Citrus Sinensis ID: 041055

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520------
MSADISEEQTGKSSGSKFPNSGFDSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL
ccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHccccccccccccccEEEEcccccEEcHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHccccEEccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHcccccEEEEcccccccccccHHHHHHcccccccccccccccccEEEEEccccccccccHHEEccHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEEcccHHHHHHHHHccccccccccccEEEEccccccHHHHHHHHHHccccEEEEEccccccccHHcccccccccccccccccccccccEEEEEcccccccccccccEEEEEEcccccccccccHHHHHcccccccccccccEEEEEccccEEEEccccHHHHccccccccHHHHHHHHccccccEEEEEcccccccccEEEEEEEEcccccccHHHHHHHHHHcc
cccccHHHHHccccccccccccccccccEEEHHcccccccccccccccccHHHHHHHHHHHHHcccccEEEEcccccEEEHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEcHHHHHHcccccccEEEEEccccccccccHHHHHHHccccccccccccccccEEEEEEccccccccccEEEEcHHHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHcccEEccccHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHccccEEEEcccccccccEEEEccccccccccccccccEcccEEEEEEccccccccccccEEEEEEEcccccccccccHHHHHHHEcccccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHHcc
msadiseeqtgkssgskfpnsgfdsetGIYHSLIQlgenyriptrtdldtatcvlsrfphpdlaeSRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVfvlapnsllypsICLAIFSlgailspansinteSEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVtsrdqsnnksvSVEELIECCdaadelpgcqltqddTAAILYssgttgtskgVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYqvnniplvppVILGLVKyckdssyltslrrvgsgaaplsKELADEFRakfpwvelrqgygltescgattfmvspkqararsgscgalsptfYAKVvdtetrlalppyqrgelwlksptimrgyfgneeataaafdedgwlktgdlcyfdgeGFLYIVDRIKELIkhngyqvapAELEAVLLshpnildaavipledeeagqipMAYVVRAAGSQLTEDQVMQFVTSQL
msadiseeqtgkssgskfpnsgfDSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASeelqkltkvnvpiivtsrdqsnnksvSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTetrlalppyqrgelwlkSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL
MSADISEEQTGKSSGSKFPNSGFDSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL
**************************TGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTS********VSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSP*******GSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAG****************
***********************DSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL
*****************FPNSGFDSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSR*********VEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVS**********CGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL
**********************FDSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSADISEEQTGKSSGSKFPNSGFDSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query526 2.2.26 [Sep-21-2011]
Q84P21546 4-coumarate--CoA ligase-l yes no 0.903 0.869 0.456 1e-121
Q84P25565 4-coumarate--CoA ligase-l no no 0.935 0.870 0.441 1e-117
Q10S72552 4-coumarate--CoA ligase-l yes no 0.866 0.826 0.470 1e-117
P0C5B6550 4-coumarate--CoA ligase-l no no 0.941 0.9 0.424 1e-115
Q9M0X9544 4-coumarate--CoA ligase-l no no 0.872 0.843 0.432 1e-114
Q3E6Y4552 4-coumarate--CoA ligase-l no no 0.937 0.893 0.419 1e-112
Q84P24566 4-coumarate--CoA ligase-l no no 0.946 0.879 0.414 1e-110
Q84P23562 4-coumarate--CoA ligase-l no no 0.923 0.864 0.418 1e-108
Q84P26550 4-coumarate--CoA ligase-l no no 0.952 0.910 0.405 1e-107
Q0DV32552 4-coumarate--CoA ligase-l no no 0.842 0.802 0.445 1e-102
>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2 Back     alignment and function desciption
 Score =  437 bits (1123), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/493 (45%), Positives = 321/493 (65%), Gaps = 18/493 (3%)

Query: 42  IPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGV 101
           +P    LD  T + S+         R+A ID++T + +T+ +L R++ S+A  L   +G+
Sbjct: 26  LPPNPSLDVTTFISSQ-----AHRGRIAFIDASTGQNLTFTELWRAVESVADCLSE-IGI 79

Query: 102 RKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEE 161
           RKG VV +L+PNS+L+P +CL++ SLGAI++  N +NT +EI KQ++DS   L  + S+ 
Sbjct: 80  RKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQIKDSNPVLAFTTSQL 139

Query: 162 LQKLTKVNVPIIVTSRDQSNNKSVS-VEELIECC--DAADELPGCQLTQDDTAAILYSSG 218
           L K++     + +   D+    SV  V  L+E    + +      ++ QDDTA +LYSSG
Sbjct: 140 LPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKEPSGNRVKERVDQDDTATLLYSSG 199

Query: 219 TTGTSKGVILTHANFISIMQLL--RWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276
           TTG SKGVI +H N I+++Q +  R+  D    +   F+C +PMFHIYGLA FATGL   
Sbjct: 200 TTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQR---FICTVPMFHIYGLAAFATGLLAY 256

Query: 277 GVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVK---YCKDSSYLTSLRRVGSGA 333
           G TI+V+ +F++  M+ AI  YQ  ++PLVPP+++ +V      K    L+S+  V  G 
Sbjct: 257 GSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNGADQIKAKYDLSSMHTVLCGG 316

Query: 334 APLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKV 393
           APLSKE+ + F  K+P V++ QGYGLTES G      + +++R R G+ G LS +   ++
Sbjct: 317 APLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTDTVEESR-RYGTAGKLSASMEGRI 375

Query: 394 VDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLY 453
           VD  T   L P Q GELWLK P+IM+GYF NEEAT++  D +GWL+TGDLCY D +GF++
Sbjct: 376 VDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIF 435

Query: 454 IVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQL 513
           +VDR+KELIK+ GYQVAPAELEA+LL+HP I DAAVIP  D+E GQ PMAYVVR  GS L
Sbjct: 436 VVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSL 495

Query: 514 TEDQVMQFVTSQL 526
           +E  +M+FV  Q+
Sbjct: 496 SEKTIMEFVAKQV 508
Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -
>sp|Q84P25|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2 Back     alignment and function description
>sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1 Back     alignment and function description
>sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0X9|4CLL7_ARATH 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana GN=4CLL7 PE=1 SV=1 Back     alignment and function description
>sp|Q3E6Y4|4CLL3_ARATH 4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2 Back     alignment and function description
>sp|Q84P24|4CLL6_ARATH 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2 Back     alignment and function description
>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2 Back     alignment and function description
>sp|Q84P26|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2 Back     alignment and function description
>sp|Q0DV32|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica GN=4CLL1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
255583744572 AMP dependent CoA ligase, putative [Rici 0.994 0.914 0.724 0.0
224109874585 acyl:coa ligase [Populus trichocarpa] gi 0.979 0.880 0.712 0.0
359486857563 PREDICTED: 4-coumarate--CoA ligase-like 0.986 0.921 0.700 0.0
147802303569 hypothetical protein VITISV_021990 [Viti 0.960 0.887 0.714 0.0
224100703555 acyl:coa ligase [Populus trichocarpa] gi 0.958 0.908 0.684 0.0
356574681569 PREDICTED: 4-coumarate--CoA ligase-like 0.988 0.913 0.655 0.0
356535511570 PREDICTED: 4-coumarate--CoA ligase-like 0.988 0.912 0.641 0.0
356533874583 PREDICTED: LOW QUALITY PROTEIN: 4-coumar 0.961 0.867 0.639 0.0
449525174559 PREDICTED: 4-coumarate--CoA ligase-like 0.952 0.896 0.642 0.0
358348267 847 4-coumarate-CoA ligase-like protein [Med 0.910 0.565 0.654 1e-179
>gi|255583744|ref|XP_002532625.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223527645|gb|EEF29756.1| AMP dependent CoA ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/526 (72%), Positives = 439/526 (83%), Gaps = 3/526 (0%)

Query: 2   SADISEEQTGKSSGSKFPNSGFDSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHP 61
           + DI EE +GK+    F  SGFD +TGIYHSL QLGE+ RIPTR DLDTA+ VLS+FPHP
Sbjct: 9   TTDIQEE-SGKARRPPFHQSGFDPQTGIYHSLHQLGESLRIPTRHDLDTASYVLSQFPHP 67

Query: 62  DLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSIC 121
           D AESRVALID AT  R++YA LHRSIR+LASGLYH L VRKGDVV V++PN++LYP+IC
Sbjct: 68  DNAESRVALIDLATDHRLSYASLHRSIRALASGLYHGLRVRKGDVVLVVSPNTILYPTIC 127

Query: 122 LAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVPIIVTSRDQSN 181
           LAIFS+GAILSPAN INTESE+ KQ+ DSGAKLIISA EEL KL +  VPI++T+R  ++
Sbjct: 128 LAIFSIGAILSPANPINTESELAKQILDSGAKLIISAPEELHKLNQNGVPIVLTTRITND 187

Query: 182 NKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLR 241
           + SVS+EELIECCD   E P  ++ Q DTAA+LYSSGTTGTSKGVILTHANFI+IM LL+
Sbjct: 188 SNSVSIEELIECCDPV-ESPQVRIMQSDTAAVLYSSGTTGTSKGVILTHANFIAIMTLLK 246

Query: 242 WTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVN 301
           W+V  T +QND+FLC IPMFHIYGLAFF  GLFC G+T V+MQRFDLQAM++AIK +QVN
Sbjct: 247 WSVYATSSQNDVFLCFIPMFHIYGLAFFGLGLFCAGITTVLMQRFDLQAMLDAIKIHQVN 306

Query: 302 NIPLVPPVILGLVKYC-KDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLT 360
           NIP VPPVILGLVK+  K    L+SLRRVGSGAAPLSKEL  EFR +FPWVELRQGYGLT
Sbjct: 307 NIPAVPPVILGLVKHASKLQCDLSSLRRVGSGAAPLSKELTQEFRLRFPWVELRQGYGLT 366

Query: 361 ESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRG 420
           ESC A TF  S +QA+A  GSCG L PTF AK+VD ET +ALPP + GE+WLKS TIM+G
Sbjct: 367 ESCAAATFFASDEQAKAHPGSCGRLVPTFTAKIVDFETGMALPPLKEGEVWLKSGTIMKG 426

Query: 421 YFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLS 480
           Y  NEEATAA  D DGWLKTGDL YF  +GFLYIVDRIKELIKHNGYQVAPAELEA+LL+
Sbjct: 427 YLRNEEATAATLDSDGWLKTGDLGYFHEDGFLYIVDRIKELIKHNGYQVAPAELEAILLT 486

Query: 481 HPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
           HP +LDAAVIPLEDEEAGQIPMAYVVRAA ++LTE+QV+QFV SQ+
Sbjct: 487 HPQVLDAAVIPLEDEEAGQIPMAYVVRAASAELTEEQVIQFVASQV 532

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224109874|ref|XP_002315339.1| acyl:coa ligase [Populus trichocarpa] gi|222864379|gb|EEF01510.1| acyl:coa ligase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359486857|ref|XP_002271586.2| PREDICTED: 4-coumarate--CoA ligase-like 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147802303|emb|CAN70408.1| hypothetical protein VITISV_021990 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224100703|ref|XP_002311981.1| acyl:coa ligase [Populus trichocarpa] gi|222851801|gb|EEE89348.1| acyl:coa ligase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356574681|ref|XP_003555474.1| PREDICTED: 4-coumarate--CoA ligase-like 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356535511|ref|XP_003536288.1| PREDICTED: 4-coumarate--CoA ligase-like 5-like [Glycine max] Back     alignment and taxonomy information
>gi|356533874|ref|XP_003535483.1| PREDICTED: LOW QUALITY PROTEIN: 4-coumarate--CoA ligase-like 5-like [Glycine max] Back     alignment and taxonomy information
>gi|449525174|ref|XP_004169593.1| PREDICTED: 4-coumarate--CoA ligase-like 5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|358348267|ref|XP_003638169.1| 4-coumarate-CoA ligase-like protein [Medicago truncatula] gi|355504104|gb|AES85307.1| 4-coumarate-CoA ligase-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query526
TAIR|locus:2034392546 OPCL1 "OPC-8:0 CoA ligase1" [A 0.903 0.869 0.458 2e-111
TAIR|locus:2034423565 AT1G20480 [Arabidopsis thalian 0.933 0.869 0.446 5.5e-109
TAIR|locus:2034403550 AT1G20500 [Arabidopsis thalian 0.941 0.9 0.424 2.2e-105
TAIR|locus:2115673544 AT4G05160 [Arabidopsis thalian 0.941 0.909 0.420 3.6e-105
TAIR|locus:2117209566 AT4G19010 [Arabidopsis thalian 0.946 0.879 0.414 5.4e-102
TAIR|locus:2176662550 4CL8 [Arabidopsis thaliana (ta 0.950 0.909 0.412 1.9e-99
TAIR|locus:2158559562 AT5G63380 [Arabidopsis thalian 0.944 0.884 0.420 3.1e-99
TAIR|locus:2094771570 4CL5 "4-coumarate:CoA ligase 5 0.897 0.828 0.417 1.1e-89
TAIR|locus:2094716556 4CL2 "4-coumarate:CoA ligase 2 0.872 0.825 0.393 7.2e-84
TAIR|locus:2015003561 4CL3 "4-coumarate:CoA ligase 3 0.865 0.811 0.398 1.5e-83
TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 226/493 (45%), Positives = 323/493 (65%)

Query:    42 IPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGV 101
             +P    LD  T + S+  H      R+A ID++T + +T+ +L R++ S+A  L   +G+
Sbjct:    26 LPPNPSLDVTTFISSQ-AH----RGRIAFIDASTGQNLTFTELWRAVESVADCLSE-IGI 79

Query:   102 RKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEE 161
             RKG VV +L+PNS+L+P +CL++ SLGAI++  N +NT +EI KQ++DS   L  + S+ 
Sbjct:    80 RKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLNTSNEIAKQIKDSNPVLAFTTSQL 139

Query:   162 LQKLTKVNVPIIVTSRDQSNNKSVS-VEELIECC--DAADELPGCQLTQDDTAAILYSSG 218
             L K++     + +   D+    SV  V  L+E    + +      ++ QDDTA +LYSSG
Sbjct:   140 LPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKEPSGNRVKERVDQDDTATLLYSSG 199

Query:   219 TTGTSKGVILTHANFISIMQLL--RWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCC 276
             TTG SKGVI +H N I+++Q +  R+  D    +   F+C +PMFHIYGLA FATGL   
Sbjct:   200 TTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQR---FICTVPMFHIYGLAAFATGLLAY 256

Query:   277 GVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKD--SSY-LTSLRRVGSGA 333
             G TI+V+ +F++  M+ AI  YQ  ++PLVPP+++ +V       + Y L+S+  V  G 
Sbjct:   257 GSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNGADQIKAKYDLSSMHTVLCGG 316

Query:   334 APLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKV 393
             APLSKE+ + F  K+P V++ QGYGLTES G      + +++R R G+ G LS +   ++
Sbjct:   317 APLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTDTVEESR-RYGTAGKLSASMEGRI 375

Query:   394 VDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLY 453
             VD  T   L P Q GELWLK P+IM+GYF NEEAT++  D +GWL+TGDLCY D +GF++
Sbjct:   376 VDPVTGQILGPKQTGELWLKGPSIMKGYFSNEEATSSTLDSEGWLRTGDLCYIDEDGFIF 435

Query:   454 IVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQL 513
             +VDR+KELIK+ GYQVAPAELEA+LL+HP I DAAVIP  D+E GQ PMAYVVR  GS L
Sbjct:   436 VVDRLKELIKYKGYQVAPAELEALLLTHPEITDAAVIPFPDKEVGQFPMAYVVRKTGSSL 495

Query:   514 TEDQVMQFVTSQL 526
             +E  +M+FV  Q+
Sbjct:   496 SEKTIMEFVAKQV 508
GO:0003824 "catalytic activity" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0009698 "phenylpropanoid metabolic process" evidence=ISS
GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS
GO:0005777 "peroxisome" evidence=IDA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015003 4CL3 "4-coumarate:CoA ligase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54P774CL1_DICDI6, ., 2, ., 1, ., 1, 20.34640.86310.8239yesno
Q65FT5MENE_BACLD6, ., 2, ., 1, ., 2, 60.33330.81930.9016yesno
C5D6U5MENE_GEOSW6, ., 2, ., 1, ., 2, 60.32110.83260.8902yesno
Q84P214CLL5_ARATH6, ., 2, ., 1, ., -0.45630.90300.8699yesno
Q10S724CLL4_ORYSJ6, ., 2, ., 1, ., -0.47000.86690.8260yesno
O53306FAC13_MYCTU6, ., 2, ., 1, ., 30.32830.82690.8648yesno
A7Z809MENE_BACA26, ., 2, ., 1, ., 2, 60.32180.82500.8911yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.2.10.766
4th Layer6.2.1.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018101001
SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_17, whole genome shotgun sequence); (569 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
cd05904504 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) 0.0
cd05911487 cd05911, Firefly_Luc_like, Firefly luciferase of l 1e-165
PLN02574560 PLN02574, PLN02574, 4-coumarate--CoA ligase-like 1e-162
PLN02246537 PLN02246, PLN02246, 4-coumarate--CoA ligase 1e-148
COG0318534 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ 1e-128
cd05936468 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain 1e-127
pfam00501412 pfam00501, AMP-binding, AMP-binding enzyme 1e-116
PLN02330546 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 1e-114
PRK07656513 PRK07656, PRK07656, long-chain-fatty-acid--CoA lig 1e-103
PRK06187521 PRK06187, PRK06187, long-chain-fatty-acid--CoA lig 1e-101
cd05917347 cd05917, FACL_like_2, Uncharacterized subfamily of 2e-99
cd05929342 cd05929, BACL_like, Bacterial Bile acid CoA ligase 2e-97
cd04433338 cd04433, AFD_class_I, Adenylate forming domain, Cl 6e-92
cd05935430 cd05935, LC_FACS_like, Putative long-chain fatty a 4e-91
PRK03640483 PRK03640, PRK03640, O-succinylbenzoic acid--CoA li 6e-88
cd05934421 cd05934, FACL_DitJ_like, Uncharacterized subfamily 5e-85
cd05907456 cd05907, VL_LC_FACS_like, Long-chain fatty acid Co 5e-83
cd05941430 cd05941, MCS, Malonyl-CoA synthetase (MCS) 3e-81
cd05903437 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li 3e-80
COG0365528 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat 8e-80
cd12119517 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth 1e-79
PRK06839496 PRK06839, PRK06839, acyl-CoA synthetase; Validated 2e-79
cd05920483 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l 1e-78
COG1022613 COG1022, FAA1, Long-chain acyl-CoA synthetases (AM 1e-77
PRK08314546 PRK08314, PRK08314, long-chain-fatty-acid--CoA lig 3e-76
cd05926345 cd05926, FACL_fum10p_like, Subfamily of fatty acid 4e-73
PRK07786542 PRK07786, PRK07786, long-chain-fatty-acid--CoA lig 5e-73
PRK05605573 PRK05605, PRK05605, long-chain-fatty-acid--CoA lig 1e-72
PRK08316523 PRK08316, PRK08316, acyl-CoA synthetase; Validated 1e-72
cd05912407 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase 2e-72
cd05922350 cd05922, FACL_like_6, Uncharacterized subfamily of 1e-69
cd12118520 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt 2e-68
PRK06710563 PRK06710, PRK06710, long-chain-fatty-acid--CoA lig 1e-65
PRK06178567 PRK06178, PRK06178, acyl-CoA synthetase; Validated 5e-64
TIGR01923436 TIGR01923, menE, O-succinylbenzoate-CoA ligase 7e-64
PRK06145497 PRK06145, PRK06145, acyl-CoA synthetase; Validated 7e-63
cd05959506 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 6e-61
PRK07529632 PRK07529, PRK07529, AMP-binding domain protein; Va 3e-60
cd05972430 cd05972, MACS_like, Medium-chain acyl-CoA syntheta 8e-60
PRK09088488 PRK09088, PRK09088, acyl-CoA synthetase; Validated 1e-58
PRK08008517 PRK08008, caiC, putative crotonobetaine/carnitine- 2e-58
cd05919436 cd05919, BCL_like, Benzoate CoA ligase (BCL) and s 1e-57
PRK08276502 PRK08276, PRK08276, long-chain-fatty-acid--CoA lig 3e-57
cd05971439 cd05971, MACS_like_3, Uncharacterized subfamily of 6e-57
PRK05677562 PRK05677, PRK05677, long-chain-fatty-acid--CoA lig 1e-56
PRK06155542 PRK06155, PRK06155, crotonobetaine/carnitine-CoA l 2e-56
PRK07059557 PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig 6e-56
cd05944359 cd05944, FACL_like_4, Uncharacterized subfamily of 7e-55
PRK08974560 PRK08974, PRK08974, long-chain-fatty-acid--CoA lig 3e-54
PRK07514504 PRK07514, PRK07514, malonyl-CoA synthase; Validate 2e-53
PRK12583558 PRK12583, PRK12583, acyl-CoA synthetase; Provision 3e-53
cd05930445 cd05930, A_NRPS, The adenylation domain of nonribo 4e-53
COG1021542 COG1021, EntE, Peptide arylation enzymes [Secondar 2e-52
cd05931547 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) 9e-52
PRK07788549 PRK07788, PRK07788, acyl-CoA synthetase; Validated 2e-51
TIGR03205541 TIGR03205, pimA, dicarboxylate--CoA ligase PimA 7e-51
PRK08315559 PRK08315, PRK08315, AMP-binding domain protein; Va 2e-50
PRK12492562 PRK12492, PRK12492, long-chain-fatty-acid--CoA lig 1e-49
PLN02860563 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase 1e-49
PRK06188524 PRK06188, PRK06188, acyl-CoA synthetase; Validated 1e-49
PRK07470528 PRK07470, PRK07470, acyl-CoA synthetase; Validated 3e-49
cd05969443 cd05969, MACS_like_4, Uncharacterized subfamily of 4e-49
cd05945447 cd05945, DltA, D-alanine:D-alanyl carrier protein 9e-49
PRK06087547 PRK06087, PRK06087, short chain acyl-CoA synthetas 2e-48
PRK13391511 PRK13391, PRK13391, acyl-CoA synthetase; Provision 9e-48
cd05974433 cd05974, MACS_like_1, Uncharacterized subfamily of 1e-47
TIGR03098517 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form 4e-47
cd05932504 cd05932, LC_FACS_bac, Bacterial long-chain fatty a 1e-46
PRK08751560 PRK08751, PRK08751, putative long-chain fatty acyl 3e-46
PRK04319570 PRK04319, PRK04319, acetyl-CoA synthetase; Provisi 4e-45
TIGR02275526 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP 7e-45
cd05909489 cd05909, AAS_C, C-terminal domain of the acyl-acyl 1e-44
TIGR01733409 TIGR01733, AA-adenyl-dom, amino acid adenylation d 1e-44
PRK08162545 PRK08162, PRK08162, acyl-CoA synthetase; Validated 3e-43
PRK12406509 PRK12406, PRK12406, long-chain-fatty-acid--CoA lig 9e-43
PRK13295547 PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig 2e-42
PRK07798533 PRK07798, PRK07798, acyl-CoA synthetase; Validated 1e-41
cd12117474 cd12117, A_NRPS_Srf_like, The adenylation domain o 2e-41
cd12114476 cd12114, A_NRPS_TlmIV_like, The adenylation domain 3e-41
PRK06164540 PRK06164, PRK06164, acyl-CoA synthetase; Validated 7e-41
cd05973440 cd05973, MACS_like_2, Uncharacterized subfamily of 2e-40
cd05970537 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s 7e-40
cd05923495 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) 2e-39
PRK05852534 PRK05852, PRK05852, acyl-CoA synthetase; Validated 5e-39
cd05918447 cd05918, A_NRPS_SidN3_like, The adenylation (A) do 6e-39
PRK05620576 PRK05620, PRK05620, long-chain-fatty-acid--CoA lig 9e-39
cd05958487 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) 4e-38
TIGR02262508 TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil 5e-38
cd05906560 cd05906, A_NRPS_TubE_like, The adenylation domain 1e-37
cd05968474 cd05968, AACS_like, Uncharacterized acyl-CoA synth 6e-37
PRK07787471 PRK07787, PRK07787, acyl-CoA synthetase; Validated 8e-37
cd12115449 cd12115, A_NRPS_Sfm_like, The adenylation domain o 1e-36
PRK13382537 PRK13382, PRK13382, acyl-CoA synthetase; Provision 4e-36
TIGR03208538 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate 4e-36
cd05967607 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) 5e-36
cd05927539 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty 1e-35
PLN03102579 PLN03102, PLN03102, acyl-activating enzyme; Provis 1e-35
cd12116438 cd12116, A_NRPS_Ta1_like, The adenylation domain o 3e-35
PRK09274552 PRK09274, PRK09274, peptide synthase; Provisional 4e-35
COG1020642 COG1020, EntF, Non-ribosomal peptide synthetase mo 6e-35
PRK086331146 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola 6e-35
cd05910455 cd05910, FACL_like_1, Uncharacterized subfamily of 1e-34
cd05940444 cd05940, FATP_FACS, Fatty acid transport proteins 1e-34
PLN02479567 PLN02479, PLN02479, acetate-CoA ligase 2e-34
cd05928530 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co 3e-34
PRK06018542 PRK06018, PRK06018, putative acyl-CoA synthetase; 6e-34
PRK10946536 PRK10946, entE, enterobactin synthase subunit E; P 6e-31
PRK09029458 PRK09029, PRK09029, O-succinylbenzoic acid--CoA li 1e-30
cd05908499 cd05908, A_NRPS_MycA_like, The adenylation domain 4e-30
PRK13390501 PRK13390, PRK13390, acyl-CoA synthetase; Provision 6e-30
cd05966602 cd05966, ACS, Acetyl-CoA synthetase (also known as 1e-29
TIGR02188625 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase 4e-29
cd05914448 cd05914, FACL_like_3, Uncharacterized subfamily of 7e-29
PRK07638487 PRK07638, PRK07638, acyl-CoA synthetase; Validated 8e-29
PRK07008539 PRK07008, PRK07008, long-chain-fatty-acid--CoA lig 1e-28
PRK12467 3956 PRK12467, PRK12467, peptide synthase; Provisional 3e-28
PRK08279600 PRK08279, PRK08279, long-chain-acyl-CoA synthetase 4e-28
cd05915509 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase 5e-28
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 5e-28
PRK13388540 PRK13388, PRK13388, acyl-CoA synthetase; Provision 1e-27
cd05924365 cd05924, FACL_like_5, Uncharacterized subfamily of 7e-27
PRK12467 3956 PRK12467, PRK12467, peptide synthase; Provisional 9e-27
PRK07867529 PRK07867, PRK07867, acyl-CoA synthetase; Validated 9e-27
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 9e-26
PTZ00216700 PTZ00216, PTZ00216, acyl-CoA synthetase; Provision 4e-25
PRK05857540 PRK05857, PRK05857, acyl-CoA synthetase; Validated 5e-25
PRK06334539 PRK06334, PRK06334, long chain fatty acid--[acyl-c 2e-24
PRK09192579 PRK09192, PRK09192, acyl-CoA synthetase; Validated 1e-23
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 2e-23
cd05921559 cd05921, FCS, Feruloyl-CoA synthetase (FCS) 2e-23
PRK07768545 PRK07768, PRK07768, long-chain-fatty-acid--CoA lig 3e-23
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 2e-22
PRK07824358 PRK07824, PRK07824, O-succinylbenzoic acid--CoA li 6e-22
PRK13383516 PRK13383, PRK13383, acyl-CoA synthetase; Provision 2e-21
PRK10252 1296 PRK10252, entF, enterobactin synthase subunit F; P 3e-21
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 5e-21
PTZ00342746 PTZ00342, PTZ00342, acyl-CoA synthetase; Provision 9e-21
cd05933594 cd05933, ACSBG_like, Bubblegum-like very long-chai 1e-20
PRK12582624 PRK12582, PRK12582, acyl-CoA synthetase; Provision 2e-20
PRK12467 3956 PRK12467, PRK12467, peptide synthase; Provisional 8e-20
cd05937468 cd05937, FATP_chFAT1_like, Uncharacterized subfami 2e-19
PRK068141140 PRK06814, PRK06814, acylglycerophosphoethanolamine 3e-19
PRK00174637 PRK00174, PRK00174, acetyl-CoA synthetase; Provisi 4e-19
PRK06060 705 PRK06060, PRK06060, acyl-CoA synthetase; Validated 5e-19
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 7e-19
PRK08043718 PRK08043, PRK08043, bifunctional acyl-[acyl carrie 1e-18
PLN02861660 PLN02861, PLN02861, long-chain-fatty-acid-CoA liga 2e-18
TIGR01734502 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho 2e-18
PLN02654666 PLN02654, PLN02654, acetate-CoA ligase 5e-18
PLN02736651 PLN02736, PLN02736, long-chain acyl-CoA synthetase 6e-18
PLN02614666 PLN02614, PLN02614, long-chain acyl-CoA synthetase 9e-18
TIGR02316628 TIGR02316, propion_prpE, propionate--CoA ligase 2e-17
cd05938535 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport 5e-17
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 2e-16
PRK07445452 PRK07445, PRK07445, O-succinylbenzoic acid--CoA li 1e-15
PLN02387696 PLN02387, PLN02387, long-chain-fatty-acid-CoA liga 2e-15
PLN02430660 PLN02430, PLN02430, long-chain-fatty-acid-CoA liga 1e-14
PRK07769631 PRK07769, PRK07769, long-chain-fatty-acid--CoA lig 2e-14
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 3e-14
PTZ00237647 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi 5e-14
cd05927 539 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty 3e-13
PRK04813503 PRK04813, PRK04813, D-alanine--poly(phosphoribitol 3e-13
PRK12476612 PRK12476, PRK12476, putative fatty-acid--CoA ligas 6e-13
cd05939474 cd05939, hsFATP4_like, Fatty acid transport protei 2e-12
cd05943616 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac 4e-12
cd05905556 cd05905, Dip2, Disco-interacting protein 2 (Dip2) 5e-12
PRK08180614 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe 2e-11
PRK05851525 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c 3e-11
PLN02387 696 PLN02387, PLN02387, long-chain-fatty-acid-CoA liga 3e-10
PRK05850578 PRK05850, PRK05850, acyl-CoA synthetase; Validated 5e-10
PRK08180614 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe 6e-10
PRK10524629 PRK10524, prpE, propionyl-CoA synthetase; Provisio 9e-09
PLN02736 651 PLN02736, PLN02736, long-chain acyl-CoA synthetase 1e-08
COG1541438 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme 5e-08
PRK08308414 PRK08308, PRK08308, acyl-CoA synthetase; Validated 3e-07
TIGR01217652 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase 3e-07
cd05933 594 cd05933, ACSBG_like, Bubblegum-like very long-chai 1e-05
PRK04813503 PRK04813, PRK04813, D-alanine--poly(phosphoribitol 1e-05
PRK10524629 PRK10524, prpE, propionyl-CoA synthetase; Provisio 1e-05
PRK03584655 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr 7e-05
PLN02430 660 PLN02430, PLN02430, long-chain-fatty-acid-CoA liga 1e-04
PRK05850578 PRK05850, PRK05850, acyl-CoA synthetase; Validated 1e-04
PLN03052728 PLN03052, PLN03052, acetate--CoA ligase; Provision 5e-04
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) Back     alignment and domain information 
 Score =  650 bits (1679), Expect = 0.0
 Identities = 249/487 (51%), Positives = 325/487 (66%), Gaps = 13/487 (2%)

Query: 42  IPTRTDLDTAT-CVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALG 100
           IP    LD+A+    S F        R ALID+AT   +TYA+L R +R LA+GL    G
Sbjct: 1   IPKDLSLDSASLLFASEFG------DRPALIDAATGRALTYAELERLVRRLAAGLAA-RG 53

Query: 101 VRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASE 160
            RKGDVV +L+PNSL +P + LA+ S GA+++ AN + T +EI KQV+DSGAKL I+ SE
Sbjct: 54  GRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSE 113

Query: 161 ELQKLTKVNVPIIVTSRDQSNNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTT 220
             +KL  + +  +V      +  +   + L        E P   + QDD AA+ YSSGTT
Sbjct: 114 LAEKLASLALEPVVLLDSADDGSAAIDDLLFADEP---EPPVVVIKQDDVAALPYSSGTT 170

Query: 221 GTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTI 280
           G SKGV+LTH N I+ +  L         + D+ LC++PMFHIYGL      L   G T+
Sbjct: 171 GRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATV 230

Query: 281 VVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLSKE 339
           VVM RFDL+  + AI+ Y+V ++P+VPP++L LVK+     Y L+SL+++GSGAAPL KE
Sbjct: 231 VVMPRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKE 290

Query: 340 LADEFRAKFPWVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETR 399
           LA+ FRA+FP VEL QGYG+TES   TT    P++   + GS G L P   AK+VD ET 
Sbjct: 291 LAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDP-KPGSVGRLVPNVEAKIVDPETG 349

Query: 400 LALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIK 459
            +LPP Q GELW++ P +M+GY  N EATA   D+DGWL TGDL YFD +G+L+IVDR+K
Sbjct: 350 ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLK 409

Query: 460 ELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVM 519
           ELIK+ G+QVAPAELEA+LLSHP I DAAVIP  DEEAG+IPMA+VVR  GS+L+ED+VM
Sbjct: 410 ELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPGSELSEDEVM 469

Query: 520 QFVTSQL 526
           QFV  Q+
Sbjct: 470 QFVAKQV 476

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) Back     alignment and domain information
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like Back     alignment and domain information
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase Back     alignment and domain information
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD Back     alignment and domain information
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme Back     alignment and domain information
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins Back     alignment and domain information
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I Back     alignment and domain information
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase Back     alignment and domain information
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases Back     alignment and domain information
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) Back     alignment and domain information
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) Back     alignment and domain information
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles Back     alignment and domain information
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis Back     alignment and domain information
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) Back     alignment and domain information
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis Back     alignment and domain information
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase Back     alignment and domain information
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) Back     alignment and domain information
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated Back     alignment and domain information
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) Back     alignment and domain information
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes Back     alignment and domain information
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) Back     alignment and domain information
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated Back     alignment and domain information
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) Back     alignment and domain information
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) Back     alignment and domain information
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA Back     alignment and domain information
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated Back     alignment and domain information
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase Back     alignment and domain information
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) Back     alignment and domain information
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) Back     alignment and domain information
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) Back     alignment and domain information
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated Back     alignment and domain information
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase Back     alignment and domain information
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) Back     alignment and domain information
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain Back     alignment and domain information
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) Back     alignment and domain information
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes Back     alignment and domain information
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) Back     alignment and domain information
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like Back     alignment and domain information
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) Back     alignment and domain information
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) Back     alignment and domain information
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) Back     alignment and domain information
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family Back     alignment and domain information
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents Back     alignment and domain information
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae Back     alignment and domain information
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) Back     alignment and domain information
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) Back     alignment and domain information
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional Back     alignment and domain information
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase Back     alignment and domain information
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes Back     alignment and domain information
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase Back     alignment and domain information
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) Back     alignment and domain information
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional Back     alignment and domain information
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) Back     alignment and domain information
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) Back     alignment and domain information
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase Back     alignment and domain information
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) Back     alignment and domain information
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) Back     alignment and domain information
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi Back     alignment and domain information
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase Back     alignment and domain information
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase Back     alignment and domain information
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) Back     alignment and domain information
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins Back     alignment and domain information
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) Back     alignment and domain information
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2) Back     alignment and domain information
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase Back     alignment and domain information
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) Back     alignment and domain information
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 526
KOG1176537 consensus Acyl-CoA synthetase [Lipid transport and 100.0
KOG1177596 consensus Long chain fatty acid acyl-CoA ligase [L 100.0
COG0365528 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l 100.0
COG0318534 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l 100.0
PLN02574560 4-coumarate--CoA ligase-like 100.0
PLN02654666 acetate-CoA ligase 100.0
PTZ00342746 acyl-CoA synthetase; Provisional 100.0
PLN02614666 long-chain acyl-CoA synthetase 100.0
TIGR02316628 propion_prpE propionate--CoA ligase. This family c 100.0
PTZ00237647 acetyl-CoA synthetase; Provisional 100.0
PLN02246537 4-coumarate--CoA ligase 100.0
PRK07529632 AMP-binding domain protein; Validated 100.0
TIGR02188625 Ac_CoA_lig_AcsA acetate--CoA ligase. This model de 100.0
PLN02736651 long-chain acyl-CoA synthetase 100.0
PLN02860563 o-succinylbenzoate-CoA ligase 100.0
PRK07788549 acyl-CoA synthetase; Validated 100.0
PLN02861660 long-chain-fatty-acid-CoA ligase 100.0
PLN02330546 4-coumarate--CoA ligase-like 1 100.0
PRK00174637 acetyl-CoA synthetase; Provisional 100.0
PRK06334539 long chain fatty acid--[acyl-carrier-protein] liga 100.0
COG1021542 EntE Peptide arylation enzymes [Secondary metaboli 100.0
PRK05677562 long-chain-fatty-acid--CoA ligase; Validated 100.0
KOG1256691 consensus Long-chain acyl-CoA synthetases (AMP-for 100.0
PRK04319570 acetyl-CoA synthetase; Provisional 100.0
COG1022613 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) 100.0
PRK09274552 peptide synthase; Provisional 100.0
PRK10524629 prpE propionyl-CoA synthetase; Provisional 100.0
PRK13382537 acyl-CoA synthetase; Provisional 100.0
PRK13295547 cyclohexanecarboxylate-CoA ligase; Reviewed 100.0
PLN02387696 long-chain-fatty-acid-CoA ligase family protein 100.0
PRK08314546 long-chain-fatty-acid--CoA ligase; Validated 100.0
PLN03052728 acetate--CoA ligase; Provisional 100.0
PRK06060 705 acyl-CoA synthetase; Validated 100.0
PRK06839496 acyl-CoA synthetase; Validated 100.0
PRK03584655 acetoacetyl-CoA synthetase; Provisional 100.0
PRK12583558 acyl-CoA synthetase; Provisional 100.0
TIGR01217652 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym 100.0
PRK07656513 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK05852534 acyl-CoA synthetase; Validated 100.0
PRK07769631 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK05605573 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK08315559 AMP-binding domain protein; Validated 100.0
PRK07638487 acyl-CoA synthetase; Validated 100.0
TIGR02275527 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot 100.0
PRK08180614 feruloyl-CoA synthase; Reviewed 100.0
PRK06155542 crotonobetaine/carnitine-CoA ligase; Provisional 100.0
PTZ00216700 acyl-CoA synthetase; Provisional 100.0
PLN02430660 long-chain-fatty-acid-CoA ligase 100.0
PRK09088488 acyl-CoA synthetase; Validated 100.0
PRK07514504 malonyl-CoA synthase; Validated 100.0
PRK06145497 acyl-CoA synthetase; Validated 100.0
TIGR03208538 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. 100.0
PRK07786542 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK08008517 caiC putative crotonobetaine/carnitine-CoA ligase; 100.0
PRK08316523 acyl-CoA synthetase; Validated 100.0
PRK06087547 short chain acyl-CoA synthetase; Reviewed 100.0
PRK12492562 long-chain-fatty-acid--CoA ligase; Provisional 100.0
PRK03640483 O-succinylbenzoic acid--CoA ligase; Provisional 100.0
PRK05857540 acyl-CoA synthetase; Validated 100.0
PRK12476612 putative fatty-acid--CoA ligase; Provisional 100.0
PRK07059557 Long-chain-fatty-acid--CoA ligase; Validated 100.0
TIGR03098515 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor 100.0
PLN03102579 acyl-activating enzyme; Provisional 100.0
PRK07867529 acyl-CoA synthetase; Validated 100.0
PRK06164540 acyl-CoA synthetase; Validated 100.0
PRK08043718 bifunctional acyl-[acyl carrier protein] synthetas 100.0
PRK07470528 acyl-CoA synthetase; Validated 100.0
PRK13388540 acyl-CoA synthetase; Provisional 100.0
PRK05851525 long-chain-fatty-acid--[acyl-carrier-protein] liga 100.0
PRK12467 3956 peptide synthase; Provisional 100.0
PRK06178567 acyl-CoA synthetase; Validated 100.0
PRK10946536 entE enterobactin synthase subunit E; Provisional 100.0
PRK13383516 acyl-CoA synthetase; Provisional 100.0
PRK06710563 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK08751560 putative long-chain fatty acyl CoA ligase; Provisi 100.0
PRK06187521 long-chain-fatty-acid--CoA ligase; Validated 100.0
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 100.0
TIGR03205541 pimA dicarboxylate--CoA ligase PimA. PimA, a membe 100.0
PRK07008539 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK07787471 acyl-CoA synthetase; Validated 100.0
PRK12582624 acyl-CoA synthetase; Provisional 100.0
PRK086331146 2-acyl-glycerophospho-ethanolamine acyltransferase 100.0
PRK13390501 acyl-CoA synthetase; Provisional 100.0
PRK08279600 long-chain-acyl-CoA synthetase; Validated 100.0
PRK12316 5163 peptide synthase; Provisional 100.0
PRK06188524 acyl-CoA synthetase; Validated 100.0
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 100.0
PRK05620576 long-chain-fatty-acid--CoA ligase; Validated 100.0
KOG1175626 consensus Acyl-CoA synthetase [Lipid transport and 100.0
PRK12316 5163 peptide synthase; Provisional 100.0
PRK12467 3956 peptide synthase; Provisional 100.0
PRK06018542 putative acyl-CoA synthetase; Provisional 100.0
PLN02479567 acetate-CoA ligase 100.0
TIGR02262508 benz_CoA_lig benzoate-CoA ligase family. Character 100.0
PRK08974560 long-chain-fatty-acid--CoA ligase; Validated 100.0
TIGR01734502 D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig 100.0
PRK13391511 acyl-CoA synthetase; Provisional 100.0
PRK12406509 long-chain-fatty-acid--CoA ligase; Provisional 100.0
KOG1180678 consensus Acyl-CoA synthetase [Lipid transport and 100.0
PRK07445452 O-succinylbenzoic acid--CoA ligase; Reviewed 100.0
PRK08276502 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK08162545 acyl-CoA synthetase; Validated 100.0
PRK07868994 acyl-CoA synthetase; Validated 100.0
PRK09192579 acyl-CoA synthetase; Validated 100.0
PRK05691 4334 peptide synthase; Validated 100.0
PLN03051499 acyl-activating enzyme; Provisional 100.0
PRK04813503 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
PRK05850578 acyl-CoA synthetase; Validated 100.0
PRK07798533 acyl-CoA synthetase; Validated 100.0
PRK05691 4334 peptide synthase; Validated 100.0
PRK068141140 acylglycerophosphoethanolamine acyltransferase; Pr 100.0
PF00501417 AMP-binding: AMP-binding enzyme; InterPro: IPR0008 100.0
PRK09029458 O-succinylbenzoic acid--CoA ligase; Provisional 100.0
TIGR01923436 menE O-succinylbenzoate-CoA ligase. This model rep 100.0
TIGR01733408 AA-adenyl-dom amino acid adenylation domain. This 100.0
PRK07768545 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK08308414 acyl-CoA synthetase; Validated 100.0
KOG1179649 consensus Very long-chain acyl-CoA synthetase/fatt 100.0
PTZ00297 1452 pantothenate kinase; Provisional 100.0
PRK07824358 O-succinylbenzoic acid--CoA ligase; Provisional 100.0
COG1020642 EntF Non-ribosomal peptide synthetase modules and 100.0
TIGR02372386 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv 100.0
TIGR02155422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 100.0
TIGR03335445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 99.98
KOG36281363 consensus Predicted AMP-binding protein [General f 99.97
COG1541438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 99.96
KOG1178 1032 consensus Non-ribosomal peptide synthetase/alpha-a 99.95
TIGR03089227 conserved hypothetical protein TIGR03089. This pro 99.94
KOG3628 1363 consensus Predicted AMP-binding protein [General f 99.78
TIGR02304430 aden_form_hyp probable adenylate-forming enzyme. M 99.76
PRK09188365 serine/threonine protein kinase; Provisional 99.65
PF04443365 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR 99.34
PF03321528 GH3: GH3 auxin-responsive promoter; InterPro: IPR0 98.75
PF1319373 AMP-binding_C: AMP-binding enzyme C-terminal domai 98.47
PLN02249597 indole-3-acetic acid-amido synthetase 98.31
PLN02247606 indole-3-acetic acid-amido synthetase 98.23
PLN02620612 indole-3-acetic acid-amido synthetase 98.1
PF1453596 AMP-binding_C_2: AMP-binding enzyme C-terminal dom 96.37
COG1541438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 94.31
TIGR03335445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 86.55
TIGR02155422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 86.19
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-82  Score=635.17  Aligned_cols=451  Identities=43%  Similarity=0.682  Sum_probs=395.7

Q ss_pred             ceEEEeCCC-CceeCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHH
Q 041055           67 RVALIDSAT-HERVTYAQLHRSIRSLASGLYHALG--VRKGDVVFVLAPNSLLYPSICLAIFSLGAILSPANSINTESEI  143 (526)
Q Consensus        67 ~~a~~~~~~-~~~~Ty~el~~~~~~lA~~L~~~~g--l~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l  143 (526)
                      .++++.... ++.+||+|+++++.|+|..|.+ +|  +++||+|++++||+++++.+++||+.+|+++.++||.+.+.++
T Consensus        33 ~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~-~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei  111 (537)
T KOG1176|consen   33 NTSLVYQDSDGRELTYSELHDRCRRLASALSE-LGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEI  111 (537)
T ss_pred             cceEEEecCCCcEEcHHHHHHHHHHHHHHHHh-cCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHH
Confidence            366665432 6999999999999999999997 66  7899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEEcchhHHHhhcC----CCCEEEEcCCCCCCCcch-------HHHHhhhcCCCCCCCCCCCCCCCEEE
Q 041055          144 VKQVRDSGAKLIISASEELQKLTKV----NVPIIVTSRDQSNNKSVS-------VEELIECCDAADELPGCQLTQDDTAA  212 (526)
Q Consensus       144 ~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~a~  212 (526)
                      .++++.++++++|++.+..+++...    ..+++++...........       +..+.....+  .. ......+|+++
T Consensus       112 ~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~dd~~~  188 (537)
T KOG1176|consen  112 AKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP--DG-IRPVSEDDTAA  188 (537)
T ss_pred             HHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCC--cc-cccCCCCCeEE
Confidence            9999999999999999988877532    255666654311111111       2221111111  11 23556799999


Q ss_pred             EEcCCCCCCCchHHHhhhHHHHHHHHHHhhhhcccCCCCcEEEEeCChhHHHHHHHHHHhhcccCcEEEEecCCCHHHHH
Q 041055          213 ILYSSGTTGTSKGVILTHANFISIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMI  292 (526)
Q Consensus       213 i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~  292 (526)
                      ++|||||||.||||++||+++..+.......+.  ....++.++.+|++|.+|+...+...+..|+++++...|+++.++
T Consensus       189 il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~--~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~  266 (537)
T KOG1176|consen  189 ILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWE--LTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFL  266 (537)
T ss_pred             EecCCCCCCCCceEEEecHHHHHHHHHhhhccc--CCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHH
Confidence            999999999999999999999887665554444  456899999999999999977666688888888888899999999


Q ss_pred             HHHHhcCccEeecccHHHHHHHhhc-cCCCCCCCceEEEEecCCCCHHHHHHHHHhCCCCceeeccccccccceeecccC
Q 041055          293 EAIKTYQVNNIPLVPPVILGLVKYC-KDSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGYGLTESCGATTFMVS  371 (526)
Q Consensus       293 ~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~  371 (526)
                      +.+++|++|+++++|+++..|++.+ ....+++++|.+.+||+++++++.+++++++|+..+.++|||||+++.++.+..
T Consensus       267 ~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~  346 (537)
T KOG1176|consen  267 DLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDW  346 (537)
T ss_pred             HHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCC
Confidence            9999999999999999999999984 667999999999999999999999999999988999999999999988887665


Q ss_pred             cccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccccccCCCHHHHhcccCCCCeeeccceEEEcCCCc
Q 041055          372 PKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGF  451 (526)
Q Consensus       372 ~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~G~  451 (526)
                      ...  .+++++|.+++++..++.+ ++|+.+++++.||||++|+++++||++||++|++.|+++|||+|||+|++|+||+
T Consensus       347 ~~e--~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~  423 (537)
T KOG1176|consen  347 GPE--RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGY  423 (537)
T ss_pred             Ccc--CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCe
Confidence            554  3599999999988777777 8899999999999999999999999999999999998889999999999999999


Q ss_pred             EEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHHhcC
Q 041055          452 LYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL  526 (526)
Q Consensus       452 l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~l~~~l~~~l  526 (526)
                      |+|.||+||+||.+|++|+|.|||++|.+||.|.|||||+++|+..||.|+||||+++|...++++|++||++||
T Consensus       424 l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l  498 (537)
T KOG1176|consen  424 LYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKL  498 (537)
T ss_pred             EEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] Back     alignment and domain information
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02574 4-coumarate--CoA ligase-like Back     alignment and domain information
>PLN02654 acetate-CoA ligase Back     alignment and domain information
>PTZ00342 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02614 long-chain acyl-CoA synthetase Back     alignment and domain information
>TIGR02316 propion_prpE propionate--CoA ligase Back     alignment and domain information
>PTZ00237 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02246 4-coumarate--CoA ligase Back     alignment and domain information
>PRK07529 AMP-binding domain protein; Validated Back     alignment and domain information
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase Back     alignment and domain information
>PLN02736 long-chain acyl-CoA synthetase Back     alignment and domain information
>PLN02860 o-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK07788 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02861 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PLN02330 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>PRK00174 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] Back     alignment and domain information
>PRK04319 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>PRK09274 peptide synthase; Provisional Back     alignment and domain information
>PRK10524 prpE propionyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK13382 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>PLN02387 long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PLN03052 acetate--CoA ligase; Provisional Back     alignment and domain information
>PRK06060 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06839 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK03584 acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK12583 acyl-CoA synthetase; Provisional Back     alignment and domain information
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase Back     alignment and domain information
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05852 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08315 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK07638 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>PRK08180 feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>PTZ00216 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02430 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PRK09088 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07514 malonyl-CoA synthase; Validated Back     alignment and domain information
>PRK06145 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>PRK08316 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06087 short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PRK05857 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12476 putative fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated Back     alignment and domain information
>PLN03102 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK07867 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06164 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK07470 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13388 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK06178 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK10946 entE enterobactin synthase subunit E; Provisional Back     alignment and domain information
>PRK13383 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>TIGR03205 pimA dicarboxylate--CoA ligase PimA Back     alignment and domain information
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07787 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12582 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK13390 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08279 long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK06188 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK06018 putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02479 acetate-CoA ligase Back     alignment and domain information
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family Back     alignment and domain information
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>PRK13391 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed Back     alignment and domain information
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08162 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07868 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK09192 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PLN03051 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>PRK05850 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07798 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] Back     alignment and domain information
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>TIGR01923 menE O-succinylbenzoate-CoA ligase Back     alignment and domain information
>TIGR01733 AA-adenyl-dom amino acid adenylation domain Back     alignment and domain information
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08308 acyl-CoA synthetase; Validated Back     alignment and domain information
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only] Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR03089 conserved hypothetical protein TIGR03089 Back     alignment and domain information
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only] Back     alignment and domain information
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme Back     alignment and domain information
>PRK09188 serine/threonine protein kinase; Provisional Back     alignment and domain information
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria Back     alignment and domain information
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin Back     alignment and domain information
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B Back     alignment and domain information
>PLN02249 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PLN02247 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PLN02620 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
3a9u_A536 Crystal Structures And Enzymatic Mechanisms Of A Po 7e-85
3tsy_A 979 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr 4e-83
3qya_A582 Crystal Structure Of A Red-Emitter Mutant Of Lampyr 6e-74
3iep_A551 Firefly Luciferase Apo Structure (P41 Form) Length 7e-70
1ba3_A550 Firefly Luciferase In Complex With Bromoform Length 7e-70
4g36_A555 Photinus Pyralis Luciferase In The Adenylate-Formin 7e-70
4g37_A555 Structure Of Cross-Linked Firefly Luciferase In Sec 1e-67
2d1t_A548 Crystal Structure Of The Thermostable Japanese Fire 3e-67
2d1q_A548 Crystal Structure Of The Thermostable Japanese Fire 1e-66
2d1s_A548 Crystal Structure Of The Thermostable Japanese Fire 2e-66
3r44_A517 Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas 3e-53
1ult_A541 Crystal Structure Of Tt0168 From Thermus Thermophil 1e-41
3t5b_A396 Crystal Structure Of N-Terminal Domain Of Facl13 Fr 3e-39
4fuq_A503 Crystal Structure Of Apo Matb From Rhodopseudomonas 5e-38
3g7s_A549 Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li 6e-38
3ivr_A509 Crystal Structure Of Putative Long-Chain-Fatty-Acid 2e-37
4fut_A503 Crystal Structure Of Atp Bound Matb From Rhodopseud 2e-32
4gxr_A503 Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len 3e-30
4gxq_A506 Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer 4e-30
1mdb_A539 Crystal Structure Of Dhbe In Complex With Dhb-adeny 1e-29
3rg2_A 617 Structure Of A Two-Domain Nrps Fusion Protein Conta 6e-28
3ipl_A501 Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig 1e-27
1md9_A539 Crystal Structure Of Dhbe In Complex With Dhb And A 6e-27
2v7b_A529 Crystal Structures Of A Benzoate Coa Ligase From Bu 1e-26
3etc_A580 2.1 A Structure Of Acyl-Adenylate Synthetase From M 3e-26
2qvx_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO 3e-26
2qvz_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO 2e-25
3cw8_X504 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb 2e-25
3nyq_A505 Malonyl-Coa Ligase Ternary Product Complex With Met 4e-25
1t5d_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl 5e-25
3dlp_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, 6e-25
2p2b_A652 Acetyl-coa Synthetase, V386a Mutation Length = 652 7e-25
2p20_A652 Acetyl-Coa Synthetase, R584a Mutation Length = 652 2e-24
2p2m_A652 Acetyl-Coa Synthetase, R194a Mutation Length = 652 2e-24
2p2q_A652 Acetyl-Coa Synthetase, R584e Mutation Length = 652 2e-24
2p2f_A652 Acetyl-coa Synthetase, Wild-type With Acetate, Amp, 2e-24
2p2j_A652 Acetyl-Coa Synthetase, K609a Mutation Length = 652 2e-24
1pg3_A652 Acetyl Coa Synthetase, Acetylated On Lys609 Length 7e-24
3o82_A544 Structure Of Base N-Terminal Domain From Acinetobac 8e-24
1ry2_A663 Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe 2e-23
2wd9_A569 Crystal Structure Of Human Acyl-coa Synthetase Medi 3e-23
3b7w_A570 Crystal Structure Of Human Acyl-Coa Synthetase Medi 3e-23
1t5h_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE 1e-22
3vnq_A544 Co-crystal Structure Of Nrps Adenylation Protein Cy 2e-17
4gr5_A570 Crystal Structure Of Slgn1deltaasub In Complex With 3e-17
1amu_A563 Phenylalanine Activating Domain Of Gramicidin Synth 8e-15
3dhv_A512 Crystal Structure Of Dlta Protein In Complex With D 3e-14
3fcc_A512 Crystal Structure Of Dlta Protein In Complex With A 3e-14
3kxw_A590 The Crystal Structure Of Fatty Acid Amp Ligase From 5e-14
3pbk_A583 Structural And Functional Studies Of Fatty Acyl-Ade 2e-13
2vsq_A 1304 Structure Of Surfactin A Synthetase C (Srfa-C), A N 1e-12
3e7w_A511 Crystal Structure Of Dlta: Implications For The Rea 3e-12
3l8c_A521 Structure Of Probable D-Alanine--Poly(Phosphoribito 2e-11
4dg8_A 620 Structure Of Pa1221, An Nrps Protein Containing Ade 1e-08
4gr4_A469 Crystal Structure Of Slgn1deltaasub Length = 469 2e-08
3e53_A480 Crystal Structure Of N-Terminal Domain Of A Fatty A 2e-06
3t5a_A480 Crystal Structure Of N-Terminal Domain Of Faal28 G3 3e-06
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 Back     alignment and structure 
Iteration: 1

 Score =  311 bits (796), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 182/471 (38%), Positives = 284/471 (60%), Gaps = 16/471 (3%)
Query: 66  SRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSICLAIF 125
           S+  LI+ A  +  TYA +  + R +ASGL + +G+++GDV+ +  P+S   P   LA  
Sbjct: 37  SKPCLINGANGDVYTYADVELTARRVASGL-NKIGIQQGDVIMLFLPSS---PEFVLAFL 92
Query: 126 SL---GAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV--NVPIIVTSRDQS 180
                GAI++ AN  +T +E+ K  + S AKL+I+ +   +K+        + V   D +
Sbjct: 93  GASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSA 152
Query: 181 NNKSVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIM--Q 238
            +  +   EL +  +  +E P   ++ DD  A+ YSSGTTG  KGV+LTH   I+ +  Q
Sbjct: 153 PDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQ 210
Query: 239 LLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTY 298
           +     ++     D+ LC++PMFHIY L          G  I++M +F++ +++  I+ Y
Sbjct: 211 VDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKY 270
Query: 299 QVNNIPLVPPVILGLVKYCK-DSSYLTSLRRVGSGAAPLSKELADEFRAKFPWVELRQGY 357
           +V+  P+VPPV++ + K    D   L+SLR + SG APL KEL D  RAKFP   L QGY
Sbjct: 271 KVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330
Query: 358 GLTESCG--ATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSP 415
           G+TE+    A     + +    + G+CG +      K+VD ET  +LP  Q GE+ ++  
Sbjct: 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD 390
Query: 416 TIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELE 475
            IM+GY  + EAT+   D++GWL TGD+ Y D +  L+IVDR+KELIK+ G+QVAPAELE
Sbjct: 391 QIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELE 450
Query: 476 AVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
           A+L++HP I DAAV+ L+DE+AG++P+A+VV++  SQ TED++ Q+++ Q+
Sbjct: 451 ALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQV 501
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 Back     alignment and structure
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 Back     alignment and structure
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 Back     alignment and structure
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 Back     alignment and structure
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 Back     alignment and structure
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 Back     alignment and structure
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 Back     alignment and structure
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 Back     alignment and structure
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 Back     alignment and structure
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 Back     alignment and structure
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 Back     alignment and structure
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 Back     alignment and structure
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 Back     alignment and structure
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 Back     alignment and structure
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 Back     alignment and structure
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 Back     alignment and structure
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 Back     alignment and structure
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 Back     alignment and structure
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 Back     alignment and structure
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 Back     alignment and structure
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 Back     alignment and structure
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 Back     alignment and structure
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 Back     alignment and structure
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 Back     alignment and structure
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 Back     alignment and structure
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 Back     alignment and structure
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 Back     alignment and structure
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 Back     alignment and structure
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 Back     alignment and structure
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 Back     alignment and structure
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 Back     alignment and structure
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 Back     alignment and structure
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 Back     alignment and structure
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 Back     alignment and structure
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 Back     alignment and structure
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 Back     alignment and structure
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 Back     alignment and structure
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 Back     alignment and structure
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 Back     alignment and structure
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 Back     alignment and structure
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 Back     alignment and structure
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 Back     alignment and structure
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 Back     alignment and structure
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 Back     alignment and structure
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 Back     alignment and structure
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 Back     alignment and structure
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 Back     alignment and structure
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 Back     alignment and structure
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 Back     alignment and structure
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 Back     alignment and structure
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 Back     alignment and structure
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 Back     alignment and structure
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620 Back     alignment and structure
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 Back     alignment and structure
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480 Back     alignment and structure
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query526
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 0.0
3ni2_A536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 0.0
2d1s_A548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 0.0
3rix_A550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 0.0
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 1e-179
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 1e-146
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 1e-145
3ivr_A509 Putative long-chain-fatty-acid COA ligase; structu 1e-136
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 1e-135
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 1e-135
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 1e-127
2v7b_A529 Benzoate-coenzyme A ligase; benzoate oxidation, be 1e-126
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 1e-125
3rg2_A 617 Enterobactin synthase component E (ENTE), 2,3-DIH 1e-124
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 1e-122
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 1e-90
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 7e-83
3etc_A580 AMP-binding protein; adenylate-forming acyl-COA sy 4e-75
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 3e-65
3kxw_A590 Saframycin MX1 synthetase B; fatty acid AMP ligase 2e-64
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 6e-58
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 3e-36
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 2e-34
3fce_A512 D-alanine--poly(phosphoribitol) ligase subunit 1; 5e-34
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 3e-33
4dg8_A 620 PA1221; ANL superfamily, adenylation domain, pepti 4e-33
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 1e-29
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 4e-29
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 6e-28
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 2e-20
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 3e-19
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 1e-06
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 4e-06
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 Back     alignment and structure
 Score =  640 bits (1653), Expect = 0.0
 Identities = 188/539 (34%), Positives = 296/539 (54%), Gaps = 23/539 (4%)

Query: 1   MSADISEEQTGKSSGSKFPNSGFDSETGIYHSLIQLGENYRIPTRTDLDTATCVLSRFPH 60
             A ++ ++   S   +   S  ++   I+ S +    +  IP    L         F +
Sbjct: 20  HMARMAPQEQAVSQVME-KQSNNNNSDVIFRSKL---PDIYIPNHLSLHDYI-----FQN 70

Query: 61  PDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLLYPSI 120
                ++  LI+  T    TY+ +H   R +A+   H LGV + DVV +L PN   +   
Sbjct: 71  ISEFATKPCLINGPTGHVYTYSDVHVISRQIAANF-HKLGVNQNDVVMLLLPNCPEFVLS 129

Query: 121 CLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKV----NVPIIVTS 176
            LA    GA  + AN   T +EI KQ + S  KLII+ +  + K+  +     V I+   
Sbjct: 130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCID 189

Query: 177 RDQSNNKS---VSVEELIECC-DAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHAN 232
            ++S       +   EL +   +A++ +   +++ DD  A+ YSSGTTG  KGV+LTH  
Sbjct: 190 DNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKG 249

Query: 233 FIS-IMQLLRWTVDVTHAQ-NDIFLCMIPMFHIYGLAFFATGLFCCGVTIVVMQRFDLQA 290
            ++ + Q +       +   +D+ LC++PMFHIY L          G  I++M +F++  
Sbjct: 250 LVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINL 309

Query: 291 MIEAIKTYQVNNIPLVPPVILGLVKYCKDSSY-LTSLRRVGSGAAPLSKELADEFRAKFP 349
           ++E I+  +V   P+VPP++L + K  +   Y L+S+R V SGAAPL KEL D   AKFP
Sbjct: 310 LLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFP 369

Query: 350 WVELRQGYGLTESCGAT--TFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPPYQR 407
             +L QGYG+TE+      +   + +    +SG+CG +      K+VD +T  +L   Q 
Sbjct: 370 NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP 429

Query: 408 GELWLKSPTIMRGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGY 467
           GE+ ++   IM+GY  N  ATA   D+DGWL TGD+   D +  L+IVDR+KELIK+ G+
Sbjct: 430 GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGF 489

Query: 468 QVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTEDQVMQFVTSQL 526
           QVAPAELEA+L+ HP+I D AV+ +++E AG++P+A+VV++  S+L+ED V QFV+ Q+
Sbjct: 490 QVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQV 548
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 Back     alignment and structure
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 Back     alignment and structure
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
3ni2_A536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 100.0
2d1s_A548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 100.0
3rix_A550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 100.0
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 100.0
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 100.0
3etc_A580 AMP-binding protein; adenylate-forming acyl-COA sy 100.0
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 100.0
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 100.0
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 100.0
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 100.0
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 100.0
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 100.0
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 100.0
3fce_A512 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 100.0
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 100.0
3ivr_A509 Putative long-chain-fatty-acid COA ligase; structu 100.0
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 100.0
4gr5_A570 Non-ribosomal peptide synthetase; MBTH-like domain 100.0
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
3rg2_A 617 Enterobactin synthase component E (ENTE), 2,3-DIH 100.0
2v7b_A529 Benzoate-coenzyme A ligase; benzoate oxidation, be 100.0
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 100.0
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
4dg8_A 620 PA1221; ANL superfamily, adenylation domain, pepti 100.0
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 100.0
3kxw_A590 Saframycin MX1 synthetase B; fatty acid AMP ligase 100.0
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 100.0
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 100.0
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 100.0
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 100.0
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 100.0
4gs5_A358 Acyl-COA synthetase (AMP-forming)/AMP-acid ligase 100.0
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 100.0
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 100.0
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 100.0
3lax_A109 Phenylacetate-coenzyme A ligase; structural genomi 99.2
3gxs_A109 Phenylacetate-coenzyme A ligase; APC62324.1, struc 99.17
4eql_A581 4-substituted benzoates-glutamate ligase GH3.12; f 99.1
4b2g_A609 GH3-1 auxin conjugating enzyme; signaling protein, 99.08
4epl_A581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 98.92
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 91.31
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 90.82
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 89.6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Back     alignment and structure
Probab=100.00  E-value=2.4e-80  Score=644.74  Aligned_cols=486  Identities=38%  Similarity=0.642  Sum_probs=419.7

Q ss_pred             ceeecCCCCCCCCCCCCCCCCChhhhhcccCCCCCCCCCceEEEeCCCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 041055           28 GIYHSLIQLGENYRIPTRTDLDTATCVLSRFPHPDLAESRVALIDSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVV  107 (526)
Q Consensus        28 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V  107 (526)
                      .++.+..   ++..+|.+  .++++++.++ ++.+|  +++|+++..+++++||+||.++++++|++|.+ +|+++||+|
T Consensus         7 ~i~~~~~---~~~~~p~~--~~l~~~l~~~-a~~~p--~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V   77 (536)
T 3ni2_A            7 FIFRSKL---PDIYIPKN--LPLHSYVLEN-LSNHS--SKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVI   77 (536)
T ss_dssp             CCBCCSS---CCCCCCSS--CCHHHHHTTT-GGGST--TSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred             eEEecCC---CCCCCCCC--CcHHHHHHHH-hhcCC--CceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence            3455554   34445533  7899999888 67777  79999997667899999999999999999998 999999999


Q ss_pred             EEECCCCCchHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHHHhhc----CCCCEEEEcCCCCCCC
Q 041055          108 FVLAPNSLLYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTK----VNVPIIVTSRDQSNNK  183 (526)
Q Consensus       108 ~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~i~~~~~~~~~~  183 (526)
                      +++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+..    ...+++.++..  ...
T Consensus        78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  155 (536)
T 3ni2_A           78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSA--PDG  155 (536)
T ss_dssp             EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCC--CTT
T ss_pred             EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCC--CCC
Confidence            999999999999999999999999999999999999999999999999999876554432    24455554432  223


Q ss_pred             cchHHHHhhhcCCCCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHHHhhhh--cccCCCCcEEEEeCChh
Q 041055          184 SVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQLLRWTV--DVTHAQNDIFLCMIPMF  261 (526)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~--~~~~~~~~~~l~~~p~~  261 (526)
                      ...+.++......  ..+.....++++++|+|||||||.||||+++|+++.+.+.......  .+...+++++++.+|++
T Consensus       156 ~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~  233 (536)
T 3ni2_A          156 CLHFSELTQADEN--EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMF  233 (536)
T ss_dssp             CEETHHHHTSCGG--GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTT
T ss_pred             ccCHHHHhhcccc--ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChH
Confidence            3444444332211  1222256789999999999999999999999999988776644321  12367899999999999


Q ss_pred             HHHHHHHHHHhhcccCcEEEEecCCCHHHHHHHHHhcCccEeecccHHHHHHHhh-ccCCCCCCCceEEEEecCCCCHHH
Q 041055          262 HIYGLAFFATGLFCCGVTIVVMQRFDLQAMIEAIKTYQVNNIPLVPPVILGLVKY-CKDSSYLTSLRRVGSGAAPLSKEL  340 (526)
Q Consensus       262 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-~~~~~~l~~lr~v~~gG~~l~~~~  340 (526)
                      |.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++. .....+++++|.+++||+++++++
T Consensus       234 h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~  313 (536)
T 3ni2_A          234 HIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKEL  313 (536)
T ss_dssp             SHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHH
T ss_pred             HHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHH
Confidence            9999977788899999999999999999999999999999999999999999987 345678999999999999999999


Q ss_pred             HHHHHHhCCCCceeeccccccccceeecccC--cccccCCCCcccccCCCcEEEEEeCCCCccCCCCCcceEEEeccccc
Q 041055          341 ADEFRAKFPWVELRQGYGLTESCGATTFMVS--PKQARARSGSCGALSPTFYAKVVDTETRLALPPYQRGELWLKSPTIM  418 (526)
Q Consensus       341 ~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~--~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gel~v~~~~~~  418 (526)
                      .+++++.+|++++++.||+||++.+++.+..  .......++++|+|+++++++|+|+++++++++|+.|||+|+||+++
T Consensus       314 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~  393 (536)
T 3ni2_A          314 EDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIM  393 (536)
T ss_dssp             HHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSC
T ss_pred             HHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccc
Confidence            9999999999999999999999877655421  12222347899999999999999998999999999999999999999


Q ss_pred             cccCCCHHHHhcccCCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhcCCCcccEEEEeeeCCCCC
Q 041055          419 RGYFGNEEATAAAFDEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAG  498 (526)
Q Consensus       419 ~gy~~~~~~t~~~~~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~  498 (526)
                      +|||++|+.|.+.|+.+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|++++++..|
T Consensus       394 ~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g  473 (536)
T 3ni2_A          394 KGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG  473 (536)
T ss_dssp             SEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTE
T ss_pred             hhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeCCCCCCCHHHHHHHHHhcC
Q 041055          499 QIPMAYVVRAAGSQLTEDQVMQFVTSQL  526 (526)
Q Consensus       499 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l  526 (526)
                      +.++|+|+..++...++++|+++|+++|
T Consensus       474 ~~~~a~vv~~~~~~~~~~~l~~~l~~~l  501 (536)
T 3ni2_A          474 EVPVAFVVKSEKSQATEDEIKQYISKQV  501 (536)
T ss_dssp             EEEEEEEEECTTCCCCHHHHHHHHHTTS
T ss_pred             ceeEEEEEecCCCCCCHHHHHHHHHHhc
Confidence            9999999999988899999999999875
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Back     alignment and structure
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Back     alignment and structure
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Back     alignment and structure
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} Back     alignment and structure
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Back     alignment and structure
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} Back     alignment and structure
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 526
d1pg4a_643 e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en 1e-113
d1lcia_541 e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali 1e-102
d1v25a_534 e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 1e-99
d1ry2a_640 e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast 2e-99
d1amua_514 e.23.1.1 (A:) Phenylalanine activating domain of g 4e-83
d3cw9a1503 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc 6e-77
d1mdba_536 e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B 2e-74
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  348 bits (894), Expect = e-113
 Identities = 114/508 (22%), Positives = 210/508 (41%), Gaps = 50/508 (9%)

Query: 60  HPDLAESRVALI----DSATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSL 115
           + D    R A+I    D++  + ++Y +LHR +   A+ L   LG++KGDVV +  P   
Sbjct: 85  NGD----RTAIIWEGDDTSQSKHISYRELHRDVCRFANTL-LDLGIKKGDVVAIYMPMVP 139

Query: 116 LYPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQKLTKVNVP---- 171
                 LA   +GA+ S      +   +   + DS ++L+I+A E ++    + +     
Sbjct: 140 EAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVD 199

Query: 172 -------------IIVTSRDQSNNKSVSVEELI---ECCDAADELPGCQLTQDDTAAILY 215
                        +IV  R  S+       +L        A+ E     +  +D   ILY
Sbjct: 200 DALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILY 259

Query: 216 SSGTTGTSKGVILTHANFI-SIMQLLRWTVDVTHAQNDIFLCMIPMFHIYGLAFFATGLF 274
           +SG+TG  KGV+ T   ++       ++  D      DI+ C   +  + G ++   G  
Sbjct: 260 TSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH--PGDIYWCTADVGWVTGHSYLLYGPL 317

Query: 275 CCGVTIVVMQ----RFDLQAMIEAIKTYQVNNIPLVPPVILGLVKYCK---DSSYLTSLR 327
            CG T ++ +          M + +  +QVN +   P  I  L+       + +  +SLR
Sbjct: 318 ACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLR 377

Query: 328 RVGSGAAPLSKELADEFRAKF--PWVELRQGYGLTESCGATTFMVSPKQARARSGSCGAL 385
            +GS   P++ E  + +  K       +   +  TE+ G     + P     ++GS    
Sbjct: 378 ILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPL-PGAIELKAGSATRP 436

Query: 386 SPTFYAKVVDTETRLALPPYQRGELWLKS--PTIMRGYFGNEEATAAAFDE--DGWLKTG 441
                  +VD E          G L +    P   R  FG+ E     +         +G
Sbjct: 437 FFGVQPALVDNEGHP-QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSG 495

Query: 442 DLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLSHPNILDAAVIPLEDEEAGQIP 501
           D    D +G+ +I  R+ +++  +G+++  AE+E+ L++HP I +AAV+ +     GQ  
Sbjct: 496 DGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAI 555

Query: 502 MAYVVRAAGSQLTED---QVMQFVTSQL 526
            AYV    G + + +   +V  +V  ++
Sbjct: 556 YAYVTLNHGEEPSPELYAEVRNWVRKEI 583
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 Back     information, alignment and structure
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 Back     information, alignment and structure
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query526
d1pg4a_643 Acetyl-CoA synthetase {Salmonella enterica [TaxId: 100.0
d1lcia_541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 100.0
d1ry2a_640 Acetyl-CoA synthetase {Baker's yeast (Saccharomyce 100.0
d1v25a_534 Long chain fatty acid-CoA ligase TT0168 {Thermus t 100.0
d1amua_514 Phenylalanine activating domain of gramicidin synt 100.0
d1mdba_536 Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil 100.0
d3cw9a1503 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId 100.0
d1v25a_ 534 Long chain fatty acid-CoA ligase TT0168 {Thermus t 81.7
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=8.7e-76  Score=618.66  Aligned_cols=477  Identities=25%  Similarity=0.362  Sum_probs=394.2

Q ss_pred             CCCCCCCCChhhhhcccCCCCCCCCCceEEEeC----CCCceeCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCc
Q 041055           41 RIPTRTDLDTATCVLSRFPHPDLAESRVALIDS----ATHERVTYAQLHRSIRSLASGLYHALGVRKGDVVFVLAPNSLL  116 (526)
Q Consensus        41 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~~gl~~gd~V~i~~~n~~~  116 (526)
                      .+.++..+|+.+.++++.++.++  |++|++..    ++.+++||+||.+++.++|++|++ +|+++||+|+++++|+++
T Consensus        64 ~wf~~~~~N~~~n~ldrh~~~~~--d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~-~Gv~~Gd~V~i~~~n~~e  140 (643)
T d1pg4a_          64 KWYEDGTLNLAANCLDRHLQENG--DRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPE  140 (643)
T ss_dssp             EESTTCEECHHHHHTGGGHHHHT--TSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHH
T ss_pred             eeCCCChhhHHHHHHHHHHHhCC--CCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecccchH
Confidence            34456678998887766344455  89999842    234689999999999999999998 999999999999999999


Q ss_pred             hHHHHHHHHHcCCEEccCCCCCCHHHHHHHHHhcCCeEEEEcchhHH-------------Hhhc---CCCC-EEEEcCCC
Q 041055          117 YPSICLAIFSLGAILSPANSINTESEIVKQVRDSGAKLIISASEELQ-------------KLTK---VNVP-IIVTSRDQ  179 (526)
Q Consensus       117 ~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-------------~~~~---~~~~-~i~~~~~~  179 (526)
                      +++++|||+++|++++|+++.++.+++.+++++++++++|+++....             .+..   .... ++++....
T Consensus       141 ~iv~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~  220 (643)
T d1pg4a_         141 AAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTG  220 (643)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSC
T ss_pred             HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCC
Confidence            99999999999999999999999999999999999999999764211             1111   1222 33333322


Q ss_pred             CCCC-----cchHHHHhhhcCCCCCCCCCCCCCCCEEEEEcCCCCCCCchHHHhhhHHHHHHHHH-HhhhhcccCCCCcE
Q 041055          180 SNNK-----SVSVEELIECCDAADELPGCQLTQDDTAAILYSSGTTGTSKGVILTHANFISIMQL-LRWTVDVTHAQNDI  253 (526)
Q Consensus       180 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~  253 (526)
                      ....     ............  ...+....+++++++|+|||||||.||||+++|++++..... ....+.  +.++|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~--~~~~d~  296 (643)
T d1pg4a_         221 SDIDWQEGRDLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD--YHPGDI  296 (643)
T ss_dssp             CCCCCCBTTEEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTT--CCTTCE
T ss_pred             cccccccccchhhhhhhcccC--cccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhC--CCCCCE
Confidence            1111     111222222211  222223567899999999999999999999999997654433 444444  678999


Q ss_pred             EEEeCChhHHHHHHHHHHhhcccCcEEEEecC----CCHHHHHHHHHhcCccEeecccHHHHHHHhhc---cCCCCCCCc
Q 041055          254 FLCMIPMFHIYGLAFFATGLFCCGVTIVVMQR----FDLQAMIEAIKTYQVNNIPLVPPVILGLVKYC---KDSSYLTSL  326 (526)
Q Consensus       254 ~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~~~~l~~l  326 (526)
                      +++.+|++|++|+...++.+++.|+++++.+.    +++..+++.++++++|+++++|++++.|++..   ....++++|
T Consensus       297 ~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sL  376 (643)
T d1pg4a_         297 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL  376 (643)
T ss_dssp             EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTC
T ss_pred             EEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCce
Confidence            99999999999987777889999999999753    48899999999999999999999999998872   346789999


Q ss_pred             eEEEEecCCCCHHHHHHHHHhCC--CCceeeccccccccceeecccCcccccCCCCcccccCCCcEEEEEeCCCCccCCC
Q 041055          327 RRVGSGAAPLSKELADEFRAKFP--WVELRQGYGLTESCGATTFMVSPKQARARSGSCGALSPTFYAKVVDTETRLALPP  404 (526)
Q Consensus       327 r~v~~gG~~l~~~~~~~~~~~~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~  404 (526)
                      |.++++|+++++++.+++.+.++  ++.+++.||+||+++.++...+... ....+++|+|++|++++|+| ++|++++.
T Consensus       377 r~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~-~~~~gs~G~p~~g~~v~ivd-~~g~~~~~  454 (643)
T d1pg4a_         377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAI-ELKAGSATRPFFGVQPALVD-NEGHPQEG  454 (643)
T ss_dssp             CEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTC-CBCTTCCBSBCTTCCEEEEC-TTCCBCCS
T ss_pred             EEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCcc-CCCCCccccccCCCEEEEEC-CCCCCCCC
Confidence            99999999999999999999984  5789999999999876665433222 23378999999999999999 56889999


Q ss_pred             CCcceEEEec--cccccccCCCHHHHhccc--CCCCeeeccceEEEcCCCcEEEEccccceEEecCeeeChHHHHHHHhc
Q 041055          405 YQRGELWLKS--PTIMRGYFGNEEATAAAF--DEDGWLKTGDLCYFDGEGFLYIVDRIKELIKHNGYQVAPAELEAVLLS  480 (526)
Q Consensus       405 g~~Gel~v~~--~~~~~gy~~~~~~t~~~~--~~~~~~~TGD~~~~~~~G~l~~~GR~~d~ik~~G~~v~~~eIE~~l~~  480 (526)
                      |+.|||+|+|  |+++.|||++++.+.+.+  ..+|||+|||+|++|+||+|+++||+||+||++|++|+|.|||++|.+
T Consensus       455 g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~  534 (643)
T d1pg4a_         455 ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVA  534 (643)
T ss_dssp             SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred             CceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHh
Confidence            9999999999  578999999999888765  458999999999999999999999999999999999999999999999


Q ss_pred             CCCcccEEEEeeeCCCCCceEEEEEEeCCCCCCCH---HHHHHHHHhcC
Q 041055          481 HPNILDAAVIPLEDEEAGQIPMAYVVRAAGSQLTE---DQVMQFVTSQL  526 (526)
Q Consensus       481 ~~~v~~~~vv~~~~~~~~~~~~a~vv~~~~~~~~~---~~l~~~l~~~l  526 (526)
                      ||.|.||+|++++++..|+.++|||+++++...++   ++|+++|+++|
T Consensus       535 ~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L  583 (643)
T d1pg4a_         535 HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEI  583 (643)
T ss_dssp             STTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999988776   47999998875
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Back     information, alignment and structure
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure