    22233445555555555555421111111     12345555555


Q ss_pred             CccCcc----CcchhccCCCCCCEEEccCCcccCc
Q 041016          336 SCSVRG----SIPLWLSTQTELTFLDLSENELEGT  366 (757)
Q Consensus       336 ~~~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~  366 (757)
                      +|.++.    .+...+..+++|+++++++|.+...
T Consensus       259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            555431    2334455556777777777777644

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=4.3e-19  Score=186.34  Aligned_cols=281  Identities=25%  Similarity=0.285  Sum_probs=169.8

Q ss_pred             EEeCCCCcCC-CCcCccccCCCCCCEEEccCCcCCCc----ccccccCCCCCCEEEccCccCCc------cCchhccCCC
Q 041016          139 YLDLKDNNLN-GSIPSQLFNLRYLEFLDLSANAIEGK----LSSRVAGLKNLKQLILDDNLIQG------QIPAEIGNLT  207 (757)
Q Consensus       139 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~p~~~~~l~  207 (757)
                      .|+|..+.++ ...+..+..++.|++|+++++.++..    ++..+...+++++++++++.+.+      .++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4666777776 34455666778899999999988543    34455677778888888887752      2334566777


Q ss_pred             CCCEEEccccccccccCccccCCCC---CCEEEccCCcCcc----cCcccccCC-CCCCEEEccCCCCCCc----cchhh
Q 041016          208 NLHKLSLRQNKFSGGIPLSLLQLRK---LETLDLQRNSLSG----EIPEDIGTL-ANITILALSNNALTGA----IPQSI  275 (757)
Q Consensus       208 ~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~~~~l  275 (757)
                      +|++|++++|.+.+..+..+..+.+   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++..+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            8888888888876555555544444   8888888777763    222344555 6777777777777632    23345


Q ss_pred             hcCCCCCEEEccCCccccc----cchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCC
Q 041016          276 RNMTKLVTLRLDSNVLSGE----ISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT  351 (757)
Q Consensus       276 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  351 (757)
                      ..+++|++|++++|.+++.    ++..+..+++|++|++++|.++....                    ..+...+..++
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--------------------~~l~~~~~~~~  221 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA--------------------SALAETLASLK  221 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH--------------------HHHHHHhcccC
Confidence            5566777777777776632    22233444566666666665541111                    12334456677


Q ss_pred             CCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccc----cCCcccCCCCCccEE
Q 041016          352 ELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG----ELPETIGQSTSVMVL  427 (757)
Q Consensus       352 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L  427 (757)
                      +|++|++++|.+++.....+...               ++   ...+.|+.|++++|.++.    .+...+..+++|+++
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~---------------~~---~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l  283 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASA---------------LL---SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL  283 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHH---------------Hh---ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence            88888888887765322211100               00   013466667776666651    222344455777777


Q ss_pred             EccCCccccc----ChHhhhcc-CCCCEEEccCCc
Q 041016          428 MLSSNNFSGH----VPKSISNI-YRLLVLDLSNNS  457 (757)
Q Consensus       428 ~L~~n~l~~~----~~~~l~~l-~~L~~L~ls~n~  457 (757)
                      ++++|.++..    ....+... +.|+.+++.+|+
T Consensus       284 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         284 DLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             ECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            7777777644    33333334 577777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=7.3e-19  Score=152.49  Aligned_cols=161  Identities=30%  Similarity=0.538  Sum_probs=99.6

Q ss_pred             CCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEE
Q 041016          134 LTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS  213 (757)
Q Consensus       134 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  213 (757)
                      +.+.+.|.||+|.++ .+|+.+..+.+|++|++++|+++ .+|..++.+++|++|+++-|++. ..|..|+.++.|+.||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            344445555555555 44445555555555555555554 34555555555555555555555 5666666666666666


Q ss_pred             ccccccc-cccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccc
Q 041016          214 LRQNKFS-GGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS  292 (757)
Q Consensus       214 L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  292 (757)
                      |.+|.+. ..+|..|..+..|+.|+++.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|++|.+.+|+++
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            6666653 245666666667777777777765 56667777777777777777666 56777777777777777777776


Q ss_pred             cccchhhh
Q 041016          293 GEISTWLF  300 (757)
Q Consensus       293 ~~~~~~l~  300 (757)
                       .+|..++
T Consensus       187 -vlppel~  193 (264)
T KOG0617|consen  187 -VLPPELA  193 (264)
T ss_pred             -ecChhhh
Confidence             3444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=8.9e-19  Score=151.98  Aligned_cols=167  Identities=28%  Similarity=0.491  Sum_probs=145.7

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCC
Q 041016          105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN  184 (757)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  184 (757)
                      .++.+.+++.|.||+|+++ .+| ..++.+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. +.|..|+.++.
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vp-pnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~  103 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVP-PNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA  103 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecC-CcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence            4566778888999999997 667 67899999999999999998 88999999999999999999887 78889999999


Q ss_pred             CCEEEccCccCC-ccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcc
Q 041016          185 LKQLILDDNLIQ-GQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALS  263 (757)
Q Consensus       185 L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  263 (757)
                      |++|||.+|++. ..+|..|..++.|+.|.|+.|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|++|.+.
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence            999999999876 357888888999999999999998 78888999999999999999876 678999999999999999


Q ss_pred             CCCCCCccchhhhcC
Q 041016          264 NNALTGAIPQSIRNM  278 (757)
Q Consensus       264 ~n~l~~~~~~~l~~l  278 (757)
                      +|+++ .+|+.++++
T Consensus       182 gnrl~-vlppel~~l  195 (264)
T KOG0617|consen  182 GNRLT-VLPPELANL  195 (264)
T ss_pred             cceee-ecChhhhhh
Confidence            99998 677777654

>PLN03150 hypothetical protein; Provisional

Probab=99.53  E-value=5.5e-14  Score=158.29  Aligned_cols=154  Identities=27%  Similarity=0.459  Sum_probs=92.5

Q ss_pred             CCCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCc----ccceeeeCCCCCc--ccEEEEEcCCCCCCCC
Q 041016           23 LCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCC----RWEMVRCRSRGPS--QEVTGLDLNNLFPLDS   96 (757)
Q Consensus        23 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~~~~--~~v~~l~L~~~~~~~~   96 (757)
                      ..+.++|.+||+++|+.+.   . +      .  ..+|.+ ..||    .|.||+|......  .+|+.|+|        
T Consensus       367 ~~t~~~~~~aL~~~k~~~~---~-~------~--~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L--------  425 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLG---L-P------L--RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGL--------  425 (623)
T ss_pred             cccCchHHHHHHHHHHhcC---C-c------c--cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEEC--------
Confidence            3456789999999999875   2 2      1  137964 2332    7999999632111  13444544        


Q ss_pred             cceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccc
Q 041016           97 IVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLS  176 (757)
Q Consensus        97 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~  176 (757)
                                           ++|.+.|.+| ..+.++++|++|+|++|.++|.+|..++.+++|++|+|++|++.+.+|
T Consensus       426 ---------------------~~n~L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP  483 (623)
T PLN03150        426 ---------------------DNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP  483 (623)
T ss_pred             ---------------------CCCCccccCC-HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc
Confidence                                 4455555555 455555566666666666655556556666666666666666665566


Q ss_pred             ccccCCCCCCEEEccCccCCccCchhccCC-CCCCEEEcccccc
Q 041016          177 SRVAGLKNLKQLILDDNLIQGQIPAEIGNL-TNLHKLSLRQNKF  219 (757)
Q Consensus       177 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l  219 (757)
                      ..++++++|++|+|++|.+++.+|..++.. .++..+++.+|..
T Consensus       484 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        484 ESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             hHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            666666666666666666666666665543 3455666666654

>PLN03150 hypothetical protein; Provisional

Probab=99.37  E-value=9e-13  Score=148.53  Aligned_cols=118  Identities=38%  Similarity=0.656  Sum_probs=105.3

Q ss_pred             cCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCC
Q 041016          631 YSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN  710 (757)
Q Consensus       631 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  710 (757)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|++++.+|+.+..+++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceecCCCCCC--CCCCCCCccccCCCCCCCCCCCCCCCC
Q 041016          711 NKLSGRIPESPQ--MDRQIDPVIYANNSGLCGMQIQVVCPE  749 (757)
Q Consensus       711 N~l~g~iP~~~~--~~~~~~~~~~~gn~~lc~~~l~~~c~~  749 (757)
                      |+++|.+|..-.  +....... |.||+++||.+-.+.|..
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C~~  539 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRACGP  539 (623)
T ss_pred             CcccccCChHHhhccccCceEE-ecCCccccCCCCCCCCcc
Confidence            999999997521  22233445 899999999875567853

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=1.2e-13  Score=142.22  Aligned_cols=194  Identities=30%  Similarity=0.475  Sum_probs=130.2

Q ss_pred             CCCcccEEECcCCccccCCCchhhh--cccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEE
Q 041016          467 SDSLVGHVDISSNRFSGEVPSSFGV--TILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVL  544 (757)
Q Consensus       467 ~~~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L  544 (757)
                      .+..-...|++.|++.. +|..+..  +++.+.++.|.+. .+|..+.++..|+++||+.|+++ ..|..++.++ |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            34444567788888763 4444333  3677777777765 56677777788888888888777 5666666555 7777


Q ss_pred             EccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccc
Q 041016          545 NLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLS  624 (757)
Q Consensus       545 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  624 (757)
                      -+++|+++ .+|+.++....|..||.+.|.+. .+|..++.+.++                                   
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-----------------------------------  191 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-----------------------------------  191 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence            88887776 56767777777777888877775 555555555544                                   


Q ss_pred             cccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCc---cCCC
Q 041016          625 SKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTF---AKLQ  701 (757)
Q Consensus       625 ~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~  701 (757)
                             +.|.+..|++. ..|+++..| .|..||+|+|+++ .+|-.|.+|+.|++|-|.+|.+.. .|..+   +...
T Consensus       192 -------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVH  260 (722)
T KOG0532|consen  192 -------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVH  260 (722)
T ss_pred             -------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhcccee
Confidence                   55666677776 556666644 4777888888877 677777888888888888887773 33322   2344


Q ss_pred             CCCEEeCCCCc
Q 041016          702 QLTSLYLSNNK  712 (757)
Q Consensus       702 ~L~~L~ls~N~  712 (757)
                      --++|+..-|+
T Consensus       261 IFKyL~~qA~q  271 (722)
T KOG0532|consen  261 IFKYLSTQACQ  271 (722)
T ss_pred             eeeeecchhcc
Confidence            45677777774

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=6.1e-13  Score=137.11  Aligned_cols=181  Identities=31%  Similarity=0.510  Sum_probs=143.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016          108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ  187 (757)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  187 (757)
                      .+..-...||+.|++. .+| ..+..+..|+.+.|..|.+. .+|.++.++..|++|||+.|+++ ..|..++.|+ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp-~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELP-EEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCc-hHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            4555567788888887 777 66777888888888888887 88888888888888888888887 5566666664 888


Q ss_pred             EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016          188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL  267 (757)
Q Consensus       188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  267 (757)
                      |.+++|+++ .+|+.++.+..|.+||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+.. -.|..||++.|++
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCce
Confidence            888888887 67888888888888888888887 67777888888888888888877 55666663 3577888888888


Q ss_pred             CCccchhhhcCCCCCEEEccCCccccccchhh
Q 041016          268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWL  299 (757)
Q Consensus       268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l  299 (757)
                      . .+|-.|.+|++|++|.|.+|.++ ..|..+
T Consensus       224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             e-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            8 77888888888888888888887 344444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.16  E-value=5.3e-11  Score=128.55  Aligned_cols=197  Identities=37%  Similarity=0.512  Sum_probs=92.0

Q ss_pred             EEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCC-CCCEEeCcCCccc
Q 041016          450 VLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLS-LLQHLDLHDNNLT  528 (757)
Q Consensus       450 ~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~  528 (757)
                      .++...|.+..........+.+..+++.+|.++...+..                       ...+ +|+.|++++|.+.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-----------------------~~~~~nL~~L~l~~N~i~  153 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-----------------------GLLKSNLKELDLSDNKIE  153 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCcccc-----------------------ccchhhcccccccccchh
Confidence            466666665444444444455666666666655444332                       2232 4555555555554


Q ss_pred             CcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccc
Q 041016          529 GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVE  608 (757)
Q Consensus       529 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~  608 (757)
                       .+|..+..+++|+.|++++|++. .++......+.|+.|++++|.+. .+|.....                       
T Consensus       154 -~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-----------------------  207 (394)
T COG4886         154 -SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-----------------------  207 (394)
T ss_pred             -hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-----------------------
Confidence             33334444555555555555554 23332334455555555555554 22221100                       


Q ss_pred             cceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCc
Q 041016          609 IQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNS  688 (757)
Q Consensus       609 ~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  688 (757)
                                         +..++++++++|.+. .++..+..+..+..|.+.+|++.. .+..++.+++++.|++++|.
T Consensus       208 -------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         208 -------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             -------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccc
Confidence                               112344445555322 333344455555555555555542 23444555555555555555


Q ss_pred             CccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016          689 LSGKIPQTFAKLQQLTSLYLSNNKLSGRIP  718 (757)
Q Consensus       689 l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  718 (757)
                      ++...+  +..+.+++.|++++|.++..+|
T Consensus       267 i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         267 ISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccccc--ccccCccCEEeccCccccccch
Confidence            553322  4455555555555555544433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.15  E-value=9.7e-12  Score=118.25  Aligned_cols=61  Identities=31%  Similarity=0.380  Sum_probs=44.1

Q ss_pred             CCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCccc
Q 041016          513 NLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL  576 (757)
Q Consensus       513 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  576 (757)
                      ..+.|+++|+++|.|+ .+.+.+.-.|.++.|++|+|.+...  ..++.+++|+.||+|+|.++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls  342 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA  342 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence            3456778888888887 5666667778888888888887632  23777777888888777765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=9.9e-11  Score=126.46  Aligned_cols=180  Identities=37%  Similarity=0.527  Sum_probs=84.8

Q ss_pred             CCCCCEEEccCCcCCCcccccccCCC-CCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEE
Q 041016          158 LRYLEFLDLSANAIEGKLSSRVAGLK-NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETL  236 (757)
Q Consensus       158 l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  236 (757)
                      ++.++.|++.+|.+.. ++....... +|+.|++++|.+. .+|..++.+++|+.|++++|++. .+|...+..+.|+.|
T Consensus       115 ~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            3444444444444442 222223332 4445555555444 33344555555555555555554 333333344555555


Q ss_pred             EccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          237 DLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       237 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      ++++|+++ .+|........|+++.+++|.+. ..+..+.++..+..+.+.+|++.. .+..+..++.++.|++++|.++
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~  268 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS  268 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence            55555554 33333333444555555555322 233444555555555555555432 1334444555555555555554


Q ss_pred             CCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccc
Q 041016          317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ  369 (757)
Q Consensus       317 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  369 (757)
                                               .++. ++...+++.|++++|.+....+.
T Consensus       269 -------------------------~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         269 -------------------------SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             -------------------------cccc-ccccCccCEEeccCccccccchh
Confidence                                     2222 55555666666666666554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=6.2e-12  Score=122.69  Aligned_cols=91  Identities=30%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             cccCCCCCCEEeCCCCCCCCC----CCccccCCCCCCCEEeCCCCc---CCCCcCcc-------ccCCCCCCEEEccCCc
Q 041016          105 PIFRIRSLMTLDLSYNSMQGE----VPGTGFANLTRLTYLDLKDNN---LNGSIPSQ-------LFNLRYLEFLDLSANA  170 (757)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~-------l~~l~~L~~L~Ls~n~  170 (757)
                      .+..+.+++.++||+|.|...    +. ..+.+.++|+..++++-.   ....+|++       +..+++|++||||.|.
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~-~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIA-KVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHH-HHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            344566777777777776422    22 445666777777777642   11233332       3345566666666666


Q ss_pred             CCCccccc----ccCCCCCCEEEccCccCC
Q 041016          171 IEGKLSSR----VAGLKNLKQLILDDNLIQ  196 (757)
Q Consensus       171 l~~~~~~~----~~~l~~L~~L~L~~n~l~  196 (757)
                      +....+..    +.++..|++|.|.+|.+.
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            55333332    244556666666666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=3e-10  Score=104.50  Aligned_cols=102  Identities=35%  Similarity=0.362  Sum_probs=28.2

Q ss_pred             CCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhc-cCCCCCCEEEcccccccccc-CccccCCCCCCE
Q 041016          158 LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGI-PLSLLQLRKLET  235 (757)
Q Consensus       158 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~  235 (757)
                      +.+|+.|+|++|.++..  +.+..+++|+.|++++|+++.. .+.+ ..+++|++|++++|++...- -..+..+++|++
T Consensus        41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred             hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence            34444444444444422  1234444444444444444422 2222 23445555555555543211 123444555555


Q ss_pred             EEccCCcCcccC---cccccCCCCCCEEEc
Q 041016          236 LDLQRNSLSGEI---PEDIGTLANITILAL  262 (757)
Q Consensus       236 L~l~~n~l~~~~---~~~l~~l~~L~~L~L  262 (757)
                      |++.+|.++...   ...+..+++|+.||-
T Consensus       118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             eeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            555555554210   012345566666553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=7.1e-11  Score=115.41  Aligned_cols=175  Identities=20%  Similarity=0.286  Sum_probs=92.2

Q ss_pred             ccCCCCCCEEeCcCcccccc----CCcccCCCCCccEEEccCC---cccccChHh-------hhccCCCCEEEccCCccc
Q 041016          394 LFESRNLSVLVLSRNNFSGE----LPETIGQSTSVMVLMLSSN---NFSGHVPKS-------ISNIYRLLVLDLSNNSFS  459 (757)
Q Consensus       394 l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n---~l~~~~~~~-------l~~l~~L~~L~ls~n~l~  459 (757)
                      +.....++.+++++|.+...    +...+...+.|+..++++-   +....+|..       +..+++|++++||.|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            34456778888888877543    3334555667777777653   222233332       344567777777777665


Q ss_pred             ccCC-----CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCc----
Q 041016          460 GEFP-----AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE----  530 (757)
Q Consensus       460 ~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----  530 (757)
                      ...+     -+.++..|++|.+.+|.+.-.-...++..+..+.  .++       -...-+.|+.+....|++...    
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~k-------k~~~~~~Lrv~i~~rNrlen~ga~~  176 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNK-------KAASKPKLRVFICGRNRLENGGATA  176 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHh-------ccCCCcceEEEEeeccccccccHHH
Confidence            3322     2345666666666666554222222111111111  111       112234566666666665422    


Q ss_pred             chhhccCCCCCCEEEccCCcCcc----ccCcccCCCCCCCEEECcCCcccc
Q 041016          531 FPAFLSQLSSLQVLNLRNTALEG----SITDGLSNLTSLQILDLSNNNLLG  577 (757)
Q Consensus       531 ~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~ls~n~l~~  577 (757)
                      +...|...+.|+.+.++.|.|..    .+...|..+++|+.|||.+|.++.
T Consensus       177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence            23345556666666666666641    122455666677777777666653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.98  E-value=4.4e-10  Score=103.40  Aligned_cols=105  Identities=30%  Similarity=0.383  Sum_probs=22.4

Q ss_pred             CCCEEeCCCCCCCCCCCccccC-CCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          111 SLMTLDLSYNSMQGEVPGTGFA-NLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       111 ~L~~L~Ls~n~l~~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      .+++|+|++|.|+ .|.  .++ .+.+|+.|+|++|.++. ++ .+..+++|++|++++|+++...+.....+++|++|+
T Consensus        20 ~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            3444555555443 221  122 34445555555555442 21 244445555555555554433221112344455555


Q ss_pred             ccCccCCcc-CchhccCCCCCCEEEccccccc
Q 041016          190 LDDNLIQGQ-IPAEIGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       190 L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~  220 (757)
                      +++|++... .-..+..+++|++|++.+|.+.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            555544321 1123344445555555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.4e-10  Score=116.36  Aligned_cols=62  Identities=21%  Similarity=0.200  Sum_probs=32.4

Q ss_pred             CCCCccEEEccCCcccccCh-HhhhccCCCCEEEccCCcccccCC---CCCCCCcccEEECcCCcc
Q 041016          420 QSTSVMVLMLSSNNFSGHVP-KSISNIYRLLVLDLSNNSFSGEFP---AFGSDSLVGHVDISSNRF  481 (757)
Q Consensus       420 ~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~---~~~~~~~L~~L~l~~n~l  481 (757)
                      ++.+|+.+.|.+........ .....|++++.||++.|-+..-.+   ....+++|+.|+++.|++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl  184 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL  184 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence            35566677776665542111 245566666666666666553222   233444555555555444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1e-10  Score=117.37  Aligned_cols=207  Identities=21%  Similarity=0.215  Sum_probs=97.4

Q ss_pred             CCCCCCEEeCCCCcCCCCcC--ccccCCCCCCEEEccCCcCCCccc--ccccCCCCCCEEEccCccCCccCchh-ccCCC
Q 041016          133 NLTRLTYLDLKDNNLNGSIP--SQLFNLRYLEFLDLSANAIEGKLS--SRVAGLKNLKQLILDDNLIQGQIPAE-IGNLT  207 (757)
Q Consensus       133 ~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~  207 (757)
                      ++++|+.+.|.++.+. ..+  .....|++++.||||+|-+....+  .....+++|+.|+++.|++....... -..++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4555555555555544 222  234455566666666555443211  22345556666666666554221111 12345


Q ss_pred             CCCEEEccccccccc-cCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCcc-chhhhcCCCCCEEE
Q 041016          208 NLHKLSLRQNKFSGG-IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAI-PQSIRNMTKLVTLR  285 (757)
Q Consensus       208 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~  285 (757)
                      +|+.|.|+.|.++.. +-.....+|+|+.|++..|............+..|+.|+|++|.+-... -...+.++.|+.|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            566666666655421 1112234556666666665422222223344555666666666554211 12344555566666


Q ss_pred             ccCCcccccc-chh-----hhccCCCcEEEccCCCCc-CCCcccccCCcccceeecCCccCc
Q 041016          286 LDSNVLSGEI-STW-----LFDLQGMKSLYLGGNKLK-WNDNVSIVPKCMLTELSLRSCSVR  340 (757)
Q Consensus       286 L~~n~l~~~~-~~~-----l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~~~~~  340 (757)
                      ++.+.+...- |+.     ...+++|++|++..|++. |-....+....+|+.|.+..+.+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            6555554221 111     234556666666666653 222333344444555555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.90  E-value=1.6e-09  Score=124.89  Aligned_cols=106  Identities=35%  Similarity=0.412  Sum_probs=59.3

Q ss_pred             CCCCEEeCCCCc--CCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEE
Q 041016          135 TRLTYLDLKDNN--LNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKL  212 (757)
Q Consensus       135 ~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  212 (757)
                      ++|+.|-+..|.  +....++.|..++.|++|||++|.--+.+|..++.+-+||+|+++++.+. .+|..+++++.|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            356666665554  33222223445666666666665555556666666666666666666655 556666666666666


Q ss_pred             EccccccccccCccccCCCCCCEEEccCC
Q 041016          213 SLRQNKFSGGIPLSLLQLRKLETLDLQRN  241 (757)
Q Consensus       213 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  241 (757)
                      ++..+.....+|.....+++|++|.+...
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeecc
Confidence            66655544344444455666666665443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.89  E-value=1.7e-09  Score=124.63  Aligned_cols=153  Identities=24%  Similarity=0.314  Sum_probs=110.2

Q ss_pred             cCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCc--CCCcccccccCCCCCCEEEccCccCCccCchhccCCCC
Q 041016          131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA--IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTN  208 (757)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  208 (757)
                      .......|...+-+|.+. .++... .++.|++|-+..|.  +.......|..++.|++|||++|.--+.+|..++++-+
T Consensus       519 ~~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  519 VKSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             ccchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            344467788888888776 444433 34578888888886  55555556888999999999988766788999999999


Q ss_pred             CCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC--CCccchhhhcCCCCCEEEc
Q 041016          209 LHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL--TGAIPQSIRNMTKLVTLRL  286 (757)
Q Consensus       209 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~l~~l~~L~~L~L  286 (757)
                      |++|+++++.+. .+|..+.++..|.+|++..+.-...+|.....+.+|++|.+.....  +...-..+.++.+|+.+..
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            999999999888 7888899999999999888775555566666788888888766542  2222233344444444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=7.4e-10  Score=83.65  Aligned_cols=61  Identities=49%  Similarity=0.651  Sum_probs=44.4

Q ss_pred             CCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcc
Q 041016          653 KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL  713 (757)
Q Consensus       653 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  713 (757)
                      ++|++|++++|+++...++.|.++++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777766666777777777777777777777777777777777777777764

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.89  E-value=1.9e-10  Score=124.30  Aligned_cols=246  Identities=26%  Similarity=0.294  Sum_probs=128.2

Q ss_pred             CCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEE
Q 041016          396 ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVD  475 (757)
Q Consensus       396 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~  475 (757)
                      .+..++.+.+..|.+.. +...+..+++|+.+++.+|.+.... ..+..+++|++|++++|.++ .+..+..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccc-cccchhhccchhhhe
Confidence            34555666666666653 2223555666666666666665322 22445556666666666554 233333333344444


Q ss_pred             CcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcch-hhccCCCCCCEEEccCCcCccc
Q 041016          476 ISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNLRNTALEGS  554 (757)
Q Consensus       476 l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~  554 (757)
                      +++|.++..                        ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.. 
T Consensus       147 l~~N~i~~~------------------------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-  200 (414)
T KOG0531|consen  147 LSGNLISDI------------------------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-  200 (414)
T ss_pred             eccCcchhc------------------------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-
Confidence            444444322                        223335566666666666653333 1 3445556666666665542 


Q ss_pred             cCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccccccc--ccC
Q 041016          555 ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA--IYS  632 (757)
Q Consensus       555 ~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~l~  632 (757)
                       ...+..+..+..+++..|.++..-+...                                            ..  +++
T Consensus       201 -i~~~~~~~~l~~~~l~~n~i~~~~~l~~--------------------------------------------~~~~~L~  235 (414)
T KOG0531|consen  201 -IEGLDLLKKLVLLSLLDNKISKLEGLNE--------------------------------------------LVMLHLR  235 (414)
T ss_pred             -ccchHHHHHHHHhhcccccceeccCccc--------------------------------------------chhHHHH
Confidence             2223333344444555555542211100                                            01  145


Q ss_pred             eEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccC---CCCC-ccCCCCCCEEeC
Q 041016          633 LMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGK---IPQT-FAKLQQLTSLYL  708 (757)
Q Consensus       633 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~l  708 (757)
                      .+++++|.+. .++..+..+..+..|+++.|++...  ..+.....+..+..+.|.+...   .... ....+.++..++
T Consensus       236 ~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (414)
T KOG0531|consen  236 ELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTL  312 (414)
T ss_pred             HHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccccc
Confidence            6677777766 3335566667777777777777654  3455556666666666665522   1111 445567777777


Q ss_pred             CCCcceecCC
Q 041016          709 SNNKLSGRIP  718 (757)
Q Consensus       709 s~N~l~g~iP  718 (757)
                      .+|+.....+
T Consensus       313 ~~~~~~~~~~  322 (414)
T KOG0531|consen  313 ELNPIRKISS  322 (414)
T ss_pred             ccCccccccc
Confidence            7777766544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=5.4e-10  Score=106.57  Aligned_cols=130  Identities=25%  Similarity=0.261  Sum_probs=77.0

Q ss_pred             CCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccC
Q 041016          421 STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSE  500 (757)
Q Consensus       421 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~  500 (757)
                      .+.|+++|+++|.|+ .+.++..-.+.++.|++++|.+. .+..+..+++|+.||+++|.++...               
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls~~~---------------  345 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLAECV---------------  345 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhHhhh---------------
Confidence            345677777777766 45556666677777777777665 3334556666666666666554221               


Q ss_pred             CccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcccc-CcccCCCCCCCEEECcCCcccc
Q 041016          501 NKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI-TDGLSNLTSLQILDLSNNNLLG  577 (757)
Q Consensus       501 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~  577 (757)
                              .+-.++-+.+.|.+++|.+.  .-..+..+-+|..||+++|+|...- ...++++|.|+++.+.+|++.+
T Consensus       346 --------Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  346 --------GWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             --------hhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence                    11223445556666666554  1233455566666666666665322 2456777777777777777764

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=7.3e-10  Score=119.76  Aligned_cols=200  Identities=29%  Similarity=0.305  Sum_probs=95.7

Q ss_pred             CCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016          132 ANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK  211 (757)
Q Consensus       132 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  211 (757)
                      ..+..++.+++..|.+. .+-..+..+++|+.|++..|.+..+.. .+..+++|++|++++|.|+..  ..+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhh
Confidence            34556666666666665 233345556666666666666553321 144455555555555555432  12334444555


Q ss_pred             EEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccc-hhhhcCCCCCEEEccCCc
Q 041016          212 LSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP-QSIRNMTKLVTLRLDSNV  290 (757)
Q Consensus       212 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~  290 (757)
                      |++++|.+.                        ..  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.
T Consensus       145 L~l~~N~i~------------------------~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  145 LNLSGNLIS------------------------DI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS  197 (414)
T ss_pred             heeccCcch------------------------hc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence            555555544                        22  223334444444444444443222 1 3444455555555555


Q ss_pred             cccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccC
Q 041016          291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEG  365 (757)
Q Consensus       291 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~  365 (757)
                      +..  ...+..+..+..+++..|.++............|+.++++++++.. .+..+..+..+..+++..|++..
T Consensus       198 i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~  269 (414)
T KOG0531|consen  198 IRE--IEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISN  269 (414)
T ss_pred             hhc--ccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccc
Confidence            431  1222233333334555555543332222222235555666655542 22445566777777777777653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=3.2e-09  Score=80.14  Aligned_cols=61  Identities=43%  Similarity=0.571  Sum_probs=56.8

Q ss_pred             cccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcC
Q 041016          629 AIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL  689 (757)
Q Consensus       629 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  689 (757)
                      ++|+.|++++|+++...+..|.++++|++|++++|+++...|++|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3578999999999977778999999999999999999999999999999999999999985

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.75  E-value=1.1e-08  Score=70.39  Aligned_cols=40  Identities=43%  Similarity=0.783  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCC--CCCcccceeeeC
Q 041016           27 EDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSS--SDCCRWEMVRCR   75 (757)
Q Consensus        27 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~   75 (757)
                      ++|++||++||+++.   .++      .+.+.+|+..  .+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~---~~~------~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLN---NDP------SGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT----SC-------CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcc---ccc------CcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999998   333      4678999976  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=1.8e-09  Score=114.79  Aligned_cols=181  Identities=25%  Similarity=0.277  Sum_probs=101.3

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCCccccCCC-CCCCEEeCCCCc--CCCCcCccccC------CCCCCEEEccCCcCCC
Q 041016          103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANL-TRLTYLDLKDNN--LNGSIPSQLFN------LRYLEFLDLSANAIEG  173 (757)
Q Consensus       103 ~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l-~~L~~L~Ls~n~--l~~~~p~~l~~------l~~L~~L~Ls~n~l~~  173 (757)
                      |-.++.|++|++|.|.++.+...   ..+..+ .+|++|-.++.-  +...+....+.      --.|.+.+.++|++. 
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-  177 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-  177 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence            44677888888888888877521   112111 234444333210  00011111111      124556666677665 


Q ss_pred             cccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccC
Q 041016          174 KLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT  253 (757)
Q Consensus       174 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  253 (757)
                      ....++.-++.|+.|+|++|+++..  +.+..|++|++|||++|.+....--....+. |+.|.+++|.++..  ..+.+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence            4455566667777777777777643  3666777777777777777632222233333 77777777776543  35667


Q ss_pred             CCCCCEEEccCCCCCCcc-chhhhcCCCCCEEEccCCccc
Q 041016          254 LANITILALSNNALTGAI-PQSIRNMTKLVTLRLDSNVLS  292 (757)
Q Consensus       254 l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~  292 (757)
                      +.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+-
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            777777777777665421 122344556666677766654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.4e-08  Score=95.63  Aligned_cols=174  Identities=24%  Similarity=0.185  Sum_probs=114.5

Q ss_pred             CCCEEeCcCcccccc-CCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC---CCCCCCcccEE
Q 041016          399 NLSVLVLSRNNFSGE-LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP---AFGSDSLVGHV  474 (757)
Q Consensus       399 ~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~---~~~~~~~L~~L  474 (757)
                      .|+.+||++..++.. ....+..|.+|+.|.+.++++.+.+...+.+-.+|+.++++.+.=-....   .+.+|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            466666666655422 11234456777777777777777777777777777777777664222222   35667777777


Q ss_pred             ECcCCccccCCCc----hhhhcccEEEccCCccc---cccchhccCCCCCCEEeCcCCc-ccCcchhhccCCCCCCEEEc
Q 041016          475 DISSNRFSGEVPS----SFGVTILMLSLSENKFS---GQLPQNLSNLSLLQHLDLHDNN-LTGEFPAFLSQLSSLQVLNL  546 (757)
Q Consensus       475 ~l~~n~l~~~~~~----~~~~~l~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L  546 (757)
                      +++.|.+......    .+...++.|+++++.-.   ..+..-...|++|.+|||++|. ++...-..|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            7777766544322    23344777887766421   1122234679999999999985 55555556778999999999


Q ss_pred             cCCcCccccCc---ccCCCCCCCEEECcCCc
Q 041016          547 RNTALEGSITD---GLSNLTSLQILDLSNNN  574 (757)
Q Consensus       547 s~n~l~~~~~~---~l~~l~~L~~L~ls~n~  574 (757)
                      +.|..  ++|+   .+...++|.+||+.++-
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            99985  3554   46778999999998763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1e-08  Score=98.12  Aligned_cols=175  Identities=19%  Similarity=0.150  Sum_probs=75.5

Q ss_pred             CCEEeCCCCcCCC-CcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCcc-CCcc-CchhccCCCCCCEEE
Q 041016          137 LTYLDLKDNNLNG-SIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQ-IPAEIGNLTNLHKLS  213 (757)
Q Consensus       137 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~  213 (757)
                      |++||||+..|+. .+-.-+..|++|+.|.|.++++...+...++.-.+|+.|+++.+. ++.. ..--+.+|+.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            4455555444431 111123344455555555555544444444555555555555443 2110 011244555555555


Q ss_pred             ccccccccccCcc-ccC-CCCCCEEEccCCc--Cc-ccCcccccCCCCCCEEEccCCC-CCCccchhhhcCCCCCEEEcc
Q 041016          214 LRQNKFSGGIPLS-LLQ-LRKLETLDLQRNS--LS-GEIPEDIGTLANITILALSNNA-LTGAIPQSIRNMTKLVTLRLD  287 (757)
Q Consensus       214 L~~n~l~~~~~~~-l~~-l~~L~~L~l~~n~--l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~  287 (757)
                      +++|.+....... +.. -.+|+.|+++++.  +. ..+..-...+++|.+|||++|. ++......|.+++.|++|.++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence            5555543221111 111 1345555555443  10 0111112345556666665542 333333445555566666665


Q ss_pred             CCccccccchh---hhccCCCcEEEccCC
Q 041016          288 SNVLSGEISTW---LFDLQGMKSLYLGGN  313 (757)
Q Consensus       288 ~n~l~~~~~~~---l~~l~~L~~L~L~~n  313 (757)
                      .|..  .+|..   +...+.|.+|++.++
T Consensus       347 RCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  347 RCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhcC--CChHHeeeeccCcceEEEEeccc
Confidence            5542  23332   334455555555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.28  E-value=2.3e-08  Score=106.63  Aligned_cols=178  Identities=29%  Similarity=0.365  Sum_probs=121.2

Q ss_pred             cccCCCCCCCEEeCCCCcCCCCcCccccCC-CCCCEEEccCCcCC---Ccccc---ccc---CCCCCCEEEccCccCCcc
Q 041016          129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNL-RYLEFLDLSANAIE---GKLSS---RVA---GLKNLKQLILDDNLIQGQ  198 (757)
Q Consensus       129 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~---~~~~~---~~~---~l~~L~~L~L~~n~l~~~  198 (757)
                      -.+..+++||+|.|.++.+..  ...+..+ ..|+.|.- +|.+.   ..+..   .++   ...+|.+.+.++|.+. .
T Consensus       103 i~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~  178 (1096)
T KOG1859|consen  103 ISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L  178 (1096)
T ss_pred             ceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence            456778889999999988763  1112111 12333322 22211   00000   011   1235778888899887 5


Q ss_pred             CchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCccc-ccCCCCCCEEEccCCCCCCccchhhhc
Q 041016          199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED-IGTLANITILALSNNALTGAIPQSIRN  277 (757)
Q Consensus       199 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~  277 (757)
                      +..++.-++.|+.|+|++|+++...  .+..+++|++||+++|.++ .+|.. ...+ .|+.|.+++|.++..  ..+.+
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHh
Confidence            6677888899999999999997543  7888999999999999987 34432 2233 499999999988743  46788


Q ss_pred             CCCCCEEEccCCcccccc-chhhhccCCCcEEEccCCCCc
Q 041016          278 MTKLVTLRLDSNVLSGEI-STWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       278 l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      +.+|+.||+++|-+.+.- -..++.+..|+.|+|.+|.+-
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            899999999999876532 233567788889999999875

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=4.4e-07  Score=85.93  Aligned_cols=88  Identities=25%  Similarity=0.326  Sum_probs=44.9

Q ss_pred             cCCCCCCEEeCCCCCCCCC----CCccccCCCCCCCEEeCCCCcCC---CCcCc-------cccCCCCCCEEEccCCcCC
Q 041016          107 FRIRSLMTLDLSYNSMQGE----VPGTGFANLTRLTYLDLKDNNLN---GSIPS-------QLFNLRYLEFLDLSANAIE  172 (757)
Q Consensus       107 ~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L~~L~Ls~n~l~---~~~p~-------~l~~l~~L~~L~Ls~n~l~  172 (757)
                      ..+..+..+|||+|.|...    +. ..+++-++|+..+++.-...   ..++.       ++-+|++|+..+||.|.+.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~-~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELC-NVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHH-HHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3466777778887777532    11 34555667777777654221   12222       2345555555555555554


Q ss_pred             Cccccc----ccCCCCCCEEEccCccC
Q 041016          173 GKLSSR----VAGLKNLKQLILDDNLI  195 (757)
Q Consensus       173 ~~~~~~----~~~l~~L~~L~L~~n~l  195 (757)
                      ...|..    +++-+.|.+|.+++|.+
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCC
Confidence            433322    23444455555554443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.06  E-value=1.4e-07  Score=79.90  Aligned_cols=90  Identities=27%  Similarity=0.391  Sum_probs=51.0

Q ss_pred             ccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCC
Q 041016          630 IYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLS  709 (757)
Q Consensus       630 ~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  709 (757)
                      ..+.+++++|.|+ .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+.. +|..+---+..-..++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhc
Confidence            3355666666666 56666666677777777777666 445555556666666666666653 33222222223333456


Q ss_pred             CCcceecCCCCCC
Q 041016          710 NNKLSGRIPESPQ  722 (757)
Q Consensus       710 ~N~l~g~iP~~~~  722 (757)
                      ++++.+.-|.++|
T Consensus       155 nepl~~~~~~klq  167 (177)
T KOG4579|consen  155 NEPLGDETKKKLQ  167 (177)
T ss_pred             CCcccccCccccc
Confidence            6666665555543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=1.6e-05  Score=82.52  Aligned_cols=66  Identities=14%  Similarity=0.248  Sum_probs=36.5

Q ss_pred             ccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcc
Q 041016          511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSS  582 (757)
Q Consensus       511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~  582 (757)
                      +..+.+++.|++++|.++ .+|.   -.++|++|.+++|.-...+|+.+  .++|+.|++++|.....+|..
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc
Confidence            344566677777777665 3441   12357777776655444555444  246777777776332344443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=2.3e-06  Score=82.31  Aligned_cols=80  Identities=18%  Similarity=0.190  Sum_probs=47.2

Q ss_pred             CCCCEEeCcCcccccc-CCcccCCCCCccEEEccCCcccccC-hHhhhccCCCCEEEccCCcccccCC-------CCCCC
Q 041016          398 RNLSVLVLSRNNFSGE-LPETIGQSTSVMVLMLSSNNFSGHV-PKSISNIYRLLVLDLSNNSFSGEFP-------AFGSD  468 (757)
Q Consensus       398 ~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~-------~~~~~  468 (757)
                      +++..+.+..|.+... ..+.+..++.+..|+|+.|++.... -+.+.++++|..|.++++++...+.       -++.+
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            4566666666655432 2234445666667777777765321 2456677778888888877764433       24556


Q ss_pred             CcccEEECc
Q 041016          469 SLVGHVDIS  477 (757)
Q Consensus       469 ~~L~~L~l~  477 (757)
                      ++++.|+=+
T Consensus       279 ~~v~vLNGs  287 (418)
T KOG2982|consen  279 TKVQVLNGS  287 (418)
T ss_pred             cceEEecCc
Confidence            666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.89  E-value=4.4e-07  Score=76.96  Aligned_cols=82  Identities=24%  Similarity=0.320  Sum_probs=34.9

Q ss_pred             CCEEeCCCCCCCCCCCc--cccCCCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 041016          112 LMTLDLSYNSMQGEVPG--TGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL  188 (757)
Q Consensus       112 L~~L~Ls~n~l~~~i~~--~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  188 (757)
                      +..+||++|.+. .+++  ..+.+...|+..+|++|.+. .+|..|. +.+.++.|+|++|.++ .+|..++.++.|+.|
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            445566666553 2331  11223344444555555555 3343332 2334444444444444 222224444444444


Q ss_pred             EccCccCC
Q 041016          189 ILDDNLIQ  196 (757)
Q Consensus       189 ~L~~n~l~  196 (757)
                      +++.|.+.
T Consensus       106 Nl~~N~l~  113 (177)
T KOG4579|consen  106 NLRFNPLN  113 (177)
T ss_pred             ccccCccc
Confidence            44444433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.88  E-value=1.2e-05  Score=76.41  Aligned_cols=90  Identities=23%  Similarity=0.340  Sum_probs=56.5

Q ss_pred             cCCCCCCCEEeCCCCcCCCCc----CccccCCCCCCEEEccCCcCC---Cccc-------ccccCCCCCCEEEccCccCC
Q 041016          131 FANLTRLTYLDLKDNNLNGSI----PSQLFNLRYLEFLDLSANAIE---GKLS-------SRVAGLKNLKQLILDDNLIQ  196 (757)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~---~~~~-------~~~~~l~~L~~L~L~~n~l~  196 (757)
                      +.-+..++.++||+|.|...-    ...+.+-.+|+..+++.-...   ..++       .++.+|++|+..+||+|.+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            445788888999999887433    334555677888777753221   1122       23456777777777777776


Q ss_pred             ccCchh----ccCCCCCCEEEccccccc
Q 041016          197 GQIPAE----IGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       197 ~~~p~~----~~~l~~L~~L~L~~n~l~  220 (757)
                      ...|..    +++-+.|++|.+++|.+.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCC
Confidence            555543    345566777777777653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.6e-05  Score=54.70  Aligned_cols=36  Identities=44%  Similarity=0.647  Sum_probs=19.2

Q ss_pred             CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCC
Q 041016          136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIE  172 (757)
Q Consensus       136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  172 (757)
                      +|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 44445555555555555555554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.80  E-value=5e-06  Score=80.04  Aligned_cols=106  Identities=29%  Similarity=0.385  Sum_probs=57.9

Q ss_pred             CCCEEEccCccCCccCc-hhc-cCCCCCCEEEcccccccc--ccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCE
Q 041016          184 NLKQLILDDNLIQGQIP-AEI-GNLTNLHKLSLRQNKFSG--GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITI  259 (757)
Q Consensus       184 ~L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  259 (757)
                      .++.|.+.++.+..... ..| ..++.++++||.+|.++.  .+...+.++|.|++|+++.|++...+...-....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            44455555655542211 112 235677788888887753  23334567777777777777776443222135566777


Q ss_pred             EEccCCCCCCc-cchhhhcCCCCCEEEccCC
Q 041016          260 LALSNNALTGA-IPQSIRNMTKLVTLRLDSN  289 (757)
Q Consensus       260 L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n  289 (757)
                      |-|.+..+.-. ....+..++.+++|.++.|
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            77766655422 1223344555555555555

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=2.8e-05  Score=53.46  Aligned_cols=36  Identities=47%  Similarity=0.710  Sum_probs=16.8

Q ss_pred             CCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCc
Q 041016          654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS  690 (757)
Q Consensus       654 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  690 (757)
                      +|++|++++|+|+. +|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            44555555555552 2333555555555555555554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.65  E-value=0.00013  Score=64.83  Aligned_cols=108  Identities=14%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             CccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCC
Q 041016          127 PGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNL  206 (757)
Q Consensus       127 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  206 (757)
                      +..+|.++++|+.+.+.. .+...-..+|..+++|+.+.+..+ +..+....|.++++++.+.+.+ .+.......|..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            334566666666666653 344333444555555665555553 4444444455555555555543 2222333345555


Q ss_pred             CCCCEEEccccccccccCccccCCCCCCEEEcc
Q 041016          207 TNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQ  239 (757)
Q Consensus       207 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  239 (757)
                      ++|+.+++..+ +.......|.++ +|+.+.+.
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            55555555443 322233334443 45554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.00031  Score=73.14  Aligned_cols=55  Identities=11%  Similarity=0.093  Sum_probs=23.1

Q ss_pred             ccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCC
Q 041016          444 NIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSEN  501 (757)
Q Consensus       444 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n  501 (757)
                      .+.+++.|++++|.++ .+|.  -..+|+.|.+++|.-....|..++..|+.|++++|
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence            3455555555555433 2221  12235555555433323333333333444444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.54  E-value=0.00018  Score=65.88  Aligned_cols=58  Identities=36%  Similarity=0.379  Sum_probs=25.6

Q ss_pred             CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccC
Q 041016          136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLI  195 (757)
Q Consensus       136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  195 (757)
                      +...+||++|.+.. + ..|..++.|.+|.|++|+|+.+.|.--..+++|+.|.|.+|.+
T Consensus        43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            44455555555441 1 1233444444555555544444333333334444444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.46  E-value=0.00036  Score=61.86  Aligned_cols=106  Identities=12%  Similarity=0.197  Sum_probs=44.3

Q ss_pred             ccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCC
Q 041016          153 SQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRK  232 (757)
Q Consensus       153 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  232 (757)
                      .+|.++++|+.+.+.. .+..+....|.++++|+.+.+.++ +.......|.++++|+.+.+.. .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3455666666666653 344455555666666666666554 4434444555555566666644 322233334445555


Q ss_pred             CCEEEccCCcCcccCcccccCCCCCCEEEcc
Q 041016          233 LETLDLQRNSLSGEIPEDIGTLANITILALS  263 (757)
Q Consensus       233 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  263 (757)
                      |+.+++..+ +.......|.+. +|+.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            555555443 332223334443 45555444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.44  E-value=3.8e-05  Score=86.87  Aligned_cols=138  Identities=25%  Similarity=0.334  Sum_probs=83.1

Q ss_pred             CCCCEEeCCCCcCC-CCcCcccc-CCCCCCEEEccCCcCCCc-ccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016          135 TRLTYLDLKDNNLN-GSIPSQLF-NLRYLEFLDLSANAIEGK-LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK  211 (757)
Q Consensus       135 ~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  211 (757)
                      .+|++||+++...- ...|..++ .+|+|+.|.+++-.+... ......++++|..||+|+++++..  .+++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            56777777765332 22333343 467777777777554322 223346777777888887777643  56777777777


Q ss_pred             EEcccccccc-ccCccccCCCCCCEEEccCCcCcccC--c----ccccCCCCCCEEEccCCCCCCccchh
Q 041016          212 LSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEI--P----EDIGTLANITILALSNNALTGAIPQS  274 (757)
Q Consensus       212 L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~  274 (757)
                      |.+.+=.+.. ..-..+.++++|++||+|........  .    +.-..+++|+.||.+++.+...+-+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence            7777665542 12234567788888888765533211  1    11234778888888887776544433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.40  E-value=0.00028  Score=64.62  Aligned_cols=84  Identities=25%  Similarity=0.264  Sum_probs=61.0

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcc-cccccCCCCCCEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL-SSRVAGLKNLKQL  188 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L  188 (757)
                      .....+||++|.+.. +  ..|..++.|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|++.... -.-+..+++|++|
T Consensus        42 d~~d~iDLtdNdl~~-l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK-L--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhh-c--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            456789999999863 3  44788999999999999999666655556788999999999987431 1224455566666


Q ss_pred             EccCccCC
Q 041016          189 ILDDNLIQ  196 (757)
Q Consensus       189 ~L~~n~l~  196 (757)
                      .+-+|.++
T Consensus       119 tll~Npv~  126 (233)
T KOG1644|consen  119 TLLGNPVE  126 (233)
T ss_pred             eecCCchh
Confidence            66555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.35  E-value=6.1e-05  Score=85.25  Aligned_cols=148  Identities=16%  Similarity=0.221  Sum_probs=89.6

Q ss_pred             CCCCEEEccCCcCCC-ccccc-ccCCCCCCEEEccCccCCcc-CchhccCCCCCCEEEccccccccccCccccCCCCCCE
Q 041016          159 RYLEFLDLSANAIEG-KLSSR-VAGLKNLKQLILDDNLIQGQ-IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLET  235 (757)
Q Consensus       159 ~~L~~L~Ls~n~l~~-~~~~~-~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  235 (757)
                      .+|++||+++...-. .-+.. -..+|.|+.|.+.+-.+... .-....++++|..||+|++.++..  .+++++++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            567888887754321 11122 24578888888877665422 123356778888888888887633  56777888888


Q ss_pred             EEccCCcCcc-cCcccccCCCCCCEEEccCCCCCCcc--c----hhhhcCCCCCEEEccCCccccccchhh-hccCCCcE
Q 041016          236 LDLQRNSLSG-EIPEDIGTLANITILALSNNALTGAI--P----QSIRNMTKLVTLRLDSNVLSGEISTWL-FDLQGMKS  307 (757)
Q Consensus       236 L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~  307 (757)
                      |.+.+-.+.. ..-..+.++++|++||+|........  .    +.-..++.|+.||.++..+.+.+-+.+ ...++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            8777665543 22235677888888888876544221  1    122346788888888777765443332 23444444


Q ss_pred             E
Q 041016          308 L  308 (757)
Q Consensus       308 L  308 (757)
                      +
T Consensus       280 i  280 (699)
T KOG3665|consen  280 I  280 (699)
T ss_pred             h
Confidence            3

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.05  E-value=0.00032  Score=67.15  Aligned_cols=63  Identities=27%  Similarity=0.339  Sum_probs=36.4

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCC--cCCCCcCccccCCCCCCEEEccCCcCC
Q 041016          107 FRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN--NLNGSIPSQLFNLRYLEFLDLSANAIE  172 (757)
Q Consensus       107 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~  172 (757)
                      -.+..|+.|++.+..++..   ..|-.+++|++|.++.|  .+++.++.-...+++|++|++++|++.
T Consensus        40 d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3444555555555555421   33556677777777777  455444444455566666666666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.77  E-value=0.00073  Score=64.78  Aligned_cols=64  Identities=28%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             cCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCC--cCCCcccccccCCCCCCEEEccCccCC
Q 041016          131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN--AIEGKLSSRVAGLKNLKQLILDDNLIQ  196 (757)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~  196 (757)
                      ...+..|+.|++.+..++..  ..+-.|++|++|.+|.|  ++.+.++.....+++|+++++++|++.
T Consensus        39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34445555555555555421  23344555555555555  333333333333344555555544443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.40  E-value=0.00033  Score=71.19  Aligned_cols=15  Identities=27%  Similarity=0.317  Sum_probs=9.5

Q ss_pred             cCCCCCCEEEccCCc
Q 041016          348 STQTELTFLDLSENE  362 (757)
Q Consensus       348 ~~~~~L~~L~l~~n~  362 (757)
                      .++.+|+.+.++.++
T Consensus       317 ~~~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQ  331 (483)
T ss_pred             cCCCceEEEeccccc
Confidence            345667777776665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.35  E-value=0.00017  Score=73.19  Aligned_cols=131  Identities=18%  Similarity=0.074  Sum_probs=63.6

Q ss_pred             CCCCCCEEEccCCcccCcccc-cccCc--cccEEEcCCCc-CCCCCCCCcc-CCCCCCEEeCcCcccccc--CCcccCCC
Q 041016          349 TQTELTFLDLSENELEGTYPQ-WLSEL--NLGTVILSDNM-LTGSLPPPLF-ESRNLSVLVLSRNNFSGE--LPETIGQS  421 (757)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~~~-~~~~~--~L~~L~l~~n~-l~~~~~~~l~-~~~~L~~L~L~~n~l~~~--~~~~~~~~  421 (757)
                      .+..|+.++.+++...+..+- .++.-  .|+.+.+..++ ++..--..++ +++.|+.+++..+.....  +...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            456777777776654333222 22221  26677766664 2222112222 346667777666643211  22222346


Q ss_pred             CCccEEEccCCcccccC-----hHhhhccCCCCEEEccCCcccccCC--CCCCCCcccEEECcCC
Q 041016          422 TSVMVLMLSSNNFSGHV-----PKSISNIYRLLVLDLSNNSFSGEFP--AFGSDSLVGHVDISSN  479 (757)
Q Consensus       422 ~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~ls~n~l~~~~~--~~~~~~~L~~L~l~~n  479 (757)
                      +.|+.+.++++......     ...-..+..|+.+.+++++......  .+..+++|+.+++-++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            66777777766432111     1111334556666666666543222  4455555555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.87  E-value=0.00053  Score=65.87  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=40.4

Q ss_pred             CCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccccc-chhhhccCCCcEEE
Q 041016          231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEI-STWLFDLQGMKSLY  309 (757)
Q Consensus       231 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~  309 (757)
                      .+.++|++.++.++.+  .....++.|++|.|+-|.++..  ..+..|++|++|+|..|.+.... -..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3455566666655432  2234556666666666666533  23455556666666655554221 12334455555555


Q ss_pred             ccCCC
Q 041016          310 LGGNK  314 (757)
Q Consensus       310 L~~n~  314 (757)
                      |..|.
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            44444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.64  E-value=0.0014  Score=73.08  Aligned_cols=63  Identities=21%  Similarity=0.117  Sum_probs=30.0

Q ss_pred             cCCCCCCEEEccCcc-CCccCchhccC-CCCCCEEEccccc-cccccC-ccccCCCCCCEEEccCCc
Q 041016          180 AGLKNLKQLILDDNL-IQGQIPAEIGN-LTNLHKLSLRQNK-FSGGIP-LSLLQLRKLETLDLQRNS  242 (757)
Q Consensus       180 ~~l~~L~~L~L~~n~-l~~~~p~~~~~-l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~  242 (757)
                      ..+++|+.|+++.+. ++...-..++. +++|++|.+.+|. ++...- .....++.|++|+++++.
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            344555566665555 33333233332 5566666655554 332211 112345556666666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=0.00049  Score=66.04  Aligned_cols=98  Identities=29%  Similarity=0.285  Sum_probs=49.8

Q ss_pred             CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccC-chhccCCCCCCEEEc
Q 041016          136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI-PAEIGNLTNLHKLSL  214 (757)
Q Consensus       136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L  214 (757)
                      +.+.|++-++.++++  ....+|+.|++|.||-|+|+..  ..+..|++|+.|+|..|.|...- -.-+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            334444444444422  1223445555555555554432  22445555555555555554221 122456777777777


Q ss_pred             cccccccccCc-----cccCCCCCCEEE
Q 041016          215 RQNKFSGGIPL-----SLLQLRKLETLD  237 (757)
Q Consensus       215 ~~n~l~~~~~~-----~l~~l~~L~~L~  237 (757)
                      ..|.-.+.-+.     .+.-+++|++||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            77766554443     244567777775

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.05  E-value=0.0068  Score=34.52  Aligned_cols=12  Identities=50%  Similarity=0.562  Sum_probs=5.2

Q ss_pred             CCEEeCCCCCCC
Q 041016          655 LKSLNLSYNQLQ  666 (757)
Q Consensus       655 L~~L~Ls~N~l~  666 (757)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.68  E-value=0.013  Score=33.35  Aligned_cols=18  Identities=67%  Similarity=1.016  Sum_probs=8.7

Q ss_pred             CCEEeCCCCcCCCCcCccc
Q 041016          137 LTYLDLKDNNLNGSIPSQL  155 (757)
Q Consensus       137 L~~L~Ls~n~l~~~~p~~l  155 (757)
                      |++|||++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555554 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.42  E-value=0.0051  Score=68.49  Aligned_cols=131  Identities=22%  Similarity=0.120  Sum_probs=72.1

Q ss_pred             CCCCCCEEEccCCcCCCc--ccccccCCCCCCEEEccCc-cCCccC----chhccCCCCCCEEEccccc-cccccCcccc
Q 041016          157 NLRYLEFLDLSANAIEGK--LSSRVAGLKNLKQLILDDN-LIQGQI----PAEIGNLTNLHKLSLRQNK-FSGGIPLSLL  228 (757)
Q Consensus       157 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~  228 (757)
                      .++.|+.|.+..+.-...  .......+++|+.|+++++ ......    ......+.+|+.|+++++. ++...-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356666666666543222  2334456677777777762 111111    1223456778888888877 4433333333


Q ss_pred             -CCCCCCEEEccCCc-CcccCcc-cccCCCCCCEEEccCCCCCC--ccchhhhcCCCCCEEEcc
Q 041016          229 -QLRKLETLDLQRNS-LSGEIPE-DIGTLANITILALSNNALTG--AIPQSIRNMTKLVTLRLD  287 (757)
Q Consensus       229 -~l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~  287 (757)
                       .+++|++|.+.++. ++...-. ....+++|++|+++++....  .+.....++++++.+.+.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence             27788888877666 4432222 23456778888888776531  122334446666665443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.58  E-value=0.0012  Score=61.71  Aligned_cols=92  Identities=26%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             CCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhcc
Q 041016          125 EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG  204 (757)
Q Consensus       125 ~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~  204 (757)
                      .+|...+......+.||++.|++. ..-..|..++.|..||++.|.+. ..|..+.....++.+++..|..+ ..|.+++
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~  108 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK  108 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence            344455566666666666666654 33334444555555555555554 34444444444555555554444 4455555


Q ss_pred             CCCCCCEEEcccccc
Q 041016          205 NLTNLHKLSLRQNKF  219 (757)
Q Consensus       205 ~l~~L~~L~L~~n~l  219 (757)
                      ..++++++++..|.+
T Consensus       109 k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccCCcchhhhccCcc
Confidence            555555555555543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.13  E-value=0.0013  Score=71.33  Aligned_cols=132  Identities=23%  Similarity=0.252  Sum_probs=58.4

Q ss_pred             CCEEEccCccCCcc----CchhccCCCCCCEEEcccccccc----ccCccc----cCCCCCCEEEccCCcCcccC----c
Q 041016          185 LKQLILDDNLIQGQ----IPAEIGNLTNLHKLSLRQNKFSG----GIPLSL----LQLRKLETLDLQRNSLSGEI----P  248 (757)
Q Consensus       185 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l----~~l~~L~~L~l~~n~l~~~~----~  248 (757)
                      +++|++..|.+++.    +.+.+.....++.++++.|.+..    .++.++    ....++++|++++|.++...    .
T Consensus       146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~  225 (478)
T KOG4308|consen  146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD  225 (478)
T ss_pred             HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence            34444444444322    23334445555555555555421    111222    23455666666666554211    1


Q ss_pred             ccccCCCC-CCEEEccCCCCCCcc----chhhhcC-CCCCEEEccCCccccccchh----hhccCCCcEEEccCCCCc
Q 041016          249 EDIGTLAN-ITILALSNNALTGAI----PQSIRNM-TKLVTLRLDSNVLSGEISTW----LFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       249 ~~l~~l~~-L~~L~L~~n~l~~~~----~~~l~~l-~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~  316 (757)
                      ..+...+. +..+++..|.+.+..    .+.+..+ ..+++++++.|.++......    +..++.++.+.++.|.+.
T Consensus       226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            12233333 444566666554321    1222333 44555666666555333222    233445555555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.91  E-value=0.0013  Score=71.49  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=24.8

Q ss_pred             CccEEEccCCcccccChH----hhhccCCCCEEEccCCccc
Q 041016          423 SVMVLMLSSNNFSGHVPK----SISNIYRLLVLDLSNNSFS  459 (757)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~ls~n~l~  459 (757)
                      .+..+.|.+|.+......    .+...+.|+.|++++|.+.
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            377888888887754433    3445567777777777765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.36  E-value=0.22  Score=29.53  Aligned_cols=16  Identities=44%  Similarity=0.538  Sum_probs=7.9

Q ss_pred             CCCCEEeCCCCCCCcc
Q 041016          653 KGLKSLNLSYNQLQGN  668 (757)
Q Consensus       653 ~~L~~L~Ls~N~l~~~  668 (757)
                      ++|+.|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00369        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555533

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.36  E-value=0.22  Score=29.53  Aligned_cols=16  Identities=44%  Similarity=0.538  Sum_probs=7.9

Q ss_pred             CCCCEEeCCCCCCCcc
Q 041016          653 KGLKSLNLSYNQLQGN  668 (757)
Q Consensus       653 ~~L~~L~Ls~N~l~~~  668 (757)
                      ++|+.|+|++|+++..
T Consensus         2 ~~L~~L~L~~N~l~~l   17 (26)
T smart00370        2 PNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCEEECCCCcCCcC
Confidence            3445555555555533

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.43  E-value=0.25  Score=25.97  Aligned_cols=10  Identities=50%  Similarity=0.700  Sum_probs=3.2

Q ss_pred             CCEEeCCCCc
Q 041016          137 LTYLDLKDNN  146 (757)
Q Consensus       137 L~~L~Ls~n~  146 (757)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3334444333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.88  E-value=0.31  Score=28.89  Aligned_cols=20  Identities=45%  Similarity=0.504  Sum_probs=11.5

Q ss_pred             CCCCEEeCCCCcCccCCCCC
Q 041016          677 EILETLDLSHNSLSGKIPQT  696 (757)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~p~~  696 (757)
                      ++|++|+|++|+|+...++.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666443333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.88  E-value=0.31  Score=28.89  Aligned_cols=20  Identities=45%  Similarity=0.504  Sum_probs=11.5

Q ss_pred             CCCCEEeCCCCcCccCCCCC
Q 041016          677 EILETLDLSHNSLSGKIPQT  696 (757)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~p~~  696 (757)
                      ++|++|+|++|+|+...++.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHH
Confidence            45666666666666443333

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.70  E-value=0.0093  Score=56.03  Aligned_cols=88  Identities=19%  Similarity=0.245  Sum_probs=55.1

Q ss_pred             cccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCC
Q 041016          154 QLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL  233 (757)
Q Consensus       154 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  233 (757)
                      .+......+.||++.|++. ..-..|+-++.|..|+++.|.+. ..|..++....++++++..|..+ ..|.++...+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            4455566777777777655 22334555566666777766665 56666666666666666666665 556666666666


Q ss_pred             CEEEccCCcCc
Q 041016          234 ETLDLQRNSLS  244 (757)
Q Consensus       234 ~~L~l~~n~l~  244 (757)
                      +++++..+.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            66666666543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.26  E-value=0.17  Score=46.89  Aligned_cols=81  Identities=21%  Similarity=0.190  Sum_probs=54.7

Q ss_pred             ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCc-chhhcc-CCCCCCEEEccCCc-CccccCcccCCCCCCCEEE
Q 041016          493 ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE-FPAFLS-QLSSLQVLNLRNTA-LEGSITDGLSNLTSLQILD  569 (757)
Q Consensus       493 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~  569 (757)
                      ++.++-++..+..+--+.+.+++.++.|.+.+|.-.+. --+.++ -.++|+.|++++|. |+...-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            66677777777766666777888888888888864322 112222 25788888888775 5555556677778888877


Q ss_pred             CcCC
Q 041016          570 LSNN  573 (757)
Q Consensus       570 ls~n  573 (757)
                      +.+=
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            7653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.18  E-value=0.1  Score=48.33  Aligned_cols=80  Identities=25%  Similarity=0.260  Sum_probs=58.2

Q ss_pred             cCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCcc-CCcchh-CCCCCCEEeCCCCc-CccCCCCCccCCCCCCEEe
Q 041016          631 YSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGN-IPSTFG-NLEILETLDLSHNS-LSGKIPQTFAKLQQLTSLY  707 (757)
Q Consensus       631 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~-~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~  707 (757)
                      ++.+|-++..|..+--+.+.++++++.|.+.++.--+. --+-++ -.++|+.|+|++|+ |+...-..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            47789999999877777788889999999988864321 001111 24789999999886 7665555677788888888


Q ss_pred             CCC
Q 041016          708 LSN  710 (757)
Q Consensus       708 ls~  710 (757)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.54  E-value=0.9  Score=26.26  Aligned_cols=18  Identities=22%  Similarity=0.250  Sum_probs=7.9

Q ss_pred             CCccEEEccCCcccccCh
Q 041016          422 TSVMVLMLSSNNFSGHVP  439 (757)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~  439 (757)
                      ++|++|++++|++++...
T Consensus         2 ~~L~~L~l~~n~i~~~g~   19 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGA   19 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHH
T ss_pred             CCCCEEEccCCcCCHHHH
Confidence            345555555555544333

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	757
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-43
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		8e-43
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-21
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		8e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-10
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-06
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		7e-08
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-08
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		1e-07
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		1e-06
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		1e-06
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-06
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-06
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-06
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-06
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		3e-06
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		6e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		4e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-05
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		8e-05
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		5e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		8e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		8e-04

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 224/767 (29%), Positives = 332/767 (43%), Gaps = 113/767 (14%)
Query: 57  LETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLD 116
           L  W+S+ + C ++ V CR      +VT +DL++  PL+ +  S V + +  +  L +L 
Sbjct: 30  LPDWSSNKNPCTFDGVTCRD----DKVTSIDLSSK-PLN-VGFSAVSSSLLSLTGLESLF 83
Query: 117 LSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPS--QLFNLRYLEFLDLSANAIE-- 172
           LS + + G V  +GF     LT LDL  N+L+G + +   L +   L+FL++S+N ++  
Sbjct: 84  LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 173 GKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG-----NLTNLHKLSLRQNKFSGGIPLSL 227
           GK+S  +  L +L+ L L  N I G     +G         L  L++  NK SG + +S 
Sbjct: 142 GKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS- 197
Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
            +   LE LD+  N+ S  IP  +G  + +  L +S N L+G   ++I   T+L  L + 
Sbjct: 198 -RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 288 SNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL 347
           SN   G I                            +P   L  LSL      G IP +L
Sbjct: 256 SNQFVGPIPP--------------------------LPLKSLQYLSLAENKFTGEIPDFL 289
Query: 348 STQTE-LTFLDLSENELEGTYPQWLSELNLGTVILSD-NMLTGSLP-PPLFESRNLSVLV 404
           S   + LT LDLS N   G  P +    +L   +    N  +G LP   L + R L VL 
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 405 LSRNNFSGELPETIGQ-STSVMVLMLSSNNFSGHV-PKSISNIYRLLV-LDLSNNSFSGE 461
           LS N FSGELPE++   S S++ L LSSNNFSG + P    N    L  L L NN F+G+
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409
Query: 462 FPAFGSD-SLVGHVDISSNRFSGEVPSSFGV--TILMLSLSENKFSGQLPXXXXXXXXXX 518
            P   S+ S +  + +S N  SG +PSS G    +  L L  N   G++P          
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 519 XXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGK 578
                    TGE P+          ++L N  L G I   +  L +L IL LSNN+  G 
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 579 IPSSFGNLQGMI----DTPSILPTLPEIFSFPVEIQDLIVNWKNSKR-------GLSSKS 627
           IP+  G+ + +I    +T     T+P   +   +   +  N+   KR       G+  + 
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 628 LAIYSLMDLSN------NQLSGEIPXXXXXXXXXXXXX-------------XXYNQLQGN 668
               +L++         N+LS   P                            YN L G 
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 669 IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES-------- 720
           IP   G++  L  L+L HN +SG IP     L+ L  L LS+NKL GRIP++        
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 721 -------------PQMDR--QIDPVIYANNSGLCGMQIQVVCPEDVQ 752
                        P+M +     P  + NN GLCG  +    P +  
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 754

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  172 bits (435), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 224/767 (29%), Positives = 332/767 (43%), Gaps = 113/767 (14%)
Query: 57  LETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLD 116
           L  W+S+ + C ++ V CR      +VT +DL++  PL+ +  S V + +  +  L +L 
Sbjct: 27  LPDWSSNKNPCTFDGVTCRD----DKVTSIDLSSK-PLN-VGFSAVSSSLLSLTGLESLF 80
Query: 117 LSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPS--QLFNLRYLEFLDLSANAIE-- 172
           LS + + G V  +GF     LT LDL  N+L+G + +   L +   L+FL++S+N ++  
Sbjct: 81  LSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 173 GKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG-----NLTNLHKLSLRQNKFSGGIPLSL 227
           GK+S  +  L +L+ L L  N I G     +G         L  L++  NK SG + +S 
Sbjct: 139 GKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVS- 194
Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
            +   LE LD+  N+ S  IP  +G  + +  L +S N L+G   ++I   T+L  L + 
Sbjct: 195 -RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 288 SNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL 347
           SN   G I                            +P   L  LSL      G IP +L
Sbjct: 253 SNQFVGPIPP--------------------------LPLKSLQYLSLAENKFTGEIPDFL 286
Query: 348 STQTE-LTFLDLSENELEGTYPQWLSELNLGTVILSD-NMLTGSLP-PPLFESRNLSVLV 404
           S   + LT LDLS N   G  P +    +L   +    N  +G LP   L + R L VL 
Sbjct: 287 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 346
Query: 405 LSRNNFSGELPETIGQ-STSVMVLMLSSNNFSGHV-PKSISNIYRLLV-LDLSNNSFSGE 461
           LS N FSGELPE++   S S++ L LSSNNFSG + P    N    L  L L NN F+G+
Sbjct: 347 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 406
Query: 462 FPAFGSD-SLVGHVDISSNRFSGEVPSSFGV--TILMLSLSENKFSGQLPXXXXXXXXXX 518
            P   S+ S +  + +S N  SG +PSS G    +  L L  N   G++P          
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 519 XXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGK 578
                    TGE P+          ++L N  L G I   +  L +L IL LSNN+  G 
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 579 IPSSFGNLQGMI----DTPSILPTLPEIFSFPVEIQDLIVNWKNSKR-------GLSSKS 627
           IP+  G+ + +I    +T     T+P   +   +   +  N+   KR       G+  + 
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 628 LAIYSLMDLSN------NQLSGEIPXXXXXXXXXXXXX-------------XXYNQLQGN 668
               +L++         N+LS   P                            YN L G 
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 669 IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES-------- 720
           IP   G++  L  L+L HN +SG IP     L+ L  L LS+NKL GRIP++        
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 721 -------------PQMDR--QIDPVIYANNSGLCGMQIQVVCPEDVQ 752
                        P+M +     P  + NN GLCG  +    P +  
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNAD 751

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 52/304 (17%)
Query: 23  LCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCR--WEMVRCRSRGPS 80
           LC P+D K ALL+ K     DL + ++       L +W  ++DCC   W  V C +   +
Sbjct: 2   LCNPQD-KQALLQIKK----DLGNPTT-------LSSWLPTTDCCNRTWLGVLCDTDTQT 49
Query: 81  QEVTGLDLNNL-----FPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLT 135
             V  LDL+ L     +P+ S + ++       I  +       N++ G +P    A LT
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-------NNLVGPIP-PAIAKLT 101
Query: 136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLI 195
           +L YL +   N++G+IP  L  ++ L  LD S NA+ G L   ++ L NL  +  D N I
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 196 QGQIPAEIGNLTNLH-KLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGE-------- 246
            G IP   G+ + L   +++ +N+ +G IP +   L  L  +DL RN L G+        
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 247 ------------IPEDIGTLA---NITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL 291
                       +  D+G +    N+  L L NN + G +PQ +  +  L +L +  N L
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 292 SGEI 295
            GEI
Sbjct: 281 CGEI 284

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 89.4 bits (220), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 131/325 (40%), Gaps = 78/325 (24%)
Query: 136 RLTYLDLKDNNLNGS--IPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN 193
           R+  LDL   NL     IPS L NL YL FL              + G+ NL        
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFL-------------YIGGINNL-------- 89
Query: 194 LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT 253
              G IP  I  LT LH L +     SG IP  L Q++ L TLD   N+LSG +P  I +
Sbjct: 90  --VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 254 LANITILALSNNALTGAIPQSIRNMTKLVT-LRLDSNVLSGEISTWLFDLQGMKSLYLGG 312
           L N+  +    N ++GAIP S  + +KL T + +  N L+G+I     +L          
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---------- 197
Query: 313 NKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWL- 371
                                                   L F+DLS N LEG       
Sbjct: 198 ---------------------------------------NLAFVDLSRNMLEGDASVLFG 218
Query: 372 SELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSS 431
           S+ N   + L+ N L   L   +  S+NL+ L L  N   G LP+ + Q   +  L +S 
Sbjct: 219 SDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 432 NNFSGHVPKSISNIYRLLVLDLSNN 456
           NN  G +P+   N+ R  V   +NN
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANN 301

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 123/277 (44%), Gaps = 20/277 (7%)
Query: 325 PKCMLTELSLRSCSVRGSIPLWLSTQTE---LTFLDLSENELEGTYP--------QWLSE 373
           P  + + L    C  R  + +   T T+   +  LDLS   L   YP         +L+ 
Sbjct: 21  PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80
Query: 374 LNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNN 433
           L +G +    N L G +PP + +   L  L ++  N SG +P+ + Q  +++ L  S N 
Sbjct: 81  LYIGGI----NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136
Query: 434 FSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDS-LVGHVDISSNRFSGEVPSSFG- 490
            SG +P SIS++  L+ +    N  SG  P ++GS S L   + IS NR +G++P +F  
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 491 VTILMLSLSENKFSGQLPXXXXXXXXXXXXXXXXXXXTGEFPAFXXXXXXXXVLNLRNTA 550
           + +  + LS N   G                        +             L+LRN  
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG-LDLRNNR 255
Query: 551 LEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQ 587
           + G++  GL+ L  L  L++S NNL G+IP   GNLQ
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 14/221 (6%)
Query: 529 GEFPAFXXXXXXXXVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIP---SSFGN 585
           G  P           L + +T + G+I D LS + +L  LD S N L G +P   SS  N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 586 LQGM-IDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYS-----LMDLSNN 639
           L G+  D   I   +P+ +        L  +   S+  L+ K    ++      +DLS N
Sbjct: 151 LVGITFDGNRISGAIPDSYG---SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 640 QLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAK 699
            L G+                  N L  ++    G  + L  LDL +N + G +PQ   +
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 700 LQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCG 740
           L+ L SL +S N L G IP+   + R  D   YANN  LCG
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQR-FDVSAYANNKCLCG 306

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 639 NQLSGEIPXXXXXXXXXXXXXXXYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFA 698
           N L G IP               +  + G IP     ++ L TLD S+N+LSG +P + +
Sbjct: 87  NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 699 KLQQLTSLYLSNNKLSGRIPES 720
            L  L  +    N++SG IP+S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDS 168

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 37/235 (15%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +  L+ + ++ N +    P    ANLT LT L L +N +    P  L NL  L 
Sbjct: 78  ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L+LS+N I     S ++GL +L+QL    N +    P  + NLT L +L +  NK S  
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD- 187
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
             +S+L +L  LE+L    N +S   P                 +DIGTLA   N+T L 
Sbjct: 188 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 245
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           L+NN ++   P  +  +TKL  L+L +N +S  IS  L  L  + +L L  N+L+
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 296

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 37/235 (15%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +  L+ + ++ N +    P    ANLT LT L L +N +    P  L NL  L 
Sbjct: 78  ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L+LS+N I     S ++GL +L+QL    N +    P  + NLT L +L +  NK S  
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD- 187
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
             +S+L +L  LE+L    N +S   P                 +DIGTLA   N+T L 
Sbjct: 188 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 245
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           L+NN ++   P  +  +TKL  L+L +N +S  IS  L  L  + +L L  N+L+
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 296

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 115/235 (48%), Gaps = 37/235 (15%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +  L+ + ++ N +    P    ANLT LT L L +N +    P  L NL  L 
Sbjct: 78  ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L+LS+N I     S ++GL +L+QL    N +    P  + NLT L +L +  NK S  
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD- 187
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
             +S+L +L  LE+L    N +S   P                 +DIGTLA   N+T L 
Sbjct: 188 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 245
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           L+NN ++   P  +  +TKL  L+L +N +S  IS  L  L  + +L L  N+L+
Sbjct: 246 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 296

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 13/241 (5%)
Query: 150 SIPSQLFN-LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQIPAEIGNLT 207
            +P+  F   R L  L L +N +    ++   GL  L+QL L DN  ++   PA    L 
Sbjct: 46  HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 208 NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED-IGTLANITILALSNNA 266
            LH L L +       P     L  L+ L LQ N+L   +P+D    L N+T L L  N 
Sbjct: 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNR 164
Query: 267 LTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK 326
           ++    ++ R +  L  L L  N ++        DL  + +LYL  N L      ++ P 
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224
Query: 327 CMLTELSLRS----CSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILS 382
             L  L L      C  R   PLW   Q        S +E+  + PQ L+  +L  +  +
Sbjct: 225 RALQYLRLNDNPWVCDCRAR-PLWAWLQK----FRGSSSEVPCSLPQRLAGRDLKRLAAN 279
Query: 383 D 383
           D
Sbjct: 280 D 280

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 100/241 (41%), Gaps = 13/241 (5%)
Query: 150 SIPSQLFN-LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQIPAEIGNLT 207
            +P+  F   R L  L L +N +    ++   GL  L+QL L DN  ++   PA    L 
Sbjct: 45  HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 104
Query: 208 NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED-IGTLANITILALSNNA 266
            LH L L +       P     L  L+ L LQ N+L   +P+D    L N+T L L  N 
Sbjct: 105 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNR 163
Query: 267 LTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK 326
           ++    ++ R +  L  L L  N ++        DL  + +LYL  N L      ++ P 
Sbjct: 164 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 223
Query: 327 CMLTELSLRS----CSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILS 382
             L  L L      C  R   PLW   Q        S +E+  + PQ L+  +L  +  +
Sbjct: 224 RALQYLRLNDNPWVCDCRAR-PLWAWLQK----FRGSSSEVPCSLPQRLAGRDLKRLAAN 278
Query: 383 D 383
           D
Sbjct: 279 D 279

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +  L+ + ++ N +    P    ANLT LT L L +N +    P  L NL  L 
Sbjct: 82  ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 136
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L+LS+N I     S ++GL +L+QL   + +   +    + NLT L +L +  NK S  
Sbjct: 137 RLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSD- 190
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
             +S+L +L  LE+L    N +S   P                 +DIGTLA   N+T L 
Sbjct: 191 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 248
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           L+NN ++   P  +  +TKL  L+L +N +S  IS  L  L  + +L L  N+L+
Sbjct: 249 LANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQLE 299

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +  L+ + ++ N +    P    ANLT LT L L +N +    P  L NL  L 
Sbjct: 83  ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L+LS+N I     S ++GL +L+QL   + +   +    + NLT L +L +  NK S  
Sbjct: 138 RLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLK---PLANLTTLERLDISSNKVSD- 191
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
             +S+L +L  LE+L    N +S   P                 +DIGTLA   N+T L 
Sbjct: 192 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 249
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           L+NN ++   P  +  +TKL  L+L +N +S  IS  L  L  + +L L  N+L+
Sbjct: 250 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 300

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +  L+ + ++ N +    P    ANLT LT L L +N +    P  L NL  L 
Sbjct: 78  ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L+LS+N I     S ++GL +L+QL   + +   +    + NLT L +L +  NK S  
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLK---PLANLTTLERLDISSNKVSD- 186
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
             +S+L +L  LE+L    N +S   P                 +DIGTLA   N+T L 
Sbjct: 187 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 244
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           L+NN ++   P  +  +TKL  L+L +N +S  IS  L  L  + +L L  N+L+
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 295

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 38/235 (16%)
Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +  L+ + ++ N +    P    ANLT LT L L +N +    P  L NL  L 
Sbjct: 78  ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 132
Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L+LS+N I     S ++GL +L+QL   + +   +    + NLT L +L +  NK S  
Sbjct: 133 RLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLK---PLANLTTLERLDISSNKVSD- 186
Query: 223 IPLSLL-QLRKLETLDLQRNSLSGEIP-----------------EDIGTLA---NITILA 261
             +S+L +L  LE+L    N +S   P                 +DIGTLA   N+T L 
Sbjct: 187 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLD 244
Query: 262 LSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           L+NN ++   P  +  +TKL  L+L +N +S  IS  L  L  + +L L  N+L+
Sbjct: 245 LANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 295

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 86/177 (48%), Gaps = 6/177 (3%)
Query: 140 LDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQ 198
           LDL+ N L+ S+PS+ F+ L  L  L L+ N ++   +     LKNL+ L + DN +Q  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANI 257
                  L NL +L L +N+     P     L KL  L L  N L   +P+ +   L ++
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSL 159
Query: 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
             L L NN L      +   +T+L TL+LD+N L   +    FD L+ +K L L  N
Sbjct: 160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 101 VVLAPIF-RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NL 158
            +L  +F     L  L L+ N +  ++    F  LT L  L+L  N L GSI S++F NL
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENL 346
Query: 159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNK 218
             LE LDLS N I         GL NLK+L LD N ++         LT+L K+ L  N 
Sbjct: 347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406
Query: 219 FSGGIP 224
           +    P
Sbjct: 407 WDCSCP 412

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 88/199 (44%), Gaps = 18/199 (9%)
Query: 107 FRIRSLMTLDLSYNSMQGEVPGTGFANL--TRLTYLDLKDNNLNGSIPSQL-------FN 157
           F+  S+ TLDLS N  +  +    F  +  T++  L L ++   GS            F 
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 158 LRYLEF-----LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKL 212
            + LE       DLS + I   L S  +   +L+QL L  N I          LT+L KL
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 213 SLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAI 271
           +L QN F G I   + + L KLE LDL  N +     +    L N+  LAL  N L  ++
Sbjct: 329 NLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SV 386
Query: 272 PQSIRN-MTKLVTLRLDSN 289
           P  I + +T L  + L +N
Sbjct: 387 PDGIFDRLTSLQKIWLHTN 405

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 99/259 (38%), Gaps = 26/259 (10%)
Query: 126 VPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA-IEGKLSSRVAGLKN 184
           VP   F +   LT L L  N L G   +    L  LE LDLS NA +     +   GL +
Sbjct: 46  VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244
           L  L LD   +Q   P     L  L  L L+ N        +   L  L  L L  N + 
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 245 GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG 304
                    L ++  L L  N +    P + R++ +L+TL L +N LS   +  L  L+ 
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRS 225
Query: 305 MKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELE 364
           ++ L L       NDN  +             C  R   PLW   Q        S +E+ 
Sbjct: 226 LQYLRL-------NDNPWV-------------CDCRAR-PLWAWLQK----FRGSSSEVP 260
Query: 365 GTYPQWLSELNLGTVILSD 383
              PQ L+  +L  +  SD
Sbjct: 261 CNLPQRLAGRDLKRLAASD 279

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 95/238 (39%), Gaps = 26/238 (10%)
Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG 221
             LDL  N I+       A   +L++L L++N++    P    NL NL  L LR N+   
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK- 93
Query: 222 GIPLSLLQ-LRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTK 280
            IPL +   L  L  LD+  N +   +      L N+  L + +N L     ++   +  
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 281 LVTLRLDSNVLSGEISTWLFDLQGMKSL---YLGGNKLK-----------------WNDN 320
           L  L L+   L+   +  L  L G+  L   +L  N ++                 W   
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 321 VSIVPKCM----LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL 374
            ++ P C+    LT LS+  C++     L +     L FL+LS N +       L EL
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 22/262 (8%)
Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
           +LR ++  DL    +   L    A L       L +N I      +  NL NLH L L  
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIR 276
           NK S   P +   L KLE L L +N L  E+PE +     +  L +  N +T        
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 277 NMTKLVTLRLDSNVL-SGEISTWLFDLQGMKSLYLGGNKLKWND-NVSIVPKCM---LTE 331
            + +++ + L +N L S  I    F  QGMK L    + ++  D N++ +P+ +   LTE
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAF--QGMKKL----SYIRIADTNITTIPQGLPPSLTE 196
Query: 332 LSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSL 390
           L L    +       L     L  L LS N +       L+   +L  + L++N L   +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255
Query: 391 PPPLFESRNLSVLVLSRNNFSG 412
           P  L + + + V+ L  NN S 
Sbjct: 256 PGGLADHKYIQVVYLHNNNISA 277

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 111/262 (42%), Gaps = 22/262 (8%)
Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
           +LR ++  DL    +   L    A L       L +N I      +  NL NLH L L  
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALLD------LQNNKITEIKDGDFKNLKNLHTLILIN 85
Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIR 276
           NK S   P +   L KLE L L +N L  E+PE +     +  L +  N +T        
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFN 142
Query: 277 NMTKLVTLRLDSNVL-SGEISTWLFDLQGMKSLYLGGNKLKWND-NVSIVPKCM---LTE 331
            + +++ + L +N L S  I    F  QGMK L    + ++  D N++ +P+ +   LTE
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAF--QGMKKL----SYIRIADTNITTIPQGLPPSLTE 196
Query: 332 LSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSL 390
           L L    +       L     L  L LS N +       L+   +L  + L++N L   +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KV 255
Query: 391 PPPLFESRNLSVLVLSRNNFSG 412
           P  L + + + V+ L  NN S 
Sbjct: 256 PGGLADHKYIQVVYLHNNNISA 277

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEG 173
           LDL  NS++  +P   F  LT LT L L  N L  S+P+ +FN L  L +L+LS N ++ 
Sbjct: 33  LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 174 KLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
             +     L  LK+L L+ N +Q         LT L  L L QN+ 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 14/216 (6%)
Query: 105 PIFRIRSLMTLDLSYNSMQGEVPGTGFA--NLTRLTYLDLKDNNLN--GSIPSQLFNLRY 160
           P  +++SL  L  ++ S +G   G  F+  +L  L +LDL  N L+  G      F    
Sbjct: 320 PTLKLKSLKRL--TFTSNKG---GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 161 LEFLDLSANAIEGKLSSRVAGLKNLKQL-ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
           L++LDLS N +   +SS   GL+ L+ L     NL Q    +   +L NL  L +     
Sbjct: 375 LKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 220 SGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT-LANITILALSNNALTGAIPQSIRNM 278
                     L  LE L +  NS       DI T L N+T L LS   L    P +  ++
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 279 TKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
           + L  L + SN L   +   +FD L  ++ ++L  N
Sbjct: 494 SSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTN 528

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Query: 107 FR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFL 164
           FR +  L  L+L YN +Q    G  F +LT L  L L +N L  S+P  +F+ L  L+ L
Sbjct: 55  FRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 165 DLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP 224
            L  N ++   S     L  LK+L L+ N +Q         LTNL  LSL  N+      
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 225 LSLLQLRKLETLDL 238
            +  +L KL+T+ L
Sbjct: 173 GAFDRLGKLQTITL 186

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 4/134 (2%)
Query: 107 FR-IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFL 164
           FR +  L  L+L YN +Q    G  F +LT L  L L +N L  S+P  +F+ L  L+ L
Sbjct: 55  FRGLTKLTWLNLDYNQLQTLSAGV-FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL 112
Query: 165 DLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP 224
            L  N ++   S     L  LK+L L+ N +Q         LTNL  LSL  N+      
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 225 LSLLQLRKLETLDL 238
            +  +L KL+T+ L
Sbjct: 173 GAFDRLGKLQTITL 186

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 117/284 (41%), Gaps = 36/284 (12%)
Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK 174
           L+ S+N +   +  T F+ L  LT+LDL    +         +   L+ L L+AN +   
Sbjct: 38  LEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM 96
Query: 175 LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-----GIPLSLLQ 229
             + ++G K LK L      I       + N   L  L L  N  S      G P     
Sbjct: 97  AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT---- 152
Query: 230 LRKLETLDLQRNSLSGEIPEDIGTLANITILA--LSNNALTGAIPQSIRNMTKLVTLRLD 287
             KL+ LD Q N++     ED+ +L   T L+  L+ N + G  P +            D
Sbjct: 153 -EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-----------FD 200
Query: 288 SNVLS----GEISTWLFDLQGMK-----SLYLGGNKLKWNDNVSIVPKCMLTELSLRSCS 338
           S V      G     L   +G+K     SL+LG  +   ++++S      L E+S+ S +
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260
Query: 339 VRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILS 382
           ++      +S+ T   F  L E +L  T+   LSEL  G V LS
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATH---LSELPSGLVGLS 301

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 247 IPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGM 305
           +P+++    ++T++ LSNN ++    QS  NMT+L+TL L  N L   I    FD L+ +
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 306 KSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346
           + L L GN      ++S+VP+    +LS  S    G+ PL+
Sbjct: 105 RLLSLHGN------DISVVPEGAFNDLSALSHLAIGANPLY 139

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	757
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-101
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-84
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-54
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-22
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-40
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-70
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-50
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-26
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-51
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-47
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-46
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-35
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-28
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-25
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  536 bits (1383), Expect = 0.0
 Identities = 220/784 (28%), Positives = 342/784 (43%), Gaps = 67/784 (8%)

Query: 16  SILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCR 75
           S   S        +   L+ FK      L D +        L  W+S+ + C ++ V CR
Sbjct: 1   SFQASPSQSL-YREIHQLISFKD----VLPDKNL-------LPDWSSNKNPCTFDGVTCR 48

Query: 76  SRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLT 135
                 +VT +DL++     ++  S V + +  +  L +L LS + + G V   GF    
Sbjct: 49  ----DDKVTSIDLSSKP--LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSA 100

Query: 136 RLTYLDLKDNNLNGSIPS--QLFNLRYLEFLDLSANAIEGKLS-SRVAGLKNLKQLILDD 192
            LT LDL  N+L+G + +   L +   L+FL++S+N ++     S    L +L+ L L  
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

Query: 193 NLIQGQIPAEI---GNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPE 249
           N I G              L  L++  NK SG + +S  +   LE LD+  N+ S  IP 
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF 218

Query: 250 DIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLY 309
            +G  + +  L +S N L+G   ++I   T+L  L + SN   G I      L+ ++ L 
Sbjct: 219 -LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLS 275

Query: 310 LGGNKLKWNDNVSIVPKC-MLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYP 368
           L  NK        +   C  LT L L      G++P +  + + L  L LS N   G  P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 369 -QWLSEL-NLGTVILSDNMLTGSLPPPLFE-SRNLSVLVLSRNNFSGELPETIGQS--TS 423
              L ++  L  + LS N  +G LP  L   S +L  L LS NNFSG +   + Q+   +
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA-FGSDSLVGHVDISSNRFS 482
           +  L L +N F+G +P ++SN   L+ L LS N  SG  P+  GS S +  + +  N   
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 483 GEVPSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSS 540
           GE+P       T+  L L  N  +G++P  LSN + L  + L +N LTGE P ++ +L +
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515

Query: 541 LQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID----TPSIL 596
           L +L L N +  G+I   L +  SL  LDL+ N   G IP++     G I          
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575

Query: 597 PTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLK 656
             +              +      R      L+  +  ++++    G    +  +   + 
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635

Query: 657 SLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGR 716
            L++SYN L G IP   G++  L  L+L HN +SG IP     L+ L  L LS+NKL GR
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 717 IPES---------------------PQMD--RQIDPVIYANNSGLCGMQIQVVCPEDVQP 753
           IP++                     P+M       P  + NN GLCG  +    P +   
Sbjct: 696 IPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755

Query: 754 PPDS 757
               
Sbjct: 756 YAHH 759

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  325 bits (835), Expect = e-101
 Identities = 140/639 (21%), Positives = 220/639 (34%), Gaps = 54/639 (8%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
           S    D S+  +  +VP     N+T    L+L  N L     +       L  LD+  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
           I          L  LK L L  N +           TNL +L L  N          ++ 
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNM--TKLVTLRLDS 288
           + L TLDL  N LS         L N+  L LSNN +     + +     + L  L L S
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 289 NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC---MLTELSLRSCSVRGSIPL 345
           N +          +  +  L+L   +L  +    +  +     +  LSL +  +  +   
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 346 WLS--TQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSV 402
                  T LT LDLS N L        + L  L    L  N +       L    N+  
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300

Query: 403 LVLSRNNFSGEL---------PETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDL 453
           L L R+     +           +      +  L +  N+  G      + +  L  L L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360

Query: 454 SNNSFSGE------FPAFGSDSLVGHVDISSNRFSGEVPSSFGV--TILMLSLSENKFSG 505
           SN+  S        F +     L   ++++ N+ S     +F     + +L L  N+   
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLH-ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 506 QLPQN-LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG--SITDGLSNL 562
           +L       L  +  + L  N          + + SLQ L LR  AL+   S       L
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 563 TSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQD--LIVNWKNSK 620
            +L ILDLSNNN+          L+ +                 +++Q   L   WK++ 
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEI---------------LDLQHNNLARLWKHAN 524

Query: 621 RGLSSKSLAIYS---LMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLE 677
            G     L   S   +++L +N            L  LK ++L  N L     S F N  
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 678 ILETLDLSHNSLSGKIPQTFAK-LQQLTSLYLSNNKLSG 715
            L++L+L  N ++    + F    + LT L +  N    
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  271 bits (696), Expect = 5e-81
 Identities = 136/634 (21%), Positives = 216/634 (34%), Gaps = 90/634 (14%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
             L  L+L +N +      T FA  T LT L L  N++     +     + L  LDLS N
Sbjct: 73  PMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG--NLTNLHKLSLRQNKFSGGIPLSL 227
            +          L+NL++L+L +N IQ     E+     ++L KL L  N+     P   
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191

Query: 228 LQLRKLETLDLQRNSLSGEIPEDIG---TLANITILALSNNALTGAIPQSIRNM--TKLV 282
             + +L  L L    L   + E +       +I  L+LSN+ L+     +   +  T L 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342
            L L  N L+   +     L  ++  +L  N ++   + S+     +  L+L+       
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR------ 305

Query: 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLS 401
                      T   +S   L          L  L  + + DN + G          NL 
Sbjct: 306 ---------SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 402 VLVLSRNNFS-GELPETIGQS---TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNS 457
            L LS +  S   L      S   + + +L L+ N  S     + S +  L VLDL  N 
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 458 FSGEFP--AFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSG--QLPQNL 511
              E     +     +  + +S N++     +SF    ++  L L           P   
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRN--------TALEGSITDGLSNLT 563
             L  L  LDL +NN+       L  L  L++L+L++         A  G     L  L+
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536

Query: 564 SLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGL 623
            L IL+L +N         F +L                     E++ +           
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLF--------------------ELKII----------- 565

Query: 624 SSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFG-NLEILETL 682
                      DL  N L+    S   +   LKSLNL  N +       FG     L  L
Sbjct: 566 -----------DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 683 DLSHNSLSGKIP-----QTFAKLQQLTSLYLSNN 711
           D+  N              +          LS++
Sbjct: 615 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSH 648

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  269 bits (691), Expect = 2e-80
 Identities = 119/598 (19%), Positives = 204/598 (34%), Gaps = 102/598 (17%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL 194
                 D     L   +P  L                            N+  L L  N 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDLPT--------------------------NITVLNLTHNQ 36

Query: 195 IQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTL 254
           ++    A     + L  L +  N  S   P    +L  L+ L+LQ N LS    +     
Sbjct: 37  LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96

Query: 255 ANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNK 314
            N+T L L +N++             L+TL L  N LS         L+ ++ L L  NK
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 315 LKW--NDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLS 372
           ++   ++ + I     L +L L S  ++   P        L  L L+  +L  +  + L 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 373 E----LNLGTVILSDNMLTGSLPPPLFES---RNLSVLVLSRNNFSGELPETIGQSTSVM 425
                 ++  + LS++ L+       F      NL++L LS NN +    ++      + 
Sbjct: 217 LELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEV 485
              L  NN       S+  ++ +  L+L  +                   IS        
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ--------------SISLASLPKID 321

Query: 486 PSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP---AFLS-QLS 539
             SF     +  L++ +N   G      + L  L++L L ++  +        F+S   S
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 540 SLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIP-SSFGNLQGMIDTPSILPT 598
            L +LNL    +    +D  S L  L++LDL  N +  ++    +  L+           
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN---------- 431

Query: 599 LPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSL 658
                     I ++                       LS N+      +S   +  L+ L
Sbjct: 432 ----------IFEI----------------------YLSYNKYLQLTRNSFALVPSLQRL 459

Query: 659 NLSYNQLQG--NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
            L    L+   + PS F  L  L  LDLS+N+++         L++L  L L +N L+
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  264 bits (678), Expect = 2e-78
 Identities = 128/611 (20%), Positives = 203/611 (33%), Gaps = 85/611 (13%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
            +L  L L  NS+Q       F     L  LDL  N L+ +       L  L+ L LS N
Sbjct: 97  TNLTELHLMSNSIQKIKNNP-FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 170 AIEG--KLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSL 227
            I+        +    +LK+L L  N I+   P     +  L  L L   +    +   L
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 228 ---LQLRKLETLDLQRNSLSGEIPEDIGTLA--NITILALSNNALTGAIPQSIRNMTKLV 282
              L    +  L L  + LS         L   N+T+L LS N L      S   + +L 
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342
              L+ N +    S  L  L  ++ L L  +                T+ S+   S+   
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------------FTKQSISLASLPKI 320

Query: 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLT-GSLPPPLFES--- 397
                     L  L++ +N++ G      + L NL  + LS++  +  +L    F S   
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380

Query: 398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKS-ISNIYRLLVLDLSNN 456
             L +L L++N  S    +       + VL L  N     +       +  +  + LS N
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440

Query: 457 SFSGEFP-AFGSDSLVGHVDISSNRFSG--EVPSSFG--VTILMLSLSENKFSGQLPQNL 511
            +      +F     +  + +           PS F     + +L LS N  +      L
Sbjct: 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500

Query: 512 SNLSLLQHLDLHDNNLT--------GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLT 563
             L  L+ LDL  NNL         G    FL  LS L +LNL +   +    +   +L 
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

Query: 564 SLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGL 623
            L+I+DL  NNL     S F N                                      
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQ------------------------------------- 583

Query: 624 SSKSLAIYSLMDLSNNQLSGEIPSSLG-SLKGLKSLNLSYNQLQGNIPSTFGNLEILETL 682
              SL     ++L  N ++       G + + L  L++ +N       S    +  +   
Sbjct: 584 --VSLKS---LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638

Query: 683 DLSHNSLSGKI 693
             +   LS   
Sbjct: 639 HTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  214 bits (547), Expect = 5e-60
 Identities = 105/504 (20%), Positives = 172/504 (34%), Gaps = 99/504 (19%)

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
            E  D     L+ ++P+D+    NIT+L L++N L      +    ++L +L +  N +S
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 293 GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTE 352
                    L  +K L L  N+L                                +  T 
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNEL------------------------SQLSDKTFAFCTN 98

Query: 353 LTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFS 411
           LT L L  N ++        +  NL T+ LS N L+ +      +  NL  L+LS N   
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 412 GELPETIG--QSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDS 469
               E +    ++S+  L LSSN      P     I RL  L L+N              
Sbjct: 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 470 LVG----HVDISSNRFSGEVPSSFG----VTILMLSLSENKFSGQLPQNLSNLSLLQHLD 521
           L      ++ +S+++ S    ++F       + ML LS N  +     + + L  L++  
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278

Query: 522 LHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPS 581
           L  NN+   F   L  L +++ LNL+                S     +S  +L      
Sbjct: 279 LEYNNIQHLFSHSLHGLFNVRYLNLKR---------------SFTKQSISLASLPKIDDF 323

Query: 582 SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQL 641
           SF  L                                       K L     +++ +N +
Sbjct: 324 SFQWL---------------------------------------KCLEH---LNMEDNDI 341

Query: 642 SGEIPSSLGSLKGLKSLNLSYNQLQGN--IPSTFGNLEI--LETLDLSHNSLSGKIPQTF 697
            G   +    L  LK L+LS +          TF +L    L  L+L+ N +S      F
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 698 AKLQQLTSLYLSNNKLSGRIPESP 721
           + L  L  L L  N++   +    
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  185 bits (472), Expect = 6e-50
 Identities = 100/493 (20%), Positives = 162/493 (32%), Gaps = 60/493 (12%)

Query: 84  TGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANL--TRLTYLD 141
            GL LNN+    S+     L       S+  L LS + +      T F  L  T LT LD
Sbjct: 198 FGLFLNNVQLGPSLTEK--LCLELANTSIRNLSLSNSQLSTTSNTT-FLGLKWTNLTMLD 254

Query: 142 LKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL------- 194
           L  NNLN         L  LE+  L  N I+   S  + GL N++ L L  +        
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 195 --IQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIG 252
             +          L  L  L++  N   G        L  L+ L L  +  S     +  
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 253 ----TLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKS 307
                 + + IL L+ N ++     +   +  L  L L  N +  E++   +  L+ +  
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 308 LYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG--SIPLWLSTQTELTFLDLSENELEG 365
           +YL  NK       S      L  L LR  +++   S P        LT LDLS N +  
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 366 TYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSV 424
                L  L  L  + L  N L                  L ++   G     +   + +
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLA----------------RLWKHANPGGPIYFLKGLSHL 538

Query: 425 MVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSG 483
            +L L SN F     +   +++ L ++DL  N+ +      F +   +  +++  N  + 
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598

Query: 484 EVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQV 543
                FG                          L  LD+  N       +    ++ +  
Sbjct: 599 VEKKVFG---------------------PAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637

Query: 544 LNLRNTALEGSIT 556
            +     L     
Sbjct: 638 THTNIPELSSHYL 650

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (364), Expect = 6e-36
 Identities = 56/252 (22%), Positives = 95/252 (37%), Gaps = 45/252 (17%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
            D S  + + +VP      I +L+L+ N+       N +  S L  LD+  N ++   P 
Sbjct: 9   ADCSHLKLT-QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

Query: 534 FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTP 593
              +L  L+VLNL++  L        +  T+L  L L +N++     + F          
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ------- 120

Query: 594 SILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLK 653
                                           K+L     +DLS+N LS     +   L+
Sbjct: 121 --------------------------------KNLIT---LDLSHNGLSSTKLGTQVQLE 145

Query: 654 GLKSLNLSYNQLQGNIPSTFGNLEI--LETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
            L+ L LS N++Q              L+ L+LS N +    P  F  + +L  L+L+N 
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205

Query: 712 KLSGRIPESPQM 723
           +L   + E   +
Sbjct: 206 QLGPSLTEKLCL 217

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  278 bits (714), Expect = 4e-84
 Identities = 97/624 (15%), Positives = 189/624 (30%), Gaps = 98/624 (15%)

Query: 122 MQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAG 181
           M G  PG    +  R+T L L+    +G +P  +  L  LE L L ++  +         
Sbjct: 68  MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL---- 123

Query: 182 LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP--LSLLQLRKLETLDLQ 239
                             P  I    +  +    +  +               L    + 
Sbjct: 124 ----------------FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 240 RNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWL 299
            +     I +        T +   +N +T  + +++  +TKL    + ++    E     
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN---- 222

Query: 300 FDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLS 359
              +  ++      +    +++       LT++ + +C     +P +L    E+  ++++
Sbjct: 223 -ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 360 ENELEG-----TYPQWLSEL----NLGTVILSDNML-TGSLPPPLFESRNLSVLVLSRNN 409
            N            Q L++      +  + +  N L T  +   L + + L +L    N 
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 410 FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDS 469
             G+LP   G    +  L L+ N  +           ++  L  ++N        F + S
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 470 LVG--HVDISSNRFSGEVPSSFG---------VTILMLSLSENKFSGQLPQNLSNLSLLQ 518
           +     +D S N        +F          + +  ++LS N+ S    +  S  S L 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 519 HLDLHDNNLTG-------EFPAFLSQLSSLQVLNLRNTALEGSITD-GLSNLTSLQILDL 570
            ++L  N LT        +          L  ++LR   L     D   + L  L  +DL
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 571 SNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAI 630
           S N+   K P+   N   +                                    K   I
Sbjct: 521 SYNSF-SKFPTQPLNSSTL------------------------------------KGFGI 543

Query: 631 YSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS 690
            +  D   N+   E P  +     L  L +  N ++        N   +  LD+  N   
Sbjct: 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNI 600

Query: 691 GKIPQTFAKLQQLTSLYLSNNKLS 714
                      +     L  +K  
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (551), Expect = 6e-61
 Identities = 73/520 (14%), Positives = 166/520 (31%), Gaps = 82/520 (15%)

Query: 82  EVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLD 141
           ++    +N+     SI  S              +    N++   V       LT+L    
Sbjct: 160 DLIKDCINSDPQQKSIKKS-----SRITLKDTQIGQLSNNI-TFVSKA-VMRLTKLRQFY 212

Query: 142 LKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPA 201
           + ++        + +     E+              +   LK+L  + + +     ++P 
Sbjct: 213 MGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEVYNCPNLTKLPT 267

Query: 202 EIGNLTNLHKLSLRQNKF--------SGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIG 252
            +  L  +  +++  N+                     K++ + +  N+L +  +   + 
Sbjct: 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ 327

Query: 253 TLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGG 312
            +  + +L    N L G +P +  +  KL +L L  N ++   + +    + +++L    
Sbjct: 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386

Query: 313 NKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLS 372
           NKL        +P         +S              + ++ +D S NE+     +   
Sbjct: 387 NKL------KYIPNI----FDAKSV-------------SVMSAIDFSYNEIGSVDGKNFD 423

Query: 373 ELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSN 432
                            L P  F+  N+S + LS N  S    E     + +  + L  N
Sbjct: 424 ----------------PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 433 NFSG-------HVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVG--HVDISSNRFSG 483
             +           ++  N Y L  +DL  N  +     F + +L     +D+S N FS 
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 484 EVPSSFG----VTILMLS----LSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFL 535
             P+       +    +        N+   + P+ ++    L  L +  N++        
Sbjct: 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI- 585

Query: 536 SQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575
               ++ VL++++          +       +  L  +  
Sbjct: 586 --TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  209 bits (534), Expect = 1e-58
 Identities = 71/523 (13%), Positives = 148/523 (28%), Gaps = 103/523 (19%)

Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG----AIP 272
           + +     +SL    ++  L L+    SG +P+ IG L  + +LAL ++          P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 273 QSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTEL 332
           + I         +            +                              L + 
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD----------------------LIKD 164

Query: 333 SLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLP 391
            + S   + SI        + T +    N +     + +  L  L    + ++       
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 392 PPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVL 451
              +E+ N                        +  + + +      +P  +  +  + ++
Sbjct: 224 CEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 452 DLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKF-SGQLPQN 510
           +++ N              +    +                I ++ +  N   +  +  +
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEK-------------IQIIYIGYNNLKTFPVETS 325

Query: 511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDL 570
           L  +  L  L+   N L G+ PAF      L  LNL    +     +       ++ L  
Sbjct: 326 LQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384

Query: 571 SNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAI 630
           ++N L   IP+ F            +  +                               
Sbjct: 385 AHNKL-KYIPNIFDAKS--------VSVM------------------------------- 404

Query: 631 YSLMDLSNNQLSG-------EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLD 683
            S +D S N++          +  +      + S+NLS NQ+       F     L +++
Sbjct: 405 -SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 684 LSHNSLSG-------KIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
           L  N L+           + F     LTS+ L  NKL+    +
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  118 bits (299), Expect = 5e-28
 Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 16/230 (6%)

Query: 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG--- 553
           +   + +  Q   +L++   +  L L     +G  P  + QL+ L+VL L +   +    
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 554 -SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDL 612
                G+S   S +       +                     + + P+  S     +  
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 613 IVNWK--NSKRGLSSKSLAIYSL-----MDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQL 665
           + + +       ++  S A+  L       + N+    E              N  Y Q 
Sbjct: 183 LKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQ 237

Query: 666 QGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715
                  + NL+ L  +++ +     K+P     L ++  + ++ N+   
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 628 LAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHN 687
             I+  ++  N    G       +    K L++   Q       +  +   +  L L   
Sbjct: 36  KEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQ----PGVSLNSNGRVTGLSLEGF 91

Query: 688 SLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
             SG++P    +L +L  L L ++         
Sbjct: 92  GASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  278 bits (712), Expect = 4e-84
 Identities = 125/619 (20%), Positives = 209/619 (33%), Gaps = 96/619 (15%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
            S   LDLS+N ++     + F +   L  LDL    +         +L +L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG-IPLSLL 228
            I+       +GL +L++L+  +  +       IG+L  L +L++  N      +P    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITI----LALSNNALTGAIPQSIRNMTKLVTL 284
            L  LE LDL  N +      D+  L  + +    L LS N +    P + + + +L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 285 RLDSNVLSGEISTWLF-DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSI 343
            L +N  S  +       L G++   L   + +   N+    K  L  L   +       
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE----- 260

Query: 344 PLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVL 403
                 +  L +LD   +++       L+  N+ +  L    +          +     L
Sbjct: 261 ------EFRLAYLDYYLDDIIDL-FNCLT--NVSSFSLVSVTIER--VKDFSYNFGWQHL 309

Query: 404 VLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP 463
            L    F       +          L+  +  G    S  ++  L  LDLS N  S    
Sbjct: 310 ELVNCKFGQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS---- 360

Query: 464 AFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHLD 521
                            F G    S     ++  L LS N     +  N   L  L+HLD
Sbjct: 361 -----------------FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 402

Query: 522 LHDNNLTGEFPA-FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIP 580
              +NL           L +L  L++ +T    +     + L+SL++L ++ N+      
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 581 SSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQ 640
                              P+IF+    +  L                      DLS  Q
Sbjct: 463 -------------------PDIFTELRNLTFL----------------------DLSQCQ 481

Query: 641 LSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKL 700
           L    P++  SL  L+ LN+S+N         +  L  L+ LD S N +     Q     
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 541

Query: 701 -QQLTSLYLSNNKLSGRIP 718
              L  L L+ N  +    
Sbjct: 542 PSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  230 bits (589), Expect = 2e-66
 Identities = 114/516 (22%), Positives = 190/516 (36%), Gaps = 48/516 (9%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
             L  LDLS   +Q    G  + +L+ L+ L L  N +          L  L+ L     
Sbjct: 52  PELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL 228
            +    +  +  LK LK+L +  NLIQ  ++P    NLTNL  L L  NK        L 
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 229 QLRKLE----TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQ-SIRNMTKLVT 283
            L ++     +LDL  N ++   P     +  +  L L NN  +  + +  I+ +  L  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 284 LRLDSNVLSGEISTWLFD---LQGMKSLYLGGNKLKWND----NVSIVPKCM--LTELSL 334
            RL       E +   FD   L+G+ +L +   +L + D    ++  +  C+  ++  SL
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 335 RSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-------------------- 374
            S ++        S       L+L   +        L  L                    
Sbjct: 290 VSVTIERVKDF--SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347

Query: 375 NLGTVILSDNMLT--GSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSN 432
           +L  + LS N L+  G      F + +L  L LS N     +         +  L    +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHS 406

Query: 433 NFSGHVPKSI-SNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSF- 489
           N       S+  ++  L+ LD+S+      F   F   S +  + ++ N F         
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 490 --GVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLR 547
                +  L LS+ +     P   ++LS LQ L++  NN           L+SLQVL+  
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 548 NTALEGSITDGLSNL-TSLQILDLSNNNLLGKIPSS 582
              +  S    L +  +SL  L+L+ N+        
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  196 bits (499), Expect = 4e-54
 Identities = 107/497 (21%), Positives = 180/497 (36%), Gaps = 33/497 (6%)

Query: 99  TSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNL 158
            S+   PI  +++L  L++++N +Q       F+NLT L +LDL  N +     + L  L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 159 RYLEF----LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAE-IGNLTNLHKLS 213
             +      LDLS N +          +  L +L L +N     +    I  L  L    
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 214 LRQNKFSGGIPLSLL---QLRKLETLDLQRNSLS------GEIPEDIGTLANITILALSN 264
           L   +F     L       L  L  L ++   L+       +I +    L N++  +L +
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIV 324
             +      S         L L +       +  L  L+      L     K  +  S V
Sbjct: 292 VTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLKSLK-----RLTFTSNKGGNAFSEV 344

Query: 325 PKCMLTELSLR--SCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILS 382
               L  L L     S +G         T L +LDLS N +      +L    L  +   
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404

Query: 383 DNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHV-PK 440
            + L       +F S RNL  L +S  +            +S+ VL ++ N+F  +  P 
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 441 SISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLS 497
             + +  L  LDLS        P AF S S +  +++S N F       +    ++ +L 
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 524

Query: 498 LSENKFSGQLPQNLSNL-SLLQHLDLHDNNLTG--EFPAFLSQLSSLQVLNLRNTALEGS 554
            S N       Q L +  S L  L+L  N+     E  +FL  +   + L +    +E +
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 584

Query: 555 ITDGLSNLTSLQILDLS 571
                  +  +  L+++
Sbjct: 585 TPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  177 bits (450), Expect = 2e-47
 Identities = 90/413 (21%), Positives = 141/413 (34%), Gaps = 46/413 (11%)

Query: 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLT 387
              L L    +R        +  EL  LDLS  E++         L +L T+IL+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 388 GSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF-SGHVPKSISNIY 446
                      +L  LV    N +      IG   ++  L ++ N   S  +P+  SN+ 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 447 RLLVLDLSNNSFSGEFPA-----FGSDSLVGHVDISSNRFSGEVPSSFGVTIL-MLSLSE 500
            L  LDLS+N     +            L   +D+S N  +   P +F    L  L+L  
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

Query: 501 NKFSGQLPQN-LSNLSLLQHLDLHDNNLTGEF------PAFLSQLSSLQVLNLRNTALEG 553
           N  S  + +  +  L+ L+   L       E        + L  L +L +   R   L+ 
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 554 S---ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQ 610
               I D  + LT++    L +  +                           FS+    Q
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKD----------------------FSYNFGWQ 307

Query: 611 DLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQ--GN 668
            L +          +  L   SL  L+     G    S   L  L+ L+LS N L   G 
Sbjct: 308 HLELV-NCKFGQFPTLKLK--SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 669 IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP 721
              +      L+ LDLS N +   +   F  L+QL  L   ++ L      S 
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  119 bits (300), Expect = 4e-28
 Identities = 52/235 (22%), Positives = 79/235 (33%), Gaps = 50/235 (21%)

Query: 491 VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA 550
           V  +     E  F  ++P NL      ++LDL  N L             LQVL+L    
Sbjct: 7   VPNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 63

Query: 551 LEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQ 610
           ++        +L+ L  L L+ N +      +F  L  +                     
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL--------------------- 102

Query: 611 DLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG-NI 669
                                  +      L+      +G LK LK LN+++N +Q   +
Sbjct: 103 ---------------------QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 670 PSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT----SLYLSNNKLSGRIPES 720
           P  F NL  LE LDLS N +          L Q+     SL LS N ++   P +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  262 bits (672), Expect = 2e-78
 Identities = 120/590 (20%), Positives = 205/590 (34%), Gaps = 59/590 (10%)

Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
            + ++  LN  IP  L N    E L+ S N +    ++  + L NL  L L    I    
Sbjct: 17  YNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITI 259
                +   L  L L  N        +L   + L+ L   +  +S      +     +  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 260 LALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMK--SLYLGGNKLKW 317
           L L +N ++           KL  L   +N +       +  LQ     SL L GN +  
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA- 192

Query: 318 NDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT-----ELTFLDLSENELEGTYPQWLS 372
                     +   L+         I   L   T       TF D+ + ++     + L 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 373 ELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSN 432
           E+++ ++ L  +               L  L L+  + S ELP  +   +++  L+LS+N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN 311

Query: 433 NFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVG--HVDISSNRFSGEVPSSFG 490
            F      S SN   L  L +  N+   E      ++L     +D+S +        +  
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371

Query: 491 VTIL----MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG-EFPAFLSQLSSLQVLN 545
           +  L     L+LS N+      +       L+ LDL    L   +  +    L  L+VLN
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431

Query: 546 LRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSF 605
           L ++ L+ S       L +LQ L+L  N+          +LQ        L  L      
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT-------LGRL------ 478

Query: 606 PVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQL 665
                                      ++ LS   LS     +  SLK +  ++LS+N+L
Sbjct: 479 --------------------------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512

Query: 666 QGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715
             +      +L+ +  L+L+ N +S  +P     L Q  ++ L  N L  
Sbjct: 513 TSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  209 bits (535), Expect = 4e-59
 Identities = 95/546 (17%), Positives = 159/546 (29%), Gaps = 114/546 (20%)

Query: 182 LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN 241
             + + L    N++          L NL  L L + +       +     +L+TL L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 242 SLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD 301
            L       +     +  L      ++      + N   L +L L SN +S       F 
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 302 LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSEN 361
            + +K L    N + +     +      T LSL                      +L+ N
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL----------------------NLNGN 189

Query: 362 ELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFES--RNLSVLVLSRNNFSGELPETIG 419
           ++ G  P         ++          +   L  S  ++L +      +     P    
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 420 --QSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDIS 477
                SV  + L  + F      +      L  LDL+    S                  
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS------------------ 291

Query: 478 SNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQ 537
                                       +LP  L  LS L+ L L  N          S 
Sbjct: 292 ----------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 538 LSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSIL 596
             SL  L+++       +  G L NL +L+ LDLS++++          L+        L
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI-ETSDCCNLQLRN-------L 375

Query: 597 PTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLK 656
             L  +                                +LS N+       +      L+
Sbjct: 376 SHLQSL--------------------------------NLSYNEPLSLKTEAFKECPQLE 403

Query: 657 SLNLSYNQLQGNIP-STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715
            L+L++ +L+     S F NL +L+ L+LSH+ L     Q F  L  L  L L  N    
Sbjct: 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 716 RIPESP 721
              +  
Sbjct: 464 GNIQKT 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  180 bits (460), Expect = 8e-49
 Identities = 104/491 (21%), Positives = 177/491 (36%), Gaps = 43/491 (8%)

Query: 99  TSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLT--YLDLKDNNLNGSIPSQLF 156
           +S+ L   F    L  LD   N++         ++L + T   L+L  N++   I    F
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDI-AGIEPGAF 199

Query: 157 NLRYLEFLDLSANAIEGKLSSRVAG--LKNLKQLILDDNLIQGQIPAEIGNLTNLH--KL 212
           +    + L+         +   +    +++L     +D   +   PA    L  +    +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 213 SLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP 272
           +L+++ F      +      L+ LDL    LS E+P  +  L+ +  L LS N       
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 273 QSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTE 331
            S  N   L  L +  N    E+ T    +L+ ++ L L  + +                
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI---------------- 362

Query: 332 LSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSL 390
                        L L   + L  L+LS NE      +   E   L  + L+   L    
Sbjct: 363 ------ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416

Query: 391 PPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG---HVPKSISNIY 446
               F++   L VL LS +       +      ++  L L  N+F         S+  + 
Sbjct: 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG 476

Query: 447 RLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSF-GVTILMLSLSENKFS 504
           RL +L LS    S     AF S  ++ HVD+S NR +     +   +  + L+L+ N  S
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHIS 536

Query: 505 GQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTS 564
             LP  L  LS  + ++L  N L        S +  L+        LE +      N   
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKENMQKLEDTEDTLCENPPL 592

Query: 565 LQILDLSNNNL 575
           L+ + LS+  L
Sbjct: 593 LRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  111 bits (280), Expect = 1e-25
 Identities = 40/257 (15%), Positives = 72/257 (28%), Gaps = 30/257 (11%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
             +  +   + E+P +   +   L  S N          S L  L  LDL    +     
Sbjct: 16  TYNCENLGLN-EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDT 592
                   L  L L    L       LS   +L+ L      +         N +     
Sbjct: 75  DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK----- 129

Query: 593 PSILPTLPEIFSFPVEIQDLIVNW---KNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL 649
                           ++ L +      + K      +  +  L D  NN +       +
Sbjct: 130 ---------------TLESLYLGSNHISSIKLPKGFPTEKLKVL-DFQNNAIHYLSKEDM 173

Query: 650 GSLKGLK--SLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQ--TFAKLQQLTS 705
            SL+     SLNL+ N + G I     +  + ++L+         I +    + +Q L  
Sbjct: 174 SSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 706 LYLSNNKLSGRIPESPQ 722
               +       P   +
Sbjct: 233 GTFEDMDDEDISPAVFE 249

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  102 bits (255), Expect = 1e-22
 Identities = 35/203 (17%), Positives = 56/203 (27%), Gaps = 45/203 (22%)

Query: 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG 577
           +  +  +  L  E P  L   +S + L      L        S L +L  LDL+   +  
Sbjct: 15  KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLS 637
               +F +                       +  L                       L+
Sbjct: 72  IHEDTFQSQH--------------------RLDTL----------------------VLT 89

Query: 638 NNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTF 697
            N L     ++L   K LK L      +         N + LE+L L  N +S       
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 698 AKLQQLTSLYLSNNKLSGRIPES 720
              ++L  L   NN +     E 
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKED 172

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  246 bits (629), Expect = 3e-72
 Identities = 121/613 (19%), Positives = 195/613 (31%), Gaps = 94/613 (15%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
            S   +DLS+N ++  +    F+N + L +LDL    +          L +L  L L+ N
Sbjct: 32  SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLL 228
            I+       +GL +L+ L+  +  +       IG L  L KL++  N      +P    
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITI----LALSNNALTGAIPQSIRNMTKLVTL 284
            L  L  +DL  N +      D+  L         L +S N +     Q+ + + KL  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHEL 209

Query: 285 RLDSNVLSGEISTWLF-DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSI 343
            L  N  S  I      +L G+    L   + K   N+ I    ++  L           
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL----------- 258

Query: 344 PLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSV 402
                    +    L+              L N+  + L+   +       + +      
Sbjct: 259 -----CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQS 311

Query: 403 LVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEF 462
           L + R          +     +  L L+ N  S  +      +  L  LDLS N+ S   
Sbjct: 312 LSIIRCQLKQFPTLDL---PFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSF-- 364

Query: 463 PAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDL 522
                             +S    +S    +  L LS N     +  N   L  LQHLD 
Sbjct: 365 -------------SGCCSYSDLGTNS----LRHLDLSFNGAII-MSANFMGLEELQHLDF 406

Query: 523 HDNNLTGEFPA-FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPS 581
             + L           L  L  L++  T  +         LTSL  L ++ N+       
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL- 465

Query: 582 SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQL 641
                               +F+    +  L                      DLS  QL
Sbjct: 466 ------------------SNVFANTTNLTFL----------------------DLSKCQL 485

Query: 642 SGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ 701
                    +L  L+ LN+S+N L     S +  L  L TLD S N +           +
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 702 QLTSLYLSNNKLS 714
            L    L+NN ++
Sbjct: 546 SLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  234 bits (599), Expect = 5e-68
 Identities = 110/602 (18%), Positives = 182/602 (30%), Gaps = 94/602 (15%)

Query: 138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG 197
                 D  L+  +P  +      + +DLS N ++   S   +    L+ L L    I+ 
Sbjct: 14  ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI 257
                   L +L  L L  N      P S   L  LE L      L+      IG L  +
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 258 TILALSNNALTGA-IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMK----SLYLGG 312
             L +++N +    +P    N+T LV + L  N +       L  L+       SL +  
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 313 NKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYP---- 368
           N +                           I        +L  L L  N           
Sbjct: 191 NPID-------------------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCL 225

Query: 369 ---QWLSELNLGTVILSDNMLTGSLPPPLFE---SRNLSVLVLSRNNFSGELPETIGQST 422
                L    L      D        P + E      +    L+  N   +         
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFS 482
           +V  + L+  +      + +   ++   L +       +FP      L   + ++ N+ S
Sbjct: 286 NVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPTLDLPFLK-SLTLTMNKGS 341

Query: 483 GEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSL--LQHLDLHDNNLTGEFPAFLSQLSS 540
                    ++  L LS N  S     + S+L    L+HLDL  N       A    L  
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE 400

Query: 541 LQVLNLRNTALEGSI-TDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTL 599
           LQ L+ +++ L+         +L  L  LD+S  N        F  L             
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS----------- 449

Query: 600 PEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSS-LGSLKGLKSL 658
                    +  L                       ++ N       S+   +   L  L
Sbjct: 450 ---------LNTL----------------------KMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 659 NLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP 718
           +LS  QL+      F  L  L+ L++SHN+L       + +L  L++L  S N++     
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 719 ES 720
             
Sbjct: 539 IL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  155 bits (393), Expect = 6e-40
 Identities = 84/496 (16%), Positives = 144/496 (29%), Gaps = 100/496 (20%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
           T       LS ++P+DI +  +   + LS N L      S  N ++L  L L    +   
Sbjct: 15  TYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 295 ISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELT 354
                  L  + +L L GN +                        +   P   S  T L 
Sbjct: 72  EDKAWHGLHHLSNLILTGNPI------------------------QSFSPGSFSGLTSLE 107

Query: 355 FLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSG 412
            L   E +L       + +L  L  + ++ N +     P  F +  NL  + LS N    
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 413 ELPETIGQSTSVMVLMLS---SNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDS 469
                +        + LS   S N    +        +L  L L  N  S         +
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227

Query: 470 LVG--HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNL 527
           L G     +    F  E                  F   + + L ++++     L   N 
Sbjct: 228 LAGLHVHRLILGEFKDERNLEI-------------FEPSIMEGLCDVTID-EFRLTYTND 273

Query: 528 TGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQ 587
             +       L+++  ++L   ++     + +      Q L +    L          L+
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331

Query: 588 GMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPS 647
                                                         + L+ N+ S  I  
Sbjct: 332 ---------------------------------------------SLTLTMNKGS--ISF 344

Query: 648 SLGSLKGLKSLNLSYNQLQGNIPSTFGNLEI--LETLDLSHNSLSGKIPQTFAKLQQLTS 705
              +L  L  L+LS N L  +   ++ +L    L  LDLS N     +   F  L++L  
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403

Query: 706 LYLSNNKLSGRIPESP 721
           L   ++ L      S 
Sbjct: 404 LDFQHSTLKRVTEFSA 419

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  233 bits (596), Expect = 1e-70
 Identities = 88/341 (25%), Positives = 133/341 (39%), Gaps = 72/341 (21%)

Query: 405 LSRNNFSGELPETIGQSTSVMVLMLSSNNFSG--HVPKSISNIYRLLVLDLSNNSFSGEF 462
                + G L +T  Q+  V  L LS  N      +P S++N+  L  L +         
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI------ 86

Query: 463 PAFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHL 520
                           N   G +P +      +  L ++    SG +P  LS +  L  L
Sbjct: 87  ----------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 521 DLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSL-QILDLSNNNLLGKI 579
           D   N L+G  P  +S L +L  +      + G+I D   + + L   + +S N L GKI
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 580 PSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNN 639
           P +F NL                                        +L   + +DLS N
Sbjct: 191 PPTFANL----------------------------------------NL---AFVDLSRN 207

Query: 640 QLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAK 699
            L G+     GS K  + ++L+ N L  ++    G  + L  LDL +N + G +PQ   +
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 700 LQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCG 740
           L+ L SL +S N L G IP+   + R  D   YANN  LCG
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQR-FDVSAYANNKCLCG 306

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  207 bits (528), Expect = 6e-61
 Identities = 87/374 (23%), Positives = 138/374 (36%), Gaps = 71/374 (18%)

Query: 25  CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCR--WEMVRCRSRGPSQE 82
           C    K ALL+ K  +                L +W  ++DCC   W  V C +   +  
Sbjct: 3   CNPQDKQALLQIKKDLGNP-----------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYR 51

Query: 83  VTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVP-GTGFANLTRLTYLD 141
           V                               LDLS  ++    P  +  ANL  L +L 
Sbjct: 52  VNN-----------------------------LDLSGLNLPKPYPIPSSLANLPYLNFLY 82

Query: 142 L-KDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIP 200
           +   NNL G IP  +  L  L +L ++   + G +   ++ +K L  L    N + G +P
Sbjct: 83  IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

Query: 201 AEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLET-LDLQRNSLSGEIPEDIGTLANITI 259
             I +L NL  ++   N+ SG IP S     KL T + + RN L+G+IP     L N+  
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201

Query: 260 LALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWND 319
           + LS N L G       +      + L  N L+ ++   +   + +  L L  N++    
Sbjct: 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI---- 256

Query: 320 NVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTV 379
                                G++P  L+    L  L++S N L G  PQ  +       
Sbjct: 257 --------------------YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

Query: 380 ILSDNMLTGSLPPP 393
             ++N      P P
Sbjct: 297 AYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  192 bits (491), Expect = 1e-55
 Identities = 77/265 (29%), Positives = 124/265 (46%), Gaps = 9/265 (3%)

Query: 330 TELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTY--PQWLSEL-NLGTVILSD-NM 385
                 + +  G +    +    +  LDLS   L   Y  P  L+ L  L  + +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 386 LTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNI 445
           L G +PP + +   L  L ++  N SG +P+ + Q  +++ L  S N  SG +P SIS++
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 446 YRLLVLDLSNNSFSGEFPA-FGS-DSLVGHVDISSNRFSGEVPSSFG-VTILMLSLSENK 502
             L+ +    N  SG  P  +GS   L   + IS NR +G++P +F  + +  + LS N 
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 503 FSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNL 562
             G       +    Q + L  N+L  +    +    +L  L+LRN  + G++  GL+ L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 563 TSLQILDLSNNNLLGKIPSSFGNLQ 587
             L  L++S NNL G+IP   GNLQ
Sbjct: 268 KFLHSLNVSFNNLCGEIPQG-GNLQ 291

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  191 bits (488), Expect = 3e-55
 Identities = 82/324 (25%), Positives = 122/324 (37%), Gaps = 55/324 (16%)

Query: 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGS--IPSQLFNLRYLEFLDLS-ANA 170
           T D    +  G +  T      R+  LDL   NL     IPS L NL YL FL +   N 
Sbjct: 30  TTDCCNRTWLGVLCDT-DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
           + G +   +A L  L  L +    + G IP  +  +  L  L    N  SG +P S+  L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLAN-ITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289
             L  +    N +SG IP+  G+ +   T + +S N LTG IP +  N+  L  + L  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 290 VLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLST 349
           +L G+ S      +  + ++L  N L                           +   +  
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSL------------------------AFDLG-KVGL 242

Query: 350 QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNN 409
              L  LDL                        +N + G+LP  L + + L  L +S NN
Sbjct: 243 SKNLNGLDLR-----------------------NNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 410 FSGELPETIGQSTSVMVLMLSSNN 433
             GE+P   G      V   ++N 
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  178 bits (454), Expect = 1e-50
 Identities = 81/353 (22%), Positives = 123/353 (34%), Gaps = 79/353 (22%)

Query: 234 ETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG--AIPQSIRNMTKLVTLRL-DSNV 290
            T D    +  G + +       +  L LS   L     IP S+ N+  L  L +   N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350
           L G I   +  L  +  LY+    +                         G+IP +LS  
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNV------------------------SGAIPDFLSQI 124

Query: 351 TELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNF 410
             L  LD                        S N L+G+LPP +    NL  +    N  
Sbjct: 125 KTLVTLD-----------------------FSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 411 SGELPETIGQSTS-VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDS 469
           SG +P++ G  +     + +S N  +G +P + +N+  L  +DLS               
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR-------------- 206

Query: 470 LVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNL 527
                    N   G+    FG       + L++N  +  L + +     L  LDL +N +
Sbjct: 207 ---------NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256

Query: 528 TGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIP 580
            G  P  L+QL  L  LN+    L G I  G  NL    +   +NN  L   P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  139 bits (352), Expect = 1e-36
 Identities = 52/223 (23%), Positives = 86/223 (38%), Gaps = 50/223 (22%)

Query: 506 QLPQNLSNLSLLQ----HLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS--ITDGL 559
           Q+ ++L N + L       D  +    G      +Q   +  L+L    L     I   L
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 560 SNLTSLQILDLSNNNLL-GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKN 618
           +NL  L  L +   N L G IP +   L  +                             
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQL----------------------------- 103

Query: 619 SKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEI 678
                          + +++  +SG IP  L  +K L +L+ SYN L G +P +  +L  
Sbjct: 104 -------------HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 679 LETLDLSHNSLSGKIPQTFAKLQQL-TSLYLSNNKLSGRIPES 720
           L  +    N +SG IP ++    +L TS+ +S N+L+G+IP +
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  238 bits (608), Expect = 2e-67
 Identities = 104/703 (14%), Positives = 187/703 (26%), Gaps = 131/703 (18%)

Query: 32  ALLEFKSLVLGD-LADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNN 90
           AL      + G      S           WN + +   W          +  VTGL L  
Sbjct: 273 ALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAG 332

Query: 91  LFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGS 150
                 +  +     I ++  L  L    +S        G   LT     + K       
Sbjct: 333 FGAKGRVPDA-----IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 151 IPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG------QIPAEIG 204
               L   + L   DL  +AI      +   +K   ++ L D  I         I   I 
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMK--PIKKDSRISLKDTQIGNLTNRITFISKAIQ 445

Query: 205 NLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN 264
            LT L  +    + F+             E  +                L ++T + L N
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVDW-----EDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIV 324
                 +P  + ++ +L +L +  N                                   
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQ---------------------------- 532

Query: 325 PKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEG-TYPQWLSEL-NLGTVILS 382
                        +    +     T  ++    +  N LE       L ++  LG +   
Sbjct: 533 -----------LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 383 DNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM-VLMLSSNNFSGHVPK- 440
            N +          +  L+ L L  N    E+PE     T  +  L  S N     +P  
Sbjct: 582 HNKVRH--LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNI 637

Query: 441 -SISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLS 499
            +  ++Y +  +D S N    E                       +    G+    ++LS
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCS----------------MDDYKGINASTVTLS 681

Query: 500 ENKFSGQLPQNLSNLSLLQHLDLHDNNLT-------GEFPAFLSQLSSLQVLNLRNTALE 552
            N+      +  +  S +  + L +N +T                   L  ++LR   L 
Sbjct: 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT 741

Query: 553 G-SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQD 611
             S     + L  L  +D+S N      P+   N   +                      
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQL---------------------- 778

Query: 612 LIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS 671
                         K+  I    D   N++  + P+ + +   L  L +  N ++  +  
Sbjct: 779 --------------KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823

Query: 672 TFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
                  L  LD++ N        +     +     L  +K  
Sbjct: 824 KL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  222 bits (568), Expect = 7e-62
 Identities = 89/607 (14%), Positives = 191/607 (31%), Gaps = 89/607 (14%)

Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
           LD K+        +   +     F +   +    +    +     +  L L     +G++
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339

Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT-LANIT 258
           P  IG LT L  LS   +  +    L   +    +  + +++ +     +        + 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 259 ILALSNNALT-----GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN 313
           +  L  +A+        I +  R   K   +   +N ++  IS  +  L  ++ +Y   +
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS 458

Query: 314 KLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSE 373
                            + +        +  L  S   +LT ++L         P +L +
Sbjct: 459 PFT-----YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 374 L-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSN 432
           L  L ++ ++ N                             L +       + +  +  N
Sbjct: 514 LPELQSLNIACNRGIS---------------AAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 433 NFSG-HVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGV 491
           N        S+  + +L +LD  +N       AFG++  +  + +  N+   E+P  F  
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCA 616

Query: 492 ---TILMLSLSENKFSGQLPQ--NLSNLSLLQHLDLHDNNLTGEFPAFLS-----QLSSL 541
               +  L  S NK    +P   N  ++ ++  +D   N +  E           +  + 
Sbjct: 617 FTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675

Query: 542 QVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE 601
             + L    ++   T+  +  + +  + LSNN +     +S     G      +L T+  
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI-- 733

Query: 602 IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL--GSLKGLKSLN 659
                                            DL  N+L+  +       +L  L +++
Sbjct: 734 ---------------------------------DLRFNKLT-SLSDDFRATTLPYLSNMD 759

Query: 660 LSYNQLQGNIPSTFGNLEILETLDLSH------NSLSGKIPQTFAKLQQLTSLYLSNNKL 713
           +SYN      P+   N   L+   + H      N +  + P        L  L + +N +
Sbjct: 760 VSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 714 SGRIPES 720
              + E 
Sbjct: 819 RK-VDEK 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  157 bits (399), Expect = 5e-40
 Identities = 64/450 (14%), Positives = 134/450 (29%), Gaps = 70/450 (15%)

Query: 294 EISTWLFDLQGMKSLYLGGNKLKWNDNVSIV---PKCMLTELSLRSCSVRGSIPLWLSTQ 350
           E + ++ D + +K+++   +   W      +      +    +           + L   
Sbjct: 263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN 322

Query: 351 TELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNN 409
             +T L L+    +G  P  + +L  L  +    +  T S      E     +    ++ 
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 410 FSGELPETIG------QSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP 463
                 +           + ++   ++ N     + K      +   +    N  +    
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 464 AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLH 523
           A    + +  +  +++ F+ +  +         +    K       + SNL  L  ++L+
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDW---EDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 524 DNNLTGEFPAFLSQLSSLQVLNLRNTALEG---------SITDGLSNLTSLQILDLSNNN 574
           +     + P FL  L  LQ LN+                 + D       +QI  +  NN
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 575 LLG-KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSL 633
           L      +S   +  +                                           L
Sbjct: 560 LEEFPASASLQKMVKL------------------------------------------GL 577

Query: 634 MDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI 693
           +D  +N++      + G+   L  L L YNQ++          + +E L  SHN L   I
Sbjct: 578 LDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-I 634

Query: 694 PQTFA--KLQQLTSLYLSNNKLSGRIPESP 721
           P  F    +  + S+  S NK+        
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  113 bits (284), Expect = 5e-26
 Identities = 36/241 (14%), Positives = 84/241 (34%), Gaps = 16/241 (6%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI 555
            +   + +  Q   +L N   +  L L      G  P  + QL+ L+VL+    +   S 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 556 TDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSI----LPTLPEIFSFPVEIQD 611
                   +  + +   + +       F +    ++   +    +   PE+     + + 
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423

Query: 612 LIVNWK--NSKRGLSSKSLAIYSL-----MDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQ 664
            + + +  N    ++  S AI  L     +  +N+  + +  +        +  N  Y +
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAK 478

Query: 665 LQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMD 724
              N   ++ NL+ L  ++L +     ++P     L +L SL ++ N+            
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 725 R 725
           R
Sbjct: 539 R 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  107 bits (268), Expect = 4e-24
 Identities = 33/231 (14%), Positives = 69/231 (29%), Gaps = 24/231 (10%)

Query: 106 IFRIRSLMTLDLSYNSMQGEVPGTG----FANLTRLTYLDLKDNNLNGSIPSQLFNLRYL 161
              +  + ++D SYN +  E                + + L  N +             +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699

Query: 162 EFLDLSANAIE-------GKLSSRVAGLKNLKQLILDDNLIQGQIPAEI--GNLTNLHKL 212
             + LS N +                    L  + L  N +   +  +     L  L  +
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758

Query: 213 SLRQNKFSGGIPLSLLQLRKLETLDLQR------NSLSGEIPEDIGTLANITILALSNNA 266
            +  N FS   P   L   +L+   ++       N +  + P  I T  ++  L + +N 
Sbjct: 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 267 LTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKW 317
           +   + + +    +L  L +  N       T +          L  +K + 
Sbjct: 818 IRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  187 bits (477), Expect = 2e-51
 Identities = 116/613 (18%), Positives = 201/613 (32%), Gaps = 117/613 (19%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
            S   LDLS+N ++  +    F +   L  LDL    +         +L +L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF-SGGIPLSLL 228
            I+       +GL +L++L+  +  +       IG+L  L +L++  N   S  +P    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITI----LALSNNALTGAIPQSIRNMTKLVTL 284
            L  LE LDL  N +      D+  L  + +    L LS N +   I        +L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKL 205

Query: 285 RLDSNVLSGEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSI 343
            L +N  S  +       L G++   L   + +   N+    K  L  L   +       
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE----- 260

Query: 344 PLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVL 403
                 +  L +LD   +++   +       N+ +  L    +          +     L
Sbjct: 261 ------EFRLAYLDYYLDDIIDLFNC---LTNVSSFSLVSVTIERV--KDFSYNFGWQHL 309

Query: 404 VLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP 463
            L    F  + P    +  S+  L  +SN        S  ++  L  LDLS N  S    
Sbjct: 310 ELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLS---- 360

Query: 464 AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLH 523
                                                  F G   Q+    + L++LDL 
Sbjct: 361 ---------------------------------------FKGCCSQSDFGTTSLKYLDLS 381

Query: 524 DNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSS 582
            N +     +    L  L+ L+ +++ L+         +L +L  LD+S+ +        
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 583 FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS 642
           F  L                      ++ L                       ++ N   
Sbjct: 441 FNGLS--------------------SLEVL----------------------KMAGNSFQ 458

Query: 643 GEIPS-SLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ 701
                     L+ L  L+LS  QL+   P+ F +L  L+ L+++ N L       F +L 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 702 QLTSLYLSNNKLS 714
            L  ++L  N   
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  160 bits (406), Expect = 7e-42
 Identities = 93/530 (17%), Positives = 156/530 (29%), Gaps = 93/530 (17%)

Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI 257
           +IP  +    +   L L  N        S     +L+ LDL R  +         +L+++
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKW 317
           + L L+ N +      +   ++ L  L      L+   +  +  L+ +K L +  N ++ 
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 318 NDNVSIVPKCM-LTELSLRSCSVRGSIPLWLSTQTELTF----LDLSENELEGTYPQWLS 372
                       L  L L S  ++      L    ++      LDLS N +    P    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 373 ELNLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSS 431
           E+ L  + L +N  + ++     +    L V  L    F               +     
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----------EGNLEKFDK 248

Query: 432 NNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGV 491
           +   G    +I    RL  LD   +     F    +   V    + S         S+  
Sbjct: 249 SALEGLCNLTIEEF-RLAYLDYYLDDIIDLFNCLTN---VSSFSLVSVTIERVKDFSYNF 304

Query: 492 TILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTAL 551
               L L   KF       L +L   + L    N     F                    
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSL---KRLTFTSNKGGNAFS------------------- 342

Query: 552 EGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQD 611
                    +L SL+ LDLS N L                  S      +       ++ 
Sbjct: 343 -------EVDLPSLEFLDLSRNGL------------------SFKGCCSQSDFGTTSLKY 377

Query: 612 LIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP- 670
           L                      DLS N +   + S+   L+ L+ L+  ++ L+     
Sbjct: 378 L----------------------DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 671 STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
           S F +L  L  LD+SH          F  L  L  L ++ N         
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (337), Expect = 5e-33
 Identities = 92/414 (22%), Positives = 150/414 (36%), Gaps = 48/414 (11%)

Query: 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLT 387
              L L    +R        +  EL  LDLS  E++         L +L T+IL+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 388 GSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF-SGHVPKSISNI 445
            SL    F    +L  LV    N +      IG   ++  L ++ N   S  +P+  SN+
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 446 YRLLVLDLSNNSFS----GEFPAFGS-DSLVGHVDISSNRFSGEVPSSF-GVTILMLSLS 499
             L  LDLS+N        +         L   +D+S N  +   P +F  + +  L+L 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 500 ENKFSGQLPQN-LSNLSLLQHLDL------HDNNLTGEFPAFLSQLSSLQVLNLRNTALE 552
            N  S  + +  +  L+ L+   L      ++ NL     + L  L +L +   R   L+
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 553 GS---ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEI 609
                I D  + LT++    L +  +      S+               L          
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG---------WQHL---------- 309

Query: 610 QDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQ--G 667
            +L+         L  KSL     +  ++N+       S   L  L+ L+LS N L   G
Sbjct: 310 -ELVNCKFGQFPTLKLKSL---KRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 668 NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP 721
               +      L+ LDLS N +   +   F  L+QL  L   ++ L      S 
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 3/141 (2%)

Query: 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLD 165
              +  L  LD  +++++     + F +L  L YLD+   +   +       L  LE L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 166 LSANAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGI 223
           ++ N+ +      +   L+NL  L L    ++ Q+      +L++L  L++  N+     
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 224 PLSLLQLRKLETLDLQRNSLS 244
                +L  L+ + L  N   
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWD 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  191 bits (486), Expect = 4e-51
 Identities = 110/632 (17%), Positives = 195/632 (30%), Gaps = 103/632 (16%)

Query: 131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLI 189
              L     L L  N +     S    L  L+ L+L +      +       L NL+ L 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 190 LDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGI--PLSLLQLRKLETLDLQRNSLSG- 245
           L  + I   +  +    L +L +L L     S  +        L+ L  LDL +N +   
Sbjct: 80  LGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 246 EIPEDIGTLANITILALSNNALTGAIPQSIRN--MTKLVTLRLDSNVLSGEIS-TWLFDL 302
            +    G L ++  +  S+N +       +       L    L +N L   +S  W   +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 303 QGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENE 362
              +++ L    +  N     +       +S        S    L     +       + 
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAIS-------KSQAFSLILAHHIMGAGFGFHN 251

Query: 363 LEGTYP---QWLSELNLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETI 418
           ++         L+  ++  + LS   +  SL   +FE+ ++L VL L+ N  +    E  
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 419 GQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISS 478
               ++ VL LS N        +   + ++  +DL  N  +                I  
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA---------------IIQD 355

Query: 479 NRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQL 538
             F   +       +  L L +N  +      +  +  +  + L  N L           
Sbjct: 356 QTFKF-LEK-----LQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVT----LPKIN 400

Query: 539 SSLQVLNLRNTALEG-SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILP 597
            +  +++L    LE   I   L  +  LQIL L+ N                        
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-------------- 446

Query: 598 TLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL-----GSL 652
                 S    ++ L                       L  N L     + L       L
Sbjct: 447 -----PSENPSLEQL----------------------FLGENMLQLAWETELCWDVFEGL 479

Query: 653 KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNK 712
             L+ L L++N L    P  F +L  L  L L+ N L+            L  L +S N+
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQ 537

Query: 713 LSGRIPESPQMDRQIDPVIYANNSGLCGMQIQ 744
           L    P+       +D     +N  +C  ++ 
Sbjct: 538 LLAPNPDVFVSLSVLD---ITHNKFICECELS 566

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  180 bits (457), Expect = 2e-47
 Identities = 122/621 (19%), Positives = 205/621 (33%), Gaps = 105/621 (16%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
             L  L+L        +    F NL  L  LDL  + +   +    F  L +L  L L  
Sbjct: 48  EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYF 106

Query: 169 NAIEGKLSSRVA--GLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIPL 225
             +   +        LK L +L L  N I+   +    G L +L  +    N+       
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 226 SL--LQLRKLETLDLQRNSLSGEIPEDIGTLAN-ITILALSNNALTGAIPQSIRNMTKLV 282
            L  LQ + L    L  NSL   +  D G   N    + L    ++G       N   + 
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG-------NGWTVD 219

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM--LTELSLRSCSVR 340
                SN +S   +  L     +     G + +K  D  +        +  L L    V 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-R 398
                   T  +L  L+L+ N++     +    L NL  + LS N+L   L    F    
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLP 338

Query: 399 NLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSF 458
            ++ + L +N+ +    +T      +  L L  N  +     +I  I  +  + LS N  
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393

Query: 459 SGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSG-QLPQNLSNLSLL 517
                            +     +  +          + LSEN+     +   L  +  L
Sbjct: 394 V---------------TLPKINLTANL----------IHLSENRLENLDILYFLLRVPHL 428

Query: 518 QHLDLHDNNLTG-EFPAFLSQLSSLQVLNLRNTALEGSITDGL-----SNLTSLQILDLS 571
           Q L L+ N  +        S+  SL+ L L    L+ +    L       L+ LQ+L L+
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIY 631
           +N L    P  F +L  +                                          
Sbjct: 489 HNYLNSLPPGVFSHLTAL------------------------------------------ 506

Query: 632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
             + L++N+L+    + L     L+ L++S NQL    P  F +   L  LD++HN    
Sbjct: 507 RGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFIC 561

Query: 692 KIP-QTFAKLQQLTSLYLSNN 711
           +    TF      T++ ++  
Sbjct: 562 ECELSTFINWLNHTNVTIAGP 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  131 bits (332), Expect = 9e-32
 Identities = 75/352 (21%), Positives = 127/352 (36%), Gaps = 23/352 (6%)

Query: 378 TVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH 437
                   LT  +P  L        L+LS N        +      + +L L S      
Sbjct: 8   IAFYRFCNLT-QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 438 V-PKSISNIYRLLVLDLSNNSFSG-EFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL- 494
           +  ++  N+  L +LDL ++        AF     +  + +     S  V        L 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123

Query: 495 ---MLSLSENKFSG-QLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLS--SLQVLNLRN 548
               L LS+N+     L  +   L+ L+ +D   N +       L  L   +L   +L  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 549 TALEGSITDGLSNL------TSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEI 602
            +L   ++              L+ILD+S N     I  +F N        S L     I
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS-LILAHHI 242

Query: 603 FSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSY 662
                   ++    +N+  GL+  S+     +DLS+  +         +LK LK LNL+Y
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSV---RHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           N++       F  L+ L+ L+LS+N L       F  L ++  + L  N ++
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 9e-29
 Identities = 101/468 (21%), Positives = 166/468 (35%), Gaps = 43/468 (9%)

Query: 77  RGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGT------- 129
           +G +     L  N+L+   S+     + P FR   L  LD+S N    ++ G        
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNP-FRNMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 130 ----GFANLTRLTYLDLKDNNLNGSIPSQLFNLR--YLEFLDLSANAIEGKLSSRVAGLK 183
                      +       +N+     +    L    +  LDLS   +    S     LK
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL 243
           +LK L L  N I          L NL  L+L  N        +   L K+  +DLQ+N +
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 244 SGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQ 303
           +    +    L  +  L L +NALT     +I  +  +  + L  N L   +        
Sbjct: 351 AIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKINLTAN 404

Query: 304 GMKSLYLGGNKLKWNDNVSIVPKCM-LTELSLRSCSVRG-SIPLWLSTQTELTFLDLSEN 361
               ++L  N+L+  D +  + +   L  L L        S     S    L  L L EN
Sbjct: 405 ---LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 362 ELEGTYPQWLSEL------NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGEL 414
            L+  +   L         +L  + L+ N L  SLPP +F     L  L L+ N  +  L
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLT-VL 519

Query: 415 PETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFS-----GEFPAFGSDS 469
                   ++ +L +S N      P    +   L VLD+++N F        F  + + +
Sbjct: 520 SHND-LPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFICECELSTFINWLNHT 575

Query: 470 LVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLL 517
            V      ++ +     S  GV++  LS         L     +L ++
Sbjct: 576 NVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIV 623

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  175 bits (445), Expect = 4e-47
 Identities = 103/609 (16%), Positives = 188/609 (30%), Gaps = 130/609 (21%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
            ++ +LDLS+N +   +          L  L LK + +N +I    F +L  LE LDLS 
Sbjct: 26  AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIP-LS 226
           N +    SS    L +LK L L  N  Q   + +   NLTNL  L +   +    I  + 
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID 143

Query: 227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRL 286
              L  L  L+++  SL     + + ++ +I  L L  +     +      ++ +  L L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203

Query: 287 DSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346
               L+    + L   +    +     +               + L+  S +    +  +
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRG--------------SVLTDESFNELLKLLRY 249

Query: 347 LSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLS 406
           +   +E+ F D + N L                  + +           E+  +  L + 
Sbjct: 250 ILELSEVEFDDCTLNGLG---------------DFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 407 RNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFG 466
           +     +L         V  + + ++           ++  L  LDLS N          
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVE------ 348

Query: 467 SDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN 526
                                          L  +   G  P        LQ L L  N+
Sbjct: 349 -----------------------------EYLKNSACKGAWPS-------LQTLVLSQNH 372

Query: 527 LT--GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG 584
           L    +    L  L +L  L++        + D       ++ L+LS+  +         
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

Query: 585 NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE 644
            L+                                             ++D+SNN L   
Sbjct: 432 TLE---------------------------------------------VLDVSNNNLD-S 445

Query: 645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT 704
               L  L+    L +S N+L+    ++     +L  + +S N L       F +L  L 
Sbjct: 446 FSLFLPRLQ---ELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 705 SLYLSNNKL 713
            ++L  N  
Sbjct: 501 KIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  172 bits (437), Expect = 4e-46
 Identities = 102/584 (17%), Positives = 188/584 (32%), Gaps = 85/584 (14%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
           +    D    S    +P    A +     LDL  N +       L     L+ L L ++ 
Sbjct: 6   ASGVCDGRSRSFT-SIPSGLTAAMK---SLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 171 IEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLL 228
           I   +       L +L+ L L DN +     +  G L++L  L+L  N +   G+     
Sbjct: 62  IN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 229 QLRKLETLDLQRNSLSGEIPE-DIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
            L  L+TL +       EI   D   L ++  L +   +L     QS++++  +  L L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 288 SNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL 347
            +  +  +  +   L  ++ L L    L       +    + + +   +          L
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR-----GSVL 235

Query: 348 STQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSR 407
           + ++    L L    LE +  ++      G    + +           E+  +  L + +
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 408 NNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGS 467
                +L         V  + + ++           ++  L  LDLS N           
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV-------- 347

Query: 468 DSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFS--GQLPQNLSNLSLLQHLDLHDN 525
                   + ++   G  PS     +  L LS+N      +  + L  L  L  LD+  N
Sbjct: 348 -----EEYLKNSACKGAWPS-----LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

Query: 526 NLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGN 585
                 P        ++ LNL +T +   +   +    +L++LD+SNNN L         
Sbjct: 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN-LDSFSLFLPR 452

Query: 586 LQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEI 645
           LQ                                              + +S N+L   +
Sbjct: 453 LQ---------------------------------------------ELYISRNKLK-TL 466

Query: 646 PSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL 689
           P +      L  + +S NQL+      F  L  L+ + L  N  
Sbjct: 467 PDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (379), Expect = 2e-38
 Identities = 94/523 (17%), Positives = 174/523 (33%), Gaps = 83/523 (15%)

Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI 257
            IP+ +     +  L L  NK +      L     L+ L L+ + ++    +   +L ++
Sbjct: 19  SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNKLK 316
             L LS+N L+         ++ L  L L  N       T LF  L  +++L +G  +  
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET- 135

Query: 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-N 375
                        +E+               +  T L  L++    L     Q L  + +
Sbjct: 136 ------------FSEIRRID----------FAGLTSLNELEIKALSLRNYQSQSLKSIRD 173

Query: 376 LGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
           +  + L  +     L     +   ++  L L   N +      +        +   +   
Sbjct: 174 IHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL 494
           S    +S + + +LL   L  +    +         +G  + S +    E+     VTI 
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNG---LGDFNPSESDVVSELGKVETVTIR 289

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRN---TAL 551
            L + +      L    S L  ++ + + ++ +     +F   L SL+ L+L        
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEE 349

Query: 552 EGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQD 611
               +       SLQ L LS N+L                    +    EI      +  
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHL------------------RSMQKTGEILLTLKNLTS 391

Query: 612 LIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS 671
           L                      D+S N     +P S    + ++ LNLS   ++  + +
Sbjct: 392 L----------------------DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT 427

Query: 672 TFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
                + LE LD+S+N+L          L +L  LY+S NKL 
Sbjct: 428 --CIPQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (333), Expect = 1e-32
 Identities = 79/490 (16%), Positives = 156/490 (31%), Gaps = 85/490 (17%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
             D +  S +  IP  +   A +  L LS N +T      +R    L  L L S+ ++  
Sbjct: 9   VCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-T 64

Query: 295 ISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTEL 353
           I    F  L  ++ L L  N L              + LS            W    + L
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHL--------------SSLS----------SSWFGPLSSL 100

Query: 354 TFLDLSENEL-EGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNF 410
            +L+L  N             L NL T+ + +      +    F    +L+ L +   + 
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 411 SGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDS 469
                +++     +  L L  +  +  +      +  +  L+L + + +         D 
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

Query: 470 LVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG 529
           +   +   + R S     SF      L                + +L    D + +    
Sbjct: 221 VSSPMKKLAFRGSVLTDESFN----ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 530 EFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGM 589
                  +  +++ L++    L   ++   S L  ++ + + N+ +   +P SF      
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSF------ 329

Query: 590 IDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEI---P 646
                              ++ L                      DLS N +  E     
Sbjct: 330 -------------SQHLKSLEFL----------------------DLSENLMVEEYLKNS 354

Query: 647 SSLGSLKGLKSLNLSYNQLQ--GNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT 704
           +  G+   L++L LS N L+           L+ L +LD+S N+    +P +    +++ 
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR 413

Query: 705 SLYLSNNKLS 714
            L LS+  + 
Sbjct: 414 FLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.9 bits (244), Expect = 2e-21
 Identities = 47/251 (18%), Positives = 78/251 (31%), Gaps = 45/251 (17%)

Query: 467 SDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN 526
           S    G  D  S  F+  +PS     +  L LS NK +     +L   + LQ L L  + 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 527 LTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG-KIPSSFGN 585
           +          L SL+ L+L +  L    +     L+SL+ L+L  N      + S F N
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 586 LQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEI 645
           L            L  +                                 + N +   EI
Sbjct: 122 L----------TNLQTL--------------------------------RIGNVETFSEI 139

Query: 646 P-SSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT 704
                  L  L  L +    L+     +  ++  +  L L  +  +  +      L  + 
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 705 SLYLSNNKLSG 715
            L L +  L+ 
Sbjct: 200 YLELRDTNLAR 210

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (402), Expect = 5e-42
 Identities = 103/486 (21%), Positives = 182/486 (37%), Gaps = 60/486 (12%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
              M   L   ++   V      +L ++T L      +       +  L  L  ++ S N
Sbjct: 24  AEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 78

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ 229
            +     + +  L  L  +++++N I    P  + NLTNL  L+L  N+ +   PL    
Sbjct: 79  QLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--N 132

Query: 230 LRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289
           L  L  L+L  N++S      +  L ++  L+  N        + + N+T L  L + SN
Sbjct: 133 LTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSN 187

Query: 290 VLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLST 349
            +S      L  L  ++SL    N++     + I+    L ELSL    ++    L  ++
Sbjct: 188 KVSDISV--LAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKDIGTL--AS 241

Query: 350 QTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRN 408
            T LT LDL+ N++    P  LS L  L  + L  N ++     PL     L+ L L+ N
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN 297

Query: 409 NFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSD 468
                    I    ++  L L  NN S      +S++ +L  L   NN  S    +  + 
Sbjct: 298 QLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNKVSD-VSSLANL 352

Query: 469 SLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT 528
           + +  +    N+ S   P                        L+NL+ +  L L+D   T
Sbjct: 353 TNINWLSAGHNQISDLTP------------------------LANLTRITQLGLNDQAWT 388

Query: 529 GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL--LGKIPSSFGNL 586
                + + +S    +     AL       +S+  S    D++ N      ++  +F   
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQP 446

Query: 587 QGMIDT 592
             +   
Sbjct: 447 VTIGKG 452

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (385), Expect = 1e-39
 Identities = 112/527 (21%), Positives = 186/527 (35%), Gaps = 99/527 (18%)

Query: 188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEI 247
            I  D  I          L    K  L +   +  +  +   L ++ TL   R  +    
Sbjct: 7   TITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK--S 60

Query: 248 PEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKS 307
            + +  L N+T +  SNN LT   P  ++N+TKLV + +++N ++      L +L  +  
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 308 LYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTY 367
           L L  N++   D +  +    L  L L S ++     L  S  T L  L       +   
Sbjct: 117 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISAL--SGLTSLQQLSFGNQVTDLKP 172

Query: 368 PQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVL 427
              L+   L  + +S N ++      L +  NL  L+ + N  S   P  +G  T++  L
Sbjct: 173 LANLT--TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 428 MLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPS 487
            L+ N        +++++  L  LDL+NN  S   P  G   L                 
Sbjct: 227 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLT---------------- 268

Query: 488 SFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLR 547
                   L L  N+ S      L+ L+ L +L+L++N L     + +S L +L  L L 
Sbjct: 269 -------ELKLGANQISN--ISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 317

Query: 548 NTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPV 607
              +       +S+LT LQ L   NN +     SS  NL         +  L        
Sbjct: 318 FNNISDIS--PVSSLTKLQRLFFYNNKV--SDVSSLANLTN-------INWL-------- 358

Query: 608 EIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG 667
                                         +NQ+S   P  L +L  +  L L+      
Sbjct: 359 ---------------------------SAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

Query: 668 NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
              +   N+ I  T+     +L    P T +     T   ++ N  S
Sbjct: 390 APVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (383), Expect = 2e-39
 Identities = 98/568 (17%), Positives = 187/568 (32%), Gaps = 124/568 (21%)

Query: 129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL 188
                L       L   N+  ++     +L  +  L      I+  +   V  L NL Q+
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG-VEYLNNLTQI 73

Query: 189 ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIP 248
              +N +    P  + NLT L  + +  N+ +   PL+   L  L  L L  N ++   P
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDIDP 129

Query: 249 EDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSL 308
             +  L N+  L LS+N ++     ++  +T L  L   + V   +    L +L  ++ L
Sbjct: 130 --LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP---LANLTTLERL 182

Query: 309 YLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYP 368
            +  NK+                          S    L+  T L  L  + N++    P
Sbjct: 183 DISSNKV--------------------------SDISVLAKLTNLESLIATNNQISDITP 216

Query: 369 QWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVL 427
             L  L NL  + L+ N L       L    NL+ L L+ N  S   P  +   T +  L
Sbjct: 217 --LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270

Query: 428 MLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPS 487
            L +N  S      ++ +  L  L+L+ N          +   + ++ +  N  S   P 
Sbjct: 271 KLGANQISN--ISPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP- 326

Query: 488 SFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLR 547
                                  +S+L+ LQ L  ++N ++    + L+ L+++  L+  
Sbjct: 327 -----------------------VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 361

Query: 548 NTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPV 607
           +  +       L+NLT +  L L++        +   N+                     
Sbjct: 362 HNQISDLT--PLANLTRITQLGLNDQAWTNAPVNYKANVS-------------------- 399

Query: 608 EIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG 667
                                       + N   +   P+++         ++++N    
Sbjct: 400 ------------------------IPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY 435

Query: 668 NIPSTFGNLEILETLDLSHNSLSGKIPQ 695
               ++       T+     + SG + Q
Sbjct: 436 TNEVSY-TFSQPVTIGKGTTTFSGTVTQ 462

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  140 bits (355), Expect = 8e-36
 Identities = 102/470 (21%), Positives = 179/470 (38%), Gaps = 77/470 (16%)

Query: 252 GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLG 311
           G L + TI    +  +          + + +   L    ++  +S    DL  + +L   
Sbjct: 1   GPLGSATIT--QDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQAD 54

Query: 312 GNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWL 371
              +K  D V  +    LT+++  +  +    PL     T+L  + ++ N++    P  L
Sbjct: 55  RLGIKSIDGVEYLNN--LTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITP--L 108

Query: 372 SEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLS 430
           + L NL  + L +N +T     PL    NL+ L LS N  S      +   TS+  L   
Sbjct: 109 ANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG 164

Query: 431 SNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFG 490
            N  +    K ++N+  L  LD+S+N  S +       + +  +  ++N+ S   P    
Sbjct: 165 -NQVTD--LKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGIL 220

Query: 491 VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA 550
             +  LSL+ N+        L++L+ L  LDL +N ++   P  LS L+ L  L L    
Sbjct: 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 551 LEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQ 610
           +       L+ LT+L  L+L+ N L  +  S   NL+ +                     
Sbjct: 277 ISNI--SPLAGLTALTNLELNENQL--EDISPISNLKNL--------------------- 311

Query: 611 DLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP 670
                                + + L  N +S   P  + SL  L+ L    N++     
Sbjct: 312 ---------------------TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--V 346

Query: 671 STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
           S+  NL  +  L   HN +S   P   A L ++T L L++   +      
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 394

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (353), Expect = 2e-35
 Identities = 101/412 (24%), Positives = 168/412 (40%), Gaps = 33/412 (8%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +  L+ + ++ N +    P    ANLT LT L L +N +    P  L NL  L 
Sbjct: 83  ITPLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLN 137

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L+LS+N I     S ++GL +L+QL   + +        + NLT L +L +  NK S  
Sbjct: 138 RLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDI 192

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
             L+  +L  LE+L    N +S   P  +G L N+  L+L+ N L      ++ ++T L 
Sbjct: 193 SVLA--KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLT 246

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342
            L L +N +S      L  L  +  L LG N++     ++ +    LT L L    +   
Sbjct: 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA--LTNLELNENQLEDI 302

Query: 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLS 401
            P+  S    LT+L L  N +    P  +S L  L  +   +N ++      L    N++
Sbjct: 303 SPI--SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNIN 356

Query: 402 VLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE 461
            L    N  S   P  +   T +  L L+   ++   P +      +     +       
Sbjct: 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALIA 413

Query: 462 FPAFGSDSLVGHVDISSN--RFSGEVPSSFGVTILMLSLSENKFSGQLPQNL 511
                        DI+ N   ++ EV  +F   +  +      FSG + Q L
Sbjct: 414 PATISDGGSYTEPDITWNLPSYTNEVSYTFSQPV-TIGKGTTTFSGTVTQPL 464

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (366), Expect = 3e-38
 Identities = 78/355 (21%), Positives = 151/355 (42%), Gaps = 27/355 (7%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P   +   +   L   S+   V       L  +T L +    +  SI   +  L  LE
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA-SIQG-IEYLTNLE 69

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
           +L+L+ N I     S ++ L  L  L +  N I     + + NLTNL +L L ++  S  
Sbjct: 70  YLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDI 125

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
            PL+   L K+ +L+L  N    ++   +  +  +  L ++ + +    P  I N+T L 
Sbjct: 126 SPLA--NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342
           +L L+ N +       L  L  +       N++     V+ + +  L  L + +  +   
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMTR--LNSLKIGNNKITDL 236

Query: 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLS 401
            P  L+  ++LT+L++  N++  +    + +L  L  + +  N ++      L     L+
Sbjct: 237 SP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLN 290

Query: 402 VLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNN 456
            L L+ N    E  E IG  T++  L LS N+ +   P  ++++ ++   D +N 
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 3e-36
 Identities = 78/439 (17%), Positives = 156/439 (35%), Gaps = 95/439 (21%)

Query: 137 LTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQ 196
              L      +N   P    +L       L   ++   ++     L+++ +L++    + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 197 GQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN 256
                 I  LTNL  L+L  N+ +   PLS   L KL  L +  N ++      +  L N
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKIT--DISALQNLTN 111

Query: 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           +  L L+ + ++   P  + N+TK+ +L L +N    ++S  L ++ G+  L +  +K+K
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK 168

Query: 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNL 376
               ++ +    L  LSL    +    PL  ++ T L +     N++             
Sbjct: 169 DVTPIANLTD--LYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITD----------- 213

Query: 377 GTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG 436
                           P+     L+ L +  N  +      +   + +  L + +N  S 
Sbjct: 214 --------------ITPVANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD 257

Query: 437 HVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILML 496
               ++ ++ +L +L++ +N  S                                     
Sbjct: 258 --INAVKDLTKLKMLNVGSNQISD------------------------------------ 279

Query: 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT 556
                         L+NLS L  L L++N L  E    +  L++L  L L    +     
Sbjct: 280 -----------ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR- 327

Query: 557 DGLSNLTSLQILDLSNNNL 575
             L++L+ +   D +N  +
Sbjct: 328 -PLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  138 bits (351), Expect = 3e-36
 Identities = 69/372 (18%), Positives = 132/372 (35%), Gaps = 28/372 (7%)

Query: 112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAI 171
             TL      +    P    A+L       L+  ++   +      L  +  L ++   +
Sbjct: 2   AATLATLPAPINQIFP---DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 172 EGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLR 231
              +   +  L NL+ L L+ N I    P  + NL  L  L +  NK +     +L  L 
Sbjct: 57  A-SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLT 110

Query: 232 KLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL 291
            L  L L  +++S      +  L  +  L L  N         + NMT L  L +  + +
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKV 167

Query: 292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT 351
                  + +L  + SL L  N+++    ++ +    L   +     +    P  ++  T
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISPLASLTS--LHYFTAYVNQITDITP--VANMT 221

Query: 352 ELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNF 410
            L  L +  N++    P  L+ L  L  + +  N ++      + +   L +L +  N  
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

Query: 411 SGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSL 470
           S      +   + +  L L++N       + I  +  L  L LS N  +       S S 
Sbjct: 278 SD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRPLASLSK 334

Query: 471 VGHVDISSNRFS 482
           +   D ++    
Sbjct: 335 MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  135 bits (343), Expect = 4e-35
 Identities = 76/412 (18%), Positives = 155/412 (37%), Gaps = 67/412 (16%)

Query: 304 GMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENEL 363
           G  +L      +      + + +       L+  SV   +         +T L ++  ++
Sbjct: 1   GAATLATLPAPINQIFPDADLAE--GIRAVLQKASVTDVVTQ--EELESITKLVVAGEKV 56

Query: 364 EGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQST 422
                Q +  L NL  + L+ N +T     PL     L+ L +  N  +      +   T
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLT 110

Query: 423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFS 482
           ++  L L+ +N S      ++N+ ++  L+L  N    +     + + + ++ ++ ++  
Sbjct: 111 NLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK 168

Query: 483 GEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQ 542
              P +    +  LSL+ N+        L++L+ L +   + N +T   P  ++ ++ L 
Sbjct: 169 DVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLN 224

Query: 543 VLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEI 602
            L + N  +       L+NL+ L  L++  N +     ++  +L                
Sbjct: 225 SLKIGNNKITDL--SPLANLSQLTWLEIGTNQI--SDINAVKDLT--------------- 265

Query: 603 FSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSY 662
                +++ L                      ++ +NQ+S    S L +L  L SL L+ 
Sbjct: 266 -----KLKML----------------------NVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           NQL        G L  L TL LS N ++   P   A L ++ S   +N  + 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (327), Expect = 5e-33
 Identities = 71/389 (18%), Positives = 141/389 (36%), Gaps = 67/389 (17%)

Query: 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLT 387
              L+     +    P   +   E     L +  +         EL ++  ++++   + 
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 388 GSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYR 447
                 +    NL  L L+ N  +      +     +  L + +N  +     ++ N+  
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD--ISALQNLTN 111

Query: 448 LLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL-MLSLSENKFSGQ 506
           L  L L+ ++ S       + + +  +++ +N    ++     +T L  L+++E+K    
Sbjct: 112 LRELYLNEDNISD-ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD- 169

Query: 507 LPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQ 566
               ++NL+ L  L L+ N +    P  L+ L+SL         +       ++N+T L 
Sbjct: 170 -VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTRLN 224

Query: 567 ILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSK 626
            L + NN +     S   NL         L  L                           
Sbjct: 225 SLKIGNNKI--TDLSPLANLSQ-------LTWL--------------------------- 248

Query: 627 SLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSH 686
                   ++  NQ+S    +++  L  LK LN+  NQ+     S   NL  L +L L++
Sbjct: 249 --------EIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 687 NSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715
           N L  +  +    L  LT+L+LS N ++ 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (326), Expect = 7e-33
 Identities = 74/310 (23%), Positives = 135/310 (43%), Gaps = 23/310 (7%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           +  I  + +L  L+L+ N +    P    +NL +LT L +  N +  +  S L NL  L 
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L L+ + I     S +A L  +  L L  N       + + N+T L+ L++ ++K    
Sbjct: 114 ELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDV 170

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
            P++   L  L +L L  N +    P  + +L ++       N +T   P  + NMT+L 
Sbjct: 171 TPIA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLN 224

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342
           +L++ +N ++      L +L  +  L +G N++   + V  + K  L  L++ S  +   
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTK--LKMLNVGSNQISDI 280

Query: 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLS 401
               L+  ++L  L L+ N+L     + +  L NL T+ LS N +T     PL     + 
Sbjct: 281 SV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMD 336

Query: 402 VLVLSRNNFS 411
               +     
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  116 bits (294), Expect = 1e-28
 Identities = 68/369 (18%), Positives = 134/369 (36%), Gaps = 65/369 (17%)

Query: 353 LTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFS 411
              L      +   +P   ++L      +L    +T        E  +++ LV++    +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA 57

Query: 412 GELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLV 471
               + I   T++  L L+ N  +      +SN+ +L  L +  N  + +  A  + + +
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT-DISALQNLTNL 112

Query: 472 GHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEF 531
             + ++ +  S   P +    +  L+L  N         LSN++ L +L + ++ +    
Sbjct: 113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVT 171

Query: 532 PAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID 591
           P  ++ L+ L  L+L    +E      L++LTSL       N +    P    N+     
Sbjct: 172 P--IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITP--VANMT---- 221

Query: 592 TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGS 651
                            +  L                       + NN+++    S L +
Sbjct: 222 ----------------RLNSL----------------------KIGNNKITD--LSPLAN 241

Query: 652 LKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
           L  L  L +  NQ+     +   +L  L+ L++  N +S         L QL SL+L+NN
Sbjct: 242 LSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNN 297

Query: 712 KLSGRIPES 720
           +L     E 
Sbjct: 298 QLGNEDMEV 306

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  140 bits (356), Expect = 5e-36
 Identities = 86/524 (16%), Positives = 174/524 (33%), Gaps = 91/524 (17%)

Query: 180 AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLR-------- 231
                L++ +   + +  ++P E  N+ +  +     +++    P    + R        
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 232 -----KLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRL 286
                +   L+L    LS  +PE      ++  L  S N+LT  +P+  +++  L+    
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 287 DSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346
           +   LS            ++ L +  N+L+    +       L  + + + S++  +P  
Sbjct: 122 NLKALSDLPP-------LLEYLGVSNNQLEKLPELQNSSF--LKIIDVDNNSLK-KLPDL 171

Query: 347 LSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLS 406
                 L F+    N+LE   P+  +   L  +   +N L   LP       +L  +V  
Sbjct: 172 P---PSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK-KLPDLPL---SLESIVAG 223

Query: 407 RNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFG 466
            N    ELPE +     +  +   +N     +P    ++  L V D           +  
Sbjct: 224 NNILE-ELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQS-- 278

Query: 467 SDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN 526
               +  +D+S N FS  +       +  L+ S N+    L     +   L+ L++ +N 
Sbjct: 279 ----LTFLDVSENIFS-GLSELPP-NLYYLNASSNEIR-SLCDLPPS---LEELNVSNNK 328

Query: 527 LTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNL 586
           L  E PA   +L  L         +            +L+ L +  N L  + P    ++
Sbjct: 329 LI-ELPALPPRLERLIASFNHLAEVPELP-------QNLKQLHVEYNPLR-EFPDIPESV 379

Query: 587 QGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIP 646
           +        L     +   P   Q+L                     + +  N L  E P
Sbjct: 380 E-------DLRMNSHLAEVPELPQNLKQ-------------------LHVETNPLR-EFP 412

Query: 647 SSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS 690
               S   ++ L ++  ++           + LE     H+   
Sbjct: 413 DIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.3 bits (248), Expect = 4e-22
 Identities = 79/381 (20%), Positives = 139/381 (36%), Gaps = 74/381 (19%)

Query: 368 PQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQ------- 420
           P+ +S   L   +   + LT  +P      ++ +    + + +    P   G+       
Sbjct: 5   PRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 421 ------STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHV 474
                       L L++   S  +P+   +   L  L  S NS +       S   +   
Sbjct: 64  RLRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTELPELPQSLKSLLVD 119

Query: 475 DISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAF 534
           + +    S   P      +  L +S N+   +LP  L N S L+ +D+ +N+L  + P  
Sbjct: 120 NNNLKALSDLPPL-----LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLP-- 169

Query: 535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPS 594
                SL+ +   N  LE  + + L NL  L  +   NN+L  K+P    +L+ ++   +
Sbjct: 170 -DLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNN 225

Query: 595 ILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKG 654
           IL  LPE+ + P  +  +                         NN L   +P    SL+ 
Sbjct: 226 ILEELPELQNLP-FLTTI----------------------YADNNLLK-TLPDLPPSLE- 260

Query: 655 LKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG-------------KIPQTFAKLQ 701
             +LN+  N L  ++P    +L  L+  +   + LS              +I        
Sbjct: 261 --ALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 317

Query: 702 QLTSLYLSNNKLSGRIPESPQ 722
            L  L +SNNKL   +P  P 
Sbjct: 318 SLEELNVSNNKLI-ELPALPP 337

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 5e-21
 Identities = 63/359 (17%), Positives = 117/359 (32%), Gaps = 53/359 (14%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           L  +     L  +D+  NS++ ++P         L ++   +N L   +P  L NL +L 
Sbjct: 146 LPELQNSSFLKIIDVDNNSLK-KLPD----LPPSLEFIAAGNNQLE-ELPE-LQNLPFLT 198

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            +    N     L        +L+ ++  +N++  +   E+ NL  L  +    N     
Sbjct: 199 AIYADNN----SLKKLPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-T 251

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
           +P     L  L   D     L            ++T L +S N  +G + +   N+  L 
Sbjct: 252 LPDLPPSLEALNVRDNYLTDLPELPQ-------SLTFLDVSENIFSG-LSELPPNLYYL- 302

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM--LTELSLRSCSVR 340
                 N  S EI +       ++ L +  NKL        +P     L  L      + 
Sbjct: 303 ------NASSNEIRSLCDLPPSLEELNVSNNKL------IELPALPPRLERLIASFNHLA 350

Query: 341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNL 400
             +P        L  L +  N L   +P     +     +  ++ L   +P      +NL
Sbjct: 351 -EVPELPQN---LKQLHVEYNPLR-EFPDIPESV---EDLRMNSHLA-EVPELP---QNL 398

Query: 401 SVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFS 459
             L +  N    E P+          L ++S         +     +L      ++   
Sbjct: 399 KQLHVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.1 bits (237), Expect = 1e-20
 Identities = 60/332 (18%), Positives = 113/332 (34%), Gaps = 78/332 (23%)

Query: 390 LPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLL 449
           + P    +  L   +   +N + E+P       S      + + +  + P        + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 450 VLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQ 509
           V  L +                  +++++   S  +P      +  L  S N  + +LP+
Sbjct: 62  VSRLRDCLDRQ----------AHELELNNLGLS-SLPELPP-HLESLVASCNSLT-ELPE 108

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILD 569
              +L  L   + +   L+            L+ L + N  LE  + + L N + L+I+D
Sbjct: 109 LPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIID 159

Query: 570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA 629
           + NN+L  K+P    +L+                                          
Sbjct: 160 VDNNSL-KKLPDLPPSLE------------------------------------------ 176

Query: 630 IYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL 689
               +   NNQL  E+P  L +L  L ++    N L+  +P    +LE   ++   +N L
Sbjct: 177 ---FIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNIL 227

Query: 690 SGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP 721
                     L  LT++Y  NN L   +P+ P
Sbjct: 228 E--ELPELQNLPFLTTIYADNNLLK-TLPDLP 256

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  140 bits (354), Expect = 1e-35
 Identities = 72/449 (16%), Positives = 142/449 (31%), Gaps = 37/449 (8%)

Query: 131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL 190
             N  R     + D++L  ++ S   +   ++ LDLS N +    ++ +A    L+ L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED 250
             N++      ++ +L+ L  L L  N         LL    +ETL    N++S  +   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCS 117

Query: 251 IGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLY 309
            G       + L+NN +T          +++  L L  N +       L      ++ L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 310 LGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ 369
           L  N +       +  K  L  L L S  +   +     +   +T++ L  N+L     +
Sbjct: 176 LQYNFIYDVKGQVVFAK--LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 370 WLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLM 428
            L    NL    L  N          F S+N  V  +++     +L     +  +V  L 
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLG 289

Query: 429 LSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSS 488
                    +P   ++  RL+ L    ++                +    +         
Sbjct: 290 HYGAYCCEDLPAPFAD--RLIALKRKEHA---------------LLSGQGSETERLECER 332

Query: 489 FGVTIL-MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLR 547
                   +   + ++   + Q          L+     L  +        + L    L+
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD-GTLQ 391

Query: 548 NTALEGSITDGLSNLTSLQILDLSNNNLL 576
               +  +       + LQ+L        
Sbjct: 392 QAVGQIELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (318), Expect = 6e-31
 Identities = 70/497 (14%), Positives = 150/497 (30%), Gaps = 26/497 (5%)

Query: 222 GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKL 281
            I        + +   +  +SL   +     +  N+  L LS N L+      +   TKL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 282 VTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG 341
             L L SNVL   +   L  L  +++L L  N ++      ++    +  L   + ++  
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 342 SIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RN 399
            +    S       + L+ N++             +  + L  N +       L  S   
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 400 LSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFS 459
           L  L L  N    ++   +     +  L LSSN  +  +     +   +  + L NN   
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

Query: 460 GEFPAFGSDSLVGHVDISSNRFS-GEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQ 518
               A      + H D+  N F  G +   F     + ++++        QN    ++  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 519 HLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS----ITDGLSNLTSLQILDLSNNN 574
                          F  +L +L+       + +GS    +     N    + +D     
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 575 LLGKIPSSFGNLQGMI----DTPSILPTLPEIFSFPVEIQD--LIVNWKNSKRGLSSKSL 628
               I       Q  I       ++   +        E+         +   +  + +  
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

Query: 629 AIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNS 688
            +  L  +        +         ++  ++  ++            ++    DL+  S
Sbjct: 408 PLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467

Query: 689 LSGKIPQTFAKLQQLTS 705
            +  + +   + Q L S
Sbjct: 468 ANATLQELVVREQNLAS 484

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (295), Expect = 4e-28
 Identities = 66/441 (14%), Positives = 135/441 (30%), Gaps = 23/441 (5%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
             L  L+LS N +   +      +L+ L  LDL +N +      +L     +E L  + N
Sbjct: 58  TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANN 109

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLL 228
            I        +  +  K + L +N I      + G  + +  L L+ N+           
Sbjct: 110 NIS---RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDS 288
               LE L+LQ N +  ++   +   A +  L LS+N L   +    ++   +  + L +
Sbjct: 167 SSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 289 NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM-LTELSLRS-CSVRGSIPLW 346
           N L   I   L   Q ++   L GN            K   +  ++ ++   + G     
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 347 LSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSD--NMLTGSLPPPLFESRNLSVLV 404
            +  T   +      +L   +   L  L      L       T  L            + 
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 405 LSRNNFSGELPETIGQSTSVMVLMLSSNNFSG---HVPKSISNIYRLLVLDLSNNSFSGE 461
             +  +   + +   +  + + L            +  ++ + +   L   +        
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA 402

Query: 462 FPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLD 521
                   L+  +         E  S     I    + ++K +    +N     L    D
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462

Query: 522 LHDNNLTGEFPAFLSQLSSLQ 542
           L   +        + +  +L 
Sbjct: 463 LALASANATLQELVVREQNLA 483

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (292), Expect = 1e-27
 Identities = 67/399 (16%), Positives = 119/399 (29%), Gaps = 28/399 (7%)

Query: 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLT 387
                +   S++ ++     +   +  LDLS N L       L+    L  + LS N+L 
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 388 GSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYR 447
                 L     L  L L+ N         +    S+  L  ++NN S  V  S      
Sbjct: 72  E--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQ--G 121

Query: 448 LLVLDLSNNSFSG-EFPAFGSDSLVGHVDISSNRFSGEVPSSFG---VTILMLSLSENKF 503
              + L+NN  +       G  S V ++D+  N       +       T+  L+L  N  
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 504 SGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLT 563
              +   +   + L+ LDL  N L           + +  ++LRN  L   I   L    
Sbjct: 182 Y-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 564 SLQILDLSNNNL-LGKIPSSFGNLQGM----IDTPSILPTLPEIFSFPVEIQDLIVNWKN 618
           +L+  DL  N    G +   F   Q +      T   L    E       +         
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 619 SKRGLSSKSLAIYSLMDLSNNQLSG----EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFG 674
                 +  L      + +     G     +     +    + ++    Q +  I     
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTL 357

Query: 675 NLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
             +   TL+    +L  ++        +L          
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  112 bits (282), Expect = 2e-26
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 25/352 (7%)

Query: 375 NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
                 ++D+ L  +L      + N+  L LS N  S      +   T + +L LSSN  
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL 494
                  + ++  L  LDL+NN              +  +  ++N  S  V  S G    
Sbjct: 71  YE--TLDLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS-RVSCSRGQGKK 123

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG-EFPAFLSQLSSLQVLNLRNTALEG 553
            + L+ NK +     +    S +Q+LDL  N +    F    +   +L+ LNL+   +  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-- 181

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID---TPSILPTLPEIFSFPVEIQ 610
               G      L+ LDLS+N L   +   F +  G+       + L  + +   F   ++
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

Query: 611 DLIVNW----KNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQ 666
              +        + R   SK+     +  ++   +      +          +      +
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQ---RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 667 GNIPSTFGNLEILETLDLSHNSLSG----KIPQTFAKLQQLTSLYLSNNKLS 714
                    L  L+  + +  S  G    ++        +   +     +  
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  112 bits (281), Expect = 3e-26
 Identities = 49/364 (13%), Positives = 108/364 (29%), Gaps = 23/364 (6%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
              +  + +L TLDL+ N +              +  L   +NN++  +          +
Sbjct: 73  TLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-RVSCSRGQG--KK 123

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSG 221
            + L+ N I             ++ L L  N I          +   L  L+L+ N    
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 222 GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKL 281
            +    +   KL+TLDL  N L+  +  +  + A +T ++L NN L   I +++R    L
Sbjct: 183 DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 282 VTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG 341
               L  N          F  +  +   +    +K     +     + T     +     
Sbjct: 240 EHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED 298

Query: 342 SIPLWLS-----TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFE 396
               +        + E   L    +E E    +  ++     +         ++   +  
Sbjct: 299 LPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTL 357

Query: 397 S-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN 455
             +    L   +     ++         +   +  +      +  +      L +L    
Sbjct: 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQSPLQLLRAIV 416

Query: 456 NSFS 459
             + 
Sbjct: 417 KRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 55/277 (19%), Positives = 95/277 (34%), Gaps = 59/277 (21%)

Query: 442 ISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSL 498
             N  R  +  ++++S          S   V  +D+S N  S    +       + +L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 499 SENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG 558
           S N        +L +LS L+ LDL++N +       L    S++ L+  N  +   ++  
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVS-- 115

Query: 559 LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKN 618
            S     + + L+NN +        G    +                             
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ---------------------------- 147

Query: 619 SKRGLSSKSLAIYSLMDLSNNQLSG-EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLE 677
                          +DL  N++          S   L+ LNL YN +  ++        
Sbjct: 148 --------------YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFA 191

Query: 678 ILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
            L+TLDLS N L+  +   F     +T + L NNKL 
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 41/210 (19%), Positives = 76/210 (36%), Gaps = 31/210 (14%)

Query: 507 LPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQ 566
           + +   N +  +   + D++L     +      +++ L+L    L       L+  T L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 567 ILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS- 625
           +L+LS+N L         +L         L TL           DL  N+        S 
Sbjct: 62  LLNLSSNVLYE--TLDLESLST-------LRTL-----------DLNNNYVQELLVGPSI 101

Query: 626 KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLS 685
           ++L        +NN +S  +  S    +G K++ L+ N++        G    ++ LDL 
Sbjct: 102 ETL------HAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 686 HNSLSG-KIPQTFAKLQQLTSLYLSNNKLS 714
            N +      +  A    L  L L  N + 
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 18/71 (25%), Positives = 29/71 (40%)

Query: 645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT 704
           I     +    K   ++ + L+  + S   +   ++ LDLS N LS       A   +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 705 SLYLSNNKLSG 715
            L LS+N L  
Sbjct: 62  LLNLSSNVLYE 72

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  134 bits (339), Expect = 9e-35
 Identities = 60/321 (18%), Positives = 99/321 (30%), Gaps = 36/321 (11%)

Query: 412 GELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLV 471
           G        S+    L    +         +S   R    D +    +       +  + 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI- 60

Query: 472 GHVDISSNRFSGEVPSSFGVTILM----LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNL 527
              +  + R                   L L       Q P     LS LQH+ +    L
Sbjct: 61  ---ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116

Query: 528 TGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQ 587
             E P  + Q + L+ L L    L  ++   +++L  L+ L +     L ++P    +  
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 588 GMIDTPSILPTLPE-------IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQ 640
                   L  L         I S P  I +L             ++L     + + N+ 
Sbjct: 175 -ASGEHQGLVNLQSLRLEWTGIRSLPASIANL-------------QNLKS---LKIRNSP 217

Query: 641 LSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKL 700
           LS  +  ++  L  L+ L+L       N P  FG    L+ L L   S    +P    +L
Sbjct: 218 LS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 701 QQLTSLYLSNNKLSGRIPESP 721
            QL  L L       R+P   
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLI 297

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (320), Expect = 3e-32
 Identities = 55/365 (15%), Positives = 101/365 (27%), Gaps = 67/365 (18%)

Query: 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTG 388
              L  +  +        LS        D +            +  N   +         
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69

Query: 389 SLPPPLFE--SRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIY 446
           +    L +        L L       + P+   + + +  + + +      +P ++    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFA 127

Query: 447 RLLVLDLSNNSFSGEFPA-FGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSG 505
            L  L L+ N      PA   S + +  + I +     E+P                 S 
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA-------------ST 173

Query: 506 QLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSL 565
                   L  LQ L L    +    PA ++ L +L+ L +RN+ L  ++   + +L  L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 566 QILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS 625
           + LDL     L   P  FG                                         
Sbjct: 232 EELDLRGCTALRNYPPIFGGR--------------------------------------- 252

Query: 626 KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLS 685
             L    L D   + L   +P  +  L  L+ L+L        +PS    L     + + 
Sbjct: 253 APLKRLILKD--CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

Query: 686 HNSLS 690
            +  +
Sbjct: 310 PHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  125 bits (315), Expect = 1e-31
 Identities = 55/327 (16%), Positives = 103/327 (31%), Gaps = 28/327 (8%)

Query: 133 NLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD 192
           + +    L  + +         L   +     D +        + R A   N +      
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTG 65

Query: 193 NLIQGQIPAEIGNLT--NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED 250
             ++      + + T      L LR        P    +L  L+ + +    L  E+P+ 
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 251 IGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYL 310
           +   A +  L L+ N L  A+P SI ++ +L  L + +     E+   L           
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 311 GGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQW 370
             N               L  L L    +R S+P  ++    L  L +  + L       
Sbjct: 182 LVN---------------LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 371 LSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLML 429
           +  L  L  + L       + PP       L  L+L   +    LP  I + T +  L L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 430 SSNNFSGHVPKSISNIYRLLVLDLSNN 456
                   +P  I+ +    ++ +  +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (301), Expect = 1e-29
 Identities = 53/220 (24%), Positives = 87/220 (39%), Gaps = 14/220 (6%)

Query: 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLD 165
            FR+  L  + +    +  E+P         L  L L  N L  ++P+ + +L  L  L 
Sbjct: 100 AFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156

Query: 166 LSANAI---------EGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
           + A                S    GL NL+ L L+   I+  +PA I NL NL  L +R 
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215

Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIR 276
           +  S  +  ++  L KLE LDL+  +     P   G  A +  L L + +    +P  I 
Sbjct: 216 SPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 277 NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
            +T+L  L L   V    + + +  L     + +  +   
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (281), Expect = 4e-27
 Identities = 54/354 (15%), Positives = 109/354 (30%), Gaps = 66/354 (18%)

Query: 86  LDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN 145
           L       L           + + +     D +              N            
Sbjct: 17  LYFQGSTALRPYHDV-----LSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTGR 66

Query: 146 NLNGSIPSQLFNLRY--LEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI 203
            L  +    L +        L+L +  +  +   +   L +L+ + +D   +  ++P  +
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 204 GNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALS 263
                L  L+L +N     +P S+  L +L  L ++      E+PE + +          
Sbjct: 124 QQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST--------- 173

Query: 264 NNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSI 323
                       + +  L +LRL+   +   +   + +LQ +KSL +  + L        
Sbjct: 174 ------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS------A 220

Query: 324 VPKCM-----LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGT 378
           +   +     L EL LR C+   + P     +  L  L L +                  
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC----------------- 263

Query: 379 VILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSN 432
                + L  +LP  +     L  L L        LP  I Q  +  ++++  +
Sbjct: 264 -----SNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  110 bits (277), Expect = 1e-26
 Identities = 56/391 (14%), Positives = 105/391 (26%), Gaps = 81/391 (20%)

Query: 182 LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN 241
               + L    +         +      +     +                 +       
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGR 66

Query: 242 SLSGEIPEDIG--TLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWL 299
           +L     + +   T      L L +  L    P     ++ L  + +D+  L  E+   +
Sbjct: 67  ALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 300 FDLQGMKSLYLGGNKLKWNDNVSIVPKCM-----LTELSLRSCSVRGSIPLWLSTQTELT 354
               G+++L L  N L+       +P  +     L ELS+R+C     +P  L++     
Sbjct: 124 QQFAGLETLTLARNPLR------ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 355 FLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGEL 414
                 N         L  L L         +  SLP  +   +NL  L +  +  S  L
Sbjct: 178 EHQGLVN---------LQSLRL-----EWTGIR-SLPASIANLQNLKSLKIRNSPLS-AL 221

Query: 415 PETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHV 474
              I     +  L L       + P        L  L L + S                 
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS----------------- 264

Query: 475 DISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAF 534
                                 +L        LP ++  L+ L+ LDL         P+ 
Sbjct: 265 ----------------------NLLT------LPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSL 565
           ++QL +  ++ +                 + 
Sbjct: 297 IAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (275), Expect = 2e-26
 Identities = 55/365 (15%), Positives = 96/365 (26%), Gaps = 73/365 (20%)

Query: 226 SLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLR 285
                   E L  Q ++      + +           +             N        
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIET 62

Query: 286 LDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL 345
                L    +  L D                              L LRS  +    P 
Sbjct: 63  RTGRALK-ATADLLEDATQPG----------------------RVALELRSVPLP-QFPD 98

Query: 346 WLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLV 404
                + L  + +    L    P  + +   L T+ L+ N L  +LP  +     L  L 
Sbjct: 99  QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156

Query: 405 LSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA 464
           +       ELPE +  + +                     +  L  L L           
Sbjct: 157 IRACPELTELPEPLASTDA---------------SGEHQGLVNLQSLRLEWTGIR----- 196

Query: 465 FGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHLDL 522
                               +P+S      +  L +  +  S  L   + +L  L+ LDL
Sbjct: 197 -------------------SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236

Query: 523 HDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSS 582
                   +P      + L+ L L++ +   ++   +  LT L+ LDL     L ++PS 
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296

Query: 583 FGNLQ 587
              L 
Sbjct: 297 IAQLP 301

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 3/150 (2%)

Query: 95  DSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQ 154
           + + ++        + +L +L L +  ++  +P    ANL  L  L ++++ L+ ++   
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLS-ALGPA 224

Query: 155 LFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSL 214
           + +L  LE LDL              G   LK+LIL D      +P +I  LT L KL L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 215 RQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244
           R       +P  + QL     + +  +  +
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLD 165
           I  +  L  LDL   +     P   F     L  L LKD +   ++P  +  L  LE LD
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 166 LSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIP 200
           L       +L S +A L     +++  +L      
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  138 bits (349), Expect = 1e-34
 Identities = 90/468 (19%), Positives = 165/468 (35%), Gaps = 40/468 (8%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
           +    L++S N +  E+  +   +L++L  L +  N +   +   +F   + LE+LDLS 
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSH 78

Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIPLSL 227
           N +  K+S       NLK L L  N      I  E GN++ L  L L          L +
Sbjct: 79  NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
             L   + L +   +      ED   L +    +L     T      I +++      L+
Sbjct: 136 AHLNISKVLLVLGETYG--EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 288 SNVLSGEIS-----------TWLFDLQGMKSLYLGGNKLKWNDNVSI---VPKCMLTELS 333
            + +   +              L     + +L L   +  WN  + I   V    +   S
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253

Query: 334 LRSCSVRGSIPLWLSTQT-----ELTFLDLSENELEGTYP---QWLSELNLGTVILSDNM 385
           + +  ++G +       +      L+   +  +          +  S +N+    +S   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT- 312

Query: 386 LTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFS--GHVPKSI 442
               +             L  S N  +  + E  G  T +  L+L  N       + +  
Sbjct: 313 --RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370

Query: 443 SNIYRLLVLDLSNNSFSGEFPAFGSDSLV--GHVDISSNRFSGEVPSSFGVTILMLSLSE 500
           + +  L  LD+S NS S +              +++SSN  +  +       I +L L  
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHS 430

Query: 501 NKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRN 548
           NK    +P+ +  L  LQ L++  N L         +L+SLQ + L  
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  131 bits (330), Expect = 3e-32
 Identities = 95/532 (17%), Positives = 180/532 (33%), Gaps = 77/532 (14%)

Query: 183 KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS 242
           +    L +  N I     ++I +L+ L  L +  N+            ++LE LDL  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 243 LSGEIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD 301
           L  +I        N+  L LS NA     I +   NM++L  L L +  L       +  
Sbjct: 81  LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 302 LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSEN 361
           L   K L + G      ++   +       L +   + +    +   +   +  L+LS  
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 362 ELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQS 421
           +      +    L++   + ++  L+           N+     S       +  T    
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLS------NLTLNNIETTWNSFIRILQLVWHTTVWY 251

Query: 422 TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRF 481
            S+  + L           S +++  L +  + ++ F     ++  +             
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFS---------- 300

Query: 482 SGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSL 541
                    + I   ++S  +    L    S +S   HLD  +N LT         L+ L
Sbjct: 301 --------NMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350

Query: 542 QVLNLRNTALE--GSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTL 599
           + L L+   L+    I +  + + SLQ LD+S N++                        
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK------------------- 391

Query: 600 PEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLN 659
               S+   +  L                      ++S+N L+  I   L     +K L+
Sbjct: 392 KGDCSWTKSLLSL----------------------NMSSNILTDTIFRCLPPR--IKVLD 427

Query: 660 LSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
           L  N+++ +IP     LE L+ L+++ N L       F +L  L  ++L  N
Sbjct: 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  129 bits (325), Expect = 9e-32
 Identities = 97/511 (18%), Positives = 180/511 (35%), Gaps = 77/511 (15%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
            +D  +N L   +P+D+      TIL +S N ++      I +++KL  L +  N +   
Sbjct: 4   LVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59

Query: 295 ISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW--LSTQT 351
           +   +F   Q ++ L L  NKL     +S  P   L  L L   +   ++P+       +
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV---KISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMS 115

Query: 352 ELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLF----ESRNLSVLVLSR 407
           +L FL LS   LE +    ++ LN+  V+L      G    P       + +L ++  + 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 408 NNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRL------LVLDLSNNSFSGE 461
             F   L  ++    ++ +  +            +S + +L        L L+N   +  
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 462 ----FPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL-------MLSLSENKFSGQLPQN 510
                      + V +  IS+ +  G++                +  +  + F       
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDL 570
               S +   +   +          S++S    L+  N  L  ++ +   +LT L+ L L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 571 SNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAI 630
             N L                    L  + E+ +    +Q L                  
Sbjct: 356 QMNQL------------------KELSKIAEMTTQMKSLQQL------------------ 379

Query: 631 YSLMDLSNNQL-SGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL 689
               D+S N +   E        K L SLN+S N L   I         ++ LDL  N +
Sbjct: 380 ----DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKI 433

Query: 690 SGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
              IP+   KL+ L  L +++N+L   +P+ 
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQLK-SVPDG 462

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (320), Expect = 5e-31
 Identities = 99/555 (17%), Positives = 181/555 (32%), Gaps = 80/555 (14%)

Query: 138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG 197
             +D   N L   +P  L   +    L++S N I    +S +  L  L+ LI+  N IQ 
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPEDIGTLAN 256
              +       L  L L  NK      +S      L+ LDL  N+  +  I ++ G ++ 
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           +  L LS   L  +    I ++     L +       +       LQ   +  L      
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESLHIVFPT 174

Query: 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNL 376
             +   I+   + T  +L   +++  +     +        L  N         LS L L
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN-------PKLSNLTL 227

Query: 377 GTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG 436
             +  + N     L   L     +    +S     G                        
Sbjct: 228 NNIETTWNSFIRILQ--LVWHTTVWYFSISNVKLQG-------------------QLDFR 266

Query: 437 HVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILML 496
               S +++  L +  + ++ F     ++  +                      + I   
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSN------------------MNIKNF 307

Query: 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALE--GS 554
           ++S  +    L    S +S   HLD  +N LT         L+ L+ L L+   L+    
Sbjct: 308 TVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365

Query: 555 ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIV 614
           I +  + + SLQ LD+S N++                            S+   +  L +
Sbjct: 366 IAEMTTQMKSLQQLDISQNSVSYDEK-------------------KGDCSWTKSLLSLNM 406

Query: 615 NWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFG 674
           +       +         ++DL +N++   IP  +  L+ L+ LN++ NQL+      F 
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 675 NLEILETLDLSHNSL 689
            L  L+ + L  N  
Sbjct: 466 RLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 55/315 (17%), Positives = 109/315 (34%), Gaps = 26/315 (8%)

Query: 61  NSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYN 120
                     +    +   S     L+ N      SI+  +   P     +L  ++ ++N
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 121 SMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-----NLRYLEFLDLSANAIEGKL 175
           S    +        T + Y  + +  L G +  + F     +L+ L    + ++      
Sbjct: 236 SF---IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ 292

Query: 176 SSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLET 235
           S       N+       +  +         ++    L    N  +  +  +   L +LET
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 236 LDLQRNSLSGEIPEDIG---TLANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVL 291
           L LQ N L  E+ +       + ++  L +S N+++    +        L++L + SN+L
Sbjct: 353 LILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM-----LTELSLRSCSVRGSIPLW 346
           +  I   L     +K L L  NK+        +PK +     L EL++ S  ++      
Sbjct: 412 TDTIFRCL--PPRIKVLDLHSNKI------KSIPKQVVKLEALQELNVASNQLKSVPDGI 463

Query: 347 LSTQTELTFLDLSEN 361
               T L  + L  N
Sbjct: 464 FDRLTSLQKIWLHTN 478

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (329), Expect = 2e-32
 Identities = 74/307 (24%), Positives = 123/307 (40%), Gaps = 11/307 (3%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDDN 193
           T    LDL  N +      +  +  +LE L+L+ N +   +       L NL+ L L  N
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSN 90

Query: 194 LIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI- 251
            ++  IP  +   L+NL KL + +NK    +      L  L++L++  N L   I     
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAF 148

Query: 252 GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYL 310
             L ++  L L    LT    +++ ++  L+ LRL    ++  I  + F  L  +K L +
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEI 207

Query: 311 GGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQW 370
                      + +    LT LS+  C++     L +     L FL+LS N +       
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267

Query: 371 LSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLM 428
           L EL  L  + L    L   + P  F     L VL +S N  +           ++  L+
Sbjct: 268 LHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326

Query: 429 LSSNNFS 435
           L SN  +
Sbjct: 327 LDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  130 bits (328), Expect = 3e-32
 Identities = 74/355 (20%), Positives = 126/355 (35%), Gaps = 58/355 (16%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
                LDL  N ++  +    FA+   L  L+L +N +  ++    F NL  L  L L +
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89

Query: 169 NAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLS 226
           N ++  +   V  GL NL +L + +N I   +   +  +L NL  L +  N        +
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147

Query: 227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRL 286
              L  LE L L++ +L+    E +  L  + +L L +  +      S + + +L  L +
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207

Query: 287 DSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346
                   ++        + SL +    L      + VP   +  L              
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNL------TAVPYLAVRHL-------------- 247

Query: 347 LSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLV 404
                 L FL+LS N +       L EL  L  + L    L   + P  F     L VL 
Sbjct: 248 ----VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLN 302

Query: 405 LSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFS 459
           +S N  +  L E++                         ++  L  L L +N  +
Sbjct: 303 VSGNQLT-TLEESV-----------------------FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  128 bits (323), Expect = 1e-31
 Identities = 72/341 (21%), Positives = 121/341 (35%), Gaps = 50/341 (14%)

Query: 378 TVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH 437
            V+        ++P  +       +L L +N       +       +  L L+ N  S  
Sbjct: 15  AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 438 VPKSISNIYRLLVLDLSNNSFSG-EFPAFGSDSLVGHVDISSNRFSGEVPSSFG--VTIL 494
            P + +N++ L  L L +N         F   S +  +DIS N+    +   F     + 
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS 554
            L + +N       +  S L+ L+ L L   NLT      LS L  L VL LR+  +   
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 555 ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIV 614
                  L  L++L++S+   L  +  +                                
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNC------------------------------- 220

Query: 615 NWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPS-SLGSLKGLKSLNLSYNQLQGNIPSTF 673
                  GL+  SL       +++  L+  +P  ++  L  L+ LNLSYN +     S  
Sbjct: 221 -----LYGLNLTSL------SITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 674 GNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
             L  L+ + L    L+   P  F  L  L  L +S N+L+
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (310), Expect = 6e-30
 Identities = 78/348 (22%), Positives = 131/348 (37%), Gaps = 37/348 (10%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
            +   R      +PE I       +L L  N +         +   L  L L+ N++S  
Sbjct: 15  AVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-A 70

Query: 295 ISTWLF-DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTEL 353
           +    F +L  +++L L  N+L       ++P  + T LS                   L
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRL------KLIPLGVFTGLS------------------NL 106

Query: 354 TFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFS 411
           T LD+SEN++         +L NL ++ + DN L   +    F    +L  L L + N +
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

Query: 412 GELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP--AFGSDS 469
               E +     ++VL L   N +     S   +YRL VL++S+  +            +
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 470 LVGHVDISSNRFSGEVPSSF-GVTIL-MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNL 527
           L   + I+    +     +   +  L  L+LS N  S      L  L  LQ + L    L
Sbjct: 226 LT-SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 528 TGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575
               P     L+ L+VLN+    L         ++ +L+ L L +N L
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 76/383 (19%), Positives = 138/383 (36%), Gaps = 70/383 (18%)

Query: 336 SCSVRG--SIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPP 392
            C  +   ++P  + T+T    LDL +N ++       +   +L  + L++N+++ ++ P
Sbjct: 17  LCHRKRFVAVPEGIPTET--RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEP 73

Query: 393 PLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVL 451
             F +  NL  L L  N             +++  L +S N     +     ++Y L  L
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 452 DLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNL 511
           ++ +N                   IS   FSG        ++  L+L +   +    + L
Sbjct: 134 EVGDNDLV---------------YISHRAFSG------LNSLEQLTLEKCNLTSIPTEAL 172

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS 571
           S+L  L  L L   N+         +L  L+VL + +     ++T       +L  L ++
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIY 631
           + NL                  + +P         V ++ L                   
Sbjct: 233 HCNL------------------TAVP--YLAVRHLVYLRFL------------------- 253

Query: 632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
              +LS N +S    S L  L  L+ + L   QL    P  F  L  L  L++S N L+ 
Sbjct: 254 ---NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

Query: 692 KIPQTFAKLQQLTSLYLSNNKLS 714
                F  +  L +L L +N L+
Sbjct: 311 LEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (278), Expect = 8e-26
 Identities = 69/364 (18%), Positives = 118/364 (32%), Gaps = 66/364 (18%)

Query: 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLT 387
              L L    ++       ++   L  L+L+EN +    P   + L NL T+ L  N L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 388 GSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIY 446
             +P  +F    NL+ L +S N     L        ++  L +  N+      ++ S + 
Sbjct: 94  -LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 447 RLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQ 506
            L  L L   + +                I +   S  +       +++L L     +  
Sbjct: 153 SLEQLTLEKCNLT---------------SIPTEALSH-LHG-----LIVLRLRHLNINAI 191

Query: 507 LPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQ 566
              +   L  L+ L++                 +L  L++ +  L       + +L  L+
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 567 ILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSK 626
            L+LS N +     S    L         L  +                           
Sbjct: 252 FLNLSYNPISTIEGSMLHELLR-------LQEI--------------------------- 277

Query: 627 SLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSH 686
                    L   QL+   P +   L  L+ LN+S NQL     S F ++  LETL L  
Sbjct: 278 --------QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 687 NSLS 690
           N L+
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 2e-23
 Identities = 53/250 (21%), Positives = 99/250 (39%), Gaps = 26/250 (10%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
            V     RF   VP        +L L +N+         ++   L+ L+L++N ++   P
Sbjct: 15  AVLCHRKRFV-AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDT 592
              + L +L+ L LR+  L+       + L++L  LD+S N ++  +   F +L      
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY----- 128

Query: 593 PSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA-IYSL--MDLSNNQLSGEIPSSL 649
                           ++ L V   N    +S ++ + + SL  + L    L+     +L
Sbjct: 129 ---------------NLKSLEVG-DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172

Query: 650 GSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLS 709
             L GL  L L +  +      +F  L  L+ L++SH      +         LTSL ++
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232

Query: 710 NNKLSGRIPE 719
           +  L+  +P 
Sbjct: 233 HCNLT-AVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 12/138 (8%)

Query: 86  LDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN 145
           L++++   LD++  +          +L +L +++ ++   VP     +L  L +L+L  N
Sbjct: 205 LEISHWPYLDTMTPN-----CLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 146 NLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI 203
            ++ +I   +   L  L+ + L    +   +      GL  L+ L +  N +   +   +
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESV 315

Query: 204 -GNLTNLHKLSLRQNKFS 220
             ++ NL  L L  N  +
Sbjct: 316 FHSVGNLETLILDSNPLA 333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (317), Expect = 5e-32
 Identities = 58/327 (17%), Positives = 114/327 (34%), Gaps = 21/327 (6%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
                  ++ +S++ +   +   +   +  LDL  N L+    + L     LE L+LS+N
Sbjct: 10  NRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ 229
            +    +  +  L  L+ L L++N +Q     E+    ++  L    N  S    +S  +
Sbjct: 69  VLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR---VSCSR 118

Query: 230 LRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDS 288
            +  + + L  N ++     D G  + +  L L  N +      +   +   L  L L  
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 289 NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS 348
           N +  ++   +     +K+L L  NKL +           +T +SLR+  +   I   L 
Sbjct: 179 NFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 349 TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRN 408
               L   DL  N       +     N     ++   +   L     E   +  L     
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGA 293

Query: 409 NFSGELPETIGQSTSVMVLMLSSNNFS 435
               +LP          ++ L  ++  
Sbjct: 294 YCCEDLPAPFADR----LIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (282), Expect = 3e-27
 Identities = 68/357 (19%), Positives = 115/357 (32%), Gaps = 61/357 (17%)

Query: 375 NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNN 433
                 ++D+ L       L +S  N+  L LS N  S      +   T + +L LSSN 
Sbjct: 11  RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 434 FSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTI 493
                   + ++  L  LDL+NN              +  +  ++N  S  V  S G   
Sbjct: 70  LYE--TLDLESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS-RVSCSRGQGK 122

Query: 494 LMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG-EFPAFLSQLSSLQVLNLRNTALE 552
             + L+ NK +     +    S +Q+LDL  N +    F    +   +L+ LNL+   + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI- 181

Query: 553 GSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDL 612
                G      L+ LDLS+N L   +   F +  G                    +  +
Sbjct: 182 -YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG--------------------VTWI 219

Query: 613 IVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQ-GNIPS 671
                                  L NN+L   I  +L   + L+  +L  N    G +  
Sbjct: 220 ----------------------SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256

Query: 672 TFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQID 728
            F   + ++T+            +    +  L                +P  DR I 
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL----GHYGAYCCEDLPAPFADRLIA 309

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  110 bits (276), Expect = 1e-26
 Identities = 64/335 (19%), Positives = 123/335 (36%), Gaps = 21/335 (6%)

Query: 150 SIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNL 209
           +I     N    +   ++ ++++  L+S      N+K+L L  N +     A++   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 HKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG 269
             L+L  N       L L  L  L TLDL  N +      ++    +I  L  +NN ++ 
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 270 AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC-M 328
            +  S         + L +N ++            ++ L L  N++   +   +      
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTG 388
           L  L+L+   +   +   +    +L  LDLS N+L    P++ S   +  + L +N L  
Sbjct: 171 LEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV- 227

Query: 389 SLPPPLFESRNLSVLVLSRNNFS-GELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYR 447
            +   L  S+NL    L  N F  G L +   ++  V  +   +      +         
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK---KLTGQNEEECT 284

Query: 448 LLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFS 482
           +  L         + PA  +D L   + +  +   
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRL---IALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (275), Expect = 2e-26
 Identities = 48/318 (15%), Positives = 95/318 (29%), Gaps = 78/318 (24%)

Query: 398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNS 457
               +  ++ ++    L      + +V  L LS N  S      ++   +L +L+LS+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 458 FSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLL 517
              E     S S +  +D+++N                               L     +
Sbjct: 70  LY-ETLDLESLSTLRTLDLNNNYVQ---------------------------ELLVGPSI 101

Query: 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG 577
           + L   +NN++       S+    + + L N  +           + +Q LDL  N +  
Sbjct: 102 ETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 578 -KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDL 636
                   +   +                    + L                      +L
Sbjct: 159 VNFAELAASSDTL--------------------EHL----------------------NL 176

Query: 637 SNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQT 696
             N +  ++   +     LK+L+LS N+L   +   F +   +  + L +N L   I + 
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA 232

Query: 697 FAKLQQLTSLYLSNNKLS 714
               Q L    L  N   
Sbjct: 233 LRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 42/214 (19%), Positives = 79/214 (36%), Gaps = 15/214 (7%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
              +  + +L TLDL+ N +              +  L   +NN++  +          +
Sbjct: 73  TLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNNIS-RVSCSRGQG--KK 123

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSG 221
            + L+ N I             ++ L L  N I          +   L  L+L+ N    
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 222 GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKL 281
            +    +   KL+TLDL  N L+  +  +  + A +T ++L NN L   I +++R    L
Sbjct: 183 DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNL 239

Query: 282 VTLRLDSNVLS-GEISTWLFDLQGMKSLYLGGNK 314
               L  N    G +  +    Q ++++     K
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 56/308 (18%), Positives = 102/308 (33%), Gaps = 78/308 (25%)

Query: 414 LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGH 473
           + E         +  ++ ++    +     + + +  LDLS N  S              
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-------------- 47

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
             IS+   +          + +L+LS N        +L +LS L+ LDL++N +      
Sbjct: 48  -QISAADLAP------FTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ----- 93

Query: 534 FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTP 593
            L    S++ L+  N  +   ++   S     + + L+NN +        G    +    
Sbjct: 94  ELLVGPSIETLHAANNNIS-RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ--- 147

Query: 594 SILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSG-EIPSSLGSL 652
                                                   +DL  N++          S 
Sbjct: 148 ---------------------------------------YLDLKLNEIDTVNFAELAASS 168

Query: 653 KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNK 712
             L+ LNL YN +  ++         L+TLDLS N L+  +   F     +T + L NNK
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 713 LSGRIPES 720
           L   I ++
Sbjct: 226 LV-LIEKA 232

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 48/321 (14%), Positives = 103/321 (32%), Gaps = 24/321 (7%)

Query: 351 TELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRN 408
                  ++++ L+           N+  + LS N L+  +          L +L LS N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN 68

Query: 409 NFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSD 468
               E  + +   +++  L L++N         +     +  L  +NN+ S         
Sbjct: 69  VLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQ 120

Query: 469 SLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSG-QLPQNLSNLSLLQHLDLHDN 525
               ++ +++N+ +       G    +  L L  N+       +  ++   L+HL+L  N
Sbjct: 121 GKK-NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 526 NLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGN 585
            +  +        + L+ L+L +  L   +     +   +  + L NN  L  I  +   
Sbjct: 180 FIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRF 235

Query: 586 LQG-----MIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQ 640
            Q      +        TL + FS    +Q +         G + +   + +L       
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

Query: 641 LSGEIPSSLGSLKGLKSLNLS 661
                      L  L   +  
Sbjct: 296 CEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 49/161 (30%)

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI 613
           +I +   N    +I  +++++L   + S   +                       +++L 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAW--------------------NVKEL- 39

Query: 614 VNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTF 673
                                DLS N LS    + L     L+ LNLS N L        
Sbjct: 40  ---------------------DLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDL 76

Query: 674 GNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
            +L  L TLDL++N +             + +L+ +NN +S
Sbjct: 77  ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  128 bits (324), Expect = 3e-31
 Identities = 91/612 (14%), Positives = 182/612 (29%), Gaps = 78/612 (12%)

Query: 105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEF 163
               + +   +    ++M+ ++P     +  ++  L+L D  +   I +  F     ++ 
Sbjct: 46  EDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQK 103

Query: 164 LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGG 222
           L +  NAI          +  L  L+L+ N +   +P  I  N   L  LS+  N     
Sbjct: 104 LYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERI 162

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
              +      L+ L L  N L+  +   +  + ++    +S N L+     ++     + 
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVE 214

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342
            L    N ++  +   +     +  L L  N               LT+ +         
Sbjct: 215 ELDASHNSIN-VVRGPVN--VELTILKLQHNN--------------LTDTA--------- 248

Query: 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFES-RNLS 401
              WL     L  +DLS NELE                         +    F   + L 
Sbjct: 249 ---WLLNYPGLVEVDLSYNELE------------------------KIMYHPFVKMQRLE 281

Query: 402 VLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE 461
            L +S N     L        ++ VL LS N+   HV ++     RL  L L +NS    
Sbjct: 282 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-T 338

Query: 462 FPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLD 521
                  +L  ++ +S N +      +    +   ++ +        Q+      L+H  
Sbjct: 339 LKLSTHHTLK-NLTLSHNDWDCNSLRALFRNVARPAVDDA------DQHCKIDYQLEHGL 391

Query: 522 LHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPS 581
               +        L  ++   V+     A          N        ++    +    +
Sbjct: 392 CCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGN 451

Query: 582 SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQL 641
                +       +     E       +Q L      + R        +    D  N   
Sbjct: 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVF 511

Query: 642 SGEIPSSLGSL-KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKL 700
           +         L +       +  + +        N+ + + LD      +    +T  K 
Sbjct: 512 THLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKR 571

Query: 701 QQLTSLYLSNNK 712
           Q++  L    N+
Sbjct: 572 QKVKQLEAKKNR 583

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (296), Expect = 8e-28
 Identities = 83/526 (15%), Positives = 177/526 (33%), Gaps = 68/526 (12%)

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT 258
           I + +      + + +             + L   + +  + +++       + +   + 
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 259 ILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLYLGGNKLKW 317
           +L L++  +      +      +  L +  N +   +   +F ++  +  L L  N L  
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-- 135

Query: 318 NDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NL 376
               S +P+ +                       +LT L +S N LE           +L
Sbjct: 136 ----SSLPRGIFHNT------------------PKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 377 GTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG 436
             + LS N LT  +   L    +L    +S N  S     T+    +V  L  S N+ + 
Sbjct: 174 QNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN- 224

Query: 437 HVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF-GVTIL- 494
            V   ++    L +L L +N+ + +     +   +  VD+S N     +   F  +  L 
Sbjct: 225 VVRGPVNV--ELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS 554
            L +S N+    L      +  L+ LDL  N+L         Q   L+ L L + ++  +
Sbjct: 282 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-T 338

Query: 555 ITDGLSNLTSLQILDLSNNNL----LGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQ 610
           +   LS   +L+ L LS+N+     L  +  +             +    +      +++
Sbjct: 339 LK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA--------VDDADQHCKIDYQLE 388

Query: 611 DLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP 670
             +   +      S K      L  ++   +  ++  + G      ++N   +       
Sbjct: 389 HGLCCKE------SDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQ 442

Query: 671 STFGNLEILETLDLSHNSLSGKIPQ----TFAKLQQLTSLYLSNNK 712
                L+  E L+   N L  ++ Q       + Q L  L+   + 
Sbjct: 443 QGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.8 bits (246), Expect = 1e-21
 Identities = 65/314 (20%), Positives = 109/314 (34%), Gaps = 34/314 (10%)

Query: 404 VLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSG-EF 462
           V  R      +   +        + +       +       +    ++   N++      
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 463 PAFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPQNLSNLSLLQHL 520
               S   V  ++++  +       +F    TI  L +  N      P    N+ LL  L
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128

Query: 521 DLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIP 580
            L  N+L+            L  L++ N  LE    D     TSLQ L LS+N L     
Sbjct: 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188

Query: 581 SSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQ 640
           S   +L     + ++L TL      P+ +++L                      D S+N 
Sbjct: 189 SLIPSLFHANVSYNLLSTLAI----PIAVEEL----------------------DASHNS 222

Query: 641 LSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKL 700
           ++  +         L  L L +N L     +   N   L  +DLS+N L   +   F K+
Sbjct: 223 IN-VVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277

Query: 701 QQLTSLYLSNNKLS 714
           Q+L  LY+SNN+L 
Sbjct: 278 QRLERLYISNNRLV 291

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (315), Expect = 4e-31
 Identities = 68/353 (19%), Positives = 126/353 (35%), Gaps = 48/353 (13%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
            +   +    ++M+ ++P     +  ++  L+L D  +   I +  F     ++ L +  
Sbjct: 45  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102

Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSL 227
           NAI          +  L  L+L+ N +   +P  I  N   L  LS+  N        + 
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
                L+ L L  N L+  +   +  + ++    +S N L+     ++     +  L   
Sbjct: 162 QATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDAS 213

Query: 288 SNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL 347
            N ++  +   +     +  L L  N               LT+ +            WL
Sbjct: 214 HNSIN-VVRGPVN--VELTILKLQHNN--------------LTDTA------------WL 244

Query: 348 STQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLS 406
                L  +DLS NELE        ++  L  + +S+N L  +L         L VL LS
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303

Query: 407 RNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFS 459
            N+    +     Q   +  L L  N+    +   +S  + L  L LS+N + 
Sbjct: 304 HNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 2e-29
 Identities = 68/381 (17%), Positives = 137/381 (35%), Gaps = 46/381 (12%)

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT 258
           I + +      + + +             + L   + +  + +++       + +   + 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 259 ILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLYLGGNKLKW 317
           +L L++  +      +      +  L +  N +   +   +F ++  +  L L  N L  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-- 129

Query: 318 NDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NL 376
               S +P+ +                       +LT L +S N LE           +L
Sbjct: 130 ----SSLPRGIFHNT------------------PKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 377 GTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG 436
             + LS N LT  +   L    +L    +S N  S     T+    +V  L  S N+ + 
Sbjct: 168 QNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN- 218

Query: 437 HVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF-GVTIL- 494
            V   ++    L +L L +N+ + +     +   +  VD+S N     +   F  +  L 
Sbjct: 219 VVRGPVNV--ELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS 554
            L +S N+    L      +  L+ LDL  N+L         Q   L+ L L + ++  +
Sbjct: 276 RLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-T 332

Query: 555 ITDGLSNLTSLQILDLSNNNL 575
           +   LS   +L+ L LS+N+ 
Sbjct: 333 LK--LSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (290), Expect = 6e-28
 Identities = 74/398 (18%), Positives = 137/398 (34%), Gaps = 62/398 (15%)

Query: 320 NVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGT 378
           + ++   C+  ++ +   +          T      +    + +       L     +  
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 379 VILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH 437
           + L+D  +   +    F     +  L +  N      P        + VL+L  N+ S  
Sbjct: 74  LNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 438 VPKSISNIYRLLVLDLSNNSFSG-EFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILML 496
                 N  +L  L +SNN+    E   F + + + ++ +SSNR +  V  S   ++   
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHA 191

Query: 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT 556
           ++S N  S      L+    ++ LD   N++             L +L L++  L  + T
Sbjct: 192 NVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNL--TDT 241

Query: 557 DGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNW 616
             L N   L  +DLS N L   +   F  +Q                     ++ L    
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ--------------------RLERL---- 277

Query: 617 KNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL 676
                              +SNN+L   +      +  LK L+LS+N L  ++       
Sbjct: 278 ------------------YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 677 EILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           + LE L L HNS+   +    +    L +L LS+N   
Sbjct: 318 DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  115 bits (290), Expect = 7e-28
 Identities = 73/384 (19%), Positives = 132/384 (34%), Gaps = 32/384 (8%)

Query: 150 SIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNL 209
            I S L        + +     +         L N K +   ++ ++    A + +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 210 HKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALT 268
             L+L   +       +      ++ L +  N++   +P  +   +  +T+L L  N L+
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

Query: 269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLYLGGNKLK----------- 316
                   N  KL TL + +N L   I    F     +++L L  N+L            
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189

Query: 317 -----WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWL 371
                +N   ++     + EL     S+   +        ELT L L  N L  T   WL
Sbjct: 190 HANVSYNLLSTLAIPIAVEELDASHNSIN-VVR--GPVNVELTILKLQHNNL--TDTAWL 244

Query: 372 SEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLML 429
                L  V LS N L   +    F   + L  L +S N     L        ++ VL L
Sbjct: 245 LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDL 302

Query: 430 SSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF 489
           S N+   HV ++     RL  L L +NS           +L  ++ +S N +      + 
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLK-NLTLSHNDWDCNSLRAL 359

Query: 490 GVTILMLSLSENKFSGQLPQNLSN 513
              +   ++ +     ++   L +
Sbjct: 360 FRNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.0 bits (216), Expect = 2e-18
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 20/212 (9%)

Query: 105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFL 164
            +  I SL   ++SYN +      +  A    +  LD   N++N  +   +     L  L
Sbjct: 181 DLSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN-VVRGPVN--VELTIL 231

Query: 165 DLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGI 223
            L  N +    ++ +     L ++ L  N ++ +I       +  L +L +  N+    +
Sbjct: 232 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-AL 287

Query: 224 PLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVT 283
            L    +  L+ LDL  N L   +  +      +  L L +N++   +  S      L  
Sbjct: 288 NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKN 343

Query: 284 LRLDSNVLSGEISTWLFDLQGMKSLYLGGNKL 315
           L L  N         LF  + +    +     
Sbjct: 344 LTLSHNDWDCNSLRALF--RNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 7/70 (10%), Positives = 23/70 (32%)

Query: 645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT 704
           I S+L        +++               L   + +   ++++           +Q+ 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 705 SLYLSNNKLS 714
            L L++ ++ 
Sbjct: 73  LLNLNDLQIE 82

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (302), Expect = 2e-28
 Identities = 80/376 (21%), Positives = 139/376 (36%), Gaps = 62/376 (16%)

Query: 375 NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
               + + ++ LT +LP  L    +++ LV+  NN +  LP    +  +   L +S N  
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRT---LEVSGNQL 93

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL 494
           +  +P     +  L +                                  +PS     + 
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLP------------------------ALPSG----LC 124

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS 554
            L +  N+ +  LP     L   Q L + DN L    PA  S+L  L   N + T+L   
Sbjct: 125 KLWIFGNQLT-SLPVLPPGL---QELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPML 179

Query: 555 ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIV 614
            +        LQ L +S+N L   +P+    L  +    + L +LP     P  +++LIV
Sbjct: 180 PS-------GLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIV 228

Query: 615 NWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFG 674
           +  N    L      +  L  +S N+L+  +P     L    SL++  NQL   +P +  
Sbjct: 229 S-GNRLTSLPVLPSELKEL-MVSGNRLT-SLPMLPSGLL---SLSVYRNQLT-RLPESLI 281

Query: 675 NLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYAN 734
           +L    T++L  N LS    +T   L+++TS    +  +           R+   +  A 
Sbjct: 282 HLSSETTVNLEGNPLS---ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAA 338

Query: 735 NSGLCGMQIQVVCPED 750
              L   +     P D
Sbjct: 339 ADWLVPAREGEPAPAD 354

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  111 bits (278), Expect = 1e-25
 Identities = 69/346 (19%), Positives = 113/346 (32%), Gaps = 66/346 (19%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
            + TL +  N++   +P    A    L  L++  N L  S+P     L  L         
Sbjct: 62  HITTLVIPDNNLT-SLP----ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTH 115

Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
           +        A    L +L +  N +   +P     L  L    +  N+ +  +P    +L
Sbjct: 116 LP-------ALPSGLCKLWIFGNQLT-SLPVLPPGLQELS---VSDNQLA-SLPALPSEL 163

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290
            K   L    N L+  +P     L     L++S+N L  ++P     + KL         
Sbjct: 164 CK---LWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS 215

Query: 291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350
           L    S       G+K L + GN+L                          S+P+     
Sbjct: 216 LPALPS-------GLKELIVSGNRLT-------------------------SLPVLP--- 240

Query: 351 TELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNF 410
           +EL  L +S N L  + P   S   L ++ +  N LT  LP  L    + + + L  N  
Sbjct: 241 SELKELMVSGNRLT-SLPMLPS--GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

Query: 411 SGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNN 456
           S E      +  +                 S     R L L  ++ 
Sbjct: 297 S-ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (275), Expect = 4e-25
 Identities = 74/371 (19%), Positives = 126/371 (33%), Gaps = 61/371 (16%)

Query: 351 TELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNF 410
                L++ E+ L  T P  L   ++ T+++ DN LT SLP        L  L +S N  
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPA-HITTLVIPDNNLT-SLPALP---PELRTLEVSGNQL 93

Query: 411 SGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSL 470
           +  LP        + +          H+P   S    L  L +  N  +           
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLT----HLPALPSG---LCKLWIFGNQLTSLPVLPPG--- 142

Query: 471 VGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE 530
           +  + +S N+ +  +P+     +  L    N+ +  LP   S L   Q L + DN L   
Sbjct: 143 LQELSVSDNQLA-SLPALPS-ELCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-S 195

Query: 531 FPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMI 590
            P   S+L  L   N R T+L    +        L+ L +S N L   +P     L+ ++
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPALPS-------GLKELIVSGNRL-TSLPVLPSELKELM 247

Query: 591 DTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLG 650
            + + L +LP           L+                    + +  NQL+  +P SL 
Sbjct: 248 VSGNRLTSLPM------LPSGLLS-------------------LSVYRNQLT-RLPESLI 281

Query: 651 SLKGLKSLNLSYNQLQGNIPSTFGNLEILETLD---LSHNSLSGKIPQTFAKLQQLTSLY 707
            L    ++NL  N L          +          +  +      P+    L    + +
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

Query: 708 LSNNKLSGRIP 718
           L   +     P
Sbjct: 342 LVPAREGEPAP 352

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (267), Expect = 4e-24
 Identities = 74/388 (19%), Positives = 140/388 (36%), Gaps = 46/388 (11%)

Query: 225 LSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTL 284
           +          L++  + L+  +P+ +    +IT L + +N LT ++P        L TL
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPE---LRTL 86

Query: 285 RLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP 344
            +  N L+  +      L  +         L        +P   L +L +    +  S+P
Sbjct: 87  EVSGNQLT-SLPVLPPGLLELSIFSNPLTHL------PALPSG-LCKLWIFGNQLT-SLP 137

Query: 345 LWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLV 404
           +       L  L +S+N+L  + P   S   L  +   +N LT SLP        L  L 
Sbjct: 138 VLP---PGLQELSVSDNQLA-SLPALPS--ELCKLWAYNNQLT-SLPM---LPSGLQELS 187

Query: 405 LSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPA 464
           +S N  +  LP    +      L   +N  +  +P   S    L  L +S N  +     
Sbjct: 188 VSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSG---LKELIVSGNRLTSLPVL 239

Query: 465 FGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHD 524
                 +  + +S NR +  +P      +L LS+  N+ + +LP++L +LS    ++L  
Sbjct: 240 PSE---LKELMVSGNRLT-SLPMLPS-GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 525 NNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG 584
           N L+      L +++S    +      + +         +L             +P+  G
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH-----LAAADWLVPAREG 348

Query: 585 NLQGMIDTPSILPTLPEIFSFPVEIQDL 612
                 D   +        +F + +  L
Sbjct: 349 EPA-PADRWHMFGQEDNADAFSLFLDRL 375

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  118 bits (297), Expect = 2e-28
 Identities = 98/474 (20%), Positives = 151/474 (31%), Gaps = 106/474 (22%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSAN 169
            +  +DLS NS+  E+  T F+ L  L +L ++       I +  F  L  L  L L  N
Sbjct: 31  HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 170 AIEGKLSSRV-AGLKNLKQLILDDNLIQG-QIPAEI-GNLTNLHKLSLRQNKFSGGIPLS 226
               +L +    GL NL+ L L    + G  +       LT+L  L LR N      P S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 227 LLQ-LRKLETLDLQRNSLSGEIPEDI---GTLANITILALSNNALTGAIPQSIRNMTKLV 282
               +R+   LDL  N +   I E+        + T+L LS+  L               
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITL--------------- 192

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342
              ++   L  E     F    + +L L GN  K +           T++     S   +
Sbjct: 193 -QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS---N 248

Query: 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSV 402
                S+     F D      +G     +   +L     S + +  +L   +F       
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDL-----SKSKIF-ALLKSVFS------ 296

Query: 403 LVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEF 462
                              T +  L L+ N  +     +   +  LL L+LS N      
Sbjct: 297 -----------------HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG--- 336

Query: 463 PAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDL 522
                                             S+    F          L  L+ LDL
Sbjct: 337 ----------------------------------SIDSRMFEN--------LDKLEVLDL 354

Query: 523 HDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNL 575
             N++          L +L+ L L    L+ S+ DG    LTSLQ + L  N  
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (278), Expect = 5e-26
 Identities = 72/358 (20%), Positives = 124/358 (34%), Gaps = 37/358 (10%)

Query: 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDL 166
           R++ L  L +   +    +    F  L+ L  L L  N     + +  F  L  LE L L
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVLTL 110

Query: 167 SANAI-EGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGI 223
           +   +    LS      L +L+ L+L DN I+   PA    N+   H L L  NK     
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 224 PLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVT 283
              LL  +      L+              L++IT+  ++   L      +    T + T
Sbjct: 171 EEDLLNFQGKHFTLLR--------------LSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 284 LRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSI 343
           L L  N     ++   FD      +        +N   S             + + +G  
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF---KDPDNFTFKG-- 271

Query: 344 PLWLSTQTELTFLDLSEN---ELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFES-RN 399
                  + +   DLS++    L  +     +  +L  + L+ N +   +    F    +
Sbjct: 272 ----LEASGVKTCDLSKSKIFALLKSVFSHFT--DLEQLTLAQNEIN-KIDDNAFWGLTH 324

Query: 400 LSVLVLSRNNFSGELPETIGQS-TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNN 456
           L  L LS+N     +   + ++   + VL LS N+      +S   +  L  L L  N
Sbjct: 325 LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  110 bits (277), Expect = 7e-26
 Identities = 71/360 (19%), Positives = 127/360 (35%), Gaps = 41/360 (11%)

Query: 368 PQWLSELNLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPE-TIGQSTSVM 425
           P  ++ ++L     S N +   L    F   ++L  L + +      +   T    +S++
Sbjct: 29  PAHVNYVDL-----SLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLI 82

Query: 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEV 485
           +L L  N F      + + +  L VL L+  +  G               +S N F    
Sbjct: 83  ILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG-------------AVLSGNFFKP-- 127

Query: 486 PSSFGVTILMLSLSENKFSGQLPQNL-SNLSLLQHLDLHDNNLT----GEFPAFLS---- 536
                 ++ ML L +N      P +   N+     LDL  N +      +   F      
Sbjct: 128 ----LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183

Query: 537 --QLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPS 594
             +LSS+ + ++    L           TS+  LDLS N     +   F +        S
Sbjct: 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 595 ILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKG 654
           ++ +            +       + +GL +  +      DLS +++   + S       
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV---KTCDLSKSKIFALLKSVFSHFTD 300

Query: 655 LKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           L+ L L+ N++     + F  L  L  L+LS N L     + F  L +L  L LS N + 
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (270), Expect = 6e-25
 Identities = 83/512 (16%), Positives = 149/512 (29%), Gaps = 143/512 (27%)

Query: 207 TNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNN 265
            +++ + L  N  +     S  +L+ L+ L +++ +    I  +    L+++ IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 266 ALTGAIPQSIRNMTKLVTLRLDSNVL-SGEISTWLFD-LQGMKSLYLGGNKLKWNDNVSI 323
                   +   +  L  L L    L    +S   F  L  ++ L L  N +K      I
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-----KI 144

Query: 324 VPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSD 383
            P      +                       LDL+ N+++                   
Sbjct: 145 QPASFFLNM------------------RRFHVLDLTFNKVK------------------- 167

Query: 384 NMLTGSLPPPLF---ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPK 440
                S+        + ++ ++L LS                      ++          
Sbjct: 168 -----SICEEDLLNFQGKHFTLLRLSSITL----------------QDMNEYWLGWEKCG 206

Query: 441 SISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSE 500
           +      +  LDLS N F  E  A      +    I S               L+LS S 
Sbjct: 207 NPFKNTSITTLDLSGNGFK-ESMAKRFFDAIAGTKIQS---------------LILSNSY 250

Query: 501 NKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGL- 559
           N  S     N  +        L  + +                 +L  + +  ++   + 
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVK--------------TCDLSKSKIF-ALLKSVF 295

Query: 560 SNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNS 619
           S+ T L+ L L+ N +                  + +      F     +  L       
Sbjct: 296 SHFTDLEQLTLAQNEI------------------NKID--DNAFWGLTHLLKL------- 328

Query: 620 KRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEIL 679
                          +LS N L         +L  L+ L+LSYN ++     +F  L  L
Sbjct: 329 ---------------NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373

Query: 680 ETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
           + L L  N L       F +L  L  ++L  N
Sbjct: 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (261), Expect = 7e-24
 Identities = 86/475 (18%), Positives = 148/475 (31%), Gaps = 126/475 (26%)

Query: 255 ANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
           A++  + LS N++      S   +  L  L+++       I    F  L  +  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 314 KLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTY--PQWL 371
           +         +       L                    L  L L++  L+G      + 
Sbjct: 90  QFL------QLETGAFNGL------------------ANLEVLTLTQCNLDGAVLSGNFF 125

Query: 372 SEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLML 429
             L +L  ++L DN +    P   F + R   VL L+ N                    +
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK----------------SI 169

Query: 430 SSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF 489
              +      K         +L LS+ +                 D++      E   + 
Sbjct: 170 CEEDLLNFQGK------HFTLLRLSSITLQ---------------DMNEYWLGWEKCGNP 208

Query: 490 --GVTILMLSLSENKFSGQLPQ---NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVL 544
               +I  L LS N F   + +   +    + +Q L L ++   G      S        
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG------SSFGHTNFK 262

Query: 545 NLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFS 604
           +  N   +G         + ++  DLS + +                    L     +FS
Sbjct: 263 DPDNFTFKGL------EASGVKTCDLSKSKI------------------FALL--KSVFS 296

Query: 605 FPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQ 664
              +++ L                       L+ N+++    ++   L  L  LNLS N 
Sbjct: 297 HFTDLEQL----------------------TLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334

Query: 665 LQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
           L       F NL+ LE LDLS+N +     Q+F  L  L  L L  N+L   +P+
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 53/281 (18%), Positives = 103/281 (36%), Gaps = 33/281 (11%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-----------NL 158
            SL  L L  N+++   P + F N+ R   LDL  N +  SI  +              L
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRL 187

Query: 159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNK 218
             +   D++   +  +         ++  L L  N  +  +     +     K+      
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 219 FSGGIPLSL---------------LQLRKLETLDLQRNSLSGEIPEDI-GTLANITILAL 262
            S  +  S                L+   ++T DL ++ +   + + +     ++  L L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTL 306

Query: 263 SNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNKLKWNDNV 321
           + N +      +   +T L+ L L  N L   I + +F+ L  ++ L L  N ++   + 
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQ 365

Query: 322 SIVPKCMLTELSLRSCSVRGSIPL-WLSTQTELTFLDLSEN 361
           S +    L EL+L +  ++ S+P       T L  + L  N
Sbjct: 366 SFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  117 bits (295), Expect = 8e-28
 Identities = 99/481 (20%), Positives = 179/481 (37%), Gaps = 48/481 (9%)

Query: 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIE 172
            L LS NS+  E+     + L+ L  L L  N +  S+   +F   + LE+LD+S N ++
Sbjct: 56  ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ 113

Query: 173 GKLSSRVAGLKNLKQLILDDNLIQGQIP--AEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
             +S     + +L+ L L  N     +P   E GNLT L  L L   KF     L +  L
Sbjct: 114 -NISCCP--MASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL 169

Query: 231 R-KLETLDLQRNSLSGEIPEDIGTLA-NITILALSNNALTGAIPQSIRNMTKLVTLR--- 285
                 LDL    + G   E +      +  L    N+L         N    + L    
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 286 --LDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSI---VPKCMLTELSLRSCSVR 340
              ++        + L     + ++ L   +  W  +V +        +  L++ + ++ 
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSE------LNLGTVILSDNMLTGSLPPPL 394
             I     T +E     L    ++     +  E        +   +LS +          
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 395 FESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLS 454
               + + L  ++N F+  + +       +  L+L  N    +  K       +  L+  
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETL 408

Query: 455 NNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNL 514
           + S +    +   D      +                +IL+L+LS N  +G + + L   
Sbjct: 409 DVSLNS-LNSHAYDRTCAWAE----------------SILVLNLSSNMLTGSVFRCLP-- 449

Query: 515 SLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNN 573
             ++ LDLH+N +    P  ++ L +LQ LN+ +  L+ S+ DG    LTSLQ + L +N
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

Query: 574 N 574
            
Sbjct: 508 P 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  116 bits (293), Expect = 2e-27
 Identities = 93/505 (18%), Positives = 175/505 (34%), Gaps = 60/505 (11%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
            +D    +L+  +P+D+        L+LS N+++      I  +++L  LRL  N +   
Sbjct: 35  MVDYSNRNLT-HVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-S 90

Query: 295 ISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRS----CSVRGSIPLWLST 349
           +   +F   Q ++ L +  N+L+   N+S  P   L  L L                   
Sbjct: 91  LDFHVFLFNQDLEYLDVSHNRLQ---NISCCPMASLRHLDLSFNDFDVLPVCKE---FGN 144

Query: 350 QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGS-LPPPLFESRNLSVLVLSRN 408
            T+LTFL LS  +        ++ L+L  ++L               +  N +VL L  +
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 409 NFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSG-------- 460
             S    +      ++  L LS+   +    + +      L    +  + +         
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264

Query: 461 ---EFPAFGSDSLVGHVDISSNRFSGEVPSSFGV-------TILMLSLSENKFSGQLPQN 510
              +   F     V +++I +   +  +             ++++  +    F       
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324

Query: 511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDL 570
            S  + +    L  ++            SS   LN        S+  G S L  LQ L L
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384

Query: 571 SNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIF----SFPVEIQDLIVNWKNSKRGLSSK 626
             N L         N   +      + +L  +     S      D    W  S   L   
Sbjct: 385 QRNGL--------KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL--- 433

Query: 627 SLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSH 686
                   +LS+N L+G +   L     +K L+L  N++  +IP    +L+ L+ L+++ 
Sbjct: 434 --------NLSSNMLTGSVFRCLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482

Query: 687 NSLSGKIPQTFAKLQQLTSLYLSNN 711
           N L       F +L  L  ++L +N
Sbjct: 483 NQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (261), Expect = 1e-23
 Identities = 82/462 (17%), Positives = 154/462 (33%), Gaps = 56/462 (12%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
            L  L LS+N ++  +    F     L YLD+  N L  +I                   
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNISCC---------------- 118

Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIP--AEIGNLTNLHKLSLRQNKFSGGIPLSLL 228
                      + +L+ L L  N     +P   E GNLT L  L L   KF     L + 
Sbjct: 119 ----------PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 229 QLR-KLETLDLQRNSLSGEIPEDIGTLA-NITILALSNNALTGAIPQSIRNMTKLVTLR- 285
            L      LDL    + G   E +      +  L    N+L         N    + L  
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 286 ----LDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSI---VPKCMLTELSLRSCS 338
                ++        + L     + ++ L   +  W  +V +        +  L++ + +
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 339 VRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSE------LNLGTVILSDNMLTGSLPP 392
           +   I     T +E     L    ++     +  E        +   +LS +        
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 393 PLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLD 452
                 + + L  ++N F+  + +       +  L+L  N    +  K       +  L+
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLE 406

Query: 453 LSNNSFSGEFPAFGSDSLVG------HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQ 506
             + S +    +   D           +++SSN  +G V       + +L L  N+    
Sbjct: 407 TLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-S 464

Query: 507 LPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRN 548
           +P+++++L  LQ L++  N L         +L+SLQ + L +
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 1e-16
 Identities = 73/387 (18%), Positives = 128/387 (33%), Gaps = 43/387 (11%)

Query: 337 CSVRG--SIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPP 393
            S R    +P  L  +T    L LS+N +       +S L  L  + LS N +  SL   
Sbjct: 38  YSNRNLTHVPKDLPPRT--KALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFH 94

Query: 394 LFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF-SGHVPKSISNIYRLLVL 451
           +F   ++L  L +S N     +        S+  L LS N+F    V K   N+ +L  L
Sbjct: 95  VFLFNQDLEYLDVSHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151

Query: 452 DLSNNSF-SGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQN 510
            LS   F   +        L                     + ++L L      G   ++
Sbjct: 152 GLSAAKFRQLDLLPVAHLHL---------------------SCILLDLVSYHIKGGETES 190

Query: 511 LSNLSL-LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILD 569
           L   +  + HL  H N+L       +S +++L  L L N  L       L    S     
Sbjct: 191 LQIPNTTVLHLVFHPNSLF-SVQVNMS-VNALGHLQLSNIKLNDENCQRLMTFLSELTRG 248

Query: 570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA 629
            +  N+  +   +         +  +           + I +L +  +  +   +    A
Sbjct: 249 PTLLNVTLQHIETTWK-----CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 630 IYSLM--DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHN 687
           + SLM   + N        +       +    LS +           +      L+ + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 688 SLSGKIPQTFAKLQQLTSLYLSNNKLS 714
             +  + Q  + L++L +L L  N L 
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 43/237 (18%), Positives = 84/237 (35%), Gaps = 11/237 (4%)

Query: 82  EVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLD 141
            V  L++ NL   + I           ++SLM   +             ++    +    
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL-YSVFAEMNIKM 335

Query: 142 LKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPA 201
           L  ++          +     FL+ + N     +    + LK L+ LIL  N ++     
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFK 394

Query: 202 EIGNLTNLHKLSLRQNKF----SGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI 257
                 N+  L           S     +      +  L+L  N L+G +   +     +
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKV 452

Query: 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
            +L L NN +  +IP+ + ++  L  L + SN L   +   +FD L  ++ ++L  N
Sbjct: 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 62/362 (17%), Positives = 117/362 (32%), Gaps = 42/362 (11%)

Query: 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAI 171
           + LDL    ++G    +     T + +L    N+L     +   N L +L+  ++  N  
Sbjct: 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233

Query: 172 EG----KLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNL---TNLHKLSLRQNKFSGGIP 224
                    S +     L  + L       +   ++        +  L++     +  I 
Sbjct: 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293

Query: 225 L-----SLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMT 279
                 S   L+ L    ++               A + I  LS +           + +
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 280 KLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSV 339
               L    NV +  +      L+ +++L L  N LK                +    + 
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK----------------NFFKVA- 396

Query: 340 RGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL--NLGTVILSDNMLTGSLPPPLFES 397
                L     + L  LD+S N L             ++  + LS NMLTGS+   L   
Sbjct: 397 -----LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--P 449

Query: 398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSI-SNIYRLLVLDLSNN 456
             + VL L  N     +P+ +    ++  L ++SN     VP  +   +  L  + L +N
Sbjct: 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

Query: 457 SF 458
            +
Sbjct: 508 PW 509

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  114 bits (288), Expect = 3e-27
 Identities = 56/251 (22%), Positives = 94/251 (37%), Gaps = 28/251 (11%)

Query: 468 DSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNL 527
            +    V  +    S EVP         L+L EN           +L  L+ L L  N++
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 528 TGEFPAFLSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNL 586
                   + L+SL  L L +  L   I  G    L+ L+ L L NN +           
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPI----------- 159

Query: 587 QGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA-IYSL--MDLSNNQLSG 643
                    +P     F+    +  L +        +S  +   +++L  ++L    +  
Sbjct: 160 -------ESIP--SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209

Query: 644 EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQL 703
           ++P+ L  L GL+ L +S N      P +F  L  L+ L + ++ +S      F  L  L
Sbjct: 210 DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 704 TSLYLSNNKLS 714
             L L++N LS
Sbjct: 269 VELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  105 bits (265), Expect = 2e-24
 Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 12/209 (5%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
             L  L L  NS++ ++    F  L  L  L+L DN L   IPS  F  L  L  L L  
Sbjct: 99  HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRN 156

Query: 169 NAIEGKLSSRV-AGLKNLKQLILDD-NLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPL 225
           N IE  + S     + +L +L L +   ++  I       L NL  L+L        +P 
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKD-MP- 212

Query: 226 SLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLR 285
           +L  L  LE L++  N      P     L+++  L + N+ ++     +   +  LV L 
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 286 LDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
           L  N LS  +   LF  L+ +  L+L  N
Sbjct: 273 LAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  102 bits (256), Expect = 3e-23
 Identities = 68/296 (22%), Positives = 107/296 (36%), Gaps = 53/296 (17%)

Query: 421 STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNR 480
           S     ++ +    S  VP+ I +      L+L  N+                  I ++ 
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPS--NTRYLNLMENNIQ---------------MIQADT 94

Query: 481 FSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSS 540
           F           + +L L  N          + L+ L  L+L DN LT         LS 
Sbjct: 95  FRHLH------HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148

Query: 541 LQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPS-SF---GNLQGMIDTPSI 595
           L+ L LRN  +E SI     + + SL  LDL     L  I   +F    NL+ +      
Sbjct: 149 LRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 596 LPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGL 655
           +  +P   +  V +++L                      ++S N      P S   L  L
Sbjct: 208 IKDMPN-LTPLVGLEEL----------------------EMSGNHFPEIRPGSFHGLSSL 244

Query: 656 KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
           K L +  +Q+     + F  L  L  L+L+HN+LS      F  L+ L  L+L +N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 20/246 (8%)

Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLAN 256
           ++P  I   +N   L+L +N        +   L  LE L L RNS+  +I       LA+
Sbjct: 68  EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLYLGGNKL 315
           +  L L +N LT     +   ++KL  L L +N +   I ++ F  +  +  L LG    
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL-- 181

Query: 316 KWNDNVSIVPKCM-----LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQW 370
                  I          L  L+L  C+++  +P  L+    L  L++S N      P  
Sbjct: 182 --KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGS 237

Query: 371 LSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLM 428
              L +L  + + ++ ++  +    F+   +L  L L+ NN S    +       ++ L 
Sbjct: 238 FHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296

Query: 429 LSSNNF 434
           L  N +
Sbjct: 297 LHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.4 bits (196), Expect = 1e-15
 Identities = 61/348 (17%), Positives = 102/348 (29%), Gaps = 102/348 (29%)

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290
            +   +   R  LS E+P+ I   +N   L L  N +      + R++  L  L      
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVL------ 104

Query: 291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350
                              LG N ++      I                        +  
Sbjct: 105 ------------------QLGRNSIR-----QIEVGA-------------------FNGL 122

Query: 351 TELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRN 408
             L  L+L +N L          L  L  + L +N +  S+P   F    +L  L L   
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL 181

Query: 409 NFSGELPETIGQS-TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGS 467
                + E   +   ++  L L   N    +P +++ +  L  L++S N F         
Sbjct: 182 KKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFP-------- 231

Query: 468 DSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNL 527
                                         +    F G        LS L+ L + ++ +
Sbjct: 232 -----------------------------EIRPGSFHG--------LSSLKKLWVMNSQV 254

Query: 528 TGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575
           +         L+SL  LNL +  L     D  + L  L  L L +N  
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  109 bits (275), Expect = 3e-26
 Identities = 64/311 (20%), Positives = 122/311 (39%), Gaps = 26/311 (8%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
            L  +  S   ++ +VP     +      LDL++N +         NL+ L  L L  N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPPDTA---LLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 171 IEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ 229
           I  K+S    A L  L++L L  N ++ ++P ++     L +L + +N+ +         
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNG 143

Query: 230 LRKLETLDLQRNSL-SGEIPEDI-GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
           L ++  ++L  N L S  I       +  ++ + +++  +T  IPQ +     L  L LD
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLD 200

Query: 288 SNVLSGEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346
            N ++ ++       L  +  L L  N +   DN S+     L EL L +  +   +P  
Sbjct: 201 GNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258

Query: 347 LSTQTELTFLDLSENELEG------TYPQWLSEL-NLGTVILSDNMLT-GSLPPPLFES- 397
           L+    +  + L  N +          P + ++  +   V L  N +    + P  F   
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 398 RNLSVLVLSRN 408
              + + L   
Sbjct: 319 YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  109 bits (274), Expect = 3e-26
 Identities = 67/351 (19%), Positives = 117/351 (33%), Gaps = 65/351 (18%)

Query: 375 NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
           +L  V  SD  L   +P  L    + ++L L  N  +           ++  L+L +N  
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFG--VT 492
           S   P + + + +L  L LS N    E P     +L   + +  N  +    S F     
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQ-ELRVHENEITKVRKSVFNGLNQ 146

Query: 493 ILMLSLSENKF-SGQLPQN-LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA 550
           ++++ L  N   S  +       +  L ++ + D N+T   P  L    SL  L+L    
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNK 203

Query: 551 LEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEI 609
           +   +    L  L +L  L LS N++      S  N   +                    
Sbjct: 204 IT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-------------------- 242

Query: 610 QDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQG-- 667
           ++L                       L+NN+L  ++P  L   K ++ + L  N +    
Sbjct: 243 REL----------------------HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 668 ----NIPSTFGNLEILETLDLSHNSLSGKI--PQTFAKLQQLTSLYLSNNK 712
                 P           + L  N +      P TF  +    ++ L N K
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (254), Expect = 2e-23
 Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 20/217 (9%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
             L  L LS N ++ E+P      L     L + +N +   +   +F  L  +  ++L  
Sbjct: 100 VKLERLYLSKNQLK-ELPEKMPKTLQE---LRVHENEIT-KVRKSVFNGLNQMIVVELGT 154

Query: 169 NAI-EGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLS 226
           N +    + +    G+K L  + + D  I   IP   G   +L +L L  NK +     S
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAAS 211

Query: 227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRL 286
           L  L  L  L L  NS+S      +    ++  L L+NN L   +P  + +   +  + L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 287 DSNVLSGEISTWLF-------DLQGMKSLYLGGNKLK 316
            +N +S  I +  F              + L  N ++
Sbjct: 271 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.0 bits (242), Expect = 5e-22
 Identities = 58/255 (22%), Positives = 92/255 (36%), Gaps = 40/255 (15%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
            V  S      +VP        +L L  NK +     +  NL  L  L L +N ++   P
Sbjct: 35  VVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID- 591
              + L  L+ L L    L+  + + +    +LQ L +  N +     S F  L  MI  
Sbjct: 94  GAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVV 150

Query: 592 -------TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE 644
                    S +      F                      K L   S + +++  ++  
Sbjct: 151 ELGTNPLKSSGIE--NGAFQ-------------------GMKKL---SYIRIADTNIT-T 185

Query: 645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT 704
           IP   G    L  L+L  N++     ++   L  L  L LS NS+S     + A    L 
Sbjct: 186 IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 705 SLYLSNNKLSGRIPE 719
            L+L+NNKL  ++P 
Sbjct: 244 ELHLNNNKLV-KVPG 257

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 2e-21
 Identities = 68/288 (23%), Positives = 110/288 (38%), Gaps = 24/288 (8%)

Query: 183 KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS 242
            +   L L +N I      +  NL NLH L L  NK S   P +   L KLE L L +N 
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 243 LSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL-SGEISTWLF- 300
           L  E+PE       +  L +  N +T         + +++ + L +N L S  I    F 
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 301 DLQGMKSLYLGGNKLKWNDNVSIVPKCM---LTELSLRSCSVRGSIPLWLSTQTELTFLD 357
            ++ +  + +    +      + +P+ +   LTEL L    +       L     L  L 
Sbjct: 169 GMKKLSYIRIADTNI------TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 358 LSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG---- 412
           LS N +       L+   +L  + L++N L   +P  L + + + V+ L  NN S     
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281

Query: 413 --ELPETIGQSTSVMVLMLSSNNFSGHV--PKSISNIYRLLVLDLSNN 456
               P    +  S   + L SN        P +   +Y    + L N 
Sbjct: 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.0 bits (185), Expect = 1e-14
 Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 51/206 (24%)

Query: 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL 576
           L+ +   D  L  + P  L       +L+L+N  +         NL +L  L L NN + 
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 577 GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDL 636
              P +F  L         L  L                                    L
Sbjct: 90  KISPGAFAPLVK-------LERL-----------------------------------YL 107

Query: 637 SNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI--P 694
           S NQL  E+P  +   K L+ L +  N++     S F  L  +  ++L  N L       
Sbjct: 108 SKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 695 QTFAKLQQLTSLYLSNNKLSGRIPES 720
             F  +++L+ + +++  ++  IP+ 
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQG 189

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 15/165 (9%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
           + L  + ++  ++   +P     +   LT L L  N +   + +     L  L  L LS 
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLPPS---LTELHLDGNKIT-KVDAASLKGLNNLAKLGLSF 225

Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG------G 222
           N+I    +  +A   +L++L L++N +  ++P  + +   +  + L  N  S        
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 223 IPLSLLQLRKLETLDLQRNSLS-GEIPEDI-GTLANITILALSNN 265
            P    +      + L  N +   EI       +     + L N 
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
            +L  L LS+NS+   V     AN   L  L L +N L   +P  L + +Y++ + L  N
Sbjct: 216 NNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 170 AIEG------KLSSRVAGLKNLKQLILDDNLIQ-GQIPAEI-GNLTNLHKLSLRQNK 218
            I                  +   + L  N +Q  +I       +     + L   K
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  108 bits (272), Expect = 4e-26
 Identities = 67/319 (21%), Positives = 107/319 (33%), Gaps = 68/319 (21%)

Query: 399 NLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSF 458
           + + +  +    +  +P  I   +S   L L SN            + +L  L LS+N  
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 459 SGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQ 518
           S                  S    G        ++  L LS N     +  N   L  L+
Sbjct: 65  S-------------FKGCCSQSDFG------TTSLKYLDLSFNGVI-TMSSNFLGLEQLE 104

Query: 519 HLDLHDNNLT--GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL 576
           HLD   +NL    EF  F   L +L  L++ +T    +     + L+SL++L ++ N+  
Sbjct: 105 HLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 577 GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDL 636
                                  P+IF+    +  L                      DL
Sbjct: 164 ENFL-------------------PDIFTELRNLTFL----------------------DL 182

Query: 637 SNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQT 696
           S  QL    P++  SL  L+ LN+S+N         +  L  L+ LD S N +     Q 
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242

Query: 697 FAKLQ-QLTSLYLSNNKLS 714
                  L  L L+ N  +
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  106 bits (267), Expect = 2e-25
 Identities = 47/212 (22%), Positives = 75/212 (35%), Gaps = 9/212 (4%)

Query: 110 RSLMTLDLSYNSMQ-GEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA 168
             L  L LS N +             T L YLDL  N +  ++ S    L  LE LD   
Sbjct: 52  TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110

Query: 169 NAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLS 226
           + ++      V   L+NL  L +     +      I   L++L  L +  N F       
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 227 LLQ-LRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSIRNMTKLVTL 284
           +   LR L  LDL +  L  ++      +L+++ +L +S+N          + +  L  L
Sbjct: 170 IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 285 RLDSNVLSGEISTWLFDLQG-MKSLYLGGNKL 315
               N +       L      +  L L  N  
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 98.9 bits (247), Expect = 8e-23
 Identities = 52/259 (20%), Positives = 91/259 (35%), Gaps = 16/259 (6%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
           S   +  +   +   VP    ++ T    L+L+ N L          L  L  L LS+N 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGIPSSAT---RLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 171 IEGKLSSRVA--GLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL 228
           +  K     +  G  +LK L L  N +   + +    L  L  L  + +        S+ 
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 229 Q-LRKLETLDLQRNSLSGEIPEDI-GTLANITILALS-NNALTGAIPQSIRNMTKLVTLR 285
             LR L  LD+            I   L+++ +L ++ N+     +P     +  L  L 
Sbjct: 123 LSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 286 LDSNVLSGEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP 344
           L    L  ++S   F+ L  ++ L +  N     D         L  L      +  +  
Sbjct: 182 LSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSK 239

Query: 345 --LWLSTQTELTFLDLSEN 361
                   + L FL+L++N
Sbjct: 240 KQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 16/252 (6%)

Query: 336 SCSVRG--SIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLT-GSLP 391
            C+ +G  S+P  + +    T L+L  N+L+        +L  L  + LS N L+     
Sbjct: 13  RCNSKGLTSVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 392 PPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSI-SNIYRLL 449
                   +L  L LS N     +         +  L    +N       S+  ++  L+
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 450 VLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSF--GVTIL-MLSLSENKFSG 505
            LD+S+      F   F   S +  + ++ N F           +  L  L LS+ +   
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 188

Query: 506 QLPQN-LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNL-T 563
           QL     ++LS LQ L++  NN           L+SLQVL+     +  S    L +  +
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248

Query: 564 SLQILDLSNNNL 575
           SL  L+L+ N+ 
Sbjct: 249 SLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 7/139 (5%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
           R+L+ LD+S+   +       F  L+ L  L +  N+   +    +F  LR L FLDLS 
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 169 NAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSL 227
             +E +LS      L +L+ L +  N            L +L  L    N          
Sbjct: 185 CQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQE 242

Query: 228 LQ--LRKLETLDLQRNSLS 244
           LQ     L  L+L +N  +
Sbjct: 243 LQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 40/203 (19%), Positives = 62/203 (30%), Gaps = 45/203 (22%)

Query: 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG 577
             +  +   LT   P  +   SS   L L +  L+         LT L  L LS+N L  
Sbjct: 10  TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-- 64

Query: 578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLS 637
                           S      +       ++ L                      DLS
Sbjct: 65  ----------------SFKGCCSQSDFGTTSLKYL----------------------DLS 86

Query: 638 NNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP-STFGNLEILETLDLSHNSLSGKIPQT 696
            N +   + S+   L+ L+ L+  ++ L+     S F +L  L  LD+SH          
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 697 FAKLQQLTSLYLSNNKLSGRIPE 719
           F  L  L  L ++ N        
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLP 168

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.2 bits (162), Expect = 7e-12
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQL--QGNIPSTFGNLEILETLDLSHNSLSGK 692
           +L +N+L          L  L  L+LS N L  +G    +      L+ LDLS N +   
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 92

Query: 693 IPQTFAKLQQLTSLYLSNNKLSGRIPESP 721
           +   F  L+QL  L   ++ L      S 
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (277), Expect = 7e-26
 Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 28/251 (11%)

Query: 468 DSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNL 527
            +    V         EVP        +L+L EN+       +  +L  L+ L L  N++
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 528 TGEFPAFLSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNL 586
                   + L++L  L L +  L  +I +G    L+ L+ L L NN +           
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI----------- 148

Query: 587 QGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA-IYSL--MDLSNNQLSG 643
                    +P     F+    ++ L +        +S  +   + +L  ++L+   L  
Sbjct: 149 -------ESIP--SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198

Query: 644 EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQL 703
           EIP+ L  L  L  L+LS N L    P +F  L  L+ L +  + +       F  LQ L
Sbjct: 199 EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 704 TSLYLSNNKLS 714
             + L++N L+
Sbjct: 258 VEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  105 bits (265), Expect = 2e-24
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 12/209 (5%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
           R L  L LS N ++  +    F  L  L  L+L DN L  +IP+  F  L  L+ L L  
Sbjct: 88  RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145

Query: 169 NAIEGKLSSRV-AGLKNLKQLILDD-NLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPL 225
           N IE  + S     + +L++L L +   +   I       L+NL  L+L        IP 
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLRE-IP- 201

Query: 226 SLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLR 285
           +L  L KL+ LDL  N LS   P     L ++  L +  + +      +  N+  LV + 
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 286 LDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
           L  N L+  +   LF  L  ++ ++L  N
Sbjct: 262 LAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 6e-23
 Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 31/244 (12%)

Query: 475 DISSNRFSGEVPSSF-GVTIL-MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
           ++  N+      +SF  +  L +L LS N          + L+ L  L+L DN LT    
Sbjct: 70  NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN 129

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNLLGKIPS-SF---GNLQ 587
                LS L+ L LRN  +E SI     + + SL+ LDL     L  I   +F    NL+
Sbjct: 130 GAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 588 GMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPS 647
            +      L  +P   +  +++ +L                      DLS N LS   P 
Sbjct: 189 YLNLAMCNLREIPN-LTPLIKLDEL----------------------DLSGNHLSAIRPG 225

Query: 648 SLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLY 707
           S   L  L+ L +  +Q+Q    + F NL+ L  ++L+HN+L+      F  L  L  ++
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285

Query: 708 LSNN 711
           L +N
Sbjct: 286 LHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 61/316 (19%), Positives = 96/316 (30%), Gaps = 69/316 (21%)

Query: 375 NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
               VI     L   +P  +    N  +L L  N        +      + +L LS N+ 
Sbjct: 44  QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL 494
                 + + +  L  L+L +N  +                I +  F   +       + 
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLT---------------TIPNGAFVY-LSK-----LK 139

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA-FLSQLSSLQVLNLRNTALEG 553
            L L  N          + +  L+ LDL +              LS+L+ LNL    L  
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-- 197

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI 613
                L+ L  L  LDLS N+L    P SF  L         L  L              
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH-------LQKL-------------- 236

Query: 614 VNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTF 673
                                 +  +Q+     ++  +L+ L  +NL++N L       F
Sbjct: 237 ---------------------WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 674 GNLEILETLDLSHNSL 689
             L  LE + L HN  
Sbjct: 276 TPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 59/264 (22%), Positives = 105/264 (39%), Gaps = 32/264 (12%)

Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLAN 256
           ++P  I   TN   L+L +N+       S   LR LE L L RN +   I       LAN
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113

Query: 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLYLGGNKL 315
           +  L L +N LT     +   ++KL  L L +N +   I ++ F  +  ++ L LG  K 
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK- 171

Query: 316 KWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN 375
                        L+ +S  +              + L +L+L+   L    P     + 
Sbjct: 172 ------------RLSYISEGA----------FEGLSNLRYLNLAMCNLR-EIPNLTPLIK 208

Query: 376 LGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
           L  + LS N L+ ++ P  F+   +L  L + ++              S++ + L+ NN 
Sbjct: 209 LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 435 SGHVPKSISNIYRLLVLDLSNNSF 458
           +       + ++ L  + L +N +
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHNPW 291

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  105 bits (265), Expect = 2e-25
 Identities = 53/250 (21%), Positives = 75/250 (30%), Gaps = 46/250 (18%)

Query: 467 SDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN 526
            +                VP         + L  N+ S     +      L  L LH N 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 527 LTGEFPAFLSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGN 585
           L     A  + L+ L+ L+L + A   S+       L  L  L L    L          
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL---------- 117

Query: 586 LQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEI 645
                     L   P +F     +Q L                       L +N L   +
Sbjct: 118 --------QELG--PGLFRGLAALQYL----------------------YLQDNALQ-AL 144

Query: 646 PS-SLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT 704
           P  +   L  L  L L  N++       F  L  L+ L L  N ++   P  F  L +L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 705 SLYLSNNKLS 714
           +LYL  N LS
Sbjct: 205 TLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 11/188 (5%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDD 192
                + L  N ++  +P+  F   R L  L L +N +  ++ +    GL  L+QL L D
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 193 NLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSLSGEIPED 250
           N     +       L  LH L L +      +   L + L  L+ L LQ N+L   +P+D
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 251 I-GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSL 308
               L N+T L L  N ++    ++ R +  L  L L  N ++  +    F  L  + +L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTL 206

Query: 309 YLGGNKLK 316
           YL  N L 
Sbjct: 207 YLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 51/162 (31%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
             L  LDLS N+    V    F  L RL  L L    L   +   LF  L  L++L L  
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQD 138

Query: 169 NAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLS 226
           NA++  L       L NL  L L  N I   +P      L +L +L L QN+ +   P +
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 227 LLQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNAL 267
              L +L TL L  N+LS  +P +    L  +  L L++N  
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 54/232 (23%), Positives = 80/232 (34%), Gaps = 32/232 (13%)

Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL 243
             +++ L  N I     A      NL  L L  N  +     +   L  LE LDL  N+ 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 244 SGEIPEDI-GTLANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLFD 301
              +       L  +  L L    L   +   + R +  L  L L  N L   +    F 
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFR 150

Query: 302 -LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSE 360
            L  +  L+L GN++      S VP+     L                    L  L L +
Sbjct: 151 DLGNLTHLFLHGNRI------SSVPERAFRGL------------------HSLDRLLLHQ 186

Query: 361 NELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNF 410
           N +   +P    +L  L T+ L  N L+ +LP       R L  L L+ N +
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 7e-16
 Identities = 53/286 (18%), Positives = 85/286 (29%), Gaps = 69/286 (24%)

Query: 406 SRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAF 465
            +      +P  I    +   + L  N  S     S      L +L L +N  +      
Sbjct: 19  PQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA------ 69

Query: 466 GSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQN-LSNLSLLQHLDLHD 524
                     I +  F+G +       +  L LS+N     +       L  L  L L  
Sbjct: 70  ---------RIDAAAFTG-LAL-----LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 525 NNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSF 583
             L    P     L++LQ L L++ AL+ ++ D    +L +L  L L  N +      +F
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 584 GNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSG 643
             L                      +  L                       L  N+++ 
Sbjct: 174 RGL--------------------HSLDRL----------------------LLHQNRVAH 191

Query: 644 EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL 689
             P +   L  L +L L  N L          L  L+ L L+ N  
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 50/247 (20%), Positives = 79/247 (31%), Gaps = 33/247 (13%)

Query: 336 SCSVRG--SIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPP 392
           SC  +G  ++P+ +   +    + L  N +            NL  + L  N+L   +  
Sbjct: 17  SCPQQGLQAVPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDA 73

Query: 393 PLFES-RNLSVLVLSRNNFSGELP-ETIGQSTSVMVLMLSSNNFSGHVPKSI-SNIYRLL 449
             F     L  L LS N     +   T      +  L L        +   +   +  L 
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132

Query: 450 VLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL-MLSLSENKFSGQLP 508
            L L +N+                  +  + F         +  L  L L  N+ S    
Sbjct: 133 YLYLQDNALQ---------------ALPDDTFRD-------LGNLTHLFLHGNRISSVPE 170

Query: 509 QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQIL 568
           +    L  L  L LH N +    P     L  L  L L    L    T+ L+ L +LQ L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 569 DLSNNNL 575
            L++N  
Sbjct: 231 RLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 54/232 (23%), Positives = 89/232 (38%), Gaps = 17/232 (7%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
           T    +  L   +P  I   A    + L  N ++     S R    L  L L SNVL+  
Sbjct: 15  TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 295 ISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC-----MLTELSLRSCSVRGSIPL-WLS 348
            +     L  ++ L L  N        S+ P        L  L L  C ++  +      
Sbjct: 72  DAAAFTGLALLEQLDLSDN----AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFR 126

Query: 349 TQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLS 406
               L +L L +N L+        +L NL  + L  N ++ S+P   F    +L  L+L 
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLH 185

Query: 407 RNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSF 458
           +N  +   P        +M L L +NN S    ++++ +  L  L L++N +
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
            L  N++S    +S  + + L  L L  N L     + F  L +LE LDLS N+    + 
Sbjct: 38  FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD 97

Query: 695 -QTFAKLQQLTSLYLSNNKLSGRIPE 719
             TF  L +L +L+L    L   +  
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQ-ELGP 122

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLSGKI 693
            L +N L+    ++   L  L+ L+LS N    ++   TF  L  L TL L    L    
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 694 PQTFAKLQQLTSLYLSNNKLSGRIPE 719
           P  F  L  L  LYL +N L   +P+
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPD 146

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
                 L   +P  +      + + L  N++     ++F     L  L L  N L+    
Sbjct: 17  SCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 695 QTFAKLQQLTSLYLSNNKLSGRIPES 720
             F  L  L  L LS+N     +  +
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPA 99

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  105 bits (265), Expect = 5e-25
 Identities = 61/311 (19%), Positives = 116/311 (37%), Gaps = 27/311 (8%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSAN 169
            L  +  S   ++  VP     + T    LDL++N+++  +    F  L++L  L L  N
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTT---LLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 170 AIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL 228
            I  K+  +  + L+ L++L +  N +  +IP  +   ++L +L +  N+          
Sbjct: 89  KIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFS 144

Query: 229 QLRKLETLDLQRNSL-SGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
            LR +  +++  N L +            +  L +S   LT  IP+ +     L  L LD
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLD 201

Query: 288 SNVLSGEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW 346
            N +   I          +  L LG N+++  +N S+     L EL L +  +   +P  
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259

Query: 347 LSTQTELTFLDLSENELE-------GTYPQWLSELNLGTVILSDNMLT-GSLPPPLFES- 397
           L     L  + L  N +              +       + L +N +    + P  F   
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 398 RNLSVLVLSRN 408
            +   +     
Sbjct: 320 TDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (255), Expect = 9e-24
 Identities = 71/351 (20%), Positives = 120/351 (34%), Gaps = 66/351 (18%)

Query: 375 NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
           +L  V  SD  L  ++P  +  S + ++L L  N+ S    +       +  L+L +N  
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFG--VT 492
           S    K+ S + +L  L +S N    E P     SLV  + I  NR        F     
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLV-ELRIHDNRIRKVPKGVFSGLRN 148

Query: 493 ILMLSLSENKFSGQL--PQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA 550
           +  + +  N        P     L L  +L + +  LT   P  L    +L  L+L +  
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKL-NYLRISEAKLT-GIPKDL--PETLNELHLDHNK 204

Query: 551 LEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEI 609
           ++ +I    L   + L  L L +N +      S   L  +                    
Sbjct: 205 IQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL-------------------- 243

Query: 610 QDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNI 669
           ++L                       L NN+LS  +P+ L  LK L+ + L  N +    
Sbjct: 244 REL----------------------HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280

Query: 670 PSTFGNLEI------LETLDLSHNSLSGKI--PQTFAKLQQLTSLYLSNNK 712
            + F  +           + L +N +      P TF  +    ++   N K
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (252), Expect = 2e-23
 Identities = 71/355 (20%), Positives = 124/355 (34%), Gaps = 73/355 (20%)

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
           L  +      L   +P++I    + T+L L NN ++       + +  L  L L +N +S
Sbjct: 35  LRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 293 GEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCM---LTELSLRSCSVRGSIPLWLS 348
            +I    F  L+ ++ LY+  N L        +P  +   L EL +    +R       S
Sbjct: 92  -KIHEKAFSPLRKLQKLYISKNHL------VEIPPNLPSSLVELRIHDNRIRKVPKGVFS 144

Query: 349 TQTELTFLDLSENELEGTY--PQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLS 406
               +  +++  N LE +   P     L L  + +S+  LT  +P  L     L+ L L 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLD 201

Query: 407 RNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFG 466
            N                    +   +             +L  L L +N          
Sbjct: 202 HNKIQ----------------AIELEDLLR--------YSKLYRLGLGHNQIR------- 230

Query: 467 SDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN 526
                    I +   S  +P+     +  L L  NK S ++P  L +L LLQ + LH NN
Sbjct: 231 --------MIENGSLSF-LPT-----LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275

Query: 527 LT----GEFP--AFLSQLSSLQVLNLRNTALE-GSITDGL-SNLTSLQILDLSNN 573
           +T     +F    F  + +    ++L N  +    +       +T    +   N 
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 96.2 bits (240), Expect = 9e-22
 Identities = 61/256 (23%), Positives = 85/256 (33%), Gaps = 43/256 (16%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
            V  S       VP        +L L  N  S     +   L  L  L L +N ++    
Sbjct: 37  VVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID- 591
              S L  LQ L +    L   I   L   +SL  L + +N +       F  L+ M   
Sbjct: 96  KAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 592 -------TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE 644
                    S     P  F                  GL    L       +S  +L+  
Sbjct: 153 EMGGNPLENSGFE--PGAFD-----------------GLKLNYL------RISEAKLT-G 186

Query: 645 IPSSLGSLKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLSGKIPQTFAKLQQL 703
           IP  L   + L  L+L +N++Q  I          L  L L HN +      + + L  L
Sbjct: 187 IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243

Query: 704 TSLYLSNNKLSGRIPE 719
             L+L NNKLS R+P 
Sbjct: 244 RELHLDNNKLS-RVPA 258

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 63/325 (19%), Positives = 106/325 (32%), Gaps = 60/325 (18%)

Query: 399 NLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSF 458
           +L V+  S       +P+ I  S    +L L +N+ S         +  L  L L NN  
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 459 SG-EFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLL 517
           S     AF     +  + IS N    E+P +   +++ L + +N+         S L  +
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 518 QHLDLHDNNLT-GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL 576
             +++  N L    F         L  L +    L   I   L    +L  L L +N + 
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKI- 205

Query: 577 GKIPS-SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMD 635
             I                 L  L                                    
Sbjct: 206 QAIELEDLLRYSK-------LYRL-----------------------------------G 223

Query: 636 LSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQ 695
           L +NQ+      SL  L  L+ L+L  N+L   +P+   +L++L+ + L  N+++     
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282

Query: 696 TFA------KLQQLTSLYLSNNKLS 714
            F       K      + L NN + 
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 3e-21
 Identities = 62/289 (21%), Positives = 110/289 (38%), Gaps = 27/289 (9%)

Query: 183 KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS 242
            +   L L +N I      +   L +L+ L L  NK S     +   LRKL+ L + +N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 243 LSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL-SGEISTWLFD 301
           L  EIP      +++  L + +N +          +  +  + +  N L +       FD
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 302 LQGMKSLYLGGNKLKWNDNVSIVPKCM---LTELSLRSCSVRGSIPLW-LSTQTELTFLD 357
              +  L +   KL      + +PK +   L EL L    ++ +I L  L   ++L  L 
Sbjct: 171 GLKLNYLRISEAKL------TGIPKDLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLG 223

Query: 358 LSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPE 416
           L  N++       LS L  L  + L +N L+  +P  L + + L V+ L  NN + ++  
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

Query: 417 TI-------GQSTSVMVLMLSSNNFSGHV--PKSISNIYRLLVLDLSNN 456
                     +      + L +N        P +   +   L +   N 
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 46/220 (20%), Positives = 83/220 (37%), Gaps = 21/220 (9%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
           R L  L +S N +  E+P    ++L     L + DN +   +P  +F  LR +  +++  
Sbjct: 102 RKLQKLYISKNHLV-EIPPNLPSSLVE---LRIHDNRIR-KVPKGVFSGLRNMNCIEMGG 156

Query: 169 NAI-EGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSL 227
           N +              L  L + +  +   IP        L++L L  NK        L
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDL 213

Query: 228 LQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSIRNMTKLVTLRL 286
           L+  KL  L L  N +   I       L  +  L L NN L+  +P  + ++  L  + L
Sbjct: 214 LRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271

Query: 287 DSNVLSGEISTWLFD-------LQGMKSLYLGGNKLKWND 319
            +N ++ ++    F              + L  N + + +
Sbjct: 272 HTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 16/267 (5%)

Query: 336 SCSVRG--SIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPP 392
            CS  G  ++P  +S  T  T LDL  N++          L +L  ++L +N ++  +  
Sbjct: 39  QCSDLGLKAVPKEISPDT--TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHE 95

Query: 393 PLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVL 451
             F   R L  L +S+N+   E+P      +S++ L +  N          S +  +  +
Sbjct: 96  KAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152

Query: 452 DLSNNSFSG---EFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLP 508
           ++  N       E  AF    L  ++ IS  + +  +P     T+  L L  NK      
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLN-YLRISEAKLT-GIPKDLPETLNELHLDHNKIQAIEL 210

Query: 509 QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQIL 568
           ++L   S L  L L  N +       LS L +L+ L+L N  L   +  GL +L  LQ++
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 569 DLSNNNLLGKIPSSFGNLQGMIDTPSI 595
            L  NN+     + F  +   +     
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYY 296

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 34/194 (17%), Positives = 66/194 (34%), Gaps = 23/194 (11%)

Query: 87  DLNNLFPLD----SIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDL 142
            L N+  ++     +  S      F    L  L +S   +   +P         L  L L
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPET---LNELHL 200

Query: 143 KDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIP 200
             N +  +I  +       L  L L  N I   + +   + L  L++L LD+N +  ++P
Sbjct: 201 DHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 201 AEIGNLTNLHKLSLRQNKFSGGIP-------LSLLQLRKLETLDLQRNSLS-GEIPEDI- 251
           A + +L  L  + L  N  +  +           ++      + L  N +   E+     
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316

Query: 252 GTLANITILALSNN 265
             + +   +   N 
Sbjct: 317 RCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 10/119 (8%)

Query: 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLS 167
           R   L  L L +N ++  +     + L  L  L L +N L+  +P+ L +L+ L+ + L 
Sbjct: 215 RYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272

Query: 168 ANAIEG------KLSSRVAGLKNLKQLILDDNLIQ-GQIPAEI-GNLTNLHKLSLRQNK 218
            N I                      + L +N +   ++       +T+   +     K
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.0 bits (247), Expect = 1e-22
 Identities = 51/267 (19%), Positives = 96/267 (35%), Gaps = 18/267 (6%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDDN 193
             +  LDL +N +     S L     L+ L L++N I   +     + L +L+ L L  N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 194 LIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSLSGEIPEDI 251
            +   + +     L++L  L+L  N +      SL   L KL+ L +       +I    
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 252 -GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLY 309
              L  +  L +  + L    P+S++++  +  L L        +     D    ++ L 
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228

Query: 310 LGGNKLKWNDNVSI--------VPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSEN 361
           L    L       +        + K     + +   S+   +   L+  + L  L+ S N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRN 287

Query: 362 ELEGTYPQWLSEL-NLGTVILSDNMLT 387
           +L+         L +L  + L  N   
Sbjct: 288 QLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.9 bits (226), Expect = 8e-20
 Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 16/221 (7%)

Query: 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDL 166
           R  +L  L L+ N +   +    F++L  L +LDL  N L  ++ S  F  L  L FL+L
Sbjct: 74  RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNL 131

Query: 167 SANAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIP 224
             N  +    + + + L  L+ L + +     +I  +    LT L +L +  +      P
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191

Query: 225 LSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSI-------- 275
            SL  ++ +  L L        + E      +++  L L +  L       +        
Sbjct: 192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 276 RNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
                   +++    L  ++   L  + G+  L    N+LK
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.6 bits (220), Expect = 4e-19
 Identities = 46/218 (21%), Positives = 90/218 (41%), Gaps = 16/218 (7%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
            SL  LDLSYN +   +  + F  L+ LT+L+L  N       + LF +L  L+ L +  
Sbjct: 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 169 NAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNK-------- 218
                K+  +  AGL  L++L +D + +Q     +   ++ N+  L L   +        
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIF 217

Query: 219 FSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNM 278
                 +  L+LR  +      + LS      +        + +++ +L   + + +  +
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQI 276

Query: 279 TKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNKL 315
           + L+ L    N L   +   +FD L  ++ ++L  N  
Sbjct: 277 SGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 46/258 (17%), Positives = 84/258 (32%), Gaps = 39/258 (15%)

Query: 472 GHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEF 531
           G    SS   +  +PS     +  L LS N+ +     +L     LQ L L  N +    
Sbjct: 34  GICKGSSGSLN-SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92

Query: 532 PAFLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNLLGKIPSSFGNLQGMI 590
               S L SL+ L+L    L  +++      L+SL  L+L  N       +S  +    +
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 591 DTPSILPTL------PEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE 644
               +           + F+    +++L                      ++  + L   
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEEL----------------------EIDASDLQSY 189

Query: 645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHN--------SLSGKIPQT 696
            P SL S++ +  L L   Q    +         +E L+L            LS     +
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249

Query: 697 FAKLQQLTSLYLSNNKLS 714
             K     ++ +++  L 
Sbjct: 250 LIKKFTFRNVKITDESLF 267

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 9e-18
 Identities = 60/290 (20%), Positives = 103/290 (35%), Gaps = 19/290 (6%)

Query: 429 LSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPS 487
            SS + +  +P  ++    +  LDLSNN  +            +  + ++SN  +     
Sbjct: 38  GSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 488 SF-GVTIL-MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA-FLSQLSSLQVL 544
           SF  +  L  L LS N  S         LS L  L+L  N           S L+ LQ+L
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 545 NLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIF 603
            + N      I     + LT L+ L++  ++L    P S  ++Q +     IL       
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL--ILHMKQ-HI 211

Query: 604 SFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYN 663
                  D+  +       +    L    L     ++LS    +SL      +++ ++  
Sbjct: 212 LLLEIFVDVTSS-------VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264

Query: 664 QLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
            L   +      +  L  L+ S N L       F +L  L  ++L  N  
Sbjct: 265 SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 53/305 (17%), Positives = 101/305 (33%), Gaps = 53/305 (17%)

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
           +++LDL  N ++     D+    N+  L L++N +      S  ++  L  L L  N LS
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 293 GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM------LTELSLRSCSVRGSIPL- 345
              S+W   L  +  L L GN  K     ++    +      L  L + +      I   
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYK-----TLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 346 WLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVL 403
             +  T L  L++  ++L+   P+ L  + N+  +IL        L     +   ++  L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 404 VLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP 463
            L   +                      +  S     S+   +    + +++ S      
Sbjct: 228 ELRDTDLDT----------------FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

Query: 464 AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLH 523
                S +  ++ S N+                S+ +  F          L+ LQ + LH
Sbjct: 272 LLNQISGLLELEFSRNQLK--------------SVPDGIF--------DRLTSLQKIWLH 309

Query: 524 DNNLT 528
            N   
Sbjct: 310 TNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 54/299 (18%), Positives = 104/299 (34%), Gaps = 23/299 (7%)

Query: 375 NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
             G    S   L  S+P  L E   +  L LS N  +      + +  ++  L+L+SN  
Sbjct: 32  RNGICKGSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGEFP--AFGSDSLVGHVDISSNRFSGEVPSSFGVT 492
           +     S S++  L  LDLS N  S       F   S +  +++  N +     +S    
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 493 ILMLSLSENKFSGQL----PQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRN 548
           +  L +              ++ + L+ L+ L++  ++L    P  L  + ++  L L  
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 549 TALEGSITDGL-SNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPV 607
                 + +      +S++ L+L + +L     S      G  ++     T   +     
Sbjct: 208 KQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST--GETNSLIKKFTFRNV----- 259

Query: 608 EIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQ 666
               +          L ++   +  L + S NQL          L  L+ + L  N   
Sbjct: 260 ---KITDESLFQVMKLLNQISGLLEL-EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 81/475 (17%), Positives = 157/475 (33%), Gaps = 40/475 (8%)

Query: 137 LTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQ 196
                     +  +       L  L  LD   ++I     + +  L  L +LI   N I 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNIT 77

Query: 197 GQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN 256
                ++   TNL  L+   NK +    L +  L KL  L+   N L+     D+     
Sbjct: 78  TL---DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPL 128

Query: 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           +T L  + N LT      + + T+L  L    N    ++   +     + +L    NK+ 
Sbjct: 129 LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNL 376
               + +    +L  L+  + ++   +   L+   +LTFLD S N+L  T         L
Sbjct: 184 ---ELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL--TEIDVTPLTQL 235

Query: 377 GTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG 436
                S N LT  L         L+ L   + +   E+   +  +T ++           
Sbjct: 236 TYFDCSVNPLT-ELDVSTLS--KLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIK 289

Query: 437 HVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILML 496
            +   +++  +L +LD      + E     +  LV ++ +++   + E+  S    +  L
Sbjct: 290 ELD--VTHNTQLYLLDCQAAGIT-ELDLSQNPKLV-YLYLNNTELT-ELDVSHNTKLKSL 344

Query: 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG--- 553
           S            ++  +  L +    +          L+  S    ++       G   
Sbjct: 345 SCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVE 608
           +I  G   +       ++  NL    P+                T P     P++
Sbjct: 403 NIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPIK 457

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 95.9 bits (239), Expect = 4e-21
 Identities = 77/417 (18%), Positives = 139/417 (33%), Gaps = 37/417 (8%)

Query: 183 KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS 242
            N    +     +Q         L  L  L    +  +    +   +L  L  L    N+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSNN 75

Query: 243 LSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDL 302
           ++     D+    N+T LA  +N LT      +  +TKL  L  D+N L+    +    L
Sbjct: 76  ITT---LDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 303 QGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENE 362
                L    N L     + +     LTEL          +   ++ QT+LT LD S N+
Sbjct: 130 T---YLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 363 LEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQST 422
           +            L  +    N +T      L ++  L+ L  S N  + E+   +   T
Sbjct: 182 ITELDVSQNK--LLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EID--VTPLT 233

Query: 423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFS 482
            +     S N  +      +S + +L  L         E     +  L+ +      R  
Sbjct: 234 QLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLL-EIDLTHNTQLI-YFQAEGCRKI 288

Query: 483 GEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQ 542
            E+  +    + +L       + +L   LS    L +L L++  LT E    +S  + L+
Sbjct: 289 KELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLK 342

Query: 543 VLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTL 599
            L+  N  ++      +  + +L     +    +     +  N    I     L   
Sbjct: 343 SLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 6e-20
 Identities = 63/390 (16%), Positives = 128/390 (32%), Gaps = 61/390 (15%)

Query: 329 LTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL----NLGTVILSDN 384
                  +  ++ +  +       LT LD   + +       ++ +     L  +I + N
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD-----MTGIEKLTGLTKLICTSN 74

Query: 385 MLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISN 444
            +T      L ++ NL+ L    N  +  L   +   T +  L   +N  +      +S 
Sbjct: 75  NITT---LDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDVSQ 125

Query: 445 IYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFS 504
              L  L+ + N+ + E     +  L   +D   N+   ++  +    +  L  S NK +
Sbjct: 126 NPLLTYLNCARNTLT-EIDVSHNTQLT-ELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183

Query: 505 GQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTS 564
            +L   +S   LL  L+   NN+T +    L+Q   L  L+  +  L   I   ++ LT 
Sbjct: 184 -ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQ 234

Query: 565 LQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLS 624
           L   D S N L     S+   L  +    + L  +                         
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID-----------------------L 271

Query: 625 SKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDL 684
           + +  +         ++       +     L  L+     +   +         L  L L
Sbjct: 272 THNTQLIYFQAEGCRKIK---ELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYL 325

Query: 685 SHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           ++  L+ ++    +   +L SL   N  + 
Sbjct: 326 NNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 78/482 (16%), Positives = 149/482 (30%), Gaps = 81/482 (16%)

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
             +       +          LA +T L   N+++T      I  +T L  L   SN ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77

Query: 293 GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTE 352
             +   L     +  L    NKL    N+ + P   LT L+  +  +   + +  S    
Sbjct: 78  -TLD--LSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT-KLDV--SQNPL 128

Query: 353 LTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG 412
           LT+L+ + N L  T         L  +    N         +     L+ L  S N  + 
Sbjct: 129 LTYLNCARNTL--TEIDVSHNTQLTELDCHLNKKITK--LDVTPQTQLTTLDCSFNKITE 184

Query: 413 ELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVG 472
                + Q+  +  L   +NN +      ++   +L  LD S+N  + E        L  
Sbjct: 185 L---DVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EIDVTPLTQLT- 236

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
           + D S N  + E+  S    +  L   +         +L++ + L +          E  
Sbjct: 237 YFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGCRKIKELD 292

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDT 592
             ++  + L +L+ +   +   +   LS    L  L L+N  L                 
Sbjct: 293 --VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTEL----------------- 330

Query: 593 PSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSL 652
            + L       S   +++ L                         N  +  +  S +G +
Sbjct: 331 -TELD-----VSHNTKLKSL----------------------SCVNAHIQ-DFSS-VGKI 360

Query: 653 KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNK 712
             L +   +  Q       T  N     T+ +S + L         +         + N 
Sbjct: 361 PALNNNFEAEGQTITMPKETLTNN--SLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNT 418

Query: 713 LS 714
           ++
Sbjct: 419 IT 420

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 55/365 (15%), Positives = 115/365 (31%), Gaps = 80/365 (21%)

Query: 366 TYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM 425
           ++  W  + N  + + +   +  +      +   L+ L    ++ + ++   I + T + 
Sbjct: 10  SFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLT 67

Query: 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEV 485
            L+ +SNN +      +S    L  L   +N  +          L  +++  +N+ + ++
Sbjct: 68  KLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLDVTPLTKLT-YLNCDTNKLT-KL 121

Query: 486 PSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLN 545
             S    +  L+ + N  +     ++S+ + L  LD H N    +    ++  + L  L+
Sbjct: 122 DVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLD 176

Query: 546 LRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSF 605
                +       +S    L  L+   NN+     +    L                   
Sbjct: 177 CSFNKIT---ELDVSQNKLLNRLNCDTNNITKLDLNQNIQLT------------------ 215

Query: 606 PVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQL 665
                                       +D S+N+L+ EI   +  L  L   + S N L
Sbjct: 216 ---------------------------FLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL 245

Query: 666 QGNIPSTFGNLEIL-------ETLDLSHNSLSGKI---------PQTFAKLQQLTSLYLS 709
                ST   L  L         +DL+HN+                      QL  L   
Sbjct: 246 TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQ 305

Query: 710 NNKLS 714
              ++
Sbjct: 306 AAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 36/182 (19%), Positives = 58/182 (31%), Gaps = 20/182 (10%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
            L  LD S N +  E+       LT+LTY D   N L     S L  L     L      
Sbjct: 213 QLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTT---LHCIQTD 265

Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
           +       +     L     +      ++  ++ + T L+ L  +    +    L L Q 
Sbjct: 266 LL---EIDLTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT---ELDLSQN 317

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290
            KL  L L    L+ E+  D+     +  L+  N  +      S+  +  L         
Sbjct: 318 PKLVYLYLNNTELT-EL--DVSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQ 372

Query: 291 LS 292
             
Sbjct: 373 TI 374

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.3 bits (234), Expect = 3e-20
 Identities = 68/402 (16%), Positives = 136/402 (33%), Gaps = 40/402 (9%)

Query: 182 LKNLKQLILDDNL--IQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQ 239
             +L Q    + +        +              +N+    +   L+   +   L L 
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQLN 67

Query: 240 RNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWL 299
           R +LS  +P+++     IT+L ++ NAL  ++P+   ++  L       +     +ST  
Sbjct: 68  RLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYL-------DACDNRLSTLP 116

Query: 300 FDLQGMKSLYLGGNKLKWNDNVSIVPK--CMLTELSLRSCSVRGSIPLWLSTQTELTFLD 357
                +K L +  N+L        +P+   +L  ++  +  +   +P      T L  L 
Sbjct: 117 ELPASLKHLDVDNNQLTM------LPELPALLEYINADNNQLT-MLPELP---TSLEVLS 166

Query: 358 LSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLS----VLVLSRNNFSGE 413
           +  N+L    P+     +L  + +S N+L  SLP     + +            N  +  
Sbjct: 167 VRNNQLT-FLPELPE--SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-H 221

Query: 414 LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGH 473
           +PE I        ++L  N  S  + +S+S              FS       +      
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
            D  +  F     S            E+  +      L  LS       + +    +  A
Sbjct: 282 -DAVTAWFPENKQSDVSQIWHAFEHEEH--ANTFSAFLDRLSDTVSA-RNTSGFREQVAA 337

Query: 534 FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575
           +L +LS+   L  ++ A+    T+   +  +L   +L    L
Sbjct: 338 WLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.5 bits (232), Expect = 5e-20
 Identities = 56/354 (15%), Positives = 109/354 (30%), Gaps = 70/354 (19%)

Query: 397 SRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIY--RLLVLDLS 454
           + N S+   S  N           +                    +      +   L L+
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67

Query: 455 NNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNL 514
             + S   P      +   ++I+ N     +P     ++  L   +N+ S  LP+  ++L
Sbjct: 68  RLNLS-SLPDNLPPQIT-VLEITQNALI-SLPELPA-SLEYLDACDNRLS-TLPELPASL 122

Query: 515 SLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNN 574
              +HLD+ +N LT   P      + L+ +N  N  L    T      TSL++L + NN 
Sbjct: 123 ---KHLDVDNNQLT-MLP---ELPALLEYINADNNQL----TMLPELPTSLEVLSVRNNQ 171

Query: 575 LLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLM 634
           L   +P    +L+                                              +
Sbjct: 172 L-TFLPELPESLE---------------------------------------------AL 185

Query: 635 DLSNNQLSGEIPSSLGSLKGLKS----LNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS 690
           D+S N L   +P+        +          N++  +IP    +L+   T+ L  N LS
Sbjct: 186 DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243

Query: 691 GKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQ 744
            +I ++ ++       +      S    +   + R +   + A         + 
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVS 297

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.4 bits (224), Expect = 5e-19
 Identities = 58/349 (16%), Positives = 110/349 (31%), Gaps = 46/349 (13%)

Query: 105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANLTR-----------------LTYLDLKDNNL 147
               I     L L+  ++   +P      +T                  L YLD  DN L
Sbjct: 54  KECLINQFSELQLNRLNLS-SLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRL 112

Query: 148 NGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLT 207
           + ++P    +L++   LD+  N    +L+        L+ +  D+N +   +P    +L 
Sbjct: 113 S-TLPELPASLKH---LDVDNN----QLTMLPELPALLEYINADNNQLT-MLPELPTSLE 163

Query: 208 NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN----ITILALS 263
               LS+R N+ +  +P        LE LD+  N L   +P       +           
Sbjct: 164 ---VLSVRNNQLT-FLP---ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 264 NNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSI 323
            N +T  IP++I ++    T+ L+ N LS  I   L         +        +D    
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQN 274

Query: 324 VPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSD 383
                L +            P    +     +      E   T+  +L  L+      + 
Sbjct: 275 TLHRPLADAVTA------WFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNT 328

Query: 384 NMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSN 432
           +     +   L +    + L       + +  E+     ++    L   
Sbjct: 329 SGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKT 377

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 80.8 bits (199), Expect = 6e-16
 Identities = 65/314 (20%), Positives = 122/314 (38%), Gaps = 36/314 (11%)

Query: 286 LDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM---LTELSLRSCSVRGS 342
              N +SG  + +       +   L G     N+ VS++ +C+    +EL L   ++  S
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENR--NEAVSLLKECLINQFSELQLNRLNLS-S 73

Query: 343 IPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSV 402
           +P  L  Q  +T L++++N L  + P+  +  +L  +   DN L+ +LP       +L  
Sbjct: 74  LPDNLPPQ--ITVLEITQNALI-SLPELPA--SLEYLDACDNRLS-TLPELP---ASLKH 124

Query: 403 LVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEF 462
           L +  N  +  LPE          +   +N  +  +P+  ++   L VL + NN  +   
Sbjct: 125 LDVDNNQLT-MLPELPALLEY---INADNNQLT-MLPELPTS---LEVLSVRNNQLT-FL 175

Query: 463 PAFGSDSLVGHVDISSNRFSGEVPSSFG------VTILMLSLSENKFSGQLPQNLSNLSL 516
           P    +SL   +D+S+N     +P+          T +     EN+ +  +P+N+ +L  
Sbjct: 176 PEL-PESLE-ALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDP 231

Query: 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL 576
              + L DN L+      LSQ ++    +        S   G  N     + D       
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD--GQQNTLHRPLADAVTAWFP 289

Query: 577 GKIPSSFGNLQGMI 590
               S    +    
Sbjct: 290 ENKQSDVSQIWHAF 303

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 1e-14
 Identities = 58/361 (16%), Positives = 113/361 (31%), Gaps = 59/361 (16%)

Query: 86  LDLNNLFPLDSIVTSVVLAPIF-----RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYL 140
           L +NN F L        ++  +              L   +    V       + + + L
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSEL 64

Query: 141 DLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIP 200
            L   NL+ S+P  L     +  L+++ N     L S      +L+ L   DN +   +P
Sbjct: 65  QLNRLNLS-SLPDNLPPQ--ITVLEITQN----ALISLPELPASLEYLDACDNRLS-TLP 116

Query: 201 AEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITIL 260
               +L +L    +  N+ +  +P        LE ++   N L+  +PE   +L    +L
Sbjct: 117 ELPASLKHLD---VDNNQLT-MLPEL---PALLEYINADNNQLT-MLPELPTSL---EVL 165

Query: 261 ALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKS----LYLGGNKLK 316
           ++ NN LT  +P+   +   L  L + +N+L   +          +          N++ 
Sbjct: 166 SVRNNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNL 376
                                     IP  + +      + L +N L     + LS+   
Sbjct: 221 -------------------------HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 377 GTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG 436
                    +  S+      + +  +       F       + Q          +N FS 
Sbjct: 256 -QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSA 314

Query: 437 H 437
            
Sbjct: 315 F 315

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 92.3 bits (230), Expect = 7e-20
 Identities = 92/522 (17%), Positives = 163/522 (31%), Gaps = 126/522 (24%)

Query: 233 LETLDLQRNSLSGE-IPEDIGTLANITILALSNNALT----GAIPQSIRNMTKLVTLRLD 287
           +++LD+Q   LS     E +  L    ++ L +  LT      I  ++R    L  L L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 288 SNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVR----GSI 343
           SN L            G+  +      L+        P C + +LSL++C +     G +
Sbjct: 65  SNELGDV---------GVHCV---LQGLQ-------TPSCKIQKLSLQNCCLTGAGCGVL 105

Query: 344 PLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVL 403
              L T   L  L LS+N L             G  +L + +L             L  L
Sbjct: 106 SSTLRTLPTLQELHLSDNLLGDA----------GLQLLCEGLLDPQC--------RLEKL 147

Query: 404 VLSRNNFSGE----LPETIGQSTSVMVLMLSSNNFSGHVPKSIS-----NIYRLLVLDLS 454
            L   + S      L   +        L +S+N+ +    + +      +  +L  L L 
Sbjct: 148 QLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207

Query: 455 NNSFSGE-----FPAFGSDSLVGHVDISSNRFS-------GEVPSSFGVTILMLSLSENK 502
           +   + +          S + +  + + SN+                   +  L + E  
Sbjct: 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267

Query: 503 FSGQ----LPQNLSNLSLLQHLDLHDNNLTGE-----FPAFLSQLSSLQVLNLRNTALEG 553
            + +    L + L     L+ L L  N L  E         L     L+ L +++ +   
Sbjct: 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327

Query: 554 ----SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEI 609
                 +  L+    L  L +SNN L           QG+    S+L  L          
Sbjct: 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC--QGLGQPGSVLRVL---------- 375

Query: 610 QDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE----IPSSLGSLKGLKSLNLSYNQL 665
                                     L++  +S      + ++L +   L+ L+LS N L
Sbjct: 376 -------------------------WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

Query: 666 QGNIPSTFG-----NLEILETLDLSHNSLSGKIPQTFAKLQQ 702
                            +LE L L     S ++      L++
Sbjct: 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 452

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 91.6 bits (228), Expect = 1e-19
 Identities = 88/510 (17%), Positives = 158/510 (30%), Gaps = 117/510 (22%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLN----GSIPSQLFNLRYLEFLD 165
             + +LD+    +           L +   + L D  L       I S L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 166 LSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS----G 221
           L +N +         G+  + Q +   +               + KLSL+    +    G
Sbjct: 63  LRSNELGD------VGVHCVLQGLQTPS-------------CKIQKLSLQNCCLTGAGCG 103

Query: 222 GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLA-----NITILALSNNALT----GAIP 272
            +  +L  L  L+ L L  N L     + +          +  L L   +L+      + 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 273 QSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTEL 332
             +R       L + +N ++           G++ L      LK          C L  L
Sbjct: 164 SVLRAKPDFKELTVSNNDINEA---------GVRVL---CQGLK-------DSPCQLEAL 204

Query: 333 SLRSCSVR----GSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTG 388
            L SC V       +   ++++  L  L L  N+L           ++G   L   +L  
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG----------DVGMAELCPGLLHP 254

Query: 389 SLPPPLFESRNLSVLVLSRNNFSGE----LPETIGQSTSVMVLMLSSNNFSGHVPKSISN 444
           S          L  L +     + +    L   +    S+  L L+ N       + +  
Sbjct: 255 S--------SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306

Query: 445 I-----YRLLVLDLSNNSFSGEF-----PAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL 494
                  +L  L + + SF+             +  +  + IS+NR         GV  L
Sbjct: 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA-----GVREL 361

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE----FPAFLSQLSSLQVLNLRNTA 550
              L                S+L+ L L D +++        A L    SL+ L+L N  
Sbjct: 362 CQGLG------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409

Query: 551 LEGS----ITDGL-SNLTSLQILDLSNNNL 575
           L  +    + + +      L+ L L +   
Sbjct: 410 LGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 90/518 (17%), Positives = 165/518 (31%), Gaps = 110/518 (21%)

Query: 80  SQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSM---QGEVPGTGFANLTR 136
           S ++  LD+      + +  +     +  ++    + L    +   + +   +       
Sbjct: 2   SLDIQSLDIQC----EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 137 LTYLDLKDNNLNGSIPSQLFNL-----RYLEFLDLSANAIEGK----LSSRVAGLKNLKQ 187
           L  L+L+ N L       +          ++ L L    + G     LSS +  L  L++
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 188 LILDDNLIQGQ-----IPAEIGNLTNLHKLSLRQNKFS--GGIPLS--LLQLRKLETLDL 238
           L L DNL+            +     L KL L     S     PL+  L      + L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 239 QRNSLSGEIPEDIGTL-----ANITILALSNNALT----GAIPQSIRNMTKLVTLRLDSN 289
             N ++      +          +  L L +  +T      +   + +   L  L L SN
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 290 VLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVR----GSIPL 345
            L            GM  L  G             P   L  L +  C +     G +  
Sbjct: 238 KLGDV---------GMAELCPGLLH----------PSSRLRTLWIWECGITAKGCGDLCR 278

Query: 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVL 405
            L  +  L  L L+ NEL             G  +L + +        L     L  L +
Sbjct: 279 VLRAKESLKELSLAGNELGDE----------GARLLCETL--------LEPGCQLESLWV 320

Query: 406 SRNNFSGE----LPETIGQSTSVMVLMLSSNNFSGHVPKSIS-----NIYRLLVLDLSNN 456
              +F+          + Q+  ++ L +S+N       + +          L VL L++ 
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 457 SFSGEFPAFGSDSLVG-----HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNL 511
             S    +  + +L+       +D+S+N          G+  L+ S+ +           
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDA-----GILQLVESVRQPG--------- 426

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQL----SSLQVLN 545
               LL+ L L+D   + E    L  L     SL+V++
Sbjct: 427 ---CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.8 bits (182), Expect = 7e-14
 Identities = 61/408 (14%), Positives = 116/408 (28%), Gaps = 100/408 (24%)

Query: 351 TELTFLDLSENELEGTYPQWLSEL--NLGTVILSDNMLT----GSLPPPLFESRNLSVLV 404
            ++  LD+   EL       L  L      V L D  LT      +   L  +  L+ L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 405 LSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE--- 461
           L  N         + Q        L + +             ++  L L N   +G    
Sbjct: 63  LRSNELGDVGVHCVLQ-------GLQTPSC------------KIQKLSLQNCCLTGAGCG 103

Query: 462 --FPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL-------MLSLSENKFSGQ----LP 508
                  +   +  + +S N             +L        L L     S      L 
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 509 QNLSNLSLLQHLDLHDNNLTGE-----FPAFLSQLSSLQVLNLRNTALE----GSITDGL 559
             L      + L + +N++                  L+ L L +  +       +   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 560 SNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNS 619
           ++  SL+ L L +N L                                 + +L     + 
Sbjct: 224 ASKASLRELALGSNKLGDV-----------------------------GMAELCPGLLHP 254

Query: 620 KRGLSSKSLAIYSLMDLSNNQLSGE----IPSSLGSLKGLKSLNLSYNQLQGN-----IP 670
              L +        + +    ++ +    +   L + + LK L+L+ N+L          
Sbjct: 255 SSRLRT--------LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306

Query: 671 STFGNLEILETLDLSHNSLSGKIPQTFAKL----QQLTSLYLSNNKLS 714
           +       LE+L +   S +      F+ +    + L  L +SNN+L 
Sbjct: 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 67.3 bits (165), Expect = 7e-12
 Identities = 52/333 (15%), Positives = 97/333 (29%), Gaps = 76/333 (22%)

Query: 421 STSVMVLMLSSNNFS-GHVPKSISNIYRLLVLDLSNNSFSGE-----FPAFGSDSLVGHV 474
           S  +  L +     S     + +  + +  V+ L +   +         A   +  +  +
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 475 DISSNRFS-------GEVPSSFGVTILMLSLSENKFSGQ----LPQNLSNLSLLQHLDLH 523
           ++ SN           +   +    I  LSL     +G     L   L  L  LQ L L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 524 DNNLTGE-----FPAFLSQLSSLQVLNLRNTAL--EG--SITDGLSNLTSLQILDLSNNN 574
           DN L            L     L+ L L   +L       +   L      + L +SNN+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 575 LLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLM 634
           +                  + +  L +                        ++L      
Sbjct: 182 I----------------NEAGVRVLCQGLKDS---------------PCQLEAL------ 204

Query: 635 DLSNNQLSGE----IPSSLGSLKGLKSLNLSYNQLQGN-----IPSTFGNLEILETLDLS 685
            L +  ++ +    +   + S   L+ L L  N+L         P        L TL + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 686 HNSLSGK----IPQTFAKLQQLTSLYLSNNKLS 714
              ++ K    + +     + L  L L+ N+L 
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 15/212 (7%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSAN 169
           S   LDLS+N ++  +    F +   L  LDL    +  +I    + +L +L  L L+ N
Sbjct: 29  STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 170 AIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKF-SGGIPLS 226
            I+  L+    +GL +L++L+  +  +   +     G+L  L +L++  N   S  +P  
Sbjct: 87  PIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITI----LALSNNALTGAIPQSIRNMTKLV 282
              L  LE LDL  N +      D+  L  + +    L LS N +   I        +L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 283 TLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
            L LD+N L   +   +FD L  ++ ++L  N
Sbjct: 204 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 12/190 (6%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDD 192
                LDL  N L   + S  F +   L+ LDLS   I+  +       L +L  LIL  
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 193 NLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL-SGEIPED 250
           N IQ  +       L++L KL   +   +      +  L+ L+ L++  N + S ++PE 
Sbjct: 86  NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 251 IGTLANITILALSNNALTGAIPQSIRNMTKL----VTLRLDSNVLSGEISTWLFDLQGMK 306
              L N+  L LS+N +       +R + ++    ++L L  N ++  I    F    +K
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLK 203

Query: 307 SLYLGGNKLK 316
            L L  N+LK
Sbjct: 204 ELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 51/248 (20%), Positives = 87/248 (35%), Gaps = 51/248 (20%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
                   F  ++P +   +   L LS N        +  +   LQ LDL    +     
Sbjct: 11  TYQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNLLGKIPSSFGNLQGMID 591
                LS L  L L    ++ S+  G  S L+SLQ L     NL                
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL---------------- 112

Query: 592 TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQL-SGEIPSSLG 650
             + L            +++L                      ++++N + S ++P    
Sbjct: 113 --ASLE--NFPIGHLKTLKEL----------------------NVAHNLIQSFKLPEYFS 146

Query: 651 SLKGLKSLNLSYNQLQGNIPSTFGNLEILE----TLDLSHNSLSGKIPQTFAKLQQLTSL 706
           +L  L+ L+LS N++Q    +    L  +     +LDLS N ++   P  F +++ L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKEL 205

Query: 707 YLSNNKLS 714
            L  N+L 
Sbjct: 206 ALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLSGKI 693
           DLS N L      S  S   L+ L+LS  ++Q  I    + +L  L TL L+ N +    
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 694 PQTFAKLQQLTSLYLSNNKLSGRIPESP 721
              F+ L  L  L      L+  +   P
Sbjct: 93  LGAFSGLSSLQKLVAVETNLA-SLENFP 119

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 26/236 (11%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
           T      +   +IP+++    +   L LS N L      S  +  +L  L L    +   
Sbjct: 11  TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-T 66

Query: 295 ISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKC-----MLTELSLRSCSVRGSIPLWLS 348
           I    +  L  + +L L GN ++     S+          L +L     ++  S+  +  
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQ-----SLALGAFSGLSSLQKLVAVETNLA-SLENFPI 120

Query: 349 TQ-TELTFLDLSENEL-EGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSV-- 402
                L  L+++ N +     P++ S L NL  + LS N +  S+          + +  
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179

Query: 403 --LVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNN 456
             L LS N  +  +     +   +  L L +N            +  L  + L  N
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 52/250 (20%), Positives = 86/250 (34%), Gaps = 40/250 (16%)

Query: 336 SCSVRG--SIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPP 392
            C       IP  L   T    LDLS N L             L  + LS   +  ++  
Sbjct: 13  QCMELNFYKIPDNLPFST--KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIED 69

Query: 393 PLFES-RNLSVLVLSRNNFSGELPETI-GQSTSVMVLMLSSNNFSGHVPKSISNIYRLLV 450
             ++S  +LS L+L+ N     L        +S+  L+    N +      I ++  L  
Sbjct: 70  GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 451 LDLSNNSFSGEFPAFGS-DSLVG--HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQL 507
           L++++N     F       +L    H+D+SSN+                S+         
Sbjct: 129 LNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ--------------SIYCTDL---- 169

Query: 508 PQNLSNLSLLQ-HLDLHDNNLTGEFPAFLSQLSSLQVLNLRN---TALEGSITDGLSNLT 563
            + L  + LL   LDL  N +         +   L+ L L      ++   I D L++L 
Sbjct: 170 -RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQ 227

Query: 564 SLQILDLSNN 573
               + L  N
Sbjct: 228 K---IWLHTN 234

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 88.7 bits (220), Expect = 4e-19
 Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 11/163 (6%)

Query: 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIE 172
            LDLS+N++           LT L  L L  N+LN  I S+ F  +  L +LDLS+N + 
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 173 GKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNK---FSGGIPLSL 227
             L   + + L+ L+ L+L +N I   +      ++  L KL L QN+   F   +    
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANIT--ILALSNNALT 268
            +L KL  LDL  N L      D+  L       L L NN L 
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.9 bits (197), Expect = 4e-16
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 14/165 (8%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLF--NLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILD 191
           +    LDL  NNL   + ++     L  L  L LS N +   +SS     + NL+ L L 
Sbjct: 39  SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96

Query: 192 DNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED 250
            N +   +   +  +L  L  L L  N        +   + +L+ L L +N +S   P +
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154

Query: 251 I----GTLANITILALSNNALTGAIPQSIRNMTKLV--TLRLDSN 289
           +      L  + +L LS+N L       ++ +   V   L L +N
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 51/212 (24%), Positives = 75/212 (35%), Gaps = 52/212 (24%)

Query: 507 LPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNLRNTALEGSITDG-LSNLTS 564
           +PQ+L   S    LDL  NNL+        ++L++L  L L +  L   I+      + +
Sbjct: 33  VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPN 89

Query: 565 LQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLS 624
           L+ LDLS+N+L                    L     +FS    ++ L            
Sbjct: 90  LRYLDLSSNHL------------------HTLD--EFLFSDLQALEVL------------ 117

Query: 625 SKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGN---LEILET 681
                      L NN +     ++   +  L+ L LS NQ+         +   L  L  
Sbjct: 118 ----------LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167

Query: 682 LDLSHNSLSGKIPQTFAKLQQLT--SLYLSNN 711
           LDLS N L         KL       LYL NN
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.9 bits (171), Expect = 7e-13
 Identities = 47/224 (20%), Positives = 78/224 (34%), Gaps = 53/224 (23%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQN-LSNLSLLQHLDLHDNNLTGEFP 532
           +  S  +    VP S      +L LS N  S    +   + L+ L  L L  N+L     
Sbjct: 23  LSCSKQQLP-NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID 591
                + +L+ L+L +  L  ++ +   S+L +L++L L NN++                
Sbjct: 82  EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI---------------- 124

Query: 592 TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIP----S 647
              ++      F    ++Q L                       LS NQ+S   P     
Sbjct: 125 --VVVD--RNAFEDMAQLQKL----------------------YLSQNQIS-RFPVELIK 157

Query: 648 SLGSLKGLKSLNLSYNQLQGNIPSTFGNLEIL--ETLDLSHNSL 689
               L  L  L+LS N+L+    +    L       L L +N L
Sbjct: 158 DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.5 bits (170), Expect = 9e-13
 Identities = 47/203 (23%), Positives = 69/203 (33%), Gaps = 53/203 (26%)

Query: 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG--LSNLTSLQILDLSNNNL 575
             L      L    P  L   S   +L+L +  L   +      + LT+L  L LS+N+L
Sbjct: 21  NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHL 76

Query: 576 LGKIPS-SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLM 634
              I S +F  +         L  L                                   
Sbjct: 77  -NFISSEAFVPV-------PNLRYL----------------------------------- 93

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
           DLS+N L          L+ L+ L L  N +     + F ++  L+ L LS N +S    
Sbjct: 94  DLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 695 QTFA---KLQQLTSLYLSNNKLS 714
           +      KL +L  L LS+NKL 
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 7e-11
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
            +L  LDLS N +   +    F++L  L  L L +N++   +    F ++  L+ L LS 
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145

Query: 169 N---AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLR 215
           N       +L      L  L  L L  N ++     ++  L    K  L 
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.3 bits (141), Expect = 3e-09
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 11/157 (7%)

Query: 438 VPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVG--HVDISSNRFSGEVPSSF-GVTIL 494
           VP+S+ +     +LDLS+N+ S     +    L     + +S N  +     +F  V  L
Sbjct: 33  VPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90

Query: 495 -MLSLSENKFSGQLPQN-LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRN---T 549
             L LS N     L +   S+L  L+ L L++N++          ++ LQ L L     +
Sbjct: 91  RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 550 ALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNL 586
                +    + L  L +LDLS+N L     +    L
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 233 LETLDLQRNSLSGEIPEDIGT-LANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL 291
              LDL  N+LS    E   T L N+  L LS+N L     ++   +  L  L L SN L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 292 SGEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKC-----MLTELSLRSCSVRGSIP- 344
              +  +LF  LQ ++ L L  N +       +          L +L L    +    P 
Sbjct: 101 H-TLDEFLFSDLQALEVLLLYNNHIV-----VVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

Query: 345 ---LWLSTQTELTFLDLSENELEGTYPQW---LSELNLGTVILSDN 384
                 +   +L  LDLS N+L+         L       + L +N
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.0 bits (211), Expect = 5e-19
 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 7/164 (4%)

Query: 131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL 190
            A +  LTY+ L + N+       +     ++ L ++         + ++GL NL++L +
Sbjct: 40  EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRI 95

Query: 191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPED 250
               +       +  LT+L  L +  +     I   +  L K+ ++DL  N    +I   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MP 154

Query: 251 IGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
           + TL  +  L +  + +       I +  KL  L   S  + G+
Sbjct: 155 LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 10/184 (5%)

Query: 132 ANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILD 191
           +         L  ++      +Q+ +L Y   + L+   +   L+  +    N+K L ++
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTY---ITLANINVT-DLTG-IEYAHNIKDLTIN 74

Query: 192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI 251
           +       P  I  L+NL +L +     +     +L  L  L  LD+  ++    I   I
Sbjct: 75  NIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 252 GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLG 311
            TL  +  + LS N     I   ++ + +L +L +  + +       + D   +  LY  
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAF 189

Query: 312 GNKL 315
              +
Sbjct: 190 SQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 31/206 (15%), Positives = 71/206 (34%), Gaps = 53/206 (25%)

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD--GLSNLTSLQILD 569
           + ++ L ++ L + N+T      +    +++ L + N       T+   +S L++L+ L 
Sbjct: 41  AQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNI----HATNYNPISGLSNLERLR 94

Query: 570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA 629
           +   ++      +   L         L  L                              
Sbjct: 95  IMGKDVTSDKIPNLSGLTS-------LTLL------------------------------ 117

Query: 630 IYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL 689
                D+S++     I + + +L  + S++LSYN    +I      L  L++L++  + +
Sbjct: 118 -----DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGV 171

Query: 690 SGKIPQTFAKLQQLTSLYLSNNKLSG 715
                       +L  LY  +  + G
Sbjct: 172 HDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 33/176 (18%), Positives = 71/176 (40%), Gaps = 10/176 (5%)

Query: 141 DLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIP 200
            LK +  N +IP      +      L  ++      +    + +L  + L +  +     
Sbjct: 7   GLKASQDNVNIPDS--TFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDLTG 61

Query: 201 AEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITIL 260
             I    N+  L++     +   P+S   L  LE L +    ++ +   ++  L ++T+L
Sbjct: 62  --IEYAHNIKDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 261 ALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
            +S++A   +I   I  + K+ ++ L  N    +I   L  L  +KSL +  + + 
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.1 bits (180), Expect = 7e-15
 Identities = 32/205 (15%), Positives = 72/205 (35%), Gaps = 54/205 (26%)

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD--GLSNLTSLQILD 569
           S      +  L  ++         +Q++SL  + L N     ++TD  G+    +++ L 
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANI----NVTDLTGIEYAHNIKDLT 72

Query: 570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA 629
           ++N +      +++  + G       L  L                          + L 
Sbjct: 73  INNIHA-----TNYNPISG-------LSNL--------------------------ERL- 93

Query: 630 IYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL 689
                 +    ++ +   +L  L  L  L++S++    +I +    L  + ++DLS+N  
Sbjct: 94  -----RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 690 SGKIPQTFAKLQQLTSLYLSNNKLS 714
              I      L +L SL +  + + 
Sbjct: 149 ITDI-MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 28/167 (16%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 81  QEVTGLDLNNLFPLDSIVTSVV-LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTY 139
             +T   +N+L  +     +V  L  I    ++  L ++             + L+ L  
Sbjct: 36  ANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLER 92

Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
           L +   ++       L  L  L  LD+S +A +  + +++  L  +  + L  N     I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 200 PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGE 246
              +  L  L  L+++ +       +      KL  L     ++ G+
Sbjct: 153 MP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI 555
           L+++    +      +S LS L+ L +   ++T +    LS L+SL +L++ ++A + SI
Sbjct: 71  LTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 556 TDGLSNLTSLQILDLSNNNLLGKIPSSFGNL 586
              ++ L  +  +DLS N  +  I      L
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDI-MPLKTL 158

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI 555
           L +     +     NLS L+ L  LD+  +         ++ L  +  ++L        I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 556 TDGLSNLTSLQILDLSNNNL 575
              L  L  L+ L++  + +
Sbjct: 153 M-PLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 12/185 (6%)

Query: 395 FESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLS 454
                    +      S     T  Q  S+  + L++ N +      I   + +  L ++
Sbjct: 17  IPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTIN 74

Query: 455 NNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQLPQNLS 512
           N   +   P  G  +L   + I     + +   +     ++ +L +S +     +   ++
Sbjct: 75  NIHATNYNPISGLSNLE-RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 513 NLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD--GLSNLTSLQILDL 570
            L  +  +DL  N    +    L  L  L+ LN++       + D  G+ +   L  L  
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFD----GVHDYRGIEDFPKLNQLYA 188

Query: 571 SNNNL 575
            +  +
Sbjct: 189 FSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
            L+N  ++ ++ + +     +K L ++         +    L  LE L +    ++    
Sbjct: 50  TLANINVT-DL-TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKI 105

Query: 695 QTFAKLQQLTSLYLSNNKLSGRIPES 720
              + L  LT L +S++     I   
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 13/204 (6%)

Query: 234 ETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG 293
           E   L+ +  +  IP+   T        L  ++       +   M  L  + L +  ++ 
Sbjct: 4   EQTGLKASQDNVNIPDS--TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT- 57

Query: 294 EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTEL 353
           +++  +     +K L +        + +S +    L  L +    V       LS  T L
Sbjct: 58  DLTG-IEYAHNIKDLTINNIHATNYNPISGLSN--LERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 354 TFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG 412
           T LD+S +  + +    ++ L  + ++ LS N     +  PL     L  L +  +    
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 413 ELPETIGQSTSVMVLMLSSNNFSG 436
                I     +  L   S    G
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 22/181 (12%), Positives = 58/181 (32%), Gaps = 29/181 (16%)

Query: 351 TELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNN 409
             LT++ L+   +       +    N+  + +++   T     P+    NL  L +   +
Sbjct: 44  NSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKD 99

Query: 410 FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDS 469
            + +    +   TS+ +L +S +     +   I+ + ++  +DLS N    +     +  
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 470 LVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG 529
            +  ++I  +                               + +   L  L      + G
Sbjct: 160 ELKSLNIQFDGVH--------------DYR----------GIEDFPKLNQLYAFSQTIGG 195

Query: 530 E 530
           +
Sbjct: 196 K 196

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.5 bits (214), Expect = 1e-18
 Identities = 54/254 (21%), Positives = 88/254 (34%), Gaps = 27/254 (10%)

Query: 471 VGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSL--LQHLDLHDNNLT 528
           V    I S    G +       +  L+L   + +G  P  L   +   L  L+L + +  
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 529 GEFPAFLSQLS-----SLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSF 583
               A+L++L       L+VL++          + +    +L  LDLS+N  LG+     
Sbjct: 135 T-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193

Query: 584 GNLQGMIDTPSILPTL-PEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS 642
                   T  +L      + +       L       +             +DLS+N L 
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG------------LDLSHNSLR 241

Query: 643 GEIPSSLGS-LKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ 701
               +        L SLNLS+  L+         L +L   DLS+N L    P    +L 
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRLDR-NPS-PDELP 296

Query: 702 QLTSLYLSNNKLSG 715
           Q+ +L L  N    
Sbjct: 297 QVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.8 bits (207), Expect = 1e-17
 Identities = 68/371 (18%), Positives = 116/371 (31%), Gaps = 85/371 (22%)

Query: 334 LRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPP 393
             SC+     P W S       L  ++ EL G         +L  ++   +         
Sbjct: 12  SCSCNFSDPKPDWSSA---FNCLGAADVELYG------GGRSLEYLLKRVDTEADLGQFT 62

Query: 394 -LFESRNLSVLVLSRNNFSGELPETIGQ---STSVMVLMLSSNNFSGHVPKSISNIY--R 447
            + +S +L  L +        +     +    + +  L L +   +G  P  +       
Sbjct: 63  DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122

Query: 448 LLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQL 507
           L +L+L N S++                     +  E+       + +LS+++       
Sbjct: 123 LNILNLRNVSWATRDA-----------------WLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 508 PQNLSNLSLLQHLDLHDNNLTGEFP----AFLSQLSSLQVLNLRN---TALEGSITDGLS 560
            + +     L  LDL DN   GE          +  +LQVL LRN       G  +   +
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 561 NLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSK 620
               LQ LDLS+N+L                             +P ++  L        
Sbjct: 226 ARVQLQGLDLSHNSLRDAAG-------------------APSCDWPSQLNSL-------- 258

Query: 621 RGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILE 680
                         +LS   L  ++P  L +   L  L+LSYN+L  N   +   L  + 
Sbjct: 259 --------------NLSFTGLK-QVPKGLPA--KLSVLDLSYNRLDRN--PSPDELPQVG 299

Query: 681 TLDLSHNSLSG 691
            L L  N    
Sbjct: 300 NLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 5e-15
 Identities = 50/237 (21%), Positives = 77/237 (32%), Gaps = 25/237 (10%)

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLS---NLTSLQ 566
                SL   L   D          + +  SL+ L +R   +   I  G      ++ LQ
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 567 ILDLSNNNLLGKIPSSFGNLQGM---------IDTPSILPTLPEIFSFPVE-IQDLIVNW 616
            L L N  + G  P       G          +   +    L E+  +    ++ L +  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA- 157

Query: 617 KNSKRGLSSKSLAIYS---LMDLSNNQLSGEI-------PSSLGSLKGLKSLNLSYNQLQ 666
           +      S + + ++     +DLS+N   GE        P    +L+ L   N       
Sbjct: 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217

Query: 667 GNIPSTFGNLEILETLDLSHNSLSGKIP-QTFAKLQQLTSLYLSNNKLSGRIPESPQ 722
           G   +       L+ LDLSHNSL       +     QL SL LS   L       P 
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 42/216 (19%), Positives = 70/216 (32%), Gaps = 13/216 (6%)

Query: 86  LDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN 145
           L L NL    +    ++ A    +  L   ++S+ +    +          L  L +   
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 146 NLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVA----GLKNLKQLILDDNL---IQGQ 198
           +       Q+     L  LDLS N   G+     A        L+ L L +       G 
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSLSGEIPEDIGTLANI 257
             A       L  L L  N               +L +L+L    L  ++P+ +     +
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KL 276

Query: 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG 293
           ++L LS N L    P S   + ++  L L  N    
Sbjct: 277 SVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 55/284 (19%), Positives = 99/284 (34%), Gaps = 18/284 (6%)

Query: 120 NSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRV 179
            +   E+ G G +    L  +D + +    +   +  +L+ L        +     + RV
Sbjct: 32  GAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRV 91

Query: 180 AGLKNLKQLILDDNLIQGQIPAEIGNLT--NLHKLSLRQNKFSGGIP----LSLLQLRKL 233
            G+  L++L L++  + G  P  +   T  +L+ L+LR   ++        L       L
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 234 ETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAI-------PQSIRNMTKLVTLRL 286
           + L + +        E +     ++ L LS+N   G         P     +  L     
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 287 DSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC-MLTELSLRSCSVRGSIPL 345
                SG  S        ++ L L  N L+             L  L+L    ++  +P 
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270

Query: 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGS 389
            L  +  L+ LDLS N L+   P       +G + L  N    S
Sbjct: 271 GLPAK--LSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 4e-08
 Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 12/172 (6%)

Query: 81  QEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVP---GTGFANLTRL 137
           Q+     L  L    +   +     +    +L TLDLS N   GE              L
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL 203

Query: 138 TYLDLKDNNLN---GSIPSQLFNLRYLEFLDLSANAIEGKL-SSRVAGLKNLKQLILDDN 193
             L L++  +    G   +       L+ LDLS N++     +        L  L L   
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 194 LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSG 245
            ++ Q+P  +     L  L L  N+       S  +L ++  L L+ N    
Sbjct: 264 GLK-QVPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.0 bits (220), Expect = 2e-18
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 22/257 (8%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
           S+  +  + + ++      G   L  +T L L  N L   I   L NL+ L +L L  N 
Sbjct: 44  SIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENK 98

Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
           I+  LSS +  LK LK L L+ N I   I   + +L  L  L L  NK +    LS  +L
Sbjct: 99  IK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITVLS--RL 152

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290
            KL+TL L+ N +S +I   +  L  +  L LS N ++    +++  +  L  L L S  
Sbjct: 153 TKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQE 208

Query: 291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350
              +      +L          N +K  D   + P+ +  +      +V+  +P + +  
Sbjct: 209 CLNKPINHQSNLVVP-------NTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

Query: 351 TELTFLDLSENELEGTY 367
           + + +  ++  + +  +
Sbjct: 262 SFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 89.0 bits (220), Expect = 2e-18
 Identities = 59/275 (21%), Positives = 107/275 (38%), Gaps = 19/275 (6%)

Query: 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244
           + + I     I+   P          K +L++   +  +  +  +L  ++ +    + + 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 245 GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG 304
             + + I  L N+T L L+ N LT   P  + N+  L  L LD N +  ++S+ L DL+ 
Sbjct: 57  -SV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS-LKDLKK 110

Query: 305 MKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELE 364
           +KSL L  N +   + +  +P+  L  L L +  +       LS  T+L  L L +N++ 
Sbjct: 111 LKSLSLEHNGISDINGLVHLPQ--LESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 166

Query: 365 GTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS 423
              P  L+ L  L  + LS N ++  L   L   +NL VL L       +          
Sbjct: 167 DIVP--LAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQSNLVV 222

Query: 424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSF 458
              +  +  +       S    Y    +      F
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 83.6 bits (206), Expect = 7e-17
 Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 34/206 (16%)

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILD 569
                +     +L   ++T       ++L+S+  +   N+ ++ S+  G+  L ++  L 
Sbjct: 16  PDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 71

Query: 570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS-KSL 628
           L+ N L     +    L         L  L            L  N       L   K L
Sbjct: 72  LNGNKL-----TDIKPLTN-------LKNL--------GWLFLDENKIKDLSSLKDLKKL 111

Query: 629 AIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNS 688
                + L +N +S +I + L  L  L+SL L  N++     +    L  L+TL L  N 
Sbjct: 112 ---KSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQ 164

Query: 689 LSGKIPQTFAKLQQLTSLYLSNNKLS 714
           +S  I    A L +L +LYLS N +S
Sbjct: 165 IS-DIVP-LAGLTKLQNLYLSKNHIS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.8 bits (178), Expect = 2e-13
 Identities = 54/308 (17%), Positives = 96/308 (31%), Gaps = 57/308 (18%)

Query: 422 TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRF 481
              +   L   + +  V    + +  +  +  +N+              V  + ++ N+ 
Sbjct: 21  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKL 77

Query: 482 SGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSL 541
           +   P +    +  L L ENK    L  +L +L  L+ L L  N ++      L  L  L
Sbjct: 78  TDIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISD--INGLVHLPQL 133

Query: 542 QVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE 601
           + L L N  +  +    LS LT L  L L +N +     S    L G       L  L  
Sbjct: 134 ESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI-----SDIVPLAG-------LTKLQN 179

Query: 602 IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS 661
           +                                 LS N +S ++  +L  LK L  L L 
Sbjct: 180 L--------------------------------YLSKNHIS-DL-RALAGLKNLDVLELF 205

Query: 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP 721
             +      +   NL +  T+  +  SL    P+  +         +  +        S 
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSF 263

Query: 722 QMDRQIDP 729
              + +  
Sbjct: 264 IFYQPVTI 271

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.8 bits (170), Expect = 2e-12
 Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 11/196 (5%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +++L  L L  N ++ ++  +   +L +L  L L+ N ++  I   L +L  LE
Sbjct: 80  IKPLTNLKNLGWLFLDENKIK-DL--SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLE 134

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L L  N I   ++  ++ L  L  L L+DN I   I   +  LT L  L L +N  S  
Sbjct: 135 SLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL 190

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
             L+   L+ L+ L+L       +       L     +  ++ +L      S     +  
Sbjct: 191 RALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248

Query: 283 TLRLDSNVLSGEISTW 298
            ++      + E+S  
Sbjct: 249 NVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 9e-10
 Identities = 51/270 (18%), Positives = 103/270 (38%), Gaps = 14/270 (5%)

Query: 347 LSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVL 405
                E    +L +  +        +EL ++  +I +++ +  S+   +    N++ L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFL 72

Query: 406 SRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAF 465
           + N  +   P  +    ++  L L  N        S+ ++ +L  L L +N  S +    
Sbjct: 73  NGNKLTDIKP--LTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLSLEHNGIS-DINGL 127

Query: 466 GSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDN 525
                +  + + +N+ +     S    +  LSL +N+ S      L+ L+ LQ+L L  N
Sbjct: 128 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKN 185

Query: 526 NLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGN 585
           +++ +  A L+ L +L VL L +        +  SNL     +  ++ +L+     S   
Sbjct: 186 HIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDG 243

Query: 586 LQGMIDTPSILPTLPEIFSFPVEIQDLIVN 615
                +    LP      SF       I  
Sbjct: 244 DYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 6e-09
 Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 32/163 (19%)

Query: 555 ITD--GLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDL 612
           I               +L   ++                T + L ++ +I +   +I+ +
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTD------------AVTQNELNSIDQIIANNSDIKSV 58

Query: 613 IVNWKNSKRGLSS-KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS 671
                   +G+    ++   + + L+ N+L+ +I   L +LK L  L L  N+++ ++ S
Sbjct: 59  --------QGIQYLPNV---TKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK-DL-S 103

Query: 672 TFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           +  +L+ L++L L HN +S  I      L QL SLYL NNK++
Sbjct: 104 SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 7e-06
 Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           +  + R+  L TL L  N +         A LT+L  L L  N++  S    L  L+ L+
Sbjct: 146 ITVLSRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLD 200

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L+L +     K  +  + L     +   D  +    P  I +  +  K +++ +     
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFT 258

Query: 223 IPLSLLQ 229
             +S + 
Sbjct: 259 NEVSFIF 265

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 31/247 (12%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
                ++ + E+PS      + L     K         S    L+ +++  N++     A
Sbjct: 14  FLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72

Query: 534 F-LSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID 591
              S L  L  + +        I      NL +LQ L +SN  +                
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI---------------- 116

Query: 592 TPSILPTLPEIFSFPVEIQDLIVNWK------NSKRGLSSKSLAIYSLMDLSNNQLSGEI 645
               LP + +I S    + D+  N        NS  GLS +S+    ++ L+ N +    
Sbjct: 117 --KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV----ILWLNKNGIQEIH 170

Query: 646 PSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTS 705
            S+    +  +      N L+      F        LD+S   +          L++L +
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 706 LYLSNNK 712
               N K
Sbjct: 231 RSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 78.7 bits (194), Expect = 9e-16
 Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 5/184 (2%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSA 168
             L  +++S N +   +    F+NL +L  + ++  N    I  + F NL  L++L +S 
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN 113

Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI--GNLTNLHKLSLRQNKFSGGIPLS 226
             I+               L + DN+    I      G       L L +N        +
Sbjct: 114 TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173

Query: 227 LLQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSIRNMTKLVTLR 285
               +  E      N+L  E+P D+    +   IL +S   +       + N+ KL    
Sbjct: 174 FNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232

Query: 286 LDSN 289
             + 
Sbjct: 233 TYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 17/240 (7%)

Query: 234 ETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG 293
                Q + ++ EIP D+    N   L      L      +      L  + +  N +  
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 294 EISTWLFD-LQGMKSLYL-GGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP-LWLSTQ 350
            I   +F  L  +  + +   N L + +  +      L  L + +  ++  +P +     
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHS 127

Query: 351 TELTFLDLSEN----ELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLS 406
            +   LD+ +N     +E      LS      + L+ N +   +    F    L  L LS
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSF-ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLS 185

Query: 407 RNNFSGELPETI-GQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAF 465
            NN   ELP  +   ++  ++L +S           + N+ +L      N     + P  
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTL 242

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 29/203 (14%)

Query: 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG 577
           +     ++ +T E P+ L    +   L    T L        S    L+ +++S N++L 
Sbjct: 12  RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS---KSLAIYSLM 634
            I                     ++FS   ++ ++ +   N+   ++    ++L     +
Sbjct: 69  VIE-------------------ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109

Query: 635 DLSNNQLSGEIPS-SLGSLKGLKSLNLSYNQLQGNIPS-TFGNLEI-LETLDLSHNSLSG 691
            +SN  +   +P            L++  N     I   +F  L      L L+ N +  
Sbjct: 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168

Query: 692 KIPQTFAKLQQLTSLYLSNNKLS 714
                F   Q        NN L 
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLE 191

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 62/369 (16%), Positives = 111/369 (30%), Gaps = 88/369 (23%)

Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDDNLIQGQ 198
              +++ +   IPS L   R    L      +   +     +G  +L+++ +  N +   
Sbjct: 14  FLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 199 IPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSLSGEIPEDIGT-LA 255
           I A++  NL  LH++ + +      I     Q L  L+ L +    +   +P+       
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSL 128

Query: 256 NITILALSNNALTGAIPQ-SIRNMT-KLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN 313
              +L + +N     I + S   ++ + V L L+ N +  EI    F+   +  L L  N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187

Query: 314 KLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSE 373
                          L EL                  +    LD+S   +          
Sbjct: 188 NN-------------LEELP----------NDVFHGASGPVILDISRTRIH--------- 215

Query: 374 LNLGTVILSDNMLTGSLPPPLFESRNLSVL-VLSRNNFSGELPETIGQSTSVMVLMLSSN 432
                          SLP    E  NL  L   S  N   +LP                 
Sbjct: 216 ---------------SLPSYGLE--NLKKLRARSTYNLK-KLP----------------- 240

Query: 433 NFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVT 492
                   ++  +  L+   L+  S    F  +       H   + +    EV       
Sbjct: 241 --------TLEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQAR 292

Query: 493 ILMLSLSEN 501
               SL+E+
Sbjct: 293 GQRSSLAED 301

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 8e-10
 Identities = 42/293 (14%), Positives = 85/293 (29%), Gaps = 56/293 (19%)

Query: 378 TVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH 437
             +  ++ +T  +P  L   RN   L                    +  + +S N+    
Sbjct: 13  VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 438 VPKSI-SNIYRLLVLDLSNNSFSGEFP--AFGSDSLVGHVDISSNRFSGEVPSSF--GVT 492
           +   + SN+ +L  + +   +        AF +   + ++ IS+              + 
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 493 ILMLSLSENKFSGQLPQN-LSNLS-LLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA 550
            ++L + +N     + +N    LS     L L+ N +     +  +     ++    N  
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 551 LEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQ 610
           LE    D     +   ILD+S   +         NL+                       
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK----------------------- 226

Query: 611 DLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYN 663
                                 L   S   L  ++P +L  L  L   +L+Y 
Sbjct: 227 ---------------------KLRARSTYNLK-KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 31/136 (22%), Positives = 47/136 (34%), Gaps = 11/136 (8%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLT-RLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSA 168
             + LD+  N     +    F  L+     L L  N +   I +  FN  +  E      
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187

Query: 169 NAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLS 226
           N +E +L + V  G      L +    I   +P+    NL  L   S    K    +P +
Sbjct: 188 NNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-T 241

Query: 227 LLQLRKLETLDLQRNS 242
           L +L  L    L   S
Sbjct: 242 LEKLVALMEASLTYPS 257

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.5 bits (207), Expect = 6e-18
 Identities = 59/240 (24%), Positives = 89/240 (37%), Gaps = 47/240 (19%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
           VD SS + +  +PS+       L L  NK S    +    L+ L+ L L+DN L      
Sbjct: 21  VDCSSKKLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 534 FLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDT 592
              +L +L+ L + +  L+ ++  G+   L +L  L L  N  L  +P            
Sbjct: 80  IFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLP------------ 125

Query: 593 PSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL-GS 651
                  P +F    ++  L                       L  N+L   +P  +   
Sbjct: 126 -------PRVFDSLTKLTYL----------------------SLGYNELQ-SLPKGVFDK 155

Query: 652 LKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
           L  LK L L  NQL+      F  L  L+TL L +N L       F  L++L  L L  N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 80.8 bits (200), Expect = 5e-17
 Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 35/204 (17%)

Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK 174
           LDL  N +   +P   F  LT+L  L L DN L  ++P+ +F                  
Sbjct: 42  LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK----------------- 82

Query: 175 LSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLL-QLRK 232
                  LKNL+ L + DN +Q  +P  +   L NL +L L +N+    +P  +   L K
Sbjct: 83  ------ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTK 134

Query: 233 LETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNV 290
           L  L L  N L   +P+ +   L ++  L L NN L   +P+     +T+L TL+LD+N 
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

Query: 291 LSGEISTWLFD-LQGMKSLYLGGN 313
           L   +    FD L+ +K L L  N
Sbjct: 193 LK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 77.3 bits (191), Expect = 8e-16
 Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 52/203 (25%)

Query: 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRN---TALEGSITDGLSNLTSLQILDLSNN 573
            + LDL  N L+        +L+ L++L L +     L   I   L NL +L    +++N
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL---WVTDN 95

Query: 574 NLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSL 633
            L                    LP    +F   V + +L                     
Sbjct: 96  KL------------------QALP--IGVFDQLVNLAEL--------------------- 114

Query: 634 MDLSNNQLSGEIPSSL-GSLKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLSG 691
             L  NQL   +P  +  SL  L  L+L YN+LQ ++P   F  L  L+ L L +N L  
Sbjct: 115 -RLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKR 171

Query: 692 KIPQTFAKLQQLTSLYLSNNKLS 714
                F KL +L +L L NN+L 
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 8/182 (4%)

Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL-QLRKLETLDLQRNS 242
           + K+L L  N +          LT L  L L  NK    +P  +  +L+ LETL +  N 
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96

Query: 243 LSGEIPEDIGT-LANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLF 300
           L   +P  +   L N+  L L  N L  ++P  +  ++TKL  L L  N L   +   +F
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVF 153

Query: 301 D-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLS 359
           D L  +K L L  N+LK     +      L  L L +  ++        +  +L  L L 
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213

Query: 360 EN 361
           EN
Sbjct: 214 EN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
           D S+ +L+  IPS++ +    K L+L  N+L       F  L  L  L L+ N L     
Sbjct: 22  DCSSKKLT-AIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78

Query: 695 QTFAKLQQLTSLYLSNNKLS 714
             F +L+ L +L++++NKL 
Sbjct: 79  GIFKELKNLETLWVTDNKLQ 98

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 19/176 (10%)

Query: 422 TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLV--GHVDISSN 479
                L L SN  S    K+   + +L +L L++N      PA     L     + ++ N
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 480 RFSGEVPSS-FG--VTILMLSLSENKFSGQLPQNL-SNLSLLQHLDLHDNNLT----GEF 531
           +    +P   F   V +  L L  N+    LP  +  +L+ L +L L  N L     G F
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 532 PAFLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNLLGKIPSSFGNL 586
                +L+SL+ L L N  L+  + +G    LT L+ L L NN L      +F +L
Sbjct: 154 ----DKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 59/297 (19%), Positives = 97/297 (32%), Gaps = 101/297 (34%)

Query: 232 KLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL 291
              ++D     L+  IP +I   A+   L L +N L+    ++   +TKL  L L+ N L
Sbjct: 17  NKNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73

Query: 292 SGEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350
              +   +F  L+ +++L++  NKL+       +P  +  +L                  
Sbjct: 74  Q-TLPAGIFKELKNLETLWVTDNKLQ------ALPIGVFDQL------------------ 108

Query: 351 TELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNN 409
             L  L L  N+L+                        SLPP +F+S   L+ L L  N 
Sbjct: 109 VNLAELRLDRNQLK------------------------SLPPRVFDSLTKLTYLSLGYNE 144

Query: 410 FSGELPETIGQS-TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSD 468
               LP+ +    TS+  L L +N        +   +  L  L L NN            
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK--------- 194

Query: 469 SLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDN 525
                                        + E  F         +L  L+ L L +N
Sbjct: 195 ----------------------------RVPEGAFD--------SLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSAN 169
           SL  L L  N ++  VP   F  LT L  L L +N L   +P   F +L  L+ L L  N
Sbjct: 158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 5e-17
 Identities = 50/253 (19%), Positives = 104/253 (41%), Gaps = 19/253 (7%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
           + + +    +++   V     A+L  +T L      +  +I   +  L  L  L+L  N 
Sbjct: 20  NAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQ 74

Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
           I   L+  +  L  + +L L  N +  +  + I  L ++  L L   + +   PL+   L
Sbjct: 75  IT-DLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA--GL 128

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290
             L+ L L  N ++  I   +  L N+  L++ N  ++   P  + N++KL TL+ D N 
Sbjct: 129 SNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184

Query: 291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350
           +S +IS  L  L  +  ++L  N++     ++      L  ++L + ++      + +  
Sbjct: 185 IS-DISP-LASLPNLIEVHLKNNQISDVSPLANTSN--LFIVTLTNQTITNQPVFYNNNL 240

Query: 351 TELTFLDLSENEL 363
                +       
Sbjct: 241 VVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 22/249 (8%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           +  +  + +L+ L+L  N +    P     NLT++T L+L  N L     S +  L+ ++
Sbjct: 56  IEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPL--KNVSAIAGLQSIK 110

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            LDL++  I     + +AGL NL+ L LD N I    P  +  LTNL  LS+   + S  
Sbjct: 111 TLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL 166

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
            PL+   L KL TL    N +S      + +L N+  + L NN ++   P  + N + L 
Sbjct: 167 TPLA--NLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLF 220

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS 342
            + L +  ++ +   +  +L          N +K      I P  +    +  S ++  +
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVP-------NVVKGPSGAPIAPATISDNGTYASPNLTWN 273

Query: 343 IPLWLSTQT 351
           +  +++  +
Sbjct: 274 LTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 47/241 (19%), Positives = 92/241 (38%), Gaps = 36/241 (14%)

Query: 475 DISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAF 534
               +  +  V  +    I  LS      +    + +  L+ L  L+L DN +T   P  
Sbjct: 25  AAGKSNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP-- 80

Query: 535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPS 594
           L  L+ +  L L    L       ++ L S++ LDL++  +     +    L G+ +   
Sbjct: 81  LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQI-----TDVTPLAGLSN--- 130

Query: 595 ILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS-KSLAIYSLMDLSNNQLSGEIPSSLGSLK 653
                       +++  L +N   +   L+   +L     + + N Q+S    + L +L 
Sbjct: 131 ------------LQVLYLDLNQITNISPLAGLTNLQY---LSIGNAQVSDL--TPLANLS 173

Query: 654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
            L +L    N++  +I     +L  L  + L +N +S   P   A    L  + L+N  +
Sbjct: 174 KLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTI 229

Query: 714 S 714
           +
Sbjct: 230 T 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 30/215 (13%)

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILD 569
               L+    +    +N+T       + L  +  L+   T +  +I +G+  L +L  L+
Sbjct: 14  PDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLE 69

Query: 570 LSNNNLLGKIPSSFGNLQGM---------IDTPSILPTLPEIFSFPVEIQDLIVNWKNSK 620
           L +N +     +   NL  +         +   S +  L         I+ L +      
Sbjct: 70  LKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQ-------SIKTLDLT-STQI 119

Query: 621 RGLSS-KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEIL 679
             ++    L+   ++ L  NQ++  I S L  L  L+ L++   Q+  ++ +   NL  L
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKL 175

Query: 680 ETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
            TL    N +S  I    A L  L  ++L NN++S
Sbjct: 176 TTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 49/292 (16%), Positives = 96/292 (32%), Gaps = 57/292 (19%)

Query: 422 TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRF 481
            + + +    +N +     + +++  +  L       +         + +  +++  N+ 
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQI 75

Query: 482 SGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSL 541
           +   P      I  L LS N         ++ L  ++ LDL    +T   P  L+ LS+L
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNL 131

Query: 542 QVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE 601
           QVL L    +  +    L+ LT+LQ L + N  +     S    L         L  L  
Sbjct: 132 QVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQV-----SDLTPLAN-------LSKLTT 177

Query: 602 IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS 661
           +                                   +N++S    S L SL  L  ++L 
Sbjct: 178 L--------------------------------KADDNKISDI--SPLASLPNLIEVHLK 203

Query: 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
            NQ+    P    N   L  + L++ +++ +       L     +   +   
Sbjct: 204 NNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 59/316 (18%), Positives = 107/316 (33%), Gaps = 59/316 (18%)

Query: 399 NLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSF 458
           N   +   ++N +     T      +  L       +    + +  +  L+ L+L +N  
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 459 SGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQ 518
           + +     + + +  +++S N        +   +I  L L+  + +      L+ LS LQ
Sbjct: 76  T-DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQ 132

Query: 519 HLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGK 578
            L L  N +T   P  L+ L++LQ L++ N  +  S    L+NL+ L  L   +N +   
Sbjct: 133 VLYLDLNQITNISP--LAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKI--- 185

Query: 579 IPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSN 638
             S    L         LP L E+                                 L N
Sbjct: 186 --SDISPLAS-------LPNLIEV--------------------------------HLKN 204

Query: 639 NQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFA 698
           NQ+S    S L +   L  + L+   +         NL +   +     +     P T +
Sbjct: 205 NQISDV--SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI--APATIS 260

Query: 699 KLQQLTSLYLSNNKLS 714
                 S  L+ N  S
Sbjct: 261 DNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 57/347 (16%), Positives = 113/347 (32%), Gaps = 90/347 (25%)

Query: 277 NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRS 336
            +   + +    + ++  ++    DL G+ +L   G  +      +I             
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-----TIEG----------- 58

Query: 337 CSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLF 395
                     +     L  L+L +N++    P  L  L  +  + LS N L       + 
Sbjct: 59  ----------VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN--VSAIA 104

Query: 396 ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN 455
             +++  L L+    +      +   +++ VL L  N  +      ++ +  L  L + N
Sbjct: 105 GLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGN 160

Query: 456 NSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLS 515
              S               D++                                 L+NLS
Sbjct: 161 AQVS---------------DLT--------------------------------PLANLS 173

Query: 516 LLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL 575
            L  L   DN ++   P  L+ L +L  ++L+N  +  S    L+N ++L I+ L+N  +
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTI 229

Query: 576 LGKIPSSFGNLQG--MIDTPSILPTLPEIFSFPVEIQDLIVNWKNSK 620
             +      NL    ++  PS  P  P   S         + W  + 
Sbjct: 230 TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 50/203 (24%), Positives = 69/203 (33%), Gaps = 46/203 (22%)

Query: 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL 576
              L L +N L     A L   + L  LNL    L  +       L  L  LDLS+N L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQL- 89

Query: 577 GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDL 636
             +P     L          P L            L                      D+
Sbjct: 90  QSLPLLGQTL----------PAL----------TVL----------------------DV 107

Query: 637 SNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQT 696
           S N+L+     +L  L  L+ L L  N+L+   P        LE L L++N+L+      
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGL 167

Query: 697 FAKLQQLTSLYLSNNKLSGRIPE 719
              L+ L +L L  N L   IP+
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 44/208 (21%), Positives = 66/208 (31%), Gaps = 49/208 (23%)

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS 571
           S ++    ++    NLT   P  L       +L+L    L       L   T L  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIY 631
              L                      T  ++      +  L                   
Sbjct: 64  RAEL----------------------TKLQVDGTLPVLGTL------------------- 82

Query: 632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
              DLS+NQL   +P    +L  L  L++S+N+L          L  L+ L L  N L  
Sbjct: 83  ---DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 692 KIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
             P       +L  L L+NN L+  +P 
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 9/134 (6%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSAN 169
            L TLDLS+N +Q  +P      L  LT LD+  N L  S+P      L  L+ L L  N
Sbjct: 78  VLGTLDLSHNQLQ-SLPLL-GQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134

Query: 170 AIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSL 227
            ++  L   +      L++L L +N +  ++PA +   L NL  L L++N     IP   
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 228 LQLRKLETLDLQRN 241
                L    L  N
Sbjct: 192 FGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 53/221 (23%), Positives = 82/221 (37%), Gaps = 35/221 (15%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
            V+      +  +P        +L LSEN         L   + L  L+L    LT +  
Sbjct: 14  EVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ 71

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPS----SFGNLQG 588
                L  L  L+L +  L+ S+      L +L +LD+S N L   +P       G LQ 
Sbjct: 72  VD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQE 128

Query: 589 MIDTPSILPTLPE-IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPS 647
           +    + L TLP  + +   +++ L                       L+NN L+ E+P+
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKL----------------------SLANNNLT-ELPA 165

Query: 648 SL-GSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHN 687
            L   L+ L +L L  N L       FG+   L    L  N
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 50/203 (24%), Positives = 76/203 (37%), Gaps = 31/203 (15%)

Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL 243
           +   L L +NL+     A +   T L +L+L + + +  + +    L  L TLDL  N L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL 89

Query: 244 SGEIPEDIGTLANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLFD- 301
              +P    TL  +T+L +S N LT ++P    R + +L  L L  N L   +   L   
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146

Query: 302 LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSEN 361
              ++ L L  N L      + +P  +L  L                    L  L L EN
Sbjct: 147 TPKLEKLSLANNNL------TELPAGLLNGL------------------ENLDTLLLQEN 182

Query: 362 ELEGTYPQWLSELNLGTVILSDN 384
            L      +     L    L  N
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 38/228 (16%)

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
              ++  + +L+  +P D+    + TIL LS N L      ++   T+L  L LD   L+
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 293 GEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT 351
                 +   L  + +L L  N+L+                         S+PL   T  
Sbjct: 69  ---KLQVDGTLPVLGTLDLSHNQLQ-------------------------SLPLLGQTLP 100

Query: 352 ELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNN 409
            LT LD+S N L       L  L  L  + L  N L  +LPP L      L  L L+ NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159

Query: 410 FSGELPETIGQS-TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNN 456
            + ELP  +     ++  L+L  N+    +PK     + L    L  N
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 10/202 (4%)

Query: 375 NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNF 434
           +   V      LT +LPP L   ++ ++L LS N        T+   T +  L L     
Sbjct: 11  SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF-GVTI 493
           +  +      +  L  LDLS+N          +   +  +D+S NR +     +  G+  
Sbjct: 68  T-KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125

Query: 494 L-MLSLSENKFSGQLPQNL-SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTAL 551
           L  L L  N+    LP  L +    L+ L L +NNLT      L+ L +L  L L+  +L
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 552 EGSITDGLSNLTSLQILDLSNN 573
             +I  G      L    L  N
Sbjct: 185 Y-TIPKGFFGSHLLPFAFLHGN 205

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 82.1 bits (202), Expect = 2e-16
 Identities = 45/230 (19%), Positives = 75/230 (32%), Gaps = 26/230 (11%)

Query: 497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT 556
            +          ++ +    L   +L     T    + L     LQ L   N     +I 
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII 389

Query: 557 DGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNW 616
             +  L  L     +              L+ +   P     L ++ S  +    ++   
Sbjct: 390 LLMRALDPLLYEKETLQYF--------STLKAVD--PMRAAYLDDLRSKFLLENSVLKME 439

Query: 617 KNSKRGLSSKSLAIYSL-----------MDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQL 665
               R L      +  L           +DLS+N+L   +P +L +L+ L+ L  S N L
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 498

Query: 666 QGNIPSTFGNLEILETLDLSHNSLSG-KIPQTFAKLQQLTSLYLSNNKLS 714
           + N+     NL  L+ L L +N L      Q      +L  L L  N L 
Sbjct: 499 E-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 6e-12
 Identities = 52/258 (20%), Positives = 90/258 (34%), Gaps = 30/258 (11%)

Query: 318 NDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLG 377
            +  S V  C L   SL     + +  +  +         L ++  E       ++  L 
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLF 352

Query: 378 TVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH 437
              LS    T  L   L   + L  L          +           +L++ + +   +
Sbjct: 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTI-----------ILLMRALDPLLY 400

Query: 438 VPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLS 497
             +++     L  +D    ++  +               S       V       + +L 
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDL-------------RSKFLLENSVLKMEYADVRVLH 447

Query: 498 LSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD 557
           L+    +  +  +L  L L+ HLDL  N L    P  L+ L  L+VL   + ALE ++ D
Sbjct: 448 LAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV-D 502

Query: 558 GLSNLTSLQILDLSNNNL 575
           G++NL  LQ L L NN L
Sbjct: 503 GVANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.2 bits (158), Expect = 4e-11
 Identities = 50/309 (16%), Positives = 100/309 (32%), Gaps = 40/309 (12%)

Query: 57  LETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLD 116
           L   + +     W     R+R     V   DL      D +             S     
Sbjct: 275 LLMVDEAPLSVEWRTPDGRNR--PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV 332

Query: 117 LSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLS 176
           L  +  +        A   +L   +L        + S+L + + L+ L+         L 
Sbjct: 333 LLKDRPECWCRD--SATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK---WCLL 386

Query: 177 SRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETL 236
           + +  ++ L  L+ +   +Q     +  +      L   ++KF     +  ++   +  L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 237 DLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEIS 296
            L    L+  +   +  L  +T L LS+N L  A+P ++  +  L  L+   N     + 
Sbjct: 447 HLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN----ALE 499

Query: 297 TW--LFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELT 354
               + +L  ++ L L  N+L+ +  +  +  C                         L 
Sbjct: 500 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSC-----------------------PRLV 536

Query: 355 FLDLSENEL 363
            L+L  N L
Sbjct: 537 LLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.2 bits (158), Expect = 5e-11
 Identities = 43/279 (15%), Positives = 82/279 (29%), Gaps = 20/279 (7%)

Query: 5   SLLLATLLLSFSILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSS 64
           +LLL       S+   T           L +  +  L D     +   +  G ++     
Sbjct: 273 TLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV 332

Query: 65  DCCRWEMVRCRSRGPSQEVTGLDLNNLFP------LDSIVTSVVLAPIFRIRSLMTLDLS 118
                    CR     +++   +L+          L+S      L P  +   L  + L 
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 392

Query: 119 YNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQ--------LFNLRYLEFLDLSANA 170
                           + L  +D         + S+              +  L L+   
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKD 452

Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
           +   L   +  L  +  L L  N ++  +P  +  L  L  L    N     +   +  L
Sbjct: 453 LT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANL 507

Query: 231 RKLETLDLQRNSLSG-EIPEDIGTLANITILALSNNALT 268
            +L+ L L  N L      + + +   + +L L  N+L 
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 1e-10
 Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 7/124 (5%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL 194
             +  L L   +L  ++   L  L  +  LDLS N +   L   +A L+ L+ L   DN 
Sbjct: 441 ADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497

Query: 195 IQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT 253
           ++  +   + NL  L +L L  N+         L+   +L  L+LQ NSL  +       
Sbjct: 498 LE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQER 554

Query: 254 LANI 257
           LA +
Sbjct: 555 LAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 1e-10
 Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 15/163 (9%)

Query: 81  QEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYL 140
           + V  +    L  L S               +  L L++  +   +       L  +T+L
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHL 468

Query: 141 DLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIP 200
           DL  N L  ++P  L  LR LE L  S NA+E  +   VA L  L++L+L +N +Q Q  
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ-QSA 524

Query: 201 A--EIGNLTNLHKLSLRQNKFS------GGIPLSLLQLRKLET 235
           A   + +   L  L+L+ N           +   L  +  + T
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 2e-10
 Identities = 50/302 (16%), Positives = 89/302 (29%), Gaps = 50/302 (16%)

Query: 366 TYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM 425
             P  +   +L    L+D +   +       S +    VL ++               + 
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLF 352

Query: 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEV 485
              LS    S  +   + +   L  L+  N                   +  + ++   +
Sbjct: 353 RCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411

Query: 486 PSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLN 545
            +   +    L    +KF  +        + ++ L L   +LT      L QL  +  L+
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LCHLEQLLLVTHLD 469

Query: 546 LRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSF 605
           L +  L  ++   L+ L  L++L  S+N L      +   +         LP L      
Sbjct: 470 LSHNRLR-ALPPALAALRCLEVLQASDNAL-----ENVDGVAN-------LPRL------ 510

Query: 606 PVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSG-EIPSSLGSLKGLKSLNLSYNQ 664
               Q+L                       L NN+L        L S   L  LNL  N 
Sbjct: 511 ----QEL----------------------LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

Query: 665 LQ 666
           L 
Sbjct: 545 LC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 3e-10
 Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 8/201 (3%)

Query: 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL 576
           L    L+D      F    +   S +   L     E    D  +    L   +LS     
Sbjct: 304 LPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVEKST 362

Query: 577 GKIPSSFGNLQGMID-TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAI--YSL 633
             + S   + + + +  P     L  I      +  L+   +  +   + K++     + 
Sbjct: 363 -VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 634 MDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI 693
           +D   ++   E          ++ L+L++  L   +      L ++  LDLSHN L   +
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-AL 478

Query: 694 PQTFAKLQQLTSLYLSNNKLS 714
           P   A L+ L  L  S+N L 
Sbjct: 479 PPALAALRCLEVLQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 44/252 (17%), Positives = 83/252 (32%), Gaps = 12/252 (4%)

Query: 207 TNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA 266
            +L   SL          +        +   L ++        D  T   +    LS   
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEK 360

Query: 267 LTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPK 326
            T  +   + +  +L  L  ++      I   +  ++ +  L      L++   +  V  
Sbjct: 361 ST-VLQSELESCKELQELEPENKWCLLTI---ILLMRALDPLLYEKETLQYFSTLKAVDP 416

Query: 327 CMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNM 385
                L            +      ++  L L+  +L  T    L +L  +  + LS N 
Sbjct: 417 MRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNR 474

Query: 386 LTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH-VPKSISN 444
           L  +LPP L   R L VL  S N     +   +     +  L+L +N        + + +
Sbjct: 475 LR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVS 531

Query: 445 IYRLLVLDLSNN 456
             RL++L+L  N
Sbjct: 532 CPRLVLLNLQGN 543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 23/238 (9%)

Query: 65  DCCRWEMVRCRSRG------PSQEVTGLDLNNLFPLDSIVTSVVLAPIFR-IRSLMTLDL 117
           +C + E  R   +              L L     L +I +       F  + ++  + +
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIET-HLRTIPSHA-----FSNLPNISRIYV 62

Query: 118 SYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEG-KL 175
           S +    ++    F NL+++T++++++      I       L  L+FL +    ++    
Sbjct: 63  SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122

Query: 176 SSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTN-LHKLSLRQNKFSGGIPLSLLQLRKL 233
            ++V        L + DN     IP      L N    L L  N F+  +        KL
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181

Query: 234 ETLDLQRNSLSGEIPEDI--GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289
           + + L +N     I +D   G  +  ++L +S  ++T A+P     +  L  L   + 
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG--LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 37/247 (14%), Positives = 73/247 (29%), Gaps = 48/247 (19%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
              ++       +PS    +   L L E           SNL  +  + +  +    +  
Sbjct: 15  DFRVTCKDIQ-RIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE 72

Query: 533 AFL-SQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMI 590
           +     LS +  + +RNT     I    L  L  L+ L + N  L               
Sbjct: 73  SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL--------------- 117

Query: 591 DTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLG 650
               + P L +++S                          + L    N  ++    ++  
Sbjct: 118 ---KMFPDLTKVYSTD----------------------IFFILEITDNPYMTSIPVNAFQ 152

Query: 651 SL-KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQ-TFAKLQQ-LTSLY 707
            L     +L L  N    ++     N   L+ + L+ N     I +  F  +    + L 
Sbjct: 153 GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 708 LSNNKLS 714
           +S   ++
Sbjct: 212 VSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 38/212 (17%), Positives = 82/212 (38%), Gaps = 24/212 (11%)

Query: 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNL-RNTALEGSITDGL-SNLTSLQILDLSNNN 574
            Q L L + +L        S L ++  + +  +  L+  +      NL+ +  +++ N  
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTR 91

Query: 575 LLGKIPSS-FGNLQ-----GMIDTP-SILPTLPEIFSFPV-EIQDLIVNWKNSK------ 620
            L  I       L      G+ +T   + P L +++S  +  I ++  N   +       
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 621 RGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS-TFGNL-EI 678
           +GL +++L     + L NN  +  +     +   L ++ L+ N+    I    FG +   
Sbjct: 152 QGLCNETL----TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 679 LETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN 710
              LD+S  S++    +    L++L +     
Sbjct: 207 PSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 35/234 (14%)

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
            E   +    +   IP       +   L L    L      +  N+  +  + +  +V  
Sbjct: 13  EEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 293 GEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT 351
            ++ +  F  L  +  + +   +     N++ +    L EL                   
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTR-----NLTYIDPDALKEL------------------P 105

Query: 352 ELTFLDLSENELE--GTYPQWLSELNLGTVILSDNMLTGSLPPPLFE--SRNLSVLVLSR 407
            L FL +    L+      +  S      + ++DN    S+P   F+        L L  
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 408 NNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSI-SNIYRLL-VLDLSNNSFS 459
           N F+  +       T +  + L+ N +   + K     +Y    +LD+S  S +
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 637 SNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLSGKIPQ 695
            +  L      S  +L  +  + +   +    I       L +L+ L + +  L    P 
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD 122

Query: 696 T--FAKLQQLTSLYLSNNKLSGRIPE 719
                       L +++N     IP 
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPV 148

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIE 172
            + L  N+++  +P   F+   +L  +DL +N ++  +    F  LR L  L L  N I 
Sbjct: 36  EIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 173 GKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQL 230
            +L   +  GL +L+ L+L+ N I   +  +   +L NL+ LSL  NK       +   L
Sbjct: 94  -ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 231 RKLETLDLQRN 241
           R ++T+ L +N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
            L  N +    P +    K L+ ++LS NQ+    P  F  L  L +L L  N ++    
Sbjct: 38  RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97

Query: 695 QTFAKLQQLTSLYLSNNKLSGRIPE 719
             F  L  L  L L+ NK++  +  
Sbjct: 98  SLFEGLFSLQLLLLNANKIN-CLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 29/80 (36%), Positives = 39/80 (48%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
           DLSNNQ+S   P +   L+ L SL L  N++     S F  L  L+ L L+ N ++    
Sbjct: 62  DLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121

Query: 695 QTFAKLQQLTSLYLSNNKLS 714
             F  L  L  L L +NKL 
Sbjct: 122 DAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 48/176 (27%)

Query: 539 SSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILP 597
            ++  + L    ++  I  G  S    L+ +DLSNN +                      
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI---------------------S 69

Query: 598 TLPE-IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL-GSLKGL 655
            L    F     +  L                       L  N+++ E+P SL   L  L
Sbjct: 70  ELAPDAFQGLRSLNSL----------------------VLYGNKIT-ELPKSLFEGLFSL 106

Query: 656 KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
           + L L+ N++       F +L  L  L L  N L      TF+ L+ + +++L+ N
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 3/105 (2%)

Query: 472 GHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEF 531
             VD      + E+P++   TI  + L +N      P   S    L+ +DL +N ++   
Sbjct: 14  NIVDCRGKGLT-EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72

Query: 532 PAFLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNL 575
           P     L SL  L L    +   +   L   L SLQ+L L+ N +
Sbjct: 73  PDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKI 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 656 KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
             + L  N ++   P  F   + L  +DLS+N +S   P  F  L+ L SL L  NK++
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 32/179 (17%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
            +D +   L+ EIP ++     IT + L  N +    P +     KL  + L +N +S E
Sbjct: 15  IVDCRGKGLT-EIPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-E 70

Query: 295 ISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTEL 353
           ++   F  L+ + SL L GNK+        +PK +   L                    L
Sbjct: 71  LAPDAFQGLRSLNSLVLYGNKIT------ELPKSLFEGL------------------FSL 106

Query: 354 TFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNF 410
             L L+ N++         +L NL  + L DN L  ++    F   R +  + L++N F
Sbjct: 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 23/153 (15%)

Query: 422 TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRF 481
            ++  + L  N      P + S   +L  +DLSNN  S               +++ + F
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---------------ELAPDAF 76

Query: 482 SGEVPSSFGVTILMLSLSENKFSGQLPQNL-SNLSLLQHLDLHDNNLTGEFPAFLSQLSS 540
            G        ++  L L  NK + +LP++L   L  LQ L L+ N +          L +
Sbjct: 77  QGLR------SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129

Query: 541 LQVLNLRNTALEGSITDGLSNLTSLQILDLSNN 573
           L +L+L +  L+       S L ++Q + L+ N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.3 bits (183), Expect = 8e-15
 Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 23/225 (10%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P   + + +  +L   S+   V       L+ +   +  ++N+     + +     L+
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNI--QSLAGMQFFTNLK 66

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L LS N I   LS  +  L  L++L ++ N ++            L +L L  N+    
Sbjct: 67  ELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRDT 121

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
             L    L+ LE L ++ N L   I   +G L+ + +L L  N +T      +  + K+ 
Sbjct: 122 DSLI--HLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVN 175

Query: 283 TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC 327
            + L       E   +  +L          N +K  D   I P  
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYIT-------NTVKDPDGRWISPYY 213

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 49/205 (23%), Positives = 83/205 (40%), Gaps = 33/205 (16%)

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILD 569
               L+     +L   ++T        +LS +Q  N  N+ +      G+   T+L+ L 
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELH 69

Query: 570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA 629
           LS+N +     S    L+        L  L E+         +  N   +  G+ S  L 
Sbjct: 70  LSHNQI-----SDLSPLKD-------LTKLEEL--------SVNRNRLKNLNGIPSACL- 108

Query: 630 IYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSL 689
             S + L NN+L      SL  LK L+ L++  N+L+ +I    G L  LE LDL  N +
Sbjct: 109 --SRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEI 162

Query: 690 SGKIPQTFAKLQQLTSLYLSNNKLS 714
           +        +L+++  + L+  K  
Sbjct: 163 TNTGG--LTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 40/219 (18%), Positives = 85/219 (38%), Gaps = 35/219 (15%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI 555
            +L +   +     +   LS +Q+ +  ++N+       +   ++L+ L+L +  +  S 
Sbjct: 24  QNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQI--SD 77

Query: 556 TDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVN 615
              L +LT L+ L ++ N L      +   +            L  +F    E++D    
Sbjct: 78  LSPLKDLTKLEELSVNRNRL-----KNLNGIP--------SACLSRLFLDNNELRDT--- 121

Query: 616 WKNSKRGLSS-KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFG 674
                  L   K+L I   + + NN+L   I   LG L  L+ L+L  N++  N      
Sbjct: 122 -----DSLIHLKNLEI---LSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT-NT-GGLT 169

Query: 675 NLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
            L+ +  +DL+      +  +   +L    ++   + + 
Sbjct: 170 RLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 18/197 (9%)

Query: 214 LRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQ 273
            R    +   P     L      +L + S++  +      L+ +      N+ +      
Sbjct: 4   QRPTPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQ--SLA 57

Query: 274 SIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELS 333
            ++  T L  L L  N +S ++S  L DL  ++ L +  N+LK   N++ +P   L+ L 
Sbjct: 58  GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK---NLNGIPSACLSRLF 112

Query: 334 LRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPP 392
           L +  +R +  L       L  L +  N+L+      L  L  L  + L  N +T     
Sbjct: 113 LDNNELRDTDSL--IHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITN--TG 166

Query: 393 PLFESRNLSVLVLSRNN 409
            L   + ++ + L+   
Sbjct: 167 GLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 59/195 (30%)

Query: 522 LHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD--GLSNLTSLQILDLSNNNLLGKI 579
                +   FP     L++    NL       S+TD      L+ +Q  +  N+N+    
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNI---- 53

Query: 580 PSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNN 639
             S   +Q           L E+                                 LS+N
Sbjct: 54  -QSLAGMQF-------FTNLKEL--------------------------------HLSHN 73

Query: 640 QLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAK 699
           Q+S ++ S L  L  L+ L+++ N+L+         L     L L +N L      +   
Sbjct: 74  QIS-DL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRD--TDSLIH 126

Query: 700 LQQLTSLYLSNNKLS 714
           L+ L  L + NNKL 
Sbjct: 127 LKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 46/273 (16%), Positives = 80/273 (29%), Gaps = 56/273 (20%)

Query: 442 ISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSEN 501
              +   +  +L   S + +  +    S V + +  ++         F   +  L LS N
Sbjct: 15  DPGLANAVKQNLGKQSVT-DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN 73

Query: 502 KFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSN 561
           + S      L +L+ L+ L ++ N L           + L  L L N  L    TD L +
Sbjct: 74  QISD--LSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSRLFLDNNEL--RDTDSLIH 126

Query: 562 LTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKR 621
           L +L+IL + NN L      S   L         L  L  +                   
Sbjct: 127 LKNLEILSIRNNKL-----KSIVMLGF-------LSKLEVL------------------- 155

Query: 622 GLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILET 681
                        DL  N+++      L  LK +  ++L+  +           L I  T
Sbjct: 156 -------------DLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200

Query: 682 LDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           +           P   +         +      
Sbjct: 201 VKDPDGRWIS--PYYISNGGSYVDGCVLWELPV 231

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 73.2 bits (180), Expect = 9e-15
 Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIE 172
            L L+ N          F  L +L  ++  +N +   I    F     +  + L++N +E
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94

Query: 173 GKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQ- 229
             +  ++  GL++LK L+L  N I   +  +    L+++  LSL  N+ +  +       
Sbjct: 95  N-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDT 151

Query: 230 LRKLETLDLQRN 241
           L  L TL+L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 606 PVEIQDLIVNWKNSKRGLSS----KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS 661
           P    +L +N  N    L +    K L     ++ SNN+++     +     G+  + L+
Sbjct: 31  PQYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89

Query: 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
            N+L+      F  LE L+TL L  N ++     +F  L  +  L L +N+++  +  
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 32/174 (18%), Positives = 52/174 (29%), Gaps = 43/174 (24%)

Query: 539 SSLQVLNLRNTALEG-SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILP 597
                L L N        T     L  L+ ++ SNN +   I                  
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIE----------------- 73

Query: 598 TLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKS 657
                F     + ++                       L++N+L          L+ LK+
Sbjct: 74  --EGAFEGASGVNEI----------------------LLTSNRLENVQHKMFKGLESLKT 109

Query: 658 LNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
           L L  N++      +F  L  +  L L  N ++   P  F  L  L++L L  N
Sbjct: 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSLSGEIPEDI-GTLAN 256
           IP  I       +L L  N+F+      + + L +L  ++   N ++ +I E      + 
Sbjct: 26  IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82

Query: 257 ITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNK 314
           +  + L++N L   +   + + +  L TL L SN ++  +    F  L  ++ L L  N+
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140

Query: 315 LK 316
           + 
Sbjct: 141 IT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 6/105 (5%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQN--LSNLSLLQHLDLHDNNLTGEF 531
           VD S+ + + ++P         L L+ N+F+  L        L  L+ ++  +N +T   
Sbjct: 16  VDCSNQKLN-KIPEHIPQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIE 73

Query: 532 PAFLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNL 575
                  S +  + L +  LE ++   +   L SL+ L L +N +
Sbjct: 74  EGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRI 117

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 6/129 (4%)

Query: 450 VLDLSNNSFSGEFP--AFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSG 505
            L L+NN F+       F     +  ++ S+N+ +     +F     +  + L+ N+   
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 506 QLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG-LSNLTS 564
              +    L  L+ L L  N +T         LSS+++L+L +  +  ++  G    L S
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHS 154

Query: 565 LQILDLSNN 573
           L  L+L  N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 422 TSVMVLMLSSNNFSGHVPKSI-SNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSN 479
                L L++N F+      I   + +L  ++ SNN  +     AF   S V  + ++SN
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 480 RFSGEVPSSF-GVTIL-MLSLSENKFSGQLPQNL-SNLSLLQHLDLHDNNLTGEFPAFLS 536
           R        F G+  L  L L  N+ +  +  +    LS ++ L L+DN +T   P    
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 537 QLSSLQVLNLRN 548
            L SL  LNL  
Sbjct: 151 TLHSLSTLNLLA 162

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 56/205 (27%), Positives = 89/205 (43%), Gaps = 15/205 (7%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA 170
           S+  +  + + ++      G   L  +T L L  N L   I   L NL+ L +L L  N 
Sbjct: 47  SIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENK 101

Query: 171 IEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
           ++  LSS +  LK LK L L+ N I   I   + +L  L  L L  NK +    LS  +L
Sbjct: 102 VK-DLSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITVLS--RL 155

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290
            KL+TL L+ N +S +I   +  L  +  L LS N ++    +++  +  L  L L S  
Sbjct: 156 TKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 211

Query: 291 LSGEISTWLFDLQGMKSLYLGGNKL 315
              +      +L    ++      L
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 34/206 (16%)

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILD 569
           +    +     +L   ++T       ++L+S+  +   N+ ++ S+  G+  L ++  L 
Sbjct: 19  SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLF 74

Query: 570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS-KSL 628
           L+ N L     +    L         L  L  +F    +++DL          L   K L
Sbjct: 75  LNGNKL-----TDIKPLAN-------LKNLGWLFLDENKVKDL--------SSLKDLKKL 114

Query: 629 AIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNS 688
                + L +N +S +I + L  L  L+SL L  N++     +    L  L+TL L  N 
Sbjct: 115 ---KSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQ 167

Query: 689 LSGKIPQTFAKLQQLTSLYLSNNKLS 714
           +S  I    A L +L +LYLS N +S
Sbjct: 168 IS-DIVP-LAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 59/277 (21%), Positives = 107/277 (38%), Gaps = 19/277 (6%)

Query: 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSG 245
            + I     I+              K +L++   +  +  +  +L  ++ +    + +  
Sbjct: 5   SETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK- 59

Query: 246 EIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGM 305
            + + I  L N+T L L+ N LT   P  + N+  L  L LD N +  ++S+ L DL+ +
Sbjct: 60  SV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS-LKDLKKL 114

Query: 306 KSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEG 365
           KSL L  N +   + +  +P+  L  L L +  +     L  S  T+L  L L +N++  
Sbjct: 115 KSLSLEHNGISDINGLVHLPQ--LESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISD 170

Query: 366 TYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSV 424
             P  L+ L  L  + LS N ++  L   L   +NL VL L       +           
Sbjct: 171 IVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 425 MVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE 461
             +  +  +       S    Y    +      F+ E
Sbjct: 227 NTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 8e-10
 Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 11/194 (5%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  +++L  L L  N ++     +   +L +L  L L+ N ++  I   L +L  LE
Sbjct: 83  IKPLANLKNLGWLFLDENKVKD---LSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLE 137

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L L  N I   ++  ++ L  L  L L+DN I   +P  +  LT L  L L +N  S  
Sbjct: 138 SLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
             L+   L+ L+ L+L       +       L     +  ++ +L      S     +  
Sbjct: 194 RALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 251

Query: 283 TLRLDSNVLSGEIS 296
            ++      + E+S
Sbjct: 252 NVKWHLPEFTNEVS 265

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 51/293 (17%), Positives = 93/293 (31%), Gaps = 57/293 (19%)

Query: 422 TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRF 481
              +   L   + +  V    + +  +  +  +N+            ++   + ++ N+ 
Sbjct: 24  AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVT-KLFLNGNKL 80

Query: 482 SGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSL 541
           +   P +    +  L L ENK       +L +L  L+ L L  N ++      L  L  L
Sbjct: 81  TDIKPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDING--LVHLPQL 136

Query: 542 QVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE 601
           + L L N  +  +    LS LT L  L L +N +     S    L G       L  L  
Sbjct: 137 ESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI-----SDIVPLAG-------LTKLQN 182

Query: 602 IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS 661
           +                                 LS N +S ++  +L  LK L  L L 
Sbjct: 183 L--------------------------------YLSKNHIS-DL-RALAGLKNLDVLELF 208

Query: 662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
             +      +   NL +  T+  +  SL    P+  +         +  +   
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 54/193 (27%)

Query: 522 LHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPS 581
                +   F       +     NL+  ++  ++T   + L S+  +  +N+++      
Sbjct: 9   TVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-----K 59

Query: 582 SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQL 641
           S   +Q +                   +  L                       L+ N+L
Sbjct: 60  SVQGIQYL-----------------PNVTKL----------------------FLNGNKL 80

Query: 642 SGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ 701
           + +I   L +LK L  L L  N+++ ++ S+  +L+ L++L L HN +S  I      L 
Sbjct: 81  T-DI-KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DIN-GLVHLP 134

Query: 702 QLTSLYLSNNKLS 714
           QL SLYL NNK++
Sbjct: 135 QLESLYLGNNKIT 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 48/178 (26%), Positives = 73/178 (41%), Gaps = 31/178 (17%)

Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK 174
           LDL    +   +    F  LT+LT+L+L  N L  ++ + +F+                 
Sbjct: 40  LDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFD----------------- 80

Query: 175 LSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLL-QLRK 232
                  L  L  L L +N +   +P  +  +LT L KL L  N+    +P  +  +L K
Sbjct: 81  ------DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTK 132

Query: 233 LETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289
           L+ L L  N L   IP      L N+  L+LS N L      +   + KL T+ L  N
Sbjct: 133 LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFS 220
           E LDL +  +     +   GL  L  L LD N +Q  + A +  +LT L  L L  N+ +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 221 GGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSI-RNM 278
                    L +L+ L L  N L   +P  +   L  +  L L+ N L  +IP      +
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 279 TKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
           T L TL L +N L   +    FD L  ++++ L GN
Sbjct: 155 TNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 51/218 (23%), Positives = 70/218 (32%), Gaps = 51/218 (23%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
           VD         VPS        L L     +         L+ L  L+L  N L      
Sbjct: 19  VDCQGKSLDS-VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77

Query: 534 FLSQLSSLQVLNLRN---TALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMI 590
               L+ L  L L N    +L   + D    LT L  L L   N L  +P          
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDH---LTQLDKLYL-GGNQLKSLP---------- 123

Query: 591 DTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL- 649
                      +F    ++++L                       L+ NQL   IP+   
Sbjct: 124 ---------SGVFDRLTKLKEL----------------------RLNTNQLQ-SIPAGAF 151

Query: 650 GSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHN 687
             L  L++L+LS NQLQ      F  L  L+T+ L  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 30/79 (37%), Positives = 39/79 (49%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
           DL +  L+    ++   L  L  LNL YNQLQ      F +L  L TL L++N L+    
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 695 QTFAKLQQLTSLYLSNNKL 713
             F  L QL  LYL  N+L
Sbjct: 101 GVFDHLTQLDKLYLGGNQL 119

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 5/117 (4%)

Query: 606 PVEIQDLIVNWKNSKRGLSSK---SLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSY 662
           P + + L +        LS      L   + ++L  NQL          L  L +L L+ 
Sbjct: 34  PADTEKLDLQ-STGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92

Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
           NQL       F +L  L+ L L  N L       F +L +L  L L+ N+L   IP 
Sbjct: 93  NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPA 148

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 43/163 (26%), Positives = 59/163 (36%), Gaps = 29/163 (17%)

Query: 563 TSLQILDLSNNNLLGKIPSSF---GNLQGMIDTPSILPTLPE-IFSFPVEIQDLIVNWKN 618
              + LDL +  L     ++F     L  +    + L TL   +F    E+  L      
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL------ 88

Query: 619 SKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEI 678
                            L+NNQL+         L  L  L L  NQL+      F  L  
Sbjct: 89  ----------------GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 679 LETLDLSHNSLSGKIPQ-TFAKLQQLTSLYLSNNKLSGRIPES 720
           L+ L L+ N L   IP   F KL  L +L LS N+L   +P  
Sbjct: 133 LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHG 173

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 8/121 (6%)

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANI 257
           +P+ I    +  KL L+    +     +   L KL  L+L  N L   +   +   L  +
Sbjct: 29  VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTEL 85

Query: 258 TILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNKL 315
             L L+NN L  ++P  +  ++T+L  L L  N L   + + +FD L  +K L L  N+L
Sbjct: 86  GTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL 143

Query: 316 K 316
           +
Sbjct: 144 Q 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 50/205 (24%), Positives = 75/205 (36%), Gaps = 55/205 (26%)

Query: 234 ETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLS 292
           E LDLQ   L+         L  +T L L  N L   +   +  ++T+L TL L +N L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 293 GEISTWLFD-LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ- 350
             +   +FD L  +  LYLGGN+LK                         S+P  +  + 
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-------------------------SLPSGVFDRL 130

Query: 351 TELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNN 409
           T+L  L L+ N+L+                        S+P   F+   NL  L LS N 
Sbjct: 131 TKLKELRLNTNQLQ------------------------SIPAGAFDKLTNLQTLSLSTNQ 166

Query: 410 FSGELPETIGQSTSVMVLMLSSNNF 434
                     +   +  + L  N F
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 451 LDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFG--VTILMLSLSENKFSGQL 507
           LDL +   +      F   + +  +++  N+        F     +  L L+ N+ +  L
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SL 98

Query: 508 PQNL-SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGL-SNLTSL 565
           P  +  +L+ L  L L  N L         +L+ L+ L L    L+ SI  G    LT+L
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNL 157

Query: 566 QILDLSNNNLLGKIPSSFGNL 586
           Q L LS N L      +F  L
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRL 178

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 17/162 (10%)

Query: 422 TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLV--GHVDISSN 479
                L L S   +     +   + +L  L+L  N       A   D L   G + +++N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANN 93

Query: 480 RFSGEVPSSFG--VTILMLSLSENKFSGQLPQNL-SNLSLLQHLDLHDNNLT----GEFP 532
           + +      F     +  L L  N+    LP  +   L+ L+ L L+ N L     G F 
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAF- 151

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDG-LSNLTSLQILDLSNN 573
               +L++LQ L+L    L+ S+  G    L  LQ + L  N
Sbjct: 152 ---DKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
            L  NQ +  +P  L + K L  ++LS N++      +F N+  L TL LS+N L    P
Sbjct: 37  YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95

Query: 695 QTFAKLQQLTSLYLSNNKLSGRIPE 719
           +TF  L+ L  L L  N +S  +PE
Sbjct: 96  RTFDGLKSLRLLSLHGNDIS-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 627 SLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSH 686
           +    +L+DLSNN++S     S  ++  L +L LSYN+L+   P TF  L+ L  L L  
Sbjct: 52  NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111

Query: 687 NSLSGKIPQ-TFAKLQQLTSLYLSNN 711
           N +S  +P+  F  L  L+ L +  N
Sbjct: 112 NDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 656 KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
             L L  NQ    +P    N + L  +DLS+N +S    Q+F+ + QL +L LS N+L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 27/144 (18%)

Query: 64  SDC-CRWEMVRCRSRG----PS---QEVTGLDLN-NLFPLDSIVTSVVLAPIFRIRSLMT 114
           ++C C   +VRC ++G    P    ++VT L L+ N F L     S         + L  
Sbjct: 6   TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELS-------NYKHLTL 58

Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEG 173
           +DLS N +      + F+N+T+L  L L  N L   IP + F+ L+ L  L L  N    
Sbjct: 59  IDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGN---- 112

Query: 174 KLSSRVAG----LKNLKQLILDDN 193
            +S    G    L  L  L +  N
Sbjct: 113 DISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDDNLIQ 196
           T L L  N     +P +L N ++L  +DLS N I   LS++  + +  L  LIL  N ++
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 197 GQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLL-QLRKLETLDLQRN 241
             IP      L +L  LSL  N  S  +P      L  L  L +  N
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 4/103 (3%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
           V  S+      +P      +  L L  N+F+  +P+ LSN   L  +DL +N ++     
Sbjct: 15  VRCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQ 72

Query: 534 FLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNL 575
             S ++ L  L L    L   I       L SL++L L  N++
Sbjct: 73  SFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSG 245
            +L LD N     +P E+ N  +L  + L  N+ S     S   + +L TL L  N L  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 246 EIPEDI-GTLANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSN 289
            IP      L ++ +L+L  N ++  +P+    +++ L  L + +N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 9/96 (9%)

Query: 222 GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKL 281
           GIP  +        L L  N  +  +P+++    ++T++ LSNN ++    QS  NMT+L
Sbjct: 28  GIPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 282 VTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNKLK 316
           +TL L  N L   I    FD L+ ++ L L GN + 
Sbjct: 81  LTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 24/125 (19%)

Query: 450 VLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQ 509
            L L  N F+       +   +  +D+S+NR S              +LS   FS     
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS--------------TLSNQSFS----- 75

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQIL 568
              N++ L  L L  N L    P     L SL++L+L    +   + +G  ++L++L  L
Sbjct: 76  ---NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHL 131

Query: 569 DLSNN 573
            +  N
Sbjct: 132 AIGAN 136

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 66.7 bits (162), Expect = 7e-12
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 2/103 (1%)

Query: 638 NNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLSGKIPQT 696
               + +    L   + L  L +   Q   ++       L  L  L +  + L    P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 697 FAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLC 739
           F    +L+ L LS N L   +         +  ++ + N   C
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 13/122 (10%)

Query: 73  RCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFA 132
            C   G S  +       L  L  +  +          +L  L +        +      
Sbjct: 4   ACCPHGSS-GLRCTRDGALDSLHHLPGA---------ENLTELYIENQQHLQHLELRDLR 53

Query: 133 NLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILD 191
            L  L  L +  + L   +    F     L  L+LS NA+E  LS +     +L++L+L 
Sbjct: 54  GLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLS 111

Query: 192 DN 193
            N
Sbjct: 112 GN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 3/81 (3%)

Query: 508 PQNLSNLSLLQHLDLHDNNLTGEFPAF-LSQLSSLQVLNLRNTALEGSITDG-LSNLTSL 565
             +L     L  L + +           L  L  L+ L +  + L   +          L
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRL 82

Query: 566 QILDLSNNNLLGKIPSSFGNL 586
             L+LS N L      +   L
Sbjct: 83  SRLNLSFNALESLSWKTVQGL 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSLSGEIPEDIGT-LAN 256
               +    NL +L +   +    + L  L+ L +L  L + ++ L   +  D       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289
           ++ L LS NAL  ++         L  L L  N
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 8e-07
 Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 26/116 (22%)

Query: 129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL 188
                   LT L +++      +  +                          GL  L+ L
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDL-----------------------RGLGELRNL 61

Query: 189 ILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL 243
            +  + ++  +  +       L +L+L  N     +    +Q   L+ L L  N L
Sbjct: 62  TIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 5e-06
 Identities = 25/137 (18%), Positives = 34/137 (24%), Gaps = 44/137 (32%)

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPS-SFGNLQGMIDTPSILPTLPEIFSFPVEIQDL 612
                L    +L  L + N   L  +       L         L  L             
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGL-------GELRNL------------- 61

Query: 613 IVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPST 672
                                  +  + L    P +      L  LNLS+N L+     T
Sbjct: 62  ----------------------TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99

Query: 673 FGNLEILETLDLSHNSL 689
              L  L+ L LS N L
Sbjct: 100 VQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIP-EDIGTLANITILALSNNALTGAIPQSIRNMTKL 281
               L     L  L ++       +   D+  L  +  L +  + L    P +     +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 282 VTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKL 315
             L L  N L   +S        ++ L L GN L
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 25/125 (20%)

Query: 264 NNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLYLGGNKLKWNDNVS 322
                      +     L  L +++      +       L  +++L +  + L       
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL------R 69

Query: 323 IVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILS 382
            V                            L+ L+LS N LE    + +  L+L  ++LS
Sbjct: 70  FVAPDAFHFT------------------PRLSRLNLSFNALESLSWKTVQGLSLQELVLS 111

Query: 383 DNMLT 387
            N L 
Sbjct: 112 GNPLH 116

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 53/242 (21%), Positives = 93/242 (38%), Gaps = 54/242 (22%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
            ++     + +  +   +  +   ++ N     +   +  L  +++L L  N L  +  A
Sbjct: 24  ANLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISA 80

Query: 534 FLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDT 592
              +L++L  L L    L+ S+ +G+   LT+L+ L L  N L                 
Sbjct: 81  L-KELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL----------------- 121

Query: 593 PSILPTLPE-IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGS 651
                +LP+ +F     +  L                      +L++NQL          
Sbjct: 122 ----QSLPDGVFDKLTNLTYL----------------------NLAHNQLQSLPKGVFDK 155

Query: 652 LKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLSGKIPQ-TFAKLQQLTSLYLS 709
           L  L  L+LSYNQLQ ++P   F  L  L+ L L  N L   +P   F +L  L  ++L 
Sbjct: 156 LTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLH 213

Query: 710 NN 711
           +N
Sbjct: 214 DN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 31/233 (13%)

Query: 70  EMVRCRSRG----PSQ---EVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSM 122
           E +   +      P     E    +L         VT         + S+  +  + + +
Sbjct: 1   ETITVSTPIKQIFPDDAFAETIKANLKK-----KSVTDA--VTQNELNSIDQIIANNSDI 53

Query: 123 QGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRV-A 180
           +      G   L  + YL L  N L+  I +     L  L +L L+ N ++  L + V  
Sbjct: 54  KSV---QGIQYLPNVRYLALGGNKLH-DISA--LKELTNLTYLILTGNQLQ-SLPNGVFD 106

Query: 181 GLKNLKQLILDDNLIQGQIPAEIGN-LTNLHKLSLRQNKFSGGIPLSLL-QLRKLETLDL 238
            L NLK+L+L +N +Q  +P  + + LTNL  L+L  N+    +P  +  +L  L  LDL
Sbjct: 107 KLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDL 164

Query: 239 QRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSN 289
             N L   +PE +   L  +  L L  N L  ++P  +   +T L  + L  N
Sbjct: 165 SYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 54/248 (21%), Positives = 88/248 (35%), Gaps = 54/248 (21%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
           + +S+       P       +  +L +   +  + QN   L+ +  +  +++++      
Sbjct: 3   ITVSTPIKQI-FPDDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV-QG 58

Query: 534 FLSQLSSLQVLNLRNTALEG-SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDT 592
               L +++ L L    L   S    L+NLT L +      N L  +P            
Sbjct: 59  I-QYLPNVRYLALGGNKLHDISALKELTNLTYLIL----TGNQLQSLP------------ 101

Query: 593 PSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSL 652
                    +F     +++L                       L  NQL          L
Sbjct: 102 -------NGVFDKLTNLKEL----------------------VLVENQLQSLPDGVFDKL 132

Query: 653 KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQ-TFAKLQQLTSLYLSNN 711
             L  LNL++NQLQ      F  L  L  LDLS+N L   +P+  F KL QL  L L  N
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191

Query: 712 KLSGRIPE 719
           +L   +P+
Sbjct: 192 QLK-SVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 150 SIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNL 209
             P   F        +L        ++  V   +      +  N    +    I  L N+
Sbjct: 12  IFPDDAFA--ETIKANLKKK----SVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV 65

Query: 210 HKLSLRQNKFSGGIPLSLL----QLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSN 264
             L+L  NK      L  +    +L  L  L L  N L   +P  +   L N+  L L  
Sbjct: 66  RYLALGGNK------LHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118

Query: 265 NALTGAIPQSIRN-MTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNKLK 316
           N L  ++P  + + +T L  L L  N L   +   +FD L  +  L L  N+L+
Sbjct: 119 NQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 53/370 (14%), Positives = 108/370 (29%), Gaps = 87/370 (23%)

Query: 233 LETLDLQRNSLSGE----IPEDIGTLANITILALSNNALTG----AIPQSIRNMTKLVTL 284
           +E   L+ ++++ E    +   +    ++  + LS N +       + ++I +   L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 285 RLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSV--RGS 342
                             + ++ L      L             L  + L   +      
Sbjct: 66  EFSDIFTGRVKDE---IPEALRLL---LQALLKCPK--------LHTVRLSDNAFGPTAQ 111

Query: 343 IPL--WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNL 400
            PL  +LS  T L  L L  N L                 ++  +   ++      +  L
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLG----------PQAGAKIARALQELAVNKKAKNAPPL 161

Query: 401 SVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSG 460
             ++  RN            S         S+               L  + +  N    
Sbjct: 162 RSIICGRNRLENG-------SMKEWAKTFQSHR-------------LLHTVKMVQNGIRP 201

Query: 461 EFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQ----LPQNLSNLSL 516
           E    G + L+    ++  +            + +L L +N F+      L   L +   
Sbjct: 202 E----GIEHLLLEG-LAYCQ-----------ELKVLDLQDNTFTHLGSSALAIALKSWPN 245

Query: 517 LQHLDLHDNNLTGEFPAFLSQL------SSLQVLNLRNTALEG----SITDGL-SNLTSL 565
           L+ L L+D  L+    A +           LQ L L+   +E     ++   +   +  L
Sbjct: 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305

Query: 566 QILDLSNNNL 575
             L+L+ N  
Sbjct: 306 LFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 44/313 (14%), Positives = 85/313 (27%), Gaps = 58/313 (18%)

Query: 109 IRSLMTLDLSYNSMQGE---VPGTGFANLTRLTYLDLKDNNLNG----SIPSQLFNLRYL 161
             S+    L  +++  E              +  + L  N +       +   + + + L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 162 EFLDLSANAIEGKLSSRVAGLK----------NLKQLILDDNLIQGQIPAEIGNL----T 207
           E  + S              L+           L  + L DN         + +     T
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 208 NLHKLSLRQNKFS--GGIPLS-----------LLQLRKLETLDLQRNSLSGE----IPED 250
            L  L L  N      G  ++                 L ++   RN L         + 
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182

Query: 251 IGTLANITILALSNNALT-----GAIPQSIRNMTKLVTLRLDSNVLSGE----ISTWLFD 301
             +   +  + +  N +        + + +    +L  L L  N  +      ++  L  
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 302 LQGMKSLYLGGNKLKWN------DNVSIVPKCMLTELSLRSCSVRGSIPLWLST-----Q 350
              ++ L L    L         D  S +    L  L L+   +       L T      
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 351 TELTFLDLSENEL 363
            +L FL+L+ N  
Sbjct: 303 PDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 45/254 (17%), Positives = 81/254 (31%), Gaps = 60/254 (23%)

Query: 492 TILMLSLSENKFSGQ----LPQNLSNLSLLQHLDLHDN---NLTGEFPA-------FLSQ 537
           ++  + LS N    +    L +N+++   L+  +  D     +  E P         L +
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 538 LSSLQVLNLRNTALEG----SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTP 593
              L  + L + A        + D LS  T L+ L L NN L            G     
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL------------GPQAGA 140

Query: 594 SILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE----IPSSL 649
            I   L E+              K +K     +S+          N+L          + 
Sbjct: 141 KIARALQEL-----------AVNKKAKNAPPLRSI------ICGRNRLENGSMKEWAKTF 183

Query: 650 GSLKGLKSLNLSYNQL-----QGNIPSTFGNLEILETLDLSHNSLSGK----IPQTFAKL 700
            S + L ++ +  N +     +  +       + L+ LDL  N+ +      +       
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243

Query: 701 QQLTSLYLSNNKLS 714
             L  L L++  LS
Sbjct: 244 PNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 71/385 (18%), Positives = 117/385 (30%), Gaps = 110/385 (28%)

Query: 371 LSELNLGTVILSDNMLTG----SLPPPLFESRNLSVLVLSRNNFSGE----LPETIGQST 422
           ++  ++    L  + +T     S+   L E  ++  +VLS N    E    L E I    
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFS 482
            + +   S + F+G V   I    RLL+  L                L   V +S N F 
Sbjct: 61  DLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCP-----------KLH-TVRLSDNAFG 107

Query: 483 GEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE------------ 530
                      L+  LS++               L+HL LH+N L  +            
Sbjct: 108 PT-----AQEPLIDFLSKHTP-------------LEHLYLHNNGLGPQAGAKIARALQEL 149

Query: 531 -FPAFLSQLSSLQVLNLRNTALEG----SITDGLSNLTSLQILDLSNNNLLGKIPSSFGN 585
                      L+ +      LE            +   L  + +  N            
Sbjct: 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG----------- 198

Query: 586 LQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE- 644
               I    I   L E  ++  E++ L                      DL +N  +   
Sbjct: 199 ----IRPEGIEHLLLEGLAYCQELKVL----------------------DLQDNTFTHLG 232

Query: 645 ---IPSSLGSLKGLKSLNLSYNQLQ-------GNIPSTFGNLEILETLDLSHNSLSGKIP 694
              +  +L S   L+ L L+   L         +  S   N+  L+TL L +N +     
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAV 291

Query: 695 QTFA-----KLQQLTSLYLSNNKLS 714
           +T       K+  L  L L+ N+ S
Sbjct: 292 RTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 43/341 (12%), Positives = 91/341 (26%), Gaps = 104/341 (30%)

Query: 254 LANITI--LALSNNALTG----AIPQSIRNMTKLVTLRLDSNVLSGE----ISTWLFDLQ 303
           +A  +I   +L  +A+T     ++   +     +  + L  N +  E    +S  +   +
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 304 GMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENEL 363
            ++                 +P+ +              +   L    +L  + LS+N  
Sbjct: 61  DLEIAEFSDIFT--GRVKDEIPEAL------------RLLLQALLKCPKLHTVRLSDNAF 106

Query: 364 EGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS 423
             T  + L +                    L +   L  L L  N    +    I +   
Sbjct: 107 GPTAQEPLIDF-------------------LSKHTPLEHLYLHNNGLGPQAGAKIAR--- 144

Query: 424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSG 483
                L        V K   N   L  +    N                           
Sbjct: 145 ----ALQEL----AVNKKAKNAPPLRSIICGRNRLENG---------------------- 174

Query: 484 EVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE-----FPAFLSQL 538
                  +     +   ++              L  + +  N +  E         L+  
Sbjct: 175 ------SMKEWAKTFQSHRL-------------LHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 539 SSLQVLNLRNTAL--EG--SITDGLSNLTSLQILDLSNNNL 575
             L+VL+L++      G  ++   L +  +L+ L L++  L
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 9e-11
 Identities = 90/561 (16%), Positives = 164/561 (29%), Gaps = 167/561 (29%)

Query: 234 ETLDLQRNSLSGEIPEDI--------GTLANITILALSNNALTGAIPQSIRNMTKLVTLR 285
           +  D+ ++ LS E  + I        GTL     L      +     + +        LR
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--------LR 88

Query: 286 LDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVP-----KCMLTEL--SLRSCS 338
           ++   L   I T       M  +Y+      +NDN               +L  +L    
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 339 VRGSIPL---------WLSTQTELTFLDLSENELEGTYPQ---WLSELNLGTVILSDNML 386
              ++ +         W++             +++        WL   NL      + +L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDV------CLSYKVQCKMDFKIFWL---NLKNCNSPETVL 199

Query: 387 TGSLPPPLFESRNLSVLV----LSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSI 442
                  L   + L   +     SR++ S  +   I    + +  +L S  +        
Sbjct: 200 E-----ML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENC- 246

Query: 443 SNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNR----FSGEVPSSFGVTILMLSL 498
                LLVL                       ++ + +    F      +    IL+ + 
Sbjct: 247 -----LLVLL----------------------NVQNAKAWNAF------NLSCKILLTTR 273

Query: 499 SENKFSGQLPQNLSNLSLLQHLDLHDNNLT-GEFPAFLSQLSSLQVLNLRNTALEGS--- 554
            +           +++S    LD H   LT  E  + L +    +  +L    L  +   
Sbjct: 274 FKQVTDFLSAATTTHIS----LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 555 -------ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFS-FP 606
                  I DGL+  T      ++ + L   I SS   L+     P+    + +  S FP
Sbjct: 330 LSIIAESIRDGLA--TWDNWKHVNCDKLTTIIESSLNVLE-----PAEYRKMFDRLSVFP 382

Query: 607 --VEI--QDLIVNWKNSKR--------GLSSKSLA-------IYSLMDLSNNQLSGEIPS 647
               I    L + W +  +         L   SL          S+  +    L  E+  
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI---YL--ELKV 437

Query: 648 SLGSLKGL-KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFA-------- 698
            L +   L +S+   Y     NIP TF      ++ DL    L                 
Sbjct: 438 KLENEYALHRSIVDHY-----NIPKTF------DSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 699 --KLQQLTSLYLSNNKLSGRI 717
             ++     ++L    L  +I
Sbjct: 487 PERMTLFRMVFLDFRFLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 6e-07
 Identities = 64/428 (14%), Positives = 124/428 (28%), Gaps = 133/428 (31%)

Query: 17  ILNSTCLCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLET---WNSSSDCCRWEMVR 73
           I+ S      +     L  F +L+     +      +   L     +           ++
Sbjct: 54  IIMS-----KDAVSGTLRLFWTLL--SKQEEMVQKFVEEVLRINYKF-------LMSPIK 99

Query: 74  CRSRGPSQEVTGLD--LNNLFPLDSIVT--SVV-LAPIFRIRS-LMTL-DLSYNSMQGEV 126
              R PS          + L+  + +    +V  L P  ++R  L+ L       + G V
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-V 158

Query: 127 PGTGFANLTRLTYLDLK-----DNN---LN-------GSIPSQLFNLRYL---------- 161
            G+G   +     L  K     D     LN        ++   L  L Y           
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 162 --EFLDLSANAIEGKLSSRVAGLKNLKQ--LILDD----NLIQG-----QI-----PAEI 203
               + L  ++I+ +L  R+   K  +   L+L +              +I       ++
Sbjct: 219 HSSNIKLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 204 GN-LTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS---GEIPE---DIGTLAN 256
            + L+      +  +  S         L   E   L    L     ++P           
Sbjct: 278 TDFLSAATTTHISLDHHSMT-------LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR- 329

Query: 257 ITILA---------------LSNNALTGAIPQSIRNMT---------KLVTLRLDSNVLS 292
           ++I+A               ++ + LT  I  S+  +          +L      ++   
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH--- 386

Query: 293 GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG------SIP-L 345
             I T L       SL        W D +      ++ +L   S   +       SIP +
Sbjct: 387 --IPTILL------SLI-------WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 346 WLSTQTEL 353
           +L  + +L
Sbjct: 432 YLELKVKL 439

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 7e-04
 Identities = 50/290 (17%), Positives = 91/290 (31%), Gaps = 104/290 (35%)

Query: 26  PEDQKAALLEFKSLVLGDL---ADNSS--ADAMLG-----GLETWNSSSDCCRWEMVRCR 75
           P++ K+ LL++      DL      ++    +++      GL TW+       W+ V C 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD------NWKHVNCD 353

Query: 76  SRGPSQEVTGLDLNNL--------------FPLDSIVTSVVLAPI--------------- 106
                  +    LN L              FP  + + +++L+ I               
Sbjct: 354 KL---TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 107 FRIRSLMTLD-----LSYNSMQGEVPGTGFANLTRL------TYLDLKDNNLNGSIPSQL 155
               SL+        +S  S+  E+      N   L       Y   K  + +  IP  L
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVK-LENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 156 FN---------LRYLE-----------FLDLSANAIEGKLSSRVAG-------------- 181
                      L+ +E           FLD     +E K+  R                 
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKI--RHDSTAWNASGSILNTLQ 525

Query: 182 -LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL 230
            LK  K  I D++    ++   I +     + +L  +K++      LL++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT-----DLLRI 570

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEG 173
           L L  N +  ++    F +L  L  L L  N L  ++P  +F+ L  L  LDL  N +  
Sbjct: 45  LYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 174 KLSSRV-AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRK 232
            L S V   L +LK+L +  N +   +P  I  LT+L  L+L QN+       +  +L  
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 233 LETLDLQRN 241
           L    L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
            L +NQ++   P    SL  LK L L  NQL       F +L  L  LDL  N L+    
Sbjct: 46  YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS 105

Query: 695 QTFAKLQQLTSLYLSNNKLSGRIPE 719
             F +L  L  L++  NKL+  +P 
Sbjct: 106 AVFDRLVHLKELFMCCNKLT-ELPR 129

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 38/171 (22%), Positives = 54/171 (31%), Gaps = 45/171 (26%)

Query: 542 QVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE 601
           Q+L L +  +         +L +L+ L L +N L                       LP 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL---------------------GALPV 81

Query: 602 -IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNL 660
            +F    ++  L                      DL  NQL+    +    L  LK L +
Sbjct: 82  GVFDSLTQLTVL----------------------DLGTNQLTVLPSAVFDRLVHLKELFM 119

Query: 661 SYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
             N+L   +P     L  L  L L  N L       F +L  LT  YL  N
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFS 220
           + L L  N I          L NLK+L L  N +   +P  +  +LT L  L L  N+  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQ-- 99

Query: 221 GGIPLSLL------QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQS 274
               L++L      +L  L+ L +  N L+ E+P  I  L ++T LAL  N L      +
Sbjct: 100 ----LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154

Query: 275 IRNMTKLVTLRLDSN 289
              ++ L    L  N
Sbjct: 155 FDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 11/133 (8%)

Query: 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS---GGIPLSLLQLRKLETLDLQRNS 242
           + L L DN I    P    +L NL +L L  N+      G+      L +L  LDL  N 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF---DSLTQLTVLDLGTNQ 99

Query: 243 LSGEIPEDI-GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD 301
           L+  +P  +   L ++  L +  N LT  +P+ I  +T L  L LD N L   I    FD
Sbjct: 100 LT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFD 156

Query: 302 -LQGMKSLYLGGN 313
            L  +   YL GN
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 35/117 (29%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 606 PVEIQDLIVNWKNSKRGLSSK---SLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSY 662
           P   Q L ++  N    L      SL     + L +NQL         SL  L  L+L  
Sbjct: 39  PTNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
           NQL     + F  L  L+ L +  N L+ ++P+   +L  LT L L  N+L   IP 
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAG----LKNLKQLIL 190
           T    L L DN +    P    +L  L+ L L +N    +L +   G    L  L  L L
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN----QLGALPVGVFDSLTQLTVLDL 95

Query: 191 DDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPE 249
             N +   +P+ +   L +L +L +  NK +  +P  + +L  L  L L +N L      
Sbjct: 96  GTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153

Query: 250 DIGTLANITILALSNN 265
               L+++T   L  N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 8/116 (6%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
           VD  S R +  VP+       +L L +N+ +   P    +L  L+ L L  N L      
Sbjct: 24  VDCRSKRHAS-VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 534 FLSQLSSLQVLNLRN---TALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNL 586
               L+ L VL+L     T L  ++ D    L  L+ L +  N  L ++P     L
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFD---RLVHLKELFMCCNK-LTELPRGIERL 134

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANI 257
           +PA I   TN   L L  N+ +   P     L  L+ L L  N L   +P  +  +L  +
Sbjct: 34  VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 258 TILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           T+L L  N LT  +P ++   +  L  L +  N L+ E+   +  L  +  L L  N+LK
Sbjct: 91  TVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 2/86 (2%)

Query: 635 DLSNNQLSGEIPSSL-GSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI 693
            L++N+L       L G L  L  L L  NQL G  P+ F     ++ L L  N +    
Sbjct: 35  LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94

Query: 694 PQTFAKLQQLTSLYLSNNKLSGRIPE 719
            + F  L QL +L L +N++S  +  
Sbjct: 95  NKMFLGLHQLKTLNLYDNQIS-CVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 626 KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDL 684
             L     ++L  NQL+G  P++      ++ L L  N+++  I +  F  L  L+TL+L
Sbjct: 51  GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNL 109

Query: 685 SHNSLSGKIPQ-TFAKLQQLTSLYLSNN 711
             N +S  +   +F  L  LTSL L++N
Sbjct: 110 YDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEG 173
           L L+ N +        F  L  L  L+LK N L   I    F    +++ L L  N    
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGEN---- 88

Query: 174 KLSSRVAG----LKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQN 217
           K+          L  LK L L DN I   +      +L +L  L+L  N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 656 KSLNLSYNQLQGNIPST--FGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
             L L+ N+L   I S   FG L  L  L+L  N L+G  P  F     +  L L  NK+
Sbjct: 32  TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 714 S 714
            
Sbjct: 91  K 91

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNL-SNLSLLQHLDLHDNNLTGEFP 532
           VD +      E+P    +    L L++N+        L   L  L  L+L  N LTG  P
Sbjct: 13  VDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNLLGKIPSSFGNLQ 587
                 S +Q L L    ++  I++ +   L  L+ L+L +N +   +P SF +L 
Sbjct: 72  NAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLL-QLRKLETLDLQRNSLSGEIPEDI-GTLAN 256
           IP +I    +  +L L  N+        L  +L  L  L+L+RN L+  I  +     ++
Sbjct: 23  IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79

Query: 257 ITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGN 313
           I  L L  N +   I   +   + +L TL L  N +S  +    F+ L  + SL L  N
Sbjct: 80  IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 7/106 (6%)

Query: 164 LDLSANAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSG 221
           L L+ N +    S  +   L +L +L L  N + G I        +++ +L L +NK   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIK- 91

Query: 222 GIPLSLL-QLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNN 265
            I   +   L +L+TL+L  N +S  +       L ++T L L++N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL 188
             + N  R   LDL        I +    L   + +D S N I  KL      L+ LK L
Sbjct: 13  AQYTNAVRDRELDL-RGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTL 69

Query: 189 ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRN 241
           ++++N I          L +L +L L  N     G    L  L+ L  L + RN
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPE 249
           L   LI+ Q   +  N     +L LR  K      L    L + + +D   N +  ++ +
Sbjct: 4   LTAELIE-QAA-QYTNAVRDRELDLRGYKIPVIENLGAT-LDQFDAIDFSDNEIR-KL-D 58

Query: 250 DIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS--GEISTWLFDLQGMKS 307
               L  +  L ++NN +        + +  L  L L +N L   G++   L  L+ +  
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTY 117

Query: 308 LYLGGN 313
           L +  N
Sbjct: 118 LCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI 199
           + L    +  +  +Q  N      LDL    I   + +  A L     +   DN I+   
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--- 55

Query: 200 PAEIGN---LTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS--GEIPEDIGTL 254
             ++     L  L  L +  N+           L  L  L L  NSL   G++ + + +L
Sbjct: 56  --KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASL 112

Query: 255 ANITILALSNNALT 268
            ++T L +  N +T
Sbjct: 113 KSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
           DL   ++   I +   +L    +++ S N+++  +   F  L  L+TL +++N +     
Sbjct: 25  DLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGE 81

Query: 695 QTFAKLQQLTSLYLSNNKLS 714
                L  LT L L+NN L 
Sbjct: 82  GLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG-KI 693
           D S+N++  ++      L+ LK+L ++ N++          L  L  L L++NSL     
Sbjct: 48  DFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105

Query: 694 PQTFAKLQQLTSLYLSNN 711
               A L+ LT L +  N
Sbjct: 106 LDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG-S 554
           +  S+N+   +L      L  L+ L +++N +          L  L  L L N +L    
Sbjct: 47  IDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 555 ITDGLSNLTSLQILDLSNN 573
             D L++L SL  L +  N
Sbjct: 105 DLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS 554
           M+ L+      +     +N    + LDL    +        + L     ++  +  +   
Sbjct: 1   MVKLTAELI--EQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-K 56

Query: 555 ITDGLSNLTSLQILDLSNNNL 575
           + DG   L  L+ L ++NN +
Sbjct: 57  L-DGFPLLRRLKTLLVNNNRI 76

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
                +D S N ++      GF  L RL  L + +N +          L  L  L L+ N
Sbjct: 42  DQFDAIDFSDNEIR---KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 170 AIEGKLS--SRVAGLKNLKQLILDDN 193
           ++  +L     +A LK+L  L +  N
Sbjct: 99  SLV-ELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 634 MDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI 693
           + L+   +  +      +    + L+L   ++   I +    L+  + +D S N +  K+
Sbjct: 2   VKLTAELIE-QAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 694 PQTFAKLQQLTSLYLSNNKLS 714
              F  L++L +L ++NN++ 
Sbjct: 58  -DGFPLLRRLKTLLVNNNRIC 77

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 634 MDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI 693
           +DL  N L          L  L  L L  N+LQ      F  L  L  L+LS N L    
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 694 PQTFAKLQQLTSLYLSNNKLSGRIPE 719
              F KL QL  L L+ N+L   +P+
Sbjct: 93  NGVFDKLTQLKELALNTNQLQ-SLPD 117

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 9/131 (6%)

Query: 115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSANAIEG 173
           LDL  NS++  +P   F  LT LT L L  N L  S+P+ +FN L  L +L+LS N ++ 
Sbjct: 33  LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 174 KLSSRV-AGLKNLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSGGIPLSLL-QL 230
            L + V   L  LK+L L+ N +Q  +P  +   LT L  L L QN+    +P  +  +L
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRL 147

Query: 231 RKLETLDLQRN 241
             L+ + L  N
Sbjct: 148 TSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 36/117 (30%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 606 PVEIQDLIVNWKNSKRGLSSK---SLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSY 662
           P +   L +   NS + L +     L   + + L  N+L          L  L  LNLS 
Sbjct: 27  PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE 719
           NQLQ      F  L  L+ L L+ N L       F KL QL  L L  N+L   +P+
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 43/176 (24%), Positives = 61/176 (34%), Gaps = 48/176 (27%)

Query: 539 SSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPT 598
           +    L+L   +L+         LTSL  L L  N L                      +
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL---------------------QS 66

Query: 599 LPE-IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKS 657
           LP  +F+    +  L                      +LS NQL          L  LK 
Sbjct: 67  LPNGVFNKLTSLTYL----------------------NLSTNQLQSLPNGVFDKLTQLKE 104

Query: 658 LNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLSGKIPQ-TFAKLQQLTSLYLSNN 711
           L L+ NQLQ ++P   F  L  L+ L L  N L   +P   F +L  L  ++L +N
Sbjct: 105 LALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGN-LTNLHKLSLRQNKFS 220
            +LDL  N+++   +     L +L QL L  N +Q  +P  + N LT+L  L+L  N+  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 221 GGIPLSLL-QLRKLETLDLQRNSLSGEIPEDI-GTLANITILALSNNALTGAIPQSI-RN 277
             +P  +  +L +L+ L L  N L   +P+ +   L  +  L L  N L  ++P  +   
Sbjct: 90  -SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR 146

Query: 278 MTKLVTLRLDSN 289
           +T L  + L  N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
           V+  S   +  VP+        L L  N            L+ L  L L  N L      
Sbjct: 12  VECYSQGRTS-VPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 534 FLSQLSSLQVLNLRN---TALEGSITDGLSNLTSLQILDLSNNNL 575
             ++L+SL  LNL      +L   + D    LT L+ L L+ N L
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFD---KLTQLKELALNTNQL 112

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 199 IPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI-GTLANI 257
           +P  I        L L  N           +L  L  L L  N L   +P  +   L ++
Sbjct: 22  VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 258 TILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLFD-LQGMKSLYLGGNKL 315
           T L LS N L  ++P  +   +T+L  L L++N L   +   +FD L  +K L L  N+L
Sbjct: 79  TYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

Query: 316 K 316
           K
Sbjct: 137 K 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDDN 193
            + TYLDL+ N+L          L  L  L L  N ++  L + V   L +L  L L  N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86

Query: 194 LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL-QLRKLETLDLQRNSLSGEIPEDI- 251
            +Q         LT L +L+L  N+    +P  +  +L +L+ L L +N L   +P+ + 
Sbjct: 87  QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVF 144

Query: 252 GTLANITILALSNN 265
             L ++  + L +N
Sbjct: 145 DRLTSLQYIWLHDN 158

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 48/279 (17%), Positives = 92/279 (32%), Gaps = 50/279 (17%)

Query: 347 LSTQTELTFLDLSENELEGTYPQWLSEL------NLGTVILSDNMLTGSLPPPLFE---- 396
            S    +T LDLS N L       L +       ++ ++ LS N L       L +    
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 397 -SRNLSVLVLSRNNFSGELPETIGQ-----STSVMVLMLSSNNFSGHVPKSISNIYR--- 447
              N++ L LS N  S +  + + +       ++ VL L  N+FS          +    
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 448 --LLVLDLSNNSFSGEFPAFGSDSLVG------HVDISSNRFS-------GEVPSSFGVT 492
             +  L+L  N    +        L         +++  N  +        +  +S   +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 493 ILMLSLSENKFSGQLPQNLS-----NLSLLQHLDLHDNNLTGE----FPAFLSQLSSLQV 543
           +  L LS N    +    L+       + +  L+L  N L G            L  LQ 
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 544 LNLRNTALEG-------SITDGLSNLTSLQILDLSNNNL 575
           + L    ++        ++     N+  + ++D +   +
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 53/293 (18%), Positives = 100/293 (34%), Gaps = 57/293 (19%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFA-----NLTRLTYLDLKDNNLNGSIPSQLF-----NLR 159
             + +LDLS N++   +               +T L+L  N+L      +L         
Sbjct: 22  HGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 160 YLEFLDLSANAIEGK-LSSRVAGLKN----LKQLILDDNLIQGQIPAEIGNL-----TNL 209
            +  L+LS N +  K     V  L      +  L L  N    +  +E          ++
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140

Query: 210 HKLSLRQNKFS--GGIPLS---LLQLRKLETLDLQRNSLSGEIPEDIGTL-----ANITI 259
             L+LR N         L          + +L+L+ N+L+ +   ++        A++T 
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200

Query: 260 LALSNNALTGAIPQSI-----RNMTKLVTLRLDSNVLSGE----ISTWLFDLQGMKSLYL 310
           L LS N L       +          +V+L L  N L G     +      L+ ++++YL
Sbjct: 201 LDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 311 GGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENEL 363
             + +K               +S   C   G+         ++  +D +  E+
Sbjct: 261 DYDIVK--------------NMSKEQCKALGAA---FPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 65/340 (19%), Positives = 115/340 (33%), Gaps = 73/340 (21%)

Query: 416 ETIGQSTSVMVLMLSSNNFSGHVPKSI-----SNIYRLLVLDLSNNSFSGEFPAFGSDSL 470
           E       V  L LS NN        +     +    +  L+LS NS   +     SD L
Sbjct: 16  EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK----NSDEL 71

Query: 471 VGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNL-----SLLQHLDLHDN 525
                        ++ ++    +  L+LS N  S +    L          +  LDL  N
Sbjct: 72  ------------VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119

Query: 526 NLTGE-----FPAFLSQLSSLQVLNLRNTALEG----SITDGLSNL-TSLQILDLSNNNL 575
           + + +       AF +  +S+  LNLR   L       +   L+ +  ++  L+L  NNL
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 576 LGKIPSSFGNL---QGMIDTPSILPTLPEIFSFPVEIQDLIVNW------KNSKRGLSSK 626
                +S       + +   P+ + +L           DL  N              SS 
Sbjct: 180 -----ASKNCAELAKFLASIPASVTSL-----------DLSANLLGLKSYAELAYIFSSI 223

Query: 627 SLAIYSLMDLSNNQLSGE----IPSSLGSLKGLKSLNLSYNQLQG-------NIPSTFGN 675
              + SL +L  N L G     +     SLK L+++ L Y+ ++         + + F N
Sbjct: 224 PNHVVSL-NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 676 LEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715
           ++ +  +D +   +        + L +  S       L  
Sbjct: 283 IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLN 322

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 7e-06
 Identities = 59/368 (16%), Positives = 106/368 (28%), Gaps = 82/368 (22%)

Query: 256 NITILALSNNALTGAIPQSI-----RNMTKLVTLRLDSNVLSGEISTWLFDL-----QGM 305
            +T L LS N L       +          + +L L  N L  + S  L  +       +
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 306 KSLYLGGNKLKWNDNVSIV-----PKCMLTELSLRSCSVRGS-----IPLWLSTQTELTF 355
            SL L GN L +  +  +V         +T L L                + +    +T 
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 356 LDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELP 415
           L+L  N+L              +  L   +             N++ L L  NN + +  
Sbjct: 143 LNLRGNDLG----------IKSSDELIQILAA--------IPANVNSLNLRGNNLASKNC 184

Query: 416 ETIGQ-----STSVMVLMLSSNNFSGHVPKSIS-----NIYRLLVLDLSNNSFSGEFPAF 465
             + +       SV  L LS+N         ++         ++ L+L  N   G     
Sbjct: 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP---- 240

Query: 466 GSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQ-------LPQNLSNLSLLQ 518
             ++L    D                 +  + L  +            L     N+  + 
Sbjct: 241 SLENLKLLKDSLK-------------HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287

Query: 519 HLDLHDNNLTGEFPAFLSQL-----SSLQVLNLRNTAL-----EGSITDGLSNLTSLQIL 568
            +D +   +       +S L         V +L N  L       +  + L+    L+  
Sbjct: 288 LVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRES 347

Query: 569 DLSNNNLL 576
             +   LL
Sbjct: 348 IQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 57/348 (16%), Positives = 109/348 (31%), Gaps = 58/348 (16%)

Query: 227 LLQLRKLETLDLQRNSLSGEIPEDIG-----TLANITILALSNNALTGAIPQSI-----R 276
                 + +LDL  N+L      ++      T A++T L LS N+L       +      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 277 NMTKLVTLRLDSNVLSGE----ISTWLFDLQ-GMKSLYLGGNKLKWNDNVSIV-----PK 326
               + +L L  N LS +    +   L  +   +  L LG N      +           
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 327 CMLTELSLRSCSV--RGSIPL---WLSTQTELTFLDLSENELEGTYPQWLSEL------N 375
             +T L+LR   +  + S  L     +    +  L+L  N L       L++       +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 376 LGTVILSDNMLTGSLPPPLFE-----SRNLSVLVLSRNNFSGE----LPETIGQSTSVMV 426
           + ++ LS N+L       L         ++  L L  N   G     L         +  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 427 LMLSSNNFSG-------HVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSN 479
           + L  +            +  +  NI +++++D +            S+ +         
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLI------REL 311

Query: 480 RFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNL 527
               +VPS     +L   L   +      ++L+    L+        L
Sbjct: 312 SGKADVPS-----LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 49/266 (18%), Positives = 81/266 (30%), Gaps = 53/266 (19%)

Query: 132 ANLTRLTYLDLKDNNLNGSIPSQLF-----NLRYLEFLDLSANAIEGKLSSRVAGLKNLK 186
           +    +T LDL  NNL      +L          +  L+LS N++             L 
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL------GFKNSDELV 72

Query: 187 QLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS--GGIPLS---LLQLRKLETLDLQRN 241
           Q++                  N+  L+L  N  S      L          +  LDL  N
Sbjct: 73  QILAAIP-------------ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN 119

Query: 242 SLSGEIPEDIGTL-----ANITILALSNNALTG----AIPQSIRNM-TKLVTLRLDSNVL 291
             S +   +         A+IT L L  N L       + Q +  +   + +L L  N L
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 292 SGEISTWLFDL-----QGMKSLYLGGNKLKWNDNVSIV-----PKCMLTELSLRSCSVRG 341
           + +    L          + SL L  N L       +          +  L+L    + G
Sbjct: 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239

Query: 342 S----IPLWLSTQTELTFLDLSENEL 363
                + L   +   L  + L  + +
Sbjct: 240 PSLENLKLLKDSLKHLQTVYLDYDIV 265

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 41/219 (18%), Positives = 83/219 (37%), Gaps = 30/219 (13%)

Query: 110 RSLMTLDLSYNSMQ---GEVPGTGFANL-TRLTYLDLKDNNLNGSIPSQLFNL-----RY 160
            ++  LDL +N             F+NL   +T L+L+ N+L      +L  +       
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 161 LEFLDLSANAIEGK----LSSRVAGL-KNLKQLILDDNLIQGQIPAEIG-----NLTNLH 210
           +  L+L  N +  K    L+  +A +  ++  L L  NL+  +  AE+         ++ 
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 211 KLSLRQNKFSG----GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLA-------NITI 259
            L+L  N   G     + L    L+ L+T+ L  + +     E    L         I +
Sbjct: 229 SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL 288

Query: 260 LALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTW 298
           +  +   +  +    I N+ + ++ + D   L  +   +
Sbjct: 289 VDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIF 327

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 14/152 (9%)

Query: 131 FANLTRLTYLDLKDNNLNGS------IPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN 184
           F     +   + +   L+G       + + L  L+  + L LS N IE K+SS ++G++N
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMEN 71

Query: 185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS 244
           L+ L L  NLI+ +I         L +L +  N+ +    +   +L  L  L +  N ++
Sbjct: 72  LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIE--KLVNLRVLYMSNNKIT 128

Query: 245 --GEIPEDIGTLANITILALSNNALTGAIPQS 274
             GEI + +  L  +  L L+ N L     ++
Sbjct: 129 NWGEI-DKLAALDKLEDLLLAGNPLYNDYKEN 159

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
            LS N +  +I SSL  ++ L+ L+L  N ++  I +     + LE L +S+N ++  + 
Sbjct: 54  ALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL- 108

Query: 695 QTFAKLQQLTSLYLSNNKLS 714
               KL  L  LY+SNNK++
Sbjct: 109 SGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI 555
           L+LS N    ++  +LS +  L+ L L  N +  +     +   +L+ L +    +  S+
Sbjct: 53  LALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL 108

Query: 556 TDGLSNLTSLQILDLSNNNL 575
             G+  L +L++L +SNN +
Sbjct: 109 -SGIEKLVNLRVLYMSNNKI 127

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 6/109 (5%)

Query: 606 PVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQL 665
              I+D I  ++  K  +++++  +   +      +  ++ ++L +LK  K L LS N +
Sbjct: 4   ATTIKDAIRIFEERKSVVATEAEKVE--LHGMIPPIE-KMDATLSTLKACKHLALSTNNI 60

Query: 666 QGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           +  I S+   +E L  L L  N +  KI    A    L  L++S N+++
Sbjct: 61  E-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 49/182 (26%)

Query: 544 LNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIF 603
           L+     +E  +   LS L + + L LS NN+         +L GM              
Sbjct: 30  LHGMIPPIEK-MDATLSTLKACKHLALSTNNI-----EKISSLSGM-------------- 69

Query: 604 SFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYN 663
                ++ L                       L  N +  +I +       L+ L +SYN
Sbjct: 70  ---ENLRIL----------------------SLGRNLIK-KIENLDAVADTLEELWISYN 103

Query: 664 QLQGNIPSTFGNLEILETLDLSHNSLSG-KIPQTFAKLQQLTSLYLSNNKLSGRIPESPQ 722
           Q+  ++ S    L  L  L +S+N ++        A L +L  L L+ N L     E+  
Sbjct: 104 QIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161

Query: 723 MD 724
             
Sbjct: 162 TS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 57/185 (30%)

Query: 491 VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT---GEFPAFLSQLSSLQVLNLR 547
              + L          +   LS L   +HL L  NN+          LS + +L++L+L 
Sbjct: 25  AEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLG 78

Query: 548 NTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPV 607
              ++  I +  +   +L+ L +S N +     +S   ++        L  L  +     
Sbjct: 79  RNLIK-KIENLDAVADTLEELWISYNQI-----ASLSGIEK-------LVNLRVL----- 120

Query: 608 EIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS--GEIPSSLGSLKGLKSLNLSYNQL 665
                                       +SNN+++  GEI   L +L  L+ L L+ N L
Sbjct: 121 ---------------------------YMSNNKITNWGEI-DKLAALDKLEDLLLAGNPL 152

Query: 666 QGNIP 670
             +  
Sbjct: 153 YNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLS 167
            +++   L LS N+++ ++  +  + +  L  L L  N +   I +       LE L +S
Sbjct: 46  TLKACKHLALSTNNIE-KI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101

Query: 168 ANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKL 212
            N I   LS  +  L NL+ L + +N I      EI  L  L KL
Sbjct: 102 YNQIA-SLSG-IEKLVNLRVLYMSNNKITN--WGEIDKLAALDKL 142

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 1/85 (1%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
           +L +N+L          L  L  L+LS NQ+Q      F  L  L  L L  N L     
Sbjct: 34  ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93

Query: 695 QTFAKLQQLTSLYLSNNKLSGRIPE 719
             F KL QL  L L  N+L   +P+
Sbjct: 94  GVFDKLTQLKELALDTNQLK-SVPD 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 23/58 (39%), Positives = 26/58 (44%)

Query: 656 KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
             L L  N+LQ      F  L  L  L LS N +       F KL +LT LYL  NKL
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 634 MDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLSGK 692
           + LS NQ+          L  L  L L  N+LQ ++P+  F  L  L+ L L  N L   
Sbjct: 57  LSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSV 115

Query: 693 IPQTFAKLQQLTSLYLSNN 711
               F +L  L  ++L  N
Sbjct: 116 PDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA 533
           +  +S   +  VP+    +   L L  NK           L+ L  L L  N +      
Sbjct: 12  IRCNSKGLTS-VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70

Query: 534 FLSQLSSLQVLNLRNTALEGSITDGL-SNLTSLQILDLSNNNL 575
              +L+ L +L L    L+ S+ +G+   LT L+ L L  N L
Sbjct: 71  VFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 4/106 (3%)

Query: 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL-QLRKLETLDLQRNSLS 244
            +L L+ N +Q         LT L KLSL QN+    +P  +  +L KL  L L  N L 
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

Query: 245 GEIPEDI-GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289
             +P  +   L  +  LAL  N L          +T L  + L +N
Sbjct: 90  -SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 22/143 (15%)

Query: 63  SSDC-CRWEMVRCRSRG----PS-----QEVTGLDLNNLFPLDSIVTSVVLAPIF-RIRS 111
            S C C    +RC S+G    P+          L+ N L  L   V        F ++  
Sbjct: 2   PSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV--------FDKLTQ 53

Query: 112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANA 170
           L  L LS N +Q    G  F  LT+LT L L +N L  S+P+ +F  L  L+ L L  N 
Sbjct: 54  LTKLSLSQNQIQSLPDGV-FDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQ 111

Query: 171 IEGKLSSRVAGLKNLKQLILDDN 193
           ++         L +L+++ L  N
Sbjct: 112 LKSVPDGIFDRLTSLQKIWLHTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 133 NLTRLTYLDLKDNNLN-GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILD 191
               +  L L +   N G I         LEFL L    +   +S+ +  L  LK+L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ-LRKLETLDLQRNSLS 244
           +N I G +      L NL  L+L  NK      L  L+ L  L++LDL    ++
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 635 DLSNNQLS-GEIPSSLGSLKGLKSLNLSYNQLQ--GNIPSTFGNLEILETLDLSHNSLSG 691
            L N + + G+I         L+ L+L    L    N+P     L  L+ L+LS N + G
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFG 85

Query: 692 KIPQTFAKLQQLTSLYLSNNKLS 714
            +     KL  LT L LS NKL 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.4 bits (118), Expect = 4e-07
 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG-KI 693
            L N  L   + S+L  L  LK L LS N++ G +      L  L  L+LS N L     
Sbjct: 55  SLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 694 PQTFAKLQQLTSLYLSNN 711
            +   KL+ L SL L N 
Sbjct: 113 LEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG-S 554
           LSL           NL  L  L+ L+L +N + G       +L +L  LNL    L+  S
Sbjct: 54  LSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111

Query: 555 ITDGLSNLTSLQILDLSNN 573
             + L  L  L+ LDL N 
Sbjct: 112 TLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 490 GVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNT 549
            V  L+L   ++   G++    +    L+ L L +  L     + L +L  L+ L L   
Sbjct: 25  AVRELVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLIS--VSNLPKLPKLKKLELSEN 81

Query: 550 ALEGSITDGLSNLTSLQILDLSNNNL 575
            + G +      L +L  L+LS N L
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKL 107

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 182 LKNLKQLILDDNLIQ-GQIPAEIGNLTNLHKLSLRQNKFS--GGIPLSLLQLRKLETLDL 238
              +++L+LD+     G+I        NL  LSL          +P    +L KL+ L+L
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLEL 78

Query: 239 QRNSLSGEIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDSN 289
             N + G +      L N+T L LS N L   +  + ++ +  L +L L + 
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
            +L  L L    +      +    L +L  L+L +N + G +      L  L  L+LS N
Sbjct: 49  VNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN 105

Query: 170 AIEGKLS-SRVAGLKNLKQLILDDN 193
            ++   +   +  L+ LK L L + 
Sbjct: 106 KLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 4/117 (3%)

Query: 225 LSLLQLRKLETLDL-QRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVT 283
           L       +  L L    S  G+I        N+  L+L N  L      ++  + KL  
Sbjct: 18  LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKK 75

Query: 284 LRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC-MLTELSLRSCSV 339
           L L  N + G +      L  +  L L GNKLK    +  + K   L  L L +C V
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 50/176 (28%)

Query: 535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPS 594
            + +  L + N ++   +G I    +   +L+ L L N                 + + S
Sbjct: 23  PAAVRELVLDNCKSN--DGKIEGLTAEFVNLEFLSLINVG---------------LISVS 65

Query: 595 ILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKG 654
            LP LP++                               ++LS N++ G +      L  
Sbjct: 66  NLPKLPKLKK-----------------------------LELSENRIFGGLDMLAEKLPN 96

Query: 655 LKSLNLSYNQLQG-NIPSTFGNLEILETLDLSHNSLSGKI---PQTFAKLQQLTSL 706
           L  LNLS N+L+  +       LE L++LDL +  ++         F  L QLT L
Sbjct: 97  LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 133 NLTRLTYLDLKDNNLN-GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILD 191
             + +  L L ++  N G +         LEFL      +   +++ +  L  LK+L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRN 241
           DN + G +        NL  L+L  NK         L +L  L++LDL   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 635 DLSNNQLS-GEIPSSLGSLKGLKSLNLSYNQLQ--GNIPSTFGNLEILETLDLSHNSLSG 691
            L N++ + G++       + L+ L+     L    N+P     L  L+ L+LS N +SG
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSG 78

Query: 692 KIPQTFAKLQQLTSLYLSNNKLS 714
            +     K   LT L LS NK+ 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG-KI 693
              N  L+  I ++L  L  LK L LS N++ G +         L  L+LS N +     
Sbjct: 48  STINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105

Query: 694 PQTFAKLQQLTSLYLSNN 711
            +   KL+ L SL L N 
Sbjct: 106 IEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG-S 554
           LS      +  +  NL  L+ L+ L+L DN ++G       +  +L  LNL    ++  S
Sbjct: 47  LSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS 104

Query: 555 ITDGLSNLTSLQILDLSNN 573
             + L  L +L+ LDL N 
Sbjct: 105 TIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
             L  L      +   +       L +L  L+L DN ++G +         L  L+LS N
Sbjct: 42  EELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 170 AIEGKLS-SRVAGLKNLKQLILDDN 193
            I+   +   +  L+NLK L L + 
Sbjct: 99  KIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 491 VTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA 550
           V  L+L  S +   G+L         L+ L   +  LT    A L +L+ L+ L L +  
Sbjct: 19  VKELVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLTS--IANLPKLNKLKKLELSDNR 75

Query: 551 LEGSITDGLSNLTSLQILDLSNNNL 575
           + G +        +L  L+LS N +
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 157 NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ 216
           +++ L  LD S +   GKL       + L+ L   +  +   I A +  L  L KL L  
Sbjct: 18  DVKELV-LDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSD 73

Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLSG-EIPEDIGTLANITILALSNNALT 268
           N+ SGG+ +   +   L  L+L  N +      E +  L N+  L L N  +T
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 35/176 (19%), Positives = 60/176 (34%), Gaps = 50/176 (28%)

Query: 535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPS 594
            S +  L + N R+   EG +         L+ L   N                 + + +
Sbjct: 16  PSDVKELVLDNSRSN--EGKLEGLTDEFEELEFLSTINVG---------------LTSIA 58

Query: 595 ILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKG 654
            LP L ++                               ++LS+N++SG +         
Sbjct: 59  NLPKLNKL-----------------------------KKLELSDNRVSGGLEVLAEKCPN 89

Query: 655 LKSLNLSYNQLQG-NIPSTFGNLEILETLDLSHNSLSGKI---PQTFAKLQQLTSL 706
           L  LNLS N+++  +       LE L++LDL +  ++         F  L QLT L
Sbjct: 90  LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
            L+NNQ++   P     L  L+ L  + N+L       F  L  L  LDL+ N L   IP
Sbjct: 39  WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IP 97

Query: 695 Q-TFAKLQQLTSLYLSNN 711
           +  F  L+ LT +YL NN
Sbjct: 98  RGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT 704
           IP+        + L L+ NQ+    P  F +L  L+ L  + N L+      F KL QLT
Sbjct: 31  IPTDK------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84

Query: 705 SLYLSNNKL 713
            L L++N L
Sbjct: 85  QLDLNDNHL 93

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
            L +NQ++   P     L  L  L+L  NQL       F  L  L  L L+ N L   IP
Sbjct: 36  YLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IP 94

Query: 695 Q-TFAKLQQLTSLYLSNN 711
           +  F  L+ LT ++L NN
Sbjct: 95  RGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLT 704
           IP++       + L L  NQ+    P  F  L  L  LDL +N L+      F KL QLT
Sbjct: 28  IPTTT------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81

Query: 705 SLYLSNNKLSGRIPE 719
            L L++N+L   IP 
Sbjct: 82  QLSLNDNQLK-SIPR 95

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 2e-06
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 21/165 (12%)

Query: 148 NGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG--N 205
              +   L  +  L  L +        LS       NLK L +    +   +  +I   +
Sbjct: 161 QVDLSPVLDAMPLLNNLKIKGTNN---LSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 206 LTNLHKLSL--RQNKFSGGIPLSLLQ-------LRKLETLDLQRNSLSGEIPEDIGT--- 253
           L NL KL L      +     +++ +          L+ L +        + E       
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277

Query: 254 LANITILALSNNALTG----AIPQSIRNMTKLVTLRLDSNVLSGE 294
           L  +  + +S   LT      +   +  +  L  + +  N LS E
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 4e-06
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 15/159 (9%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLT--YLDLKDNNLNGSIPSQLFNLRY 160
           L+P+     L+       +    +      NL  L      L D+ +   + S L NL  
Sbjct: 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEK 223

Query: 161 LEFLDLSANAIEGKLSSRVAGL------KNLKQLILDDNLIQGQIP---AEIGNLTNLHK 211
           L       +       +    L       NLK L + D   Q  +     E   L  L  
Sbjct: 224 LVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 212 LSLRQNKFS--GGIPL--SLLQLRKLETLDLQRNSLSGE 246
           + +     +  G   L   + +++ L+ ++++ N LS E
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 3e-05
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 648 SLGSLKGLKSLNLSYNQLQGNIPSTFGN---LEILETLDLSHNSLSGK----IPQTFAKL 700
           S      LK L +   + Q  +   F     L  LET+D+S   L+ +    +     K+
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 701 QQLTSLYLSNNKLS 714
           + L  + +  N LS
Sbjct: 307 KHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 4e-05
 Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 21/180 (11%)

Query: 529 GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQIL--DLSNNNLLGKIPSSFGNL 586
            +    L  +  L  L ++ T           NL SL+I+   L ++ +   + S   NL
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL 221

Query: 587 QGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIP 646
           + ++     L    E + F  ++          +   S         + + + +    + 
Sbjct: 222 EKLV-----LYVGVEDYGFDGDMNVF-------RPLFSKDRFPNLKWLGIVDAEEQNVVV 269

Query: 647 SSLGS---LKGLKSLNLSYNQLQGN----IPSTFGNLEILETLDLSHNSLSGKIPQTFAK 699
                   L  L+++++S   L       +      ++ L+ +++ +N LS ++ +   K
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 7/71 (9%)

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQ---LSSLQVLNLRNTALEGS----ITDGLSNLTS 564
                L+ L + D            +   L  L+ +++    L       + D +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 565 LQILDLSNNNL 575
           L+ +++  N L
Sbjct: 309 LKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 5e-04
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 11/165 (6%)

Query: 505 GQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTS 564
             L   L  + LL +L +   N           L SL++++              S+L +
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPD-SVVEDILGSDLPN 220

Query: 565 LQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLS 624
           L+ L L                + +       P L  +     E Q+++V     +  L 
Sbjct: 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDR-FPNLKWLGIVDAEEQNVVV-----EMFLE 274

Query: 625 SKSLAIYSLMDLSNNQLSGE----IPSSLGSLKGLKSLNLSYNQL 665
           S  L     MD+S   L+ E    +   +  +K LK +N+ YN L
Sbjct: 275 SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 8e-04
 Identities = 16/141 (11%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 112 LMTLDLSYNSMQGE-VPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLR---------YL 161
           L +L++    +    V     ++L  L  L L     +      +   R          L
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254

Query: 162 EFLDLSANAIEGKLSSRVAG---LKNLKQLILDDNLIQG----QIPAEIGNLTNLHKLSL 214
           ++L +     +  +         L  L+ + +   ++       +   +  + +L  +++
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314

Query: 215 RQNKFSGGIPLSLLQLRKLET 235
           + N  S  +   L +   ++ 
Sbjct: 315 KYNYLSDEMKKELQKSLPMKI 335

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 9e-04
 Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 28/192 (14%)

Query: 371 LSELNLGTVILSDNMLT----GSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMV 426
              L  G +   +  ++      L P L     L+ L +   N    L        ++  
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---NLSIGKKPRPNLKS 197

Query: 427 LMLSSNNFSGHVPKSISNIY----RLLVLDLSNNSFSGEFPAFGSDSLVG--------HV 474
           L + S      V + I          LVL +    +  +        L           +
Sbjct: 198 LEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257

Query: 475 DISSNRFSGEVPSSFGVTILM-----LSLSENKFSG----QLPQNLSNLSLLQHLDLHDN 525
            I        V   F  + ++     + +S    +      L  ++  +  L+ +++  N
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

Query: 526 NLTGEFPAFLSQ 537
            L+ E    L +
Sbjct: 318 YLSDEMKKELQK 329

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 52/298 (17%), Positives = 103/298 (34%), Gaps = 30/298 (10%)

Query: 63  SSDCCRWEMVRCRSRGPSQEVTGLDLNNLFP---LDSIVTSVVLAPIFRIRSLMTLDLSY 119
           +SD   W+ +    +    +VTG  L+                LA  F    +  +DLS 
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 120 NSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLS--ANAIEGKLSS 177
           + ++        +  ++L  L L+   L+  I + L     L  L+LS  +   E  L +
Sbjct: 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT 162

Query: 178 RVAGLKNLKQLIL------DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLR 231
            ++    L +L L       +  +Q  +      +T L+    R+N     +   + +  
Sbjct: 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222

Query: 232 KLETLDLQR-NSLSGEIPEDIGTLANITILALSN-NALTGAIPQSIRNMTKLVTLRLDSN 289
            L  LDL     L  +  ++   L  +  L+LS    +       +  +  L TL++   
Sbjct: 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282

Query: 290 VLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL 347
           V  G           ++ L      L+ N           T ++  +   + +  +W 
Sbjct: 283 VPDG----------TLQLLKEALPHLQIN-------CSHFTTIARPTIGNKKNQEIWG 323

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 49/257 (19%), Positives = 84/257 (32%), Gaps = 27/257 (10%)

Query: 469 SLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT 528
           SL   +D++      +V        ++       F  Q      +   +QH+DL ++ + 
Sbjct: 47  SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106

Query: 529 -GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSN-----NNLLGKIPSS 582
                  LSQ S LQ L+L    L   I + L+  ++L  L+LS         L  + SS
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166

Query: 583 FGNLQG-------MIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSL-AIYSLM 634
              L               +   +         I  L ++    ++ L    L  +    
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVA---HVSETITQLNLS--GYRKNLQKSDLSTLVRRC 221

Query: 635 ------DLSN-NQLSGEIPSSLGSLKGLKSLNLSY-NQLQGNIPSTFGNLEILETLDLSH 686
                 DLS+   L  +       L  L+ L+LS    +        G +  L+TL +  
Sbjct: 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

Query: 687 NSLSGKIPQTFAKLQQL 703
               G +      L  L
Sbjct: 282 IVPDGTLQLLKEALPHL 298

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 40/253 (15%), Positives = 81/253 (32%), Gaps = 25/253 (9%)

Query: 134 LTRLTYLDLKDNNLNGSIPSQL-----FNLRYLEFLDLSANAIEGKLSSRVA-GLKNLKQ 187
           L+ L  L+L    +     + +          L+ ++L++  ++      +       ++
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 188 LILDDNLIQGQIPAEIG-----NLTNLHKLSLRQNKF--SGGIPLS--LLQLRKLETLDL 238
           L L  N +  +   ++      +   +  L L  N    +G   L   L     +  L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 239 QRNSLSGE----IPEDIGTLANITILALSNNALTG----AIPQSIRNMTKLVTLRLDSNV 290
               L  E    +   +     +  L ++ N        A+ ++ R    L  L L  N 
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

Query: 291 LSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ 350
           LS E    L DL G          +   +  ++     +  LS    ++       +   
Sbjct: 251 LSSEGRQVLRDLGGAAE-GGARVVVSLTEGTAVSEYWSV-ILSEVQRNLNSWDRARVQRH 308

Query: 351 TELTFLDLSENEL 363
            EL   DL ++  
Sbjct: 309 LELLLRDLEDSRG 321

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 48/317 (15%), Positives = 94/317 (29%), Gaps = 62/317 (19%)

Query: 422 TSVMVLMLSSNNFSGHVPKSI-----SNIYRLLVLDLSNNSFSGEFPAFGSDSLVG---- 472
           +S+  L L+    +      +     S  + L  ++L++          G  +L+     
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA----GLRTLLPVFLR 127

Query: 473 --HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGE 530
              + +  N    E         L   L  ++              +  L L +N LT  
Sbjct: 128 ARKLGLQLNSLGPE-----ACKDLRDLLLHDQ------------CQITTLRLSNNPLTAA 170

Query: 531 FPAFLSQL----SSLQVLNLRNTAL--EG--SITDGLSNLTSLQILDLSNNNLLGKIPSS 582
             A L +     +S+  L+L +T L  EG   +   L     LQ L+++ N       ++
Sbjct: 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA---GDTA 227

Query: 583 FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS 642
              L          P+L  +  +  E+            G +     +   +      +S
Sbjct: 228 ALALARAAREH---PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL-TEGTAVS 283

Query: 643 GEIPSSLGS-LKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKL- 700
                 L    + L S + +  Q              L   DL  +  +   P   A+L 
Sbjct: 284 EYWSVILSEVQRNLNSWDRARVQRHLE----------LLLRDLEDSRGATLNPWRKAQLL 333

Query: 701 ---QQLTSLYLSNNKLS 714
               ++ +L        
Sbjct: 334 RVEGEVRALLEQLGSSG 350

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 79/535 (14%), Positives = 166/535 (31%), Gaps = 75/535 (14%)

Query: 66  CCRWEMVRCRSR-----GPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYN 120
           C RW  +   +R           T   L+  FP    + S+ L    R      +  ++ 
Sbjct: 41  CRRWFKIDSETREHVTMALCYTATPDRLSRRFPN---LRSLKLKGKPRAAMFNLIPENWG 97

Query: 121 SMQGEVPGTGFANLTRLTYLDLK-----DNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL 175
                       NL +L  +  +     D +L+    ++  +L  L+ LD  +      L
Sbjct: 98  GYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK-LDKCSGFTTDGL 156

Query: 176 SSRVAGLKNLKQLILDDNLIQGQIPAEIG----NLTNLHKLSLRQNKFSGGIPLSLLQL- 230
            S V   + +K L+++++    +    +     + T+L  L+    +F+   P  L  + 
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216

Query: 231 ---RKLETLDLQRNSLS--GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLR 285
              R L ++ +    +       +    L      +L+ +        ++    KL  L 
Sbjct: 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 286 LDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC-MLTELSLRSCSVRGSIP 344
           L S +   E+         ++ L L    L+  D+ +++ KC  L  L  R+      + 
Sbjct: 277 L-SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335

Query: 345 LWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFES-RNLSVL 403
           +      +L  L +               +     ++S   L       L +  + L  +
Sbjct: 336 VLAQYCKQLKRLRIERGAD-------EQGMEDEEGLVSQRGLIA-----LAQGCQELEYM 383

Query: 404 VLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP 463
            +  ++ + E  E+IG                         +  L    L          
Sbjct: 384 AVYVSDITNESLESIGT-----------------------YLKNLCDFRLVLLDREERIT 420

Query: 464 AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNL-SNLSLLQHLDL 522
               D+ V  + I   +          +      L +   +      +      ++ + L
Sbjct: 421 DLPLDNGVRSLLIGCKK----------LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470

Query: 523 HDNNLTGE-FPAFLSQLSSLQVLNLRNTAL-EGSITDGLSNLTSLQILDLSNNNL 575
                + E    F     +LQ L +R     E +I   ++ L SL+ L +     
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 53/343 (15%), Positives = 105/343 (30%), Gaps = 45/343 (13%)

Query: 110 RSLMTLDLSYNSMQGEVP---GTGFANLTRLTYLDLKD--NNLNGSIPSQLF-NLRYLEF 163
           R+L  LDL  + +               T L  L++    + ++ S   +L      L+ 
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 164 LDLSANAIEGKLSSRVAGLKNLKQLILD------DNLIQGQIPAEIGNLTNLHKLSLRQN 217
           L L+      KL++ +     L++L            +   +   +     L  LS   +
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 218 KFSGGIPLSLLQLRKLETLDLQRNSLSGE-IPEDIGTLANITILALSNNALTGAIPQSIR 276
                +P       +L TL+L   ++    + + +     +  L + +      +     
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 277 NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK----WNDNVS------IVPK 326
               L  LR+  +             QG+ S+ +G  KL+    +   ++      I   
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395

Query: 327 C-MLTELSLRSCSVRG-----------SIPLWLSTQTELTFLDLSEN------ELEGTYP 368
              +T   L     +                 +    +L  L LS        E  GTY 
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYA 455

Query: 369 QWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFS 411
           + +  L++     SD      +   L    +L  L +    F 
Sbjct: 456 KKMEMLSVAFAGDSDL----GMHHVLSGCDSLRKLEIRDCPFG 494

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 70/535 (13%), Positives = 155/535 (28%), Gaps = 75/535 (14%)

Query: 66  CCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSI-----VTSVVLAPIFRIRSLMTLDLSYN 120
           C  W  +    R   ++V   +   + P   I     V SV L           +   + 
Sbjct: 34  CKSWYEIERWCR---RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWG 90

Query: 121 SMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLS--ANAIEGKLSS 177
                      ++ T L  + LK   +       +  + +  + L LS         L++
Sbjct: 91  GYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA 150

Query: 178 RVAGLKNLKQLILDDNLIQGQ----IPAEIGNLTNLHKLSLRQNKFS---GGIPLSLLQL 230
             A  +NLK+L L ++ +       +       T+L  L++           +   + + 
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALS------NNALTGAIPQSIRNMTKLVTL 284
             L++L L R     ++   +     +  L            +   +  ++    +L  L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 285 RLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC-MLTELSLRSCSVRGSI 343
               + +   +         + +L L    ++  D V ++ +C  L  L +        +
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330

Query: 344 PLWLSTQTELTFLDLSE-NELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSV 402
            +  ST  +L  L +             L+E  L +V +                  L  
Sbjct: 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG--------------CPKLES 376

Query: 403 LVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEF 462
           ++      +     TI ++                          +    L         
Sbjct: 377 VLYFCRQMTNAALITIARNRP-----------------------NMTRFRLCIIEPKAPD 413

Query: 463 PAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDL 522
                   +G   I  +             +  LSLS            +    ++ L +
Sbjct: 414 YLTLEPLDIGFGAIVEH----------CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSV 463

Query: 523 HDNNLTGE-FPAFLSQLSSLQVLNLRNTAL-EGSITDGLSNLTSLQILDLSNNNL 575
                +       LS   SL+ L +R+    + ++    S L +++ L +S+ ++
Sbjct: 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 502 KFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD-GLS 560
           K    LP    +   +Q +D  D+ +       +  L  ++ + L        I D  L 
Sbjct: 48  KDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH---YIEDGCLE 104

Query: 561 NLTSLQILDLSNNNL 575
            L+ L+ L  S   +
Sbjct: 105 RLSQLENLQKSMLEM 119

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 490 GVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHD-NNLTGEFPAFLSQLS----SLQVL 544
              I  +  +++        ++  L  ++ + L   + +       LSQL     S+  +
Sbjct: 60  KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEM 119

Query: 545 NLRNTALEGSITD----GLSNLTSLQILDLSN 572
            + +    G++TD     L +  +L+ L LS+
Sbjct: 120 EIISC---GNVTDKGIIALHHFRNLKYLFLSD 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	757
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.03
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.07
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.83

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=4e-92  Score=824.47  Aligned_cols=701  Identities=31%  Similarity=0.450  Sum_probs=620.5

Q ss_pred             CCCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceee-
Q 041016           23 LCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSV-  101 (757)
Q Consensus        23 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~-  101 (757)
                      +++.++|++||++||+++.   + +      . .+++|+.++|||+|.||+|+    .++|++++|++.     .+.|. 
T Consensus         7 ~~~~~~~~~all~~k~~~~---~-~------~-~l~~W~~~~~~C~w~gv~C~----~~~v~~L~L~~~-----~l~g~~   66 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLP---D-K------N-LLPDWSSNKNPCTFDGVTCR----DDKVTSIDLSSK-----PLNVGF   66 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCS---C-T------T-SSTTCCTTSCGGGSTTEEEE----TTEEEEEECTTS-----CCCEEH
T ss_pred             ccCCHHHHHHHHHHHhhCC---C-c------c-cccCCCCCCCCcCCcceEEC----CCcEEEEECCCC-----CcCCcc
Confidence            3567899999999999986   3 4      4 68899988899999999998    479999999987     78888 


Q ss_pred             --ccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCc--cccCCCCCCEEEccCCcCCCcccc
Q 041016          102 --VLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPS--QLFNLRYLEFLDLSANAIEGKLSS  177 (757)
Q Consensus       102 --~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~~~  177 (757)
                        +++.+.++++|+.++++.+.+. .+| ..|+++++|++|+|++|.++|.+|.  .++++++|++|+|++|.+.+..|.
T Consensus        67 ~~l~~~l~~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  144 (768)
T 3rgz_A           67 SAVSSSLLSLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV  144 (768)
T ss_dssp             HHHHHHTTTCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC
T ss_pred             CccChhHhccCcccccCCcCCCcC-CCc-hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH
Confidence              8899999999999999999875 466 6799999999999999999999998  999999999999999999988887


Q ss_pred             cc-cCCCCCCEEEccCccCCccCchh---ccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccC
Q 041016          178 RV-AGLKNLKQLILDDNLIQGQIPAE---IGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT  253 (757)
Q Consensus       178 ~~-~~l~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~  253 (757)
                      .+ .++++|++|++++|.+++..|..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+++.+|. +++
T Consensus       145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~  221 (768)
T 3rgz_A          145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGD  221 (768)
T ss_dssp             CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTT
T ss_pred             HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-ccc
Confidence            76 89999999999999999888877   89999999999999999977664  8899999999999999988887 999


Q ss_pred             CCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccC-Cccccee
Q 041016          254 LANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVP-KCMLTEL  332 (757)
Q Consensus       254 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L  332 (757)
                      +++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..  .+++|++|++++|.++......+.. +..|++|
T Consensus       222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L  299 (768)
T 3rgz_A          222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL  299 (768)
T ss_dssp             CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred             CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence            999999999999999999999999999999999999999888765  8999999999999988433334434 4789999


Q ss_pred             ecCCccCccCcchhccCCCCCCEEEccCCcccCccccc-ccCcc-ccEEEcCCCcCCCCCCCCccCCC-CCCEEeCcCcc
Q 041016          333 SLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQW-LSELN-LGTVILSDNMLTGSLPPPLFESR-NLSVLVLSRNN  409 (757)
Q Consensus       333 ~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~~~-L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~L~~n~  409 (757)
                      ++++|.+++.+|.+++.+++|++|++++|++.+.+|.. +..++ |++|++++|++++.+|..+..++ +|++|++++|.
T Consensus       300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~  379 (768)
T 3rgz_A          300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN  379 (768)
T ss_dssp             ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSE
T ss_pred             ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCC
Confidence            99999999999999999999999999999999888875 78887 99999999999999999999887 99999999999


Q ss_pred             ccccCCcccCC--CCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCC
Q 041016          410 FSGELPETIGQ--STSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVP  486 (757)
Q Consensus       410 l~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~  486 (757)
                      +++.++..+..  +++|++|++++|.+++.+|..+.++++|++|++++|.+++.+| .+..+++|++|++++|++.+.+|
T Consensus       380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  459 (768)
T 3rgz_A          380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP  459 (768)
T ss_dssp             EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence            99999888877  8899999999999999999999999999999999999999888 89999999999999999999999


Q ss_pred             chhhhc--ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCC
Q 041016          487 SSFGVT--ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTS  564 (757)
Q Consensus       487 ~~~~~~--l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  564 (757)
                      ..+...  +++|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++
T Consensus       460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  539 (768)
T 3rgz_A          460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS  539 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT
T ss_pred             HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence            988754  999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEECcCCcccccCCcccccccccccCCCCCC---------CCCcccC-----------Ccccccee------Ee--ee
Q 041016          565 LQILDLSNNNLLGKIPSSFGNLQGMIDTPSILP---------TLPEIFS-----------FPVEIQDL------IV--NW  616 (757)
Q Consensus       565 L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~---------~~~~~~~-----------~~~~~~~l------~~--~~  616 (757)
                      |++|++++|+++|.+|..+.....+........         .......           .+..+..+      .+  ..
T Consensus       540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  619 (768)
T 3rgz_A          540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV  619 (768)
T ss_dssp             CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred             CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence            999999999999999999877665532211000         0000000           00000000      00  00


Q ss_pred             ccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCC
Q 041016          617 KNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQT  696 (757)
Q Consensus       617 ~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  696 (757)
                      ...........++.++.|||++|+++|.+|..|+++++|++|+|++|+++|.+|+.|+++++|++|||++|+++|.+|..
T Consensus       620 ~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~  699 (768)
T 3rgz_A          620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA  699 (768)
T ss_dssp             EEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred             ecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence            00000112234678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 041016          697 FAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQVVCPEDVQ  752 (757)
Q Consensus       697 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc~~~l~~~c~~~~~  752 (757)
                      +..+++|++||+++|+++|.||+++||+++...+ |.|||+|||+|+. +|....+
T Consensus       700 l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~-~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          700 MSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK-FLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             GGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG-GCSCTEEESTTSC-CCCSCC-
T ss_pred             HhCCCCCCEEECcCCcccccCCCchhhccCCHHH-hcCCchhcCCCCc-CCCCCcc
Confidence            9999999999999999999999999999999999 9999999999986 8976654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.7e-70  Score=638.82  Aligned_cols=564  Identities=34%  Similarity=0.517  Sum_probs=420.5

Q ss_pred             cccccCCCCCCEEeCCCCCCCCCCCcc--ccCCCCCCCEEeCCCCcCCCCcCccc-cCCCCCCEEEccCCcCCCccccc-
Q 041016          103 LAPIFRIRSLMTLDLSYNSMQGEVPGT--GFANLTRLTYLDLKDNNLNGSIPSQL-FNLRYLEFLDLSANAIEGKLSSR-  178 (757)
Q Consensus       103 ~~~l~~l~~L~~L~Ls~n~l~~~i~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~~~~-  178 (757)
                      +..+.++++|++|||++|.++|.+| .  .++++++|++|+|++|.+++.+|..+ .++++|++|++++|.+++..+.. 
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  171 (768)
T 3rgz_A           93 VSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW  171 (768)
T ss_dssp             CCCCCCCTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred             chhhccCCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence            3567777777777777777777666 4  67777777777777777777766655 67777777777777777666665 


Q ss_pred             --ccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCC
Q 041016          179 --VAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN  256 (757)
Q Consensus       179 --~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  256 (757)
                        +.++++|++|++++|.+.+..|.  .++++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+..+++
T Consensus       172 ~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  248 (768)
T 3rgz_A          172 VLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE  248 (768)
T ss_dssp             HHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred             hhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence              66777777777777777655443  6677777777777777766665 777777777777777777777777777777


Q ss_pred             CCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhcc-CCCcEEEccCCCCcCCCcccccCCcccceeecC
Q 041016          257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDL-QGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLR  335 (757)
Q Consensus       257 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  335 (757)
                      |++|++++|.+.+.+|..  .+++|++|++++|.+++.+|..+... ++|++|++++|.++......+.....|++|+++
T Consensus       249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  326 (768)
T 3rgz_A          249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS  326 (768)
T ss_dssp             CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence            777777777777665554  66777777777777777777666554 777777777777765555556666667777777


Q ss_pred             CccCccCcchh-ccCCCCCCEEEccCCcccCcccccccCc--cccEEEcCCCcCCCCCCCCccC--CCCCCEEeCcCccc
Q 041016          336 SCSVRGSIPLW-LSTQTELTFLDLSENELEGTYPQWLSEL--NLGTVILSDNMLTGSLPPPLFE--SRNLSVLVLSRNNF  410 (757)
Q Consensus       336 ~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~--~~~L~~L~L~~n~l  410 (757)
                      +|.+.+.+|.. +..+++|++|++++|++.+.+|..+..+  .|++|++++|++++.+|..+..  +++|++|++++|.+
T Consensus       327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF  406 (768)
T ss_dssp             SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred             CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence            77776666654 6777777777777777777777666655  3777777777777666666655  56777777777777


Q ss_pred             cccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchh
Q 041016          411 SGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSF  489 (757)
Q Consensus       411 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~  489 (757)
                      ++.+|..+..+++|++|++++|.+++.+|..+.++++|+.|++++|.+.+.+| .+..+++|++|++++|++++.+|..+
T Consensus       407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l  486 (768)
T 3rgz_A          407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL  486 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence            77777777777777777777777777777777777777777777777776666 56677777777777777777777666


Q ss_pred             hhc--ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCc----------
Q 041016          490 GVT--ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD----------  557 (757)
Q Consensus       490 ~~~--l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----------  557 (757)
                      ...  +++|++++|++++.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|+++|.+|.          
T Consensus       487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~  566 (768)
T 3rgz_A          487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA  566 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred             hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence            543  77777777777777777777777777777777777777777777777777777777776655554          


Q ss_pred             ------------------------------------------------------------ccCCCCCCCEEECcCCcccc
Q 041016          558 ------------------------------------------------------------GLSNLTSLQILDLSNNNLLG  577 (757)
Q Consensus       558 ------------------------------------------------------------~l~~l~~L~~L~ls~n~l~~  577 (757)
                                                                                  .+..+++|+.||+++|+++|
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g  646 (768)
T 3rgz_A          567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG  646 (768)
T ss_dssp             CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence                                                                        34456778888888888888


Q ss_pred             cCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCE
Q 041016          578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKS  657 (757)
Q Consensus       578 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~  657 (757)
                      .+|..+++++.|                                          +.|+|++|+++|.+|..|+++++|++
T Consensus       647 ~ip~~l~~l~~L------------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~  684 (768)
T 3rgz_A          647 YIPKEIGSMPYL------------------------------------------FILNLGHNDISGSIPDEVGDLRGLNI  684 (768)
T ss_dssp             CCCGGGGGCTTC------------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cCCHHHhccccC------------------------------------------CEEeCcCCccCCCCChHHhCCCCCCE
Confidence            888887776655                                          89999999999999999999999999


Q ss_pred             EeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCc-cee
Q 041016          658 LNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNK-LSG  715 (757)
Q Consensus       658 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g  715 (757)
                      |||++|+++|.+|..|+.+++|++||+++|+++|.+|.. ..+..+....+.+|+ +.|
T Consensus       685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence            999999999999999999999999999999999999975 345666777788887 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.2e-61  Score=560.09  Aligned_cols=575  Identities=23%  Similarity=0.246  Sum_probs=493.5

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +++++|++++|.+++ ++...|.++++|++|++++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            689999999999985 4547899999999999999999988899999999999999999999987777899999999999


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCccccc--CCCCCCEEEccCCCC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIG--TLANITILALSNNAL  267 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l  267 (757)
                      +++|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+.  .+++|++|++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            999999987788899999999999999999988888899999999999999999887777654  568999999999999


Q ss_pred             CCccchhhhcCCCCCEEEccCCccccccchhhh---ccCCCcEEEccCCCCcCCCcccccCCcc--cceeecCCccCccC
Q 041016          268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF---DLQGMKSLYLGGNKLKWNDNVSIVPKCM--LTELSLRSCSVRGS  342 (757)
Q Consensus       268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~--L~~L~L~~~~~~~~  342 (757)
                      ++..|..+..+++|+.+++.++.+.+.....+.   ..++|+.|++++|.++......+.....  |++|++++|.+.+.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            988899999999999999999887644333222   3578999999999998776666665544  99999999999988


Q ss_pred             cchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCC-----CCCC----CccCCCCCCEEeCcCccccc
Q 041016          343 IPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTG-----SLPP----PLFESRNLSVLVLSRNNFSG  412 (757)
Q Consensus       343 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~-----~~~~----~l~~~~~L~~L~L~~n~l~~  412 (757)
                      .|.++..+++|++|++++|++.+..|..+..+. |+++++++|...+     .+|.    .+..+++|++|++++|.+++
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            888999999999999999999998888888887 9999999876554     2332    67788999999999999999


Q ss_pred             cCCcccCCCCCccEEEccCCcccc--cChHhhhcc--CCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCC-
Q 041016          413 ELPETIGQSTSVMVLMLSSNNFSG--HVPKSISNI--YRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVP-  486 (757)
Q Consensus       413 ~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l--~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~-  486 (757)
                      ..+..|..+++|++|++++|.+..  .....|..+  ++|+.|++++|.+++..| .+..+++|++|++++|++.+.+| 
T Consensus       344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  423 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG  423 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred             CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence            888899999999999999997542  233344433  589999999999998877 88999999999999999998776 


Q ss_pred             chhhhc--ccEEEccCCccccccchhccCCCCCCEEeCcCCccc--CcchhhccCCCCCCEEEccCCcCccccCcccCCC
Q 041016          487 SSFGVT--ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT--GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNL  562 (757)
Q Consensus       487 ~~~~~~--l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l  562 (757)
                      ..+...  +++|++++|++.+..+..|..+++|++|++++|.+.  +..|..+..+++|++|++++|++++..+..|..+
T Consensus       424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l  503 (680)
T 1ziw_A          424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL  503 (680)
T ss_dssp             GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence            444433  999999999999999999999999999999999987  5788899999999999999999998888889999


Q ss_pred             CCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCC
Q 041016          563 TSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS  642 (757)
Q Consensus       563 ~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~  642 (757)
                      ++|++|++++|++++..+..+..-.                                  ......++.|+.|+|++|+++
T Consensus       504 ~~L~~L~Ls~N~l~~~~~~~~~~~~----------------------------------~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          504 EKLEILDLQHNNLARLWKHANPGGP----------------------------------IYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             TTCCEEECCSSCCGGGGSTTSTTSC----------------------------------CCTTTTCTTCCEEECCSSCCC
T ss_pred             cccCEEeCCCCCccccchhhccCCc----------------------------------chhhcCCCCCCEEECCCCCCC
Confidence            9999999999999865333221000                                  000112566799999999999


Q ss_pred             CcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCcc-CCCCCCEEeCCCCcceecCCC
Q 041016          643 GEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFA-KLQQLTSLYLSNNKLSGRIPE  719 (757)
Q Consensus       643 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~iP~  719 (757)
                      ...+..|.++++|++|+|++|++++.++..|.++++|++|++++|++++..|..+. .+++|++|++++|++.+.-+.
T Consensus       550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            55556799999999999999999988888899999999999999999998888787 789999999999999987664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.1e-61  Score=560.21  Aligned_cols=584  Identities=24%  Similarity=0.231  Sum_probs=508.6

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      +.+|.++++++ .+| ..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus         7 ~~~~cs~~~L~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~   82 (680)
T 1ziw_A            7 EVADCSHLKLT-QVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH   82 (680)
T ss_dssp             SEEECCSSCCS-SCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred             CeeECCCCCcc-ccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence            46788888887 677 4443  7999999999999988778899999999999999999999999999999999999999


Q ss_pred             ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccc
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP  272 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  272 (757)
                      |.+++..+..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+
T Consensus        83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A           83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred             CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence            99997666689999999999999999998878899999999999999999999888899999999999999999998877


Q ss_pred             hhhh--cCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccc---cCCcccceeecCCccCccCcchhc
Q 041016          273 QSIR--NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSI---VPKCMLTELSLRSCSVRGSIPLWL  347 (757)
Q Consensus       273 ~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~l  347 (757)
                      ..+.  .+++|++|++++|.+++..+..+..+++|+.+++.++.+.......+   .....|++|++++|.+.+..|.++
T Consensus       163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~  242 (680)
T 1ziw_A          163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF  242 (680)
T ss_dssp             HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred             HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence            7665  45899999999999999999999999999999999988753221111   234679999999999999889999


Q ss_pred             cCCCC--CCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccc-----cCCc---
Q 041016          348 STQTE--LTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG-----ELPE---  416 (757)
Q Consensus       348 ~~~~~--L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~-----~~~~---  416 (757)
                      ..++.  |+.|++++|++.+..+..+..++ |++|++++|++.+..|..+..+++|++|++++|...+     .+|.   
T Consensus       243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~  322 (680)
T 1ziw_A          243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD  322 (680)
T ss_dssp             GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred             hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence            88755  99999999999988888888887 9999999999999999999999999999999876543     2232   


Q ss_pred             -ccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCccccc-CC--CCCC--CCcccEEECcCCccccCCCchhh
Q 041016          417 -TIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE-FP--AFGS--DSLVGHVDISSNRFSGEVPSSFG  490 (757)
Q Consensus       417 -~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~--~~~~--~~~L~~L~l~~n~l~~~~~~~~~  490 (757)
                       .+..+++|++|++++|.+.+..+..|.++++|++|++++|.+... ++  .+..  .+.|+.|++++|++++..|..+.
T Consensus       323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~  402 (680)
T 1ziw_A          323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS  402 (680)
T ss_dssp             TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred             hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence             678899999999999999999899999999999999999986432 22  2322  36899999999999998888776


Q ss_pred             hc--ccEEEccCCccccccc-hhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCc--cccCcccCCCCCC
Q 041016          491 VT--ILMLSLSENKFSGQLP-QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALE--GSITDGLSNLTSL  565 (757)
Q Consensus       491 ~~--l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~L  565 (757)
                      ..  ++.|++++|.+++.+| ..|.++++|++|++++|++.+..+..|..+++|++|++++|.+.  +.+|..|..+++|
T Consensus       403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L  482 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL  482 (680)
T ss_dssp             TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred             CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence            54  9999999999998766 78999999999999999999888999999999999999999987  5688899999999


Q ss_pred             CEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcC
Q 041016          566 QILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEI  645 (757)
Q Consensus       566 ~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~  645 (757)
                      ++|++++|++++..|..|.++++|                                          +.|++++|++++..
T Consensus       483 ~~L~Ls~N~l~~i~~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~~~  520 (680)
T 1ziw_A          483 TILDLSNNNIANINDDMLEGLEKL------------------------------------------EILDLQHNNLARLW  520 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTC------------------------------------------CEEECCSSCCGGGG
T ss_pred             CEEECCCCCCCcCChhhhcccccc------------------------------------------CEEeCCCCCccccc
Confidence            999999999998777777766555                                          89999999998652


Q ss_pred             C--------ccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecC
Q 041016          646 P--------SSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRI  717 (757)
Q Consensus       646 p--------~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  717 (757)
                      +        ..|.++++|++|+|++|+++...+..|.++++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus       521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            2        24789999999999999999766678999999999999999999888888999999999999999999877


Q ss_pred             CCCC--CCCCCCCCccccCCCCCCCCCC
Q 041016          718 PESP--QMDRQIDPVIYANNSGLCGMQI  743 (757)
Q Consensus       718 P~~~--~~~~~~~~~~~~gn~~lc~~~l  743 (757)
                      |...  .+.++.... +.|||..|++++
T Consensus       601 ~~~~~~~~~~L~~l~-l~~N~~~c~c~~  627 (680)
T 1ziw_A          601 KKVFGPAFRNLTELD-MRFNPFDCTCES  627 (680)
T ss_dssp             HHHHHHHHTTCSEEE-CTTCCCCBCCCC
T ss_pred             hhHhcccccccCEEE-ccCCCcccCCcc
Confidence            6531  345555566 899999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.5e-56  Score=512.58  Aligned_cols=530  Identities=21%  Similarity=0.209  Sum_probs=439.6

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      ++++.++..++ .+| ..+.  +++++|++++|.+++..|..|+++++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus        15 ~~~~c~~~~l~-~iP-~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           15 KTYNCENLGLN-EIP-GTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TEEECTTSCCS-SCC-TTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ceEECCCCCcc-cCc-CCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence            47888888887 677 4443  4799999999999988888999999999999999999988899999999999999999


Q ss_pred             ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccc
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP  272 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  272 (757)
                      |.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++.....+..+++|++|++++|.+++..+
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence            99998889999999999999999999997777889999999999999999987544455558999999999999988778


Q ss_pred             hhhhcCCCCC--EEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCC
Q 041016          273 QSIRNMTKLV--TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ  350 (757)
Q Consensus       273 ~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  350 (757)
                      ..++.+++|+  +|++++|.+++..+..+. ...|++|++++|..                           ++..+..+
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---------------------------~~~~~~~l  222 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---------------------------LLVIFKGL  222 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---------------------------HHHHHHHT
T ss_pred             hhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---------------------------HHHHhhhc
Confidence            8889999998  888999998876666543 35778888877651                           12222222


Q ss_pred             CCCCEEEccCC--------cccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCC
Q 041016          351 TELTFLDLSEN--------ELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQST  422 (757)
Q Consensus       351 ~~L~~L~l~~n--------~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  422 (757)
                      .+++...+...        .+.......+....++.+++++|.+.+..+..+..+++|++|++++|.++ .+|..+..++
T Consensus       223 ~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~  301 (606)
T 3t6q_A          223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS  301 (606)
T ss_dssp             TTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT
T ss_pred             cccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccc
Confidence            22222222111        11111122223335888888888888777777888899999999999887 6777888889


Q ss_pred             CccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC--CCCCCCcccEEECcCCccccCC--Cchhhh--cccEE
Q 041016          423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP--AFGSDSLVGHVDISSNRFSGEV--PSSFGV--TILML  496 (757)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~--~~~~~~--~l~~L  496 (757)
                      +|++|++++|.+.+..|..+..+++|++|++++|.+.+.++  .+..+++|++|++++|++.+..  +..+..  .++.|
T Consensus       302 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  381 (606)
T 3t6q_A          302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL  381 (606)
T ss_dssp             TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred             cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence            99999999999888888888899999999999998887776  4888899999999999888765  444443  38999


Q ss_pred             EccCCccccccchhccCCCCCCEEeCcCCcccCcchh-hccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcc
Q 041016          497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA-FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL  575 (757)
Q Consensus       497 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l  575 (757)
                      ++++|++.+..|..|..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|++
T Consensus       382 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  461 (606)
T 3t6q_A          382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF  461 (606)
T ss_dssp             ECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred             ECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence            9999999988899999999999999999999877654 488999999999999999998999999999999999999999


Q ss_pred             cccC---CcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCC
Q 041016          576 LGKI---PSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSL  652 (757)
Q Consensus       576 ~~~~---p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l  652 (757)
                      .+..   +..+..+                                          +.|+.|++++|++++..|..|+.+
T Consensus       462 ~~~~~~~~~~~~~l------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l  499 (606)
T 3t6q_A          462 PKGNIQKTNSLQTL------------------------------------------GRLEILVLSFCDLSSIDQHAFTSL  499 (606)
T ss_dssp             GGGEECSSCGGGGC------------------------------------------TTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CccccccchhhccC------------------------------------------CCccEEECCCCccCccChhhhccc
Confidence            8632   2334443                                          455999999999999999999999


Q ss_pred             CCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016          653 KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP  718 (757)
Q Consensus       653 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  718 (757)
                      ++|++|+|++|++++.+|+.|.+++.| +|++++|++++.+|..+..+++|++|++++|++.+..+
T Consensus       500 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          500 KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            999999999999999999999999999 99999999999999999999999999999999998766

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.7e-56  Score=507.17  Aligned_cols=514  Identities=24%  Similarity=0.244  Sum_probs=394.0

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +++++|++++|.+++..| .+|+++++|++|+|++|.+++..|.+|+++++|++|+|++|.+.+..|..|+++++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            378999999999986555 8899999999999999999988899999999999999999999999999999999999999


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCC--EEEccCCCC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT--ILALSNNAL  267 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l  267 (757)
                      +++|.+++..|..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+  .|++++|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            999999987788899999999999999999975545566699999999999999988899999999999  999999999


Q ss_pred             CCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcC-----CCcccccCCc--ccceeecCCccCc
Q 041016          268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKW-----NDNVSIVPKC--MLTELSLRSCSVR  340 (757)
Q Consensus       268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-----~~~~~~~~~~--~L~~L~L~~~~~~  340 (757)
                      .+..|..+.. .+|++|++++|.   ..+..+..+.+++...+....+..     +....+....  .+++|++++|.+.
T Consensus       192 ~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          192 AGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             CccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence            9877766654 689999999987   355666677766655554443332     1222222222  4677777777776


Q ss_pred             cCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCc-cc
Q 041016          341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPE-TI  418 (757)
Q Consensus       341 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~-~~  418 (757)
                      +..+..|..+++|++|++++|+++ .+|..+..++ |++|++++|++.+..|..+..+++|++|++++|.+.+.++. .+
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence            666666777777777777777666 4444444444 55555555555544444555555555555555555433332 24


Q ss_pred             CCCCCccEEEccCCcccccC--hHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccE
Q 041016          419 GQSTSVMVLMLSSNNFSGHV--PKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILM  495 (757)
Q Consensus       419 ~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  495 (757)
                      ..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..+ .+..+++|                      +.
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------------------~~  404 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL----------------------EL  404 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC----------------------SE
T ss_pred             hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC----------------------Ce
Confidence            45555555555555554433  4444555555555555555544443 44444444                      45


Q ss_pred             EEccCCccccccc-hhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccc---cCcccCCCCCCCEEECc
Q 041016          496 LSLSENKFSGQLP-QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS---ITDGLSNLTSLQILDLS  571 (757)
Q Consensus       496 L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L~ls  571 (757)
                      |++++|++.+..+ ..+.++++|++|++++|.+++..|..+..+++|++|++++|++.+.   .+..+..+++|++|+++
T Consensus       405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls  484 (606)
T 3t6q_A          405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS  484 (606)
T ss_dssp             EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred             EECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECC
Confidence            5555555554443 3478899999999999999988899999999999999999999863   23678999999999999


Q ss_pred             CCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccC
Q 041016          572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGS  651 (757)
Q Consensus       572 ~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~  651 (757)
                      +|++++..|..|.+++.|                                          +.|+|++|++++..|..+.+
T Consensus       485 ~n~l~~~~~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~~~~~~l~~  522 (606)
T 3t6q_A          485 FCDLSSIDQHAFTSLKMM------------------------------------------NHVDLSHNRLTSSSIEALSH  522 (606)
T ss_dssp             TSCCCEECTTTTTTCTTC------------------------------------------CEEECCSSCCCGGGGGGGTT
T ss_pred             CCccCccChhhhccccCC------------------------------------------CEEECCCCccCcCChhHhCc
Confidence            999999888888776655                                          89999999999999999999


Q ss_pred             CCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCC
Q 041016          652 LKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP  694 (757)
Q Consensus       652 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  694 (757)
                      ++.| +|++++|++++.+|+.|..+++|++|++++|++.+..+
T Consensus       523 l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999 99999999999999999999999999999999987554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.5e-55  Score=504.23  Aligned_cols=529  Identities=23%  Similarity=0.229  Sum_probs=436.2

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEcc
Q 041016          112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILD  191 (757)
Q Consensus       112 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  191 (757)
                      -++++.+++.++ .+| ..+.  +++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        13 ~~~~~c~~~~l~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           13 NITYQCMDQKLS-KVP-DDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTEEECTTSCCS-SCC-TTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEccCCCcc-cCC-CCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence            367889988887 677 3333  789999999999998777789999999999999999988888888899999999999


Q ss_pred             CccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcc-cCcccccCCCCCCEEEccCCCCCCc
Q 041016          192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSG-EIPEDIGTLANITILALSNNALTGA  270 (757)
Q Consensus       192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~  270 (757)
                      +|.+++..|.+|+++++|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++.
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            999888778888899999999999998887777788888888888888888875 5688888888888888888888877


Q ss_pred             cchhhhcCCCCC----EEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchh
Q 041016          271 IPQSIRNMTKLV----TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW  346 (757)
Q Consensus       271 ~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  346 (757)
                      .+..++.+++|+    +|++++|.+++..+..+... +|++|++++|.+..                       +..|.+
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~-----------------------~~~~~~  224 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSS-----------------------NIMKTC  224 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCH-----------------------HHHHHH
T ss_pred             ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccch-----------------------hHHHHH
Confidence            677676665544    67777777765444443333 66666666665541                       355677


Q ss_pred             ccCCCCCCEEEccCCcccCc---------ccccccCccccEEEc-CCCcCCCCCCCCccCCCCCCEEeCcCccccccCCc
Q 041016          347 LSTQTELTFLDLSENELEGT---------YPQWLSELNLGTVIL-SDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPE  416 (757)
Q Consensus       347 l~~~~~L~~L~l~~n~l~~~---------~~~~~~~~~L~~L~l-~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~  416 (757)
                      +..+++++.+++..+.+.+.         .+..+..+.++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| 
T Consensus       225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-  301 (606)
T 3vq2_A          225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-  301 (606)
T ss_dssp             HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-
T ss_pred             hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-
Confidence            78888888877765443321         122233344788888 77788877777 8888999999999999964 45 


Q ss_pred             ccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccC--CCchhhhc--
Q 041016          417 TIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE--VPSSFGVT--  492 (757)
Q Consensus       417 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~--  492 (757)
                      .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.+ .+..+++|++|++++|++++.  .|..+...  
T Consensus       302 ~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~  377 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS  377 (606)
T ss_dssp             CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred             hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence            788899999999999999 5777 45 8999999999999766555 667889999999999999876  36655543  


Q ss_pred             ccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcch-hhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECc
Q 041016          493 ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS  571 (757)
Q Consensus       493 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls  571 (757)
                      ++.|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus       378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            9999999999886 55889999999999999999998877 688999999999999999999999999999999999999


Q ss_pred             CCcccc-cCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCcccc
Q 041016          572 NNNLLG-KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLG  650 (757)
Q Consensus       572 ~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~  650 (757)
                      +|++++ .+|..+..+++|                                          +.|++++|++++..|..|+
T Consensus       457 ~n~l~~~~~~~~~~~l~~L------------------------------------------~~L~Ls~n~l~~~~~~~~~  494 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNL------------------------------------------TFLDLSKCQLEQISWGVFD  494 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTC------------------------------------------CEEECTTSCCCEECTTTTT
T ss_pred             CCcCCCcchHHhhccCCCC------------------------------------------CEEECCCCcCCccChhhhc
Confidence            999998 477777766555                                          9999999999999999999


Q ss_pred             CCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCC-CCCEEeCCCCcceecCCC
Q 041016          651 SLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ-QLTSLYLSNNKLSGRIPE  719 (757)
Q Consensus       651 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~  719 (757)
                      ++++|++|++++|++++.+|..|+++++|++|++++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999999999999999999999 5676788887 699999999999987664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-54  Score=493.46  Aligned_cols=510  Identities=22%  Similarity=0.235  Sum_probs=427.0

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +++++|++++|.+++..+ ..|+++++|++|++++|.+++..|.+|+++++|++|+|++|.+++..|..|+++++|++|+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            789999999999985554 7899999999999999999988888999999999999999999988899999999999999


Q ss_pred             ccCccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCCC----EEEccC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT----ILALSN  264 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~  264 (757)
                      +++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+    +|++++
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            99999998777889999999999999999986 5689999999999999999999988888777766654    899999


Q ss_pred             CCCCCccchhhhcCCCCCEEEccCCccc-cccchhhhccCCCcEEEccCCCCcC------CCcccccCC--cccceeec-
Q 041016          265 NALTGAIPQSIRNMTKLVTLRLDSNVLS-GEISTWLFDLQGMKSLYLGGNKLKW------NDNVSIVPK--CMLTELSL-  334 (757)
Q Consensus       265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~~--~~L~~L~L-  334 (757)
                      |.+++..+..+... +|++|++++|.++ +..+..+.++++|+.+++..+.+..      .....+...  ..++.+++ 
T Consensus       191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~  269 (606)
T 3vq2_A          191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT  269 (606)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred             CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence            99986655555544 8999999999886 5677888999999998887655442      122222222  23677777 


Q ss_pred             CCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCcccccc
Q 041016          335 RSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGE  413 (757)
Q Consensus       335 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~  413 (757)
                      ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+. |++|++++|.+ +.+| .+ .+++|++|++++|...+.
T Consensus       270 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~  343 (606)
T 3vq2_A          270 YTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS  343 (606)
T ss_dssp             CCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred             ccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence            66677777776 8889999999999999864 44 666665 99999999998 6777 44 889999999999965544


Q ss_pred             CCcccCCCCCccEEEccCCccccc--ChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhh
Q 041016          414 LPETIGQSTSVMVLMLSSNNFSGH--VPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGV  491 (757)
Q Consensus       414 ~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  491 (757)
                      .  .+..+++|++|++++|.+++.  .+..+..+++|++|++++|.+.+..+.+..+++|++|++++|++.+        
T Consensus       344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~--------  413 (606)
T 3vq2_A          344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR--------  413 (606)
T ss_dssp             C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES--------
T ss_pred             h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC--------
Confidence            4  567889999999999988866  3788889999999999999888655577778888777777776654        


Q ss_pred             cccEEEccCCccccccc-hhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcc-ccCcccCCCCCCCEEE
Q 041016          492 TILMLSLSENKFSGQLP-QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG-SITDGLSNLTSLQILD  569 (757)
Q Consensus       492 ~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L~~L~  569 (757)
                                    ..| ..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+ .+|..+..+++|++|+
T Consensus       414 --------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  479 (606)
T 3vq2_A          414 --------------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD  479 (606)
T ss_dssp             --------------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             --------------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence                          333 467789999999999999998899999999999999999999987 4788899999999999


Q ss_pred             CcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccc
Q 041016          570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL  649 (757)
Q Consensus       570 ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l  649 (757)
                      +++|++++..|..|.++++|                                          +.|++++|++++.+|..|
T Consensus       480 Ls~n~l~~~~~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~~~~~~~  517 (606)
T 3vq2_A          480 LSKCQLEQISWGVFDTLHRL------------------------------------------QLLNMSHNNLLFLDSSHY  517 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTC------------------------------------------CEEECCSSCCSCEEGGGT
T ss_pred             CCCCcCCccChhhhcccccC------------------------------------------CEEECCCCcCCCcCHHHc
Confidence            99999998888888776655                                          899999999999999999


Q ss_pred             cCCCCCCEEeCCCCCCCccCCcchhCCC-CCCEEeCCCCcCccCCC
Q 041016          650 GSLKGLKSLNLSYNQLQGNIPSTFGNLE-ILETLDLSHNSLSGKIP  694 (757)
Q Consensus       650 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p  694 (757)
                      +++++|++|++++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus       518 ~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          518 NQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             TTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            99999999999999999 5666688887 69999999999987554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.8e-56  Score=508.33  Aligned_cols=460  Identities=18%  Similarity=0.220  Sum_probs=271.3

Q ss_pred             CcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCccc---ceeeeCCCCCcccEEEEEcCCCCCCCCcceee
Q 041016           25 CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCRW---EMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSV  101 (757)
Q Consensus        25 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~w---~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~  101 (757)
                      ....|+.||.++|.++.++..  ...+..+....+|+.+++||.|   .||+|+.   .+||++++|++.     .+.|.
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w--~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~---~~~V~~L~L~~~-----~l~g~   96 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNW--SQQGFGTQPGANWNFNKELDMWGAQPGVSLNS---NGRVTGLSLEGF-----GASGR   96 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGC--CCCC------CCCCCSSCGGGTTCCTTEEECT---TCCEEEEECTTS-----CCEEE
T ss_pred             hHHHHHHHHHHHHHHcCCCCc--ccCCcCCccCCCCCCCCCcccccCCCCeEEcC---CCCEEEEEecCc-----ccCCc
Confidence            345799999999999874321  1111113345689988899999   9999986   389999999997     89999


Q ss_pred             ccccccCCCCCCEEeCCCCCC------CC------CCCccccCCCCCCCEEeCCCCcCCCCcCccccC-CCCCCEEEccC
Q 041016          102 VLAPIFRIRSLMTLDLSYNSM------QG------EVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN-LRYLEFLDLSA  168 (757)
Q Consensus       102 ~~~~l~~l~~L~~L~Ls~n~l------~~------~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~  168 (757)
                      +++.++++++|++|+|++|.+      .|      .+| ...  +.+|+ ++++.+.+.+.+|..+.. +..+..+++..
T Consensus        97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~-~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~  172 (636)
T 4eco_A           97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS-DEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQ  172 (636)
T ss_dssp             ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCC-HHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred             CChHHhcCccceEEECcCCccccCCccccccccccCch-HHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence            999999999999999999976      22      333 111  45566 777777777777666552 11222222221


Q ss_pred             CcCCCcccccccCCCCCCEEEcc--CccCCccCchhccCCCCCCEEEccccccccc-----------------cCcccc-
Q 041016          169 NAIEGKLSSRVAGLKNLKQLILD--DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG-----------------IPLSLL-  228 (757)
Q Consensus       169 n~l~~~~~~~~~~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~l~-  228 (757)
                      ..+..      .....++.+.+.  .|.+++ +|.+++++++|++|+|++|.+++.                 +|..++ 
T Consensus       173 ~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~  245 (636)
T 4eco_A          173 KSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW  245 (636)
T ss_dssp             CCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred             ccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence            11110      011122222222  355665 666666666666666666666654                 666666 


Q ss_pred             -CCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCC-CCC-ccchhhhcC------CCCCEEEccCCccccccch--
Q 041016          229 -QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA-LTG-AIPQSIRNM------TKLVTLRLDSNVLSGEIST--  297 (757)
Q Consensus       229 -~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~~~--  297 (757)
                       ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++++      ++|++|++++|.++ .+|.  
T Consensus       246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~  324 (636)
T 4eco_A          246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET  324 (636)
T ss_dssp             GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred             cccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence             67777777777777666667667777777777777776 666 666666655      67777777777776 5665  


Q ss_pred             hhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCc-c-
Q 041016          298 WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL-N-  375 (757)
Q Consensus       298 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-~-  375 (757)
                      .+..+++|++|++++|.++                        |.+| .+..+++|++|++++|+++ .+|..+..+ . 
T Consensus       325 ~l~~l~~L~~L~L~~N~l~------------------------g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~  378 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLE------------------------GKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQ  378 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCE------------------------EECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTT
T ss_pred             hhccCCCCCEEeCcCCcCc------------------------cchh-hhCCCCCCCEEECCCCccc-cccHhhhhhccc
Confidence            6667777777777666665                        3333 3444444444444444444 222222222 1 


Q ss_pred             ccEEEcCCCcCCCCCCCCccCC--CCCCEEeCcCccccccCCcccC-------CCCCccEEEccCCcccccChHhhhccC
Q 041016          376 LGTVILSDNMLTGSLPPPLFES--RNLSVLVLSRNNFSGELPETIG-------QSTSVMVLMLSSNNFSGHVPKSISNIY  446 (757)
Q Consensus       376 L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~l~~l~  446 (757)
                      |++|++++|+++ .+|..+...  ++|++|++++|.+++..|..+.       .+++|++|++++|.+++..+..+..++
T Consensus       379 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~  457 (636)
T 4eco_A          379 VENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS  457 (636)
T ss_dssp             CCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred             CcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence            333333333333 333333332  2566666666666666666555       556777777777777644444445566


Q ss_pred             CCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCc
Q 041016          447 RLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN  526 (757)
Q Consensus       447 ~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  526 (757)
                      +|++|++++|.++ .+|.                       ...             . ..+..+.++++|++|++++|+
T Consensus       458 ~L~~L~Ls~N~l~-~i~~-----------------------~~~-------------~-~~~~~~~~l~~L~~L~Ls~N~  499 (636)
T 4eco_A          458 PLSSINLMGNMLT-EIPK-----------------------NSL-------------K-DENENFKNTYLLTSIDLRFNK  499 (636)
T ss_dssp             CCSEEECCSSCCS-BCCS-----------------------SSS-------------E-ETTEECTTGGGCCEEECCSSC
T ss_pred             CCCEEECCCCCCC-CcCH-----------------------HHh-------------c-cccccccccCCccEEECcCCc
Confidence            6666666666554 2221                       000             0 000112334466666666666


Q ss_pred             ccCcchhhcc--CCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCC
Q 041016          527 LTGEFPAFLS--QLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNN  573 (757)
Q Consensus       527 l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n  573 (757)
                      ++ .+|..+.  .+++|++|++++|++++ +|..+..+++|++|++++|
T Consensus       500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          500 LT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             CC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred             CC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence            66 4555554  56666666666666665 5555666666666666555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.8e-54  Score=505.17  Aligned_cols=518  Identities=22%  Similarity=0.230  Sum_probs=352.3

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCc-CccccCCCCCCEEEccCCcCCCcccccccCCCCCC
Q 041016          108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSI-PSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLK  186 (757)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  186 (757)
                      -.+++++|||++|.+++..| ..|.++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+.+..|..|.++++|+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  100 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF  100 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred             CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence            34677888888888875555 67788888888888888655555 66778888888888888888777777888888888


Q ss_pred             EEEccCccCCccCchh--ccCCCCCCEEEccccccccccC-ccccCCCCCCEEEccCCcCcccCcccccCC--CCCCEEE
Q 041016          187 QLILDDNLIQGQIPAE--IGNLTNLHKLSLRQNKFSGGIP-LSLLQLRKLETLDLQRNSLSGEIPEDIGTL--ANITILA  261 (757)
Q Consensus       187 ~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~  261 (757)
                      +|+|++|.+++..|..  |+++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+  ++|+.|+
T Consensus       101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            8888888877655554  7778888888888887776544 467778888888888887777777777666  7777888


Q ss_pred             ccCCCCCCccchhhhcCCC------CCEEEccCCccccccchhhhcc---CCCcEEEccCCCCcCCCcccccCCccccee
Q 041016          262 LSNNALTGAIPQSIRNMTK------LVTLRLDSNVLSGEISTWLFDL---QGMKSLYLGGNKLKWNDNVSIVPKCMLTEL  332 (757)
Q Consensus       262 L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  332 (757)
                      +++|.+.+..|..++.+.+      |++|++++|.+++..+..+...   ..++.+.++.+....               
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~---------------  245 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA---------------  245 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC---------------
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc---------------
Confidence            8887777766666655544      7777777777766666555432   445556555433220               


Q ss_pred             ecCCccCccCcchhccCC--CCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCcc
Q 041016          333 SLRSCSVRGSIPLWLSTQ--TELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNN  409 (757)
Q Consensus       333 ~L~~~~~~~~~~~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~  409 (757)
                      .+..+.+.+..+..|..+  ++|+.|++++|.+.+..+..+..++ |+.|++++|++.+..|..+..+++|++|++++|.
T Consensus       246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence            011122222223333333  5666667666666655555555554 5555555555555555555555555555555555


Q ss_pred             ccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchh
Q 041016          410 FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF  489 (757)
Q Consensus       410 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  489 (757)
                      +++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++    +..+++                   
T Consensus       326 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----i~~~~~-------------------  382 (844)
T 3j0a_A          326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFIPS-------------------  382 (844)
T ss_dssp             CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC----CSSCCS-------------------
T ss_pred             CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc----ccCCCC-------------------
Confidence            555555555555555555555555554444445555555555555555442    111333                   


Q ss_pred             hhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcc-hhhccCCCCCCEEEccCCcCccccCc-ccCCCCCCCE
Q 041016          490 GVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEF-PAFLSQLSSLQVLNLRNTALEGSITD-GLSNLTSLQI  567 (757)
Q Consensus       490 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~  567 (757)
                         ++.+++++|+++. +|.   ...+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|++
T Consensus       383 ---L~~L~l~~N~l~~-l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~  455 (844)
T 3j0a_A          383 ---IPDIFLSGNKLVT-LPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ  455 (844)
T ss_dssp             ---CSEEEEESCCCCC-CCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCB
T ss_pred             ---cchhccCCCCccc-ccc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccc
Confidence               4455555555542 232   2457888888888887542 33456788999999999998865443 4566889999


Q ss_pred             EECcCCcccccCC-----cccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCC
Q 041016          568 LDLSNNNLLGKIP-----SSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS  642 (757)
Q Consensus       568 L~ls~n~l~~~~p-----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~  642 (757)
                      |++++|.+++..+     ..|.+                                          ++.|+.|+|++|+++
T Consensus       456 L~Ls~N~l~~~~~~~~~~~~~~~------------------------------------------l~~L~~L~Ls~N~l~  493 (844)
T 3j0a_A          456 LFLGENMLQLAWETELCWDVFEG------------------------------------------LSHLQVLYLNHNYLN  493 (844)
T ss_dssp             CEEESCCCSSSCCSCCCSSCSSC------------------------------------------BCCEECCCCCHHHHT
T ss_pred             ccCCCCccccccccccchhhhcC------------------------------------------cccccEEECCCCccc
Confidence            9999998863322     22322                                          455688999999999


Q ss_pred             CcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016          643 GEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP  718 (757)
Q Consensus       643 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  718 (757)
                      +..|..|.++++|++|+|++|++++.+|..+.  ++|+.|++++|++++.+|..|.   +|++|++++|++.+..+
T Consensus       494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE  564 (844)
T ss_dssp             TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred             ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence            99999999999999999999999988887776  8999999999999999998764   78999999999988665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.4e-53  Score=490.62  Aligned_cols=513  Identities=19%  Similarity=0.204  Sum_probs=334.0

Q ss_pred             CCCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCC-----CC--ccc------------ceeeeCCCCCcccE
Q 041016           23 LCCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSS-----DC--CRW------------EMVRCRSRGPSQEV   83 (757)
Q Consensus        23 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~~~v   83 (757)
                      +++..+|+.||++||+++.   + +           +|+.+.     +|  |.|            .||+|+.   .+||
T Consensus       264 ~~~~~~d~~ALl~~k~~l~---~-~-----------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~---~~~V  325 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALD---G-K-----------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN---NGRV  325 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTT---G-G-----------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT---TSCE
T ss_pred             cccchHHHHHHHHHHHHcC---C-C-----------CCCcCCCcccccCCccccccccccccccCcCceEecC---CCCE
Confidence            3456789999999999985   2 2           464332     55  999            9999986   5899


Q ss_pred             EEEEcCCCCCCCCcceeeccccccCCCCCCEEeC-CCCCCCCCCCccccCCCCCCCE-----E---------e-CCCCcC
Q 041016           84 TGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDL-SYNSMQGEVPGTGFANLTRLTY-----L---------D-LKDNNL  147 (757)
Q Consensus        84 ~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~~i~~~~~~~l~~L~~-----L---------~-Ls~n~l  147 (757)
                      ++|+|++.     .+.|.+|+.++++++|++|+| ++|.++|..|.........+..     +         + .....+
T Consensus       326 ~~L~Ls~~-----~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          326 TGLSLAGF-----GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             EEEECTTT-----CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             EEEECccC-----CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            99999997     899999999999999999999 8888877644111000000000     0         0 000000


Q ss_pred             CCCc-----------CccccCCCCCCEEEcc--CCcCCCcccccccCCCCCCEEEccCccCCc-----------------
Q 041016          148 NGSI-----------PSQLFNLRYLEFLDLS--ANAIEGKLSSRVAGLKNLKQLILDDNLIQG-----------------  197 (757)
Q Consensus       148 ~~~~-----------p~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------  197 (757)
                      .+.+           +........++.+.+.  .|.+++ +|..|.++++|++|+|++|.+++                 
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g  479 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ  479 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence            0000           0000111122222222  244444 45555555555555555555554                 


Q ss_pred             cCchhcc--CCCCCCEEEccccccccccCccccCCCCCCEEEccCCc-Ccc-cCcccccCCC-------CCCEEEccCCC
Q 041016          198 QIPAEIG--NLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS-LSG-EIPEDIGTLA-------NITILALSNNA  266 (757)
Q Consensus       198 ~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~  266 (757)
                      .+|..++  ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++       +|++|++++|.
T Consensus       480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            4777766  88888888888888877888888888888888888887 777 6776665554       88888888888


Q ss_pred             CCCccch--hhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016          267 LTGAIPQ--SIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP  344 (757)
Q Consensus       267 l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  344 (757)
                      ++ .+|.  .++++++|++|++++|.++ .+| .+..+++|+.|++++|.++                         .+|
T Consensus       560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-------------------------~lp  611 (876)
T 4ecn_A          560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-------------------------EIP  611 (876)
T ss_dssp             CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-------------------------CCC
T ss_pred             CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-------------------------cch
Confidence            88 6777  7888888888888888887 666 6777777888877777765                         456


Q ss_pred             hhccCCCC-CCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcc---cC-
Q 041016          345 LWLSTQTE-LTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPET---IG-  419 (757)
Q Consensus       345 ~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~---~~-  419 (757)
                      .++..+++ |+.|++++|+++ .+|..+....                     .++|+.|++++|.+.+.+|..   +. 
T Consensus       612 ~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~---------------------~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          612 EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS---------------------VYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             TTSCEECTTCCEEECCSSCCC-SCCSCCCTTC---------------------SSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             HHHhhccccCCEEECcCCCCC-cCchhhhccc---------------------cCCCCEEECcCCcCCCccccchhhhcc
Confidence            66777777 888888888777 4444333221                     122455555555554433321   11 


Q ss_pred             -CCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEE
Q 041016          420 -QSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLS  497 (757)
Q Consensus       420 -~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  497 (757)
                       .+++|+.|++++|.++...+..+..+++|+.|++++|.++ .+| ....                              
T Consensus       670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~------------------------------  718 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLK------------------------------  718 (876)
T ss_dssp             CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSS------------------------------
T ss_pred             ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhc------------------------------
Confidence             2457888888888887444444457778888877777765 332 1110                              


Q ss_pred             ccCCccccccchhccCCCCCCEEeCcCCcccCcchhhcc--CCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcc
Q 041016          498 LSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLS--QLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL  575 (757)
Q Consensus       498 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l  575 (757)
                              ..+..+.++++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|++++|+ 
T Consensus       719 --------~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-  787 (876)
T 4ecn_A          719 --------PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-  787 (876)
T ss_dssp             --------CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-
T ss_pred             --------cccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-
Confidence                    00011334557778888888777 5666665  77778888888877776 67677777777777777764 


Q ss_pred             cccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCC
Q 041016          576 LGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGL  655 (757)
Q Consensus       576 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L  655 (757)
                                                                                 ++++|++.+.+|..|.++++|
T Consensus       788 -----------------------------------------------------------~ls~N~l~~~ip~~l~~L~~L  808 (876)
T 4ecn_A          788 -----------------------------------------------------------DAEGNRILRQWPTGITTCPSL  808 (876)
T ss_dssp             -----------------------------------------------------------CTTCCBCCCCCCTTGGGCSSC
T ss_pred             -----------------------------------------------------------CcccccccccChHHHhcCCCC
Confidence                                                                       245666667777777777777


Q ss_pred             CEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcc
Q 041016          656 KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL  713 (757)
Q Consensus       656 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  713 (757)
                      ++|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.+.+|++
T Consensus       809 ~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          809 IQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT  863 (876)
T ss_dssp             CEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred             CEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence            7777777777 56666554  5777777777777766665555555555555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2e-52  Score=493.95  Aligned_cols=538  Identities=19%  Similarity=0.183  Sum_probs=392.9

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcc-cccccCCCCCCEEEcc
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL-SSRVAGLKNLKQLILD  191 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~  191 (757)
                      +..|.++++++ .+| .   -.++|++|+|++|.+++..|..|.++++|++|+|++|...+.+ |..|.++++|++|+|+
T Consensus         7 ~~~dcs~~~L~-~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLT-QVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSS-CCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCC-CCC-C---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            45677888887 677 3   4578899999999988888888889999999999888655444 7778888888888888


Q ss_pred             CccCCccCchhccCCCCCCEEEccccccccccCcc--ccCCCCCCEEEccCCcCcccCc-ccccCCCCCCEEEccCCCCC
Q 041016          192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLS--LLQLRKLETLDLQRNSLSGEIP-EDIGTLANITILALSNNALT  268 (757)
Q Consensus       192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~  268 (757)
                      +|.+++..|.+|+++++|++|+|++|.+++.+|..  +.++++|++|++++|.+++..+ ..|+++++|++|++++|.++
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            88888888888888888888888888888766554  7888888888888888876544 46788888888888888888


Q ss_pred             CccchhhhcC--CCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchh
Q 041016          269 GAIPQSIRNM--TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW  346 (757)
Q Consensus       269 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  346 (757)
                      +..+..+..+  ++|+.|++++|.+.+..+..+..+++                  ......|++|++++|.+.+..+..
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~------------------~~~~~~L~~L~Ls~n~l~~~~~~~  223 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN------------------PFRNMVLEILDVSGNGWTVDITGN  223 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC------------------TTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhhcCC------------------ccccCceeEEecCCCcCchhHHHH
Confidence            7777777766  77888888888777666554444333                  000112444444444444555554


Q ss_pred             ccC---CCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccC--CCCCCEEeCcCccccccCCcccCCC
Q 041016          347 LST---QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFE--SRNLSVLVLSRNNFSGELPETIGQS  421 (757)
Q Consensus       347 l~~---~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--~~~L~~L~L~~n~l~~~~~~~~~~~  421 (757)
                      +..   ...++.+.++.+......              ..+.+.+..+..+..  .++|+.|++++|.+.+..+..+..+
T Consensus       224 ~~~~l~~~~l~~L~l~~~~~~~~~--------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l  289 (844)
T 3j0a_A          224 FSNAISKSQAFSLILAHHIMGAGF--------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL  289 (844)
T ss_dssp             GGGTSCSCCBSEEECCSSCCBCSS--------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred             HHhhcCcccccceecccccccccc--------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence            443   256777777644332111              111222122222222  2567777777777776666667777


Q ss_pred             CCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhh--cccEEEc
Q 041016          422 TSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGV--TILMLSL  498 (757)
Q Consensus       422 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~l  498 (757)
                      ++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+ .+..+++|++|++++|++.+..+..+..  .++.|++
T Consensus       290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  369 (844)
T 3j0a_A          290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL  369 (844)
T ss_dssp             CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred             CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence            777777777777776666677777777777777777766555 6667777777777777776666555543  3777777


Q ss_pred             cCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEECcCCcccc
Q 041016          499 SENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT-DGLSNLTSLQILDLSNNNLLG  577 (757)
Q Consensus       499 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~  577 (757)
                      ++|.+++.     ..+++|+.|++++|+++ .+|..   ..+++.|++++|++.+... ..+..+++|++|++++|++++
T Consensus       370 s~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  440 (844)
T 3j0a_A          370 RDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS  440 (844)
T ss_dssp             ETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred             CCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence            77777643     23789999999999998 45543   5689999999999986432 345689999999999999986


Q ss_pred             cCCcc-cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCC-----CcCCccccC
Q 041016          578 KIPSS-FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS-----GEIPSSLGS  651 (757)
Q Consensus       578 ~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~-----~~~p~~l~~  651 (757)
                      ..+.. +..                                          ++.|+.|++++|.++     +..+..|.+
T Consensus       441 ~~~~~~~~~------------------------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  478 (844)
T 3j0a_A          441 CSGDQTPSE------------------------------------------NPSLEQLFLGENMLQLAWETELCWDVFEG  478 (844)
T ss_dssp             CCSSSSSCS------------------------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSC
T ss_pred             ccccccccc------------------------------------------CCccccccCCCCccccccccccchhhhcC
Confidence            44331 111                                          455689999999997     445567899


Q ss_pred             CCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCcc
Q 041016          652 LKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVI  731 (757)
Q Consensus       652 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~  731 (757)
                      +++|++|+|++|++++.+|..|.++++|++|+|++|++++..|..+.  ++|++|++++|+++|.+|..  +.++.... 
T Consensus       479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~-  553 (844)
T 3j0a_A          479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLD-  553 (844)
T ss_dssp             BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEE-
T ss_pred             cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEE-
Confidence            99999999999999999999999999999999999999998887776  89999999999999999965  55666666 


Q ss_pred             ccCCCCCCCCCC
Q 041016          732 YANNSGLCGMQI  743 (757)
Q Consensus       732 ~~gn~~lc~~~l  743 (757)
                      +.|||..|.+++
T Consensus       554 l~~Np~~C~c~~  565 (844)
T 3j0a_A          554 ITHNKFICECEL  565 (844)
T ss_dssp             EEEECCCCSSSC
T ss_pred             ecCCCccccccc
Confidence            899999996653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-51  Score=464.33  Aligned_cols=501  Identities=22%  Similarity=0.272  Sum_probs=328.7

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016          111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL  190 (757)
Q Consensus       111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  190 (757)
                      ++++|++++|.+++..+ .+|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++
T Consensus        29 ~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            45666666666553322 45566666666666666665554555556666666666666655555555555666666666


Q ss_pred             cCccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCC----CEEEccCC
Q 041016          191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI----TILALSNN  265 (757)
Q Consensus       191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L~~n  265 (757)
                      ++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|    +.+++++|
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            6665554443345555555555555555554 245555555555555555555555544555544444    45555555


Q ss_pred             CCCCccchhhhcCCCCCEEEccCCccc-cccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016          266 ALTGAIPQSIRNMTKLVTLRLDSNVLS-GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP  344 (757)
Q Consensus       266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  344 (757)
                      .+.+..+..+... +|++|++++|... ..++..+..+++++...+....+..                           
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~---------------------------  239 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN---------------------------  239 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC---------------------------
T ss_pred             CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC---------------------------
Confidence            5554444444433 4555555544322 1223333444444433332211110                           


Q ss_pred             hhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCC-cCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCC
Q 041016          345 LWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDN-MLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS  423 (757)
Q Consensus       345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  423 (757)
                           ..+++  .+     .......+..+.++.+++.++ .+.+..|..+..+++|++|++++|.++ .+|..+..+ +
T Consensus       240 -----~~~l~--~~-----~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~  305 (570)
T 2z63_A          240 -----EGNLE--KF-----DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G  305 (570)
T ss_dssp             -----CSSCE--EC-----CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C
T ss_pred             -----chhhh--hc-----chhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C
Confidence                 00000  00     000001112223555555555 555566667777778888888887776 466666666 7


Q ss_pred             ccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcc
Q 041016          424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKF  503 (757)
Q Consensus       424 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l  503 (757)
                      |++|++++|.+. .+|.  ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.                   
T Consensus       306 L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~-------------------  362 (570)
T 2z63_A          306 WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFK-------------------  362 (570)
T ss_dssp             CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEE-------------------
T ss_pred             ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcc-------------------
Confidence            888888887776 3333  3567777777777776655444 4556666666665554421                   


Q ss_pred             ccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEECcCCcccccCCcc
Q 041016          504 SGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT-DGLSNLTSLQILDLSNNNLLGKIPSS  582 (757)
Q Consensus       504 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~p~~  582 (757)
                       +..+..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..
T Consensus       363 -~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  440 (570)
T 2z63_A          363 -GCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI  440 (570)
T ss_dssp             -EEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             -ccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence             11256788899999999999998865554 8889999999999999987766 57889999999999999998888877


Q ss_pred             cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCC-CcCCccccCCCCCCEEeCC
Q 041016          583 FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLS-GEIPSSLGSLKGLKSLNLS  661 (757)
Q Consensus       583 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls  661 (757)
                      +.++++|                                          +.|++++|.++ +.+|..+..+++|++|+++
T Consensus       441 ~~~l~~L------------------------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~  478 (570)
T 2z63_A          441 FNGLSSL------------------------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLS  478 (570)
T ss_dssp             TTTCTTC------------------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             hhcCCcC------------------------------------------cEEECcCCcCccccchhhhhcccCCCEEECC
Confidence            7666555                                          88999999997 5789999999999999999


Q ss_pred             CCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCC
Q 041016          662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP  721 (757)
Q Consensus       662 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~  721 (757)
                      +|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|+++|.+|...
T Consensus       479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            999999999999999999999999999999999999999999999999999999998653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1e-49  Score=452.87  Aligned_cols=498  Identities=23%  Similarity=0.273  Sum_probs=387.8

Q ss_pred             CcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCC
Q 041016           79 PSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNL  158 (757)
Q Consensus        79 ~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l  158 (757)
                      ...+++.+++++.     .+.+..+..|.++++|++|++++|.+++..+ .+|+++++|++|+|++|.+++..|..|+++
T Consensus        26 l~~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           26 LPFSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             SCSSCCEEECCSC-----CCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             ccccccEEEccCC-----ccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            3567899999987     7777777899999999999999999985444 889999999999999999998888999999


Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCc-cCchhccCCCCCCEEEccccccccccCccccCCCCC----
Q 041016          159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL----  233 (757)
Q Consensus       159 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----  233 (757)
                      ++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..|+++++|++|++++|.+++..+..++.+++|    
T Consensus       100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~  179 (570)
T 2z63_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  179 (570)
T ss_dssp             TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred             cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence            999999999999998877789999999999999999987 479999999999999999999998888888888888    


Q ss_pred             CEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC-ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccC
Q 041016          234 ETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGG  312 (757)
Q Consensus       234 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  312 (757)
                      ++|++++|.+++..+..+... +|+.|++++|.... .++..+..++.++...+....+..        ...++.  +. 
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~~--~~-  247 (570)
T 2z63_A          180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLEK--FD-  247 (570)
T ss_dssp             CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCEE--CC-
T ss_pred             hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhhh--cc-
Confidence            899999999998888777766 89999999986443 456778888888877665433221        111111  11 


Q ss_pred             CCCcCCCcccccCC--cccceeecCCc-cCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCC
Q 041016          313 NKLKWNDNVSIVPK--CMLTELSLRSC-SVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGS  389 (757)
Q Consensus       313 n~l~~~~~~~~~~~--~~L~~L~L~~~-~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~  389 (757)
                             ...+...  ..++.+++.++ .+.+..|.++..+++|+.|++++|.+. .+|.++....|++|++++|.+. .
T Consensus       248 -------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~-~  318 (570)
T 2z63_A          248 -------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG-Q  318 (570)
T ss_dssp             -------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCS-S
T ss_pred             -------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCccc-c
Confidence                   1111111  12555666665 555677888888899999999988887 3555555556777777777766 4


Q ss_pred             CCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccC--hHhhhccCCCCEEEccCCcccccCCCCCC
Q 041016          390 LPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHV--PKSISNIYRLLVLDLSNNSFSGEFPAFGS  467 (757)
Q Consensus       390 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~~~~~~  467 (757)
                      +|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+       
T Consensus       319 l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------  387 (570)
T 2z63_A          319 FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-------  387 (570)
T ss_dssp             CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------
T ss_pred             cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------
Confidence            443  3566777777777776655443  45667777777777666443  5556666666666555554431       


Q ss_pred             CCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcch-hhccCCCCCCEEEc
Q 041016          468 DSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNL  546 (757)
Q Consensus       468 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L  546 (757)
                                                            . +..+..+++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus       388 --------------------------------------~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          388 --------------------------------------M-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             --------------------------------------E-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             --------------------------------------c-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence                                                  2 2236677888888888888876655 46778888888888


Q ss_pred             cCCcCccccCcccCCCCCCCEEECcCCccc-ccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccc
Q 041016          547 RNTALEGSITDGLSNLTSLQILDLSNNNLL-GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS  625 (757)
Q Consensus       547 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  625 (757)
                      ++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|                                    
T Consensus       429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L------------------------------------  472 (570)
T 2z63_A          429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------------------------------  472 (570)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC------------------------------------
T ss_pred             cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC------------------------------------
Confidence            888888888888888889999999999887 5677776665544                                    


Q ss_pred             ccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCC
Q 041016          626 KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQ  695 (757)
Q Consensus       626 ~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  695 (757)
                            +.|++++|++++..|..|..+++|++|++++|++++.+|..|.++++|++|++++|++++..|.
T Consensus       473 ------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          473 ------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             ------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             ------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence                  8899999999988888999999999999999999998888899999999999999999987764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.4e-49  Score=447.35  Aligned_cols=477  Identities=22%  Similarity=0.231  Sum_probs=319.4

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      ++|++|++++|.+++..| ..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..+..|+++++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            678888888888875555 6788888888888888888877777888888888888888888877777788888888888


Q ss_pred             ccCccCCc-cCchhccCCCCCCEEEccccccccccC-ccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016          190 LDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIP-LSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL  267 (757)
Q Consensus       190 L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  267 (757)
                      +++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            88888775 345677888888888888887443443 5677777888888888877777777777777777777777776


Q ss_pred             CCccchhhhcCCCCCEEEccCCcccccc--c-hhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016          268 TGAIPQSIRNMTKLVTLRLDSNVLSGEI--S-TWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP  344 (757)
Q Consensus       268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  344 (757)
                      .......+..+++|++|++++|.+++..  + .....+++|+.|++++|.++....                    ..++
T Consensus       185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------------------~~l~  244 (549)
T 2z81_A          185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF--------------------NELL  244 (549)
T ss_dssp             TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH--------------------HHHH
T ss_pred             cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH--------------------HHHH
Confidence            5332222345667777777777665431  1 111223445555554444331000                    0122


Q ss_pred             hhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccC-----CcccC
Q 041016          345 LWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGEL-----PETIG  419 (757)
Q Consensus       345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-----~~~~~  419 (757)
                      ..+..+++|+.+++++|.+.+.....                 ......+..+++++.|++.++.+....     +..+.
T Consensus       245 ~~~~~~~~L~~l~l~~~~~~~~~~~~-----------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~  307 (549)
T 2z81_A          245 KLLRYILELSEVEFDDCTLNGLGDFN-----------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS  307 (549)
T ss_dssp             GGGGGCTTCCEEEEESCEEECCSCCC-----------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred             HHhhhhcccccccccccccccccccc-----------------ccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence            33455667777777777665431100                 001122334556666666666543211     00111


Q ss_pred             CCCCccEEEccCCcccccChHhh-hccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEc
Q 041016          420 QSTSVMVLMLSSNNFSGHVPKSI-SNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSL  498 (757)
Q Consensus       420 ~~~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l  498 (757)
                      ..++|++|++++|.+. .+|..+ ..+++|++|++++|.+++.+                       |.           
T Consensus       308 ~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~-----------------------~~-----------  352 (549)
T 2z81_A          308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEY-----------------------LK-----------  352 (549)
T ss_dssp             HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHH-----------------------HH-----------
T ss_pred             hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccc-----------------------cc-----------
Confidence            1234455555555444 233222 33444444444444333211                       10           


Q ss_pred             cCCccccccchhccCCCCCCEEeCcCCcccCcch--hhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCccc
Q 041016          499 SENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP--AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL  576 (757)
Q Consensus       499 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  576 (757)
                              .+..+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++
T Consensus       353 --------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          353 --------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             --------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred             --------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence                    01235677888888888888875433  45778888888888888887 57777888888999999998876


Q ss_pred             ccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCC
Q 041016          577 GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLK  656 (757)
Q Consensus       577 ~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~  656 (757)
                      + +|..+                                            ++.|+.||+++|++++.+    ..+++|+
T Consensus       424 ~-l~~~~--------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~  454 (549)
T 2z81_A          424 V-VKTCI--------------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQ  454 (549)
T ss_dssp             C-CCTTS--------------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred             c-ccchh--------------------------------------------cCCceEEECCCCChhhhc----ccCChhc
Confidence            3 22211                                            234588999999998653    5789999


Q ss_pred             EEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016          657 SLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE  719 (757)
Q Consensus       657 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  719 (757)
                      +|+|++|+++ .+|. ...+++|++|++++|++++.+|+.+..+++|++|++++|++++..|.
T Consensus       455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            9999999998 5665 56789999999999999999999999999999999999999998884

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=3.6e-48  Score=442.45  Aligned_cols=465  Identities=20%  Similarity=0.287  Sum_probs=306.4

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCC------C------CcCccccCCCCCCEEEccCCcCCCcccc
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLN------G------SIPSQLFNLRYLEFLDLSANAIEGKLSS  177 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~------~------~~p~~l~~l~~L~~L~Ls~n~l~~~~~~  177 (757)
                      .+++.|+|+++.+.|.+| .+++++++|++|+|++|.+.      +      .+|...  +..|+ ++++++.+.+..+.
T Consensus        81 ~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence            478889999999999998 78999999999999999762      2      333333  44555 66777766666665


Q ss_pred             cccCC-CCCCEEEccCccCCccCchhccCCCCCCEEEcc--ccccccccCccccCCCCCCEEEccCCcCccc--------
Q 041016          178 RVAGL-KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLR--QNKFSGGIPLSLLQLRKLETLDLQRNSLSGE--------  246 (757)
Q Consensus       178 ~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~--~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--------  246 (757)
                      .+..+ .++..+++....+.      ......++.+.+.  .|++++ +|..++++++|++|++++|.+++.        
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~  229 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN  229 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred             hHHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence            54321 11222222221111      1112233333333  578888 899999999999999999999985        


Q ss_pred             ---------Cccccc--CCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCc-ccc-ccchhhhcc------CCCcE
Q 041016          247 ---------IPEDIG--TLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV-LSG-EISTWLFDL------QGMKS  307 (757)
Q Consensus       247 ---------~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~  307 (757)
                               +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+      ++|++
T Consensus       230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~  309 (636)
T 4eco_A          230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI  309 (636)
T ss_dssp             TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred             cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence                     899988  99999999999999999999999999999999999998 888 888888776      77777


Q ss_pred             EEccCCCCcCCCcccccCCcccceeecCCccCccCcch--hccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCC
Q 041016          308 LYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL--WLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDN  384 (757)
Q Consensus       308 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n  384 (757)
                      |++++|.++                         .+|.  .++.+++|++|++++|++.|.+| .+..++ |++|++++|
T Consensus       310 L~L~~n~l~-------------------------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          310 IYIGYNNLK-------------------------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             EECCSSCCS-------------------------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred             EECCCCcCC-------------------------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence            777777665                         5677  88999999999999999998887 666665 777777777


Q ss_pred             cCCCCCCCCccCCCC-CCEEeCcCccccccCCcccCCCC--CccEEEccCCcccccChHhhhccCCCCEEEccCCccccc
Q 041016          385 MLTGSLPPPLFESRN-LSVLVLSRNNFSGELPETIGQST--SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGE  461 (757)
Q Consensus       385 ~l~~~~~~~l~~~~~-L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~  461 (757)
                      +++ .+|..+..+++ |++|++++|.++ .+|..+...+  +|++|++++|.+++.+|..+..+.               
T Consensus       364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~---------------  426 (636)
T 4eco_A          364 QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD---------------  426 (636)
T ss_dssp             EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC---------------
T ss_pred             ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc---------------
Confidence            777 66666777776 777777777776 5565555433  566666666666655554433100               


Q ss_pred             CCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchh-hccCCCC
Q 041016          462 FPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA-FLSQLSS  540 (757)
Q Consensus       462 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~  540 (757)
                       .....+++|++|++++|+++                      +..+..+..+++|++|++++|+++ .+|. .+.... 
T Consensus       427 -~~~~~~~~L~~L~Ls~N~l~----------------------~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~-  481 (636)
T 4eco_A          427 -PTPFKGINVSSINLSNNQIS----------------------KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN-  481 (636)
T ss_dssp             -SSCCCCCCEEEEECCSSCCC----------------------SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT-
T ss_pred             -cccccCCCCCEEECcCCccC----------------------cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc-
Confidence             00002223333333333322                      122223444566666666666665 3332 222111 


Q ss_pred             CCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccc--cccccccCCCCCCCCCcccCCccccceeEeeecc
Q 041016          541 LQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG--NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKN  618 (757)
Q Consensus       541 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  618 (757)
                                      ..+.++++|++|++++|+++ .+|..+.  .+                                
T Consensus       482 ----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l--------------------------------  512 (636)
T 4eco_A          482 ----------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL--------------------------------  512 (636)
T ss_dssp             ----------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTC--------------------------------
T ss_pred             ----------------ccccccCCccEEECcCCcCC-ccChhhhhccC--------------------------------
Confidence                            00111224555555555554 3333332  22                                


Q ss_pred             CccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeC------CCCCCCccCCcchhCCCCCCEEeCCCCcCccC
Q 041016          619 SKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNL------SYNQLQGNIPSTFGNLEILETLDLSHNSLSGK  692 (757)
Q Consensus       619 ~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  692 (757)
                                +.|+.|+|++|++++ +|..+.++++|++|+|      ++|++.+.+|..|..+++|++|+|++|++ +.
T Consensus       513 ----------~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~  580 (636)
T 4eco_A          513 ----------PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RK  580 (636)
T ss_dssp             ----------TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CB
T ss_pred             ----------CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Cc
Confidence                      222555555555554 5555556666666666      66788888888888899999999999998 56


Q ss_pred             CCCCccCCCCCCEEeCCCCcceec
Q 041016          693 IPQTFAKLQQLTSLYLSNNKLSGR  716 (757)
Q Consensus       693 ~p~~l~~l~~L~~L~ls~N~l~g~  716 (757)
                      +|..+.  ++|++|++++|++...
T Consensus       581 ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          581 VNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCSCCC--TTCCEEECCSCTTCEE
T ss_pred             cCHhHh--CcCCEEECcCCCCccc
Confidence            777665  7899999999987653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=6.1e-47  Score=427.73  Aligned_cols=501  Identities=20%  Similarity=0.193  Sum_probs=357.1

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +...+.|.+++.++ .+| ..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|+
T Consensus         5 ~~~~~c~~~~~~l~-~ip-~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   80 (549)
T 2z81_A            5 DASGVCDGRSRSFT-SIP-SGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD   80 (549)
T ss_dssp             CTTSEEECTTSCCS-SCC-SCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCceEECCCCccc-ccc-ccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence            44455788888887 777 3333  7899999999999988888899999999999999999988888899999999999


Q ss_pred             ccCccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccC-cccccCCCCCCEEEccCCCC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEI-PEDIGTLANITILALSNNAL  267 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l  267 (757)
                      +++|.+++..|..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+ +..+..+++|++|++++|.+
T Consensus        81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            99999988777779999999999999999876 35677888899999999988844444 45788888888888888888


Q ss_pred             CCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhc
Q 041016          268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL  347 (757)
Q Consensus       268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l  347 (757)
                      ++..|..++++++|++|++++|.+.......+..+++|++|++++|.++....                     ......
T Consensus       161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------~~~~~~  219 (549)
T 2z81_A          161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF---------------------SPLPVD  219 (549)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCC---------------------CCCSSC
T ss_pred             cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccc---------------------cccchh
Confidence            88888888888888888888887753333333457777788777777662110                     001122


Q ss_pred             cCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEE
Q 041016          348 STQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVL  427 (757)
Q Consensus       348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  427 (757)
                      ..+++|+.|++++|.+.+..+..+.                   ..+..+++|+.+++++|.+.+......         
T Consensus       220 ~~~~~L~~L~l~~n~l~~~~~~~l~-------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~---------  271 (549)
T 2z81_A          220 EVSSPMKKLAFRGSVLTDESFNELL-------------------KLLRYILELSEVEFDDCTLNGLGDFNP---------  271 (549)
T ss_dssp             CCCCCCCEEEEESCEEEHHHHHHHH-------------------GGGGGCTTCCEEEEESCEEECCSCCCC---------
T ss_pred             hhhhcccceeccccccchhHHHHHH-------------------HHhhhhccccccccccccccccccccc---------
Confidence            3456777777777777654443221                   122334556666666665543211000         


Q ss_pred             EccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcccccc
Q 041016          428 MLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQL  507 (757)
Q Consensus       428 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~  507 (757)
                               .....+..+.+|+.+++.++.+.... .+...+.+               ......++.+++++|.+. .+
T Consensus       272 ---------~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~~---------------~~~~~~L~~L~l~~n~l~-~i  325 (549)
T 2z81_A          272 ---------SESDVVSELGKVETVTIRRLHIPQFY-LFYDLSTV---------------YSLLEKVKRITVENSKVF-LV  325 (549)
T ss_dssp             ---------CTTTCCCCCTTCCEEEEESCBCSCGG-GSCCCCHH---------------HHHSTTCCEEEEESSCCC-CC
T ss_pred             ---------cchhhhhhhcccccccccccccchhh-hcccchhh---------------hhhcccceEEEeccCccc-cC
Confidence                     00011223344445544444332110 00000000               001112455556666654 44


Q ss_pred             chhc-cCCCCCCEEeCcCCcccCcchh---hccCCCCCCEEEccCCcCccccC--cccCCCCCCCEEECcCCcccccCCc
Q 041016          508 PQNL-SNLSLLQHLDLHDNNLTGEFPA---FLSQLSSLQVLNLRNTALEGSIT--DGLSNLTSLQILDLSNNNLLGKIPS  581 (757)
Q Consensus       508 ~~~~-~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~ls~n~l~~~~p~  581 (757)
                      |..+ .++++|++|++++|++++.+|.   .++.+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|.
T Consensus       326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~  404 (549)
T 2z81_A          326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPD  404 (549)
T ss_dssp             CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCS
T ss_pred             CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCCh
Confidence            5444 6799999999999999987753   47889999999999999986543  56889999999999999998 5676


Q ss_pred             ccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCC
Q 041016          582 SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS  661 (757)
Q Consensus       582 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  661 (757)
                      .+..++                                          .|+.|++++|+++ .+|..+  .++|++|+++
T Consensus       405 ~~~~~~------------------------------------------~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls  439 (549)
T 2z81_A          405 SCQWPE------------------------------------------KMRFLNLSSTGIR-VVKTCI--PQTLEVLDVS  439 (549)
T ss_dssp             CCCCCT------------------------------------------TCCEEECTTSCCS-CCCTTS--CTTCSEEECC
T ss_pred             hhcccc------------------------------------------cccEEECCCCCcc-cccchh--cCCceEEECC
Confidence            655444                                          4489999999998 444443  2689999999


Q ss_pred             CCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCC-CCCCCCCCCccccCCCCCCC
Q 041016          662 YNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES-PQMDRQIDPVIYANNSGLCG  740 (757)
Q Consensus       662 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~gn~~lc~  740 (757)
                      +|++++.+    ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|.. ..+..+.... +.||+..|.
T Consensus       440 ~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-l~~N~~~~~  512 (549)
T 2z81_A          440 NNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW-LHTNPWDCS  512 (549)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEE-CCSSCBCCC
T ss_pred             CCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEE-ecCCCccCC
Confidence            99999763    57899999999999999 5665 567999999999999999988763 4455555556 899999998


Q ss_pred             CC
Q 041016          741 MQ  742 (757)
Q Consensus       741 ~~  742 (757)
                      ++
T Consensus       513 ~~  514 (549)
T 2z81_A          513 CP  514 (549)
T ss_dssp             HH
T ss_pred             Cc
Confidence            65

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=9.8e-46  Score=426.02  Aligned_cols=517  Identities=23%  Similarity=0.249  Sum_probs=373.6

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +++++|||++|.|+ .+|..+|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            47899999999998 45557899999999999999999977778899999999999999999988888899999999999


Q ss_pred             ccCccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCC----CEEEccC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI----TILALSN  264 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L~~  264 (757)
                      +++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+.++    ..++++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence            99999997777789999999999999999875 357788889999999999999988888777655443    4678888


Q ss_pred             CCCCCccchhhhcCCCCCEEEccCCcccc-ccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCc
Q 041016          265 NALTGAIPQSIRNMTKLVTLRLDSNVLSG-EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSI  343 (757)
Q Consensus       265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~  343 (757)
                      |.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+.......                  +....
T Consensus       211 n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~------------------l~~~~  271 (635)
T 4g8a_A          211 NPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN------------------LEKFD  271 (635)
T ss_dssp             CCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC------------------CSCCC
T ss_pred             CcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc------------------ccccc
Confidence            88875444433 34456777887776543 234456667777666554433221100                  00111


Q ss_pred             chhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCC
Q 041016          344 PLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS  423 (757)
Q Consensus       344 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  423 (757)
                      ...+.....+...++..+.......                    ..+..+....+++.+++.++.+....  .+.....
T Consensus       272 ~~~~~~~~~l~~~~l~~~~~~~~~~--------------------~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~  329 (635)
T 4g8a_A          272 KSALEGLCNLTIEEFRLAYLDYYLD--------------------GIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFG  329 (635)
T ss_dssp             TTTTGGGGGSEEEEEEEECCCSCEE--------------------ECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCC
T ss_pred             ccccccccchhhhhhhhhhhccccc--------------------chhhhhhhhccccccccccccccccc--ccccchh
Confidence            2222333333333333322221111                    11122223345555555555544322  2333445


Q ss_pred             ccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccC--CCchhhh--cccEEEcc
Q 041016          424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE--VPSSFGV--TILMLSLS  499 (757)
Q Consensus       424 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~--~l~~L~l~  499 (757)
                      ++.|++.+|.+.+..+.   .+..|+.+++..|..... +....+++|+.+++++|.+...  .+..+..  .++.+++.
T Consensus       330 L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~  405 (635)
T 4g8a_A          330 WQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS  405 (635)
T ss_dssp             CSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECC
T ss_pred             hhhhhcccccccCcCcc---cchhhhhcccccccCCCC-cccccccccccchhhccccccccccccchhhhhhhhhhhcc
Confidence            56666666655433322   344556666666655422 2334456666666666666432  2333222  26777777


Q ss_pred             CCccccccchhccCCCCCCEEeCcCCcccCcch-hhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCccc-c
Q 041016          500 ENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL-G  577 (757)
Q Consensus       500 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~-~  577 (757)
                      .+.... .+..+..+++|+.+++++|+.....+ ..+..+.+++.++++.|.+.+..+..+..+++|++|++++|.+. +
T Consensus       406 ~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~  484 (635)
T 4g8a_A          406 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  484 (635)
T ss_dssp             SCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             cccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc
Confidence            777664 34567889999999999988765544 46788999999999999999999999999999999999999754 4


Q ss_pred             cCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCE
Q 041016          578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKS  657 (757)
Q Consensus       578 ~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~  657 (757)
                      ..|..|..+++|                                          +.|||++|++++..|..|+++++|++
T Consensus       485 ~~~~~~~~l~~L------------------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          485 FLPDIFTELRNL------------------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             EECSCCTTCTTC------------------------------------------CEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCchhhhhcccc------------------------------------------CEEECCCCccCCcChHHHcCCCCCCE
Confidence            566666665544                                          89999999999999999999999999


Q ss_pred             EeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCC-CCCCEEeCCCCccee
Q 041016          658 LNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKL-QQLTSLYLSNNKLSG  715 (757)
Q Consensus       658 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g  715 (757)
                      |+|++|++++.+|..|.++++|++|||++|++++..|+.|..+ ++|++|++++|++.+
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            9999999999999999999999999999999999999999988 689999999999986

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-46  Score=418.94  Aligned_cols=454  Identities=22%  Similarity=0.217  Sum_probs=337.5

Q ss_pred             CEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCC
Q 041016          162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN  241 (757)
Q Consensus       162 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  241 (757)
                      ++||+++|.++. +|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            467777777774 444443  67777777777777666667777777777777777777666777777777777777777


Q ss_pred             cCcccCcccccCCCCCCEEEccCCCCCC-ccchhhhcCCCCCEEEccCCccccccchhhhccCCC--cEEEccCCCCcCC
Q 041016          242 SLSGEIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGM--KSLYLGGNKLKWN  318 (757)
Q Consensus       242 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l~~~  318 (757)
                      .++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+.. 
T Consensus        80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~-  152 (520)
T 2z7x_B           80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG-  152 (520)
T ss_dssp             CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-
T ss_pred             cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-
Confidence            776 34444  66677777777777665 355666666666666666666553   233444444  555555444410 


Q ss_pred             CcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCC-CccCC
Q 041016          319 DNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPP-PLFES  397 (757)
Q Consensus       319 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~  397 (757)
                                           .+..|..+..+.. +                     ...+++++|.+.+.++. .+..+
T Consensus       153 ---------------------~~~~~~~l~~l~~-~---------------------~l~l~l~~n~~~~~~~~~~~~~l  189 (520)
T 2z7x_B          153 ---------------------EKEDPEGLQDFNT-E---------------------SLHIVFPTNKEFHFILDVSVKTV  189 (520)
T ss_dssp             ---------------------SSCCTTTTTTCCE-E---------------------EEEEECCSSSCCCCCCCCCCTTC
T ss_pred             ---------------------ccccccccccccc-c---------------------eEEEEeccCcchhhhhhhhhhcc
Confidence                                 1334444433321 1                     22334445554444433 45567


Q ss_pred             CCCCEEeCcCcc-------ccccCCcccCCCCCccEEEccCCcccccChHhhh---ccCCCCEEEccCCcccccCC-CC-
Q 041016          398 RNLSVLVLSRNN-------FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSIS---NIYRLLVLDLSNNSFSGEFP-AF-  465 (757)
Q Consensus       398 ~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~ls~n~l~~~~~-~~-  465 (757)
                      ++|+.+++++|.       +.+.++ .+..+++|+.|++++|.+++..+..+.   ..++|++|++++|.+++.+| .+ 
T Consensus       190 ~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~  268 (520)
T 2z7x_B          190 ANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF  268 (520)
T ss_dssp             SEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred             cceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchh
Confidence            889999999887       666665 688899999999999988765443332   24699999999999998888 55 


Q ss_pred             ----CCCCcccEEECcCCccccCCC-chhhh-----cccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhc
Q 041016          466 ----GSDSLVGHVDISSNRFSGEVP-SSFGV-----TILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFL  535 (757)
Q Consensus       466 ----~~~~~L~~L~l~~n~l~~~~~-~~~~~-----~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l  535 (757)
                          ..++.|+.+++++|.+  .+| ..+..     .++.|++++|.+....  .+..+++|++|++++|++++..|..+
T Consensus       269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~  344 (520)
T 2z7x_B          269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC  344 (520)
T ss_dssp             CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence                8899999999999999  555 34433     2999999999987543  13689999999999999999899999


Q ss_pred             cCCCCCCEEEccCCcCcc--ccCcccCCCCCCCEEECcCCcccccCCcc-cccccccccCCCCCCCCCcccCCcccccee
Q 041016          536 SQLSSLQVLNLRNTALEG--SITDGLSNLTSLQILDLSNNNLLGKIPSS-FGNLQGMIDTPSILPTLPEIFSFPVEIQDL  612 (757)
Q Consensus       536 ~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l  612 (757)
                      ..+++|++|++++|++++  .+|..+..+++|++|++++|++++.+|.. +..+                          
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l--------------------------  398 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT--------------------------  398 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC--------------------------
T ss_pred             ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC--------------------------
Confidence            999999999999999997  56678999999999999999998756643 4333                          


Q ss_pred             EeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccC
Q 041016          613 IVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGK  692 (757)
Q Consensus       613 ~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  692 (757)
                                      +.|+.|++++|++++.+|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus       399 ----------------~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l  459 (520)
T 2z7x_B          399 ----------------KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV  459 (520)
T ss_dssp             ----------------TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             ----------------ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc
Confidence                            4459999999999988887765  79999999999999 7788778999999999999999965


Q ss_pred             CCCCccCCCCCCEEeCCCCcceecCC
Q 041016          693 IPQTFAKLQQLTSLYLSNNKLSGRIP  718 (757)
Q Consensus       693 ~p~~l~~l~~L~~L~ls~N~l~g~iP  718 (757)
                      .+..+..+++|++|++++|++++..|
T Consensus       460 ~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          460 PDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CHHHhccCCcccEEECcCCCCcccCC
Confidence            44459999999999999999998665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-46  Score=418.97  Aligned_cols=464  Identities=20%  Similarity=0.209  Sum_probs=340.8

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      ++||+++|.++ .+| ..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            57888888887 677 4344  7888888888888877777888888888888888888887788888888888888888


Q ss_pred             ccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCC--CEEEccCCCC--
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI--TILALSNNAL--  267 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--  267 (757)
                      |.++ .+|..  .+++|++|++++|.+++ .+|..++++++|++|++++|.+++   ..+..+++|  ++|++++|.+  
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence            8887 45554  78888888888888876 467778888888888888888765   345666666  7888888777  


Q ss_pred             CCccchhhhcCC-CCCEEEccCCccccccch-hhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016          268 TGAIPQSIRNMT-KLVTLRLDSNVLSGEIST-WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL  345 (757)
Q Consensus       268 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  345 (757)
                      .+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|......                 ..+.+.+| 
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----------------~~~~~~~~-  214 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC-----------------SYFLSILA-  214 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT-----------------HHHHHHHH-
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc-----------------ceeecchh-
Confidence            666666665554 222445555555443332 2334444444444444310000                 00334444 


Q ss_pred             hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCccc-----CC
Q 041016          346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETI-----GQ  420 (757)
Q Consensus       346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-----~~  420 (757)
                      .+..+++|+.|++++|.+.+..+..+.                   .. ...++|++|++++|.+++.+|..+     ..
T Consensus       215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~-------------------~~-~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~  274 (520)
T 2z7x_B          215 KLQTNPKLSNLTLNNIETTWNSFIRIL-------------------QL-VWHTTVWYFSISNVKLQGQLDFRDFDYSGTS  274 (520)
T ss_dssp             GGGGCTTCCEEEEEEEEEEHHHHHHHH-------------------HH-HHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred             hhccccchhhccccccccCHHHHHHHH-------------------HH-hhhCcccEEEeecccccCccccchhhccccc
Confidence            678888888888888877654322111                   00 113478888888888887777777     78


Q ss_pred             CCCccEEEccCCcccccCh-Hhhhcc---CCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEE
Q 041016          421 STSVMVLMLSSNNFSGHVP-KSISNI---YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILML  496 (757)
Q Consensus       421 ~~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L  496 (757)
                      +++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+... +....+++|++|++++|+                
T Consensus       275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~----------------  335 (520)
T 2z7x_B          275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-LCPSKISPFLHLDFSNNL----------------  335 (520)
T ss_dssp             CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-CCCSSCCCCCEEECCSSC----------------
T ss_pred             CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-cchhhCCcccEEEeECCc----------------
Confidence            89999999999988  344 556555   6799999999887532 222455566555555554                


Q ss_pred             EccCCccccccchhccCCCCCCEEeCcCCcccC--cchhhccCCCCCCEEEccCCcCccccCc-ccCCCCCCCEEECcCC
Q 041016          497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG--EFPAFLSQLSSLQVLNLRNTALEGSITD-GLSNLTSLQILDLSNN  573 (757)
Q Consensus       497 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n  573 (757)
                            +++..|..+.++++|++|++++|++++  .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|
T Consensus       336 ------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N  409 (520)
T 2z7x_B          336 ------LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN  409 (520)
T ss_dssp             ------CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred             ------cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence                  445566778889999999999999986  5678899999999999999999985664 5889999999999999


Q ss_pred             cccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCC
Q 041016          574 NLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLK  653 (757)
Q Consensus       574 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~  653 (757)
                      ++++.+|..+.                                            +.|+.||+++|+++ .+|..+..++
T Consensus       410 ~l~~~~~~~l~--------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~  444 (520)
T 2z7x_B          410 ILTDTIFRCLP--------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLE  444 (520)
T ss_dssp             CCCGGGGGSCC--------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred             CCCcchhhhhc--------------------------------------------ccCCEEECCCCccc-ccchhhhcCC
Confidence            99877665432                                            34589999999999 8888888999


Q ss_pred             CCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCC
Q 041016          654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP  694 (757)
Q Consensus       654 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  694 (757)
                      +|++|++++|++++..+..|..+++|++|++++|++++..+
T Consensus       445 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence            99999999999996544459999999999999999987543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.9e-45  Score=424.35  Aligned_cols=442  Identities=19%  Similarity=0.247  Sum_probs=236.9

Q ss_pred             CCCCEEeCCCCcCCCCcCccccCCCCCCEEEc-cCCcCCCcccccccCC-CCCCE-----EE----------ccCccCCc
Q 041016          135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDL-SANAIEGKLSSRVAGL-KNLKQ-----LI----------LDDNLIQG  197 (757)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~~~~~~~l-~~L~~-----L~----------L~~n~l~~  197 (757)
                      .+++.|+|+++.+.|.+|++|++|++|++|+| ++|.+.|..+...... ..+..     +.          .....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46788888888888888888888888888888 7776655422111000 00000     00          00000000


Q ss_pred             cCch-----------hccCCCCCCEEEccc--cccccccCccccCCCCCCEEEccCCcCcc-----------------cC
Q 041016          198 QIPA-----------EIGNLTNLHKLSLRQ--NKFSGGIPLSLLQLRKLETLDLQRNSLSG-----------------EI  247 (757)
Q Consensus       198 ~~p~-----------~~~~l~~L~~L~L~~--n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------~~  247 (757)
                      ..+.           .......++.+.+..  |.+++ +|..++++++|++|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence            0000           011122233333333  56665 66666666677777777666666                 36


Q ss_pred             ccccc--CCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCc-ccc-ccchhhhccC-------CCcEEEccCCCCc
Q 041016          248 PEDIG--TLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV-LSG-EISTWLFDLQ-------GMKSLYLGGNKLK  316 (757)
Q Consensus       248 ~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~  316 (757)
                      |..++  ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|..+..++       +|++|++++|.++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            66655  67777777777777666667667777777777777776 665 5666555443       3444444333332


Q ss_pred             CCCcccccCCcccceeecCCccCccCcch--hccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCC
Q 041016          317 WNDNVSIVPKCMLTELSLRSCSVRGSIPL--WLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPP  393 (757)
Q Consensus       317 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~  393 (757)
                                               .+|.  .+..+++|+.|++++|+++ .+| .+..++ |+.|++++|++. .+|..
T Consensus       562 -------------------------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~  613 (876)
T 4ecn_A          562 -------------------------EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPED  613 (876)
T ss_dssp             -------------------------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTT
T ss_pred             -------------------------ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHH
Confidence                                     3444  4555555555555555554 333 222222 333333333333 23333


Q ss_pred             ccCCCC-CCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCccc
Q 041016          394 LFESRN-LSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVG  472 (757)
Q Consensus       394 l~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~  472 (757)
                      +..+++ |+.|++++|.++ .+|..+...+.                                             ++|+
T Consensus       614 l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~---------------------------------------------~~L~  647 (876)
T 4ecn_A          614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV---------------------------------------------YVMG  647 (876)
T ss_dssp             SCEECTTCCEEECCSSCCC-SCCSCCCTTCS---------------------------------------------SCEE
T ss_pred             HhhccccCCEEECcCCCCC-cCchhhhcccc---------------------------------------------CCCC
Confidence            333333 333333333333 22222222111                                             1134


Q ss_pred             EEECcCCccccCCCchhhhcccEEEccCCccccccchhcc--CCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCc
Q 041016          473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLS--NLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA  550 (757)
Q Consensus       473 ~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  550 (757)
                      .|++++|++.+.+|...                   ..+.  .+++|+.|++++|.++...+..+..+++|++|+|++|+
T Consensus       648 ~L~Ls~N~l~g~ip~l~-------------------~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          648 SVDFSYNKIGSEGRNIS-------------------CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             EEECCSSCTTTTSSSCS-------------------SCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             EEECcCCcCCCccccch-------------------hhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            44444444333222100                   0001  12344555555555542222223345555555555555


Q ss_pred             CccccCcccC--------CCCCCCEEECcCCcccccCCcccc--cccccccCCCCCCCCCcccCCccccceeEeeeccCc
Q 041016          551 LEGSITDGLS--------NLTSLQILDLSNNNLLGKIPSSFG--NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSK  620 (757)
Q Consensus       551 l~~~~~~~l~--------~l~~L~~L~ls~n~l~~~~p~~~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  620 (757)
                      +. .+|..+.        ++++|++|+|++|+++ .+|..+.  .+                                  
T Consensus       709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l----------------------------------  752 (876)
T 4ecn_A          709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL----------------------------------  752 (876)
T ss_dssp             CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC----------------------------------
T ss_pred             CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC----------------------------------
Confidence            54 2332221        2236666666666665 4454433  22                                  


Q ss_pred             cccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCC------CCCCccCCcchhCCCCCCEEeCCCCcCccCCC
Q 041016          621 RGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSY------NQLQGNIPSTFGNLEILETLDLSHNSLSGKIP  694 (757)
Q Consensus       621 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  694 (757)
                              +.|+.|+|++|++++ +|..+..+++|+.|+|++      |++.+.+|..|.++++|++|+|++|++ +.+|
T Consensus       753 --------~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip  822 (876)
T 4ecn_A          753 --------PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD  822 (876)
T ss_dssp             --------TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             --------CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence                    333666666666665 566666777777777755      889999999999999999999999999 6888


Q ss_pred             CCccCCCCCCEEeCCCCcceecCC
Q 041016          695 QTFAKLQQLTSLYLSNNKLSGRIP  718 (757)
Q Consensus       695 ~~l~~l~~L~~L~ls~N~l~g~iP  718 (757)
                      ..+.  ++|+.|||++|++...-+
T Consensus       823 ~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          823 EKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             SCCC--SSSCEEECCSCTTCEEEC
T ss_pred             Hhhc--CCCCEEECCCCCCCccCh
Confidence            8765  699999999999976544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.4e-43  Score=406.06  Aligned_cols=524  Identities=22%  Similarity=0.221  Sum_probs=394.7

Q ss_pred             eeeeCCCC-------CcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCC
Q 041016           71 MVRCRSRG-------PSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLK  143 (757)
Q Consensus        71 gv~c~~~~-------~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  143 (757)
                      .|.|..++       .+..++.|||++.     .+.+..+.+|.++++|++|||++|.+++ ++..+|+++++|++|+|+
T Consensus        35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N-----~i~~l~~~~f~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLPFSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred             EEECCCCCcCccCCCCCcCCCEEEeeCC-----CCCCCCHHHHhCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEcc
Confidence            46786543       3457899999987     7777777899999999999999999984 554889999999999999


Q ss_pred             CCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCc-cCchhccCCCCCCEEEccccccccc
Q 041016          144 DNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGG  222 (757)
Q Consensus       144 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~  222 (757)
                      +|.+++..+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++.
T Consensus       109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            999997777789999999999999999999888889999999999999999976 4688899999999999999999988


Q ss_pred             cCccccCCCCC----CEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC-ccchhhhcCCCCCEEEccCCcc------
Q 041016          223 IPLSLLQLRKL----ETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDSNVL------  291 (757)
Q Consensus       223 ~~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l------  291 (757)
                      .+..+..+.++    ..++++.|.++...+.. .....++.+++.+|.... ..+..+..+..++...+..+..      
T Consensus       189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  267 (635)
T 4g8a_A          189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  267 (635)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             ccccccchhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence            88887765544    47899999998655544 444567888998887653 3345677788887776643322      


Q ss_pred             ccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccc
Q 041016          292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWL  371 (757)
Q Consensus       292 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  371 (757)
                      .......+.....+....+..+......                     ...+..+..+.+++.+++.++.+....+  +
T Consensus       268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~  324 (635)
T 4g8a_A          268 EKFDKSALEGLCNLTIEEFRLAYLDYYL---------------------DGIIDLFNCLTNVSSFSLVSVTIERVKD--F  324 (635)
T ss_dssp             SCCCTTTTGGGGGSEEEEEEEECCCSCE---------------------EECTTTTGGGTTCSEEEEESCEEEECGG--G
T ss_pred             ccccccccccccchhhhhhhhhhhcccc---------------------cchhhhhhhhcccccccccccccccccc--c
Confidence            2222233344444444444433222110                     1122334455666677766666553322  2


Q ss_pred             cCc-cccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCccc--ccChHhhhccCCC
Q 041016          372 SEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFS--GHVPKSISNIYRL  448 (757)
Q Consensus       372 ~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L  448 (757)
                      ... .++.+++.+|.+.+..+.   .++.|+.+++..|......  ....+++|+.+++++|.+.  +..+..+..+.+|
T Consensus       325 ~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L  399 (635)
T 4g8a_A          325 SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL  399 (635)
T ss_dssp             GSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred             ccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhh
Confidence            222 366677777666543332   3567888888888775433  3446788999999998775  4456777788899


Q ss_pred             CEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCccc
Q 041016          449 LVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT  528 (757)
Q Consensus       449 ~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  528 (757)
                      +.+++..|......+.+..++.|+.++++.+......+                     +..|..+++++.++++.|.+.
T Consensus       400 ~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------------------~~~~~~l~~l~~l~ls~n~l~  458 (635)
T 4g8a_A          400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE---------------------FSVFLSLRNLIYLDISHTHTR  458 (635)
T ss_dssp             CEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS---------------------SCTTTTCTTCCEEECTTSCCE
T ss_pred             hhhhccccccccccccccccccccchhhhhcccccccc---------------------ccccccccccccccccccccc
Confidence            99999999888776678888888888888776654322                     245667888888888888888


Q ss_pred             CcchhhccCCCCCCEEEccCCcCc-cccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCcc
Q 041016          529 GEFPAFLSQLSSLQVLNLRNTALE-GSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPV  607 (757)
Q Consensus       529 ~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~  607 (757)
                      +..+..+..+++|++|++++|.+. +..|..|..+++|++|++++|++++..|..|.++++|                  
T Consensus       459 ~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L------------------  520 (635)
T 4g8a_A          459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL------------------  520 (635)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC------------------
T ss_pred             cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC------------------
Confidence            888888888888888888888744 4567788888888888888888888888877766655                  


Q ss_pred             ccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC-CCCCEEeCCC
Q 041016          608 EIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL-EILETLDLSH  686 (757)
Q Consensus       608 ~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~  686 (757)
                                              +.|+|++|+|++..|..|.++++|++|+|++|++++.+|+.|..+ ++|++|+|++
T Consensus       521 ------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          521 ------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             ------------------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             ------------------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence                                    788888888888888888888999999999999998888888887 6899999999


Q ss_pred             CcCccC
Q 041016          687 NSLSGK  692 (757)
Q Consensus       687 N~l~~~  692 (757)
                      |++...
T Consensus       577 Np~~C~  582 (635)
T 4g8a_A          577 NDFACT  582 (635)
T ss_dssp             CCBCCS
T ss_pred             CCCccc
Confidence            888753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.8e-44  Score=402.98  Aligned_cols=463  Identities=21%  Similarity=0.222  Sum_probs=265.5

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      +++|+++|.++ .+| ..+.  ++|++|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++
T Consensus        34 ~~l~ls~~~L~-~ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           34 SMVDYSNRNLT-HVP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CEEECTTSCCC-SCC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             cEEEcCCCCCc-cCC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            55666666665 355 2222  5666777777766655556666666677777776666666666666666666666666


Q ss_pred             ccCCccCchhccCCCCCCEEEcccccccc-ccCccccCCCCCCEEEccCCcCcccCcccccCCCCC--CEEEccCCCC--
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSG-GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI--TILALSNNAL--  267 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--  267 (757)
                      |.++ .+|..  .+++|++|++++|.+++ .+|..|+++++|++|++++|.+++.   .+..+++|  ++|++++|.+  
T Consensus       110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred             CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence            6666 34444  56667777777666664 2345666666666666666666542   23333444  6666666666  


Q ss_pred             CCccchhhhcCC-CCCEEEccCCccccccch-hhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016          268 TGAIPQSIRNMT-KLVTLRLDSNVLSGEIST-WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL  345 (757)
Q Consensus       268 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  345 (757)
                      ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.....                   .+ .....
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l-~~~~~  243 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RL-MTFLS  243 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HH-HHHHH
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hH-HHHHH
Confidence            555555555443 111334555554443322 233445555555555431100                   00 01223


Q ss_pred             hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCccc-----CC
Q 041016          346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETI-----GQ  420 (757)
Q Consensus       346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-----~~  420 (757)
                      .+..+++|+.++++++.+.+.....+                   +.. ...++|++|++++|.+++.+|..+     ..
T Consensus       244 ~l~~l~~L~~L~L~~~~l~~~~~~~~-------------------~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~  303 (562)
T 3a79_B          244 ELTRGPTLLNVTLQHIETTWKCSVKL-------------------FQF-FWPRPVEYLNIYNLTITERIDREEFTYSETA  303 (562)
T ss_dssp             HHHSCSSCEEEEEEEEEECHHHHHHH-------------------HHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCS
T ss_pred             HHhccCcceEEEecCCcCcHHHHHHH-------------------HHh-hhcccccEEEEeccEeeccccchhhhccccc
Confidence            45666677777766665543211100                   000 012355556666666555555544     45


Q ss_pred             CCCccEEEccCCcccccCh-Hhhhcc---CCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEE
Q 041016          421 STSVMVLMLSSNNFSGHVP-KSISNI---YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILML  496 (757)
Q Consensus       421 ~~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L  496 (757)
                      ++.|+.+++..+.+  .+| ..+..+   .+|+.|++++|.+... +.                                
T Consensus       304 L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~-~~--------------------------------  348 (562)
T 3a79_B          304 LKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHM-VC--------------------------------  348 (562)
T ss_dssp             CCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCC-CC--------------------------------
T ss_pred             chheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccc-cC--------------------------------
Confidence            55666666666655  233 333222   4566666666554310 00                                


Q ss_pred             EccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcc--ccCcccCCCCCCCEEECcCCc
Q 041016          497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG--SITDGLSNLTSLQILDLSNNN  574 (757)
Q Consensus       497 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~  574 (757)
                                    ...+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+..+++|++|++++|+
T Consensus       349 --------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          349 --------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             --------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             --------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence                          1345566666666666665556666666666666666666654  223456666666666666666


Q ss_pred             ccccCCcc-cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCC
Q 041016          575 LLGKIPSS-FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLK  653 (757)
Q Consensus       575 l~~~~p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~  653 (757)
                      +++.+|.. +..+                                          +.|+.|++++|++++.+|..+.  +
T Consensus       415 l~~~~~~~~~~~l------------------------------------------~~L~~L~l~~n~l~~~~~~~l~--~  450 (562)
T 3a79_B          415 LNSHAYDRTCAWA------------------------------------------ESILVLNLSSNMLTGSVFRCLP--P  450 (562)
T ss_dssp             CBSCCSSCCCCCC------------------------------------------TTCCEEECCSSCCCGGGGSSCC--T
T ss_pred             CCCccChhhhcCc------------------------------------------ccCCEEECCCCCCCcchhhhhc--C
Confidence            66544432 2222                                          3336667777777666555443  5


Q ss_pred             CCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016          654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE  719 (757)
Q Consensus       654 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  719 (757)
                      +|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|.
T Consensus       451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  515 (562)
T 3a79_B          451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  515 (562)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred             cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence            7888888888887 5565556888888888888888854444478888888888888888876653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-41  Score=383.76  Aligned_cols=451  Identities=22%  Similarity=0.235  Sum_probs=348.4

Q ss_pred             EEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCE
Q 041016           84 TGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEF  163 (757)
Q Consensus        84 ~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  163 (757)
                      +.+++++.     .+.+ +|..+.  ++|++|++++|.+++..+ ..|.++++|++|+|++|.+++..|.+|.++++|++
T Consensus        34 ~~l~ls~~-----~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           34 SMVDYSNR-----NLTH-VPKDLP--PRTKALSLSQNSISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             CEEECTTS-----CCCS-CCTTSC--TTCCEEECCSSCCCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cEEEcCCC-----CCcc-CCCCCC--CCcCEEECCCCCccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            56778775     4443 555443  899999999999985444 88999999999999999999888999999999999


Q ss_pred             EEccCCcCCCcccccccCCCCCCEEEccCccCCc-cCchhccCCCCCCEEEccccccccccCccccCCCCC--CEEEccC
Q 041016          164 LDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL--ETLDLQR  240 (757)
Q Consensus       164 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~  240 (757)
                      |++++|.++. +|..  .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++.   .+..+++|  ++|++++
T Consensus       105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            9999999994 4544  89999999999999987 3568999999999999999999863   45555666  9999999


Q ss_pred             CcC--cccCcccccCCC--CCCEEEccCCCCCCccc-hhhhcCCCCCEEEccCCc-----cccccchhhhccCCCcEEEc
Q 041016          241 NSL--SGEIPEDIGTLA--NITILALSNNALTGAIP-QSIRNMTKLVTLRLDSNV-----LSGEISTWLFDLQGMKSLYL  310 (757)
Q Consensus       241 n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~-----l~~~~~~~l~~l~~L~~L~L  310 (757)
                      |.+  ++..|..+..+.  .+ .+++++|.+.+.++ ..+.++++|+.+++++|.     +.+ ....+..+++|+.+++
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L  256 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTL  256 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEE
T ss_pred             ccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEe
Confidence            999  888888887765  33 56888888877554 346678899999999985     222 2345778899999999


Q ss_pred             cCCCCcCCCcccc---cCCcccceeecCCccCccCcchhc-----cCCCCCCEEEccCCcccCccc-ccc----cCcccc
Q 041016          311 GGNKLKWNDNVSI---VPKCMLTELSLRSCSVRGSIPLWL-----STQTELTFLDLSENELEGTYP-QWL----SELNLG  377 (757)
Q Consensus       311 ~~n~l~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~~----~~~~L~  377 (757)
                      .++.+.......+   .....|++|++++|.+.+.+|.++     ..++.|+.+++..+.+  .+| .++    ....++
T Consensus       257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred             cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence            8887663221111   223479999999999988888877     6677777777777766  334 222    233488


Q ss_pred             EEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCccccc--ChHhhhccCCCCEEEccC
Q 041016          378 TVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH--VPKSISNIYRLLVLDLSN  455 (757)
Q Consensus       378 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~  455 (757)
                      ++++++|.+....  ....+++|++|++++|.+++..|..+..+++|++|++++|++++.  +|..+.++++|++|++++
T Consensus       335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            8999998876332  125678899999999998888888888888999999999988863  356678888888888888


Q ss_pred             CcccccCC--CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchh
Q 041016          456 NSFSGEFP--AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPA  533 (757)
Q Consensus       456 n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  533 (757)
                      |.+++.+|  .+..+++|++|++++|++++                      ..|..+.  ++|++|++++|+++ .+|.
T Consensus       413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~l~--~~L~~L~L~~N~l~-~ip~  467 (562)
T 3a79_B          413 NSLNSHAYDRTCAWAESILVLNLSSNMLTG----------------------SVFRCLP--PKVKVLDLHNNRIM-SIPK  467 (562)
T ss_dssp             SCCBSCCSSCCCCCCTTCCEEECCSSCCCG----------------------GGGSSCC--TTCSEEECCSSCCC-CCCT
T ss_pred             CcCCCccChhhhcCcccCCEEECCCCCCCc----------------------chhhhhc--CcCCEEECCCCcCc-ccCh
Confidence            88887555  46677777777777766654                      3333322  68889999999888 5666


Q ss_pred             hccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCC
Q 041016          534 FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIP  580 (757)
Q Consensus       534 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  580 (757)
                      .+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus       468 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            66688999999999999985333448889999999999999886554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2e-41  Score=352.10  Aligned_cols=295  Identities=29%  Similarity=0.470  Sum_probs=265.8

Q ss_pred             CCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCcc--cceeeeCCCCCcccEEEEEcCCCCCCCCccee-
Q 041016           24 CCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCR--WEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTS-  100 (757)
Q Consensus        24 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~-  100 (757)
                      .|.++|++||++||+++.   + +      . .+.+|..+++||.  |.||+|+.....++|+.++|++.     .+.| 
T Consensus         2 ~c~~~~~~aL~~~k~~~~---~-~------~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-----~l~~~   65 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG---N-P------T-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-----NLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT---C-C------G-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-----CCSSC
T ss_pred             CCCHHHHHHHHHHHHhcC---C-c------c-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-----CccCC
Confidence            589999999999999985   2 3      2 4678988789998  99999986433389999999987     7778 


Q ss_pred             -eccccccCCCCCCEEeCCC-CCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccc
Q 041016          101 -VVLAPIFRIRSLMTLDLSY-NSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSR  178 (757)
Q Consensus       101 -~~~~~l~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  178 (757)
                       .++..+.++++|++|++++ |.+.+.+| ..|+++++|++|++++|.+++.+|..++++++|++|++++|.+.+..|..
T Consensus        66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  144 (313)
T 1ogq_A           66 YPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             cccChhHhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence             8899999999999999995 99998898 78999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEEccCccCCccCchhccCCC-CCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCC
Q 041016          179 VAGLKNLKQLILDDNLIQGQIPAEIGNLT-NLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI  257 (757)
Q Consensus       179 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  257 (757)
                      +.++++|++|++++|.+++.+|..+.+++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|
T Consensus       145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L  223 (313)
T 1ogq_A          145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred             HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCC
Confidence            99999999999999999999999999998 999999999999999999999987 9999999999999999999999999


Q ss_pred             CEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCc
Q 041016          258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSC  337 (757)
Q Consensus       258 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~  337 (757)
                      ++|++++|.+++..|. +..+++|++|++++|.+++.+|.++..+++|++|++++|+++                     
T Consensus       224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~---------------------  281 (313)
T 1ogq_A          224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC---------------------  281 (313)
T ss_dssp             SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE---------------------
T ss_pred             CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc---------------------
Confidence            9999999999876665 888999999999999999999999999999999999999887                     


Q ss_pred             cCccCcchhccCCCCCCEEEccCCc
Q 041016          338 SVRGSIPLWLSTQTELTFLDLSENE  362 (757)
Q Consensus       338 ~~~~~~~~~l~~~~~L~~L~l~~n~  362 (757)
                         +.+|.. ..+++|+.+++++|.
T Consensus       282 ---~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          282 ---GEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             ---EECCCS-TTGGGSCGGGTCSSS
T ss_pred             ---ccCCCC-ccccccChHHhcCCC
Confidence               556654 667777777777776

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-39  Score=358.52  Aligned_cols=373  Identities=21%  Similarity=0.211  Sum_probs=188.1

Q ss_pred             CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcc-cccccCCCCCCEEEccCccCCccCchhccCCCCCCEEE
Q 041016          135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL-SSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS  213 (757)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  213 (757)
                      ++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            44455555555554444444445555555555554443222 33344445555555555554444444455555555555


Q ss_pred             ccccccccccCcc--ccCCCCCCEEEccCCcCcccCccc-ccCCCCCCEEEccCCCCCCccchhhhcC--CCCCEEEccC
Q 041016          214 LRQNKFSGGIPLS--LLQLRKLETLDLQRNSLSGEIPED-IGTLANITILALSNNALTGAIPQSIRNM--TKLVTLRLDS  288 (757)
Q Consensus       214 L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~  288 (757)
                      +++|.+++..+..  +.++++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            5555544433222  444455555555555544443433 4444445555555544444444444333  3344444444


Q ss_pred             CccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCC---CCCCEEEccCCcccC
Q 041016          289 NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ---TELTFLDLSENELEG  365 (757)
Q Consensus       289 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~---~~L~~L~l~~n~l~~  365 (757)
                      |.+.+..+..+..                .....+.....|++|++++|.+.+..|..+...   ++|+.|++++|...+
T Consensus       190 n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  253 (455)
T 3v47_A          190 ITLQDMNEYWLGW----------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG  253 (455)
T ss_dssp             CBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred             Ccccccchhhccc----------------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence            4443222211100                000000111122222222222223333333222   445555555444332


Q ss_pred             cccccccCccccEEEcCCCcCCCCCCCCcc--CCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhh
Q 041016          366 TYPQWLSELNLGTVILSDNMLTGSLPPPLF--ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSIS  443 (757)
Q Consensus       366 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  443 (757)
                      ...             ..+.+.+..+..+.  ..++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|.
T Consensus       254 ~~~-------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  320 (455)
T 3v47_A          254 SSF-------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW  320 (455)
T ss_dssp             CCT-------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             ccc-------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence            210             00111111111111  123455555555555544444444445555555555544444444444


Q ss_pred             ccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCc
Q 041016          444 NIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLH  523 (757)
Q Consensus       444 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  523 (757)
                                             .+++|++|++++|++                      ++..|..|.++++|++|+++
T Consensus       321 -----------------------~l~~L~~L~Ls~N~l----------------------~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          321 -----------------------GLTHLLKLNLSQNFL----------------------GSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             -----------------------TCTTCCEEECCSSCC----------------------CEECGGGGTTCTTCCEEECC
T ss_pred             -----------------------CcccCCEEECCCCcc----------------------CCcChhHhcCcccCCEEECC
Confidence                                   444444444444433                      23445677888999999999


Q ss_pred             CCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCc
Q 041016          524 DNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPS  581 (757)
Q Consensus       524 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~  581 (757)
                      +|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            9999988888899999999999999999987777889999999999999999988773

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.3e-39  Score=355.43  Aligned_cols=393  Identities=22%  Similarity=0.235  Sum_probs=267.7

Q ss_pred             CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccC-cccccCCCCCCEEEccC
Q 041016          186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEI-PEDIGTLANITILALSN  264 (757)
Q Consensus       186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~  264 (757)
                      +.++.+++.++ .+|. +.  ++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus        13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            46777777776 4555 32  67889999999888777888888888999999888886544 56688888888888888


Q ss_pred             CCCCCccchhhhcCCCCCEEEccCCccccccchh--hhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccC
Q 041016          265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTW--LFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS  342 (757)
Q Consensus       265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~  342 (757)
                      |.+++..|..|+++++|++|++++|.+++..+..  +..+++|++|++++|.++                        +.
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~~  144 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK------------------------KI  144 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCC------------------------SC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccC------------------------cc
Confidence            8888777888888888888888888887655544  667777777777777665                        55


Q ss_pred             cchh-ccCCCCCCEEEccCCcccCcccccccCc---cccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCccc
Q 041016          343 IPLW-LSTQTELTFLDLSENELEGTYPQWLSEL---NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETI  418 (757)
Q Consensus       343 ~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~  418 (757)
                      .|.. +..+++|++|++++|++.+..+..+..+   .++.+++++|.+.+..+..+.                ......+
T Consensus       145 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~  208 (455)
T 3v47_A          145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNP  208 (455)
T ss_dssp             CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCT
T ss_pred             CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcc----------------ccccccc
Confidence            5554 7888889999998888887777665543   255555555554432221110                0001123


Q ss_pred             CCCCCccEEEccCCcccccChHhhhcc---CCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccE
Q 041016          419 GQSTSVMVLMLSSNNFSGHVPKSISNI---YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILM  495 (757)
Q Consensus       419 ~~~~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~  495 (757)
                      ..+++|++|++++|.+++..|..+...   ++|+.|++++|...+....                               
T Consensus       209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------------------------------  257 (455)
T 3v47_A          209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-------------------------------  257 (455)
T ss_dssp             TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-------------------------------
T ss_pred             cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-------------------------------
Confidence            456788899999998888888777665   5666666666554321110                               


Q ss_pred             EEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcc
Q 041016          496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNL  575 (757)
Q Consensus       496 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l  575 (757)
                          .+.+.+..+..+..+                      ..++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       258 ----~~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  311 (455)
T 3v47_A          258 ----HTNFKDPDNFTFKGL----------------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI  311 (455)
T ss_dssp             ----CCSSCCCCTTTTGGG----------------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ----hhhhccCcccccccc----------------------cccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence                011111111111111                      123455555555555554555555555555555555555


Q ss_pred             cccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCC
Q 041016          576 LGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGL  655 (757)
Q Consensus       576 ~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L  655 (757)
                      ++..|..|.++++|                                          +.|++++|++++..|..|+++++|
T Consensus       312 ~~~~~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          312 NKIDDNAFWGLTHL------------------------------------------LKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             CEECTTTTTTCTTC------------------------------------------CEEECCSSCCCEECGGGGTTCTTC
T ss_pred             cccChhHhcCcccC------------------------------------------CEEECCCCccCCcChhHhcCcccC
Confidence            55555444443333                                          556666666666667778888899


Q ss_pred             CEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCC
Q 041016          656 KSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESP  721 (757)
Q Consensus       656 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~  721 (757)
                      ++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|++++.+|...
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  415 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  415 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence            999999999998888889999999999999999998777788889999999999999999888643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.9e-40  Score=360.49  Aligned_cols=424  Identities=21%  Similarity=0.262  Sum_probs=194.2

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016          106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL  185 (757)
Q Consensus       106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  185 (757)
                      -.+.++|++|++++|.+ |.+| .+++++++|++|++++|.++|.+|..++++++|++++++.|..           .++
T Consensus         7 ~~~~~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l   73 (454)
T 1jl5_A            7 NVSNTFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQA   73 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTC
T ss_pred             ccccccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCC
Confidence            33457888888888888 6888 7788888888888888888888888888888876666665532           356


Q ss_pred             CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016          186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN  265 (757)
Q Consensus       186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  265 (757)
                      ++|++++|.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|.+++. +..   .++|++|++++|
T Consensus        74 ~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n  141 (454)
T 1jl5_A           74 HELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNN  141 (454)
T ss_dssp             SEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSS
T ss_pred             CEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCC
Confidence            777777777764 3331   2567777777777775 4532   36677777777776642 211   146677777777


Q ss_pred             CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016          266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL  345 (757)
Q Consensus       266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  345 (757)
                      .+++ +| .++++++|++|++++|++++ +|..   ..+|++|++++|.++                        + +| 
T Consensus       142 ~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~------------------------~-l~-  189 (454)
T 1jl5_A          142 QLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE------------------------E-LP-  189 (454)
T ss_dssp             CCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS------------------------S-CC-
T ss_pred             CCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC------------------------c-Cc-
Confidence            6664 44 46666666666666666653 3322   134555555555444                        3 34 


Q ss_pred             hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016          346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM  425 (757)
Q Consensus       346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  425 (757)
                      .++.+++|++|++++|++++ +|...                          ++|++|++++|.++ .+| .++.+++|+
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~-l~~~~--------------------------~~L~~L~l~~n~l~-~lp-~~~~l~~L~  240 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKK-LPDLP--------------------------LSLESIVAGNNILE-ELP-ELQNLPFLT  240 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSS-CCCCC--------------------------TTCCEEECCSSCCS-SCC-CCTTCTTCC
T ss_pred             cccCCCCCCEEECCCCcCCc-CCCCc--------------------------CcccEEECcCCcCC-ccc-ccCCCCCCC
Confidence            46777777777777777764 22211                          24444444444444 233 244444555


Q ss_pred             EEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcccc
Q 041016          426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSG  505 (757)
Q Consensus       426 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~  505 (757)
                      +|++++|++++ +|.   ..++|+.|++++|.+++ +|..  .++|++|++++|++++..                    
T Consensus       241 ~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l~--------------------  293 (454)
T 1jl5_A          241 TIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGLS--------------------  293 (454)
T ss_dssp             EEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEES--------------------
T ss_pred             EEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCccc--------------------
Confidence            55555554443 221   12345555555555443 2211  134444444444443310                    


Q ss_pred             ccchhccCCCCCCEEeCcCCcccCcchhhccCC-CCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccc
Q 041016          506 QLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQL-SSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG  584 (757)
Q Consensus       506 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~  584 (757)
                      ..      .++|++|++++|++++ ++    .+ ++|++|++++|++++ +|..   +++|++|++++|.+++ +|.   
T Consensus       294 ~~------~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---  354 (454)
T 1jl5_A          294 EL------PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---  354 (454)
T ss_dssp             CC------CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---
T ss_pred             Cc------CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---
Confidence            01      1355666666666553 11    12 366666666666664 3332   4666777777776652 333   


Q ss_pred             cccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCC--cCCccccCCCCCCEEeCCC
Q 041016          585 NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSG--EIPSSLGSLKGLKSLNLSY  662 (757)
Q Consensus       585 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~  662 (757)
                      .                                          ++.|+.|++++|++++  .+|..+++        ++.
T Consensus       355 ~------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~  384 (454)
T 1jl5_A          355 L------------------------------------------PQNLKQLHVEYNPLREFPDIPESVED--------LRM  384 (454)
T ss_dssp             C------------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCE--------EEC
T ss_pred             h------------------------------------------hhhccEEECCCCCCCcCCCChHHHHh--------hhh
Confidence            0                                          2334667777777766  45554432        234


Q ss_pred             CCCCccCCcchhCCCCCCEEeCCCCcCcc--CCCCCccCCCCCCEEeCCCCcceecCCCC
Q 041016          663 NQLQGNIPSTFGNLEILETLDLSHNSLSG--KIPQTFAKLQQLTSLYLSNNKLSGRIPES  720 (757)
Q Consensus       663 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  720 (757)
                      |.+.+.+|..   +++|++|++++|.+++  .+|.      +++.|.+.+|.+.+.+|..
T Consensus       385 n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          385 NSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             CC----------------------------------------------------------
T ss_pred             cccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccC
Confidence            5666666653   4678888888888876  4553      4566778888888877754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5e-40  Score=358.60  Aligned_cols=402  Identities=24%  Similarity=0.340  Sum_probs=182.5

Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEc
Q 041016          159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDL  238 (757)
Q Consensus       159 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  238 (757)
                      ++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++|+.+++..|..           .++++|++
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l   78 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL   78 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence            4555555555555 34444455555555555555555444555555444444444443321           23466666


Q ss_pred             cCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCC
Q 041016          239 QRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWN  318 (757)
Q Consensus       239 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  318 (757)
                      ++|.+++ +|..   .++|++|++++|.+++ +|..   .++|++|++++|.+++ ++..   .++              
T Consensus        79 ~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~--------------  132 (454)
T 1jl5_A           79 NNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPL--------------  132 (454)
T ss_dssp             TTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTT--------------
T ss_pred             cCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCC--------------
Confidence            6666553 2221   2455555555555554 3322   2445555555554442 1110   023              


Q ss_pred             CcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCC
Q 041016          319 DNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESR  398 (757)
Q Consensus       319 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~  398 (757)
                                |++|++++|++++ +| .++.+++|++|++++|++++ +|..+.  .|++|++++|++++ +| .+..++
T Consensus       133 ----------L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~--~L~~L~L~~n~l~~-l~-~~~~l~  195 (454)
T 1jl5_A          133 ----------LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLPP--SLEFIAAGNNQLEE-LP-ELQNLP  195 (454)
T ss_dssp             ----------CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCCSS-CC-CCTTCT
T ss_pred             ----------CCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCcc--cccEEECcCCcCCc-Cc-cccCCC
Confidence                      4444444444444 55 47777888888888887774 333221  24555555555443 23 344445


Q ss_pred             CCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcC
Q 041016          399 NLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISS  478 (757)
Q Consensus       399 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~  478 (757)
                      +|++|++++|.+++ +|..   .                        ++|++|++++|.+. .+|.+..+++|++|++++
T Consensus       196 ~L~~L~l~~N~l~~-l~~~---~------------------------~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~  246 (454)
T 1jl5_A          196 FLTAIYADNNSLKK-LPDL---P------------------------LSLESIVAGNNILE-ELPELQNLPFLTTIYADN  246 (454)
T ss_dssp             TCCEEECCSSCCSS-CCCC---C------------------------TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCCc-CCCC---c------------------------CcccEEECcCCcCC-cccccCCCCCCCEEECCC
Confidence            55555555555443 2211   1                        24555555555544 344444555555555555


Q ss_pred             CccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcc
Q 041016          479 NRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG  558 (757)
Q Consensus       479 n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  558 (757)
                      |++++. |. ....++.|++++|++++ +|..   .++|++|++++|++++. |.   -.++|++|++++|++++. +  
T Consensus       247 N~l~~l-~~-~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~--  313 (454)
T 1jl5_A          247 NLLKTL-PD-LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-C--  313 (454)
T ss_dssp             SCCSSC-CS-CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-C--
T ss_pred             CcCCcc-cc-cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-c--
Confidence            555432 11 11235555555555554 2322   36777888888877752 21   125777888888777642 2  


Q ss_pred             cCCC-CCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECc
Q 041016          559 LSNL-TSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLS  637 (757)
Q Consensus       559 l~~l-~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls  637 (757)
                        .+ ++|++|++++|++++ +|..                                             ++.|+.|+++
T Consensus       314 --~~~~~L~~L~Ls~N~l~~-lp~~---------------------------------------------~~~L~~L~L~  345 (454)
T 1jl5_A          314 --DLPPSLEELNVSNNKLIE-LPAL---------------------------------------------PPRLERLIAS  345 (454)
T ss_dssp             --CCCTTCCEEECCSSCCSC-CCCC---------------------------------------------CTTCCEEECC
T ss_pred             --CCcCcCCEEECCCCcccc-cccc---------------------------------------------CCcCCEEECC
Confidence              22 477777777777764 3432                                             2334677777


Q ss_pred             CCCCCCcCCccccCCCCCCEEeCCCCCCCc--cCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016          638 NNQLSGEIPSSLGSLKGLKSLNLSYNQLQG--NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG  715 (757)
Q Consensus       638 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  715 (757)
                      +|+++ .+|.   .+++|++|++++|++++  .+|..++.        ++.|.+.+.+|..   +++|++|++++|+++|
T Consensus       346 ~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          346 FNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE  410 (454)
T ss_dssp             SSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC---------------------------
T ss_pred             CCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence            77777 4554   36777777777777776  55554432        2345566666653   4789999999999998


Q ss_pred             --cCCCC
Q 041016          716 --RIPES  720 (757)
Q Consensus       716 --~iP~~  720 (757)
                        .||..
T Consensus       411 ~~~iP~s  417 (454)
T 1jl5_A          411 FPDIPES  417 (454)
T ss_dssp             -------
T ss_pred             cccchhh
Confidence              88864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-36  Score=331.54  Aligned_cols=130  Identities=25%  Similarity=0.245  Sum_probs=78.3

Q ss_pred             CCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCcc
Q 041016          147 LNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLS  226 (757)
Q Consensus       147 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~  226 (757)
                      ..+..+..++++++|++|++++|.+++. | .+..+++|++|++++|.+++. |  ++.+++|++|++++|.+++. +  
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence            3344455666777777777777777654 3 566677777777777776653 2  66666667777766666643 2  


Q ss_pred             ccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCc
Q 041016          227 LLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV  290 (757)
Q Consensus       227 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  290 (757)
                      ++++++|++|++++|.+++. +  ++.+++|++|++++|.+++.   .++++++|++|++++|.
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNK  159 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCS
T ss_pred             cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCC
Confidence            56666666666666666542 2  55566666666666655542   14444555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.2e-36  Score=332.16  Aligned_cols=169  Identities=22%  Similarity=0.227  Sum_probs=132.5

Q ss_pred             cccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCC
Q 041016          129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTN  208 (757)
Q Consensus       129 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  208 (757)
                      ..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. +  ++.+++|++|++++|.+++. +  ++++++
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~  107 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK  107 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred             cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence            4678889999999999999854 5 688999999999999999875 2  88899999999999999864 3  888999


Q ss_pred             CCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccC
Q 041016          209 LHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDS  288 (757)
Q Consensus       209 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  288 (757)
                      |++|++++|.+++ +|  ++.+++|++|++++|.+++.   .++.+++|++|++++|...+.+  .+..+++|++|++++
T Consensus       108 L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          108 LTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             CCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            9999999999986 34  88899999999999999874   3788999999999999655444  366677777777777


Q ss_pred             CccccccchhhhccCCCcEEEccCCCCc
Q 041016          289 NVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       289 n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      |.+++ +|  +..+++|+.|++++|.++
T Consensus       180 n~l~~-l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          180 NKITE-LD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             SCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred             Cccce-ec--cccCCCCCEEECcCCcCC
Confidence            77664 22  445555555555555444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-35  Score=325.72  Aligned_cols=346  Identities=29%  Similarity=0.370  Sum_probs=219.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016          108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ  187 (757)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  187 (757)
                      .+++++.|+++++.+. .+|  .+..+++|++|++++|.+++..|  +.++++|++|++++|.+.+..+  +.++++|++
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCc-cCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            4667888888888876 455  37778888888888888885433  8888888888888888876655  788888888


Q ss_pred             EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016          188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL  267 (757)
Q Consensus       188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  267 (757)
                      |++++|.+++..+  +.++++|++|++++|.+.+ ++ .+.++++|++|+++ |.+.+..  .+.++++|++|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence            8888888875432  7788888888888888774 33 47777888888875 3444332  367777777777777776


Q ss_pred             CCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhc
Q 041016          268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWL  347 (757)
Q Consensus       268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l  347 (757)
                      .+.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.++                        + + ..+
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~------------------------~-~-~~l  239 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK------------------------D-I-GTL  239 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC------------------------C-C-GGG
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc------------------------c-c-hhh
Confidence            643  236666677777777666665443  455566666666655544                        1 1 234


Q ss_pred             cCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEE
Q 041016          348 STQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVL  427 (757)
Q Consensus       348 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L  427 (757)
                      ..+++|+.|++++|.+.+..                       +  +..+++|++|++++|.+++..+  +..+++|++|
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~-----------------------~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  292 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLA-----------------------P--LSGLTKLTELKLGANQISNISP--LAGLTALTNL  292 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCG-----------------------G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hcCCCCCEEECCCCccccch-----------------------h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeE
Confidence            55666666666666655321                       1  4456677777777777765433  6667777777


Q ss_pred             EccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcccccc
Q 041016          428 MLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQL  507 (757)
Q Consensus       428 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~  507 (757)
                      ++++|++.+..+  +..+++|+.|++++|.+++..| +..+++|++|++++|+++                      +. 
T Consensus       293 ~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~----------------------~~-  346 (466)
T 1o6v_A          293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVS----------------------DV-  346 (466)
T ss_dssp             ECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCC----------------------CC-
T ss_pred             EcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccC----------------------Cc-
Confidence            777777765433  5566666666666666554332 333444444444443332                      21 


Q ss_pred             chhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcc
Q 041016          508 PQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG  553 (757)
Q Consensus       508 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  553 (757)
                       ..+.++++|++|++++|++++..|  +..+++|++|++++|++++
T Consensus       347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          347 -SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             -hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence             234455555555555555554444  4555555555555555553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.1e-35  Score=320.20  Aligned_cols=343  Identities=28%  Similarity=0.373  Sum_probs=247.2

Q ss_pred             ccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCC
Q 041016           81 QEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRY  160 (757)
Q Consensus        81 ~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  160 (757)
                      .+++.+++++.     .+.. + +.+..+++|++|++++|.+++ ++ . +.++++|++|++++|.+++..+  ++++++
T Consensus        46 ~~l~~L~l~~~-----~i~~-l-~~~~~l~~L~~L~Ls~n~l~~-~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~  113 (466)
T 1o6v_A           46 DQVTTLQADRL-----GIKS-I-DGVEYLNNLTQINFSNNQLTD-IT-P-LKNLTKLVDILMNNNQIADITP--LANLTN  113 (466)
T ss_dssp             HTCCEEECCSS-----CCCC-C-TTGGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred             ccccEEecCCC-----CCcc-C-cchhhhcCCCEEECCCCccCC-ch-h-hhccccCCEEECCCCccccChh--hcCCCC
Confidence            56889999875     3332 2 347889999999999999984 44 3 9999999999999999996554  999999


Q ss_pred             CCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccC
Q 041016          161 LEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQR  240 (757)
Q Consensus       161 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  240 (757)
                      |++|++++|.+++..+  +.++++|++|++++|.+.+ ++ .++.+++|++|+++ |.+.+..  .+.++++|++|++++
T Consensus       114 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~  186 (466)
T 1o6v_A          114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISS  186 (466)
T ss_dssp             CCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCS
T ss_pred             CCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcC
Confidence            9999999999997654  8999999999999999985 33 59999999999997 4555333  389999999999999


Q ss_pred             CcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCc
Q 041016          241 NSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDN  320 (757)
Q Consensus       241 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  320 (757)
                      |.+++.  ..+..+++|++|++++|.+.+..+  ++.+++|++|++++|.+++.  ..+..+++|++|++++|.++....
T Consensus       187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~  260 (466)
T 1o6v_A          187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP  260 (466)
T ss_dssp             SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence            999854  458899999999999999997655  78899999999999999853  457889999999999998873322


Q ss_pred             ccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCC
Q 041016          321 VSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRN  399 (757)
Q Consensus       321 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~  399 (757)
                                                +..+++|+.|++++|.+.+..+  +..++ |++|++++|++.+..+  +..+++
T Consensus       261 --------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~  310 (466)
T 1o6v_A          261 --------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN  310 (466)
T ss_dssp             --------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             --------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence                                      4444555555555555543322  22232 4444444444443222  445556


Q ss_pred             CCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCC
Q 041016          400 LSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSN  479 (757)
Q Consensus       400 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n  479 (757)
                      |++|++++|++++..+  +..+++|++|++++|.+++.  ..+.++++|+.|++++|++++..| +..+++|+.|++++|
T Consensus       311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  385 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCE
T ss_pred             CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCC
Confidence            6666666666655443  44556666666666665543  245556666666666666655544 555556666666655


Q ss_pred             cccc
Q 041016          480 RFSG  483 (757)
Q Consensus       480 ~l~~  483 (757)
                      ++++
T Consensus       386 ~~~~  389 (466)
T 1o6v_A          386 AWTN  389 (466)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            5554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=328.07  Aligned_cols=343  Identities=20%  Similarity=0.200  Sum_probs=219.0

Q ss_pred             ceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCc
Q 041016          330 TELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRN  408 (757)
Q Consensus       330 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n  408 (757)
                      +.++.+++.++ .+|..+  .++++.|++++|++++..+..|..++ |++|++++|.+++..|..+.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            35666666655 345433  24677777777777766666666665 667777766666666666666666666666666


Q ss_pred             cccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCc
Q 041016          409 NFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPS  487 (757)
Q Consensus       409 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~  487 (757)
                      .+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+ .+..+++|++|++++|+++     
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----  165 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-----  165 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-----
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-----
Confidence            6665555556666666666666666666666666666666666666666665544 5556666666555555554     


Q ss_pred             hhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCE
Q 041016          488 SFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQI  567 (757)
Q Consensus       488 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~  567 (757)
                                       +..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+.+.++.......+|++
T Consensus       166 -----------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  228 (477)
T 2id5_A          166 -----------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS  228 (477)
T ss_dssp             -----------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSE
T ss_pred             -----------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccE
Confidence                             344445666677777777777766666666666777777777776666666655555556777


Q ss_pred             EECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCc
Q 041016          568 LDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPS  647 (757)
Q Consensus       568 L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~  647 (757)
                      |++++|.+++..+..+..++                                          .|+.|+|++|.+++..+.
T Consensus       229 L~l~~n~l~~~~~~~~~~l~------------------------------------------~L~~L~Ls~n~l~~~~~~  266 (477)
T 2id5_A          229 LSITHCNLTAVPYLAVRHLV------------------------------------------YLRFLNLSYNPISTIEGS  266 (477)
T ss_dssp             EEEESSCCCSCCHHHHTTCT------------------------------------------TCCEEECCSSCCCEECTT
T ss_pred             EECcCCcccccCHHHhcCcc------------------------------------------ccCeeECCCCcCCccChh
Confidence            77777766633223343333                                          336777777777766666


Q ss_pred             cccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCC
Q 041016          648 SLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQI  727 (757)
Q Consensus       648 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~  727 (757)
                      .|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++++|++.+..+....+....
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~  346 (477)
T 2id5_A          267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRW  346 (477)
T ss_dssp             SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTT
T ss_pred             hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhh
Confidence            67777777777777777777777777777777777777777777666667777777777777777765433221111222


Q ss_pred             CCccccCCCCCCC
Q 041016          728 DPVIYANNSGLCG  740 (757)
Q Consensus       728 ~~~~~~gn~~lc~  740 (757)
                      ... |.++...|+
T Consensus       347 ~~~-~~~~~~~C~  358 (477)
T 2id5_A          347 RLN-FNRQQPTCA  358 (477)
T ss_dssp             SSC-CTTCCCBEE
T ss_pred             ccc-cCccCceeC
Confidence            223 555555564

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=325.43  Aligned_cols=303  Identities=21%  Similarity=0.204  Sum_probs=189.2

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +++++|+|++|.+++..+ ..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            466677777777664333 5666677777777777776666666666777777777777766665555666666666666


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG  269 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  269 (757)
                      +++|.+.+..|..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            66666666666666666666666666666666656666666666666666666665555556666666666666666665


Q ss_pred             ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccC
Q 041016          270 AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLST  349 (757)
Q Consensus       270 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~  349 (757)
                      ..+..|..+++|++|++++|...+.++.......+|++|++++|.++                        +..+..+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~------------------------~~~~~~~~~  246 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT------------------------AVPYLAVRH  246 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC------------------------SCCHHHHTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc------------------------ccCHHHhcC
Confidence            55555666666666666665555444444444444444444444443                        333345666


Q ss_pred             CCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEc
Q 041016          350 QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLML  429 (757)
Q Consensus       350 ~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L  429 (757)
                      +++|+.|++++|.+++..+                       ..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus       247 l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  303 (477)
T 2id5_A          247 LVYLRFLNLSYNPISTIEG-----------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV  303 (477)
T ss_dssp             CTTCCEEECCSSCCCEECT-----------------------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred             ccccCeeECCCCcCCccCh-----------------------hhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence            6777777777766664433                       34445566666666666666666666666666666666


Q ss_pred             cCCcccccChHhhhccCCCCEEEccCCcccc
Q 041016          430 SSNNFSGHVPKSISNIYRLLVLDLSNNSFSG  460 (757)
Q Consensus       430 ~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  460 (757)
                      ++|++++..+..|..+++|+.|++++|++..
T Consensus       304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          304 SGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            6666666555556666666666666666653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.7e-34  Score=307.21  Aligned_cols=313  Identities=20%  Similarity=0.216  Sum_probs=211.6

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCC
Q 041016          107 FRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLK  186 (757)
Q Consensus       107 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  186 (757)
                      ..++++++|++++|.++ .+|...|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|+
T Consensus        42 ~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            35678888888888876 56656678888888888888888876667888888888888888888877777788888888


Q ss_pred             EEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCC
Q 041016          187 QLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA  266 (757)
Q Consensus       187 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  266 (757)
                      +|++++|.++...+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++.   .+..+++|++|++++|.
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence            888888888754444567788888888888888777677777788888888888877654   24556777777777776


Q ss_pred             CCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchh
Q 041016          267 LTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLW  346 (757)
Q Consensus       267 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  346 (757)
                      +++.     ...++|++|++++|.+... +.  ...++|+.|++++|.++                        +.  .+
T Consensus       198 l~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~------------------------~~--~~  243 (390)
T 3o6n_A          198 LSTL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLT------------------------DT--AW  243 (390)
T ss_dssp             CSEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCC------------------------CC--GG
T ss_pred             cccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCc------------------------cc--HH
Confidence            6532     2234566666666665532 21  11244455555544443                        32  34


Q ss_pred             ccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccE
Q 041016          347 LSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMV  426 (757)
Q Consensus       347 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  426 (757)
                      +..+++|++|++++|.+.+..|.                       .+..+++|++|++++|++++ ++..+..+++|++
T Consensus       244 l~~l~~L~~L~Ls~n~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~  299 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNELEKIMYH-----------------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV  299 (390)
T ss_dssp             GGGCTTCSEEECCSSCCCEEESG-----------------------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCE
T ss_pred             HcCCCCccEEECCCCcCCCcChh-----------------------HccccccCCEEECCCCcCcc-cCcccCCCCCCCE
Confidence            56666666666666666544333                       34445566666666666654 3444455667777


Q ss_pred             EEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccC
Q 041016          427 LMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE  484 (757)
Q Consensus       427 L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~  484 (757)
                      |++++|+++ .+|..+..+++|+.|++++|.++.. + +..+++|++|++++|++...
T Consensus       300 L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHH
T ss_pred             EECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCCEEEcCCCCccch
Confidence            777777766 4455566777777777777776543 2 55667777777777777653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8.8e-35  Score=302.09  Aligned_cols=199  Identities=34%  Similarity=0.572  Sum_probs=179.3

Q ss_pred             ccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCC-CCCEEECcCCcccccCCcc
Q 041016          504 SGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLT-SLQILDLSNNNLLGKIPSS  582 (757)
Q Consensus       504 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~~~~p~~  582 (757)
                      ++.+|..|.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..
T Consensus       114 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  193 (313)
T 1ogq_A          114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             CCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence            345566777888999999999999888888899999999999999999988998898888 8999999999999888888


Q ss_pred             cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCC
Q 041016          583 FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSY  662 (757)
Q Consensus       583 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  662 (757)
                      +..+. |                                          +.|++++|++++.+|..|..+++|++|++++
T Consensus       194 ~~~l~-L------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  230 (313)
T 1ogq_A          194 FANLN-L------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAK  230 (313)
T ss_dssp             GGGCC-C------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred             HhCCc-c------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence            76653 3                                          8899999999999999999999999999999


Q ss_pred             CCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCCCCC
Q 041016          663 NQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQ  742 (757)
Q Consensus       663 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc~~~  742 (757)
                      |++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+++.++.... +.||+.+||.|
T Consensus       231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~-l~~N~~lc~~p  308 (313)
T 1ogq_A          231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCLCGSP  308 (313)
T ss_dssp             SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG-TCSSSEEESTT
T ss_pred             CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH-hcCCCCccCCC
Confidence            999987776 8889999999999999999999999999999999999999999999998888888888 99999999998


Q ss_pred             CCCCCC
Q 041016          743 IQVVCP  748 (757)
Q Consensus       743 l~~~c~  748 (757)
                      +. .|+
T Consensus       309 ~~-~C~  313 (313)
T 1ogq_A          309 LP-ACT  313 (313)
T ss_dssp             SS-CCC
T ss_pred             CC-CCC
Confidence            85 674

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1e-33  Score=321.28  Aligned_cols=349  Identities=19%  Similarity=0.205  Sum_probs=225.5

Q ss_pred             CCCCCCCCCCCcc----cceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCcccc
Q 041016           56 GLETWNSSSDCCR----WEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGF  131 (757)
Q Consensus        56 ~~~~w~~~~~~c~----w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~  131 (757)
                      .+++|..+.+||.    |.++.|+.     +   ++-...     .  ......-..+++++.+++++|.+. .+|...|
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~-----~---i~~~~~-----~--~~~~~~~l~l~~l~~l~l~~~~l~-~lp~~~~   71 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDV-----H---IDMQTQ-----D--VYFGFEDITLNNQKIVTFKNSTMR-KLPAALL   71 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSC-----E---ECSSCC-----C--CEESCSSGGGCCCSEEEESSCEES-EECTHHH
T ss_pred             cccCCCCCCcCcccCcCceeEecCc-----e---eccccc-----c--cccCcccccCCCceEEEeeCCCCC-CcCHHHH
Confidence            4678988777874    66655542     1   111110     0  011112234677888888888876 5665667


Q ss_pred             CCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016          132 ANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK  211 (757)
Q Consensus       132 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  211 (757)
                      .++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  151 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT  151 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence            88888888888888888777778888888888888888888877777888888888888888888655555678888888


Q ss_pred             EEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcc
Q 041016          212 LSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL  291 (757)
Q Consensus       212 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  291 (757)
                      |++++|.+++..|..|.++++|++|++++|.+++.   .+..+++|+.|++++|.+++.     ....+|+.|++++|.+
T Consensus       152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSI  223 (597)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCC
T ss_pred             EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcc
Confidence            88888888777777777888888888888877754   245566777777777766532     2334566666666665


Q ss_pred             ccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccc
Q 041016          292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWL  371 (757)
Q Consensus       292 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  371 (757)
                      ....+..   .++|+.|++++|.++                        +  +.++..+++|+.|++++|.+.+..|.  
T Consensus       224 ~~~~~~~---~~~L~~L~L~~n~l~------------------------~--~~~l~~l~~L~~L~Ls~N~l~~~~~~--  272 (597)
T 3oja_B          224 NVVRGPV---NVELTILKLQHNNLT------------------------D--TAWLLNYPGLVEVDLSYNELEKIMYH--  272 (597)
T ss_dssp             CEEECSC---CSCCCEEECCSSCCC------------------------C--CGGGGGCTTCSEEECCSSCCCEEESG--
T ss_pred             ccccccc---CCCCCEEECCCCCCC------------------------C--ChhhccCCCCCEEECCCCccCCCCHH--
Confidence            5322211   134444444444443                        3  24556666666666666666554443  


Q ss_pred             cCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEE
Q 041016          372 SELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVL  451 (757)
Q Consensus       372 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  451 (757)
                                           .+..+++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus       273 ---------------------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          273 ---------------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL  329 (597)
T ss_dssp             ---------------------GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred             ---------------------HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence                                 34445566666666666654 3444555666777777777666 455566667777777


Q ss_pred             EccCCcccccCCCCCCCCcccEEECcCCccccC
Q 041016          452 DLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE  484 (757)
Q Consensus       452 ~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~  484 (757)
                      ++++|.+++.  .+..++.|+.|++++|++.+.
T Consensus       330 ~L~~N~l~~~--~~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          330 YLDHNSIVTL--KLSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             ECCSSCCCCC--CCCTTCCCSEEECCSSCEEHH
T ss_pred             ECCCCCCCCc--ChhhcCCCCEEEeeCCCCCCh
Confidence            7777776543  255566777777777776654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.2e-33  Score=299.10  Aligned_cols=315  Identities=22%  Similarity=0.237  Sum_probs=197.3

Q ss_pred             hhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCC
Q 041016          345 LWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS  423 (757)
Q Consensus       345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  423 (757)
                      ..+..+++|++|++++|.+.+..+..+..+. |++|++++|.+.+..|..+..+++|++|++++|.+++..+..|..+++
T Consensus        63 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  142 (390)
T 3o6n_A           63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK  142 (390)
T ss_dssp             HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCC
Confidence            3345555666666666555544444444443 444444444444444444555555555555555555333333455555


Q ss_pred             ccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCcc
Q 041016          424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKF  503 (757)
Q Consensus       424 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l  503 (757)
                      |++|++++|.+.+..+..+..+++|++|++++|.+++.  .+..++.|+.+++++|                      .+
T Consensus       143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n----------------------~l  198 (390)
T 3o6n_A          143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN----------------------LL  198 (390)
T ss_dssp             CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS----------------------CC
T ss_pred             CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc----------------------cc
Confidence            55555555555554455555555555555555554432  1223344444444444                      33


Q ss_pred             ccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCccc
Q 041016          504 SGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSF  583 (757)
Q Consensus       504 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~  583 (757)
                      ++.     ...++|++|++++|.+... |..  ..++|++|++++|.+++.  ..+..+++|++|++++|.+++..|..|
T Consensus       199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            321     2234677777777777643 322  246777777777777643  456777777777777777777666666


Q ss_pred             ccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCC
Q 041016          584 GNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYN  663 (757)
Q Consensus       584 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  663 (757)
                      ..+++|                                          +.|++++|++++ +|..+..+++|++|++++|
T Consensus       269 ~~l~~L------------------------------------------~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          269 VKMQRL------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             TTCSSC------------------------------------------CEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred             cccccC------------------------------------------CEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence            555444                                          777888888774 4556678899999999999


Q ss_pred             CCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCCCCC
Q 041016          664 QLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQ  742 (757)
Q Consensus       664 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc~~~  742 (757)
                      +++ .+|..+..+++|++|++++|.++...   +..+++|++|++++|++.+.-. ...+..+.... +.+++..|+.+
T Consensus       306 ~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~-~~~~~~~c~~~  378 (390)
T 3o6n_A          306 HLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPA-VDDADQHCKID  378 (390)
T ss_dssp             CCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTT-BCCCCSCCCTT
T ss_pred             cce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhH-HHHHHHHHhhc-ccccCceeccc
Confidence            998 55667889999999999999998652   6778999999999999987432 23345555566 78888888754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.3e-33  Score=316.22  Aligned_cols=319  Identities=22%  Similarity=0.222  Sum_probs=211.7

Q ss_pred             cCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccC
Q 041016          341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIG  419 (757)
Q Consensus       341 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~  419 (757)
                      ...+..+..+++|++|++++|.+.+..+..+..+. |++|++++|.+++..|..+..+++|++|++++|.+++..+..|.
T Consensus        65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  144 (597)
T 3oja_B           65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH  144 (597)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence            44444456666666666666666655554454444 55555555555544444455555555555555555544444445


Q ss_pred             CCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEcc
Q 041016          420 QSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLS  499 (757)
Q Consensus       420 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~  499 (757)
                      .+++|++|++++|.+++..|..|..+++|++|++++|.+++.  .+..++.|+                      .++++
T Consensus       145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~----------------------~L~l~  200 (597)
T 3oja_B          145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLF----------------------HANVS  200 (597)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCS----------------------EEECC
T ss_pred             cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhhhh----------------------hhhcc
Confidence            555555555555555555555555555555555555555432  122333444                      44444


Q ss_pred             CCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccC
Q 041016          500 ENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKI  579 (757)
Q Consensus       500 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~  579 (757)
                      +|.+++     +...++|+.|++++|.+....+ .+  .++|++|++++|.+++  +..+..+++|++|++++|.+++..
T Consensus       201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~  270 (597)
T 3oja_B          201 YNLLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM  270 (597)
T ss_dssp             SSCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE
T ss_pred             cCcccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC
Confidence            444433     2234567788888887764332 22  3578888888888875  356778888888888888888777


Q ss_pred             CcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEe
Q 041016          580 PSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLN  659 (757)
Q Consensus       580 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  659 (757)
                      |..|.++++|                                          +.|+|++|.+++ +|..+..+++|++|+
T Consensus       271 ~~~~~~l~~L------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          271 YHPFVKMQRL------------------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLD  307 (597)
T ss_dssp             SGGGTTCSSC------------------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEE
T ss_pred             HHHhcCccCC------------------------------------------CEEECCCCCCCC-CCcccccCCCCcEEE
Confidence            7777665544                                          788888888885 566777899999999


Q ss_pred             CCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCCC
Q 041016          660 LSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLC  739 (757)
Q Consensus       660 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~lc  739 (757)
                      |++|.++ .+|..+..+++|++|+|++|.+++..   +..+++|++|++++|++.+..+. ..+..+.... +.+++..|
T Consensus       308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~-~~~~~~~C  381 (597)
T 3oja_B          308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPA-VDDADQHC  381 (597)
T ss_dssp             CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTT-BCCCCCCC
T ss_pred             CCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhc-cccccccC
Confidence            9999999 57778899999999999999998763   66788999999999999986432 3456667777 88999999


Q ss_pred             CCC
Q 041016          740 GMQ  742 (757)
Q Consensus       740 ~~~  742 (757)
                      +.+
T Consensus       382 ~~~  384 (597)
T 3oja_B          382 KID  384 (597)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7.4e-32  Score=285.42  Aligned_cols=307  Identities=23%  Similarity=0.348  Sum_probs=198.9

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016          106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL  185 (757)
Q Consensus       106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  185 (757)
                      +..+++|++|+++++.+. .++  .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++..  +.+.++++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             chhcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            346678888888888886 454  37778888888888888874 343 78888888888888887753  357788888


Q ss_pred             CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016          186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN  265 (757)
Q Consensus       186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  265 (757)
                      ++|++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            8888888887743 33 7778888888888886554433 37777788888888877764433  677777777777777


Q ss_pred             CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch
Q 041016          266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL  345 (757)
Q Consensus       266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~  345 (757)
                      .+.+..+  +..+++|+.+++++|.+++..+  +..+++|++|++++|.++                        +. +.
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~------------------------~~-~~  238 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT------------------------DL-SP  238 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC------------------------CC-GG
T ss_pred             ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC------------------------CC-cc
Confidence            7764432  6677777777777777764433  566667777777666665                        22 22


Q ss_pred             hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016          346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM  425 (757)
Q Consensus       346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  425 (757)
                       +..+++|++|++++|.+++.                         +.+..+++|++|++++|.+++.  ..+..+++|+
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~-------------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~  290 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDI-------------------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN  290 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             -hhcCCCCCEEECCCCccCCC-------------------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence             55666666666666666532                         1233344555555555555433  2345555566


Q ss_pred             EEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccc
Q 041016          426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFS  482 (757)
Q Consensus       426 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~  482 (757)
                      +|++++|.+++..+..+..+++|++|++++|.+++..| +..+++|++|++++|.++
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence            66666666555555556666666666666666554444 555566666666666553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=1.2e-33  Score=295.14  Aligned_cols=274  Identities=21%  Similarity=0.272  Sum_probs=241.5

Q ss_pred             CCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCC----CCCCCCcccceeeeCCC------CCcccEEEEEcCCCCC
Q 041016           24 CCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETW----NSSSDCCRWEMVRCRSR------GPSQEVTGLDLNNLFP   93 (757)
Q Consensus        24 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~~~------~~~~~v~~l~L~~~~~   93 (757)
                      .+..+|+.||++||+.+..|   +      .+...+|    ....++|.|.|+.|...      ....+|+.++|++.  
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~---~------~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n--   91 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNAD---R------NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV--   91 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHC---C------TTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS--
T ss_pred             ccCchHHHHHHHHHHhccCC---c------hhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC--
Confidence            46678999999999998632   3      2334567    34568999999999521      12468999999986  


Q ss_pred             CCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCC
Q 041016           94 LDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEG  173 (757)
Q Consensus        94 ~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  173 (757)
                         .+. .+++.++++++|++|+|++|.++ .+| ..++++++|++|+|++|.++ .+|..++++++|++|++++|.+.+
T Consensus        92 ---~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~  164 (328)
T 4fcg_A           92 ---PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT  164 (328)
T ss_dssp             ---CCS-SCCSCGGGGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC
T ss_pred             ---Cch-hcChhhhhCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc
Confidence               444 67888999999999999999998 888 78999999999999999999 889999999999999999998888


Q ss_pred             cccccccC---------CCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc
Q 041016          174 KLSSRVAG---------LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       174 ~~~~~~~~---------l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  244 (757)
                      .+|..+..         +++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..+..+++|++|++++|.+.
T Consensus       165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             CCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTC
T ss_pred             ccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcch
Confidence            88877654         999999999999998 788899999999999999999994 6667999999999999999999


Q ss_pred             ccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcC
Q 041016          245 GEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKW  317 (757)
Q Consensus       245 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  317 (757)
                      +.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|+.+++..+.+..
T Consensus       243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999877653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.3e-31  Score=283.55  Aligned_cols=307  Identities=23%  Similarity=0.319  Sum_probs=238.0

Q ss_pred             ccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCC
Q 041016          130 GFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNL  209 (757)
Q Consensus       130 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  209 (757)
                      .+..+++|++|+++++.+. .+| .+..+++|++|++++|.+++..+  +.++++|++|++++|.+++ + ..+.++++|
T Consensus        39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L  112 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNL  112 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred             cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence            3567889999999999988 445 48889999999999999886544  8889999999999998875 3 368888899


Q ss_pred             CEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCC
Q 041016          210 HKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSN  289 (757)
Q Consensus       210 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  289 (757)
                      ++|++++|.+.+..+  +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|++++|
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence            999999888875433  7788888888888886554433 47778888888888887775433  667777777777777


Q ss_pred             ccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccc
Q 041016          290 VLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ  369 (757)
Q Consensus       290 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~  369 (757)
                      .+.+..+  +..+++|+.+++++|.+.                        +..+  +..+++|++|++++|++++.   
T Consensus       188 ~l~~~~~--~~~l~~L~~L~l~~n~l~------------------------~~~~--~~~~~~L~~L~l~~n~l~~~---  236 (347)
T 4fmz_A          188 QIEDISP--LASLTSLHYFTAYVNQIT------------------------DITP--VANMTRLNSLKIGNNKITDL---  236 (347)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCC------------------------CCGG--GGGCTTCCEEECCSSCCCCC---
T ss_pred             ccccccc--ccCCCccceeecccCCCC------------------------CCch--hhcCCcCCEEEccCCccCCC---
Confidence            7664332  556666666666666554                        2222  66677777777777776632   


Q ss_pred             cccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCC
Q 041016          370 WLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLL  449 (757)
Q Consensus       370 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~  449 (757)
                                           +. +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|+
T Consensus       237 ---------------------~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~  290 (347)
T 4fmz_A          237 ---------------------SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN  290 (347)
T ss_dssp             ---------------------GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             ---------------------cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence                                 22 56778999999999999864  4688899999999999999865  4688999999


Q ss_pred             EEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccc
Q 041016          450 VLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFS  504 (757)
Q Consensus       450 ~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~  504 (757)
                      .|++++|.+++..+ .+..+++|++|++++|++++..|......++.|++++|.++
T Consensus       291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred             EEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence            99999999998777 68899999999999999999888444556999999999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=3.4e-30  Score=270.40  Aligned_cols=196  Identities=23%  Similarity=0.303  Sum_probs=82.3

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016          111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL  190 (757)
Q Consensus       111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  190 (757)
                      .+++|++++|.+++ ++...|+++++|++|++++|.+++..|..|+++++|++|++++|.++.. |..+.  ++|++|++
T Consensus        53 ~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~--~~L~~L~l  128 (330)
T 1xku_A           53 DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKMP--KTLQELRV  128 (330)
T ss_dssp             TCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSCC--TTCCEEEC
T ss_pred             CCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhhc--ccccEEEC
Confidence            44455555555442 2223444455555555555555444444444555555555555444422 22211  34444444


Q ss_pred             cCccCCccCchhccCCCCCCEEEcccccccc--ccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC
Q 041016          191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG--GIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT  268 (757)
Q Consensus       191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  268 (757)
                      ++|.+++..+..+.++++|++|++++|.+..  ..+..+.++++|++|++++|.++. +|..+.  ++|++|++++|.++
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~  205 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT  205 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence            4444444444444444444444444444421  333344444444444444444432 222221  33444444444444


Q ss_pred             CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCC
Q 041016          269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN  313 (757)
Q Consensus       269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  313 (757)
                      +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus       206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence            333333444444444444444433333333333333333333333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=8.4e-34  Score=312.92  Aligned_cols=398  Identities=20%  Similarity=0.206  Sum_probs=184.1

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCC----CcCccccCCCCCCEEEccCCcCCCcccccc-cCCC-
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNG----SIPSQLFNLRYLEFLDLSANAIEGKLSSRV-AGLK-  183 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~-  183 (757)
                      ++|++||+++|.++.......+..+++|++|++++|.+++    .++..+..+++|++|++++|.+....+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            3456666666666533221225556666666666666653    234455555666666666665544322222 2233 


Q ss_pred             ---CCCEEEccCccCCc----cCchhccCCCCCCEEEccccccccccCcccc-----CCCCCCEEEccCCcCcccCcccc
Q 041016          184 ---NLKQLILDDNLIQG----QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL-----QLRKLETLDLQRNSLSGEIPEDI  251 (757)
Q Consensus       184 ---~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~l  251 (757)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++....  
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--  160 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE--  160 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence               45555555555542    2344455555555555555554432222211     123344444444444332110  


Q ss_pred             cCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhc-----cCCCcEEEccCCCCcCCCcccccCC
Q 041016          252 GTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFD-----LQGMKSLYLGGNKLKWNDNVSIVPK  326 (757)
Q Consensus       252 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~~~~~~~  326 (757)
                                        .++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.++....      
T Consensus       161 ------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------  216 (461)
T 1z7x_W          161 ------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC------  216 (461)
T ss_dssp             ------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH------
T ss_pred             ------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH------
Confidence                              12333344455555555555444332222221     3344444444444431100      


Q ss_pred             cccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCc
Q 041016          327 CMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLS  406 (757)
Q Consensus       327 ~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~  406 (757)
                                    ..++..+..+++|++|++++|.+.+.....+..                  .....+++|++|+++
T Consensus       217 --------------~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~------------------~~~~~~~~L~~L~L~  264 (461)
T 1z7x_W          217 --------------RDLCGIVASKASLRELALGSNKLGDVGMAELCP------------------GLLHPSSRLRTLWIW  264 (461)
T ss_dssp             --------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH------------------HHTSTTCCCCEEECT
T ss_pred             --------------HHHHHHHHhCCCccEEeccCCcCChHHHHHHHH------------------HHhcCCCCceEEECc
Confidence                          013444555555555555555554321111000                  000122344444444


Q ss_pred             Ccccccc----CCcccCCCCCccEEEccCCcccccChHhhhcc-----CCCCEEEccCCccccc----CC-CCCCCCccc
Q 041016          407 RNNFSGE----LPETIGQSTSVMVLMLSSNNFSGHVPKSISNI-----YRLLVLDLSNNSFSGE----FP-AFGSDSLVG  472 (757)
Q Consensus       407 ~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~ls~n~l~~~----~~-~~~~~~~L~  472 (757)
                      +|.+++.    ++..+..+++|++|++++|.+.+..+..+...     ++|++|++++|.+++.    ++ .+..+++|+
T Consensus       265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  344 (461)
T 1z7x_W          265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL  344 (461)
T ss_dssp             TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc
Confidence            4444332    23333334455555555554443333333222     3555555555554432    11 222334444


Q ss_pred             EEECcCCccccCCCchhhhcccEEEccCCccccccchhccC-CCCCCEEeCcCCcccC----cchhhccCCCCCCEEEcc
Q 041016          473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSN-LSLLQHLDLHDNNLTG----EFPAFLSQLSSLQVLNLR  547 (757)
Q Consensus       473 ~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls  547 (757)
                      +|++++|++.+..+..+                  ...+.. .++|++|++++|.+++    .+|..+..+++|++|+++
T Consensus       345 ~L~Ls~n~i~~~~~~~l------------------~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          345 ELQISNNRLEDAGVREL------------------CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             EEECCSSBCHHHHHHHH------------------HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             EEEccCCccccccHHHH------------------HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence            44444444332211111                  112222 5678888888887775    567777777888888888


Q ss_pred             CCcCccccCc----cc-CCCCCCCEEECcCCcccccCCccc
Q 041016          548 NTALEGSITD----GL-SNLTSLQILDLSNNNLLGKIPSSF  583 (757)
Q Consensus       548 ~n~l~~~~~~----~l-~~l~~L~~L~ls~n~l~~~~p~~~  583 (757)
                      +|++++....    .+ ....+|+.|++.++.+....+..+
T Consensus       407 ~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l  447 (461)
T 1z7x_W          407 NNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  447 (461)
T ss_dssp             SSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHH
Confidence            8877643221    12 124567888887777665444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.5e-30  Score=270.39  Aligned_cols=288  Identities=23%  Similarity=0.274  Sum_probs=154.9

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016          111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL  190 (757)
Q Consensus       111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  190 (757)
                      ++++++++++.++ .+| ..+  .++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVP-KEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCC-SCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccC-CCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4666666666665 455 222  246666666666666555556666666666666666666555666666666666666


Q ss_pred             cCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcc--cCcccccCCCCCCEEEccCCCCC
Q 041016          191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSG--EIPEDIGTLANITILALSNNALT  268 (757)
Q Consensus       191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~  268 (757)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.++.  ..+..+..+ +|++|++++|.++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            666655 3343333  556666666665554444445555555555555555532  334444444 4555555555544


Q ss_pred             CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016          269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS  348 (757)
Q Consensus       269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  348 (757)
                      + +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.++                        +..+.++.
T Consensus       186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~------------------------~~~~~~~~  238 (332)
T 2ft3_A          186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR------------------------MIENGSLS  238 (332)
T ss_dssp             S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC------------------------CCCTTGGG
T ss_pred             c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC------------------------cCChhHhh
Confidence            3 222221  34444444444444333333333333333333333333                        33333444


Q ss_pred             CCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCC------CC
Q 041016          349 TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQ------ST  422 (757)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~------~~  422 (757)
                      .+++|++|++++|+++                        .+|..+..+++|++|++++|++++..+..|..      .+
T Consensus       239 ~l~~L~~L~L~~N~l~------------------------~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  294 (332)
T 2ft3_A          239 FLPTLRELHLDNNKLS------------------------RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA  294 (332)
T ss_dssp             GCTTCCEEECCSSCCC------------------------BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred             CCCCCCEEECCCCcCe------------------------ecChhhhcCccCCEEECCCCCCCccChhHccccccccccc
Confidence            4444444444444443                        44555566667777777777776555555543      35


Q ss_pred             CccEEEccCCccc--ccChHhhhccCCCCEEEccCCc
Q 041016          423 SVMVLMLSSNNFS--GHVPKSISNIYRLLVLDLSNNS  457 (757)
Q Consensus       423 ~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~ls~n~  457 (757)
                      .|+.|++++|.+.  +..|..|..+++|+.+++++|+
T Consensus       295 ~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            6777888887766  5666777777788887777764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1e-29  Score=266.78  Aligned_cols=266  Identities=21%  Similarity=0.271  Sum_probs=153.7

Q ss_pred             CCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEEC
Q 041016          398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDI  476 (757)
Q Consensus       398 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l  476 (757)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+| .+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            45666666666666555555666666666666666666555666666666666666666655 233 221  45555555


Q ss_pred             cCCccccCCCchhhhc--ccEEEccCCcccc--ccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCc
Q 041016          477 SSNRFSGEVPSSFGVT--ILMLSLSENKFSG--QLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALE  552 (757)
Q Consensus       477 ~~n~l~~~~~~~~~~~--l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  552 (757)
                      ++|++++..+..+...  ++.|++++|.+..  ..+..+.++++|++|++++|.++. +|..+.  ++|++|++++|.++
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~  205 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKIT  205 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCC
Confidence            5555554443333322  4445555554432  445556666666666666666663 333332  56666666666666


Q ss_pred             cccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccC
Q 041016          553 GSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYS  632 (757)
Q Consensus       553 ~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  632 (757)
                      +..+..+..+++|++|++++|.+++..+..+..+++|                                          +
T Consensus       206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L------------------------------------------~  243 (330)
T 1xku_A          206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL------------------------------------------R  243 (330)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC------------------------------------------C
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC------------------------------------------C
Confidence            6666666666666666666666665555455443333                                          6


Q ss_pred             eEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC------CCCCEEeCCCCcCcc--CCCCCccCCCCCC
Q 041016          633 LMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL------EILETLDLSHNSLSG--KIPQTFAKLQQLT  704 (757)
Q Consensus       633 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~  704 (757)
                      .|++++|+++ .+|..+..+++|++|++++|++++..+..|...      +.|+.|++++|.+..  ..|..|..+..++
T Consensus       244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~  322 (330)
T 1xku_A          244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA  322 (330)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred             EEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccccee
Confidence            6666666666 556666666666666666666666555555432      556666666666643  4455666666666


Q ss_pred             EEeCCCCc
Q 041016          705 SLYLSNNK  712 (757)
Q Consensus       705 ~L~ls~N~  712 (757)
                      .+++++|+
T Consensus       323 ~l~L~~N~  330 (330)
T 1xku_A          323 AVQLGNYK  330 (330)
T ss_dssp             GEEC----
T ss_pred             EEEecccC
Confidence            66666663

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.8e-33  Score=310.33  Aligned_cols=354  Identities=20%  Similarity=0.219  Sum_probs=246.5

Q ss_pred             ccEEEEEcCCCCCCCCcceeeccc-cccCCCCCCEEeCCCCCCCCC----CCccccCCCCCCCEEeCCCCcCCCCcCccc
Q 041016           81 QEVTGLDLNNLFPLDSIVTSVVLA-PIFRIRSLMTLDLSYNSMQGE----VPGTGFANLTRLTYLDLKDNNLNGSIPSQL  155 (757)
Q Consensus        81 ~~v~~l~L~~~~~~~~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l  155 (757)
                      .+++.+++++.     .+...... .+..+++|++|++++|.+++.    ++ ..+..+++|++|+|++|.+++..+..+
T Consensus         3 ~~l~~L~Ls~~-----~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l   76 (461)
T 1z7x_W            3 LDIQSLDIQCE-----ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCV   76 (461)
T ss_dssp             EEEEEEEEESC-----CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred             ccceehhhhhc-----ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence            46889999876     34333333 367889999999999998742    44 568889999999999999986555444


Q ss_pred             c-CCC----CCCEEEccCCcCCC----cccccccCCCCCCEEEccCccCCccCchhcc-----CCCCCCEEEcccccccc
Q 041016          156 F-NLR----YLEFLDLSANAIEG----KLSSRVAGLKNLKQLILDDNLIQGQIPAEIG-----NLTNLHKLSLRQNKFSG  221 (757)
Q Consensus       156 ~-~l~----~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~  221 (757)
                      . .++    +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++
T Consensus        77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            3 455    79999999999985    4588899999999999999998765454433     36789999999999986


Q ss_pred             cc----CccccCCCCCCEEEccCCcCcccCccccc-----CCCCCCEEEccCCCCCCc----cchhhhcCCCCCEEEccC
Q 041016          222 GI----PLSLLQLRKLETLDLQRNSLSGEIPEDIG-----TLANITILALSNNALTGA----IPQSIRNMTKLVTLRLDS  288 (757)
Q Consensus       222 ~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~  288 (757)
                      ..    +..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++
T Consensus       157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  236 (461)
T 1z7x_W          157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS  236 (461)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence            43    56677789999999999998765444443     367899999999998864    567778889999999999


Q ss_pred             Cccccccchh-----hhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcc
Q 041016          289 NVLSGEISTW-----LFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENEL  363 (757)
Q Consensus       289 n~l~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l  363 (757)
                      |.+++.....     +..+++|++|++++|.++....                    ..++..+..+++|++|++++|.+
T Consensus       237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC--------------------GDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--------------------HHHHHHHHHCTTCCEEECTTCCC
T ss_pred             CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH--------------------HHHHHHHhhCCCcceEECCCCCC
Confidence            9887543222     2246778888888877662111                    01455666677778888877777


Q ss_pred             cCcccccccCc------cccEEEcCCCcCCCC----CCCCccCCCCCCEEeCcCccccccCCcccCC-----CCCccEEE
Q 041016          364 EGTYPQWLSEL------NLGTVILSDNMLTGS----LPPPLFESRNLSVLVLSRNNFSGELPETIGQ-----STSVMVLM  428 (757)
Q Consensus       364 ~~~~~~~~~~~------~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~  428 (757)
                      .+..+..+...      .|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|+
T Consensus       297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  376 (461)
T 1z7x_W          297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW  376 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence            65443333221      255555555555433    2333445566666666666665443332221     45666666


Q ss_pred             ccCCcccc----cChHhhhccCCCCEEEccCCcccc
Q 041016          429 LSSNNFSG----HVPKSISNIYRLLVLDLSNNSFSG  460 (757)
Q Consensus       429 L~~n~l~~----~~~~~l~~l~~L~~L~ls~n~l~~  460 (757)
                      +++|.+++    .++..+..+++|++|++++|.+++
T Consensus       377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            66666664    556666666666666666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=6.8e-30  Score=268.22  Aligned_cols=265  Identities=23%  Similarity=0.300  Sum_probs=175.7

Q ss_pred             CCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEEC
Q 041016          398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDI  476 (757)
Q Consensus       398 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l  476 (757)
                      +++++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+| .+.  ++|++|++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            46666666666666655666666666667777666666666666666666666666666665 333 222  56666666


Q ss_pred             cCCccccCCCchhhhc--ccEEEccCCccc--cccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCc
Q 041016          477 SSNRFSGEVPSSFGVT--ILMLSLSENKFS--GQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALE  552 (757)
Q Consensus       477 ~~n~l~~~~~~~~~~~--l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  552 (757)
                      ++|++.+..+..+...  ++.|++++|.++  +..+..+..+ +|++|++++|++++ +|..+.  ++|++|++++|.++
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ  206 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence            6666655444433322  555666666554  2455666666 77888888887774 444333  67778888888877


Q ss_pred             cccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccC
Q 041016          553 GSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYS  632 (757)
Q Consensus       553 ~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  632 (757)
                      +..+..+..+++|++|++++|++.+..+..+..+++|                                          +
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------------------------~  244 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL------------------------------------------R  244 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC------------------------------------------C
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC------------------------------------------C
Confidence            7777777777888888888887776666555554443                                          7


Q ss_pred             eEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC------CCCCEEeCCCCcCc--cCCCCCccCCCCCC
Q 041016          633 LMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL------EILETLDLSHNSLS--GKIPQTFAKLQQLT  704 (757)
Q Consensus       633 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~  704 (757)
                      .|++++|+++ .+|..+..+++|++|++++|++++..+..|...      .+|+.|++++|.+.  +..|..|..+++|+
T Consensus       245 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             EEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             EEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence            7788888877 667777778888888888888877766666543      56778888888776  56667777788888


Q ss_pred             EEeCCCCc
Q 041016          705 SLYLSNNK  712 (757)
Q Consensus       705 ~L~ls~N~  712 (757)
                      .+++++|+
T Consensus       324 ~l~l~~n~  331 (332)
T 2ft3_A          324 AIQFGNYK  331 (332)
T ss_dssp             TEEC----
T ss_pred             hhhccccc
Confidence            88887774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.6e-31  Score=301.58  Aligned_cols=450  Identities=14%  Similarity=0.066  Sum_probs=233.6

Q ss_pred             cccCCCCCCCEEeCCCCcCC---CCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccC
Q 041016          129 TGFANLTRLTYLDLKDNNLN---GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGN  205 (757)
Q Consensus       129 ~~~~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  205 (757)
                      ..+..+++|++|+++++...   +.+|..++...            ...++.....+++|++|+|++|.+++..+..+..
T Consensus        67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~  134 (592)
T 3ogk_B           67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYV------------TPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK  134 (592)
T ss_dssp             HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBC------------HHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH
T ss_pred             HHHHhCCCCeEEEecCCcchhhcccccccccccc------------hHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHH
Confidence            55667777888888775321   23332222100            0001111225556666666666555444444444


Q ss_pred             -CC-CCCEEEcccccc-cc-ccCccccCCCCCCEEEccCCcCccc----CcccccCCCCCCEEEccCCCCC----Cccch
Q 041016          206 -LT-NLHKLSLRQNKF-SG-GIPLSLLQLRKLETLDLQRNSLSGE----IPEDIGTLANITILALSNNALT----GAIPQ  273 (757)
Q Consensus       206 -l~-~L~~L~L~~n~l-~~-~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~----~~~~~  273 (757)
                       ++ +|++|++++|.- .. .++....++++|++|++++|.+++.    ++..+..+++|++|++++|.++    +.++.
T Consensus       135 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~  214 (592)
T 3ogk_B          135 ARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET  214 (592)
T ss_dssp             HHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred             hccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence             22 366666666651 11 1122223566677777776665544    2233455667777777777665    23344


Q ss_pred             hhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCC
Q 041016          274 SIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTEL  353 (757)
Q Consensus       274 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L  353 (757)
                      .+.++++|++|++++|.+.+ ++..+..+++|++|+++........                     +..+..+..+++|
T Consensus       215 ~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---------------------~~~~~~l~~~~~L  272 (592)
T 3ogk_B          215 IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---------------------PEKYMNLVFPRKL  272 (592)
T ss_dssp             HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---------------------TTSSSCCCCCTTC
T ss_pred             HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch---------------------HHHHHHhhccccc
Confidence            45567777777777777664 5566677777777777652211000                     1222334555666


Q ss_pred             CEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCC-cccCCCCCccEEEccCC
Q 041016          354 TFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELP-ETIGQSTSVMVLMLSSN  432 (757)
Q Consensus       354 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n  432 (757)
                      +.++++++...                        .+|..+..+++|++|++++|.+++... ..+..+++|++|+++++
T Consensus       273 ~~L~l~~~~~~------------------------~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~  328 (592)
T 3ogk_B          273 CRLGLSYMGPN------------------------EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV  328 (592)
T ss_dssp             CEEEETTCCTT------------------------TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             cccCccccchh------------------------HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc
Confidence            66666553211                        222333344556666666655443222 23455666666666632


Q ss_pred             cccccChHhhhccCCCCEEEccC-CcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhc
Q 041016          433 NFSGHVPKSISNIYRLLVLDLSN-NSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNL  511 (757)
Q Consensus       433 ~l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~  511 (757)
                      ...+.++..+..+++|++|++++ ...    +....         ..+.+++.                     .++..+
T Consensus       329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~----~~~~~---------~~~~~~~~---------------------~~~~l~  374 (592)
T 3ogk_B          329 IGDRGLEVLAQYCKQLKRLRIERGADE----QGMED---------EEGLVSQR---------------------GLIALA  374 (592)
T ss_dssp             GHHHHHHHHHHHCTTCCEEEEECCCCS----STTSS---------TTCCCCHH---------------------HHHHHH
T ss_pred             cCHHHHHHHHHhCCCCCEEEeecCccc----ccccc---------ccCccCHH---------------------HHHHHH
Confidence            22222333345566666666652 000    00000         00111100                     111223


Q ss_pred             cCCCCCCEEeCcCCcccCcchhhccC-CCCCCEEEcc----CCcCccc-----cCcccCCCCCCCEEECcCCc--ccccC
Q 041016          512 SNLSLLQHLDLHDNNLTGEFPAFLSQ-LSSLQVLNLR----NTALEGS-----ITDGLSNLTSLQILDLSNNN--LLGKI  579 (757)
Q Consensus       512 ~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l~~~-----~~~~l~~l~~L~~L~ls~n~--l~~~~  579 (757)
                      ..+++|++|+++.|.+++..+..+.. +++|++|+++    .|.+++.     ++..+..+++|++|++++|.  +++..
T Consensus       375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            44666666666666666555555544 6667777764    4455532     22334556777777776543  33322


Q ss_pred             CcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCc-CCccccCCCCCCEE
Q 041016          580 PSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE-IPSSLGSLKGLKSL  658 (757)
Q Consensus       580 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~-~p~~l~~l~~L~~L  658 (757)
                      +..+..                                         .++.|+.|++++|++++. ++..+.++++|++|
T Consensus       455 ~~~~~~-----------------------------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L  493 (592)
T 3ogk_B          455 LSYIGQ-----------------------------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL  493 (592)
T ss_dssp             HHHHHH-----------------------------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred             HHHHHH-----------------------------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence            222211                                         134457777777777653 34445677888888


Q ss_pred             eCCCCCCCcc-CCcchhCCCCCCEEeCCCCcCccCCCCCc-cCCCCCCEEeCCCC
Q 041016          659 NLSYNQLQGN-IPSTFGNLEILETLDLSHNSLSGKIPQTF-AKLQQLTSLYLSNN  711 (757)
Q Consensus       659 ~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N  711 (757)
                      ++++|.+++. ++..+..+++|++|++++|+++......+ ..++.+....+..+
T Consensus       494 ~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          494 EMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             eccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            8888887654 33444667888888888888776533333 24566655555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=8.2e-29  Score=262.39  Aligned_cols=288  Identities=21%  Similarity=0.208  Sum_probs=195.5

Q ss_pred             CCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCE
Q 041016           60 WNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTY  139 (757)
Q Consensus        60 w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~  139 (757)
                      |.....+|.|.|+ |+..  ..               .+ ..+|..+.  ++|++|++++|.+++ ++...|.++++|++
T Consensus        23 ~~~~~~~C~~~~~-c~~~--~~---------------~l-~~iP~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~   80 (353)
T 2z80_A           23 SNQASLSCDRNGI-CKGS--SG---------------SL-NSIPSGLT--EAVKSLDLSNNRITY-ISNSDLQRCVNLQA   80 (353)
T ss_dssp             ----CCEECTTSE-EECC--ST---------------TC-SSCCTTCC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred             CCccCCCCCCCeE-eeCC--CC---------------Cc-cccccccc--ccCcEEECCCCcCcc-cCHHHhccCCCCCE
Confidence            4444577999987 7641  11               11 12333333  478899999998874 55467888999999


Q ss_pred             EeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCc-hhccCCCCCCEEEcccc-
Q 041016          140 LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIP-AEIGNLTNLHKLSLRQN-  217 (757)
Q Consensus       140 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n-  217 (757)
                      |++++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+++..+ ..+.++++|++|++++| 
T Consensus        81 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~  160 (353)
T 2z80_A           81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD  160 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             EECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence            9999998887777788888899999999888887777678888888888888888885433 36788888888888888 


Q ss_pred             ccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccch
Q 041016          218 KFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEIST  297 (757)
Q Consensus       218 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  297 (757)
                      .+....+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+.
T Consensus       161 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  240 (353)
T 2z80_A          161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS  240 (353)
T ss_dssp             SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred             cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence            46655567788888888888888888877777888888888888888887644334445577777777777777654433


Q ss_pred             hhh---ccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCc
Q 041016          298 WLF---DLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL  374 (757)
Q Consensus       298 ~l~---~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  374 (757)
                      .+.   ....++.++++++.+.                   ++.+. .+|.++..+++|+.|++++|+++.         
T Consensus       241 ~l~~~~~~~~l~~l~L~~~~l~-------------------~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~---------  291 (353)
T 2z80_A          241 ELSTGETNSLIKKFTFRNVKIT-------------------DESLF-QVMKLLNQISGLLELEFSRNQLKS---------  291 (353)
T ss_dssp             ------CCCCCCEEEEESCBCC-------------------HHHHH-HHHHHHHTCTTCCEEECCSSCCCC---------
T ss_pred             ccccccccchhhcccccccccc-------------------Ccchh-hhHHHHhcccCCCEEECCCCCCCc---------
Confidence            222   2333444444444332                   11111 356667777777777777777762         


Q ss_pred             cccEEEcCCCcCCCCCCCC-ccCCCCCCEEeCcCcccccc
Q 041016          375 NLGTVILSDNMLTGSLPPP-LFESRNLSVLVLSRNNFSGE  413 (757)
Q Consensus       375 ~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~L~~n~l~~~  413 (757)
                                     +|.. +..+++|++|++++|.+.+.
T Consensus       292 ---------------i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          292 ---------------VPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             ---------------CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ---------------cCHHHHhcCCCCCEEEeeCCCccCc
Confidence                           2222 34556677777777766544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=6.3e-29  Score=257.77  Aligned_cols=252  Identities=27%  Similarity=0.324  Sum_probs=198.0

Q ss_pred             cccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCc
Q 041016           67 CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN  146 (757)
Q Consensus        67 c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~  146 (757)
                      |.|.+|.|+..+.+                    .+|..+  .++|++|++++|.++ .+|...|+++++|++|++++|.
T Consensus         7 C~~~~l~c~~~~l~--------------------~ip~~~--~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~   63 (306)
T 2z66_A            7 CSGTEIRCNSKGLT--------------------SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNG   63 (306)
T ss_dssp             EETTEEECCSSCCS--------------------SCCSCC--CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred             eCCCEEEcCCCCcc--------------------cCCCCC--CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCc
Confidence            89999999863211                    122222  258899999999997 6775678999999999999999


Q ss_pred             CCC--CcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCc-hhccCCCCCCEEEcccccccccc
Q 041016          147 LNG--SIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIP-AEIGNLTNLHKLSLRQNKFSGGI  223 (757)
Q Consensus       147 l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~  223 (757)
                      ++.  ..|..+..+++|++|++++|.+.. ++..+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus        64 l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           64 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             CCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             cCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence            873  336777789999999999998874 56668889999999999998886554 57888899999999999888888


Q ss_pred             CccccCCCCCCEEEccCCcCcc-cCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhcc
Q 041016          224 PLSLLQLRKLETLDLQRNSLSG-EIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDL  302 (757)
Q Consensus       224 ~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  302 (757)
                      +..+.++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  222 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  222 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred             hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence            8888888899999999888876 567788888888888888888887777888888888888888888887666677778


Q ss_pred             CCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCC-CCCEEEccCCcccCc
Q 041016          303 QGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT-ELTFLDLSENELEGT  366 (757)
Q Consensus       303 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~  366 (757)
                      ++|++|++++|.++                        +..|..+..++ +|++|++++|.+.+.
T Consensus       223 ~~L~~L~L~~N~l~------------------------~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          223 NSLQVLDYSLNHIM------------------------TSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             TTCCEEECTTSCCC------------------------BCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             ccCCEeECCCCCCc------------------------ccCHHHHHhhhccCCEEEccCCCeecc
Confidence            88888888888776                        45555555553 667777777666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1e-27  Score=248.64  Aligned_cols=248  Identities=26%  Similarity=0.324  Sum_probs=172.9

Q ss_pred             EEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCccccc--ChHhhhccCCCCEEEccC
Q 041016          378 TVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH--VPKSISNIYRLLVLDLSN  455 (757)
Q Consensus       378 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ls~  455 (757)
                      .++.+++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++..  .+..+..+++|++|++++
T Consensus        11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            3444444443 3444332  5778888888887755555567778888888888877632  355666667777776666


Q ss_pred             CcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcch-hh
Q 041016          456 NSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP-AF  534 (757)
Q Consensus       456 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~  534 (757)
                      |.+..                                              +|..+..+++|++|++++|++++..+ ..
T Consensus        88 n~i~~----------------------------------------------l~~~~~~l~~L~~L~l~~n~l~~~~~~~~  121 (306)
T 2z66_A           88 NGVIT----------------------------------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSV  121 (306)
T ss_dssp             CSEEE----------------------------------------------EEEEEETCTTCCEEECTTSEEESSTTTTT
T ss_pred             Ccccc----------------------------------------------ChhhcCCCCCCCEEECCCCcccccccchh
Confidence            65542                                              23345566777777777777765444 45


Q ss_pred             ccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccc-cCCcccccccccccCCCCCCCCCcccCCccccceeE
Q 041016          535 LSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG-KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI  613 (757)
Q Consensus       535 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~  613 (757)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|                        
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L------------------------  177 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------------------------  177 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC------------------------
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC------------------------
Confidence            6677777777777777777677777777777777777777765 455555544433                        


Q ss_pred             eeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCC
Q 041016          614 VNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI  693 (757)
Q Consensus       614 ~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  693 (757)
                                        +.|++++|++++..|..|..+++|++|++++|++++..+..|..+++|++|++++|++++..
T Consensus       178 ------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          178 ------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             ------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred             ------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence                              77777777777777777888888888888888888777777888888888888888888888


Q ss_pred             CCCccCCC-CCCEEeCCCCcceec
Q 041016          694 PQTFAKLQ-QLTSLYLSNNKLSGR  716 (757)
Q Consensus       694 p~~l~~l~-~L~~L~ls~N~l~g~  716 (757)
                      |..+..++ +|++|++++|++++.
T Consensus       240 ~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          240 KQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             SSSCCCCCTTCCEEECTTCCEECS
T ss_pred             HHHHHhhhccCCEEEccCCCeecc
Confidence            87787774 788888888888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=2e-31  Score=303.78  Aligned_cols=237  Identities=16%  Similarity=0.130  Sum_probs=148.4

Q ss_pred             CCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCC---CCCCccccC---------
Q 041016           65 DCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQ---GEVPGTGFA---------  132 (757)
Q Consensus        65 ~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~i~~~~~~---------  132 (757)
                      -|++|.++.+..    .  ..+.+...      .....+..+.++++|++|+++++...   +.+| ..++         
T Consensus        40 vck~W~~~~~~~----~--~~l~~~~~------~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~~~~~~~l~~  106 (592)
T 3ogk_B           40 VCRRWFKIDSET----R--EHVTMALC------YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP-ENWGGYVTPWVTE  106 (592)
T ss_dssp             SCHHHHHHHHHH----C--CEEEESCG------GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC-TTSCCBCHHHHHH
T ss_pred             HhHHHHHhhhcc----c--cEEEEeec------cccChHHHHHhCCCCeEEEecCCcchhhccccc-ccccccchHHHHH
Confidence            355899886532    1  12223321      22233445678899999999886431   2233 2222         


Q ss_pred             ---CCCCCCEEeCCCCcCCCCcCccccCC-C-CCCEEEccCCcC-CC-cccccccCCCCCCEEEccCccCCcc----Cch
Q 041016          133 ---NLTRLTYLDLKDNNLNGSIPSQLFNL-R-YLEFLDLSANAI-EG-KLSSRVAGLKNLKQLILDDNLIQGQ----IPA  201 (757)
Q Consensus       133 ---~l~~L~~L~Ls~n~l~~~~p~~l~~l-~-~L~~L~Ls~n~l-~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~p~  201 (757)
                         .+++|++|+|++|.+++..+..+... + +|++|+|++|.- .. ..+....++++|++|+|++|.+++.    ++.
T Consensus       107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~  186 (592)
T 3ogk_B          107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE  186 (592)
T ss_dssp             HHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred             HHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence               67888888888888776666666553 3 488888887761 11 1122234678888888888877655    333


Q ss_pred             hccCCCCCCEEEccccccc----cccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC---Cccchh
Q 041016          202 EIGNLTNLHKLSLRQNKFS----GGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT---GAIPQS  274 (757)
Q Consensus       202 ~~~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~  274 (757)
                      .+..+++|++|++++|.++    +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++.....   +..+..
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  265 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMN  265 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence            4556778888888888776    2334445667788888888877764 5566777788888887653322   233345


Q ss_pred             hhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          275 IRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       275 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      +..+++|+.++++++. .+.++..+..+++|++|++++|.++
T Consensus       266 l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~  306 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLE  306 (592)
T ss_dssp             CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCC
T ss_pred             hhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCC
Confidence            5666777777777643 2345666666777777777777654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.8e-27  Score=248.37  Aligned_cols=227  Identities=19%  Similarity=0.265  Sum_probs=192.3

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016          108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ  187 (757)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  187 (757)
                      ..+.+++|+|++|.++ .+| ..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred             cccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence            4578999999999998 788 66888999999999999999 88999999999999999999998 66888999999999


Q ss_pred             EEccCccCCccCchhccC---------CCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCC
Q 041016          188 LILDDNLIQGQIPAEIGN---------LTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT  258 (757)
Q Consensus       188 L~L~~n~l~~~~p~~~~~---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  258 (757)
                      |++++|.+.+.+|..+..         +++|++|++++|.++ .+|..+.++++|++|++++|.+++ +|..+..+++|+
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~  232 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence            999998888888887654         888888888888888 777788888888888888888884 556788888888


Q ss_pred             EEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCcc
Q 041016          259 ILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCS  338 (757)
Q Consensus       259 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~  338 (757)
                      +|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.                      
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~----------------------  290 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL----------------------  290 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC----------------------
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch----------------------
Confidence            8888888888888888888888888888888888888888888888888877777766                      


Q ss_pred             CccCcchhccCCCCCCEEEccCCccc
Q 041016          339 VRGSIPLWLSTQTELTFLDLSENELE  364 (757)
Q Consensus       339 ~~~~~~~~l~~~~~L~~L~l~~n~l~  364 (757)
                        +.+|.++..+++|+.+++..+.+.
T Consensus       291 --~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          291 --SRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             --CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             --hhccHHHhhccCceEEeCCHHHHH
Confidence              788888888888888888766554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.1e-28  Score=256.99  Aligned_cols=289  Identities=18%  Similarity=0.167  Sum_probs=210.6

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCC
Q 041016          107 FRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLK  186 (757)
Q Consensus       107 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  186 (757)
                      ..++...+.+++++.++ .+| ..+.  ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|+
T Consensus        28 ~~C~~~~~c~~~~~~l~-~iP-~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLN-SIP-SGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE  103 (353)
T ss_dssp             CEECTTSEEECCSTTCS-SCC-TTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCeEeeCCCCCcc-ccc-cccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence            34555667899999987 677 3333  5899999999999976666899999999999999999988888899999999


Q ss_pred             EEEccCccCCccCchhccCCCCCCEEEccccccccccC-ccccCCCCCCEEEccCC-cCcccCcccccCCCCCCEEEccC
Q 041016          187 QLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIP-LSLLQLRKLETLDLQRN-SLSGEIPEDIGTLANITILALSN  264 (757)
Q Consensus       187 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~  264 (757)
                      +|++++|.+++..+..++++++|++|++++|.+++..+ ..+.++++|++|++++| .+++..+..+..+++|++|++++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            99999999986666668899999999999999885443 47888899999999988 46666677788888888888888


Q ss_pred             CCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016          265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP  344 (757)
Q Consensus       265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  344 (757)
                      |.+.+..|..+.++++|++|++++|.++......+..+++|++|++++|.++......+                     
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---------------------  242 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL---------------------  242 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc---------------------
Confidence            88887778888888888888888888764444445557778888888777663211100                     


Q ss_pred             hhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCc
Q 041016          345 LWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSV  424 (757)
Q Consensus       345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L  424 (757)
                      ......+.++.++++++.+.+..                  +. .+|..+..+++|++|++++|+++...+..|..+++|
T Consensus       243 ~~~~~~~~l~~l~L~~~~l~~~~------------------l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L  303 (353)
T 2z80_A          243 STGETNSLIKKFTFRNVKITDES------------------LF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL  303 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHH------------------HH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccccchhhccccccccccCcc------------------hh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCC
Confidence            01123445566666665554311                  00 233445566778888888888774333335777788


Q ss_pred             cEEEccCCcccccCh
Q 041016          425 MVLMLSSNNFSGHVP  439 (757)
Q Consensus       425 ~~L~L~~n~l~~~~~  439 (757)
                      ++|++++|.+.+..|
T Consensus       304 ~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          304 QKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CEEECCSSCBCCCHH
T ss_pred             CEEEeeCCCccCcCC
Confidence            888888887776544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=2.6e-27  Score=242.79  Aligned_cols=207  Identities=28%  Similarity=0.269  Sum_probs=133.3

Q ss_pred             CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCc-CCCcccccccCCCCCCE
Q 041016          109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA-IEGKLSSRVAGLKNLKQ  187 (757)
Q Consensus       109 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  187 (757)
                      .++|++|++++|.+++ ++...|.++++|++|++++|.+++..|..|.++++|++|++++|. +....+..+.++++|++
T Consensus        31 ~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            3567777777777663 333566677777777777777766556666777777777777775 65555666666667777


Q ss_pred             EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016          188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL  267 (757)
Q Consensus       188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  267 (757)
                      |++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            77777766666566666666666666666666655555566666666666666666655555566666666666666666


Q ss_pred             CCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          268 TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      ++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            6555666666666666666666666554455555666666666665554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2.7e-26  Score=251.49  Aligned_cols=247  Identities=21%  Similarity=0.243  Sum_probs=159.0

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEcc
Q 041016          112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILD  191 (757)
Q Consensus       112 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  191 (757)
                      .+.++.++..++ .+| ..+.  +++++|+|++|.+++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus        56 ~~~v~c~~~~l~-~iP-~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVP-QGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccC-CCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            455666666665 455 2222  567777777777776666667777777777777777776666667777777777777


Q ss_pred             CccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCC-cCcccCcccccCCCCCCEEEccCCCCCCc
Q 041016          192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN-SLSGEIPEDIGTLANITILALSNNALTGA  270 (757)
Q Consensus       192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  270 (757)
                      +|.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++| .+....+..+..+++|++|++++|.+++.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            77776555556667777777777777776555556667777777777763 34433334566677777777777776643


Q ss_pred             cchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCC
Q 041016          271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ  350 (757)
Q Consensus       271 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  350 (757)
                       | .+..+++|++|++++|.+++..+..+..+++|+.|++++|.++......+.....|++|++++|++++..+..+..+
T Consensus       212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence             2 46666777777777777776666667777777777777776664444444444445555555555555555556666


Q ss_pred             CCCCEEEccCCccc
Q 041016          351 TELTFLDLSENELE  364 (757)
Q Consensus       351 ~~L~~L~l~~n~l~  364 (757)
                      ++|+.|++++|.+.
T Consensus       290 ~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          290 RYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEccCCCcC
Confidence            67777777766654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5e-26  Score=248.41  Aligned_cols=244  Identities=25%  Similarity=0.277  Sum_probs=138.4

Q ss_pred             EEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcc
Q 041016          379 VILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSF  458 (757)
Q Consensus       379 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l  458 (757)
                      ++..+..++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus        48 v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           48 VICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             EECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             EEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            333333333 3444443  5677788888887777777777778888888888877777777777777777777777666


Q ss_pred             cccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCC
Q 041016          459 SGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQL  538 (757)
Q Consensus       459 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l  538 (757)
                      +...+                                             ..|..+++|++|++++|.+.+..+..|..+
T Consensus       125 ~~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  159 (440)
T 3zyj_A          125 TTIPN---------------------------------------------GAFVYLSKLKELWLRNNPIESIPSYAFNRI  159 (440)
T ss_dssp             SSCCT---------------------------------------------TTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred             CeeCH---------------------------------------------hHhhccccCceeeCCCCcccccCHHHhhhC
Confidence            53332                                             233344444444444444444334444444


Q ss_pred             CCCCEEEccCCcCccc-cCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeec
Q 041016          539 SSLQVLNLRNTALEGS-ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWK  617 (757)
Q Consensus       539 ~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  617 (757)
                      ++|++|++++|...+. .+..|..+++|++|++++|.++. +|. +..                                
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~--------------------------------  205 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTP--------------------------------  205 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC-CTT--------------------------------
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc-cCC--------------------------------
Confidence            4555555544322222 22344555555555555555441 121 111                                


Q ss_pred             cCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCc
Q 041016          618 NSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTF  697 (757)
Q Consensus       618 ~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  697 (757)
                                ++.|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|
T Consensus       206 ----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          206 ----------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             ----------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             ----------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence                      2233555555555555555566666666666666666666666666666666666666666665555556


Q ss_pred             cCCCCCCEEeCCCCcce
Q 041016          698 AKLQQLTSLYLSNNKLS  714 (757)
Q Consensus       698 ~~l~~L~~L~ls~N~l~  714 (757)
                      ..+++|++|++++|++.
T Consensus       276 ~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          276 TPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             SSCTTCCEEECCSSCEE
T ss_pred             ccccCCCEEEcCCCCcc
Confidence            66666666666666653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=9.7e-27  Score=238.56  Aligned_cols=239  Identities=24%  Similarity=0.215  Sum_probs=141.3

Q ss_pred             CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCcc-CCccCchhccCCCCCCEEE
Q 041016          135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQIPAEIGNLTNLHKLS  213 (757)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~  213 (757)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|. +....|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            566666666666665555556666666666666666666556666666666666666665 5544455666666666666


Q ss_pred             ccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccc
Q 041016          214 LRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG  293 (757)
Q Consensus       214 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  293 (757)
                      +++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            66666665555566666666666666666665555556666666666666666665444456666666666666666666


Q ss_pred             ccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccC
Q 041016          294 EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSE  373 (757)
Q Consensus       294 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  373 (757)
                      ..+..+..+++|++|++++|.++......+.....|++|++++|.+....+.. .-...++.+..+.+.+....|..+.+
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence            55666666666666666666666555545555566666666666655332210 00011222334455555555555544


Q ss_pred             c
Q 041016          374 L  374 (757)
Q Consensus       374 ~  374 (757)
                      .
T Consensus       271 ~  271 (285)
T 1ozn_A          271 R  271 (285)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.2e-26  Score=249.97  Aligned_cols=229  Identities=22%  Similarity=0.190  Sum_probs=194.6

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +++++|+|++|.+++..+ ..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            578899999999886555 7888999999999999999887788888999999999999999888778888899999999


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccc-cccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNK-FSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT  268 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  268 (757)
                      +++|.++...+..|.++++|++|++++|. +....+..|.++++|++|++++|.+++. | .+..+++|++|++++|.++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence            99999887777788899999999998854 4434445688889999999999998754 3 5788889999999999998


Q ss_pred             CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCcc
Q 041016          269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG  341 (757)
Q Consensus       269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~  341 (757)
                      +..|..|.++++|++|++++|.+++..+..+..+++|+.|++++|+++......+.....|++|++++|.+..
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            8888889999999999999999988888888889999999999999988887777888889999999887653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=245.87  Aligned_cols=228  Identities=23%  Similarity=0.225  Sum_probs=160.6

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +++++|+|++|.+++..+ ..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+++...+..|.++++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            567778888877764443 6677777788888887777766667777777777777777777766666777777777777


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccc-cccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNK-FSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT  268 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  268 (757)
                      +++|.++...+..|.++++|++|++++|. +....+..|.++++|++|++++|.++. +| .+..+++|++|++++|.++
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCC
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccC
Confidence            77777776666677777777777777743 333333456777777777777777763 33 4666777777777777777


Q ss_pred             CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016          269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS  348 (757)
Q Consensus       269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  348 (757)
                      +..|..|.++++|++|++++|.+++..+..+..+++|++|++++|+++                        +..+..+.
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------~~~~~~~~  276 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT------------------------LLPHDLFT  276 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC------------------------CCCTTTTS
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC------------------------ccChhHhc
Confidence            666667777777777777777776666666666666666666666665                        45555666


Q ss_pred             CCCCCCEEEccCCccc
Q 041016          349 TQTELTFLDLSENELE  364 (757)
Q Consensus       349 ~~~~L~~L~l~~n~l~  364 (757)
                      .+++|+.|++++|.+.
T Consensus       277 ~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          277 PLHHLERIHLHHNPWN  292 (440)
T ss_dssp             SCTTCCEEECCSSCEE
T ss_pred             cccCCCEEEcCCCCcc
Confidence            7777777777777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=3e-26  Score=257.15  Aligned_cols=298  Identities=24%  Similarity=0.286  Sum_probs=177.1

Q ss_pred             CCCCCCCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCC
Q 041016           55 GGLETWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANL  134 (757)
Q Consensus        55 ~~~~~w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l  134 (757)
                      ..+..|....+||.|+|..|.....                         ..+....+++|++++|.++ .+| ..+.  
T Consensus        10 ~~w~~W~~~~~~~~~~~r~~~~~~~-------------------------~~c~~~~l~~L~ls~n~L~-~lp-~~l~--   60 (622)
T 3g06_A           10 AVWSAWRRAAPAEESRGRAAVVQKM-------------------------RACLNNGNAVLNVGESGLT-TLP-DCLP--   60 (622)
T ss_dssp             CHHHHHHHTCCGGGHHHHHHHHHHH-------------------------HHHHHHCCCEEECCSSCCS-CCC-SCCC--
T ss_pred             HHHHHHHhcCCcchhccccccCccc-------------------------ccccCCCCcEEEecCCCcC-ccC-hhhC--
Confidence            3456787777899998765432000                         0001123566677777766 566 3333  


Q ss_pred             CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEc
Q 041016          135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSL  214 (757)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  214 (757)
                      ++|++|++++|.++ .+|.   .+++|++|+|++|.++++. .   .+++|++|++++|.+++ +|.   .+++|++|++
T Consensus        61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCC-C---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCC-C---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence            67777777777776 4454   4567777777777766432 2   55667777777776664 333   4566777777


Q ss_pred             cccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccc
Q 041016          215 RQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE  294 (757)
Q Consensus       215 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  294 (757)
                      ++|.+++ +|..   +++|++|++++|.+++ +|.   .+.+|+.|++++|.+++ +|   ..+++|+.|++++|.+++ 
T Consensus       129 ~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-  195 (622)
T 3g06_A          129 FGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-  195 (622)
T ss_dssp             CSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred             CCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-
Confidence            7777663 4432   3667777777776664 232   23566667777776664 33   334666666666666653 


Q ss_pred             cchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCc
Q 041016          295 ISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSEL  374 (757)
Q Consensus       295 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~  374 (757)
                      +|.   ..++|+.|++++|.++.                         +|.   .+++|+.|++++|++++ +|   ..+
T Consensus       196 l~~---~~~~L~~L~L~~N~l~~-------------------------l~~---~~~~L~~L~Ls~N~L~~-lp---~~l  240 (622)
T 3g06_A          196 LPT---LPSELYKLWAYNNRLTS-------------------------LPA---LPSGLKELIVSGNRLTS-LP---VLP  240 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCCSS-------------------------CCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred             CCC---ccchhhEEECcCCcccc-------------------------cCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence            222   23556666666665552                         221   12455555555555553 22   111


Q ss_pred             c-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccC
Q 041016          375 N-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIY  446 (757)
Q Consensus       375 ~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  446 (757)
                      + |+.|++++|+++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus       241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            2 555555555554 3343   4567888888888887 5577777888888888888888877777776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.3e-28  Score=253.30  Aligned_cols=267  Identities=21%  Similarity=0.206  Sum_probs=191.8

Q ss_pred             CEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCc
Q 041016          401 SVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNR  480 (757)
Q Consensus       401 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~  480 (757)
                      +..+++.+.+.......+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++|+
T Consensus        13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~   91 (317)
T 3o53_A           13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY   91 (317)
T ss_dssp             EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE
T ss_pred             eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc
Confidence            344455555544433444445566666666666666666666666666666666666665443 5666666666666666


Q ss_pred             cccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCccc-
Q 041016          481 FSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGL-  559 (757)
Q Consensus       481 l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l-  559 (757)
                      +++..+.   ..++.|++++|++++..+.   .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ 
T Consensus        92 l~~l~~~---~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A           92 VQELLVG---PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             EEEEEEC---TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             cccccCC---CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            6543322   3477777777777766544   35778899999999888777788888899999999999887777666 


Q ss_pred             CCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCC
Q 041016          560 SNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNN  639 (757)
Q Consensus       560 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n  639 (757)
                      ..+++|++|++++|.+++..+..  .                                          ++.|+.|++++|
T Consensus       166 ~~l~~L~~L~L~~N~l~~~~~~~--~------------------------------------------l~~L~~L~Ls~N  201 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDVKGQV--V------------------------------------------FAKLKTLDLSSN  201 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEEECCC--C------------------------------------------CTTCCEEECCSS
T ss_pred             hccCcCCEEECCCCcCccccccc--c------------------------------------------cccCCEEECCCC
Confidence            46888999999999887542111  1                                          445688999999


Q ss_pred             CCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCc-cCCCCCccCCCCCCEEeCC-CCcceecC
Q 041016          640 QLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS-GKIPQTFAKLQQLTSLYLS-NNKLSGRI  717 (757)
Q Consensus       640 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls-~N~l~g~i  717 (757)
                      ++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|++++++ .+.+.|..
T Consensus       202 ~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          202 KLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             CCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred             cCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCc
Confidence            9985 4555888999999999999998 46777888999999999999998 6777888889999999998 44677776


Q ss_pred             CCC
Q 041016          718 PES  720 (757)
Q Consensus       718 P~~  720 (757)
                      |..
T Consensus       280 ~~~  282 (317)
T 3o53_A          280 EEE  282 (317)
T ss_dssp             SCC
T ss_pred             hhc
Confidence            654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=8.2e-28  Score=249.68  Aligned_cols=245  Identities=22%  Similarity=0.174  Sum_probs=153.7

Q ss_pred             CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCC-CCcCcccc-------CCCCCCEEEccCCcCCCcccccc-
Q 041016          109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLN-GSIPSQLF-------NLRYLEFLDLSANAIEGKLSSRV-  179 (757)
Q Consensus       109 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~-  179 (757)
                      .++|++|++++|.+  .+| ..+...  |++|+|++|.++ ..+|..+.       ++++|++|++++|.+++..|..+ 
T Consensus        42 ~~~L~~l~l~~n~l--~~p-~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADL-GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEECTTHHHHCCTT--CCC-HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             CCCceeEeeccccc--ccH-HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34566677777777  566 333332  777777777773 44555554       67777777777777776666665 


Q ss_pred             -cCCCCCCEEEccCccCCccCchhccCC-----CCCCEEEccccccccccCccccCCCCCCEEEccCCcCccc--Ccccc
Q 041016          180 -AGLKNLKQLILDDNLIQGQIPAEIGNL-----TNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGE--IPEDI  251 (757)
Q Consensus       180 -~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l  251 (757)
                       ..+++|++|++++|.+++. |..++.+     ++|++|++++|++.+..|..++++++|++|++++|++.+.  .+..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             7777777777777777765 6666655     7777777777777766667777777777777777776554  22333


Q ss_pred             --cCCCCCCEEEccCCCCCCc--cc-hhhhcCCCCCEEEccCCccccccc-hhhhccCCCcEEEccCCCCcCCCcccccC
Q 041016          252 --GTLANITILALSNNALTGA--IP-QSIRNMTKLVTLRLDSNVLSGEIS-TWLFDLQGMKSLYLGGNKLKWNDNVSIVP  325 (757)
Q Consensus       252 --~~l~~L~~L~L~~n~l~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  325 (757)
                        ..+++|++|++++|.+++.  ++ ..+.++++|++|++++|.+++..| ..+..+++|++|++++|.++.++...+  
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--
Confidence              6677777777777777631  12 334566777777777777776553 334456677777777777663322111  


Q ss_pred             CcccceeecCCccCccCcchhccCCCCCCEEEccCCccc
Q 041016          326 KCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELE  364 (757)
Q Consensus       326 ~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~  364 (757)
                       ..|++|++++|++++. |. +..+++|++|++++|+++
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence             3445555555554433 33 455555555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.7e-25  Score=227.05  Aligned_cols=217  Identities=26%  Similarity=0.308  Sum_probs=127.3

Q ss_pred             CCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCC
Q 041016           64 SDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLK  143 (757)
Q Consensus        64 ~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls  143 (757)
                      .++|.|.|+.|..   ...++.+++++.     .+.. +|..+.  +++++|++++|.++ .++...|.++++|++|+++
T Consensus         2 ~~~C~~~~~~C~c---~~~~~~l~~~~~-----~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~   69 (270)
T 2o6q_A            2 EALCKKDGGVCSC---NNNKNSVDCSSK-----KLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLN   69 (270)
T ss_dssp             CCCBGGGTCSBEE---ETTTTEEECTTS-----CCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECC
T ss_pred             CccCCCCCCCCEe---CCCCCEEEccCC-----CCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECC
Confidence            4789999999975   233455666654     2221 232222  45666666666665 3333556666666666666


Q ss_pred             CCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEcccccccccc
Q 041016          144 DNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGI  223 (757)
Q Consensus       144 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  223 (757)
                      +|.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus        70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  149 (270)
T 2o6q_A           70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP  149 (270)
T ss_dssp             SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence            66666444444556666666666666666555555666666666666666666555555666666666666666665444


Q ss_pred             CccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccc
Q 041016          224 PLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS  292 (757)
Q Consensus       224 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  292 (757)
                      +..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            444555666666666666665544445555556666666666555444444555555555555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.6e-27  Score=244.81  Aligned_cols=251  Identities=22%  Similarity=0.273  Sum_probs=167.1

Q ss_pred             cccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCC-Cccccccc-------CCCCCCEEEccCccCCccCc
Q 041016          129 TGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIE-GKLSSRVA-------GLKNLKQLILDDNLIQGQIP  200 (757)
Q Consensus       129 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p  200 (757)
                      ..++..++|++|++++|.+  .+|..+...  |++|++++|.+. ...+..+.       ++++|++|++++|.+++.+|
T Consensus        37 ~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           37 ELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            3456678899999999998  677776654  888888888874 34444444       67888888888888887777


Q ss_pred             hhc--cCCCCCCEEEccccccccccCccccCC-----CCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCc--c
Q 041016          201 AEI--GNLTNLHKLSLRQNKFSGGIPLSLLQL-----RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGA--I  271 (757)
Q Consensus       201 ~~~--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~  271 (757)
                      ..+  ..+++|++|++++|.+++. |..+..+     ++|++|++++|++++..+..++.+++|++|++++|++.+.  .
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  191 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL  191 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence            765  7788888888888888766 6666665     7788888888888777767777788888888888776654  2


Q ss_pred             chhh--hcCCCCCEEEccCCcccc--ccc-hhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc-h
Q 041016          272 PQSI--RNMTKLVTLRLDSNVLSG--EIS-TWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP-L  345 (757)
Q Consensus       272 ~~~l--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~  345 (757)
                      +..+  .++++|++|++++|.+++  .++ ..+..+++|++|++++|.++                        +..| .
T Consensus       192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~~~~~~  247 (312)
T 1wwl_A          192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR------------------------DAAGAP  247 (312)
T ss_dssp             HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC------------------------SSCCCS
T ss_pred             HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC------------------------cccchh
Confidence            3333  667777777777777662  112 22345566666666666655                        3332 2


Q ss_pred             hccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCcc
Q 041016          346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVM  425 (757)
Q Consensus       346 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~  425 (757)
                      .+..+++|++|++++|+++ .+                       |..+.  ++|++|++++|++++. |. +..+++|+
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~-~i-----------------------p~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~  299 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLK-QV-----------------------PKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVG  299 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCS-SC-----------------------CSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEE
T ss_pred             hhhhcCCCCEEECCCCccC-hh-----------------------hhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCC
Confidence            3444566666666666665 33                       33333  4566666666666544 33 55666666


Q ss_pred             EEEccCCcccc
Q 041016          426 VLMLSSNNFSG  436 (757)
Q Consensus       426 ~L~L~~n~l~~  436 (757)
                      +|++++|++++
T Consensus       300 ~L~L~~N~l~~  310 (312)
T 1wwl_A          300 NLSLKGNPFLD  310 (312)
T ss_dssp             EEECTTCTTTC
T ss_pred             EEeccCCCCCC
Confidence            66666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.5e-28  Score=278.23  Aligned_cols=287  Identities=17%  Similarity=0.165  Sum_probs=145.7

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCC---CcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNG---SIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +.++++.+..  ..|...+.++++|++|+++++....   ..|..++.            .....++.....+++|++|+
T Consensus        46 ~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~------------~~~~~l~~l~~~~~~L~~L~  111 (594)
T 2p1m_B           46 RKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGG------------YVYPWIEAMSSSYTWLEEIR  111 (594)
T ss_dssp             CEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCC------------BCHHHHHHHHHHCTTCCEEE
T ss_pred             eEEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccc------------hhhHHHHHHHHhCCCCCeEE
Confidence            3555554432  3343556777888888888875321   11111100            00000111123455566666


Q ss_pred             ccCccCCccCchhcc-CCCCCCEEEcccc-ccccc-cCccccCCCCCCEEEccCCcCcccCccccc----CCCCCCEEEc
Q 041016          190 LDDNLIQGQIPAEIG-NLTNLHKLSLRQN-KFSGG-IPLSLLQLRKLETLDLQRNSLSGEIPEDIG----TLANITILAL  262 (757)
Q Consensus       190 L~~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l~~L~~L~L  262 (757)
                      +++|.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+.    .+++|++|++
T Consensus       112 L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l  191 (594)
T 2p1m_B          112 LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI  191 (594)
T ss_dssp             EESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEEC
T ss_pred             eeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEe
Confidence            666555544444443 4566666666666 33321 233333566666666666665544333332    4557777777


Q ss_pred             cCCC--CCC-ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccC
Q 041016          263 SNNA--LTG-AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSV  339 (757)
Q Consensus       263 ~~n~--l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~  339 (757)
                      ++|.  +.. .++..+..+++|++|++++|...+.++..+..+++|++|+++.+...                 +..+.+
T Consensus       192 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-----------------~~~~~~  254 (594)
T 2p1m_B          192 SCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE-----------------VRPDVY  254 (594)
T ss_dssp             TTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC-----------------CCHHHH
T ss_pred             cccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc-----------------cchhhH
Confidence            7665  221 11222345677888887777333336666777777777776654321                 111222


Q ss_pred             ccCcchhccCCCCCCEEE-ccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccC-Ccc
Q 041016          340 RGSIPLWLSTQTELTFLD-LSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGEL-PET  417 (757)
Q Consensus       340 ~~~~~~~l~~~~~L~~L~-l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~-~~~  417 (757)
                      .+ ++..+.++++|+.+. +..... +                       .++..+..+++|++|++++|.+++.. ...
T Consensus       255 ~~-l~~~l~~~~~L~~Ls~~~~~~~-~-----------------------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~  309 (594)
T 2p1m_B          255 SG-LSVALSGCKELRCLSGFWDAVP-A-----------------------YLPAVYSVCSRLTTLNLSYATVQSYDLVKL  309 (594)
T ss_dssp             HH-HHHHHHTCTTCCEEECCBTCCG-G-----------------------GGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred             HH-HHHHHhcCCCcccccCCcccch-h-----------------------hHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence            22 344567777777772 322111 0                       11222224466677777666654332 222


Q ss_pred             cCCCCCccEEEccCCccccc-ChHhhhccCCCCEEEccCC
Q 041016          418 IGQSTSVMVLMLSSNNFSGH-VPKSISNIYRLLVLDLSNN  456 (757)
Q Consensus       418 ~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ls~n  456 (757)
                      +..+++|++|++++| +.+. ++.....+++|++|+++++
T Consensus       310 ~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~  348 (594)
T 2p1m_B          310 LCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPS  348 (594)
T ss_dssp             HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECS
T ss_pred             HhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecC
Confidence            445677777777766 3322 2222334677777776543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=5.5e-29  Score=283.72  Aligned_cols=237  Identities=15%  Similarity=0.147  Sum_probs=123.7

Q ss_pred             CCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCC---Cc-----------cc
Q 041016           65 DCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEV---PG-----------TG  130 (757)
Q Consensus        65 ~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i---~~-----------~~  130 (757)
                      -|++|.++..      .....++++....      ......+.++++|++|+++++.....+   |.           ..
T Consensus        33 vck~W~~~~~------~~~~~l~~~~~~~------~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l  100 (594)
T 2p1m_B           33 VCKSWYEIER------WCRRKVFIGNCYA------VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAM  100 (594)
T ss_dssp             SCHHHHHHHH------HHCCEEEESSTTS------SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH
T ss_pred             HHHHHHHhhh------hhceEEeeccccc------cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHH
Confidence            4567988832      2234556654311      111234668899999999987643221   10           11


Q ss_pred             cCCCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCC-cCCCc-ccccccCCCCCCEEEccCccCCccCchhcc---
Q 041016          131 FANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSAN-AIEGK-LSSRVAGLKNLKQLILDDNLIQGQIPAEIG---  204 (757)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~---  204 (757)
                      ...+++|++|+|++|.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+.   
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            23566777777777777665555554 5677777777776 33322 233334666777777777766544433332   


Q ss_pred             -CCCCCCEEEccccc--cccc-cCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCC-------CCCccch
Q 041016          205 -NLTNLHKLSLRQNK--FSGG-IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA-------LTGAIPQ  273 (757)
Q Consensus       205 -~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~  273 (757)
                       .+++|++|++++|.  +... ++..+.++++|++|++++|...+.++..+..+++|++|+++.+.       +. .++.
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~  259 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV  259 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHH
Confidence             45566666666665  1111 11112335666666666663222245555566666666644432       11 1233


Q ss_pred             hhhcCCCCCEE-EccCCccccccchhhhccCCCcEEEccCCCC
Q 041016          274 SIRNMTKLVTL-RLDSNVLSGEISTWLFDLQGMKSLYLGGNKL  315 (757)
Q Consensus       274 ~l~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  315 (757)
                      .+.++++|+.+ .+.+.. .+.++..+..+++|++|++++|.+
T Consensus       260 ~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l  301 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATV  301 (594)
T ss_dssp             HHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCC
T ss_pred             HHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCC
Confidence            45555555555 222211 122333334455555555555553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.2e-26  Score=241.42  Aligned_cols=238  Identities=20%  Similarity=0.160  Sum_probs=129.3

Q ss_pred             CCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEE
Q 041016          158 LRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLD  237 (757)
Q Consensus       158 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  237 (757)
                      +++|++|++++|.+++..+..|.++++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|+
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~  105 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence            3344444444444444444444444444444444444443322  445555555555555554221     225555555


Q ss_pred             ccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhh-ccCCCcEEEccCCCCc
Q 041016          238 LQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLF-DLQGMKSLYLGGNKLK  316 (757)
Q Consensus       238 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~  316 (757)
                      +++|.+++..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus       106 l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            555555543322   244566666666666655555566666666666666666655444442 4566666666666654


Q ss_pred             CCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccC
Q 041016          317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFE  396 (757)
Q Consensus       317 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  396 (757)
                      ..                         +. ...+++|++|++++|++++.                        |..+..
T Consensus       183 ~~-------------------------~~-~~~l~~L~~L~Ls~N~l~~l------------------------~~~~~~  212 (317)
T 3o53_A          183 DV-------------------------KG-QVVFAKLKTLDLSSNKLAFM------------------------GPEFQS  212 (317)
T ss_dssp             EE-------------------------EC-CCCCTTCCEEECCSSCCCEE------------------------CGGGGG
T ss_pred             cc-------------------------cc-ccccccCCEEECCCCcCCcc------------------------hhhhcc
Confidence            11                         11 12245566666666665532                        222344


Q ss_pred             CCCCCEEeCcCccccccCCcccCCCCCccEEEccCCccc-ccChHhhhccCCCCEEEccCC
Q 041016          397 SRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFS-GHVPKSISNIYRLLVLDLSNN  456 (757)
Q Consensus       397 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~ls~n  456 (757)
                      +++|++|++++|.+++ +|..+..+++|+.|++++|.+. +.++..+..+++|+.++++++
T Consensus       213 l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          213 AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            5566666666666663 4555666777777777777776 566677777777777777743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=4.1e-24  Score=239.76  Aligned_cols=263  Identities=27%  Similarity=0.325  Sum_probs=159.1

Q ss_pred             CCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEcc
Q 041016          351 TELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLS  430 (757)
Q Consensus       351 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~  430 (757)
                      .+++.|++++|.++ .+|..+. ..|++|++++|.++ .+|.   .+++|++|++++|++++ +|.   .+++|++|+++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            35788888888887 4454333 23667777777666 3443   34666667776666653 333   45666666666


Q ss_pred             CCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchh
Q 041016          431 SNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQN  510 (757)
Q Consensus       431 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~  510 (757)
                      +|.+++..+    .+++|+.|++++|.+++ +|.  .+++|++|++++|+++                      +. |. 
T Consensus       110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~----------------------~l-~~-  158 (622)
T 3g06_A          110 SNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLA----------------------SL-PA-  158 (622)
T ss_dssp             SCCCCCCCC----CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS----------------------CC-CC-
T ss_pred             CCcCCCCCC----CCCCcCEEECCCCCCCc-CCC--CCCCCCEEECcCCcCC----------------------Cc-CC-
Confidence            666664322    34566666666666553 221  1244555555555444                      32 21 


Q ss_pred             ccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccc
Q 041016          511 LSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMI  590 (757)
Q Consensus       511 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~  590 (757)
                        .+++|+.|++++|.+++ +|   ..+++|++|++++|.+++ +|..   +++|+.|++++|.++. +|..        
T Consensus       159 --~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~--------  219 (622)
T 3g06_A          159 --LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL--------  219 (622)
T ss_dssp             --CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC--------
T ss_pred             --ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC--------
Confidence              23566677777777664 33   345667777777777664 3322   3567777777776652 2221        


Q ss_pred             cCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCC
Q 041016          591 DTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP  670 (757)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  670 (757)
                                                           +++|+.|++++|++++ +|   ..+++|++|+|++|++++ +|
T Consensus       220 -------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp  257 (622)
T 3g06_A          220 -------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LP  257 (622)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC
T ss_pred             -------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CC
Confidence                                                 2334677777777774 44   345677777777777774 44


Q ss_pred             cchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016          671 STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE  719 (757)
Q Consensus       671 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  719 (757)
                      .   .+++|+.|+|++|.++ .+|..+..+++|+.|++++|+++|.+|.
T Consensus       258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            3   4567777777777777 5566777777777777777777776664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-26  Score=253.83  Aligned_cols=234  Identities=22%  Similarity=0.197  Sum_probs=106.2

Q ss_pred             CccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCc
Q 041016          423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENK  502 (757)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~  502 (757)
                      +|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+.   ..++.|++++|.
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~  110 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNN  110 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCc
Confidence            44444444444444444444444444444444444443333 44444444444444444322111   123333333333


Q ss_pred             cccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccC-CCCCCCEEECcCCcccccCCc
Q 041016          503 FSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLS-NLTSLQILDLSNNNLLGKIPS  581 (757)
Q Consensus       503 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~ls~n~l~~~~p~  581 (757)
                      +++..+.   .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+.
T Consensus       111 l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~  187 (487)
T 3oja_A          111 ISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ  187 (487)
T ss_dssp             CCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC
T ss_pred             CCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc
Confidence            3333322   234455555555555555555555555555555555555554444443 455555555555555433111


Q ss_pred             ccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCC
Q 041016          582 SFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS  661 (757)
Q Consensus       582 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  661 (757)
                      .  .                                          ++.|+.|+|++|.+++.. ..+..+++|+.|+|+
T Consensus       188 ~--~------------------------------------------l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls  222 (487)
T 3oja_A          188 V--V------------------------------------------FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLR  222 (487)
T ss_dssp             C--C------------------------------------------CTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECT
T ss_pred             c--c------------------------------------------CCCCCEEECCCCCCCCCC-HhHcCCCCccEEEec
Confidence            0  0                                          223344555555555322 234455555555555


Q ss_pred             CCCCCccCCcchhCCCCCCEEeCCCCcCc-cCCCCCccCCCCCCEEeCC
Q 041016          662 YNQLQGNIPSTFGNLEILETLDLSHNSLS-GKIPQTFAKLQQLTSLYLS  709 (757)
Q Consensus       662 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls  709 (757)
                      +|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       223 ~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          223 NNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            555553 3344455555555555555554 3344444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=8.7e-26  Score=248.62  Aligned_cols=235  Identities=25%  Similarity=0.218  Sum_probs=183.4

Q ss_pred             CCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECc
Q 041016          398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDIS  477 (757)
Q Consensus       398 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~  477 (757)
                      ++|++|++++|.+++..|..|..+++|++|++++|.+++..|  +..+++|++|++++|.+++..+    .++|++|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence            466666666666666666666666677777777776665554  6666677777777776664322    2667777777


Q ss_pred             CCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhcc-CCCCCCEEEccCCcCccccC
Q 041016          478 SNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLS-QLSSLQVLNLRNTALEGSIT  556 (757)
Q Consensus       478 ~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~  556 (757)
                      +|.+++..+..+ ..++.|++++|.+++..|..+.++++|++|++++|.+++..|..+. .+++|++|+|++|.+++..+
T Consensus       108 ~N~l~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~  186 (487)
T 3oja_A          108 NNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (487)
T ss_dssp             SSCCCCEEECCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CCcCCCCCcccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence            777766555433 4478888888888888888899999999999999999998888876 79999999999999997633


Q ss_pred             cccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEEC
Q 041016          557 DGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDL  636 (757)
Q Consensus       557 ~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~L  636 (757)
                        +..+++|++|++++|.+++..| .+..++.                                          |+.|+|
T Consensus       187 --~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~------------------------------------------L~~L~L  221 (487)
T 3oja_A          187 --QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG------------------------------------------VTWISL  221 (487)
T ss_dssp             --CCCCTTCCEEECCSSCCCEECG-GGGGGTT------------------------------------------CSEEEC
T ss_pred             --cccCCCCCEEECCCCCCCCCCH-hHcCCCC------------------------------------------ccEEEe
Confidence              4469999999999999987544 3655544                                          489999


Q ss_pred             cCCCCCCcCCccccCCCCCCEEeCCCCCCC-ccCCcchhCCCCCCEEeCC
Q 041016          637 SNNQLSGEIPSSLGSLKGLKSLNLSYNQLQ-GNIPSTFGNLEILETLDLS  685 (757)
Q Consensus       637 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls  685 (757)
                      ++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       222 s~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            9999995 7888999999999999999998 7778889999999888886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=9e-24  Score=214.35  Aligned_cols=205  Identities=27%  Similarity=0.348  Sum_probs=176.5

Q ss_pred             ccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCc
Q 041016          471 VGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTA  550 (757)
Q Consensus       471 L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~  550 (757)
                      .+.+++++++++. +|..+...++.|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCEEEccCCCCCc-cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            4456666666653 455555567788888888887777789999999999999999997777778999999999999999


Q ss_pred             CccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccc
Q 041016          551 LEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAI  630 (757)
Q Consensus       551 l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  630 (757)
                      +.+..+..|..+++|++|++++|.+++..+..|.++++|                                         
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------------------------------------  135 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL-----------------------------------------  135 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC-----------------------------------------
T ss_pred             CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC-----------------------------------------
Confidence            998778889999999999999999988777766665544                                         


Q ss_pred             cCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCC
Q 041016          631 YSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN  710 (757)
Q Consensus       631 l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  710 (757)
                       +.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus       136 -~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          136 -TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             -CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence             8999999999987777799999999999999999988888899999999999999999988888899999999999999


Q ss_pred             CcceecCC
Q 041016          711 NKLSGRIP  718 (757)
Q Consensus       711 N~l~g~iP  718 (757)
                      |++...-+
T Consensus       215 N~~~c~c~  222 (270)
T 2o6q_A          215 NPWDCTCN  222 (270)
T ss_dssp             SCBCCSSS
T ss_pred             CCeeCCCc
Confidence            99976544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=1.7e-23  Score=213.35  Aligned_cols=225  Identities=22%  Similarity=0.247  Sum_probs=147.1

Q ss_pred             EEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCc
Q 041016          114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN  193 (757)
Q Consensus       114 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  193 (757)
                      ..+.++..++ .+| ..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus        11 ~~~c~~~~l~-~ip-~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCC-SSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccC-CCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            4555555555 566 3332  56888888888888666667778888888888888877766667777777777777777


Q ss_pred             cCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCccc-CcccccCCCCCCEEEccCCCCCCccc
Q 041016          194 LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGE-IPEDIGTLANITILALSNNALTGAIP  272 (757)
Q Consensus       194 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~  272 (757)
                      .+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++. +|..+..+++|++|++++|++++..+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            77766667777777777777777777765555677777777777777776653 46666666666666666666665555


Q ss_pred             hhhhcCCCCC----EEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016          273 QSIRNMTKLV----TLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS  348 (757)
Q Consensus       273 ~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  348 (757)
                      ..+..+++|+    +|++++|.+++..+..+ ...+|+                        +|++++|++++..+..+.
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~------------------------~L~L~~n~l~~~~~~~~~  221 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLK------------------------ELALDTNQLKSVPDGIFD  221 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEE------------------------EEECCSSCCSCCCTTTTT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCcccc-CCCccc------------------------EEECCCCceeecCHhHhc
Confidence            5555544444    55555555543322222 222344                        444444444455555567


Q ss_pred             CCCCCCEEEccCCcccCcc
Q 041016          349 TQTELTFLDLSENELEGTY  367 (757)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~  367 (757)
                      .+++|+.|++++|.+.+..
T Consensus       222 ~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          222 RLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             TCCSCCEEECCSSCBCCCT
T ss_pred             ccccccEEEccCCcccccC
Confidence            7788888888888777554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=9.3e-24  Score=214.41  Aligned_cols=205  Identities=24%  Similarity=0.244  Sum_probs=165.4

Q ss_pred             hhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEe
Q 041016          442 ISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLD  521 (757)
Q Consensus       442 l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~  521 (757)
                      ...+++|+.|++++|.+. .++.+..+++|++|++++|.+++                      .  ..+..+++|++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~----------------------~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHD----------------------I--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCC----------------------C--GGGTTCTTCCEEE
T ss_pred             cccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCC----------------------c--hhhcCCCCCCEEE
Confidence            445666666666666654 34455556666666666555442                      1  2567888999999


Q ss_pred             CcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCc
Q 041016          522 LHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE  601 (757)
Q Consensus       522 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~  601 (757)
                      +++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|            
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L------------  159 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL------------  159 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC------------
Confidence            99999988888788889999999999999988777788899999999999999887666666555444            


Q ss_pred             ccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCE
Q 041016          602 IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILET  681 (757)
Q Consensus       602 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  681 (757)
                                                    +.|++++|++++..+..|+.+++|++|++++|++++.+|..|..+++|+.
T Consensus       160 ------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (272)
T 3rfs_A          160 ------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY  209 (272)
T ss_dssp             ------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence                                          88999999999888888899999999999999999998888999999999


Q ss_pred             EeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCC
Q 041016          682 LDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES  720 (757)
Q Consensus       682 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~  720 (757)
                      |++++|.+.+.       ++.|++|+++.|+++|.||..
T Consensus       210 L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          210 IWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             EECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred             EEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence            99999998865       457899999999999999975

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3e-23  Score=211.44  Aligned_cols=205  Identities=25%  Similarity=0.319  Sum_probs=183.5

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      ++|++|++++|.+++ ++...|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            579999999999985 4436899999999999999999977777899999999999999999998889999999999999


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccccccc-cCccccCCCCCCEEEccCCcCcccCcccccCCCCCC----EEEccC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG-IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANIT----ILALSN  264 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~  264 (757)
                      +++|.+.+..+..++++++|++|++++|.+.+. +|..+.++++|++|++++|.+++..+..+..+++|+    +|++++
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence            999999987777899999999999999999864 689999999999999999999988777887777776    899999


Q ss_pred             CCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      |.+++..+..+. ..+|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus       187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            999965555444 458999999999999777777889999999999999887

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=5.5e-23  Score=206.12  Aligned_cols=158  Identities=25%  Similarity=0.264  Sum_probs=81.5

Q ss_pred             CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEcc
Q 041016          136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLR  215 (757)
Q Consensus       136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  215 (757)
                      ++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            44555555555554444445555555555555555554444445555555555555555554444445555555555555


Q ss_pred             ccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccc
Q 041016          216 QNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG  293 (757)
Q Consensus       216 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  293 (757)
                      +|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            555554444444555555555555555554444445555555555555555554444455555555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=8.8e-23  Score=208.77  Aligned_cols=203  Identities=26%  Similarity=0.259  Sum_probs=171.1

Q ss_pred             CCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEE
Q 041016          466 GSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLN  545 (757)
Q Consensus       466 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~  545 (757)
                      ..++++++++++++.++. +|..+...++.|++++|.+++..+..|.++++|++|++++|.+++..+.  ..+++|++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~~-ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~   83 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD   83 (290)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred             cccCCccEEECCCCCCCc-CCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence            344556666666666653 4444455678888888888888888999999999999999999865432  7899999999


Q ss_pred             ccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccc
Q 041016          546 LRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS  625 (757)
Q Consensus       546 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  625 (757)
                      +++|++. .+|..+..+++|++|++++|++++..|..|.++++|                                    
T Consensus        84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L------------------------------------  126 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL------------------------------------  126 (290)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC------------------------------------
T ss_pred             CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC------------------------------------
Confidence            9999998 678888999999999999999997777777766555                                    


Q ss_pred             ccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCE
Q 041016          626 KSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTS  705 (757)
Q Consensus       626 ~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  705 (757)
                            +.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|+.
T Consensus       127 ------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~  199 (290)
T 1p9a_G          127 ------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF  199 (290)
T ss_dssp             ------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred             ------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCe
Confidence                  89999999999888888899999999999999999887788899999999999999999 56777888899999


Q ss_pred             EeCCCCccee
Q 041016          706 LYLSNNKLSG  715 (757)
Q Consensus       706 L~ls~N~l~g  715 (757)
                      +++++|++..
T Consensus       200 l~L~~Np~~C  209 (290)
T 1p9a_G          200 AFLHGNPWLC  209 (290)
T ss_dssp             EECCSCCBCC
T ss_pred             EEeCCCCccC
Confidence            9999999865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=1.9e-23  Score=212.06  Aligned_cols=208  Identities=24%  Similarity=0.236  Sum_probs=109.1

Q ss_pred             CCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016          132 ANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK  211 (757)
Q Consensus       132 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  211 (757)
                      ..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+++..+..|+++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            34455555555555544 222 344555555555555555432  24455555555555555555444444555555555


Q ss_pred             EEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcc
Q 041016          212 LSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL  291 (757)
Q Consensus       212 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  291 (757)
                      |++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            55555555544444455555555555555555544444455555566666666655555445555566666666666666


Q ss_pred             ccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCC
Q 041016          292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ  350 (757)
Q Consensus       292 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  350 (757)
                      ++..+..+..+++|++|++++|.+.       ..++.++.+++..|.+.|.+|.+++.+
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence            6555555556666666666666544       011223344444444445555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.6e-22  Score=206.90  Aligned_cols=204  Identities=23%  Similarity=0.244  Sum_probs=178.0

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCC
Q 041016          105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN  184 (757)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  184 (757)
                      .+.+++++++++++++.++ .+| ..+.  +++++|+|++|.+++..|..|.++++|++|++++|.+++..+.  ..+++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip-~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~   78 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV   78 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred             cccccCCccEEECCCCCCC-cCC-CCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence            3667889999999999997 677 3333  7899999999999988888999999999999999999865443  78999


Q ss_pred             CCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccC
Q 041016          185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN  264 (757)
Q Consensus       185 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  264 (757)
                      |++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+.|++++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            999999999998 6788889999999999999999977778899999999999999999987777788999999999999


Q ss_pred             CCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      |++++..+..|..+++|++|++++|.++ .+|..+....+|+.+++++|.+.
T Consensus       158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            9999766677888999999999999998 67777888889999999999876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.90  E-value=1.6e-24  Score=227.91  Aligned_cols=236  Identities=18%  Similarity=0.209  Sum_probs=172.9

Q ss_pred             CCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCC--CCCCEEeCCCCCCCCCCCccccCCCCCCCEEe
Q 041016           64 SDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRI--RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLD  141 (757)
Q Consensus        64 ~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~  141 (757)
                      .-|.+|.++.|++    ..++.+++++.     .+.   +..+..+  +.+++|++++|.+.+..+ . +.++++|++|+
T Consensus        34 ~vc~~W~~~~~~~----~~~~~l~l~~~-----~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-~-~~~~~~L~~L~   99 (336)
T 2ast_B           34 GVCKRWYRLASDE----SLWQTLDLTGK-----NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-E-HFSPFRVQHMD   99 (336)
T ss_dssp             SSCHHHHHHHTCS----TTSSEEECTTC-----BCC---HHHHHHHHHTTCSEEECTTCEECSCCC-S-CCCCBCCCEEE
T ss_pred             HHHHHHHHHhcCc----hhheeeccccc-----cCC---HHHHHhhhhccceEEEcCCccccccch-h-hccCCCCCEEE
Confidence            3566899998864    34667888765     222   2344555  788888888888876655 3 55788888888


Q ss_pred             CCCCcCCCC-cCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCc-cCCcc-CchhccCCCCCCEEEcccc-
Q 041016          142 LKDNNLNGS-IPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDN-LIQGQ-IPAEIGNLTNLHKLSLRQN-  217 (757)
Q Consensus       142 Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n-  217 (757)
                      +++|.+++. +|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|++++| 
T Consensus       100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence            888888765 7777888888888888888888777777888888888888888 56652 5666777888888888888 


Q ss_pred             ccccc-cCccccCCC-CCCEEEccCC--cCc-ccCcccccCCCCCCEEEccCCC-CCCccchhhhcCCCCCEEEccCCc-
Q 041016          218 KFSGG-IPLSLLQLR-KLETLDLQRN--SLS-GEIPEDIGTLANITILALSNNA-LTGAIPQSIRNMTKLVTLRLDSNV-  290 (757)
Q Consensus       218 ~l~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-  290 (757)
                      .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+.++++|++|++++|. 
T Consensus       180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence            77654 466677788 8888888888  444 3456666778888888888887 666667777788888888888874 


Q ss_pred             cccccchhhhccCCCcEEEccCC
Q 041016          291 LSGEISTWLFDLQGMKSLYLGGN  313 (757)
Q Consensus       291 l~~~~~~~l~~l~~L~~L~L~~n  313 (757)
                      +.......+..+++|++|++++|
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc
Confidence            33222235667777888877777

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=8.5e-24  Score=224.30  Aligned_cols=268  Identities=21%  Similarity=0.196  Sum_probs=124.9

Q ss_pred             EeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcC----ccccCCC-CCCEEEccCCcCCCcccccccCC-----CC
Q 041016          115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIP----SQLFNLR-YLEFLDLSANAIEGKLSSRVAGL-----KN  184 (757)
Q Consensus       115 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~  184 (757)
                      ++++.|.++|.+| ..+...++|++|+|++|.+++..+    ..+.+++ +|++|+|++|.+.+..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHH-HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4555566655554 444444446666666665554443    4444555 55555555555554444433332     44


Q ss_pred             CCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCC-CCCCEEEccCCcCcccCcccc----cC-CCCCC
Q 041016          185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQL-RKLETLDLQRNSLSGEIPEDI----GT-LANIT  258 (757)
Q Consensus       185 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~  258 (757)
                      |++|++++|.+++..+..+...                    +..+ ++|++|++++|.+++..+..+    .. .++|+
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~  141 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT  141 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred             ccEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence            4444444444443333322111                    1122 444444444444443333222    12 13455


Q ss_pred             EEEccCCCCCCcc----chhhhcCC-CCCEEEccCCccccccchhhh----cc-CCCcEEEccCCCCcCCCcccccCCcc
Q 041016          259 ILALSNNALTGAI----PQSIRNMT-KLVTLRLDSNVLSGEISTWLF----DL-QGMKSLYLGGNKLKWNDNVSIVPKCM  328 (757)
Q Consensus       259 ~L~L~~n~l~~~~----~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~~~~~~~~~~~  328 (757)
                      +|++++|.+++..    +..+...+ +|++|++++|.+++..+..+.    .+ ++|++|++++|.++....        
T Consensus       142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~--------  213 (362)
T 3goz_A          142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY--------  213 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--------
T ss_pred             EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH--------
Confidence            5555555444322    22233333 555555555555544443332    22 355555555555542111        


Q ss_pred             cceeecCCccCccCcchhccC-CCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcC
Q 041016          329 LTELSLRSCSVRGSIPLWLST-QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSR  407 (757)
Q Consensus       329 L~~L~L~~~~~~~~~~~~l~~-~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~  407 (757)
                                  ..++..+.. .++|++|++++|.+++..+..+.                   ..+..+++|++|++++
T Consensus       214 ------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-------------------~~~~~l~~L~~L~L~~  262 (362)
T 3goz_A          214 ------------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK-------------------LLKDSLKHLQTVYLDY  262 (362)
T ss_dssp             ------------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH-------------------HTTTTTTTCSEEEEEH
T ss_pred             ------------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH-------------------HHHhcCCCccEEEecc
Confidence                        012333333 23566666666655543332111                   1223345566666666


Q ss_pred             cccccc-------CCcccCCCCCccEEEccCCcccccChHhh
Q 041016          408 NNFSGE-------LPETIGQSTSVMVLMLSSNNFSGHVPKSI  442 (757)
Q Consensus       408 n~l~~~-------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  442 (757)
                      |.+.+.       ++..+..+++|++|++++|.+.+..+..+
T Consensus       263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence            653322       22345667777788888887766544443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1e-23  Score=226.15  Aligned_cols=243  Identities=22%  Similarity=0.311  Sum_probs=135.2

Q ss_pred             ccccccCCCCCCEEeCCCCCCCCCCCc---cccCCCCCCCEEeCCCC---cCCCCcCccc-------cCCCCCCEEEccC
Q 041016          102 VLAPIFRIRSLMTLDLSYNSMQGEVPG---TGFANLTRLTYLDLKDN---NLNGSIPSQL-------FNLRYLEFLDLSA  168 (757)
Q Consensus       102 ~~~~l~~l~~L~~L~Ls~n~l~~~i~~---~~~~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~  168 (757)
                      +...+..+++|++|+|++|.+++..+.   ..+..+++|++|+|++|   .+++.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            334455666777777777766543210   23556777777777764   3334444444       4666666666666


Q ss_pred             CcCCC----cccccccCCCCCCEEEccCccCCccCchhcc----CC---------CCCCEEEccccccc-cccC---ccc
Q 041016          169 NAIEG----KLSSRVAGLKNLKQLILDDNLIQGQIPAEIG----NL---------TNLHKLSLRQNKFS-GGIP---LSL  227 (757)
Q Consensus       169 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~l  227 (757)
                      |.+..    .++..+..+++|++|+|++|.+++..+..+.    .+         ++|++|++++|.++ +.++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            66665    3455556666666666666666533332222    22         56666666666654 2223   244


Q ss_pred             cCCCCCCEEEccCCcCcc-----cCcccccCCCCCCEEEccCCCCC----CccchhhhcCCCCCEEEccCCccccc----
Q 041016          228 LQLRKLETLDLQRNSLSG-----EIPEDIGTLANITILALSNNALT----GAIPQSIRNMTKLVTLRLDSNVLSGE----  294 (757)
Q Consensus       228 ~~l~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----  294 (757)
                      ..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    ..+|..+..+++|++|++++|.+++.    
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            455566666666665541     22224555555666666555553    34455555555555555555555543    


Q ss_pred             cchhhhc--cCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCcc----Ccchhc-cCCCCCCEEEccCCcccCcc
Q 041016          295 ISTWLFD--LQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG----SIPLWL-STQTELTFLDLSENELEGTY  367 (757)
Q Consensus       295 ~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~l-~~~~~L~~L~l~~n~l~~~~  367 (757)
                      ++..+..  +++|++|++++|.++                        +    .+|..+ .++++|++|++++|++++..
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~------------------------~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIE------------------------LDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCB------------------------HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHhhccCCCeEEEECcCCcCC------------------------HHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            2333322  455555555555444                        4    356656 55788888888888887665


Q ss_pred             c
Q 041016          368 P  368 (757)
Q Consensus       368 ~  368 (757)
                      +
T Consensus       320 ~  320 (386)
T 2ca6_A          320 D  320 (386)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.2e-21  Score=196.24  Aligned_cols=180  Identities=27%  Similarity=0.318  Sum_probs=137.1

Q ss_pred             cEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCC
Q 041016          494 LMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNN  573 (757)
Q Consensus       494 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n  573 (757)
                      +.++++++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus        17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            34555555554 2333332  46777888888777777777777788888888888887777777777888888888888


Q ss_pred             cccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCC
Q 041016          574 NLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLK  653 (757)
Q Consensus       574 ~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~  653 (757)
                      ++++..+..|..+++|                                          +.|+|++|++++..+..|..++
T Consensus        94 ~l~~~~~~~~~~l~~L------------------------------------------~~L~L~~N~l~~~~~~~~~~l~  131 (251)
T 3m19_A           94 QLASLPLGVFDHLTQL------------------------------------------DKLYLGGNQLKSLPSGVFDRLT  131 (251)
T ss_dssp             CCCCCCTTTTTTCTTC------------------------------------------CEEECCSSCCCCCCTTTTTTCT
T ss_pred             cccccChhHhcccCCC------------------------------------------CEEEcCCCcCCCcChhHhccCC
Confidence            8776655555544433                                          7788888888877677788888


Q ss_pred             CCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016          654 GLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP  718 (757)
Q Consensus       654 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  718 (757)
                      +|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus       132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            99999999999988777788889999999999999998888888889999999999999887643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.7e-23  Score=220.39  Aligned_cols=254  Identities=22%  Similarity=0.241  Sum_probs=182.7

Q ss_pred             cceeeccccccCCCCCCEEeCCCCCCCCCCCc----cccCCCC-CCCEEeCCCCcCCCCcCccccCC-----CCCCEEEc
Q 041016           97 IVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPG----TGFANLT-RLTYLDLKDNNLNGSIPSQLFNL-----RYLEFLDL  166 (757)
Q Consensus        97 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L  166 (757)
                      .+.|.++..+...++|++|||++|.+++ ++.    ..+.+++ +|++|+|++|.+++..+..+..+     ++|++|+|
T Consensus         9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A            9 PGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNL   87 (362)
T ss_dssp             TTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             cchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEEC
Confidence            6777777777777789999999999974 443    5677888 99999999999998878777765     99999999


Q ss_pred             cCCcCCCcccccc----cCC-CCCCEEEccCccCCccCchhc----cC-CCCCCEEEccccccccccC----ccccCCC-
Q 041016          167 SANAIEGKLSSRV----AGL-KNLKQLILDDNLIQGQIPAEI----GN-LTNLHKLSLRQNKFSGGIP----LSLLQLR-  231 (757)
Q Consensus       167 s~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~p~~~----~~-l~~L~~L~L~~n~l~~~~~----~~l~~l~-  231 (757)
                      ++|.+++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+..+    ..+..++ 
T Consensus        88 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~  167 (362)
T 3goz_A           88 SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPA  167 (362)
T ss_dssp             CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCT
T ss_pred             cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCc
Confidence            9999987776644    444 899999999999987766554    33 3689999999999885433    3445555 


Q ss_pred             CCCEEEccCCcCcccCcccc----cCC-CCCCEEEccCCCCCCc----cchhhhc-CCCCCEEEccCCccccccchh---
Q 041016          232 KLETLDLQRNSLSGEIPEDI----GTL-ANITILALSNNALTGA----IPQSIRN-MTKLVTLRLDSNVLSGEISTW---  298 (757)
Q Consensus       232 ~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~~~---  298 (757)
                      +|++|++++|.+++..+..+    ..+ ++|++|++++|.+++.    ++..+.. .++|++|++++|.+++..+..   
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  247 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL  247 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence            88999999988877666444    344 5888888888887753    3445555 347888888888777544422   


Q ss_pred             -hhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCccc
Q 041016          299 -LFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYP  368 (757)
Q Consensus       299 -l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  368 (757)
                       +..+++|++|++++|.+..+....+                 ..++..+..+++|+.||+++|++.+..+
T Consensus       248 ~~~~l~~L~~L~L~~n~l~~i~~~~~-----------------~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          248 LKDSLKHLQTVYLDYDIVKNMSKEQC-----------------KALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TTTTTTTCSEEEEEHHHHTTCCHHHH-----------------HHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHhcCCCccEEEeccCCccccCHHHH-----------------HHHHHHhccCCceEEEecCCCcCCCcch
Confidence             3455667777777776442221110                 1233445667777788888887765533

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=6e-23  Score=215.89  Aligned_cols=248  Identities=19%  Similarity=0.223  Sum_probs=188.9

Q ss_pred             ccEEEccCCcccccChHhhhcc--CCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccC-CCchhhh--cccEEEc
Q 041016          424 VMVLMLSSNNFSGHVPKSISNI--YRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE-VPSSFGV--TILMLSL  498 (757)
Q Consensus       424 L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~--~l~~L~l  498 (757)
                      ++.++++++.+.   +..+..+  ++++.+++++|.+.+..+.+..+++|++|++++|.+.+. ++..+..  .+++|++
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            566666666654   4455555  677777777777777766666777788888887777654 4444433  3788888


Q ss_pred             cCCccccccchhccCCCCCCEEeCcCC-cccCc-chhhccCCCCCCEEEccCC-cCccc-cCcccCCCC-CCCEEECcCC
Q 041016          499 SENKFSGQLPQNLSNLSLLQHLDLHDN-NLTGE-FPAFLSQLSSLQVLNLRNT-ALEGS-ITDGLSNLT-SLQILDLSNN  573 (757)
Q Consensus       499 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~L~~L~ls~n  573 (757)
                      ++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            888888788888999999999999999 67753 6777888999999999999 88864 567788899 9999999999


Q ss_pred             --ccc-ccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCC-CCCcCCccc
Q 041016          574 --NLL-GKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQ-LSGEIPSSL  649 (757)
Q Consensus       574 --~l~-~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~-l~~~~p~~l  649 (757)
                        .++ +.+|..+.++                                          +.|+.|++++|. +++..+..+
T Consensus       206 ~~~~~~~~l~~~~~~~------------------------------------------~~L~~L~l~~~~~l~~~~~~~l  243 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRC------------------------------------------PNLVHLDLSDSVMLKNDCFQEF  243 (336)
T ss_dssp             GGGSCHHHHHHHHHHC------------------------------------------TTCSEEECTTCTTCCGGGGGGG
T ss_pred             cccCCHHHHHHHHhhC------------------------------------------CCCCEEeCCCCCcCCHHHHHHH
Confidence              444 3344444433                                          455999999999 787888899


Q ss_pred             cCCCCCCEEeCCCCC-CCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCC-CCCEEeCCCCcceecCCCC
Q 041016          650 GSLKGLKSLNLSYNQ-LQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ-QLTSLYLSNNKLSGRIPES  720 (757)
Q Consensus       650 ~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~iP~~  720 (757)
                      ..+++|++|++++|. ++......+.++++|++|++++| ++   .+.+..+. .|..|++++|++++..|..
T Consensus       244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence            999999999999995 33332236889999999999999 32   33455553 4888889999999998854

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.7e-22  Score=200.95  Aligned_cols=199  Identities=19%  Similarity=0.251  Sum_probs=156.4

Q ss_pred             CCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCc-ccCcchhhccCCCCCCEEEccC-CcCccccCcccCC
Q 041016          484 EVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN-LTGEFPAFLSQLSSLQVLNLRN-TALEGSITDGLSN  561 (757)
Q Consensus       484 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~  561 (757)
                      .+|. +...++.|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..
T Consensus        25 ~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~  103 (239)
T 2xwt_C           25 RIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE  103 (239)
T ss_dssp             SCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred             ccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence            4455 55568888888888887777788899999999999997 8766667888899999999998 8888777788888


Q ss_pred             CCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCC-C
Q 041016          562 LTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNN-Q  640 (757)
Q Consensus       562 l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n-~  640 (757)
                      +++|++|++++|++++ +|. |..+.++                                       ..++.|++++| +
T Consensus       104 l~~L~~L~l~~n~l~~-lp~-~~~l~~L---------------------------------------~~L~~L~l~~N~~  142 (239)
T 2xwt_C          104 LPLLKFLGIFNTGLKM-FPD-LTKVYST---------------------------------------DIFFILEITDNPY  142 (239)
T ss_dssp             CTTCCEEEEEEECCCS-CCC-CTTCCBC---------------------------------------CSEEEEEEESCTT
T ss_pred             CCCCCEEeCCCCCCcc-ccc-ccccccc---------------------------------------ccccEEECCCCcc
Confidence            9999999999998875 554 5544443                                       11348899999 8


Q ss_pred             CCCcCCccccCCCCCC-EEeCCCCCCCccCCcchhCCCCCCEEeCCCCc-CccCCCCCccCC-CCCCEEeCCCCcceecC
Q 041016          641 LSGEIPSSLGSLKGLK-SLNLSYNQLQGNIPSTFGNLEILETLDLSHNS-LSGKIPQTFAKL-QQLTSLYLSNNKLSGRI  717 (757)
Q Consensus       641 l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~ls~N~l~g~i  717 (757)
                      +++..+..|.++++|+ +|++++|+++...+..|.. ++|++|++++|+ +++..+..|..+ ++|++|++++|++++ +
T Consensus       143 l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l  220 (239)
T 2xwt_C          143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L  220 (239)
T ss_dssp             CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred             hhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence            8877777788899999 9999999998555555665 889999999995 887777888888 899999999999874 5


Q ss_pred             CCCCCCCCCC
Q 041016          718 PESPQMDRQI  727 (757)
Q Consensus       718 P~~~~~~~~~  727 (757)
                      |.. .+..+.
T Consensus       221 ~~~-~~~~L~  229 (239)
T 2xwt_C          221 PSK-GLEHLK  229 (239)
T ss_dssp             CCT-TCTTCS
T ss_pred             Chh-HhccCc
Confidence            544 344443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.6e-23  Score=224.62  Aligned_cols=245  Identities=22%  Similarity=0.278  Sum_probs=141.9

Q ss_pred             CCcccCCCCCccEEEccCCcccccChHh----hhccCCCCEEEccCCc---ccccCC-C-------CCCCCcccEEECcC
Q 041016          414 LPETIGQSTSVMVLMLSSNNFSGHVPKS----ISNIYRLLVLDLSNNS---FSGEFP-A-------FGSDSLVGHVDISS  478 (757)
Q Consensus       414 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~ls~n~---l~~~~~-~-------~~~~~~L~~L~l~~  478 (757)
                      ++..+..+++|++|++++|.+++..+..    +..+++|++|++++|.   +.+.+| .       +..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            4445556677777777777776554433    4466777777777653   333333 2       24555555555555


Q ss_pred             CccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhcc----CC---------CCCCEEE
Q 041016          479 NRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLS----QL---------SSLQVLN  545 (757)
Q Consensus       479 n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~----~l---------~~L~~L~  545 (757)
                      |.+.+....                  .++..+..+++|++|++++|.+++..+..+.    .+         ++|++|+
T Consensus       104 n~l~~~~~~------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A          104 NAFGPTAQE------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             CCCCTTTHH------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             CcCCHHHHH------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence            555432111                  2445566666666666666666543333222    22         6666666


Q ss_pred             ccCCcCc-cccC---cccCCCCCCCEEECcCCcccc-----cCCcccccccccccCCCCCCCCCcccCCccccceeEeee
Q 041016          546 LRNTALE-GSIT---DGLSNLTSLQILDLSNNNLLG-----KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNW  616 (757)
Q Consensus       546 Ls~n~l~-~~~~---~~l~~l~~L~~L~ls~n~l~~-----~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  616 (757)
                      +++|+++ +.++   ..+..+++|++|++++|.++.     ..|..+..                               
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~-------------------------------  214 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY-------------------------------  214 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG-------------------------------
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc-------------------------------
Confidence            6666665 2233   345566666777777666652     12212222                               


Q ss_pred             ccCccccccccccccCeEECcCCCCC----CcCCccccCCCCCCEEeCCCCCCCcc----CCcchhC--CCCCCEEeCCC
Q 041016          617 KNSKRGLSSKSLAIYSLMDLSNNQLS----GEIPSSLGSLKGLKSLNLSYNQLQGN----IPSTFGN--LEILETLDLSH  686 (757)
Q Consensus       617 ~~~~~~~~~~~~~~l~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~Ls~  686 (757)
                                 ++.|+.|+|++|.++    +.+|..+..+++|++|+|++|++++.    ++..+..  +++|++|+|++
T Consensus       215 -----------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~  283 (386)
T 2ca6_A          215 -----------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY  283 (386)
T ss_dssp             -----------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred             -----------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcC
Confidence                       233466777777764    45566667777777777777777654    4455533  67777777777


Q ss_pred             CcCcc----CCCCCc-cCCCCCCEEeCCCCcceecCC
Q 041016          687 NSLSG----KIPQTF-AKLQQLTSLYLSNNKLSGRIP  718 (757)
Q Consensus       687 N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~g~iP  718 (757)
                      |.+++    .+|..+ .++++|++|++++|++++..|
T Consensus       284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             SCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            77776    355555 446777777777777765543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=4e-22  Score=206.64  Aligned_cols=227  Identities=20%  Similarity=0.208  Sum_probs=169.4

Q ss_pred             CccEEEccCCcccccChH---hhhccCCCCEEEccCCcccccCC-CC--CCCCcccEEECcCCccccCCCchhhhcccEE
Q 041016          423 SVMVLMLSSNNFSGHVPK---SISNIYRLLVLDLSNNSFSGEFP-AF--GSDSLVGHVDISSNRFSGEVPSSFGVTILML  496 (757)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~ls~n~l~~~~~-~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L  496 (757)
                      .++.+.+.++.+....-.   .+..+++|++|++++|.+.+..| .+  ..+++|++|++++|++++..+..        
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~--------  136 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL--------  136 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------
Confidence            456666666655422111   12345678888888888887777 44  77778887777777776543311        


Q ss_pred             EccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccc--c--CcccCCCCCCCEEECcC
Q 041016          497 SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS--I--TDGLSNLTSLQILDLSN  572 (757)
Q Consensus       497 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~l~~L~~L~ls~  572 (757)
                                ....+..+++|++|++++|++.+..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++++
T Consensus       137 ----------~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~  206 (310)
T 4glp_A          137 ----------AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN  206 (310)
T ss_dssp             ----------HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred             ----------HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence                      012345788999999999999888888899999999999999998652  2  23457889999999999


Q ss_pred             CcccccCCcc----cccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCcc
Q 041016          573 NNLLGKIPSS----FGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSS  648 (757)
Q Consensus       573 n~l~~~~p~~----~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~  648 (757)
                      |.++.. +..    +.+                                          ++.|+.|||++|++++..|..
T Consensus       207 N~l~~l-~~~~~~l~~~------------------------------------------l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          207 TGMETP-TGVCAALAAA------------------------------------------GVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             SCCCCH-HHHHHHHHHH------------------------------------------TCCCSSEECTTSCCCCCCCSC
T ss_pred             CCCCch-HHHHHHHHhc------------------------------------------CCCCCEEECCCCCCCccchhh
Confidence            988622 211    222                                          345589999999999888888


Q ss_pred             ccCC---CCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016          649 LGSL---KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG  715 (757)
Q Consensus       649 l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  715 (757)
                      +..+   ++|++|+|++|+++ .+|..+.  ++|++|+|++|++++. |. +..+++|++|++++|+++.
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            8777   69999999999999 6677664  7999999999999975 43 6788999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=8.8e-22  Score=195.86  Aligned_cols=196  Identities=16%  Similarity=0.173  Sum_probs=151.0

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCc-CCCCcCccccCCCCCCEEEccC-CcCCCcccccccCCCCCCEE
Q 041016          111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN-LNGSIPSQLFNLRYLEFLDLSA-NAIEGKLSSRVAGLKNLKQL  188 (757)
Q Consensus       111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L  188 (757)
                      +|++|++++|.++ .+|...|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            7889999999887 4554678889999999999986 7766566788888999999988 88887777788888888888


Q ss_pred             EccCccCCccCchhccCCCCCC---EEEcccc-ccccccCccccCCCCCC-EEEccCCcCcccCcccccCCCCCCEEEcc
Q 041016          189 ILDDNLIQGQIPAEIGNLTNLH---KLSLRQN-KFSGGIPLSLLQLRKLE-TLDLQRNSLSGEIPEDIGTLANITILALS  263 (757)
Q Consensus       189 ~L~~n~l~~~~p~~~~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  263 (757)
                      ++++|.+++ +|. +..+++|+   +|++++| .+++..+..|.++++|+ +|++++|.++. +|......++|++|+++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECT
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcC
Confidence            888888885 565 77788887   8888888 88766666788888888 88888888873 44333333788888888


Q ss_pred             CCC-CCCccchhhhcC-CCCCEEEccCCccccccchhhhccCCCcEEEccCC
Q 041016          264 NNA-LTGAIPQSIRNM-TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN  313 (757)
Q Consensus       264 ~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  313 (757)
                      +|+ +++..+..|..+ ++|++|++++|.+++. |..  .+++|+.|+++++
T Consensus       188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            884 776556677777 8888888888887743 332  5667777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=5.2e-21  Score=197.65  Aligned_cols=194  Identities=25%  Similarity=0.374  Sum_probs=153.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016          106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL  185 (757)
Q Consensus       106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  185 (757)
                      ...+++|++|++++|.+. .++  .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++.  ..+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L  109 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSI  109 (308)
T ss_dssp             HHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred             HHHcCCcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence            345678888888888886 454  478888899999999988854 43 88888899999998888764  368888888


Q ss_pred             CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016          186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN  265 (757)
Q Consensus       186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  265 (757)
                      ++|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|
T Consensus       110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN  183 (308)
T ss_dssp             CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence            8999988888753 3 38888888888888888875443  7788888888888888875433  788888888888888


Q ss_pred             CCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      .+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            8886543  7788888888888888876543  778888888888888876

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=7.2e-21  Score=196.57  Aligned_cols=208  Identities=23%  Similarity=0.337  Sum_probs=165.4

Q ss_pred             EeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCcc
Q 041016          115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL  194 (757)
Q Consensus       115 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  194 (757)
                      +.+..+.+.+.+.   +..+++|++|++++|.++ .+| .+..+++|++|++++|.+.+..+  +..+++|++|++++|.
T Consensus        24 ~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~   96 (308)
T 1h6u_A           24 IAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (308)
T ss_dssp             HHTTCSSTTSEEC---HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCceec---HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence            3455555554333   557889999999999998 455 68899999999999999987655  8999999999999999


Q ss_pred             CCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchh
Q 041016          195 IQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQS  274 (757)
Q Consensus       195 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  274 (757)
                      +++.  ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  
T Consensus        97 l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--  168 (308)
T 1h6u_A           97 LKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--  168 (308)
T ss_dssp             CSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             CCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--
Confidence            8853  3688899999999999998854 3 38889999999999999886533  7888899999999998886433  


Q ss_pred             hhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCC
Q 041016          275 IRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELT  354 (757)
Q Consensus       275 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~  354 (757)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|.++                        +..  .+..+++|+
T Consensus       169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~------------------------~~~--~l~~l~~L~  220 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS------------------------DVS--PLANTSNLF  220 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC------------------------BCG--GGTTCTTCC
T ss_pred             hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC------------------------ccc--cccCCCCCC
Confidence            7888888888888888875443  677888888888887776                        333  267888888


Q ss_pred             EEEccCCcccC
Q 041016          355 FLDLSENELEG  365 (757)
Q Consensus       355 ~L~l~~n~l~~  365 (757)
                      .|++++|++++
T Consensus       221 ~L~l~~N~i~~  231 (308)
T 1h6u_A          221 IVTLTNQTITN  231 (308)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEccCCeeec
Confidence            88888888875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=7.4e-22  Score=204.61  Aligned_cols=228  Identities=18%  Similarity=0.144  Sum_probs=164.2

Q ss_pred             CCCCCCEEeCCCCCCCCC-CC-ccccCCCCCCCEEeCCCCcCCCCcCccc--cCCCCCCEEEccCCcCCCccc----ccc
Q 041016          108 RIRSLMTLDLSYNSMQGE-VP-GTGFANLTRLTYLDLKDNNLNGSIPSQL--FNLRYLEFLDLSANAIEGKLS----SRV  179 (757)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~-i~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~~----~~~  179 (757)
                      +...++.+.+.++.++.. +. ...+..+++|++|++++|.+++..|..+  ..+++|++|++++|.+.+..+    ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            334567777777766532 00 0112234668888888888888888777  788888888888888876444    344


Q ss_pred             cCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccc--c--CccccCCCCCCEEEccCCcCcccCcc----cc
Q 041016          180 AGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG--I--PLSLLQLRKLETLDLQRNSLSGEIPE----DI  251 (757)
Q Consensus       180 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~----~l  251 (757)
                      ..+++|++|++++|.+.+..+..|+.+++|++|++++|++.+.  +  +..+..+++|++|++++|.++.. +.    .+
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHH
Confidence            5788888888888888877778888888888888888887542  2  22346788888888888888632 22    24


Q ss_pred             cCCCCCCEEEccCCCCCCccchhhhcC---CCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcc
Q 041016          252 GTLANITILALSNNALTGAIPQSIRNM---TKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCM  328 (757)
Q Consensus       252 ~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  328 (757)
                      ..+++|++|++++|.+++..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|+++.++.  +...+.
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~  295 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPE  295 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch--hhhCCC
Confidence            677888888888888887777777666   58888888888887 5566553  788888888888875533  455677


Q ss_pred             cceeecCCccCcc
Q 041016          329 LTELSLRSCSVRG  341 (757)
Q Consensus       329 L~~L~L~~~~~~~  341 (757)
                      |++|++++|.++.
T Consensus       296 L~~L~L~~N~l~~  308 (310)
T 4glp_A          296 VDNLTLDGNPFLV  308 (310)
T ss_dssp             CSCEECSSTTTSC
T ss_pred             ccEEECcCCCCCC
Confidence            8888888887764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=3.6e-21  Score=186.92  Aligned_cols=185  Identities=28%  Similarity=0.310  Sum_probs=146.9

Q ss_pred             CcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCC
Q 041016           66 CCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN  145 (757)
Q Consensus        66 ~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n  145 (757)
                      .|+|.+|.|...+..                    .++..  -.++|++|++++|.++ .++...|+++++|++|++++|
T Consensus         6 ~C~~~~v~c~~~~l~--------------------~~p~~--~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n   62 (208)
T 2o6s_A            6 SCSGTTVECYSQGRT--------------------SVPTG--IPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGN   62 (208)
T ss_dssp             EEETTEEECCSSCCS--------------------SCCSC--CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSS
T ss_pred             EECCCEEEecCCCcc--------------------CCCCC--CCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCC
Confidence            389999999863211                    11221  2358899999999998 455477889999999999999


Q ss_pred             cCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCc
Q 041016          146 NLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPL  225 (757)
Q Consensus       146 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  225 (757)
                      .+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+.
T Consensus        63 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           63 KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence            99866666778899999999999999887777788899999999999998877777788888999999999988876666


Q ss_pred             cccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCC
Q 041016          226 SLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTK  280 (757)
Q Consensus       226 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  280 (757)
                      .+..+++|++|++++|.+.+       .+++|++|+++.|.++|.+|..++.++.
T Consensus       143 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             HhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence            68888888899888887654       3557788888888888888887776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=2.9e-20  Score=205.86  Aligned_cols=209  Identities=26%  Similarity=0.389  Sum_probs=165.2

Q ss_pred             CCCCCCCCCc-----cccee-eeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCcccc
Q 041016           58 ETWNSSSDCC-----RWEMV-RCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGF  131 (757)
Q Consensus        58 ~~w~~~~~~c-----~w~gv-~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~  131 (757)
                      .+|..+.++|     .|.|+ .|..    .+++.+++++.     .+.+ +|..+  +++|++|+|++|.++ .+|    
T Consensus        34 ~~W~~~~~~~~~~~~~~~~l~~C~~----~~L~~L~Ls~n-----~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----   96 (571)
T 3cvr_A           34 DKWEKQALPGENRNEAVSLLKECLI----NQFSELQLNRL-----NLSS-LPDNL--PPQITVLEITQNALI-SLP----   96 (571)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHHHHHH----TTCSEEECCSS-----CCSC-CCSCC--CTTCSEEECCSSCCS-CCC----
T ss_pred             HHHhccCCccccccchhhhcccccc----CCccEEEeCCC-----CCCc-cCHhH--cCCCCEEECcCCCCc-ccc----
Confidence            3565555677     79999 7863    47888999886     5555 55555  378999999999998 677    


Q ss_pred             CCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016          132 ANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK  211 (757)
Q Consensus       132 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  211 (757)
                      ..+++|++|++++|.+++ +|. +.+  +|++|++++|.+++ +|.   .+++|++|++++|.+++ +|.   .+++|++
T Consensus        97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~  164 (571)
T 3cvr_A           97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV  164 (571)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred             cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence            457899999999999986 777 665  89999999999987 444   68899999999999986 555   5788999


Q ss_pred             EEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCC-------CEEEccCCCCCCccchhhhcCCCCCEE
Q 041016          212 LSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI-------TILALSNNALTGAIPQSIRNMTKLVTL  284 (757)
Q Consensus       212 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L  284 (757)
                      |++++|.+++ +|. +.  ++|++|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|
T Consensus       165 L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          165 LSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI  235 (571)
T ss_dssp             EECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEE
T ss_pred             EECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEE
Confidence            9999999986 666 65  89999999999988 5665 544  67       89999999988 578878889999999


Q ss_pred             EccCCccccccchhhhccCC
Q 041016          285 RLDSNVLSGEISTWLFDLQG  304 (757)
Q Consensus       285 ~L~~n~l~~~~~~~l~~l~~  304 (757)
                      ++++|.+++.+|..+..+..
T Consensus       236 ~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          236 ILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             ECCSSSCCHHHHHHHHHHHH
T ss_pred             EeeCCcCCCcCHHHHHHhhc
Confidence            99999998888888776543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.9e-19  Score=177.24  Aligned_cols=162  Identities=28%  Similarity=0.262  Sum_probs=89.0

Q ss_pred             CCCCCCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCC
Q 041016           59 TWNSSSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLT  138 (757)
Q Consensus        59 ~w~~~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~  138 (757)
                      .|..+...|+|.+|.|+..+.                    ..+|..+  .++|++|+|++|.+++..| ..|..+++|+
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~~l--------------------~~ip~~~--~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~   67 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSKRH--------------------ASVPAGI--PTNAQILYLHDNQITKLEP-GVFDSLINLK   67 (229)
T ss_dssp             CCCCTTCEEETTEEECTTSCC--------------------SSCCSCC--CTTCSEEECCSSCCCCCCT-TTTTTCTTCC
T ss_pred             ccCCCCCEEeCCEeEccCCCc--------------------CccCCCC--CCCCCEEEcCCCccCccCH-HHhhCccCCc
Confidence            455567889999999986311                    1122212  1556666666666664444 5566666666


Q ss_pred             EEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccc
Q 041016          139 YLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNK  218 (757)
Q Consensus       139 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  218 (757)
                      +|+|++|.++...+..|..+++|++|+|++|++++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.
T Consensus        68 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           68 ELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSC
T ss_pred             EEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCc
Confidence            6666666665444444555666666666666655554445555555555555555555 344445555555555555555


Q ss_pred             cccccCccccCCCCCCEEEccCCcCc
Q 041016          219 FSGGIPLSLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       219 l~~~~~~~l~~l~~L~~L~l~~n~l~  244 (757)
                      +++..+..+..+++|++|++++|.+.
T Consensus       147 l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          147 LKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            54333344444444444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=1.1e-19  Score=176.49  Aligned_cols=181  Identities=23%  Similarity=0.209  Sum_probs=157.2

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      +.++.+++.++ .+| ..  -.++|++|++++|.+++..+..+.++++|++|++++|++++..+..|.++++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p-~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVP-TG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCC-SC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCC-CC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            46777777776 566 32  346999999999999977777789999999999999999988888889999999999999


Q ss_pred             ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccc
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP  272 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  272 (757)
                      |.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+   
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---  162 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---  162 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence            99997777778999999999999999997777778999999999999999997777778999999999999998764   


Q ss_pred             hhhhcCCCCCEEEccCCccccccchhhhccCC
Q 041016          273 QSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG  304 (757)
Q Consensus       273 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  304 (757)
                          .+++|+.|+++.|.++|.+|.+++.++.
T Consensus       163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          163 ----TCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             ----CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             ----CCCCHHHHHHHHHhCCceeeccCccccC
Confidence                3568899999999999999988776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=2.8e-20  Score=196.09  Aligned_cols=223  Identities=17%  Similarity=0.133  Sum_probs=136.1

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCc-cccCCCCCCE-EEccCCcCCCcccccccCCCCCCE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPS-QLFNLRYLEF-LDLSANAIEGKLSSRVAGLKNLKQ  187 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~  187 (757)
                      +++++|+|++|+++ .+|..+|.++++|++|+|++|.+.+.+|. +|.+++++++ +.+++|+++.+.+..|.++++|++
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            56788888888886 56656778888888888888877655553 5667777664 555667777776777777777777


Q ss_pred             EEccCccCCccCchhccCCCCCCEEEccc-cccccccCccccCCC-CCCEEEccCCcCcccCcccccCCCCCCEEEccC-
Q 041016          188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQ-NKFSGGIPLSLLQLR-KLETLDLQRNSLSGEIPEDIGTLANITILALSN-  264 (757)
Q Consensus       188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-  264 (757)
                      |++++|.++...+..+....++..+++.+ +.+....+..|..+. .+++|++++|+++. ++.......+|+++++.+ 
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTC
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccC
Confidence            77777777765555565666666777654 345444444455443 46667777776663 333333445666666654 


Q ss_pred             CCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcc
Q 041016          265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIP  344 (757)
Q Consensus       265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~  344 (757)
                      |.++...+..|+++++|++|++++|+++...+.   .+.+|+.|.+.++                        .--..+|
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~------------------------~~l~~lP  240 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARST------------------------YNLKKLP  240 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTC------------------------TTCCCCC
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccC------------------------CCcCcCC
Confidence            344433334456666666666666666533222   2334444443332                        2113455


Q ss_pred             hhccCCCCCCEEEccCCc
Q 041016          345 LWLSTQTELTFLDLSENE  362 (757)
Q Consensus       345 ~~l~~~~~L~~L~l~~n~  362 (757)
                      . +..+++|+.+++.++.
T Consensus       241 ~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          241 T-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             C-TTTCCSCCEEECSCHH
T ss_pred             C-chhCcChhhCcCCCCc
Confidence            3 6778888888887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.7e-19  Score=190.13  Aligned_cols=238  Identities=19%  Similarity=0.155  Sum_probs=165.9

Q ss_pred             EEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcc-cccccCCCCCCE-EEcc
Q 041016          114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKL-SSRVAGLKNLKQ-LILD  191 (757)
Q Consensus       114 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~-L~L~  191 (757)
                      +++.++++++ .|| ..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+ +..|.++++++. +.++
T Consensus        13 ~v~C~~~~Lt-~iP-~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           13 VFLCQESKVT-EIP-SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EEEEESTTCC-SCC-TTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             EEEecCCCCC-ccC-cCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            4556666776 677 333  367899999999998554567889999999999999886644 456788888775 5666


Q ss_pred             CccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccC-CcCcccCcccccCCC-CCCEEEccCCCCCC
Q 041016          192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQR-NSLSGEIPEDIGTLA-NITILALSNNALTG  269 (757)
Q Consensus       192 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~  269 (757)
                      +|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            7888877788888899999999999988866666666777788888865 456655455555554 57778888888774


Q ss_pred             ccchhhhcCCCCCEEEccC-CccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhcc
Q 041016          270 AIPQSIRNMTKLVTLRLDS-NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS  348 (757)
Q Consensus       270 ~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  348 (757)
                       ++.......+|+++++.+ |.++...+..|..+++|++|++++|+++                         .+|.  .
T Consensus       169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-------------------------~lp~--~  220 (350)
T 4ay9_X          169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-------------------------SLPS--Y  220 (350)
T ss_dssp             -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-------------------------CCCS--S
T ss_pred             -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-------------------------ccCh--h
Confidence             444444456677777765 4444333345667777777777777766                         3333  2


Q ss_pred             CCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCC
Q 041016          349 TQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDN  384 (757)
Q Consensus       349 ~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n  384 (757)
                      .+.+|+.|.+.++.--..+|. +..+. |+.+++.++
T Consensus       221 ~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          221 GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence            355677777766655556664 55665 999998765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.7e-19  Score=198.13  Aligned_cols=181  Identities=27%  Similarity=0.415  Sum_probs=106.2

Q ss_pred             CCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCC
Q 041016          447 RLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDN  525 (757)
Q Consensus       447 ~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  525 (757)
                      +++.|++++|.+++ +| .+  .++|++|++++|+++ .                      +|   ..+++|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~----------------------ip---~~l~~L~~L~Ls~N  110 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-S----------------------LP---ELPASLEYLDACDN  110 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-C----------------------CC---CCCTTCCEEECCSS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-c----------------------cc---cccCCCCEEEccCC
Confidence            77788887777765 44 23  255666666666655 2                      23   23456666666666


Q ss_pred             cccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCC
Q 041016          526 NLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSF  605 (757)
Q Consensus       526 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~  605 (757)
                      .+++ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .                    
T Consensus       111 ~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~--------------------  158 (571)
T 3cvr_A          111 RLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L--------------------  158 (571)
T ss_dssp             CCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C--------------------
T ss_pred             CCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c--------------------
Confidence            6664 444 433  66666666666665 343   45666666666666654 332   1                    


Q ss_pred             ccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCC------
Q 041016          606 PVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEIL------  679 (757)
Q Consensus       606 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L------  679 (757)
                                            ++.|+.|+|++|++++ +|. |.  ++|++|+|++|+|+ .+|. |..  +|      
T Consensus       159 ----------------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~  208 (571)
T 3cvr_A          159 ----------------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEET  208 (571)
T ss_dssp             ----------------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------C
T ss_pred             ----------------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccccc
Confidence                                  2334666666666664 444 44  66666777777666 4444 443  55      


Q ss_pred             -CEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016          680 -ETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE  719 (757)
Q Consensus       680 -~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  719 (757)
                       +.|+|++|.|+ .+|..+..+++|++|++++|+++|.+|.
T Consensus       209 L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          209 EIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             ceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence             66777777766 3555555667777777777777666653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=5.3e-19  Score=172.78  Aligned_cols=156  Identities=22%  Similarity=0.297  Sum_probs=127.3

Q ss_pred             CEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccC-cccCCCCCCCEEECcCCcccccCCcccccccccccCCCCC
Q 041016          518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSIT-DGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSIL  596 (757)
Q Consensus       518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~  596 (757)
                      +.+++++|.++ .+|..+.  ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|       
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV-------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC-------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC-------
Confidence            46777777776 3554442  456788888888876644 457788888888888888887776666665544       


Q ss_pred             CCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC
Q 041016          597 PTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL  676 (757)
Q Consensus       597 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  676 (757)
                                                         +.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+
T Consensus        84 -----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  128 (220)
T 2v70_A           84 -----------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL  128 (220)
T ss_dssp             -----------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred             -----------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence                                               788888888887778889999999999999999998889999999


Q ss_pred             CCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016          677 EILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP  718 (757)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  718 (757)
                      ++|++|+|++|++++..|..|..+++|++|++++|++.+..+
T Consensus       129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999999999999999889999999999999999999987665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=8e-19  Score=171.50  Aligned_cols=153  Identities=24%  Similarity=0.328  Sum_probs=116.2

Q ss_pred             CEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCC
Q 041016          518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILP  597 (757)
Q Consensus       518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~  597 (757)
                      +.++++++.++ .+|..+.  ++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|        
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L--------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL--------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC--------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC--------
Confidence            45666676666 3444333  567777777777776666677777777777777777777667666655444        


Q ss_pred             CCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCC
Q 041016          598 TLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLE  677 (757)
Q Consensus       598 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  677 (757)
                                                        +.|+|++|+++...+..|.++++|++|+|++|++++..|..|..++
T Consensus        83 ----------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  128 (220)
T 2v9t_B           83 ----------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH  128 (220)
T ss_dssp             ----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ----------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC
Confidence                                              7778888888766666678888888888888888888888888888


Q ss_pred             CCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016          678 ILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG  715 (757)
Q Consensus       678 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  715 (757)
                      +|++|+|++|.+++..+..|..+++|++|++++|++..
T Consensus       129 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          129 NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            88888888888888877788888888888888888865

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=169.60  Aligned_cols=134  Identities=22%  Similarity=0.238  Sum_probs=76.7

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016          111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL  190 (757)
Q Consensus       111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  190 (757)
                      .+++|+|++|.+++..+...|.++++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            34566666666654434344566666666666666666555555666666666666666665555555555555555555


Q ss_pred             cCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc
Q 041016          191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  244 (757)
                      ++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+.
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            555555555555555555555555555555544555555555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.7e-18  Score=177.09  Aligned_cols=170  Identities=26%  Similarity=0.368  Sum_probs=86.6

Q ss_pred             CCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEE
Q 041016          133 NLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKL  212 (757)
Q Consensus       133 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  212 (757)
                      .+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +.++++|++|++++|.+++ + ..+..+++|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence            44455555555555442 22 24445555555555555544333  4555555555555555543 1 225555555555


Q ss_pred             EccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccc
Q 041016          213 SLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS  292 (757)
Q Consensus       213 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  292 (757)
                      ++++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.++
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            5555555432  2345555555555555555543  345555555555555555554333  555555666666555555


Q ss_pred             cccchhhhccCCCcEEEccCCCCc
Q 041016          293 GEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       293 ~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      +. + .+..+++|+.|++++|.+.
T Consensus       192 ~l-~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          192 DL-R-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             BC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred             CC-h-hhccCCCCCEEECcCCccc
Confidence            32 2 2555556666666665554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=2.4e-18  Score=175.95  Aligned_cols=182  Identities=25%  Similarity=0.314  Sum_probs=138.6

Q ss_pred             CCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCc
Q 041016          478 SNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD  557 (757)
Q Consensus       478 ~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  557 (757)
                      .+.+.+..+..-...++.|++++|.+...  ..+..+++|++|++++|++++..+  +..+++|++|++++|.+.+ + .
T Consensus        33 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~  106 (291)
T 1h6t_A           33 KKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-S  106 (291)
T ss_dssp             CSCTTSEECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-G
T ss_pred             CCCcccccchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-h
Confidence            33333333333334466677777766644  247788899999999999886555  8888999999999999875 2 3


Q ss_pred             ccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECc
Q 041016          558 GLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLS  637 (757)
Q Consensus       558 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls  637 (757)
                      .+..+++|++|++++|++++.  ..+..                                          ++.|+.|+++
T Consensus       107 ~l~~l~~L~~L~L~~n~i~~~--~~l~~------------------------------------------l~~L~~L~l~  142 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNGISDI--NGLVH------------------------------------------LPQLESLYLG  142 (291)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC--GGGGG------------------------------------------CTTCCEEECC
T ss_pred             hhccCCCCCEEECCCCcCCCC--hhhcC------------------------------------------CCCCCEEEcc
Confidence            488899999999999988753  23333                                          3445889999


Q ss_pred             CCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016          638 NNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG  715 (757)
Q Consensus       638 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  715 (757)
                      +|++++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|.+++. | .+..+++|+.|++++|+++.
T Consensus       143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            9999865  578889999999999999987655  88899999999999999864 4 48889999999999999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=4.2e-18  Score=167.55  Aligned_cols=156  Identities=25%  Similarity=0.313  Sum_probs=115.6

Q ss_pred             CCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCC
Q 041016          517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSIL  596 (757)
Q Consensus       517 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~  596 (757)
                      .+.++.+++.++ .+|..+.  ++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|       
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L-------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL-------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc-------
Confidence            345666666665 4444332  677777777777777667777777777777777777764444444444333       


Q ss_pred             CCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC
Q 041016          597 PTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL  676 (757)
Q Consensus       597 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  676 (757)
                                                         +.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+
T Consensus        91 -----------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  134 (229)
T 3e6j_A           91 -----------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL  134 (229)
T ss_dssp             -----------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGC
T ss_pred             -----------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccC
Confidence                                               77788888887666667788888888999888888 667788888


Q ss_pred             CCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCC
Q 041016          677 EILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP  718 (757)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP  718 (757)
                      ++|++|+|++|++++..+..|..+++|++|++++|++.+..+
T Consensus       135 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            889999999998887777788888899999999998887654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=4.8e-18  Score=165.98  Aligned_cols=151  Identities=25%  Similarity=0.294  Sum_probs=88.5

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      +.++++++.++ .+| ..+.  ++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP-~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIP-TNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCS-SCC-SSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcC-cCC-CccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            46777777765 555 2222  5667777777776655555666666666666666666665566666666666666666


Q ss_pred             ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL  267 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  267 (757)
                      |.++...+..|..+++|++|+|++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            666644444455556666666666655555555555555555555555555544444444455555555555444

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=4.7e-18  Score=179.77  Aligned_cols=175  Identities=25%  Similarity=0.212  Sum_probs=106.0

Q ss_pred             EEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       114 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      +++++++.++ .+| ..+  .+.+++|+|++|.+++..+..+. ++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        22 ~l~c~~~~l~-~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           22 ILSCSKQQLP-NVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EEECCSSCCS-SCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCCcC-ccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            3455555554 355 222  23466666666666655555555 666666666666666666556666666666666666


Q ss_pred             ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccc---cCCCCCCEEEccCCCCCC
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI---GTLANITILALSNNALTG  269 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~  269 (757)
                      |++++..+..|..+++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..+   ..+++|+.|+|++|.+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            66665555566666666666666666666556666666666667766666664433333   456666777777776665


Q ss_pred             ccchhhhcCCC--CCEEEccCCccc
Q 041016          270 AIPQSIRNMTK--LVTLRLDSNVLS  292 (757)
Q Consensus       270 ~~~~~l~~l~~--L~~L~L~~n~l~  292 (757)
                      ..+..+..++.  ++.|++++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            54455665554  356666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=2.8e-18  Score=192.27  Aligned_cols=174  Identities=30%  Similarity=0.374  Sum_probs=121.6

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016          106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL  185 (757)
Q Consensus       106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  185 (757)
                      +..+++|+.|++++|.+. .++  .+..+++|++|+|++|.+++..|  +..+++|++|+|++|.+.+.  ..+..+++|
T Consensus        39 ~~~L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L  111 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKL  111 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTC
T ss_pred             hhcCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCC
Confidence            445667777777777776 343  36777777778877777775443  77777777777777777653  257777777


Q ss_pred             CEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCC
Q 041016          186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNN  265 (757)
Q Consensus       186 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n  265 (757)
                      ++|+|++|.+.+.  ..+..+++|++|+|++|.+++.  ..+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|
T Consensus       112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence            7777777777642  3477777777777777777654  456777777777777777776544  677777777777777


Q ss_pred             CCCCccchhhhcCCCCCEEEccCCccccc
Q 041016          266 ALTGAIPQSIRNMTKLVTLRLDSNVLSGE  294 (757)
Q Consensus       266 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  294 (757)
                      .+++.  +.+..+++|+.|++++|.+.+.
T Consensus       186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          186 HISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            77653  3567777777777777776643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=5e-18  Score=179.61  Aligned_cols=176  Identities=27%  Similarity=0.288  Sum_probs=154.4

Q ss_pred             CEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccccc-CCCCCCEEEccCccCCccCchhccCCCCCCEEEccc
Q 041016          138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVA-GLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ  216 (757)
Q Consensus       138 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  216 (757)
                      +.++++++.++ .+|..+.  +.+++|+|++|.+++..+..|. ++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            68999999998 6787665  4689999999999988888887 999999999999999988888899999999999999


Q ss_pred             cccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhh---hcCCCCCEEEccCCcccc
Q 041016          217 NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSI---RNMTKLVTLRLDSNVLSG  293 (757)
Q Consensus       217 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~  293 (757)
                      |++++..+..|.++++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|   ..+++|+.|++++|.+++
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            99998777889999999999999999998888999999999999999999996555555   568999999999999997


Q ss_pred             ccchhhhccCC--CcEEEccCCCCc
Q 041016          294 EISTWLFDLQG--MKSLYLGGNKLK  316 (757)
Q Consensus       294 ~~~~~l~~l~~--L~~L~L~~n~l~  316 (757)
                      ..+..+..++.  ++.|++++|.+.
T Consensus       178 l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          178 LPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCHHHhhhccHhhcceEEecCCCcc
Confidence            76677777776  478888888876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=7.8e-18  Score=188.68  Aligned_cols=194  Identities=25%  Similarity=0.324  Sum_probs=165.5

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      ..+..++++.+.+.+.++   +..+++|++|++++|.+. .+| .+..+++|++|+|++|.+.+..+  +..+++|+.|+
T Consensus        21 ~~l~~l~l~~~~i~~~~~---~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~   93 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC---HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             HHHHHHhccCCCcccccc---hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence            345556777777765443   567899999999999998 444 58999999999999999997765  89999999999


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG  269 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  269 (757)
                      |++|.+.+ + ..+..+++|++|+|++|.+.+.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+.+
T Consensus        94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A           94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred             CcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence            99999985 3 3799999999999999999853  4588999999999999999865  678999999999999999997


Q ss_pred             ccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCc
Q 041016          270 AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDN  320 (757)
Q Consensus       270 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  320 (757)
                      ..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+...+.
T Consensus       168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred             chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence            766  89999999999999999864  358899999999999998875433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=5.6e-18  Score=162.66  Aligned_cols=154  Identities=19%  Similarity=0.361  Sum_probs=124.8

Q ss_pred             cCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCccccccccccc
Q 041016          512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID  591 (757)
Q Consensus       512 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~  591 (757)
                      ..+++|++|++++|.++ .+| .+..+++|++|++++|.+.  .+..+..+++|++|++++|.+++..|..+..+++|  
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL--  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC--
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC--
Confidence            56778888999988888 455 5788889999999998665  33478888999999999999887777776655444  


Q ss_pred             CCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCC-CCccCC
Q 041016          592 TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQ-LQGNIP  670 (757)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p  670 (757)
                                                              +.|++++|++++..|..+..+++|++|++++|+ ++ .+|
T Consensus       115 ----------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~  153 (197)
T 4ezg_A          115 ----------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM  153 (197)
T ss_dssp             ----------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG
T ss_pred             ----------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH
Confidence                                                    889999999988888889999999999999998 65 455


Q ss_pred             cchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCccee
Q 041016          671 STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG  715 (757)
Q Consensus       671 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  715 (757)
                       .+..+++|++|++++|++++. + .+..+++|++|++++|++.+
T Consensus       154 -~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          154 -PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             -hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence             689999999999999999864 3 78899999999999999864

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=7.3e-18  Score=169.51  Aligned_cols=175  Identities=23%  Similarity=0.295  Sum_probs=143.2

Q ss_pred             CCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCC
Q 041016          485 VPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTS  564 (757)
Q Consensus       485 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~  564 (757)
                      .|..-...+..++++++.+++..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++
T Consensus        13 ~pd~~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~   86 (263)
T 1xeu_A           13 FPDPGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTK   86 (263)
T ss_dssp             CCSHHHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSS
T ss_pred             CCCHHHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCC
Confidence            34433334666778888887554  57889999999999999984 45 68889999999999999986555  899999


Q ss_pred             CCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCc
Q 041016          565 LQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGE  644 (757)
Q Consensus       565 L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~  644 (757)
                      |++|++++|++++. |...                                            .+.|+.|++++|++++.
T Consensus        87 L~~L~L~~N~l~~l-~~~~--------------------------------------------~~~L~~L~L~~N~l~~~  121 (263)
T 1xeu_A           87 LEELSVNRNRLKNL-NGIP--------------------------------------------SACLSRLFLDNNELRDT  121 (263)
T ss_dssp             CCEEECCSSCCSCC-TTCC--------------------------------------------CSSCCEEECCSSCCSBS
T ss_pred             CCEEECCCCccCCc-Cccc--------------------------------------------cCcccEEEccCCccCCC
Confidence            99999999998753 2211                                            13458999999999864


Q ss_pred             CCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceec
Q 041016          645 IPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGR  716 (757)
Q Consensus       645 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  716 (757)
                       + .+..+++|++|++++|++++.  ..+..+++|++|++++|++++.  ..+..+++|++|++++|++++.
T Consensus       122 -~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          122 -D-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -G-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             -h-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence             3 589999999999999999976  3689999999999999999987  6788999999999999999875

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2.4e-17  Score=158.25  Aligned_cols=104  Identities=20%  Similarity=0.320  Sum_probs=39.2

Q ss_pred             CCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEE
Q 041016          134 LTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS  213 (757)
Q Consensus       134 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  213 (757)
                      +++|++|++++|.++ .+| .+..+++|++|++++|.+..  +..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            334444444444443 222 23344444444444443221  11333333333333333333333333333333333343


Q ss_pred             ccccccccccCccccCCCCCCEEEccCC
Q 041016          214 LRQNKFSGGIPLSLLQLRKLETLDLQRN  241 (757)
Q Consensus       214 L~~n~l~~~~~~~l~~l~~L~~L~l~~n  241 (757)
                      +++|.+++..+..+..+++|++|++++|
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence            3333333333333333333333333333

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.72  E-value=6.1e-19  Score=202.91  Aligned_cols=260  Identities=19%  Similarity=0.200  Sum_probs=130.4

Q ss_pred             CcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCC-CCCCcccceeeeCCCCCcccEEEEEcCCCCCCCCcceeecc
Q 041016           25 CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNS-SSDCCRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVL  103 (757)
Q Consensus        25 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~  103 (757)
                      ..+.++++|+++.....+..         ...-..|.. .+..+.|.+++++.    .+++.++|.+.     .+.. .+
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~----~~~~~l~L~~n-----~~~~-~~  189 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSK---------TAKKQQPTGDSTPSGTATNSAVST----PLTPKIELFAN-----GKDE-AN  189 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHH---------TTC------------------------------------------------
T ss_pred             ccccchhhhhhhhhhccccc---------CcccCCCcCCCCccccCCCceecC----CccceEEeeCC-----CCCc-ch
Confidence            34567899999998775221         122335643 34567899888864    57888888764     2222 22


Q ss_pred             ccccCCCCCCE-----EeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccc
Q 041016          104 APIFRIRSLMT-----LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSR  178 (757)
Q Consensus       104 ~~l~~l~~L~~-----L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  178 (757)
                      ..+.....|+.     ++++.|.+.  ++...|..+++|++|+|++|.+. .+|..++++++|++|+|++|.++ .+|..
T Consensus       190 ~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~  265 (727)
T 4b8c_D          190 QALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAE  265 (727)
T ss_dssp             ----------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGG
T ss_pred             hhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChh
Confidence            22222222222     233333333  33377888999999999999988 78888889999999999999998 67788


Q ss_pred             ccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCC-C
Q 041016          179 VAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN-I  257 (757)
Q Consensus       179 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L  257 (757)
                      |.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|..+..+.. +
T Consensus       266 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~  343 (727)
T 4b8c_D          266 IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG  343 (727)
T ss_dssp             GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH
T ss_pred             hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh
Confidence            899999999999999988 67888999999999999999887 67878899999999999999998888877754422 2


Q ss_pred             CEEEccCCCCCCccchhhhcCCCCCEEEccCC--------ccccccchhhhccCCCcEEEccCCCC
Q 041016          258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSN--------VLSGEISTWLFDLQGMKSLYLGGNKL  315 (757)
Q Consensus       258 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--------~l~~~~~~~l~~l~~L~~L~L~~n~l  315 (757)
                      ..+++++|.+++.+|..      |+.|+++.|        .+.+..+..+..+..++...+++|.+
T Consensus       344 ~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          344 LIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             HHHHHHHCCCCCCCCCC-----------------------------------------------CC
T ss_pred             hHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence            24678888888877754      445555555        22223333334444455555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=8.7e-20  Score=203.38  Aligned_cols=121  Identities=26%  Similarity=0.351  Sum_probs=70.4

Q ss_pred             CCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCc
Q 041016          541 LQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSK  620 (757)
Q Consensus       541 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  620 (757)
                      |+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++++++|                               
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-------------------------------  488 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL-------------------------------  488 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC-------------------------------
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC-------------------------------
Confidence            5556666665554 343 555666666666666655 445554444333                               


Q ss_pred             cccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccC-CcchhCCCCCCEEeCCCCcCccCCCCC---
Q 041016          621 RGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNI-PSTFGNLEILETLDLSHNSLSGKIPQT---  696 (757)
Q Consensus       621 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---  696 (757)
                                 +.|+|++|++++ +| .++++++|++|+|++|++++.+ |..|+.+++|+.|+|++|.+++.+|..   
T Consensus       489 -----------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l  555 (567)
T 1dce_A          489 -----------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL  555 (567)
T ss_dssp             -----------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH
T ss_pred             -----------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH
Confidence                       556666666654 44 5666666666666666666655 666666666666666666666554422   


Q ss_pred             ccCCCCCCEEeC
Q 041016          697 FAKLQQLTSLYL  708 (757)
Q Consensus       697 l~~l~~L~~L~l  708 (757)
                      +..+++|+.||+
T Consensus       556 ~~~lp~L~~L~l  567 (567)
T 1dce_A          556 AEMLPSVSSILT  567 (567)
T ss_dssp             HHHCTTCSEEEC
T ss_pred             HHHCcccCccCC
Confidence            223566666653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.71  E-value=1.5e-17  Score=158.71  Aligned_cols=87  Identities=30%  Similarity=0.431  Sum_probs=47.9

Q ss_pred             CeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCC
Q 041016          632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN  711 (757)
Q Consensus       632 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  711 (757)
                      +.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|
T Consensus        57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            44445555554444555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cceecCC
Q 041016          712 KLSGRIP  718 (757)
Q Consensus       712 ~l~g~iP  718 (757)
                      ++.+..|
T Consensus       137 ~l~c~c~  143 (192)
T 1w8a_A          137 PFNCNCH  143 (192)
T ss_dssp             CBCCSGG
T ss_pred             CccCcCc
Confidence            5555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=1.7e-19  Score=200.95  Aligned_cols=198  Identities=21%  Similarity=0.232  Sum_probs=136.3

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCc-------------CCCCcCccccCCCCCCEEE-ccCCcC
Q 041016          106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN-------------LNGSIPSQLFNLRYLEFLD-LSANAI  171 (757)
Q Consensus       106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-Ls~n~l  171 (757)
                      +..+++|+.|+|++|.+. .+| ..++++++|+.|++++|.             ..+.+|..++.+++|+.|+ ++.|.+
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp-~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             cccCccceeccCChhhHH-hhH-HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            356778888888888875 677 778888888888887664             4566677777777777777 555433


Q ss_pred             CCcccc-----cccC--CCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc
Q 041016          172 EGKLSS-----RVAG--LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       172 ~~~~~~-----~~~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  244 (757)
                      ......     .+..  ...|+.|++++|.+++ +|. ++.+++|++|+|++|.++ .+|..++++++|++|++++|.++
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence            211000     0000  1247778888887775 555 777777888888888777 66777777788888888888777


Q ss_pred             ccCcccccCCCCCCEEEccCCCCCCcc-chhhhcCCCCCEEEccCCccccccch---hhhccCCCcEEEc
Q 041016          245 GEIPEDIGTLANITILALSNNALTGAI-PQSIRNMTKLVTLRLDSNVLSGEIST---WLFDLQGMKSLYL  310 (757)
Q Consensus       245 ~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~L  310 (757)
                      + +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|.+++..+.   .+..+++|+.|++
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            5 45 6777777888888888777665 77777777788888887777765442   2334677777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.8e-17  Score=166.62  Aligned_cols=171  Identities=22%  Similarity=0.330  Sum_probs=111.5

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016          108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ  187 (757)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  187 (757)
                      .+..++.++++.+.+++ ++  .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+  +.++++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            34455666677777653 32  3666777777777777776 444 56777777777777777776544  777777777


Q ss_pred             EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016          188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL  267 (757)
Q Consensus       188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  267 (757)
                      |++++|++++ +|. +.. ++|++|++++|.+++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|.+
T Consensus        90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A           90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence            7777777764 332 222 6777777777777642  2466677777777777777653 2 566677777777777776


Q ss_pred             CCccchhhhcCCCCCEEEccCCccccc
Q 041016          268 TGAIPQSIRNMTKLVTLRLDSNVLSGE  294 (757)
Q Consensus       268 ~~~~~~~l~~l~~L~~L~L~~n~l~~~  294 (757)
                      ++.  ..+..+++|+.|++++|.+++.
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cch--HHhccCCCCCEEeCCCCcccCC
Confidence            654  5566666677777766666543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.2e-16  Score=152.50  Aligned_cols=132  Identities=26%  Similarity=0.351  Sum_probs=99.6

Q ss_pred             CEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCc-ccCCCCCCCEEECcCCcccccCCcccccccccccCCCCC
Q 041016          518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD-GLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSIL  596 (757)
Q Consensus       518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~  596 (757)
                      +.+++++|.++ .+|..+.  .+|++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|.++.+|       
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI-------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC-------
Confidence            56777777775 4554443  3777777777777765554 36777777888888887777777766655544       


Q ss_pred             CCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC
Q 041016          597 PTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL  676 (757)
Q Consensus       597 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  676 (757)
                                                         +.|+|++|++++..+..|.++++|++|+|++|++++.+|..|..+
T Consensus        81 -----------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  125 (192)
T 1w8a_A           81 -----------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL  125 (192)
T ss_dssp             -----------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred             -----------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence                                               777888888887777778888889999999999988888888888


Q ss_pred             CCCCEEeCCCCcCccCCC
Q 041016          677 EILETLDLSHNSLSGKIP  694 (757)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~p  694 (757)
                      ++|++|++++|.+.+..+
T Consensus       126 ~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          126 NSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TTCCEEECTTCCBCCSGG
T ss_pred             CCCCEEEeCCCCccCcCc
Confidence            999999999998887654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=5.4e-17  Score=186.74  Aligned_cols=191  Identities=20%  Similarity=0.270  Sum_probs=106.1

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCE-----EeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCC
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTY-----LDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN  184 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~-----L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  184 (757)
                      +.++.|+|+.|.+.. ++ ..+.....|+.     ++++.|.+. ..|..+..++.|++|+|++|.+. .+|..+.++++
T Consensus       173 ~~~~~l~L~~n~~~~-~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDE-AN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCc-ch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            457788888888764 34 22222222222     223333333 45677788888888888888887 45555557888


Q ss_pred             CCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccC
Q 041016          185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN  264 (757)
Q Consensus       185 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  264 (757)
                      |++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+.+++|++|+|++
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence            888888888888 67788888888888888888888 66888888888888888888886 6677788888888888888


Q ss_pred             CCCCCccchhhhcCCC-CCEEEccCCccccccchhhhccCCCcEEEccCC
Q 041016          265 NALTGAIPQSIRNMTK-LVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN  313 (757)
Q Consensus       265 n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  313 (757)
                      |.+++.+|..+..+.. +..+++++|.+++.+|.      .|+.|+++.|
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            8888877777755422 22366777777776664      3445555555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=5.9e-16  Score=144.38  Aligned_cols=132  Identities=25%  Similarity=0.211  Sum_probs=72.4

Q ss_pred             CCCCEEeCCCCCCC-CCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 041016          110 RSLMTLDLSYNSMQ-GEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL  188 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  188 (757)
                      ++|++|++++|.++ +.+| ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            55666666666665 4555 4456666666666666666543  455556666666666666655455555555555555


Q ss_pred             EccCccCCccC-chhccCCCCCCEEEccccccccccC---ccccCCCCCCEEEccCCcCc
Q 041016          189 ILDDNLIQGQI-PAEIGNLTNLHKLSLRQNKFSGGIP---LSLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       189 ~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~  244 (757)
                      ++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            55555555321 1445555555555555555553332   24445555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.2e-16  Score=166.81  Aligned_cols=260  Identities=15%  Similarity=0.090  Sum_probs=149.2

Q ss_pred             CCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccC--------CCCCCEEEccCCcCCCccccccc
Q 041016          109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFN--------LRYLEFLDLSANAIEGKLSSRVA  180 (757)
Q Consensus       109 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~~~~~~  180 (757)
                      +++|++|||++|++... . ..-+.++.++.+.+..+.+.   +.+|.+        |++|+.|+|.+ .++.+.+.+|.
T Consensus        48 l~~L~~LdLs~n~i~~~-~-~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~  121 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMY-S-GKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK  121 (329)
T ss_dssp             CTTCCEEEEEEEEECCE-E-ESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred             hccCeEEecCcceeEEe-c-CccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence            78899999999888611 0 01112223455555555322   345556        89999999988 78878888899


Q ss_pred             CCCCCCEEEccCccCCccCchhccCCCCCCEEEcccccc----ccccCccccCCCCCC-EEEccCCcCcccCcccc----
Q 041016          181 GLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF----SGGIPLSLLQLRKLE-TLDLQRNSLSGEIPEDI----  251 (757)
Q Consensus       181 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~l----  251 (757)
                      ++++|+.+++++|.+....+.+|..+.++.++.+..+..    ......+|.++..|+ .+.+....   .++..+    
T Consensus       122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~  198 (329)
T 3sb4_A          122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG  198 (329)
T ss_dssp             TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT
T ss_pred             cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc
Confidence            999999999999888877788888888888777765322    222344566666666 44443321   111111    


Q ss_pred             cCCCCCCEEEccCCCCCCccchhh-hcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccc
Q 041016          252 GTLANITILALSNNALTGAIPQSI-RNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLT  330 (757)
Q Consensus       252 ~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~  330 (757)
                      ....+++.+.+.++-.. .....+ ..+++|+++++++|.++......|.++++|+.+++..| ++.++...|..+..|+
T Consensus       199 ~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~  276 (329)
T 3sb4_A          199 LQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA  276 (329)
T ss_dssp             CCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence            12334444444443211 111111 12555555555555555444445555555555555555 5555555555555555


Q ss_pred             -eeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEE
Q 041016          331 -ELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVI  380 (757)
Q Consensus       331 -~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~  380 (757)
                       .+.+.+ .++...+..|.+|++|+.++++.|+++...+..|..+. |+.++
T Consensus       277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence             555555 44444455566666666666666666655555555554 55554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=6.9e-16  Score=143.90  Aligned_cols=134  Identities=26%  Similarity=0.244  Sum_probs=104.4

Q ss_pred             CCCCCCEEeCCCCcCC-CCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016          133 NLTRLTYLDLKDNNLN-GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK  211 (757)
Q Consensus       133 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  211 (757)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+.++++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3478999999999987 77888888889999999999988866  67788888888888888888767777777888888


Q ss_pred             EEcccccccccc-CccccCCCCCCEEEccCCcCcccCc---ccccCCCCCCEEEccCCCCC
Q 041016          212 LSLRQNKFSGGI-PLSLLQLRKLETLDLQRNSLSGEIP---EDIGTLANITILALSNNALT  268 (757)
Q Consensus       212 L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~  268 (757)
                      |++++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            888888887532 2567777788888888887775544   35667777777777777665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=6e-16  Score=141.12  Aligned_cols=127  Identities=24%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             CCCCEEeCCCCCCC-CCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEE
Q 041016          110 RSLMTLDLSYNSMQ-GEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQL  188 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  188 (757)
                      ++|++|++++|.++ +.+| ..+..+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..+.++++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            56677777777766 5566 4566677777777777766644  556666666666666666665555555556666666


Q ss_pred             EccCccCCcc-CchhccCCCCCCEEEccccccccccC---ccccCCCCCCEEEcc
Q 041016          189 ILDDNLIQGQ-IPAEIGNLTNLHKLSLRQNKFSGGIP---LSLLQLRKLETLDLQ  239 (757)
Q Consensus       189 ~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~  239 (757)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            6666666542 23455556666666666666554433   345555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=3.9e-15  Score=141.79  Aligned_cols=84  Identities=36%  Similarity=0.446  Sum_probs=64.4

Q ss_pred             CeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCC
Q 041016          632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN  711 (757)
Q Consensus       632 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  711 (757)
                      +.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.++...+..|..+++|++|++++|
T Consensus        57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            66666666666666667777788888888888888777777888888888888888888766667777888888888888


Q ss_pred             ccee
Q 041016          712 KLSG  715 (757)
Q Consensus       712 ~l~g  715 (757)
                      ++.+
T Consensus       137 ~~~C  140 (193)
T 2wfh_A          137 PLYC  140 (193)
T ss_dssp             CEEC
T ss_pred             Ceec
Confidence            8765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=7.8e-16  Score=140.34  Aligned_cols=129  Identities=24%  Similarity=0.263  Sum_probs=93.3

Q ss_pred             CCCCCCEEeCCCCcCC-CCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCE
Q 041016          133 NLTRLTYLDLKDNNLN-GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHK  211 (757)
Q Consensus       133 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  211 (757)
                      ..++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3477888888888887 67888888888888888888888765  66777778888888888777667777777777777


Q ss_pred             EEccccccccc-cCccccCCCCCCEEEccCCcCcccCc---ccccCCCCCCEEEcc
Q 041016          212 LSLRQNKFSGG-IPLSLLQLRKLETLDLQRNSLSGEIP---EDIGTLANITILALS  263 (757)
Q Consensus       212 L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~  263 (757)
                      |++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            77777777653 23566667777777777777665443   345566666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=1.2e-16  Score=166.69  Aligned_cols=284  Identities=12%  Similarity=0.075  Sum_probs=209.4

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCC-CCCCCEEeCCCCcCC--CCcCccccCCCCCCEEEccCCcCCCcccccccC---
Q 041016          108 RIRSLMTLDLSYNSMQGEVPGTGFAN-LTRLTYLDLKDNNLN--GSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAG---  181 (757)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~-l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---  181 (757)
                      .+.+++.|.++++--...+  ..+.. +++|++|||++|.+.  ...+.   .++.++.+.+..|.   +.+.+|.+   
T Consensus        23 ~~~~l~~L~l~g~i~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~   94 (329)
T 3sb4_A           23 EANSITHLTLTGKLNAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVN   94 (329)
T ss_dssp             HHHHCSEEEEEEEECHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEET
T ss_pred             hhCceeEEEEeccccHHHH--HHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccc
Confidence            3567888888753111011  12333 788999999999987  22222   22335566666663   44566777   


Q ss_pred             -----CCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCc----CcccCccccc
Q 041016          182 -----LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNS----LSGEIPEDIG  252 (757)
Q Consensus       182 -----l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~----l~~~~~~~l~  252 (757)
                           +++|+.+++.+ .++.+.+.+|.+|++|+++++++|.+....+.+|..+.++..+....+.    ........|.
T Consensus        95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A           95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence                 99999999999 8887788899999999999999999987888889988888877776532    2223344566


Q ss_pred             CCCCCC-EEEccCCCCCCccchhhh----cCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCc
Q 041016          253 TLANIT-ILALSNNALTGAIPQSIR----NMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKC  327 (757)
Q Consensus       253 ~l~~L~-~L~L~~n~l~~~~~~~l~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~  327 (757)
                      ++..|+ .+.+....   .++..+.    ...+++.+.+.++-...........+++|+.+++++|+++.++...|..+.
T Consensus       174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~  250 (329)
T 3sb4_A          174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK  250 (329)
T ss_dssp             ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred             cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence            777777 55554332   2333222    245677777766533322222223489999999999999999999999999


Q ss_pred             ccceeecCCccCccCcchhccCCCCCC-EEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeC
Q 041016          328 MLTELSLRSCSVRGSIPLWLSTQTELT-FLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVL  405 (757)
Q Consensus       328 ~L~~L~L~~~~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L  405 (757)
                      .|+++++.++ ++...+.+|.++++|+ .+++.+ .++...+..|..+. |+.++++.|.+....+..|.+|++|+.++.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            9999999998 7767778899999999 999998 77777778899987 999999999999887889999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=4.7e-15  Score=139.51  Aligned_cols=87  Identities=28%  Similarity=0.351  Sum_probs=69.2

Q ss_pred             CeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCC
Q 041016          632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN  711 (757)
Q Consensus       632 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  711 (757)
                      +.|++++|++++..+..|..+++|++|++++|++++.++..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            55566666666555556778888888888888888777777888888888899888888777777788888999999999


Q ss_pred             cceecCC
Q 041016          712 KLSGRIP  718 (757)
Q Consensus       712 ~l~g~iP  718 (757)
                      ++.+..|
T Consensus       135 ~~~~~~~  141 (177)
T 2o6r_A          135 PWDCSCP  141 (177)
T ss_dssp             CBCCCHH
T ss_pred             CeeccCc
Confidence            8888766

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=5e-15  Score=139.30  Aligned_cols=111  Identities=29%  Similarity=0.354  Sum_probs=68.9

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      ++|++|++++|.+++ ++...|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            467777777777763 4435566777777777777777655555566666666666666666655555556666666666


Q ss_pred             ccCccCCccCchhccCCCCCCEEEcccccccc
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG  221 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  221 (757)
                      +++|.+++..+..+..+++|++|++++|.+.+
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            66666654444444555556666665555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=6.5e-15  Score=140.29  Aligned_cols=127  Identities=27%  Similarity=0.331  Sum_probs=89.3

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      +++++++|.++ .+| ..+  .++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        13 ~~l~~~~~~l~-~ip-~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLP-KGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCC-SCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCC-CCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            35667777776 566 322  257788888888777 6677777777777777777777777667777777777777777


Q ss_pred             ccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCc
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  244 (757)
                      |.+++..|..|..+++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7777666666777777777777777776555555666666777776666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=4.2e-14  Score=150.54  Aligned_cols=265  Identities=12%  Similarity=0.111  Sum_probs=193.6

Q ss_pred             CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCE
Q 041016          108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQ  187 (757)
Q Consensus       108 ~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  187 (757)
                      .+..++.+.+.++ ++ .|+..+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+..+...+|.++++|+.
T Consensus       111 ~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~  184 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK  184 (401)
T ss_dssp             ECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred             ecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence            3467777777653 43 5666778775 6888888776 664555667664 688888875 666677778888888888


Q ss_pred             EEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCC
Q 041016          188 LILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNAL  267 (757)
Q Consensus       188 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  267 (757)
                      +++++|.++.....+|. +.+|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus       185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred             eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence            88888888765555666 578888888744 65566677888888888888764 45455556666 688888884 445


Q ss_pred             CCccchhhhcCCCCCEEEccCCccc-----cccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccC
Q 041016          268 TGAIPQSIRNMTKLVTLRLDSNVLS-----GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGS  342 (757)
Q Consensus       268 ~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~  342 (757)
                      +.....+|.++++|+.+.+.++.+.     ......|.++++|+.+++. +.++.++...|..+..|+.+.+..+ ++..
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            5555678888888888888777654     3455677888888888888 4577788888888888888888554 5555


Q ss_pred             cchhccCCCCCCEEEccCCcccCcccccccCcc--ccEEEcCCCcC
Q 041016          343 IPLWLSTQTELTFLDLSENELEGTYPQWLSELN--LGTVILSDNML  386 (757)
Q Consensus       343 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--L~~L~l~~n~l  386 (757)
                      ...+|.++ +|+.+++.+|.+....+..|..++  ++.+.+..+.+
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            56778888 899999988888766666676663  77888776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=4.3e-14  Score=150.43  Aligned_cols=268  Identities=10%  Similarity=0.091  Sum_probs=192.8

Q ss_pred             cCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCC
Q 041016          131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLH  210 (757)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  210 (757)
                      +..+..++.+.+.++ ++..-..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++...+.+|.+|++|+
T Consensus       109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            344577777777654 554555667765 6888888766 666777777774 688888876 56656667788888888


Q ss_pred             EEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCc
Q 041016          211 KLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV  290 (757)
Q Consensus       211 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  290 (757)
                      .+++..|.++.....+|. +.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+.
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~  258 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNG  258 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETT
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCC
Confidence            888888888755555555 578888888744 66566677888888888888764 45455566766 67888888 344


Q ss_pred             cccccchhhhccCCCcEEEccCCCCc-----CCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccC
Q 041016          291 LSGEISTWLFDLQGMKSLYLGGNKLK-----WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEG  365 (757)
Q Consensus       291 l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~  365 (757)
                      ++......|.++++|+.+++.++.+.     .++...|..+..|+.+.+.+ .++......|.+|++|+.+.+..+ ++.
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            55556677888888888888877665     56677778888888888874 466556677888888888888554 555


Q ss_pred             cccccccCccccEEEcCCCcCCCCCCCCccCC-CCCCEEeCcCccc
Q 041016          366 TYPQWLSELNLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNF  410 (757)
Q Consensus       366 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~L~~n~l  410 (757)
                      .....|..+.|+.+.+.+|......+..+..+ .+++.|++..+.+
T Consensus       337 I~~~aF~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          337 INFSAFNNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             ECTTSSSSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             EcHHhCCCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            55667777788888888887776556666666 3677888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.59  E-value=6.4e-14  Score=149.97  Aligned_cols=328  Identities=12%  Similarity=0.038  Sum_probs=155.5

Q ss_pred             ccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCC
Q 041016          104 APIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLK  183 (757)
Q Consensus       104 ~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  183 (757)
                      .+|.++++|+.+.+..+ ++ .|+..+|.+|++|+.+++..+ ++..-..+|.+++.|+.+.+..+ +..+...+|.++.
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~  140 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD  140 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred             HHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence            35666666666666532 43 455556666666666666543 43333445556666665555433 3333344454443


Q ss_pred             CCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEcc
Q 041016          184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALS  263 (757)
Q Consensus       184 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~  263 (757)
                      .++.......  ......+|.++++|+.+.+..+.. .....+|.++.+|+.+++..+ ++......|.++..|+.+.+.
T Consensus       141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~  216 (394)
T 4fs7_A          141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP  216 (394)
T ss_dssp             CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred             ccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence            3332222221  112234455555555555543322 133344555555555555433 222333344444444444443


Q ss_pred             CCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCc
Q 041016          264 NNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSI  343 (757)
Q Consensus       264 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~  343 (757)
                      .+                        ...  +........+|+.+.+... ++.+....+..+..++.+.+..+... ..
T Consensus       217 ~~------------------------~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~  268 (394)
T 4fs7_A          217 NS------------------------LYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IG  268 (394)
T ss_dssp             TT------------------------CCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-EC
T ss_pred             CC------------------------ceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-ee
Confidence            33                        221  1122223334444444321 22233333344444444444433221 23


Q ss_pred             chhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCC
Q 041016          344 PLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQST  422 (757)
Q Consensus       344 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~  422 (757)
                      ...|..+..++.+....+.+.   ...+.... |+.+.+.++ +...-..++.+|.+|+.+++..+ ++.....+|.++.
T Consensus       269 ~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~  343 (394)
T 4fs7_A          269 GSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT  343 (394)
T ss_dssp             SCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred             ccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence            344555556665555443321   11233332 555555433 32233345666677777777543 4444455677777


Q ss_pred             CccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEE
Q 041016          423 SVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHV  474 (757)
Q Consensus       423 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L  474 (757)
                      +|+.+++..+ ++.....+|.+|.+|+.+++..+--. .-.+|.++++|+.+
T Consensus       344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~~-~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          344 SLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLEQ-YRYDFEDTTKFKWI  393 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGGG-GGGGBCTTCEEEEE
T ss_pred             CCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCEE-hhheecCCCCCcEE
Confidence            7777777655 55455566777777777777654211 11156666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.55  E-value=1.8e-13  Score=146.36  Aligned_cols=322  Identities=12%  Similarity=0.077  Sum_probs=216.2

Q ss_pred             cEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCC
Q 041016           82 EVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYL  161 (757)
Q Consensus        82 ~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  161 (757)
                      .++.+.++.      .+...-..+|.++++|+.+++..+ ++ .|+..+|.++++|+.+.+..+ +......+|.++..+
T Consensus        72 ~L~~i~lp~------~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           72 KVTEIKIPS------TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TEEEEECCT------TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred             CceEEEeCC------CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence            466666653      344444568899999999999865 44 577789999999999888765 443555677777655


Q ss_pred             CEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCC
Q 041016          162 EFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN  241 (757)
Q Consensus       162 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  241 (757)
                      +......  ...+...+|.++++|+.+.+.++. ......+|.++.+|+.+++..+ +......+|.++..|+.+.+..+
T Consensus       143 ~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          143 EITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             EEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             ccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence            4444333  233456789999999999998764 3356678999999999999876 44456678899999999988776


Q ss_pred             cCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcc
Q 041016          242 SLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNV  321 (757)
Q Consensus       242 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~  321 (757)
                      ...  +.+......+|+.+.+... ++......+..+..++.+.+..+... .....+..+..++.+....+.+   ...
T Consensus       219 ~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~  291 (394)
T 4fs7_A          219 LYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEK  291 (394)
T ss_dssp             CCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTT
T ss_pred             ceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccc
Confidence            542  2334455678888888654 33344567788888998888776543 4455677778888777765432   234


Q ss_pred             cccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCC
Q 041016          322 SIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLS  401 (757)
Q Consensus       322 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~  401 (757)
                      .|..+..|+.+.+.++ ++.....+|.+|.+|+.+++..+                        ++..-..+|.+|.+|+
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~------------------------v~~I~~~aF~~c~~L~  346 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL------------------------VEEIGKRSFRGCTSLS  346 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT------------------------CCEECTTTTTTCTTCC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc------------------------ccEEhHHhccCCCCCC
Confidence            4455555666655443 33333445555666666555422                        2222335667778888


Q ss_pred             EEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEE
Q 041016          402 VLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVL  451 (757)
Q Consensus       402 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  451 (757)
                      .+++..+ ++.....+|.++++|+.+++..+- . .+..+|.++++|+.+
T Consensus       347 ~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          347 NINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             EEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            8888766 555556678888888888887552 2 234567777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=2.4e-14  Score=134.42  Aligned_cols=132  Identities=20%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCccccCCC-CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCC
Q 041016          105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANL-TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLK  183 (757)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  183 (757)
                      .+.++.+|++|++++|.++ .+| . +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~-~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIE-N-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCC-C-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhH-H-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            3455666677777777666 344 2 3333 3666666666666643  4566666666666666666654444445666


Q ss_pred             CCCEEEccCccCCccCch--hccCCCCCCEEEccccccccccCc----cccCCCCCCEEEccCCcC
Q 041016          184 NLKQLILDDNLIQGQIPA--EIGNLTNLHKLSLRQNKFSGGIPL----SLLQLRKLETLDLQRNSL  243 (757)
Q Consensus       184 ~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l  243 (757)
                      +|++|++++|.+. .+|.  .+..+++|++|++++|.+. .+|.    .+..+++|++|+++.|..
T Consensus        89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            6666666666664 2333  4555555666666665555 2333    244555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.50  E-value=1.6e-16  Score=152.49  Aligned_cols=155  Identities=24%  Similarity=0.300  Sum_probs=122.4

Q ss_pred             ccCCCCCCEEeCcCCcccCcchh------hccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccc
Q 041016          511 LSNLSLLQHLDLHDNNLTGEFPA------FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFG  584 (757)
Q Consensus       511 ~~~l~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~  584 (757)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            55667777888888887777665      78888999999999998886 55 7888899999999999887 4565554


Q ss_pred             cccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCC
Q 041016          585 NLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQ  664 (757)
Q Consensus       585 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  664 (757)
                      .++.                                          |+.|++++|++++ +| .+..+++|++|++++|+
T Consensus        91 ~~~~------------------------------------------L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~  126 (198)
T 1ds9_A           91 VADT------------------------------------------LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHH------------------------------------------CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEE
T ss_pred             cCCc------------------------------------------CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCc
Confidence            4443                                          4889999999986 44 68888899999999999


Q ss_pred             CCccCC-cchhCCCCCCEEeCCCCcCccCCCCC----------ccCCCCCCEEeCCCCcce
Q 041016          665 LQGNIP-STFGNLEILETLDLSHNSLSGKIPQT----------FAKLQQLTSLYLSNNKLS  714 (757)
Q Consensus       665 l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  714 (757)
                      +++..+ ..+..+++|++|++++|.+++.+|..          +..+++|++||  +|+++
T Consensus       127 i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            986543 57888999999999999998876654          77889999887  66654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=5e-14  Score=132.25  Aligned_cols=110  Identities=25%  Similarity=0.285  Sum_probs=65.9

Q ss_pred             ccCCCCCCCEEeCCCCcCCCCcCccccCCC-CCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCC
Q 041016          130 GFANLTRLTYLDLKDNNLNGSIPSQLFNLR-YLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTN  208 (757)
Q Consensus       130 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  208 (757)
                      .+.++++|++|++++|.++ .+|. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            3566777888888888777 3443 44433 777777777777654  45666666666666666666443344455666


Q ss_pred             CCEEEccccccccccCc--cccCCCCCCEEEccCCcCc
Q 041016          209 LHKLSLRQNKFSGGIPL--SLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       209 L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~  244 (757)
                      |++|++++|.+. .+|.  .+..+++|++|++++|.++
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            666666666654 3333  4555555555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=4.1e-16  Score=149.66  Aligned_cols=86  Identities=29%  Similarity=0.420  Sum_probs=34.7

Q ss_pred             cccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCC
Q 041016          154 QLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL  233 (757)
Q Consensus       154 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  233 (757)
                      .+.++++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            34444444444444444433 12 3333444444444444443 233333333444444444444442 22 23334444


Q ss_pred             CEEEccCCcCc
Q 041016          234 ETLDLQRNSLS  244 (757)
Q Consensus       234 ~~L~l~~n~l~  244 (757)
                      ++|++++|.++
T Consensus       118 ~~L~l~~N~i~  128 (198)
T 1ds9_A          118 RVLYMSNNKIT  128 (198)
T ss_dssp             SEEEESEEECC
T ss_pred             CEEECCCCcCC
Confidence            44444444433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2.7e-13  Score=126.16  Aligned_cols=90  Identities=28%  Similarity=0.350  Sum_probs=83.9

Q ss_pred             cccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeC
Q 041016          629 AIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYL  708 (757)
Q Consensus       629 ~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  708 (757)
                      +.++.|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            34588999999999988999999999999999999999888888999999999999999999988888999999999999


Q ss_pred             CCCcceecCC
Q 041016          709 SNNKLSGRIP  718 (757)
Q Consensus       709 s~N~l~g~iP  718 (757)
                      ++|++.+..+
T Consensus       110 ~~N~~~c~c~  119 (170)
T 3g39_A          110 LNNPWDCACS  119 (170)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCCCCCch
Confidence            9999987655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.41  E-value=1e-12  Score=122.70  Aligned_cols=89  Identities=29%  Similarity=0.352  Sum_probs=73.3

Q ss_pred             ccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCC
Q 041016          630 IYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLS  709 (757)
Q Consensus       630 ~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  709 (757)
                      .++.|+|++|++++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~  113 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY  113 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence            34778888888887778888888888899999998888777778888889999999998887777778888899999999


Q ss_pred             CCcceecCC
Q 041016          710 NNKLSGRIP  718 (757)
Q Consensus       710 ~N~l~g~iP  718 (757)
                      +|++....+
T Consensus       114 ~N~~~c~~~  122 (174)
T 2r9u_A          114 NNPWDCECR  122 (174)
T ss_dssp             SSCBCTTBG
T ss_pred             CCCcccccc
Confidence            998876433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=1.4e-12  Score=121.21  Aligned_cols=104  Identities=31%  Similarity=0.342  Sum_probs=55.1

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      +++++++|.++ .+| ..+  .++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        12 ~~l~~s~n~l~-~ip-~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLA-SVP-TGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCS-SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-ccC-ccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            56666666665 355 222  25566666666666655555555555555555555555554444455555555555555


Q ss_pred             ccCCccCchhccCCCCCCEEEccccccc
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~  220 (757)
                      |++++..+..|.++++|++|+|++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5555443334444444444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2.1e-12  Score=120.50  Aligned_cols=104  Identities=23%  Similarity=0.288  Sum_probs=65.7

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      +.+++++|.++ .+| ..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            45666666664 566 3332  6677777777777766666677777777777777776665555566666666666666


Q ss_pred             ccCCccCchhccCCCCCCEEEccccccc
Q 041016          193 NLIQGQIPAEIGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       193 n~l~~~~p~~~~~l~~L~~L~L~~n~l~  220 (757)
                      |++++..+..|..+++|++|+|++|.+.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6666444444666666666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.39  E-value=3.6e-11  Score=128.53  Aligned_cols=129  Identities=11%  Similarity=0.089  Sum_probs=69.3

Q ss_pred             hhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCC
Q 041016          345 LWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTS  423 (757)
Q Consensus       345 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  423 (757)
                      ..|..+..|+.+.+..+... .....|.... |+.+.+. +.+.......|.+|.+|+.+++..+ ++.+...+|.+|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            34555555555555433221 2222333333 4444443 2222233345667777888877654 44455567777888


Q ss_pred             ccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCC
Q 041016          424 VMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSN  479 (757)
Q Consensus       424 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n  479 (757)
                      |+.+.+..+ ++.....+|.+|.+|+.+++.++....  ..+..+..|+.+.+..+
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence            888888654 554556678888888888887765432  24556666666666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.34  E-value=1.6e-10  Score=123.45  Aligned_cols=131  Identities=12%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             cccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCC-CCCCCCcccEEECcCCccccCCCchhhhccc
Q 041016          416 ETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTIL  494 (757)
Q Consensus       416 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  494 (757)
                      .+|..+..|+.+.+..+... ....+|.++.+|+.+.+... +..... +|.+|.+|+.+++..+               
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~---------------  321 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG---------------  321 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT---------------
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc---------------
Confidence            34555555555555443322 33444555556666555422 221111 4555555555555322               


Q ss_pred             EEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCc
Q 041016          495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNN  574 (757)
Q Consensus       495 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~  574 (757)
                              ++.+...+|.+|++|+.+.|..+ ++.+-..+|.+|.+|+.+++.++...   ...+..+..|+.+.+..+.
T Consensus       322 --------v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          322 --------ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             --------CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred             --------ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence                    22233456777777777777544 55455667777777777777776543   2456666777777766554


Q ss_pred             c
Q 041016          575 L  575 (757)
Q Consensus       575 l  575 (757)
                      +
T Consensus       390 ~  390 (394)
T 4gt6_A          390 I  390 (394)
T ss_dssp             -
T ss_pred             E
Confidence            3

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=2.5e-13  Score=143.11  Aligned_cols=63  Identities=21%  Similarity=0.105  Sum_probs=29.4

Q ss_pred             CCCCEEeCCCCCCCCCCCcccc----C-CCCCCCEEeCCCCcCCCCcCcccc-CCCCCCEEEccCCcCCC
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGF----A-NLTRLTYLDLKDNNLNGSIPSQLF-NLRYLEFLDLSANAIEG  173 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~----~-~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~  173 (757)
                      ++|++|+|++|.++.... ..+    . ..++|++|+|++|.++......+. .+++|++|+|++|.++.
T Consensus        72 ~~L~~L~Ls~n~l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~  140 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKC-TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGP  140 (372)
T ss_dssp             TTCCEEECTTSCCCHHHH-HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCH
T ss_pred             hhCCEEEecCCCCCHHHH-HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCH
Confidence            456666666666653211 111    1 224566666666655433222222 23445555555555543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=2.2e-13  Score=143.55  Aligned_cols=183  Identities=17%  Similarity=0.196  Sum_probs=126.4

Q ss_pred             CCCCCEEeCCCCcCCCCcCccccC-----CCCCCEEEccCCcCCCcccccc-cCCCCCCEEEccCccCCccCchhc----
Q 041016          134 LTRLTYLDLKDNNLNGSIPSQLFN-----LRYLEFLDLSANAIEGKLSSRV-AGLKNLKQLILDDNLIQGQIPAEI----  203 (757)
Q Consensus       134 l~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~~----  203 (757)
                      +++|++|+|++|.++......+..     .++|++|+|++|.+.......+ ..+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467889999999887544444332     3689999999998875433333 346688999999998875544444    


Q ss_pred             -cCCCCCCEEEccccccccc----cCccccCCCCCCEEEccCCcCccc----CcccccCCCCCCEEEccCCCCCCc----
Q 041016          204 -GNLTNLHKLSLRQNKFSGG----IPLSLLQLRKLETLDLQRNSLSGE----IPEDIGTLANITILALSNNALTGA----  270 (757)
Q Consensus       204 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----  270 (757)
                       ...++|++|+|++|.++..    ++..+..+++|++|++++|.++..    ++..+...++|++|+|++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3467899999999988642    344556788899999999988753    245567778899999999988753    


Q ss_pred             cchhhhcCCCCCEEEccCCccccccchhhhccCC-----CcEEE--ccCCCCc
Q 041016          271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG-----MKSLY--LGGNKLK  316 (757)
Q Consensus       271 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-----L~~L~--L~~n~l~  316 (757)
                      ++..+...++|++|++++|.++......+..+..     |+.+.  +..+.+.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            3345556788999999999988665555554322     55555  5555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=5.9e-11  Score=124.63  Aligned_cols=104  Identities=25%  Similarity=0.248  Sum_probs=64.0

Q ss_pred             EEEccCC-cCccccCcccCCCCCCCEEECcC-CcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCc
Q 041016          543 VLNLRNT-ALEGSITDGLSNLTSLQILDLSN-NNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSK  620 (757)
Q Consensus       543 ~L~Ls~n-~l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  620 (757)
                      .++++++ .+++ +|. +..+++|++|+|++ |.+.+..+..|.++.+|                               
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L-------------------------------   58 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL-------------------------------   58 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-------------------------------
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-------------------------------
Confidence            4566666 5653 555 66677777777764 66665555555544433                               


Q ss_pred             cccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCcc
Q 041016          621 RGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG  691 (757)
Q Consensus       621 ~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  691 (757)
                                 +.|+|++|+|++..|..|.++++|++|+|++|+|++.++..|..++ |+.|+|++|.+..
T Consensus        59 -----------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           59 -----------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             -----------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             -----------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence                       6666666666666666666666666666666666655555555554 6666666666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=1.2e-10  Score=122.13  Aligned_cols=89  Identities=20%  Similarity=0.169  Sum_probs=38.7

Q ss_pred             ccCCCCCCEEEccC-CcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCC
Q 041016          155 LFNLRYLEFLDLSA-NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL  233 (757)
Q Consensus       155 l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  233 (757)
                      +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..+..++ |
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence            44444444444442 444444444444444444444444444444444444444444444444444433333333332 4


Q ss_pred             CEEEccCCcCc
Q 041016          234 ETLDLQRNSLS  244 (757)
Q Consensus       234 ~~L~l~~n~l~  244 (757)
                      ++|++.+|.+.
T Consensus       106 ~~l~l~~N~~~  116 (347)
T 2ifg_A          106 QELVLSGNPLH  116 (347)
T ss_dssp             CEEECCSSCCC
T ss_pred             eEEEeeCCCcc
Confidence            44444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.05  E-value=1.8e-08  Score=107.00  Aligned_cols=300  Identities=9%  Similarity=0.059  Sum_probs=136.3

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      .+|+.+.+.. .++ .|+..+|.+|.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +..+...+|... +|+.+.
T Consensus        46 ~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~  119 (379)
T 4h09_A           46 DRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE  119 (379)
T ss_dssp             GGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred             cCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence            3444444432 222 344455666666666666543 443333445444 4555554432 333333444443 566666


Q ss_pred             ccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCccc------------CcccccCCCCC
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGE------------IPEDIGTLANI  257 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~------------~~~~l~~l~~L  257 (757)
                      +..+- ......+|.++ +|+.+.+..+ ++.....+|..+..++.+.+..+.....            ....+.....+
T Consensus       120 lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
T 4h09_A          120 FPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG  196 (379)
T ss_dssp             CCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred             CCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence            55432 21223334333 3444444332 2223334455555565555544322110            11112223333


Q ss_pred             CEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCc
Q 041016          258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSC  337 (757)
Q Consensus       258 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~  337 (757)
                      ..+.+....- ......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ ++.++..                
T Consensus       197 ~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~----------------  257 (379)
T 4h09_A          197 TEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF----------------  257 (379)
T ss_dssp             SEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT----------------
T ss_pred             ccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc----------------
Confidence            3333322211 122233444445555544332 22222333444455555554433 3333333                


Q ss_pred             cCccCcchhccCCCCCCEEEccCCcccCcccccccCcc-ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCc
Q 041016          338 SVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELN-LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPE  416 (757)
Q Consensus       338 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~  416 (757)
                              +|.++.+|+.+.+..+ +.......|..+. |+.+.+.++.++..-...|.+|.+|+.+.+..+ ++.+-..
T Consensus       258 --------aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  327 (379)
T 4h09_A          258 --------LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVY  327 (379)
T ss_dssp             --------TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             --------ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence                    3444444444444322 2222223334433 555555444444344456677778888887644 5545556


Q ss_pred             ccCCCCCccEEEccCCcccccChHhhhccCCC
Q 041016          417 TIGQSTSVMVLMLSSNNFSGHVPKSISNIYRL  448 (757)
Q Consensus       417 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L  448 (757)
                      +|.++++|+.+.+..+ ++..-..+|.++..+
T Consensus       328 aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          328 AFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             TTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             HhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            7778888888887654 444555667666433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.03  E-value=3.6e-08  Score=104.58  Aligned_cols=146  Identities=14%  Similarity=0.095  Sum_probs=83.1

Q ss_pred             hhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccc
Q 041016          509 QNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQG  588 (757)
Q Consensus       509 ~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~  588 (757)
                      ..+..+..|+.+.+..+ +......++.++..|+.+.+..+ ++.....+|.++.+|+.+++..+ +.......|.++.+
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~  287 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence            34455555666555443 22233445555666666666544 34344455666666666666433 32222233333333


Q ss_pred             cccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCcc
Q 041016          589 MIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGN  668 (757)
Q Consensus       589 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  668 (757)
                      |                                          +.+++.++.++......|.++++|+.++|..+ ++..
T Consensus       288 L------------------------------------------~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I  324 (379)
T 4h09_A          288 L------------------------------------------TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI  324 (379)
T ss_dssp             C------------------------------------------CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred             c------------------------------------------ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE
Confidence            3                                          55666666665455566777777888777654 5545


Q ss_pred             CCcchhCCCCCCEEeCCCCcCccCCCCCccCCC
Q 041016          669 IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQ  701 (757)
Q Consensus       669 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  701 (757)
                      ...+|.++++|+++.+..+ ++.+...+|.+.+
T Consensus       325 ~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          325 QVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             HHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            5567888888888877654 5555566676654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=2e-09  Score=112.26  Aligned_cols=157  Identities=17%  Similarity=0.162  Sum_probs=76.5

Q ss_pred             cccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhcc--CCCCCCEEEccc--cccccc-----cC
Q 041016          154 QLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIG--NLTNLHKLSLRQ--NKFSGG-----IP  224 (757)
Q Consensus       154 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~--n~l~~~-----~~  224 (757)
                      .+..+++|+.|+|++|.-. ..+. +. +++|++|++..+.+.......+.  .+++|++|+|+.  +...+.     +.
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            3344555555555554211 1111 22 45566666655554432222232  456666666542  111110     01


Q ss_pred             ccc--cCCCCCCEEEccCCcCcccCccccc---CCCCCCEEEccCCCCCCcc----chhhhcCCCCCEEEccCCcccccc
Q 041016          225 LSL--LQLRKLETLDLQRNSLSGEIPEDIG---TLANITILALSNNALTGAI----PQSIRNMTKLVTLRLDSNVLSGEI  295 (757)
Q Consensus       225 ~~l--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~  295 (757)
                      ..+  ..+++|++|++.+|.+....+..+.   .+++|++|+|+.|.+.+..    +..+..+++|+.|++++|.++...
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~  323 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM  323 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence            111  2356777777776666543322222   3566777777777666532    233345567777777777666444


Q ss_pred             chhhhccCCCcEEEccCCC
Q 041016          296 STWLFDLQGMKSLYLGGNK  314 (757)
Q Consensus       296 ~~~l~~l~~L~~L~L~~n~  314 (757)
                      ...+...- ...++++.++
T Consensus       324 ~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          324 KKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHC-CSEEECCSBC
T ss_pred             HHHHHHHc-CCEEEecCCc
Confidence            43343311 2346666655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=1.2e-08  Score=106.36  Aligned_cols=139  Identities=17%  Similarity=0.189  Sum_probs=83.0

Q ss_pred             ccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccccccCcccc--CCCCCCEEEccC--CcCccc----
Q 041016          175 LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLL--QLRKLETLDLQR--NSLSGE----  246 (757)
Q Consensus       175 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l~~~----  246 (757)
                      +...+..+++|+.|.+++|.-. .++. +. +++|++|++..|.+.......+.  .+++|++|+|+.  +...+.    
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            3455677888888888877311 2232 33 77888888888777544333343  678888888753  111111    


Q ss_pred             -Ccccc--cCCCCCCEEEccCCCCCCccchhhh---cCCCCCEEEccCCcccccc----chhhhccCCCcEEEccCCCCc
Q 041016          247 -IPEDI--GTLANITILALSNNALTGAIPQSIR---NMTKLVTLRLDSNVLSGEI----STWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       247 -~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~  316 (757)
                       +...+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+..    +..+..+++|+.|+++.|.++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             11122  2467777777777777644433333   3567777777777766532    223345667777777766655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.74  E-value=5.8e-11  Score=117.12  Aligned_cols=65  Identities=31%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             cCCCCCCEEEccCCcCCCc--ccccccCCCCCCEEEccCccCCccCchhccCCC--CCCEEEccccccccc
Q 041016          156 FNLRYLEFLDLSANAIEGK--LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLT--NLHKLSLRQNKFSGG  222 (757)
Q Consensus       156 ~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~  222 (757)
                      .++++|++|+|++|++++.  ++..+..+++|+.|+|++|.+++.  ..+..+.  +|++|+|++|.+.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT  235 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence            3455666666666666552  234444555555555555555533  2222222  555555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.49  E-value=3.9e-08  Score=92.34  Aligned_cols=45  Identities=13%  Similarity=0.117  Sum_probs=22.4

Q ss_pred             chhccCCCCCCEEeCcCC-cccCc----chhhccCCCCCCEEEccCCcCc
Q 041016          508 PQNLSNLSLLQHLDLHDN-NLTGE----FPAFLSQLSSLQVLNLRNTALE  552 (757)
Q Consensus       508 ~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~  552 (757)
                      ...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~   78 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN   78 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            344555566666666666 55432    2223334445555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=3.2e-08  Score=92.88  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=50.0

Q ss_pred             eccccccCCCCCCEEeCCCC-CCCCC----CCccccCCCCCCCEEeCCCCcCCCC----cCccccCCCCCCEEEccCCcC
Q 041016          101 VVLAPIFRIRSLMTLDLSYN-SMQGE----VPGTGFANLTRLTYLDLKDNNLNGS----IPSQLFNLRYLEFLDLSANAI  171 (757)
Q Consensus       101 ~~~~~l~~l~~L~~L~Ls~n-~l~~~----i~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l  171 (757)
                      .+...+...+.|++|+|++| .+...    +. ..+...++|++|+|++|.+...    +...+...+.|++|+|++|.+
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            34445566777777777777 66532    22 3455566677777777766532    223333445566666666655


Q ss_pred             CCc----ccccccCCCCCCEEEc--cCccCC
Q 041016          172 EGK----LSSRVAGLKNLKQLIL--DDNLIQ  196 (757)
Q Consensus       172 ~~~----~~~~~~~l~~L~~L~L--~~n~l~  196 (757)
                      ...    +...+...+.|++|+|  ++|.+.
T Consensus       106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          106 SGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            532    1223333444444444  444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=6.6e-07  Score=88.12  Aligned_cols=78  Identities=29%  Similarity=0.351  Sum_probs=38.5

Q ss_pred             ccccCeEECcCCCCCC--cCCccccCCCCCCEEeCCCCCCCccCCcchhCCC--CCCEEeCCCCcCccCCCC-------C
Q 041016          628 LAIYSLMDLSNNQLSG--EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLE--ILETLDLSHNSLSGKIPQ-------T  696 (757)
Q Consensus       628 ~~~l~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-------~  696 (757)
                      ++.|+.|+|++|+|++  .+|..+..+++|+.|+|++|++++.  +.+..+.  +|++|+|++|.+.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3445555555555554  2334445555555555555555543  2233333  555555555555544432       2


Q ss_pred             ccCCCCCCEEe
Q 041016          697 FAKLQQLTSLY  707 (757)
Q Consensus       697 l~~l~~L~~L~  707 (757)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            34455555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=3.1e-06  Score=77.06  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=37.9

Q ss_pred             CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCc-CCCcccccccCC----CCCCEEEccCcc-CCccCchhccCCCCC
Q 041016          136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANA-IEGKLSSRVAGL----KNLKQLILDDNL-IQGQIPAEIGNLTNL  209 (757)
Q Consensus       136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~L  209 (757)
                      +|++||++++.++..--..+.++++|++|+|++|. ++...-..++.+    ++|++|++++|. ++...-..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555554433444555555555555553 333222223332    234555555443 443333334445555


Q ss_pred             CEEEcccc
Q 041016          210 HKLSLRQN  217 (757)
Q Consensus       210 ~~L~L~~n  217 (757)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=3.6e-06  Score=76.66  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=42.9

Q ss_pred             CCCCEEEccCCcCCCcccccccCCCCCCEEEccCcc-CCccCchhccCC----CCCCEEEccccc-cccccCccccCCCC
Q 041016          159 RYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL-IQGQIPAEIGNL----TNLHKLSLRQNK-FSGGIPLSLLQLRK  232 (757)
Q Consensus       159 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~  232 (757)
                      .+|+.||++++.++...-..+.++++|++|+|++|. +++..-..++.+    ++|++|+|++|. ++...-..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            467777777777665544455566666666666663 443333334432    245555555553 43332233344444


Q ss_pred             CCEEEccCC
Q 041016          233 LETLDLQRN  241 (757)
Q Consensus       233 L~~L~l~~n  241 (757)
                      |++|+++++
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.33  E-value=0.0001  Score=68.40  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=31.1

Q ss_pred             hccCCCCCCEEeCcCC-cccCc----chhhccCCCCCCEEEccCCcCcccc----CcccCCCCCCCEEECcCCccc
Q 041016          510 NLSNLSLLQHLDLHDN-NLTGE----FPAFLSQLSSLQVLNLRNTALEGSI----TDGLSNLTSLQILDLSNNNLL  576 (757)
Q Consensus       510 ~~~~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~ls~n~l~  576 (757)
                      .+.+-+.|++|+|++| .|.+.    +..++..-+.|+.|+|++|.+....    .+.+..-+.|++|+|++|.|.
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            3344556666666654 44421    2333444455555555555554221    122333344555555554443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.07  E-value=0.00097  Score=57.75  Aligned_cols=57  Identities=25%  Similarity=0.342  Sum_probs=37.6

Q ss_pred             CeEECcCCCCC-CcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCc
Q 041016          632 SLMDLSNNQLS-GEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS  690 (757)
Q Consensus       632 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  690 (757)
                      ..++.++++++ ..+|..+.  .+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46777777775 34554332  25677777777777666666777777777777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.89  E-value=0.00089  Score=62.07  Aligned_cols=41  Identities=17%  Similarity=0.257  Sum_probs=20.5

Q ss_pred             cCCCCCCEEEccCc-cCCcc----CchhccCCCCCCEEEccccccc
Q 041016          180 AGLKNLKQLILDDN-LIQGQ----IPAEIGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       180 ~~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~  220 (757)
                      .+-+.|+.|+|++| .+...    +.+++..-+.|++|+|++|.+.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            44455666666654 44321    2233444455555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.83  E-value=0.0022  Score=55.44  Aligned_cols=57  Identities=21%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             CEEeCCCCCCC-ccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcce
Q 041016          656 KSLNLSYNQLQ-GNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS  714 (757)
Q Consensus       656 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  714 (757)
                      ..++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.++.|..+++|++|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47899999997 35665443  57999999999999888888999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	757
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-25
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-14
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-12
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-10
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	6e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  106 bits (264), Expect = 3e-25
 Identities = 82/384 (21%), Positives = 153/384 (39%), Gaps = 35/384 (9%)

Query: 205 NLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN 264
            L    K  L +   +  +  +   L ++ TL   R  +     + +  L N+T +  SN
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKW------- 317
           N LT   P  ++N+TKLV + +++N ++              +L+               
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 318 --------NDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ 369
                   N    I     LT L   S   + +    L+  T L  LD+S N+       
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV 192

Query: 370 WLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLML 429
                NL ++I ++N ++   P  +    NL  L L+ N        T+   T++  L L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 430 SSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSF 489
           ++N  S   P  +S + +L  L L  N  S         + + +++++ N+     P S 
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLEDISPISN 305

Query: 490 GVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNT 549
              +  L+L  N  S   P  +S+L+ LQ L   +N ++    + L+ L+++  L+  + 
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 550 ALEGSITDGLSNLTSLQILDLSNN 573
            +       L+NLT +  L L++ 
Sbjct: 362 QISDLT--PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 93.1 bits (230), Expect = 7e-21
 Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 12/201 (5%)

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS 571
           + L+ L+ L   +N ++   P  +   ++L  L+L    L+      L++LT+L  LDL+
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 572 NNNLLGKIP-SSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAI 630
           NN +    P S    L  +    + +  +  +      + +L +N    +      +L  
Sbjct: 250 NNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT-ALTNLELNENQLEDISPISNLKN 308

Query: 631 YSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLS 690
            + + L  N +S   P  + SL  L+ L  + N++     S+  NL  +  L   HN +S
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 691 GKIPQTFAKLQQLTSLYLSNN 711
              P   A L ++T L L++ 
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 3e-15
 Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 15/187 (8%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           + P+  + +L  L L+ N ++        A+LT LT LDL +N ++   P  L  L  L 
Sbjct: 212 ITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 266

Query: 163 FLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGG 222
            L L AN I     S +AGL  L  L L++N  Q +  + I NL NL  L+L  N  S  
Sbjct: 267 ELKLGANQISN--ISPLAGLTALTNLELNEN--QLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 223 IPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLV 282
            P+S   L KL+ L    N +S      +  L NI  L+  +N ++   P  + N+T++ 
Sbjct: 323 SPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRIT 376

Query: 283 TLRLDSN 289
            L L+  
Sbjct: 377 QLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.3 bits (176), Expect = 4e-14
 Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 17/201 (8%)

Query: 113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIE 172
            +L  + N +    P     NL     L L  N L       L +L  L  LDL+ N I 
Sbjct: 200 ESLIATNNQISDITPLGILTNLD---ELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 173 GKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRK 232
                 ++GL  L +L L  N I    P  +  LT L  L L +N+     P+S   L+ 
Sbjct: 255 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKN 308

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
           L  L L  N++S   P  + +L  +  L  +NN ++     S+ N+T +  L    N +S
Sbjct: 309 LTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQIS 364

Query: 293 GEISTWLFDLQGMKSLYLGGN 313
                 L +L  +  L L   
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.0 bits (175), Expect = 7e-14
 Identities = 72/361 (19%), Positives = 124/361 (34%), Gaps = 33/361 (9%)

Query: 109 IRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSA 168
           +  + TL      ++      G   L  LT ++  +N L    P  L NL  L  + ++ 
Sbjct: 43  LDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNN 97

Query: 169 NAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPA------------EIGNLTNLHKLSLRQ 216
           N I                L  +       +               I +++ L  L+  Q
Sbjct: 98  NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 217 NKFSGGIPLSLLQLRKLETLDLQRNSLS-GEIPEDIGTLANITILALSNNALTGAIPQSI 275
               G     L  L  L TL+    S +       +  L N+  L  +NN ++   P   
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL-- 215

Query: 276 RNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLR 335
             +T L  L L+ N L       L  L  +  L L  N++  ++   +     LTEL L 
Sbjct: 216 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI--SNLAPLSGLTKLTELKLG 271

Query: 336 SCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLF 395
           +  +    PL   T      L+ ++ E         +  NL  + L  N ++     P+ 
Sbjct: 272 ANQISNISPLAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNISD--ISPVS 326

Query: 396 ESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN 455
               L  L  + N  S     ++   T++  L    N  S   P  ++N+ R+  L L++
Sbjct: 327 SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 456 N 456
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.5 bits (166), Expect = 8e-13
 Identities = 83/441 (18%), Positives = 145/441 (32%), Gaps = 78/441 (17%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
              M   L   ++   V      +L ++T L      +                      
Sbjct: 22  AEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGI---------------------K 57

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ 229
           +I+G     V  L NL Q+   +N +    P  + NLT L  + +  N+ +   PL+ L 
Sbjct: 58  SIDG-----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT 110

Query: 230 LRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289
                TL   + +    +                +N +       I  ++ L +L+  S 
Sbjct: 111 NLTGLTLFNNQITDIDPLKNLTNLNRLELS----SNTI-----SDISALSGLTSLQQLSF 161

Query: 290 VLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLST 349
                    L +L  ++ L +  NK+     ++ +       L   +  +    PL + T
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE--SLIATNNQISDITPLGILT 219

Query: 350 QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNN 409
              L  L L+ N+L+       S  NL  + L++N ++     PL     L+ L L  N 
Sbjct: 220 N--LDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQ 274

Query: 410 FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDS 469
            S   P     + + +      N         ISN+  L  L L  N+ S   P      
Sbjct: 275 ISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK 330

Query: 470 LVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG 529
           L                         L  + NK S     +L+NL+ +  L    N ++ 
Sbjct: 331 LQ-----------------------RLFFANNKVSD--VSSLANLTNINWLSAGHNQISD 365

Query: 530 EFPAFLSQLSSLQVLNLRNTA 550
             P  L+ L+ +  L L + A
Sbjct: 366 LTP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 4e-10
 Identities = 58/350 (16%), Positives = 109/350 (31%), Gaps = 42/350 (12%)

Query: 403 LVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEF 462
            VL + N +  + +T      V  L              +  +  L  ++ SNN  +   
Sbjct: 27  TVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT 82

Query: 463 PAFGSDSLV-------------GHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQ 509
           P      LV                ++++        +       + +L+          
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNL-RNTALEGSITDGLSNLTSLQIL 568
            +S++S L  L        G     L  L++L  L     ++ + S    L+ LT+L+ L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 569 DLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSL 628
             +NN +    P         +             +    + DL +             L
Sbjct: 203 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 262

Query: 629 AIYSLMDLSNNQLSGEIPSSLGS--------------------LKGLKSLNLSYNQLQGN 668
              + + L  NQ+S   P +  +                    LK L  L L +N +   
Sbjct: 263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 669 IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP 718
            P    +L  L+ L  ++N +S     + A L  +  L   +N++S   P
Sbjct: 323 SP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 46/246 (18%), Positives = 82/246 (33%), Gaps = 29/246 (11%)

Query: 494 LMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG 553
           +   L +   +  + Q  ++L  +  L      +       +  L++L  +N  N  L  
Sbjct: 25  MKTVLGKTNVTDTVSQ--TDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD 80

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI 613
                L NLT L  + ++NN +    P +       +   +   T  +       +  L 
Sbjct: 81  IT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 614 VNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSL-------------------GSLKG 654
           ++        +   L     +   N     +  ++L                     L  
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 655 LKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLS 714
           L+SL  + NQ+    P        L+ L L+ N L      T A L  LT L L+NN++S
Sbjct: 199 LESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 715 GRIPES 720
              P S
Sbjct: 255 NLAPLS 260

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.2 bits (103), Expect = 4e-05
 Identities = 43/243 (17%), Positives = 80/243 (32%), Gaps = 28/243 (11%)

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS 571
           + L+      L   N+T       + L  +  L      ++ SI DG+  L +L  ++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFS 74

Query: 572 NNNLLGKIP-SSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAI 630
           NN L    P  +   L  ++   + +  +  + +        + N + +          +
Sbjct: 75  NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 631 YSLMDLSNN------------------QLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPST 672
             L   SN                            L +L  L+ L++S N++       
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-- 192

Query: 673 FGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIY 732
              L  LE+L  ++N +S   P        L  L L+ N+L   I     +    D  + 
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD-IGTLASLTNLTDLDLA 249

Query: 733 ANN 735
            N 
Sbjct: 250 NNQ 252

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.8 bits (216), Expect = 2e-19
 Identities = 58/316 (18%), Positives = 105/316 (33%), Gaps = 24/316 (7%)

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
           L  +      L  ++P+D+    +  +L L NN +T       +N+  L TL L +N +S
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 293 GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTE 352
                    L  ++ LYL  N+LK            L         VR S+   L+    
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 353 LTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG 412
           +                +     L  + ++D  +T ++P  L    +L+ L L  N  + 
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITK 185

Query: 413 ELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVG 472
               ++    ++  L LS N+ S     S++N   L  L L+NN              + 
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEF- 531
            V + +N  S    + F                  P   +  +    + L  N +     
Sbjct: 246 VVYLHNNNISAIGSNDF----------------CPPGYNTKKASYSGVSLFSNPVQYWEI 289

Query: 532 -PAFLSQLSSLQVLNL 546
            P+    +     + L
Sbjct: 290 QPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (190), Expect = 3e-16
 Identities = 48/245 (19%), Positives = 88/245 (35%), Gaps = 4/245 (1%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFP 532
            V  S      +VP        +L L  NK +     +  NL  L  L L +N ++   P
Sbjct: 14  VVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 72

Query: 533 AFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDT 592
              + L  L+ L L    L+         L  L++ +     +   + +    +  +   
Sbjct: 73  GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 132

Query: 593 PSILPTLPEIFSFPVEIQDLIVNW--KNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLG 650
            + L +          ++ L        +   +        + + L  N+++    +SL 
Sbjct: 133 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK 192

Query: 651 SLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN 710
            L  L  L LS+N +      +  N   L  L L++N L  K+P   A  + +  +YL N
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 251

Query: 711 NKLSG 715
           N +S 
Sbjct: 252 NNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (190), Expect = 3e-16
 Identities = 52/261 (19%), Positives = 101/261 (38%), Gaps = 12/261 (4%)

Query: 110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN 169
                LDL  N +     G  F NL  L  L L +N ++   P     L  LE L LS N
Sbjct: 31  PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 170 AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQ 229
            ++         L+ L+    +   ++  +   +  +  +  L     K SG    +   
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQG 148

Query: 230 LRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSN 289
           ++KL  + +   +++  IP+  G   ++T L L  N +T     S++ +  L  L L  N
Sbjct: 149 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205

Query: 290 VLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRG------SI 343
            +S   +  L +   ++ L+L  NKL       +     +  + L + ++          
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 344 PLWLSTQTELTFLDLSENELE 364
           P + + +   + + L  N ++
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.4 bits (189), Expect = 4e-16
 Identities = 48/232 (20%), Positives = 87/232 (37%), Gaps = 4/232 (1%)

Query: 506 QLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSL 565
           ++P++L        LDL +N +T         L +L  L L N  +        + L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 566 QILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSS 625
           + L LS N L          LQ +    + +  + +     +    ++    N  +    
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 626 KSLAIYSLMDLSNNQLSGEIPSSL--GSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLD 683
           ++ A   +  LS  +++    +++  G    L  L+L  N++     ++   L  L  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 684 LSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANN 735
           LS NS+S     + A    L  L+L+NNKL                 ++ NN
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 56/327 (17%), Positives = 108/327 (33%), Gaps = 47/327 (14%)

Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI 257
           ++P ++    +   L L+ NK +         L+ L TL L  N +S   P     L  +
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKW 317
             L LS N L     +  + + +L     +   +   +   L                  
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL------------------ 123

Query: 318 NDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLG 377
                   + ++ EL        G          +L+++ +++  +           +L 
Sbjct: 124 -------NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP--SLT 174

Query: 378 TVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGH 437
            + L  N +T      L    NL+ L LS N+ S     ++  +  +  L L++N     
Sbjct: 175 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 233

Query: 438 VPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLS 497
           VP  +++   + V+ L NN+ S                I SN F     ++   +   +S
Sbjct: 234 VPGGLADHKYIQVVYLHNNNISA---------------IGSNDFCPPGYNTKKASYSGVS 278

Query: 498 LSENKFSGQ--LPQNLSNLSLLQHLDL 522
           L  N        P     + +   + L
Sbjct: 279 LFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 45/219 (20%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRN---TALEGSITDGLSNLTSLQILDLSNN 573
           L+ +   D  L  + P  L       +L+L+N   T ++      L NL +   L L NN
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHT---LILINN 65

Query: 574 NLLGKIPSSFGN---LQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAI 630
            +    P +F     L+ +  + + L  LPE     ++   +  N     R      L  
Sbjct: 66  KISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 631 YSLMDLSNNQL--SGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNS 688
             +++L  N L  SG    +   +K L  + ++   +         +   L  L L  N 
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNK 182

Query: 689 LSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQI 727
           ++     +   L  L  L LS N +S     S      +
Sbjct: 183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 221

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.7 bits (125), Expect = 6e-08
 Identities = 25/102 (24%), Positives = 38/102 (37%)

Query: 635 DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIP 694
           DL NN+++        +LK L +L L  N++    P  F  L  LE L LS N L     
Sbjct: 37  DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 96

Query: 695 QTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNS 736
           +    LQ+L        K+   +         ++       S
Sbjct: 97  KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.4 bits (207), Expect = 2e-18
 Identities = 55/265 (20%), Positives = 93/265 (35%), Gaps = 12/265 (4%)

Query: 441 SISNIYRLLVLDLSNNSFSGEFP---AFGSDSLVGHVDISSNRFSGEVPSSFGVTILML- 496
           + +  YR+  LDLS  +    +P   +  +   +  + I                +  L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 497 --SLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGS 554
              ++    SG +P  LS +  L  LD   N L+G  P  +S L +L  +      + G+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 555 ITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDT-----PSILPTLPEIFSFPVEI 609
           I D   + + L      + N L            +                   S     
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 610 QDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNI 669
           +  +     +            + +DL NN++ G +P  L  LK L SLN+S+N L G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 670 PSTFGNLEILETLDLSHNSLSGKIP 694
           P   GNL+  +    ++N      P
Sbjct: 285 PQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.0 bits (206), Expect = 3e-18
 Identities = 82/373 (21%), Positives = 128/373 (34%), Gaps = 69/373 (18%)

Query: 25  CPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCR--WEMVRCRSRGPSQE 82
           C    K ALL+ K     DL + ++       L +W  ++DCC   W  V C +   +  
Sbjct: 3   CNPQDKQALLQIKK----DLGNPTT-------LSSWLPTTDCCNRTWLGVLCDTDTQTYR 51

Query: 83  VTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDL 142
           V                               LDLS  ++    P               
Sbjct: 52  VNN-----------------------------LDLSGLNLPKPYP--------------- 67

Query: 143 KDNNLNGSIPSQLFNLRYLEFLDLSANA-IEGKLSSRVAGLKNLKQLILDDNLIQGQIPA 201
                   IPS L NL YL FL +     + G +   +A L  L  L +    + G IP 
Sbjct: 68  --------IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119

Query: 202 EIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN-ITIL 260
            +  +  L  L    N  SG +P S+  L  L  +    N +SG IP+  G+ +   T +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 261 ALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDN 320
            +S N LTG IP +  N+         + +       +  D    K      +       
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239

Query: 321 VSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVI 380
           V +       +L   +  + G++P  L+    L  L++S N L G  PQ  +        
Sbjct: 240 VGLSKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297

Query: 381 LSDNMLTGSLPPP 393
            ++N      P P
Sbjct: 298 YANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.9 bits (177), Expect = 1e-14
 Identities = 66/263 (25%), Positives = 99/263 (37%), Gaps = 31/263 (11%)

Query: 348 STQTELTFLDLSENELEGTY--PQWLSEL-NLGTVILSDNM-LTGSLPPPLFESRNLSVL 403
           +    +  LDLS   L   Y  P  L+ L  L  + +     L G +PP + +   L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 404 VLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFP 463
            ++  N SG +P+ + Q  +++ L  S N  SG +P SIS++  L+ +    N  SG  P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 464 A--FGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSL----------------------- 498
                   L   + IS NR +G++P +F    L                           
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 499 -SENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD 557
                        +     L  LDL +N + G  P  L+QL  L  LN+    L G I  
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 558 GLSNLTSLQILDLSNNNLLGKIP 580
              NL    +   +NN  L   P
Sbjct: 287 -GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.1 bits (175), Expect = 3e-14
 Identities = 52/261 (19%), Positives = 95/261 (36%), Gaps = 3/261 (1%)

Query: 229 QLRKLETLDLQRNSLSG--EIPEDIGTLANITILALSNNA-LTGAIPQSIRNMTKLVTLR 285
           Q  ++  LDL   +L     IP  +  L  +  L +     L G IP +I  +T+L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 286 LDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL 345
           +    +SG I  +L  ++ + +L    N L      SI     L  ++     + G+IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 346 WLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVL 405
              + ++L                          +     +       LF S   +  + 
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 406 SRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAF 465
              N        +G S ++  L L +N   G +P+ ++ +  L  L++S N+  GE P  
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 466 GSDSLVGHVDISSNRFSGEVP 486
           G+         ++N+     P
Sbjct: 288 GNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.7 bits (174), Expect = 4e-14
 Identities = 67/263 (25%), Positives = 109/263 (41%), Gaps = 9/263 (3%)

Query: 486 PSSFGVTILMLSLSENKFSG--QLPQNLSNLSLLQHLDLHDN-NLTGEFPAFLSQLSSLQ 542
             +    +  L LS         +P +L+NL  L  L +    NL G  P  +++L+ L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 543 VLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTP----SILPT 598
            L + +T + G+I D LS + +L  LD S N L G +P S  +L  ++        I   
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 599 LPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLM-DLSNNQLSGEIPSSLGSLKGLKS 657
           +P+ +    ++   +   +N   G    + A  +L     +  +     S L        
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 658 LNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRI 717
                           G  + L  LDL +N + G +PQ   +L+ L SL +S N L G I
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

Query: 718 PESPQMDRQIDPVIYANNSGLCG 740
           P+   + ++ D   YANN  LCG
Sbjct: 285 PQGGNL-QRFDVSAYANNKCLCG 306

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.9 bits (164), Expect = 7e-13
 Identities = 66/263 (25%), Positives = 96/263 (36%), Gaps = 4/263 (1%)

Query: 204 GNLTNLHKLSLRQNKFSGG--IPLSLLQLRKLETLDLQRN-SLSGEIPEDIGTLANITIL 260
                ++ L L          IP SL  L  L  L +    +L G IP  I  L  +  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 261 ALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDN 320
            +++  ++GAIP  +  +  LVTL    N LSG +   +  L  +  +   GN++     
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 321 VSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVI 380
            S      L      S +              L F+DLS N LEG              I
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 381 LSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPK 440
                        +  S+NL+ L L  N   G LP+ + Q   +  L +S NN  G +P 
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP- 285

Query: 441 SISNIYRLLVLDLSNNSFSGEFP 463
              N+ R  V   +NN      P
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP 308

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (200), Expect = 1e-17
 Identities = 48/273 (17%), Positives = 91/273 (33%), Gaps = 6/273 (2%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKL-VTLRLDSNVLSG 293
           T    +  L   +P  I        + L  N ++     S R    L +     + +   
Sbjct: 15  TTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 294 EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTEL 353
           + + +       +       +L+  D  +      L  L L  C ++   P        L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 354 TFLDLSENELEGTYPQWL-SELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG 412
            +L L +N L+           NL  + L  N ++           +L  L+L +N  + 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 413 ELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVG 472
             P        +M L L +NN S    ++++ +  L  L L++N +  +  A    + + 
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSG 505
               SS+     +P       L   L+ N   G
Sbjct: 252 KFRGSSSEVPCSLPQRLAGRDL-KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (192), Expect = 1e-16
 Identities = 60/281 (21%), Positives = 97/281 (34%), Gaps = 17/281 (6%)

Query: 138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQG 197
                    L  ++P  +      + + L  N I    ++     +NL  L L  N++  
Sbjct: 14  VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 198 QIPAEIGNLTNLHKLSLRQNKFSGGI-PLSLLQLRKLETLDLQRNSLSGEIPEDIGTLAN 256
              A    L  L +L L  N     + P +   L +L TL L R  L    P     LA 
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 257 ITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK 316
           +  L L +NAL      + R++  L  L L  N +S         L  +  L L  N++ 
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 317 WNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGT-----YPQWL 371
                +      L  L L + ++       L+    L +L L++N             WL
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250

Query: 372 SELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSG 412
            +        S + +  SLP  L       +  L+ N+  G
Sbjct: 251 QKFR-----GSSSEVPCSLPQRL---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 6e-15
 Identities = 64/256 (25%), Positives = 96/256 (37%), Gaps = 6/256 (2%)

Query: 135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL 194
                + L  N ++    +     R L  L L +N +    ++   GL  L+QL L DN 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 195 IQGQI-PAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGT 253
               + PA    L  LH L L +       P     L  L+ L LQ N+L     +    
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 254 LANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN 313
           L N+T L L  N ++    ++ R +  L  L L  N ++        DL  + +LYL  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 314 KLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL-WLSTQTELTFLDLSENELEGTYPQWLS 372
            L      ++ P   L  L L             L     L     S +E+  + PQ L+
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW--LQKFRGSSSEVPCSLPQRLA 269

Query: 373 ELNLGTVILSDNMLTG 388
             +L    L+ N L G
Sbjct: 270 GRDLKR--LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 2e-13
 Identities = 49/283 (17%), Positives = 85/283 (30%), Gaps = 28/283 (9%)

Query: 413 ELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVG 472
            +P  I  ++    + L  N  S     S      L +L L +N  +    A  +   + 
Sbjct: 25  AVPVGIPAASQR--IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 473 HVDISSNRFSGEVPSSFGVTILM----LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT 528
                S+              L     L L         P     L+ LQ+L L DN L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 529 GEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQG 588
                    L +L  L L    +          L SL  L L  N +    P +F +L  
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 589 MIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSS 648
           ++                     L  N  ++    +   L     + L++N    +  + 
Sbjct: 203 LMT------------------LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA- 243

Query: 649 LGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
                 L+    S +++  ++P      ++     L+ N L G
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 8e-13
 Identities = 52/283 (18%), Positives = 87/283 (30%), Gaps = 28/283 (9%)

Query: 437 HVPKSISNIYRLLVLDLSNNSFSG----EFPAFGSDSLVGHVDISSNRFSGEVPSSFGVT 492
            VP  I        + L  N  S      F A  + +++        R      +   + 
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 493 ILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALE 552
             +      +     P     L  L  L L    L    P     L++LQ L L++ AL+
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 553 GSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDL 612
               D   +L +L  L L  N +      +F  L  +                  +   L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL------------------DRLLL 184

Query: 613 IVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPST 672
             N        + + L     + L  N LS     +L  L+ L+ L L+ N    +  + 
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

Query: 673 FGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSG 715
                 L+    S + +   +P    +L       L+ N L G
Sbjct: 245 -PLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 3e-11
 Identities = 48/273 (17%), Positives = 74/273 (27%), Gaps = 45/273 (16%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNN------ 526
                       VP         + L  N+ S     +      L  L LH N       
Sbjct: 15  TTSCPQQGLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA 73

Query: 527 -------------------LTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQI 567
                              L    PA    L  L  L+L    L+         L +LQ 
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133

Query: 568 LDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKS 627
           L L +N L      +F +L            L  +F     I  +          L    
Sbjct: 134 LYLQDNALQALPDDTFRDLG----------NLTHLFLHGNRISSVPERAFRGLHSLD--- 180

Query: 628 LAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHN 687
                 + L  N+++   P +   L  L +L L  N L          L  L+ L L+ N
Sbjct: 181 -----RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 688 SLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPES 720
                  +       L     S++++   +P+ 
Sbjct: 236 PWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 2e-10
 Identities = 44/233 (18%), Positives = 76/233 (32%), Gaps = 10/233 (4%)

Query: 519 HLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGK 578
                   L    P  +   ++ Q + L    +            +L IL L +N L   
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 579 IPSSFGNLQGMIDTPSILPTL-----PEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSL 633
             ++F  L  +               P  F     +  L ++    +         + +L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 634 M--DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
               L +N L      +   L  L  L L  N++       F  L  L+ L L  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 692 KIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQ 744
             P  F  L +L +LYL  N LS    E+    R +  +   +N  +C  + +
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 4/193 (2%)

Query: 124 GEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLK 183
             V    F  L RL  L L    L    P     L  L++L L  NA++         L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSL 243
           NL  L L  N I          L +L +L L QN+ +   P +   L +L TL L  N+L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 244 SGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQ 303
           S    E +  L  +  L L++N       ++      L   R  S+ +   +      L 
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQR---LA 269

Query: 304 GMKSLYLGGNKLK 316
           G     L  N L+
Sbjct: 270 GRDLKRLAANDLQ 282

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (175), Expect = 2e-14
 Identities = 45/205 (21%), Positives = 67/205 (32%), Gaps = 7/205 (3%)

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS 571
           S ++    ++    NLT   P  L       +L+L    L       L   T L  L+L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIY 631
              L          + G +D          +    +    ++    N    L   +L   
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 632 SLM---DLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNS 688
             +    L  N+L    P  L     L+ L+L+ N L          LE L+TL L  NS
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 689 LSGKIPQTFAKLQQLTSLYLSNNKL 713
           L   IP+ F     L   +L  N  
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 2e-12
 Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 7/199 (3%)

Query: 494 LMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG 553
           L ++  +   +  LP +L        L L +N L     A L   + L  LNL    L  
Sbjct: 13  LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK 69

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI 613
              DG   +     L  +    L  +  +   L  +  + + L +LP      +     +
Sbjct: 70  LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129

Query: 614 VNWKNSKRGLSSKSLAIYSLMDL---SNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP 670
               N  + L    L     ++    +NN L+      L  L+ L +L L  N L   IP
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188

Query: 671 STFGNLEILETLDLSHNSL 689
             F    +L    L  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 42/207 (20%), Positives = 71/207 (34%), Gaps = 8/207 (3%)

Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDS 288
           ++     ++  + +L+  +P D+    + TIL LS N L      ++   T+L  L LD 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 289 NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS 348
             L+         + G   L     +       ++    +L         +       L 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV---SFNRLTSLPLGALR 121

Query: 349 TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSR 407
              EL  L L  NEL+   P  L+       +   N     LP  L     NL  L+L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 408 NNFSGELPETIGQSTSVMVLMLSSNNF 434
           N+    +P+    S  +    L  N +
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 46/208 (22%), Positives = 74/208 (35%), Gaps = 8/208 (3%)

Query: 108 RIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLS 167
           ++ S + ++    ++   +P     + T    L L +N L     + L     L  L+L 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPKDTT---ILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 168 ANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSL 227
               E         L  L  L L  N +Q            L  L +  N+ +     +L
Sbjct: 64  RA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSLPLGAL 120

Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLD 287
             L +L+ L L+ N L    P  +     +  L+L+NN LT      +  +  L TL L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 288 SNVLSGEISTWLFDLQGMKSLYLGGNKL 315
            N L   I    F    +   +L GN  
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 3/65 (4%)

Query: 648 SLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLY 707
            +  +     +N     L   +P           L LS N L      T     +LT L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 708 LSNNK 712
           L   +
Sbjct: 62  LDRAE 66

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 3e-12
 Identities = 43/270 (15%), Positives = 89/270 (32%), Gaps = 22/270 (8%)

Query: 470 LVGHVDISSNRFSGEVPSS-FGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT 528
           L   +D++      +V        ++      +     L ++ S   + QH+DL ++ + 
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV-QHMDLSNSVIE 59

Query: 529 GE-FPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSS----- 582
                  LSQ S LQ L+L    L   I + L+  ++L  L+LS  +   +         
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 583 FGNLQGMIDTPSILPT---------LPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSL 633
              L  +  +     T                 + +     N + S      +       
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 634 MDLSNNQL-SGEIPSSLGSLKGLKSLNLSY-NQLQGNIPSTFGNLEILETLDLSHNSLSG 691
           +DLS++ +   +       L  L+ L+LS    +        G +  L+TL +      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 692 KIPQTFAKLQQLTSLYLSNNKLSGRIPESP 721
            +       + L  L ++ +  +     + 
Sbjct: 240 TLQ---LLKEALPHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 8e-10
 Identities = 34/270 (12%), Positives = 86/270 (31%), Gaps = 18/270 (6%)

Query: 330 TELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGS 389
             L L   ++   +   L +Q  +       + ++    +  S   +  + LS++++  S
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 390 LPPPLFES-RNLSVLVLSRNNFSGELPETIGQSTSVMVL------------MLSSNNFSG 436
               +      L  L L     S  +  T+ ++++++ L            + +  +   
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 437 HVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILML 496
            + +   +            + +         +L G+           +       + + 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 497 SLSENKFSGQLPQNLSNLSLLQHLDLHD-NNLTGEFPAFLSQLSSLQVLNLRNTALEGSI 555
                       Q    L+ LQHL L    ++  E    L ++ +L+ L +     +G++
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 556 TDGLSNLTSLQILDLSNNNLLGKIPSSFGN 585
                 L  LQI   + ++       + GN
Sbjct: 242 QLLKEALPHLQI---NCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 22/291 (7%)

Query: 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEG 173
           TLDL+  ++  +V G   +    +       + ++  +       R ++ +DLS + IE 
Sbjct: 4   TLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 174 K-LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRK 232
             L   ++    L+ L L+   +   I   +   +NL +L+L          L  L    
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS 292
               +L  +       + +          ++   L+G      ++    +  R  + V  
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 293 GEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCS-VRGSIPLWLSTQT 351
               + +      +  +                   L  LSL  C  +     L L    
Sbjct: 181 DLSDSVMLKNDCFQEFF---------------QLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 352 ELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSV 402
            L  L +     +GT         L  + ++ +  T    P +   +N  +
Sbjct: 226 TLKTLQVFGIVPDGTLQLLKE--ALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 14/63 (22%), Positives = 26/63 (41%)

Query: 103 LAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLE 162
           LA  F    +  +DLS + ++        +  ++L  L L+   L+  I + L     L 
Sbjct: 39  LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 98

Query: 163 FLD 165
            L+
Sbjct: 99  RLN 101

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 1e-10
 Identities = 37/199 (18%), Positives = 77/199 (38%), Gaps = 10/199 (5%)

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS 571
              +     +L   ++T       ++L+S+  +   N+ ++     G+  L ++  L L+
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLN 76

Query: 572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIY 631
            N L    P    NL+ +         + ++ S     +   ++ +++     +  + + 
Sbjct: 77  GNKLTDIKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
            L  L          + L  L  L +L+L  NQ+   +P     L  L+ L LS N +S 
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192

Query: 692 KIPQTFAKLQQLTSLYLSN 710
              +  A L+ L  L L +
Sbjct: 193 --LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 32/192 (16%), Positives = 68/192 (35%), Gaps = 10/192 (5%)

Query: 494 LMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG 553
           +  +L +   +  + Q  + L+ +  +  +++++       +  L ++  L L    L  
Sbjct: 27  IKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTD 82

Query: 554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI 613
                L+NL +L  L L  N +              +       +         +++ L 
Sbjct: 83  IKP--LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140

Query: 614 VNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTF 673
           +             L     + L +NQ+S  +P  L  L  L++L LS N +        
Sbjct: 141 LGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRAL 196

Query: 674 GNLEILETLDLS 685
             L+ L+ L+L 
Sbjct: 197 AGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 35/199 (17%), Positives = 79/199 (39%), Gaps = 14/199 (7%)

Query: 351 TELTFLDLSENELEGTYPQWLSEL-NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNN 409
            E    +L +  +     Q  +EL ++  +I +++ +       +    N++ L L+ N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNK 79

Query: 410 FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDS 469
            +      I    ++  L     + +     S     + L      ++   +        
Sbjct: 80  LTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 470 LVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG 529
            +  + + +N+ +     S    +  LSL +N+ S  +P  L+ L+ LQ+L L  N+++ 
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS- 191

Query: 530 EFPAFLSQLSSLQVLNLRN 548
           +  A  + L +L VL L +
Sbjct: 192 DLRAL-AGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 30/202 (14%), Positives = 67/202 (33%), Gaps = 15/202 (7%)

Query: 254 LANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGN 313
            A      L   ++T A+ Q+   +  +  +  +++ +       +  L  +  L+L GN
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 314 KLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSE 373
           KL     ++ +       L         S+      ++                   ++ 
Sbjct: 79  KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE---------HNGISDING 129

Query: 374 LNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNN 433
           L     + S  +    +      SR   +  LS  +        +   T +  L LS N+
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189

Query: 434 FSGHVPKSISNIYRLLVLDLSN 455
            S    ++++ +  L VL+L +
Sbjct: 190 ISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 198 QIPAEIG------NLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDI 251
            +P  I             K +L++   +  +  +  +L  ++ +    + +       I
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--I 64

Query: 252 GTLANITILALSNNALTG 269
             L N+T L L+ N LT 
Sbjct: 65  QYLPNVTKLFLNGNKLTD 82

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.5 bits (137), Expect = 2e-09
 Identities = 59/324 (18%), Positives = 101/324 (31%), Gaps = 18/324 (5%)

Query: 398 RNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNS 457
           R    L L+    S  LPE      S   L+ S N+ +  +P+   +   L  L + NN+
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQS---LKSLLVDNNN 89

Query: 458 FSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLL 517
                        +G  +    +      SSF + I+ +  +  K    LP +L  ++  
Sbjct: 90  LKALSDLPPLLEYLGVSNNQLEKLPELQNSSF-LKIIDVDNNSLKKLPDLPPSLEFIAAG 148

Query: 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG 577
            +       L            +  +  L +  L        +N+        +   L  
Sbjct: 149 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTT 208

Query: 578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLS 637
               +          PS+              +                 L+        
Sbjct: 209 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 268

Query: 638 NNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTF 697
            N  S EI S       L+ LN+S N+L   +P+    LE    L  S N L+ ++P+  
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLA-EVPEL- 322

Query: 698 AKLQQLTSLYLSNNKLSGRIPESP 721
              Q L  L++  N L    P+ P
Sbjct: 323 --PQNLKQLHVEYNPLRE-FPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 8e-07
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 498 LSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD 557
              N  S ++         L+ L++ +N L  E PA       L+ L      L   + +
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE 321

Query: 558 GLSNLTSLQILDLSNNNL--LGKIPSSFGNLQ 587
              NL     L +  N L     IP S  +L+
Sbjct: 322 LPQNLKQ---LHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 142 LKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPA 201
              N  +  I S       LE L++S N    KL    A    L++LI   N +  ++P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNN----KLIELPALPPRLERLIASFNHLA-EVPE 321

Query: 202 EIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKL 233
              NL  LH   +  N      P     +  L
Sbjct: 322 LPQNLKQLH---VEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 60/351 (17%), Positives = 100/351 (28%), Gaps = 47/351 (13%)

Query: 207 TNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA 266
              H+L L     S  +P     L   E+L    NSL+ E+PE   +L ++ +   +  A
Sbjct: 38  RQAHELELNNLGLSS-LPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 267 LTGAIP------QSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDN 320
           L+   P       S   + KL  L+  S +   ++              L       N  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 321 VSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVI 380
             +     L  L+           L     +  + +  +    E    Q L  L      
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 381 LSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLM------LSSNNF 434
            +       LPP L         +         L            L          N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 435 SGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTIL 494
           S  +         L  L++SNN                           E+P+     + 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI------------------------ELPALPP-RLE 307

Query: 495 MLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLN 545
            L  S N  + ++P+   N   L+ L +  N L  EFP     +  L++ +
Sbjct: 308 RLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 51/338 (15%), Positives = 103/338 (30%), Gaps = 25/338 (7%)

Query: 231 RKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNV 290
           R+   L+L    LS  +PE      ++  L  S N+LT  +P+  +++  L+    +   
Sbjct: 38  RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 291 LSGEIST-WLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLST 349
           LS          +   +   L   +      +  V    L +L     S+          
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 350 QTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNN 409
           +      +L            L +L    + L   +   ++   L E +NL  L     +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 410 FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDS 469
            +          +   + +  +                       + S +          
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL--------DVSENIFSGLSELPP 264

Query: 470 LVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTG 529
            + +++ SSN           +  L +  S NK   +LP        L+ L    N+L  
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNV--SNNKLI-ELPALPPR---LERLIASFNHLA- 317

Query: 530 EFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQI 567
           E P       +L+ L++    L     D   ++  L++
Sbjct: 318 EVP---ELPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 9e-05
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLD 165
                SL  L++S N +  E+P    A   RL  L    N+L   +P    NL+    L 
Sbjct: 280 CDLPPSLEELNVSNNKLI-ELP----ALPPRLERLIASFNHLA-EVPELPQNLKQ---LH 330

Query: 166 LSANAIEGKLSSRVAGLKNLK 186
           +  N +  +       +++L+
Sbjct: 331 VEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 182 LKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRN 241
             +L++L + +N +  ++PA    L  L       N  +  +P      + L+ L ++ N
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLAE-VPELP---QNLKQLHVEYN 334

Query: 242 SLSGEIPEDIGTLANITI 259
            L  E P+   ++ ++ +
Sbjct: 335 PLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLG 577
                + N  + E  +      SL+ LN+ N  L   +      L  L     S N+ L 
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNH-LA 317

Query: 578 KIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVN 615
           ++P    NL+ +    + L   P+I   P  ++DL +N
Sbjct: 318 EVPELPQNLKQLHVEYNPLREFPDI---PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 659 NLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIP 718
               N     I S       LE L++S+N L  ++P   A   +L  L  S N L+  +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP---ALPPRLERLIASFNHLA-EVP 320

Query: 719 ESPQ 722
           E PQ
Sbjct: 321 ELPQ 324

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 653 KGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNK 712
           +    L L+   L  ++P    +   LE+L  S NSL+ ++P+    L+ L     +   
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 713 LSGRIPESPQMD 724
           LS   P    + 
Sbjct: 93  LSDLPPLLEYLG 104

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (137), Expect = 3e-09
 Identities = 23/131 (17%), Positives = 37/131 (28%), Gaps = 6/131 (4%)

Query: 627 SLAIYSLMDLSNNQLSGE-IPSSLGSLKGLKSLNLSYNQLQG----NIPSTFGNLEILET 681
           SL I SL D+   +LS       L  L+  + + L    L      +I S       L  
Sbjct: 1   SLDIQSL-DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 682 LDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGM 741
           L+L  N L         +  Q  S  +    L                +          +
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 742 QIQVVCPEDVQ 752
              ++    +Q
Sbjct: 120 SDNLLGDAGLQ 130

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 1e-08
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 517 LQHLDLHDNNLTGE-FPAFLSQLSSLQVLNLRNTALEG----SITDGLSNLTSLQILDLS 571
           +Q LD+    L+   +   L  L   QV+ L +  L       I+  L    +L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 572 NNNLLGKIPSSFGNL 586
           +N L           
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 1e-07
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 635 DLSNNQLSGE----IPSSLGSLKGLKSLNLSYNQLQGNIPSTFG-----NLEILETLDLS 685
            L++  +S      + ++L +   L+ L+LS N L                 +LE L L 
Sbjct: 375 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLY 434

Query: 686 HNSLSGKIPQTFAKLQQ 702
               S ++      L++
Sbjct: 435 DIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 4e-07
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 496 LSLSENKFS-GQLPQNLSNLSLLQHLDLHDNNLTGE----FPAFLSQLSSLQVLNLRNTA 550
           L +   + S  +  + L  L   Q + L D  LT        + L    +L  LNLR+  
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 551 LEGSITDGL-----SNLTSLQILDLSNNN 574
           L       +     +    +Q L L N  
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 4e-07
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 208 NLHKLSLRQNKFSGGIPLSLL-QLRKLETLDLQRNSLSGEIPEDIG----TLANITILAL 262
           ++  L ++  + S      LL  L++ + + L    L+    +DI         +  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 263 SNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTW 298
            +N L       +    +  + ++    L     T 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 5e-07
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 510 NLSNLSLLQHLDLHDNNLTGE----FPAFLSQLSSLQVLNLRNTALEGSITDGLS----- 560
                S+L+ L L D +++        A L    SL+ L+L N  L  +    L      
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 561 NLTSLQILDLSNNNLLGKIPSSFGNLQ 587
               L+ L L +     ++      L+
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 655 LKSLNLSYNQLQGN----IPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQ-----LTS 705
           L+ L L+   +  +    + +T      L  LDLS+N L         +  +     L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 706 LYLSNNKLSGRIPES 720
           L L +   S  + + 
Sbjct: 431 LVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 2e-06
 Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 161 LEFLDLSANAI-EGKLSSRVAGLKNLKQLILDDNLIQGQ----IPAEIGNLTNLHKLSLR 215
           ++ LD+    + + + +  +  L+  + + LDD  +       I + +     L +L+LR
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 216 QNKFSGGIPLSLLQLRKLETLDLQRNSLSG 245
            N+        +LQ  +  +  +Q+ SL  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 9/98 (9%)

Query: 144 DNNLNGSIPSQLFNLRYLEFLDLSANAIEGK----LSSRVAGLKNLKQLILDDNLIQGQI 199
           D  +             L  L L+   +       L++ +    +L++L L +N +    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 200 PAEIG-----NLTNLHKLSLRQNKFSGGIPLSLLQLRK 232
             ++          L +L L    +S  +   L  L K
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNG----SIPSQLFNLRYLEFLDL 166
            + +LD+    +           L +   + L D  L       I S L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 167 SANAIEGK 174
            +N +   
Sbjct: 63  RSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 8e-05
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 184 NLKQLILDDNLIQGQIPAEI-GNLTNLHKLSLRQNKFSG----GIPLSLLQLRKLETLDL 238
           +++ L +    +     AE+   L     + L     +      I  +L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 239 QRNSLSGEIPEDIGTL-----ANITILALSNN 265
           + N L       +          I  L+L N 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 8e-05
 Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 352 ELTFLDLSENELEGTYPQWLSEL--NLGTVILSDNMLTG----SLPPPLFESRNLSVLVL 405
           ++  LD+   EL       L  L      V L D  LT      +   L  +  L+ L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 406 SRNNFSGELPETIGQSTSVMVLMLSSNNFSGH 437
             N         + Q        +   +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-05
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 26/111 (23%)

Query: 443 SNIYRLLVLDLSNNSFSGEFPAFGSDSLVG-----HVDISSNRFSGEVPSSFGVTILMLS 497
                L VL L++   S    +  + +L+       +D+S+N          G+  L+ S
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA-----GILQLVES 420

Query: 498 LSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLS----SLQVL 544
           + +               LL+ L L+D   + E    L  L     SL+V+
Sbjct: 421 VRQPG------------CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 9e-05
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 111 SLMTLDLSYNSMQGEVP---GTGFANLTRLTYLDLKDNNLNGSIPSQLF-----NLRYLE 162
            L  L L+   +                 L  LDL +N L  +   QL          LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 163 FLDLSANAIEGKLSSRVAGLKNLK 186
            L L       ++  R+  L+  K
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 9/98 (9%)

Query: 192 DNLIQGQIPAEIGNLTNLHKLSLRQNKFSG----GIPLSLLQLRKLETLDLQRNSLSGEI 247
           D  ++          + L  L L     S      +  +LL    L  LDL  N L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 248 PEDIGT-----LANITILALSNNALTGAIPQSIRNMTK 280
              +          +  L L +   +  +   ++ + K
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 374 LNLGTVILSDNMLTGSLPPPLFES-RNLSVLVLSRNNFSGE----LPETIGQSTSVMVLM 428
           L++ ++ +    L+ +    L    +   V+ L     +      +   +  + ++  L 
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 429 LSSNNFSGHVPKSI-----SNIYRLLVLDLSNN 456
           L SN         +     +   ++  L L N 
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 12/88 (13%)

Query: 473 HVDISSNRFSGEVPSSFGVTIL---MLSLSENKFSGQ----LPQNLSNLSLLQHLDLHDN 525
            +DI     S    +     +    ++ L +   +      +   L     L  L+L  N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 526 NLTGE-----FPAFLSQLSSLQVLNLRN 548
            L             +    +Q L+L+N
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 24/135 (17%), Positives = 38/135 (28%), Gaps = 41/135 (30%)

Query: 523 HDNNLTGEFPAFLSQLSSLQVLNLRNTALEG----SITDGLSNLTSLQILDLSNNNLLGK 578
            D  +           S L+VL L +  +      S+   L    SL+ LDLSNN L   
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 579 IPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSN 638
                  ++ +     +L  L                                    L +
Sbjct: 413 GILQL--VESVRQPGCLLEQL-----------------------------------VLYD 435

Query: 639 NQLSGEIPSSLGSLK 653
              S E+   L +L+
Sbjct: 436 IYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 26/111 (23%)

Query: 233 LETLDLQRNSLSGE-IPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVL 291
           +++LD+Q   LS     E +  L    ++ L +  LT A  + I                
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDI---------------- 47

Query: 292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSI-----VPKCMLTELSLRSC 337
               S+ L     +  L L  N+L       +      P C + +LSL++C
Sbjct: 48  ----SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 5/70 (7%)

Query: 397 SRNLSVLVLSRNNFSGE-LPETIGQSTSVMVLMLSSNNFSG----HVPKSISNIYRLLVL 451
           S ++  L +     S     E +       V+ L     +      +  ++     L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 452 DLSNNSFSGE 461
           +L +N     
Sbjct: 61  NLRSNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 668 NIPSTFGNLEILETLDLSHNSLSGK----IPQTFAKLQQLTSLYLSNNKLSGRIPES 720
                     +L  L L+   +S      +  T      L  L LSNN L       
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 10/85 (11%)

Query: 346 WLSTQTELTFLDLSENELEGTYPQWLSEL-----NLGTVILSDNMLTGSLPPPLFES--- 397
                + L  L L++ ++  +    L+       +L  + LS+N L  +    L ES   
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 398 --RNLSVLVLSRNNFSGELPETIGQ 420
               L  LVL    +S E+ + +  
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 5e-09
 Identities = 39/206 (18%), Positives = 74/206 (35%), Gaps = 10/206 (4%)

Query: 513 NLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSN 572
            L+    +    +N+T       + L  +  L+   T +     +G+  L +L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 573 NNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYS 632
           N +     +   NL  + +       L  + +         ++  +++    +    + +
Sbjct: 73  NQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 633 LMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGK 692
           L  L  +       S L  L       LS    Q +  +   NL  L TL    N +S  
Sbjct: 131 LQVLYLDLNQITNISPLAGLT--NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 693 IPQTFAKLQQLTSLYLSNNKLSGRIP 718
            P   A L  L  ++L NN++S   P
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.3 bits (129), Expect = 8e-09
 Identities = 43/215 (20%), Positives = 80/215 (37%), Gaps = 12/215 (5%)

Query: 496 LSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI 555
           ++  ++  +  + Q  ++L  +  L      +T      +  L++L  L L++  +    
Sbjct: 24  IAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT--D 77

Query: 556 TDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVN 615
              L NLT +  L+LS N L      +       +D  S   T     +    +Q L ++
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137

Query: 616 WKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGN 675
                       L     + + N Q+S   P  L +L  L +L    N++    P    +
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LAS 193

Query: 676 LEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN 710
           L  L  + L +N +S   P   A    L  + L+N
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 38/227 (16%), Positives = 74/227 (32%), Gaps = 17/227 (7%)

Query: 229 QLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDS 288
            L     +   +++++  + +    L  IT L+     +T    + ++ +  L+ L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 289 NVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLS 348
           N         + DL  +K+L          + +  V      +           I     
Sbjct: 73  N--------QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 349 TQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRN 408
                    L  +  + T    L+ L      LS      S   PL     L+ L    N
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 409 NFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN 455
             S   P  +    +++ + L +N  S   P  ++N   L ++ L+N
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 17/226 (7%)

Query: 205 NLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN 264
            L N  K++  ++  +  +  +   L  + TL      ++    E +  L N+  L L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIV 324
           N +T   P         + L           +             +    L       + 
Sbjct: 73  NQITDLAPLKNLTKITELELS---------GNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 325 PKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDN 384
           P   L+ L +    +     +               N          +   L T+   DN
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 385 MLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLS 430
            ++     PL    NL  + L  N  S   P  +  ++++ ++ L+
Sbjct: 184 KISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 184 NLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDL 238
            L  L  DDN I    P  + +L NL ++ L+ N+ S   PL+      L  + L
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA--NTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 203 IGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILAL 262
           + NL+ L  L    NK S   PL+   L  L  + L+ N +S   P  +   +N+ I+ L
Sbjct: 169 LANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 263 SN 264
           +N
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFL 164
           P+  +  L TL    N +    P    A+L  L  + LK+N ++   P  L N   L  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 165 DLS 167
            L+
Sbjct: 223 TLT 225

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 1e-08
 Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 512 SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLS 571
           + L+      L   N+T       + L  +  L      ++ SI DG+  L +L  ++ S
Sbjct: 15  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFS 70

Query: 572 NNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIY 631
           NN L    P    NL  ++D       + +I           +   N++         + 
Sbjct: 71  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 128

Query: 632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSG 691
           +L  L  +  +    S+L  L  L+ LN S NQ+    P    NL  LE LD+S N +S 
Sbjct: 129 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD 186

Query: 692 KIPQTFAKLQQLTSL 706
                 AKL  L SL
Sbjct: 187 --ISVLAKLTNLESL 199

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 426 VLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEV 485
           VL L+  + +  V   +  +  +  LDLS+N      PA  +   +  +  S N      
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 486 PSSFGVTILMLSLSENKF-SGQLPQNLSNLSLLQHLDLHDNNLTGE---FPAFLSQLSSL 541
             +    +  L L  N+       Q L +   L  L+L  N+L  E          L S+
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 542 QVL 544
             +
Sbjct: 120 SSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 26/105 (24%)

Query: 634 MDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEIL-------------- 679
           + L++  L+  +   L  L  +  L+LS+N+L+   P+    L  L              
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 680 --------ETLDLSHNSL-SGKIPQTFAKLQQLTSLYLSNNKLSG 715
                   + L L +N L      Q      +L  L L  N L  
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 30/147 (20%)

Query: 542 QVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPE 601
           +VL+L +  L  ++   L  L  +  LDLS+N L    P+                    
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-------------------- 38

Query: 602 IFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQL-SGEIPSSLGSLKGLKSLNL 660
             +    ++ L  +    +      +L     + L NN+L        L S   L  LNL
Sbjct: 39  -LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 97

Query: 661 SYNQL------QGNIPSTFGNLEILET 681
             N L      Q  +     ++  + T
Sbjct: 98  QGNSLCQEEGIQERLAEMLPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 450 VLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQ 509
           VL L++   +          LV H+D+S NR     P+   +  L +  + +     +  
Sbjct: 2   VLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 59

Query: 510 NLSNLSLLQHLDLHDNNLTG-EFPAFLSQLSSLQVLNLRN---TALEGSITDGLSNLTSL 565
            ++NL  LQ L L +N L        L     L +LNL+       EG        L S+
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 566 QIL 568
             +
Sbjct: 120 SSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 8/110 (7%)

Query: 139 YLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQ 198
            L L   +L  ++   L  L  +  LDLS N    +L +    L  L+ L +        
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHN----RLRALPPALAALRCLEVLQASDNAL 55

Query: 199 I-PAEIGNLTNLHKLSLRQNKFSGGIPLSLL-QLRKLETLDLQRNSLSGE 246
                + NL  L +L L  N+      +  L    +L  L+LQ NSL  E
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 9/120 (7%)

Query: 114 TLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEG 173
            L L++  +           L  +T+LDL  N L    P+ L  LR LE L  S NA+E 
Sbjct: 2   VLHLAHKDLTVL---CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 174 KLSSRVAGLKNLKQLILDDNLIQG-QIPAEIGNLTNLHKLSLRQNKFSG--GIPLSLLQL 230
                      L++L+L +N +Q       + +   L  L+L+ N      GI   L ++
Sbjct: 58  VDGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 6/124 (4%)

Query: 186 KQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSG 245
           + L L    +   +   +  L  +  L L  N+     P +L  LR LE L    N+   
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--L 55

Query: 246 EIPEDIGTLANITILALSNNALTG-AIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG 304
           E  + +  L  +  L L NN L   A  Q + +  +LV L L  N L  E        + 
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 305 MKSL 308
           + S+
Sbjct: 116 LPSV 119

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 37/203 (18%), Positives = 72/203 (35%), Gaps = 24/203 (11%)

Query: 473 HVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNL-SNLSLLQHLDLHDNNLTGEF 531
            VD +      E+P    +    L L++N+        L   L  L  L+L  N LTG  
Sbjct: 12  TVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE 70

Query: 532 PAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID 591
           P      S +Q L L    ++         L  L+ L+L +N +   +P SF +      
Sbjct: 71  PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH------ 124

Query: 592 TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGS 651
             + L +L    +       L    +  ++              L+        PS    
Sbjct: 125 -LNSLTSLNLASNPFNCNCHLAWFAEWLRK------------KSLNGGAARCGAPS---K 168

Query: 652 LKGLKSLNLSYNQLQGNIPSTFG 674
           ++ ++  +L +++ + +  ++ G
Sbjct: 169 VRDVQIKDLPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 119 YNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSR 178
             +   E+    F  L +L  L+L DN ++  +P    +L  L  L+  A+         
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHL 144

Query: 179 VAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKF 219
               + L++  L+    +   P++   + ++    L  ++F
Sbjct: 145 AWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHSEF 182

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 21/217 (9%), Positives = 47/217 (21%), Gaps = 12/217 (5%)

Query: 506 QLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSL 565
           ++P +L        L      L        S    L+ + +    +   I   + +    
Sbjct: 22  EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 566 QILDLSNNNLLGKIPSSFGNLQGMIDTPS----------ILPTLPEIFSFPVEIQDLIVN 615
                          +                                   +      +N
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 616 WKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGN 675
               +R           ++ L+ N +      +    +  +      N L+      F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 676 LEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNK 712
                 LD+S   +          L++L +    N K
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 29/245 (11%), Positives = 64/245 (26%), Gaps = 37/245 (15%)

Query: 368 PQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVL 427
              +   +    +  ++ +T  +P  L   RN   L                    +  +
Sbjct: 2   HHRICHCSNRVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKI 58

Query: 428 MLSSNNFSGHVP-------------------------------KSISNIYRLLVLDLSNN 456
            +S N+    +                                        +    + + 
Sbjct: 59  EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 118

Query: 457 SFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSL 516
               +  +     L    +I+ +              ++L L++N          +   L
Sbjct: 119 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL 178

Query: 517 LQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLL 576
            +     +NNL           S   +L++  T +    + GL NL  L+     N   L
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---L 235

Query: 577 GKIPS 581
            K+P+
Sbjct: 236 KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 11/225 (4%)

Query: 474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDL----------H 523
                ++ + E+PS      + L     K         S    L+ +++           
Sbjct: 13  FLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 71

Query: 524 DNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSF 583
           D          +    +  +L +   A +         +++  I  L + + +  +    
Sbjct: 72  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 131

Query: 584 GNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSG 643
            ++Q  I+  +I        SF   I  L  N        +     +  L    NN L  
Sbjct: 132 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEE 191

Query: 644 EIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNS 688
                     G   L++S  ++         NL+ L      +  
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 8e-05
 Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 8/228 (3%)

Query: 235 TLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE 294
               Q + ++ EIP D+    N   L      L      +      L  + +  N +   
Sbjct: 12  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 295 ISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELT 354
           I   +F                         + +     L   +        +     L 
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 355 FLDLSENELEGTYPQWLSELNLG-----TVILSDNMLTGSLPPPLFESRNLSVLVLSRNN 409
            + L   +    +    +           + L+ N +          ++   + +   NN
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 410 FSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNS 457
                 +    ++  ++L +S           + N+ +L      N  
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 9/46 (19%), Positives = 15/46 (32%)

Query: 122 MQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLS 167
              E+P   F   +    LD+    ++      L NL+ L      
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 671 STFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKL 713
           + + N      LDL    +   I    A L Q  ++  S+N++
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL 190
           + N  R   LDL+   +   I +    L   + +D S N I          L+ LK L++
Sbjct: 14  YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTLLV 70

Query: 191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFS 220
           ++N I          L +L +L L  N   
Sbjct: 71  NNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 21/163 (12%), Positives = 48/163 (29%), Gaps = 20/163 (12%)

Query: 502 KFSGQLPQNL---SNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDG 558
           K + +L +     +N    + LDL    +        + L     ++  +  +     DG
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDG 58

Query: 559 LSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKN 618
              L  L+ L ++NN +          L  +                 +   + +V   +
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT--------------ELILTNNSLVELGD 104

Query: 619 SKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLS 661
                S KSL    ++              +  +  ++ L+  
Sbjct: 105 LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 21/160 (13%), Positives = 45/160 (28%), Gaps = 18/160 (11%)

Query: 526 NLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGN 585
            L  +   + +     + L+LR   +   I +  + L     +D S+N +          
Sbjct: 6   ELIEQAAQYTN-AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI---------- 53

Query: 586 LQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEI 645
               +D   +L  L  +      I  +      +   L+   L   SL++L +      +
Sbjct: 54  --RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 111

Query: 646 PSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLS 685
            S                  +         +  +  LD  
Sbjct: 112 KSLTYLCIL----RNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPE 249
           L   LI+    A+  N     +L LR  K    I      L + + +D   N +     +
Sbjct: 3   LTAELIEQ--AAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLD 57

Query: 250 DIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG-EISTWLFDLQGMKSL 308
               L  +  L ++NN +        + +  L  L L +N L        L  L+ +  L
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117

Query: 309 YLGGNKLKWNDNVSIVPKCMLTEL 332
            +  N +    +  +     + ++
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQV 141

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 4e-05
 Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 8/135 (5%)

Query: 623 LSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGN----IPSTFGNLEI 678
           +  KSL    L  ++       + + L     +K + LS N +       +     + + 
Sbjct: 5   IEGKSL---KLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 679 LETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGL 738
           LE  + S         +    L+ L    L   KL                 +    S  
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 739 CGMQIQVVCPEDVQP 753
             ++   +    + P
Sbjct: 121 TPLEHLYLHNNGLGP 135

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 38/333 (11%), Positives = 100/333 (30%), Gaps = 18/333 (5%)

Query: 395 FESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSG----HVPKSISNIYRLLV 450
            E ++L +  ++  +    +   + +  SV  ++LS N         + ++I++   L +
Sbjct: 5   IEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 451 LDLS-NNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQ 509
            + S   +   +     +  L+    +   +      S             +  S   P 
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 510 NLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILD 569
               L            +            +     LR+     +  +  S     +   
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 570 LSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLA 629
                   K+  +    +G+           +         +   +  +S   ++ KS  
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 630 IYSLMDLSNNQLSGEIPSSLG------SLKGLKSLNLSYNQLQGNIPST-----FGNLEI 678
               + L++  LS    +++          GL++L L YN+++ +   T        +  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 679 LETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNN 711
           L  L+L+ N    +      +++++ S      
Sbjct: 304 LLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 32/334 (9%), Positives = 86/334 (25%), Gaps = 31/334 (9%)

Query: 228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTG----AIPQSIRNMTKLVT 283
           ++ + L+   +        +   +    ++  + LS N +       + ++I +   L  
Sbjct: 5   IEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 284 LRLDSN---VLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVR 340
                     +  EI   L  L          + ++ +DN             L   +  
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 341 GSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNL 400
             + L  +         ++    E    +          I+       +     +     
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 401 SVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSG 460
           S  +L             G    ++  +           +  +  +            S 
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH---------LGSSA 234

Query: 461 EFPAFGSDSLVGHVDISSNRFSGEVPSSFG--------VTILMLSLSENKFSGQLPQNL- 511
              A  S   +  + ++    S    ++          + +  L L  N+      + L 
Sbjct: 235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 294

Query: 512 ----SNLSLLQHLDLHDNNLTGEFPAFLSQLSSL 541
                 +  L  L+L+ N  + E    + ++  +
Sbjct: 295 TVIDEKMPDLLFLELNGNRFSEE-DDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 39/311 (12%), Positives = 85/311 (27%), Gaps = 33/311 (10%)

Query: 183 KNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG----GIPLSLLQLRKLETLDL 238
           K+LK   +     +  + A +    ++ ++ L  N         +  ++   + LE  + 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 239 QRNS---LSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEI 295
                  +  EIPE +  L    +     + +  +         + +   L  +     +
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 296 STWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTF 355
                 L       +     +   N        L  +      +        +   +   
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 356 LDLSENELEGTYPQWLSELNLGTVILSDNML--------------TGSLPPPLFESRNLS 401
           L  +   ++        E  L   +     L              + +L   L    NL 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 402 VLVLSRNNFSGELPETIGQ------STSVMVLMLSSNNFSGHVPKSI-----SNIYRLLV 450
            L L+    S      +        +  +  L L  N       +++       +  LL 
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 451 LDLSNNSFSGE 461
           L+L+ N FS E
Sbjct: 307 LELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 42/325 (12%), Positives = 92/325 (28%), Gaps = 18/325 (5%)

Query: 137 LTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK----LSSRVAGLKNLKQLILDD 192
           L    +   +   S+ + L     ++ + LS N I  +    LS  +A  K+L+     D
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 193 N---LIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPE 249
                ++ +IP  +  L        + +             ++     L +++    +  
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 250 DIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLY 309
               L       ++      A+ +  +N   L ++    N L                L 
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 310 LGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ 369
                ++       +   +L  L+         +     T    + L ++          
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248

Query: 370 WLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQS-----TSV 424
            L++  L     +             E+  L  L L  N    +   T+          +
Sbjct: 249 GLNDCLLS----ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 425 MVLMLSSNNFSGHVPKSISNIYRLL 449
           + L L+ N FS      +  I  + 
Sbjct: 305 LFLELNGNRFSE-EDDVVDEIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 41/347 (11%), Positives = 92/347 (26%), Gaps = 32/347 (9%)

Query: 256 NITILALSNNALTG----AIPQSIRNMTKLVTLRLDSNVLSGE----ISTWLFDLQGMKS 307
           +I   +L  +A+T     ++   +     +  + L  N +  E    +S  +   + ++ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 308 LYLGGNKLKWNDNVSIVPKCMLTELSLRS---CSVRGSIPLWLSTQTELTFLDLSENELE 364
                       +       +L +  L+     +VR S   +  T  E     LS++   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 365 GTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSV 424
                  + L           L         ++      ++   N            T  
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 425 MVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGE 484
              +L +     +  +     + LL                 + + +G   ++    S  
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 485 VPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVL 544
                G+   +LS             L N+ L Q L L  N +  +    L  +      
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGL-QTLRLQYNEIELDAVRTLKTVI----- 297

Query: 545 NLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMID 591
                            +  L  L+L+ N    +       ++ +  
Sbjct: 298 --------------DEKMPDLLFLELNGNR-FSEEDDVVDEIREVFS 329

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 9e-04
 Identities = 44/314 (14%), Positives = 89/314 (28%), Gaps = 37/314 (11%)

Query: 208 NLHKLSLRQNKFSG----GIPLSLLQLRKLETLDLQRNSLSGE----IPEDIGTLANITI 259
           ++   SL+ +  +      +   LL+   ++ + L  N++  E    + E+I +  ++ I
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 260 LALSNNAL----------TGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLY 309
              S+                + Q++    KL T+RL  N         L D     +  
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 310 LGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQ 369
                           K       L       + P   S       L+    +      Q
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 370 WLSELNLGTVILSDNMLTGSLPPPLFESRNLSVL-------VLSRNNFSGELPETIGQST 422
               L+   ++ +     G     L        L           +  S  L   +    
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 423 SVMVLMLSSNNFSGHVPKSISNIY------RLLVLDLSNNSFSGEFPAFGSDSLVG---- 472
           ++  L L+    S     ++ + +       L  L L  N    +        +      
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 473 --HVDISSNRFSGE 484
              ++++ NRFS E
Sbjct: 304 LLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 11/67 (16%)

Query: 659 NLSYNQLQGNIPS------TFGNLEILETLDLSHNSLSGKIPQTFA-----KLQQLTSLY 707
            L+   L     +      +      L+TL L +N +     +T       K+  L  L 
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 708 LSNNKLS 714
           L+ N+ S
Sbjct: 309 LNGNRFS 315

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 632 SLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPS-TFGNLEILETLDLSHNSLS 690
           S +  + +    +    L   + L  L +   Q   ++       L  L  L +  + L 
Sbjct: 11  SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 691 GKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGLCGMQIQ 744
              P  F    +L+ L LS N L   +         +  ++ + N   C   ++
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 2/144 (1%)

Query: 233 LETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIP-QSIRNMTKLVTLRLDSNVL 291
              L   R+    +    +    N+T L + N      +  + +R + +L  L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 292 SGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQT 351
                        +  L L  N L+     ++    +   +   +         WL    
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 352 ELTFLDLSENELEGTYPQWLSELN 375
           E     + E +L+      L+ + 
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMP 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 3/132 (2%)

Query: 592 TPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGS 651
            P  +  L  I S   +     ++ K  +      +  I  +++  ++  +  +     +
Sbjct: 5   KPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAA-TLRIIEEN 63

Query: 652 LKGLKSLNLSYNQLQG--NIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLS 709
           +  L SLNLS N+L    ++ S       L+ L+LS N L  +      K  +L  L+L 
Sbjct: 64  IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 123

Query: 710 NNKLSGRIPESP 721
            N LS    +  
Sbjct: 124 GNSLSDTFRDQS 135

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 17/88 (19%)

Query: 606 PVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIP------SSLGSLKGLKSLN 659
              I+D I  ++  K  +++         +    +L G IP      ++L +LK  K L 
Sbjct: 4   ATTIKDAIRIFEERKSVVAT---------EAEKVELHGMIPPIEKMDATLSTLKACKHLA 54

Query: 660 LSYNQLQGNIPSTFGNLEILETLDLSHN 687
           LS N ++  I S    +E L  L L  N
Sbjct: 55  LSTNNIE-KISS-LSGMENLRILSLGRN 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	757
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.87

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.3e-40  Score=341.32  Aligned_cols=274  Identities=30%  Similarity=0.479  Sum_probs=212.9

Q ss_pred             CCcHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCCCCCCCcc--cceeeeCCCCCcccEEEEEcCCCCCCCCccee-
Q 041016           24 CCPEDQKAALLEFKSLVLGDLADNSSADAMLGGLETWNSSSDCCR--WEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTS-  100 (757)
Q Consensus        24 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~-  100 (757)
                      -|.++||+||++||+++.   + +       ..+++|..++|||.  |.||+|+..+..+||++++|++.     .+.| 
T Consensus         2 ~c~~~e~~aLl~~k~~~~---~-~-------~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~-----~l~g~   65 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG---N-P-------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-----NLPKP   65 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT---C-C-------GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-----CCSSC
T ss_pred             CCCHHHHHHHHHHHHHCC---C-C-------CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC-----CCCCC
Confidence            489999999999999987   3 2       24789998889994  99999998656679999999986     5555 


Q ss_pred             -eccccccCCCCCCEEeCCC-CCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCccccc
Q 041016          101 -VVLAPIFRIRSLMTLDLSY-NSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSR  178 (757)
Q Consensus       101 -~~~~~l~~l~~L~~L~Ls~-n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~  178 (757)
                       .+|+.++++++|++|+|++ |+++|.+| ..|+++++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|..
T Consensus        66 ~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP-~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~  144 (313)
T d1ogqa_          66 YPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             EECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred             CCCChHHhcCccccccccccccccccccc-cccccccccchhhhccccccccccccccchhhhcccccccccccccCchh
Confidence             5677888888888888875 77887888 67888888888888888888777777788888888888888877777777


Q ss_pred             ccCCCCCCEEEccCccCCccCchhccCCCCC-CEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCC
Q 041016          179 VAGLKNLKQLILDDNLIQGQIPAEIGNLTNL-HKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANI  257 (757)
Q Consensus       179 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  257 (757)
                      +.++++|+++++++|.+.+.+|..+..+.++ +.+++++|++++..|..+.++..+ .+++..+...+.+|..+..++++
T Consensus       145 l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l  223 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNT  223 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCC
T ss_pred             hccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence            8888888888888888877777777777665 777788888877777777665444 67777777777777777777777


Q ss_pred             CEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          258 TILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       258 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      +.+++++|.+.+.++ .+..+++|+.|++++|+++|.+|.++.++++|++|+|++|+++
T Consensus       224 ~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             SEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            777777777775543 4666777777777777777777777777777777777776665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.6e-31  Score=275.69  Aligned_cols=257  Identities=33%  Similarity=0.512  Sum_probs=202.8

Q ss_pred             ccEEEccCCcccc--cChHhhhccCCCCEEEccC-CcccccCC-CCCCCCcccEEECcCCccccCCCchhhhcccEEEcc
Q 041016          424 VMVLMLSSNNFSG--HVPKSISNIYRLLVLDLSN-NSFSGEFP-AFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLS  499 (757)
Q Consensus       424 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~ls~-n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~  499 (757)
                      ++.|+|++|.+.+  .+|..+.++++|++|++++ |.++|.+| .++++++|++|++++|++                  
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l------------------  113 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV------------------  113 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC------------------
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccc------------------
Confidence            4444444444443  2344455555555555543 44444444 344444444444433333                  


Q ss_pred             CCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCC-CEEECcCCccccc
Q 041016          500 ENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSL-QILDLSNNNLLGK  578 (757)
Q Consensus       500 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L-~~L~ls~n~l~~~  578 (757)
                          .+..+..+..+..|+++++++|.+.+.+|..+..++.|+++++++|.+.+.+|..+..+..+ +.+++++|++++.
T Consensus       114 ----~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         114 ----SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             ----EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             ----cccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccc
Confidence                33455567778889999999999988899999999999999999999999999888888776 8899999999998


Q ss_pred             CCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEE
Q 041016          579 IPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSL  658 (757)
Q Consensus       579 ~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L  658 (757)
                      .|..+.++..                                           ..++++++...+.+|..++.+++|+.+
T Consensus       190 ~~~~~~~l~~-------------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l  226 (313)
T d1ogqa_         190 IPPTFANLNL-------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             CCGGGGGCCC-------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             cccccccccc-------------------------------------------ccccccccccccccccccccccccccc
Confidence            8877765432                                           468999999999999999999999999


Q ss_pred             eCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCCCCCCCCCCCCccccCCCCC
Q 041016          659 NLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPESPQMDRQIDPVIYANNSGL  738 (757)
Q Consensus       659 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~gn~~l  738 (757)
                      ++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.|.++++|++|||++|+|+|.||+.+.+.++.... |.||+.+
T Consensus       227 ~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~-l~~N~~l  304 (313)
T d1ogqa_         227 HLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCL  304 (313)
T ss_dssp             ECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG-TCSSSEE
T ss_pred             cccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHH-hCCCccc
Confidence            999999998766 58889999999999999999999999999999999999999999999998888998888 9999999


Q ss_pred             CCCCCCCCCC
Q 041016          739 CGMQIQVVCP  748 (757)
Q Consensus       739 c~~~l~~~c~  748 (757)
                      ||.|++ .|+
T Consensus       305 ~g~plp-~c~  313 (313)
T d1ogqa_         305 CGSPLP-ACT  313 (313)
T ss_dssp             ESTTSS-CCC
T ss_pred             cCCCCC-CCC
Confidence            999984 774

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.7e-26  Score=245.35  Aligned_cols=343  Identities=27%  Similarity=0.320  Sum_probs=208.2

Q ss_pred             cCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcE
Q 041016          228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKS  307 (757)
Q Consensus       228 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  307 (757)
                      ..+.+|++|+++++.++..  +.+..+++|++|++++|++++..  .++++++|++|++++|.+.+..+  +..+++|+.
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc--ccccccccc
Confidence            3455666677766666532  34556666666666666666432  25566666666666666553221  445555555


Q ss_pred             EEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCC
Q 041016          308 LYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLT  387 (757)
Q Consensus       308 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~  387 (757)
                      |+++++.++                        +..  .......+.......|.+....+.                  
T Consensus       115 L~~~~~~~~------------------------~~~--~~~~~~~~~~~~~~~~~l~~~~~~------------------  150 (384)
T d2omza2         115 LTLFNNQIT------------------------DID--PLKNLTNLNRLELSSNTISDISAL------------------  150 (384)
T ss_dssp             EECCSSCCC------------------------CCG--GGTTCTTCSEEEEEEEEECCCGGG------------------
T ss_pred             ccccccccc------------------------ccc--cccccccccccccccccccccccc------------------
Confidence            555554443                        111  122223344444444443322111                  


Q ss_pred             CCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCC
Q 041016          388 GSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGS  467 (757)
Q Consensus       388 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~  467 (757)
                           ...............     .....+...+.........|...  ....+..+++++.+++++|.++        
T Consensus       151 -----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~--------  210 (384)
T d2omza2         151 -----SGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQIS--------  210 (384)
T ss_dssp             -----TTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCC--------
T ss_pred             -----ccccccccccccccc-----chhhhhccccccccccccccccc--cccccccccccceeeccCCccC--------
Confidence                 000001111111111     11112333344444444444332  2233445555555555555544        


Q ss_pred             CCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEcc
Q 041016          468 DSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLR  547 (757)
Q Consensus       468 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  547 (757)
                                     +..|......++.+++++|.++..  ..+..+++|+.|++++|.+++..+  +..+++|++|+++
T Consensus       211 ---------------~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~  271 (384)
T d2omza2         211 ---------------DITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG  271 (384)
T ss_dssp             ---------------CCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             ---------------CCCcccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--ccccccCCEeecc
Confidence                           333333333355555555555432  357788999999999999886544  7788999999999


Q ss_pred             CCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccccc
Q 041016          548 NTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKS  627 (757)
Q Consensus       548 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  627 (757)
                      +|++.+..  .+..++.++.+++++|.+.+.  ..+..                                          
T Consensus       272 ~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~------------------------------------------  305 (384)
T d2omza2         272 ANQISNIS--PLAGLTALTNLELNENQLEDI--SPISN------------------------------------------  305 (384)
T ss_dssp             SSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGG------------------------------------------
T ss_pred             CcccCCCC--ccccccccccccccccccccc--cccch------------------------------------------
Confidence            99988544  377888999999999988642  12222                                          


Q ss_pred             ccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEe
Q 041016          628 LAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLY  707 (757)
Q Consensus       628 ~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  707 (757)
                      ++.++.|++++|++++..  .+..+++|++|++++|++++. + .|+++++|++|++++|++++..|  +.++++|++|+
T Consensus       306 ~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         306 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred             hcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEee
Confidence            344588999999998754  388999999999999999864 3 68999999999999999998765  88999999999


Q ss_pred             CCCC
Q 041016          708 LSNN  711 (757)
Q Consensus       708 ls~N  711 (757)
                      |++|
T Consensus       380 L~~N  383 (384)
T d2omza2         380 LNDQ  383 (384)
T ss_dssp             CCCE
T ss_pred             CCCC
Confidence            9987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.3e-26  Score=244.39  Aligned_cols=191  Identities=25%  Similarity=0.300  Sum_probs=114.9

Q ss_pred             ccCCCCCCEEEccCCcccCcccccccCccccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccE
Q 041016          347 LSTQTELTFLDLSENELEGTYPQWLSELNLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMV  426 (757)
Q Consensus       347 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~  426 (757)
                      +..+++++.+++++|.+++..|. .....++++++++|+++. + +.+..+++|+.+++++|.+++..+  +..+++|++
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~  267 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE  267 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             cccccccceeeccCCccCCCCcc-cccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCE
Confidence            44555566666666555543321 111114444444444332 1 234455666666666666654322  455566666


Q ss_pred             EEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccc
Q 041016          427 LMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQ  506 (757)
Q Consensus       427 L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~  506 (757)
                      |++++|++++..  .+..++.++.++++.|.+.+ ++.+..+++                      ++.+++++|++++.
T Consensus       268 L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~-~~~~~~~~~----------------------l~~L~ls~n~l~~l  322 (384)
T d2omza2         268 LKLGANQISNIS--PLAGLTALTNLELNENQLED-ISPISNLKN----------------------LTYLTLYFNNISDI  322 (384)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC-CGGGGGCTT----------------------CSEEECCSSCCSCC
T ss_pred             eeccCcccCCCC--cccccccccccccccccccc-ccccchhcc----------------------cCeEECCCCCCCCC
Confidence            666666655332  24445555555555555442 223333334                      55555555666554


Q ss_pred             cchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCC
Q 041016          507 LPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNN  573 (757)
Q Consensus       507 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n  573 (757)
                      .  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       323 ~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         323 S--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             c--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            3  37788999999999999884 44 58889999999999999987654  888999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.7e-24  Score=221.67  Aligned_cols=247  Identities=24%  Similarity=0.304  Sum_probs=178.4

Q ss_pred             cccceeeeCCCCCcccEEEEEcCCCCCCCCcceeeccccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCc
Q 041016           67 CRWEMVRCRSRGPSQEVTGLDLNNLFPLDSIVTSVVLAPIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNN  146 (757)
Q Consensus        67 c~w~gv~c~~~~~~~~v~~l~L~~~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~  146 (757)
                      |.|.+|.|+..+                   ++ .+|+.+.  +.+++|+|++|+++ .+|..+|.++++|++|++++|.
T Consensus        10 c~~~~~~C~~~~-------------------L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~   66 (305)
T d1xkua_          10 CHLRVVQCSDLG-------------------LE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK   66 (305)
T ss_dssp             EETTEEECTTSC-------------------CC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSC
T ss_pred             ecCCEEEecCCC-------------------CC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhcccccccccccccc
Confidence            789999998631                   11 2333342  57889999999887 5665678888999999999998


Q ss_pred             CCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccc--cccC
Q 041016          147 LNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS--GGIP  224 (757)
Q Consensus       147 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~  224 (757)
                      +....|..|.++++|++|++++|+++.....   ....++.|++.+|.+.+..+..+.....++.++...|...  ...+
T Consensus        67 ~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~  143 (305)
T d1xkua_          67 ISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN  143 (305)
T ss_dssp             CCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             ccccchhhhhCCCccCEecccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCc
Confidence            8877778888889999999998888754332   2357788888888888766666777777888887776542  3344


Q ss_pred             ccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCC
Q 041016          225 LSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQG  304 (757)
Q Consensus       225 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  304 (757)
                      ..+..+++|+++++++|.++. +|..  .+++|+.|++++|...+..+..+.+++.+++|++++|.+++..+.++..+++
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~  220 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH  220 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             cccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccc
Confidence            566777788888888777763 3333  2567777777777777666677777777777777777777666666677777


Q ss_pred             CcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCcc
Q 041016          305 MKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTY  367 (757)
Q Consensus       305 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  367 (757)
                      |++|+|++|+++                         .+|.++..+++|++|++++|+++...
T Consensus       221 L~~L~L~~N~L~-------------------------~lp~~l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         221 LRELHLNNNKLV-------------------------KVPGGLADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             CCEEECCSSCCS-------------------------SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             ceeeeccccccc-------------------------ccccccccccCCCEEECCCCccCccC
Confidence            777777766665                         45667777888888888888877443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3e-24  Score=219.82  Aligned_cols=272  Identities=23%  Similarity=0.286  Sum_probs=190.6

Q ss_pred             ccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccC
Q 041016          376 LGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSN  455 (757)
Q Consensus       376 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~  455 (757)
                      .+.++-+++.++ .+|..+.  +++++|+|++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            455555555555 4555543  5678888888877765556677777788888888777766677777777777777777


Q ss_pred             CcccccCCCCCCCCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCccc--Ccchh
Q 041016          456 NSFSGEFPAFGSDSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLT--GEFPA  533 (757)
Q Consensus       456 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~  533 (757)
                      |+++. +|                       ..+...+..|.+.+|.+.+..+..+.....++.++...|...  ...+.
T Consensus        89 n~l~~-l~-----------------------~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~  144 (305)
T d1xkua_          89 NQLKE-LP-----------------------EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG  144 (305)
T ss_dssp             SCCSB-CC-----------------------SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred             CccCc-Cc-----------------------cchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcc
Confidence            77653 22                       112222344455555555555555666777777777776433  34455


Q ss_pred             hccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeE
Q 041016          534 FLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLI  613 (757)
Q Consensus       534 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~  613 (757)
                      .+..+++|+++++++|.+.. ++..  .+++|++|++++|..++..+..|.+++.+                        
T Consensus       145 ~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l------------------------  197 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNL------------------------  197 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTC------------------------
T ss_pred             ccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccc------------------------
Confidence            67777888888888887763 3433  25778888888888877777666655444                        


Q ss_pred             eeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCC
Q 041016          614 VNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKI  693 (757)
Q Consensus       614 ~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  693 (757)
                                        +.|++++|.+++..+..+.++++|++|+|++|+++ .+|++|..+++|++|+|++|+|+.+.
T Consensus       198 ------------------~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         198 ------------------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             ------------------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             ------------------cccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccC
Confidence                              77888888888777888888899999999999988 55778888999999999999988764


Q ss_pred             CCCc------cCCCCCCEEeCCCCcce-ecCCCC
Q 041016          694 PQTF------AKLQQLTSLYLSNNKLS-GRIPES  720 (757)
Q Consensus       694 p~~l------~~l~~L~~L~ls~N~l~-g~iP~~  720 (757)
                      ...|      ..+.+|+.|++++|++. ..+|.+
T Consensus       259 ~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~  292 (305)
T d1xkua_         259 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS  292 (305)
T ss_dssp             TTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred             hhhccCcchhcccCCCCEEECCCCcCccCcCCHh
Confidence            4443      45688999999999985 556543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.2e-24  Score=213.58  Aligned_cols=206  Identities=27%  Similarity=0.267  Sum_probs=132.2

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEcc-CCcCCCcccccccCCCCCCEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLS-ANAIEGKLSSRVAGLKNLKQL  188 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L  188 (757)
                      +.+++|+|++|+|+ .+|..+|.++++|++|++++|.+....+..+..+..++.++.. .+.+....+..|+++++|++|
T Consensus        32 ~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            45677777777776 4554567777777777777777766666666666666666654 445555556666666667777


Q ss_pred             EccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCC
Q 041016          189 ILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALT  268 (757)
Q Consensus       189 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  268 (757)
                      ++++|.+....+..+...++|+.+++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.+++++|+++
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            66666666555555666666666666666666555556666666666666666666655566666666666666666666


Q ss_pred             CccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          269 GAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       269 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      +..|..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            666666666666666666666666555555656666666666665544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-23  Score=210.31  Aligned_cols=238  Identities=24%  Similarity=0.207  Sum_probs=152.8

Q ss_pred             CCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEcc-CccCCccCchhccCCCCCCEEE
Q 041016          135 TRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILD-DNLIQGQIPAEIGNLTNLHKLS  213 (757)
Q Consensus       135 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~  213 (757)
                      +.+++|+|++|.|+...+.+|.++++|++|++++|.+..+.+..+.++..++.++.. .+.++...+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            456777777777764444566777777777777777776666666777777776654 3445555566677777777777


Q ss_pred             ccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccc
Q 041016          214 LRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG  293 (757)
Q Consensus       214 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  293 (757)
                      +++|.+....+..+....+|+.+++++|.+++..+..|..+++|++|++++|++++..+..|.++++|+++++++|++++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccc
Confidence            77777665555566666777777777777766555666667777777777777766666667777777777777777776


Q ss_pred             ccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcch-hccCCCCCCEEEccCCcccCccccccc
Q 041016          294 EISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPL-WLSTQTELTFLDLSENELEGTYPQWLS  372 (757)
Q Consensus       294 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~  372 (757)
                      ..|..|..+++|++|++++|.+.......+.....|++|++++|.+....+. |+.  ..++.+....+++....|..+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~--~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW--AWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHH--HHHHHCCSEECCCBEEESGGGT
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHH--HHHHhCcCCCCceEeCCchHHc
Confidence            6667777777777777777777766666666666677777777666543221 110  1122333344455545555554


Q ss_pred             Cc
Q 041016          373 EL  374 (757)
Q Consensus       373 ~~  374 (757)
                      +.
T Consensus       270 g~  271 (284)
T d1ozna_         270 GR  271 (284)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.6e-22  Score=200.34  Aligned_cols=201  Identities=25%  Similarity=0.259  Sum_probs=171.7

Q ss_pred             CCcccEEECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEcc
Q 041016          468 DSLVGHVDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLR  547 (757)
Q Consensus       468 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  547 (757)
                      ...+.+++.+++.++. +|..++..+++|+|++|++++..+..|.++++|++|+|++|+++. ++ .++.+++|++|+++
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls   85 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLS   85 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECC
T ss_pred             cCCCeEEEccCCCCCe-eCcCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccccc
Confidence            3445566777777774 566666678899999999988877899999999999999999984 44 35789999999999


Q ss_pred             CCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCcccccccc
Q 041016          548 NTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKS  627 (757)
Q Consensus       548 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  627 (757)
                      +|++.+ .+..+..+++|+.|++++|.+.+..+..+..+.                                        
T Consensus        86 ~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~----------------------------------------  124 (266)
T d1p9ag_          86 HNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG----------------------------------------  124 (266)
T ss_dssp             SSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT----------------------------------------
T ss_pred             cccccc-cccccccccccccccccccccceeecccccccc----------------------------------------
Confidence            999984 567889999999999999998866555554443                                        


Q ss_pred             ccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEe
Q 041016          628 LAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLY  707 (757)
Q Consensus       628 ~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  707 (757)
                        .++.|++++|.++...+..+..++.|++|++++|++++..++.|..+++|++|+|++|+|+ .+|+.+..+++|+.|+
T Consensus       125 --~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~  201 (266)
T d1p9ag_         125 --ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF  201 (266)
T ss_dssp             --TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred             --ccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEE
Confidence              4488999999999888888899999999999999999999999999999999999999999 6788888999999999


Q ss_pred             CCCCccee
Q 041016          708 LSNNKLSG  715 (757)
Q Consensus       708 ls~N~l~g  715 (757)
                      |++|++..
T Consensus       202 L~~Np~~C  209 (266)
T d1p9ag_         202 LHGNPWLC  209 (266)
T ss_dssp             CCSCCBCC
T ss_pred             ecCCCCCC
Confidence            99999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.4e-21  Score=193.30  Aligned_cols=198  Identities=24%  Similarity=0.238  Sum_probs=124.2

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016          111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL  190 (757)
Q Consensus       111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  190 (757)
                      .+.+.|.++++++ .+| ..+.  +++++|+|++|.+++..+.+|.++++|++|+|++|+++.. + .++.+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP-~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeC-cCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence            3444555555665 455 2222  3566666666666644445566666666666666666533 2 2455666666666


Q ss_pred             cCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCc
Q 041016          191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGA  270 (757)
Q Consensus       191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  270 (757)
                      ++|++++ .+..+..+++|++|++++|.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|++++.
T Consensus        85 s~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            6666653 345566666666777666666655556666666677777777666655555566666777777777777666


Q ss_pred             cchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       271 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      .+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            6666666777777777777766 56666666677777777777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3e-20  Score=201.56  Aligned_cols=116  Identities=23%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             CcccEEECcCCccccCCCchhhh------cccEEEccCCccccc----cchhcc-CCCCCCEEeCcCCcccCc----chh
Q 041016          469 SLVGHVDISSNRFSGEVPSSFGV------TILMLSLSENKFSGQ----LPQNLS-NLSLLQHLDLHDNNLTGE----FPA  533 (757)
Q Consensus       469 ~~L~~L~l~~n~l~~~~~~~~~~------~l~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~Ls~n~l~~~----~~~  533 (757)
                      ..|+.+++++|.++......+..      .++.|++++|.++..    ++..+. ..+.|++|+|++|.+++.    ++.
T Consensus       312 ~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  391 (460)
T d1z7xw1         312 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  391 (460)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHH
Confidence            45556666666555443332221      267777777777543    233333 467799999999998743    445


Q ss_pred             hccCCCCCCEEEccCCcCccccC----cccC-CCCCCCEEECcCCcccccCCcccc
Q 041016          534 FLSQLSSLQVLNLRNTALEGSIT----DGLS-NLTSLQILDLSNNNLLGKIPSSFG  584 (757)
Q Consensus       534 ~l~~l~~L~~L~Ls~n~l~~~~~----~~l~-~l~~L~~L~ls~n~l~~~~p~~~~  584 (757)
                      .+..+++|++|+|++|+++....    +.+. +...|+.|++.+|.+.......+.
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~  447 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ  447 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred             HHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHH
Confidence            56678899999999999875333    2232 345799999999988765554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=3.2e-16  Score=162.95  Aligned_cols=297  Identities=25%  Similarity=0.279  Sum_probs=162.4

Q ss_pred             CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016          111 SLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL  190 (757)
Q Consensus       111 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  190 (757)
                      ++++|||+++.++ .+| +   .+++|++|+|++|+++ .+|+.+   .+|+.|++++|+++.. +. +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp-~---~~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLP-E---LPPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKAL-SD-L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCC-S---CCTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSCC-CS-C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCC-C---CCCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccchh-hh-h--ccccccccc
Confidence            5677788877776 566 3   2467788888888887 666543   4677778888777633 11 1  135788888


Q ss_pred             cCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCc
Q 041016          191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGA  270 (757)
Q Consensus       191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  270 (757)
                      ++|.+. .+|. ++.+++|++|+++++.+... +.   ....+..+.+..+...  ....+..++.++.+.+++|.....
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~  177 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL  177 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC
T ss_pred             cccccc-cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceeccccccccccc
Confidence            888777 3443 56778888888887777632 22   2356667777665543  234566777778888877766532


Q ss_pred             cchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCC
Q 041016          271 IPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQ  350 (757)
Q Consensus       271 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  350 (757)
                       +.   .....+.+...++.+. .++ .+..++.|+.+++++|......    .....+..+.+.++.+... +   ...
T Consensus       178 -~~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~~----~~~~~l~~~~~~~~~~~~~-~---~~~  243 (353)
T d1jl5a_         178 -PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDL-P---ELP  243 (353)
T ss_dssp             -CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCC----SCCTTCCEEECCSSCCSCC-C---CCC
T ss_pred             -cc---cccccccccccccccc-ccc-cccccccccccccccccccccc----ccccccccccccccccccc-c---ccc
Confidence             11   1123445555554443 222 2456677777777777654221    1222345555555544321 1   123


Q ss_pred             CCCCEEEccCCcccCcccccccCc--cccEEEcCCCcCCCCCCCCccCCCCCCEEeCcCccccccCCcccCCCCCccEEE
Q 041016          351 TELTFLDLSENELEGTYPQWLSEL--NLGTVILSDNMLTGSLPPPLFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLM  428 (757)
Q Consensus       351 ~~L~~L~l~~n~l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~  428 (757)
                      +.+...++..+.+.+.     ..+  .....++..+.+.+.    ...+++|++|++++|+++ .+|.   .+++|+.|+
T Consensus       244 ~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~  310 (353)
T d1jl5a_         244 QSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLI  310 (353)
T ss_dssp             TTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEE
T ss_pred             cccccccccccccccc-----ccccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEE
Confidence            3455555555444321     111  123334444433311    122355666666666655 2332   234566666


Q ss_pred             ccCCcccccChHhhhccCCCCEEEccCCccc
Q 041016          429 LSSNNFSGHVPKSISNIYRLLVLDLSNNSFS  459 (757)
Q Consensus       429 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  459 (757)
                      +++|+++ .+|.   .+.+|++|++++|+++
T Consensus       311 L~~N~L~-~l~~---~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         311 ASFNHLA-EVPE---LPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred             CCCCcCC-cccc---ccCCCCEEECcCCcCC
Confidence            6666655 2332   1335555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.2e-20  Score=202.55  Aligned_cols=86  Identities=24%  Similarity=0.200  Sum_probs=48.9

Q ss_pred             ccCeEECcCCCCCCc----CCcccc-CCCCCCEEeCCCCCCCcc----CCcchhCCCCCCEEeCCCCcCccCCCCCc---
Q 041016          630 IYSLMDLSNNQLSGE----IPSSLG-SLKGLKSLNLSYNQLQGN----IPSTFGNLEILETLDLSHNSLSGKIPQTF---  697 (757)
Q Consensus       630 ~l~~L~Ls~n~l~~~----~p~~l~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---  697 (757)
                      .|+.|||++|++++.    ++..+. ..+.|++|+|++|++++.    +++.+..+++|++|+|++|+++......+   
T Consensus       341 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~  420 (460)
T d1z7xw1         341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES  420 (460)
T ss_dssp             SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred             chhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHH
Confidence            446666666666532    222232 345677777777777642    33445566777777777777664322222   


Q ss_pred             -c-CCCCCCEEeCCCCccee
Q 041016          698 -A-KLQQLTSLYLSNNKLSG  715 (757)
Q Consensus       698 -~-~l~~L~~L~ls~N~l~g  715 (757)
                       . +...|++|++.+|++..
T Consensus       421 l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         421 VRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             HTSTTCCCCEEECTTCCCCH
T ss_pred             HHhCCCccCEEECCCCCCCH
Confidence             1 23457777777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=3.8e-16  Score=162.40  Aligned_cols=149  Identities=23%  Similarity=0.258  Sum_probs=85.7

Q ss_pred             ccCCCCCCEEeCcCccccccCCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCcccccCCCCCCCCcccE
Q 041016          394 LFESRNLSVLVLSRNNFSGELPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNSFSGEFPAFGSDSLVGH  473 (757)
Q Consensus       394 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~  473 (757)
                      ...++.|+.+++++|.... .+.   ...++..+.+.++.+.... .   ....+...++..+.+.+...          
T Consensus       200 ~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~l~~----------  261 (353)
T d1jl5a_         200 LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSENIFSGLSE----------  261 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSEESC----------
T ss_pred             ccccccccccccccccccc-ccc---ccccccccccccccccccc-c---cccccccccccccccccccc----------
Confidence            3456677777777776542 222   2345666666666554221 1   12334444444443321100          


Q ss_pred             EECcCCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcc
Q 041016          474 VDISSNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEG  553 (757)
Q Consensus       474 L~l~~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  553 (757)
                                     ........++..+.+.+.    ...+++|++|++++|+++ .+|.   .+++|++|++++|+++ 
T Consensus       262 ---------------l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~-  317 (353)
T d1jl5a_         262 ---------------LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-  317 (353)
T ss_dssp             ---------------CCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-
T ss_pred             ---------------ccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCC-
Confidence                           011123344455544432    234678999999999888 5554   3578999999999987 


Q ss_pred             ccCcccCCCCCCCEEECcCCcccccCCcccccccc
Q 041016          554 SITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQG  588 (757)
Q Consensus       554 ~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~  588 (757)
                      .+|+.   +++|++|++++|+++ .+|.....++.
T Consensus       318 ~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~  348 (353)
T d1jl5a_         318 EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVED  348 (353)
T ss_dssp             CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCE
T ss_pred             ccccc---cCCCCEEECcCCcCC-CCCccccccCe
Confidence            45543   467899999999986 55654444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=3.4e-17  Score=158.69  Aligned_cols=185  Identities=23%  Similarity=0.327  Sum_probs=99.8

Q ss_pred             EeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCcc
Q 041016          115 LDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNL  194 (757)
Q Consensus       115 L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  194 (757)
                      ++++.+.+++.+.   ++.+.+|++|++.+|.++. + +.+.++++|++|++++|.+.+..+  +.++++|+++++++|.
T Consensus        24 ~~l~~~~~~d~~~---~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          24 IAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP   96 (227)
T ss_dssp             HHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred             HHhCCCCcCCcCC---HHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccc
Confidence            3444455543322   3445566666666666652 3 235566666666666666554332  5566666666666665


Q ss_pred             CCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchh
Q 041016          195 IQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQS  274 (757)
Q Consensus       195 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  274 (757)
                      ++. + ..+.++++|++++++++...+.  ..+...+.++.+.++.+.+...  ..+..+++|++|++++|.+.+..  .
T Consensus        97 ~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~  168 (227)
T d1h6ua2          97 LKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--P  168 (227)
T ss_dssp             CSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--G
T ss_pred             ccc-c-cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccch--h
Confidence            542 2 2355666666666666655432  2244455666666666555432  23455566666666666555322  2


Q ss_pred             hhcCCCCCEEEccCCccccccchhhhccCCCcEEEccCCCCc
Q 041016          275 IRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGGNKLK  316 (757)
Q Consensus       275 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  316 (757)
                      ++++++|++|++++|++++. + .+..+++|++|++++|+++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCC
T ss_pred             hcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCC
Confidence            55566666666666665532 2 2555566666666665554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=7.9e-17  Score=156.06  Aligned_cols=191  Identities=25%  Similarity=0.351  Sum_probs=158.7

Q ss_pred             cccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCC
Q 041016          105 PIFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKN  184 (757)
Q Consensus       105 ~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  184 (757)
                      .+..+.+|+.|++.+|.++ .++  .+.++++|++|++++|.+++..|  +.++++|+++++++|.++..  ..+.++++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~-~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~  108 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQS  108 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred             CHHHcCCcCEEECCCCCCC-cch--hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--cccccccc
Confidence            3456788999999999997 453  48899999999999999986543  89999999999999988753  45889999


Q ss_pred             CCEEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccC
Q 041016          185 LKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSN  264 (757)
Q Consensus       185 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~  264 (757)
                      |+.++++++...+.  ..+...+.++.+.++.+.+....  .+.++++|++|++++|.++..  ..+.++++|++|++++
T Consensus       109 L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~  182 (227)
T d1h6ua2         109 IKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD  182 (227)
T ss_dssp             CCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred             cccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecccCC
Confidence            99999999987643  34777889999999999887433  477889999999999998754  3488999999999999


Q ss_pred             CCCCCccchhhhcCCCCCEEEccCCccccccchhhhccCCCcEEEccC
Q 041016          265 NALTGAIPQSIRNMTKLVTLRLDSNVLSGEISTWLFDLQGMKSLYLGG  312 (757)
Q Consensus       265 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  312 (757)
                      |++++. + .++++++|++|++++|++++..+  +.++++|+.|++++
T Consensus       183 n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         183 NKISDI-S-PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             SCCCCC-G-GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CccCCC-h-hhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            999864 3 48899999999999999986433  78999999999863

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=6.8e-18  Score=158.77  Aligned_cols=112  Identities=29%  Similarity=0.346  Sum_probs=86.8

Q ss_pred             CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEE
Q 041016          110 RSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLI  189 (757)
Q Consensus       110 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  189 (757)
                      +++++|+|++|.|++.++...|.++++|++|+|++|.+....+..+..+++|++|+|++|+++.+.+.+|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            57788888888887666657778888888888888888877777777888888888888888877777777777788888


Q ss_pred             ccCccCCccCchhccCCCCCCEEEcccccccc
Q 041016          190 LDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSG  221 (757)
Q Consensus       190 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  221 (757)
                      |++|++++..+++|..+++|++|+|++|.+..
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCccccccCHHHhcCCccccccccccccccc
Confidence            88777777667777777777777777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.3e-16  Score=152.08  Aligned_cols=164  Identities=27%  Similarity=0.384  Sum_probs=94.8

Q ss_pred             CCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEE
Q 041016          134 LTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLS  213 (757)
Q Consensus       134 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  213 (757)
                      +.+|++|++++|.++.. + .+..+++|++|++++|++++..  .++.+++|++|++++|++++ +| .+..+++|++|+
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-cccccccccccc
Confidence            44566666666665532 2 2555666666666666665432  24556666666666666653 22 356666666666


Q ss_pred             ccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCcccc
Q 041016          214 LRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSG  293 (757)
Q Consensus       214 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  293 (757)
                      +++|.+.. + ..+..+++++.+++++|.+++.  ..+..+++|+++++++|++++..  .++++++|++|++++|+++.
T Consensus       119 l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc-c-cccccccccccccccccccccc--ccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC
Confidence            66666542 2 2455666666666666666532  34555666666666666666432  25666666666666666653


Q ss_pred             ccchhhhccCCCcEEEcc
Q 041016          294 EISTWLFDLQGMKSLYLG  311 (757)
Q Consensus       294 ~~~~~l~~l~~L~~L~L~  311 (757)
                       ++ .+.++++|++|+++
T Consensus       193 -l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEcc
Confidence             33 36666666666665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2e-16  Score=150.73  Aligned_cols=177  Identities=24%  Similarity=0.315  Sum_probs=134.5

Q ss_pred             CCccccCCCchhhhcccEEEccCCccccccchhccCCCCCCEEeCcCCcccCcchhhccCCCCCCEEEccCCcCccccCc
Q 041016          478 SNRFSGEVPSSFGVTILMLSLSENKFSGQLPQNLSNLSLLQHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSITD  557 (757)
Q Consensus       478 ~n~l~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  557 (757)
                      .+.+++.++..-...++.|++++|.++...  .+..+++|++|++++|++++..+  ++.+++|++|++++|++++ ++ 
T Consensus        33 ~~~~~~~~~~~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~-l~-  106 (210)
T d1h6ta2          33 KKSVTDAVTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-  106 (210)
T ss_dssp             CSCTTSEECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-
T ss_pred             cCccCCccCHHHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccc-cc-
Confidence            334444433333334677777777776542  47889999999999999986443  6789999999999999985 33 


Q ss_pred             ccCCCCCCCEEECcCCcccccCCcccccccccccCCCCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECc
Q 041016          558 GLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLS  637 (757)
Q Consensus       558 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls  637 (757)
                      .+..+++|+.|++++|.+...  ..+..                                          ++.++.++++
T Consensus       107 ~l~~l~~L~~L~l~~~~~~~~--~~l~~------------------------------------------l~~l~~l~~~  142 (210)
T d1h6ta2         107 SLKDLKKLKSLSLEHNGISDI--NGLVH------------------------------------------LPQLESLYLG  142 (210)
T ss_dssp             GGTTCTTCCEEECTTSCCCCC--GGGGG------------------------------------------CTTCCEEECC
T ss_pred             ccccccccccccccccccccc--ccccc------------------------------------------cccccccccc
Confidence            588899999999999987531  22332                                          3445889999


Q ss_pred             CCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCC
Q 041016          638 NNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSN  710 (757)
Q Consensus       638 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  710 (757)
                      +|.+++  +..+..+++|+++++++|++++..  .+.++++|++|++++|+++. +| .+..+++|++|+|++
T Consensus       143 ~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         143 NNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            999874  345778999999999999998653  38899999999999999985 44 589999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.3e-16  Score=148.98  Aligned_cols=162  Identities=28%  Similarity=0.405  Sum_probs=88.2

Q ss_pred             CCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEE
Q 041016          133 NLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKL  212 (757)
Q Consensus       133 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  212 (757)
                      .++++++|++++|.++. + +.+..+++|++|++++|++++..+  ++++++|++|++++|.+.. ++ .++++++|++|
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccc-cc-ccccccccccc
Confidence            34555556666655552 2 235555566666666665554332  5555666666666655542 22 35556666666


Q ss_pred             EccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccc
Q 041016          213 SLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLS  292 (757)
Q Consensus       213 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  292 (757)
                      ++++|.....  ..+..+++|+.|++++|++...  +.+..+++|+.|++.+|++++.  +.++++++|++|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence            6666655432  2355566666666666665422  2455566666666666666543  23556666666666666655


Q ss_pred             cccchhhhccCCCcEE
Q 041016          293 GEISTWLFDLQGMKSL  308 (757)
Q Consensus       293 ~~~~~~l~~l~~L~~L  308 (757)
                      + ++ .+..+++|++|
T Consensus       186 ~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         186 D-IS-VLAKLTNLESL  199 (199)
T ss_dssp             C-CG-GGGGCTTCSEE
T ss_pred             C-Cc-cccCCCCCCcC
Confidence            3 22 35556666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-16  Score=156.97  Aligned_cols=183  Identities=17%  Similarity=0.099  Sum_probs=79.2

Q ss_pred             CCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCc-ccccccCCCCCCEEEccC-ccCCccCchhccCCCCCCEEE
Q 041016          136 RLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGK-LSSRVAGLKNLKQLILDD-NLIQGQIPAEIGNLTNLHKLS  213 (757)
Q Consensus       136 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~  213 (757)
                      ++++|++++|.++...+.+|.++++|++|++++|.+... .+..|.++++++++.+.. |.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            444555555544422223344455555555555544332 223344455555554432 334444444455555555555


Q ss_pred             ccccccccccCc-cccCCCCCCEEEccCCcCcccCcccccCCC-CCCEEEccCCCCCCccchhhhcCCCCCEE-EccCCc
Q 041016          214 LRQNKFSGGIPL-SLLQLRKLETLDLQRNSLSGEIPEDIGTLA-NITILALSNNALTGAIPQSIRNMTKLVTL-RLDSNV  290 (757)
Q Consensus       214 L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L-~L~~n~  290 (757)
                      +++|.+....+. .+..+..+..+...++.+....+..+..++ .++.|++++|+++...+.. .+..+++++ .+.+|.
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~-~~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCA-FNGTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTT-TTTCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccc-ccchhhhccccccccc
Confidence            555554422111 122233333333444444433333333332 4555555555555322222 222333333 234444


Q ss_pred             cccccchhhhccCCCcEEEccCCCCcCCC
Q 041016          291 LSGEISTWLFDLQGMKSLYLGGNKLKWND  319 (757)
Q Consensus       291 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  319 (757)
                      ++...+..|.++++|++|++++|+++.++
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccC
Confidence            44333333455555555555555555333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.8e-17  Score=157.95  Aligned_cols=216  Identities=17%  Similarity=0.178  Sum_probs=134.9

Q ss_pred             CEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccC-chhccCCCCCCEEEccc
Q 041016          138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQI-PAEIGNLTNLHKLSLRQ  216 (757)
Q Consensus       138 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~  216 (757)
                      +.++.++..++ .+|..+.  +++++|++++|+++.+.+..|.++++|++|++++|.+...+ +..|.++++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56777777777 6666553  57899999999988777777888889999999888876543 45678888888888764


Q ss_pred             -cccccccCccccCCCCCCEEEccCCcCcccCcc-cccCCCCCCEEEccCCCCCCccchhhhcCC-CCCEEEccCCcccc
Q 041016          217 -NKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPE-DIGTLANITILALSNNALTGAIPQSIRNMT-KLVTLRLDSNVLSG  293 (757)
Q Consensus       217 -n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~  293 (757)
                       |.+....+..|.++++|+++++++|.+....+. .+..+..+..+...++.+....+..+..++ .++.+++++|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             566666677788888888888888877643221 233444555555555566544445555443 56666666666653


Q ss_pred             ccchhhhccCCCcEE-EccCCCCcCCCcccccCCcccceeecCCccCccCcchhccCCCCCCEEEccCCcccCccccccc
Q 041016          294 EISTWLFDLQGMKSL-YLGGNKLKWNDNVSIVPKCMLTELSLRSCSVRGSIPLWLSTQTELTFLDLSENELEGTYPQWLS  372 (757)
Q Consensus       294 ~~~~~l~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~  372 (757)
                      ..+. .....+++++ ++++|.++                        ...+..|.++++|++|++++|+++...+..+.
T Consensus       168 i~~~-~~~~~~l~~~~~l~~n~l~------------------------~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         168 IHNC-AFNGTQLDELNLSDNNNLE------------------------ELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             ECTT-TTTTCCEEEEECTTCTTCC------------------------CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             cccc-cccchhhhccccccccccc------------------------cccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence            3322 2333343333 33444444                        33333456666677777766666644444444


Q ss_pred             Ccc-ccEEEc
Q 041016          373 ELN-LGTVIL  381 (757)
Q Consensus       373 ~~~-L~~L~l  381 (757)
                      .+. |+.+++
T Consensus       223 ~l~~L~~l~~  232 (242)
T d1xwdc1         223 NLKKLRARST  232 (242)
T ss_dssp             TCCEEESSSE
T ss_pred             CCcccccCcC
Confidence            443 444333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.2e-16  Score=147.18  Aligned_cols=163  Identities=28%  Similarity=0.389  Sum_probs=135.9

Q ss_pred             cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCC
Q 041016          107 FRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLK  186 (757)
Q Consensus       107 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  186 (757)
                      ..++++++|++++|.++ .+  ..++.+++|++|++++|.+++..|  ++++++|++|++++|.+....  .+.++++|+
T Consensus        37 ~~l~~l~~L~l~~~~i~-~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIK-SI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCC-CC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCS
T ss_pred             HHhcCCCEEECCCCCCC-Cc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccc
Confidence            35678899999999987 44  347889999999999999985433  899999999999999887543  488999999


Q ss_pred             EEEccCccCCccCchhccCCCCCCEEEccccccccccCccccCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCC
Q 041016          187 QLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFSGGIPLSLLQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNA  266 (757)
Q Consensus       187 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~  266 (757)
                      .|++++|.+...  ..+..+++|++|++++|++.. + ..+..+++|++|++.+|++++.  ..++++++|++|++++|+
T Consensus       110 ~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             cccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCC
Confidence            999999988743  458889999999999999873 3 3588899999999999999864  348899999999999999


Q ss_pred             CCCccchhhhcCCCCCEE
Q 041016          267 LTGAIPQSIRNMTKLVTL  284 (757)
Q Consensus       267 l~~~~~~~l~~l~~L~~L  284 (757)
                      +++.  +.++++++|++|
T Consensus       184 i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         184 VSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCCC--GGGGGCTTCSEE
T ss_pred             CCCC--ccccCCCCCCcC
Confidence            9853  358889999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=5.2e-17  Score=152.59  Aligned_cols=156  Identities=23%  Similarity=0.279  Sum_probs=93.2

Q ss_pred             CEEeCcCCcccCcchhhccCCCCCCEEEccCCcCcccc-CcccCCCCCCCEEECcCCcccccCCcccccccccccCCCCC
Q 041016          518 QHLDLHDNNLTGEFPAFLSQLSSLQVLNLRNTALEGSI-TDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTPSIL  596 (757)
Q Consensus       518 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~~~~  596 (757)
                      +.++.++++++ .+|..+.  +++++|+|++|++++.+ +..|..+++|++|++++|++.+..+..|..++.|       
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L-------   80 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI-------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC-------
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc-------
Confidence            35566666665 4444332  45666666666665433 4455666666666666666665555555544433       


Q ss_pred             CCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCCcchhCC
Q 041016          597 PTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIPSTFGNL  676 (757)
Q Consensus       597 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  676 (757)
                                                         +.|+|++|++++..|..|.++++|++|+|++|+|++..|++|..+
T Consensus        81 -----------------------------------~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l  125 (192)
T d1w8aa_          81 -----------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL  125 (192)
T ss_dssp             -----------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred             -----------------------------------ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCC
Confidence                                               666666666666666666777777777777777776666677777


Q ss_pred             CCCCEEeCCCCcCccCCCCCccCCCCCCEEeCCCCcceecCCC
Q 041016          677 EILETLDLSHNSLSGKIPQTFAKLQQLTSLYLSNNKLSGRIPE  719 (757)
Q Consensus       677 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~iP~  719 (757)
                      ++|++|+|++|.+....+.. .-...++.+.+..|.+.+..|.
T Consensus       126 ~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_         126 NSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSST
T ss_pred             cccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCCh
Confidence            77777777777665433211 1112345556666666665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-15  Score=151.12  Aligned_cols=58  Identities=24%  Similarity=0.311  Sum_probs=24.9

Q ss_pred             CCCCEEEccCCcCCCc-ccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccc
Q 041016          159 RYLEFLDLSANAIEGK-LSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQ  216 (757)
Q Consensus       159 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  216 (757)
                      .+|++||++++.+... +...+.++++|++|+++++.+++..+..++.+++|++|++++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            3444444444443322 122234444444444444444444444444444444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.6e-15  Score=149.15  Aligned_cols=176  Identities=23%  Similarity=0.223  Sum_probs=91.4

Q ss_pred             CCCCEEeCcCcccccc-CCcccCCCCCccEEEccCCcccccChHhhhccCCCCEEEccCCc-cccc-CC-CCCCCCcccE
Q 041016          398 RNLSVLVLSRNNFSGE-LPETIGQSTSVMVLMLSSNNFSGHVPKSISNIYRLLVLDLSNNS-FSGE-FP-AFGSDSLVGH  473 (757)
Q Consensus       398 ~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~-~~-~~~~~~~L~~  473 (757)
                      .+|++|+++++.+++. +...+..+++|++|++++|.+++..+..+..+++|++|++++|. ++.. +. ....+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            4555566655555432 22334455566666666665555555555555666666665542 2211 11 1234455555


Q ss_pred             EECcCCc-cccCC-Cchh---hhcccEEEccCCc--cccc-cchhccCCCCCCEEeCcCC-cccCcchhhccCCCCCCEE
Q 041016          474 VDISSNR-FSGEV-PSSF---GVTILMLSLSENK--FSGQ-LPQNLSNLSLLQHLDLHDN-NLTGEFPAFLSQLSSLQVL  544 (757)
Q Consensus       474 L~l~~n~-l~~~~-~~~~---~~~l~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L  544 (757)
                      |++++|. ++... ...+   ...++.|+++++.  ++.. +...+.++++|++|++++| .+++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            5655542 22110 0011   1224555555432  2221 2233455677777777765 3555556666667777777


Q ss_pred             EccCC-cCccccCcccCCCCCCCEEECcCC
Q 041016          545 NLRNT-ALEGSITDGLSNLTSLQILDLSNN  573 (757)
Q Consensus       545 ~Ls~n-~l~~~~~~~l~~l~~L~~L~ls~n  573 (757)
                      ++++| .+++.....++++++|++|++++|
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77775 455545555666777777777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.2e-14  Score=131.29  Aligned_cols=111  Identities=22%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCC
Q 041016          106 IFRIRSLMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNL  185 (757)
Q Consensus       106 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  185 (757)
                      +.+...+++|||++|+++ .++ ..+..+++|++|+|++|.++ .++ .+..+++|++|++++|+++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~-~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccC-ccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            445556666666666665 444 44455666666666666666 332 35666666666666666665444445556666


Q ss_pred             CEEEccCccCCccCc-hhccCCCCCCEEEccccccc
Q 041016          186 KQLILDDNLIQGQIP-AEIGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       186 ~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~  220 (757)
                      ++|++++|+++.... ..+..+++|++|++++|.++
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccc
Confidence            666666666553211 23455555555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=3.4e-15  Score=154.43  Aligned_cols=243  Identities=19%  Similarity=0.215  Sum_probs=114.7

Q ss_pred             cccccCCCCCCEEeCCCCCCCCC----CCccccCCCCCCCEEeCCCCcCCCC----------cCccccCCCCCCEEEccC
Q 041016          103 LAPIFRIRSLMTLDLSYNSMQGE----VPGTGFANLTRLTYLDLKDNNLNGS----------IPSQLFNLRYLEFLDLSA  168 (757)
Q Consensus       103 ~~~l~~l~~L~~L~Ls~n~l~~~----i~~~~~~~l~~L~~L~Ls~n~l~~~----------~p~~l~~l~~L~~L~Ls~  168 (757)
                      ..++...+.|++|+|++|.+...    +. ..+...++|+.|+++++.....          +...+..+++|++|+|++
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~-~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHH-HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHH-HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            34456677777788777766432    11 3456667777777776654311          112344566666666666


Q ss_pred             CcCCCcc----cccccCCCCCCEEEccCccCCccCchh-------------ccCCCCCCEEEccccccccc----cCccc
Q 041016          169 NAIEGKL----SSRVAGLKNLKQLILDDNLIQGQIPAE-------------IGNLTNLHKLSLRQNKFSGG----IPLSL  227 (757)
Q Consensus       169 n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~-------------~~~l~~L~~L~L~~n~l~~~----~~~~l  227 (757)
                      |.+....    ...+...++|++|++++|.+.......             ....+.|+.+++++|.+...    +...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            6665432    222344566666666666543211111             12334455555555544321    11122


Q ss_pred             cCCCCCCEEEccCCcCcccCcccccCCCCCCEEEccCCCCCCccchhhhcCCCCCEEEccCCccccc----cchhhhccC
Q 041016          228 LQLRKLETLDLQRNSLSGEIPEDIGTLANITILALSNNALTGAIPQSIRNMTKLVTLRLDSNVLSGE----ISTWLFDLQ  303 (757)
Q Consensus       228 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~  303 (757)
                      ...+.|++|++++|.++.....                   ..+...+..+++|++|++++|.++..    +...+..++
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~-------------------~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIE-------------------HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHH-------------------HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             hhhhhhcccccccccccccccc-------------------cchhhhhcchhhhcccccccccccccccccccccccccc
Confidence            3344455555555544321000                   00112233444444455544444321    122233444


Q ss_pred             CCcEEEccCCCCcCCCcccc------cCCcccceeecCCccCccC----cchhcc-CCCCCCEEEccCCcccC
Q 041016          304 GMKSLYLGGNKLKWNDNVSI------VPKCMLTELSLRSCSVRGS----IPLWLS-TQTELTFLDLSENELEG  365 (757)
Q Consensus       304 ~L~~L~L~~n~l~~~~~~~~------~~~~~L~~L~L~~~~~~~~----~~~~l~-~~~~L~~L~l~~n~l~~  365 (757)
                      +|++|++++|.++......+      .....|++|++++|.+...    +...+. ++++|++|++++|++..
T Consensus       244 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            45555555554442221111      1123355555555544332    223332 56788888888888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=6.6e-14  Score=119.96  Aligned_cols=102  Identities=31%  Similarity=0.397  Sum_probs=69.2

Q ss_pred             CEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccC
Q 041016          113 MTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDD  192 (757)
Q Consensus       113 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  192 (757)
                      |+|+|++|+++ .++  .++++++|++|++++|.++ .+|+.++.+++|++|++++|.++.. + .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~--~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC--CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc--ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCC
Confidence            56778888776 444  3677777788888877777 5666777777777777777777654 2 366677777777777


Q ss_pred             ccCCccC-chhccCCCCCCEEEccccccc
Q 041016          193 NLIQGQI-PAEIGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       193 n~l~~~~-p~~~~~l~~L~~L~L~~n~l~  220 (757)
                      |+++... ...+..+++|++|++++|.++
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            7766432 234566666666666666664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.5e-14  Score=129.15  Aligned_cols=111  Identities=25%  Similarity=0.256  Sum_probs=65.4

Q ss_pred             cCCCCCCCEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCC
Q 041016          131 FANLTRLTYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLH  210 (757)
Q Consensus       131 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  210 (757)
                      |.++.++++|+|++|+|+ .++..+..+++|++|+|++|.++..  +.|..+++|++|++++|.++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            556667777777777777 4455556677777777777776643  2356666666666666666644444445566666


Q ss_pred             EEEccccccccccC-ccccCCCCCCEEEccCCcCc
Q 041016          211 KLSLRQNKFSGGIP-LSLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       211 ~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~  244 (757)
                      +|++++|++..... ..+..+++|++|++++|.++
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            66666666542211 23445555555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.7e-13  Score=117.33  Aligned_cols=102  Identities=30%  Similarity=0.418  Sum_probs=71.3

Q ss_pred             CEEeCCCCcCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEcccc
Q 041016          138 TYLDLKDNNLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQN  217 (757)
Q Consensus       138 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  217 (757)
                      |+|+|++|+++ .++ .+..+++|++|++++|+++. +|..+..+++|++|++++|.+++ +| .++++++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57888888887 444 47778888888888888874 45567777777777777777764 33 4777777777777777


Q ss_pred             cccccc-CccccCCCCCCEEEccCCcCc
Q 041016          218 KFSGGI-PLSLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       218 ~l~~~~-~~~l~~l~~L~~L~l~~n~l~  244 (757)
                      ++.... ...+..+++|++|++++|.++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            776432 245666677777777777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=3.9e-14  Score=146.29  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=19.1

Q ss_pred             cCCCCCCEEEccCCCCCCc----cchhhhcCCCCCEEEccCCcc
Q 041016          252 GTLANITILALSNNALTGA----IPQSIRNMTKLVTLRLDSNVL  291 (757)
Q Consensus       252 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l  291 (757)
                      ..+++|++|++++|.+...    +...+..+++|++|++++|.+
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            3444555555555554432    222333445555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=1.2e-13  Score=129.37  Aligned_cols=144  Identities=26%  Similarity=0.317  Sum_probs=98.4

Q ss_pred             CCCEEeCcCC--cccCcchhhccCCCCCCEEEccCCcCccccCcccCCCCCCCEEECcCCcccccCCcccccccccccCC
Q 041016          516 LLQHLDLHDN--NLTGEFPAFLSQLSSLQVLNLRNTALEGSITDGLSNLTSLQILDLSNNNLLGKIPSSFGNLQGMIDTP  593 (757)
Q Consensus       516 ~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~l~~~~  593 (757)
                      ..+.+++.+.  .+. .++..+..+++|++|+|++|+++. ++ .+..+++|++|++++|.++ .+|..+..        
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~--------   91 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV--------   91 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH--------
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc--------
Confidence            3445555543  232 456667778888888888888774 33 4777888888888888775 33332222        


Q ss_pred             CCCCCCCcccCCccccceeEeeeccCccccccccccccCeEECcCCCCCCcCCccccCCCCCCEEeCCCCCCCccCC-cc
Q 041016          594 SILPTLPEIFSFPVEIQDLIVNWKNSKRGLSSKSLAIYSLMDLSNNQLSGEIPSSLGSLKGLKSLNLSYNQLQGNIP-ST  672 (757)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~  672 (757)
                                                        ++.|+.|++++|+++..  ..+..+++|++|++++|+++.... ..
T Consensus        92 ----------------------------------~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~  135 (198)
T d1m9la_          92 ----------------------------------ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDK  135 (198)
T ss_dssp             ----------------------------------HHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHH
T ss_pred             ----------------------------------ccccccccccccccccc--ccccccccccccccccchhcccccccc
Confidence                                              23447888888888743  347778888888888888875432 46


Q ss_pred             hhCCCCCCEEeCCCCcCccCCCCC----------ccCCCCCCEEe
Q 041016          673 FGNLEILETLDLSHNSLSGKIPQT----------FAKLQQLTSLY  707 (757)
Q Consensus       673 ~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~  707 (757)
                      |..+++|+.|++++|++....+..          +..+++|+.||
T Consensus       136 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            788888888888888877654433          55688888887

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=1.2e-13  Score=129.29  Aligned_cols=10  Identities=30%  Similarity=0.265  Sum_probs=4.9

Q ss_pred             hccCCCcEEE
Q 041016          300 FDLQGMKSLY  309 (757)
Q Consensus       300 ~~l~~L~~L~  309 (757)
                      ..+++|+.||
T Consensus       171 ~~lp~L~~LD  180 (198)
T d1m9la_         171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCCEES
T ss_pred             HHCCCcCEeC
Confidence            3455555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-11  Score=109.36  Aligned_cols=103  Identities=17%  Similarity=0.097  Sum_probs=49.6

Q ss_pred             EEeCCCCcCCCCcCccccCCCCCCEEEccCC-cCCCcccccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEcccc
Q 041016          139 YLDLKDNNLNGSIPSQLFNLRYLEFLDLSAN-AIEGKLSSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQN  217 (757)
Q Consensus       139 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  217 (757)
                      .++.+++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|++++|+++.+.+.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3444444444 33444444555555555433 244444444555555555555555555444555555555555555555


Q ss_pred             ccccccCccccCCCCCCEEEccCCcC
Q 041016          218 KFSGGIPLSLLQLRKLETLDLQRNSL  243 (757)
Q Consensus       218 ~l~~~~~~~l~~l~~L~~L~l~~n~l  243 (757)
                      +++...+..+. ..+|++|++++|.+
T Consensus        91 ~l~~l~~~~~~-~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQ-GLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTC-SCCCCEEECCSSCC
T ss_pred             CCcccChhhhc-cccccccccCCCcc
Confidence            55522222222 22455555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.7e-11  Score=109.37  Aligned_cols=106  Identities=16%  Similarity=0.094  Sum_probs=74.3

Q ss_pred             CCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCC-cCCCCcCccccCCCCCCEEEccCCcCCCcccccccCCCCCCEEEc
Q 041016          112 LMTLDLSYNSMQGEVPGTGFANLTRLTYLDLKDN-NLNGSIPSQLFNLRYLEFLDLSANAIEGKLSSRVAGLKNLKQLIL  190 (757)
Q Consensus       112 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  190 (757)
                      .+.++.+++.+. .+| ..+..+++|++|++++| .++...+.+|.++++|++|+|++|+++.+.+.+|.++++|++|+|
T Consensus        10 ~~~l~c~~~~~~-~~p-~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSL-HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCC-TTT-TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCc-cCc-ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            344666666665 455 55667777888888655 476555566777888888888888888777777888888888888


Q ss_pred             cCccCCccCchhccCCCCCCEEEccccccc
Q 041016          191 DDNLIQGQIPAEIGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       191 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  220 (757)
                      ++|+++...+..|.. .+|++|+|++|.+.
T Consensus        88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhcc-ccccccccCCCccc
Confidence            888887444444443 46888888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.6e-09  Score=92.92  Aligned_cols=66  Identities=30%  Similarity=0.167  Sum_probs=32.0

Q ss_pred             ccCCCCCCEEEccCCcCCCcc--cccccCCCCCCEEEccCccCCccCchhccCCCCCCEEEccccccc
Q 041016          155 LFNLRYLEFLDLSANAIEGKL--SSRVAGLKNLKQLILDDNLIQGQIPAEIGNLTNLHKLSLRQNKFS  220 (757)
Q Consensus       155 l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  220 (757)
                      +.++++|++|+|++|+++...  +..+..+++|+.|+|++|.++...+-.+....+|++|++++|.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            345556666666666655432  233444555555555555555332222223334555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.3e-08  Score=87.47  Aligned_cols=80  Identities=30%  Similarity=0.198  Sum_probs=55.6

Q ss_pred             ccccCeEECcCCCCCCcC--CccccCCCCCCEEeCCCCCCCccCCcchhCCCCCCEEeCCCCcCccCCCCC-------cc
Q 041016          628 LAIYSLMDLSNNQLSGEI--PSSLGSLKGLKSLNLSYNQLQGNIPSTFGNLEILETLDLSHNSLSGKIPQT-------FA  698 (757)
Q Consensus       628 ~~~l~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-------l~  698 (757)
                      ++.|+.|+|++|+|+...  +..+..+++|+.|+|++|+++...+-.+.....|+.|++++|++.......       +.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            345577777777776542  345677888888888888888654434445567888888888887655432       55


Q ss_pred             CCCCCCEEe
Q 041016          699 KLQQLTSLY  707 (757)
Q Consensus       699 ~l~~L~~L~  707 (757)
                      .+|+|++||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            678888886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.71  E-value=1.1e-05  Score=71.71  Aligned_cols=64  Identities=19%  Similarity=0.278  Sum_probs=29.2

Q ss_pred             CCCCCCEEeCcCC-cccCc----chhhccCCCCCCEEEccCCcCcccc----CcccCCCCCCCEEECcCCccc
Q 041016          513 NLSLLQHLDLHDN-NLTGE----FPAFLSQLSSLQVLNLRNTALEGSI----TDGLSNLTSLQILDLSNNNLL  576 (757)
Q Consensus       513 ~l~~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~ls~n~l~  576 (757)
                      +.++|++|+|+++ .+...    +...+...+.|++|+|++|.+....    .+.+...+.|++|++++|.++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            4466666666653 34321    2223444455555555555554211    122333444555555554443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=4e-05  Score=67.94  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             CCCCCCEEEccCc-cCCcc----CchhccCCCCCCEEEccccccccccC----ccccCCCCCCEEEccCCcCc
Q 041016          181 GLKNLKQLILDDN-LIQGQ----IPAEIGNLTNLHKLSLRQNKFSGGIP----LSLLQLRKLETLDLQRNSLS  244 (757)
Q Consensus       181 ~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~  244 (757)
                      +.++|+.|+|+++ .+...    +-..+...++|++|+|++|.+.....    ..+...+.|++|++++|.++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            4456666666653 23321    12234445555555555555542211    12223344555555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.19  E-value=4.2e-05  Score=67.78  Aligned_cols=67  Identities=15%  Similarity=0.168  Sum_probs=33.0

Q ss_pred             hccCCCCCCEEeCcC-CcccCc----chhhccCCCCCCEEEccCCcCccc----cCcccCCCCCCCEEECcCCccc
Q 041016          510 NLSNLSLLQHLDLHD-NNLTGE----FPAFLSQLSSLQVLNLRNTALEGS----ITDGLSNLTSLQILDLSNNNLL  576 (757)
Q Consensus       510 ~~~~l~~L~~L~Ls~-n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~  576 (757)
                      ...+.+.|++|++++ +.++..    +..++...+.|++|++++|.+...    +...+...++++.+++++|.+.
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            344556677777765 344422    223344455566666666655422    1123334455555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.87  E-value=0.00052  Score=60.41  Aligned_cols=64  Identities=16%  Similarity=0.174  Sum_probs=29.6

Q ss_pred             cCCCCCCEEEccC-ccCCcc----CchhccCCCCCCEEEccccccccccC----ccccCCCCCCEEEccCCcC
Q 041016          180 AGLKNLKQLILDD-NLIQGQ----IPAEIGNLTNLHKLSLRQNKFSGGIP----LSLLQLRKLETLDLQRNSL  243 (757)
Q Consensus       180 ~~l~~L~~L~L~~-n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l  243 (757)
                      .+.++|++|++++ +.++..    +-.++...++|++|++++|.+.....    ..+...+.++.+++++|.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            4455666666665 234321    12223445556666666555543211    1223344555555555444