Citrus Sinensis ID: 041076

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
MCSSKDKVTTGMNEATPTMVAKINGRPVLQPTCNRVPSKLDRRNTLNKAPPPPPTLPLPTSIKPNKPAAPLVLTCPAESKSPRPQAIKRGNDLNSSSEKVVTPRSNIRTLERKKSKSFKEGGNVERTAALMMSTNTSTYSSSLIMDSPGSIAAVRREQMALQHAQRKMRIAHYGRSKSAKFESKVVPLFDPNNNNAARSTPTTGEQQEEKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRHLPCTLLAAAPYKRPNNDQEPTTPTTATPTL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHccccccccccccccccccccccc
ccccccEEEEcccccccccEEEEccccccccccccccccHHHHHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccHHHHHcHHHcccccccccccccccccEEEEcHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEcccEccccccccccccccccccccccccccccccccccccEEEEEccHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccHHccccccHHHHHHHHHHHHccccEccHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccc
mcsskdkvttgmneatPTMVAkingrpvlqptcnrvpskldrrntlnkappppptlplptsikpnkpaaplvltcpaesksprpqaikrgndlnsssekvvtprsnirtlerkksksfkeggnveRTAALMMSTntstyssslimdspgsIAAVRREQMALQHAQRKMRIahygrsksakfeskvvplfdpnnnnaarstpttgeqqeeKRCSFitaysdpifvayhdeewgvpvrndnMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSidmsrvrgvvdnsnriLEVKRVFGSFEKYIWGFvnhkpistqykfghkipvktsksesiSKDMVRRGFRFVGPTVVHSFMQaagltndhliichrhlpctllaaapykrpnndqepttpttatptl
mcsskdkvttgmneatptmvakingrpvlqptcnrvpskldrrntlnkappppptlplptsikpNKPAAPLVLTcpaesksprpqaikrgndlnsssekvvtprsnirtlerkksksfkeggnvertaALMMSTNTSTYSSSLIMDSPGSIAAVRREQMALQHAQRKMRIAHYGRSKSAKFEskvvplfdpnnnnaarstpttgeqqeEKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAEtvaklsdkqmMSISTeysidmsrvrgvvdnsnrILEVKRVFGSFEKYIWGFVNHkpistqykfghkipvktsksesiskdMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRHLPCTLLAAApykrpnndqepttpttatptl
MCSSKDKVTTGMNEATPTMVAKINGRPVLQPTCNRVPSKLDRRNTLNKAppppptlplptSIKPNKPAAPLVLTCPAESKSPRPQAIKRGNDLNSSSEKVVTPRSNIRTLERKKSKSFKEGGNVERTAALMMstntstysssLIMDSPGSIAAVRREQMALQHAQRKMRIAHYGRSKSAKFESKVVPLFDPNNNNAARSTPTTGEQQEEKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRHLPCTLLAAAPYKRPNNDQEpttpttatptL
*******************************************************************************************************************************************************************************************************************CSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKL*****MSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPV**********DMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRHLPCTLLAAAP********************
*******************VAKINGRPVLQPTC*********************************************************************************************************************************************************************************RCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRHLPC***************************
**********GMNEATPTMVAKINGRPVLQPTCNRVPSKLDRRNTLNKAPPPPPTLPLPTSIKPNKPAAPLVLTCPAESKSPRPQAIKRG***************NIRTLERKKSKSFKEGGNVERTAALMMSTNTSTYSSSLIMDSPGSIAAVRRE*************AHYGRSKSAKFESKVVPLFDPNNNNA**************RCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRHLPCTLLAAAPYKRP****************
***SKDKVTTGMNEATPTMVAKINGRPVLQPTCNRVPSKL*R*******************************************************************************************TNTSTYSSSLIMDSPGSIAAVRREQMALQHAQRKMRIAHYGRSKSAKFESKVVP**********************KRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRHLPCTLLAA**********************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCSSKDKVTTGMNEATPTMVAKINGRPVLQPTCNRVPSKLDRRNTLNKAPPPPPTLPLPTSIKPNKPAAPLVLTCPAESKSPRPQAIKRGNDLNSSSEKVVTPRSNIRTLERKKSKSFKEGGNVERTAALMMSTNTSTYSSSLIMDSPGSIAAVRREQMALQHAQRKMRIAHYGRSKSAKFESKVVPLFDPNNNNAARSTPTTGEQQEEKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRHLPCTLLAAAPYKRPNNDQEPTTPTTATPTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query420 2.2.26 [Sep-21-2011]
Q7VG78 1375 Probable GMP synthase [gl yes no 0.435 0.133 0.388 4e-36
P05100187 DNA-3-methyladenine glyco N/A no 0.419 0.941 0.377 5e-36
P44321185 DNA-3-methyladenine glyco yes no 0.421 0.956 0.356 3e-30
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1 Back     alignment and function desciption
 Score =  152 bits (385), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 73/188 (38%), Positives = 111/188 (59%), Gaps = 5/188 (2%)

Query: 207 QEEKRCSFITAYSDP---IFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKR 263
           +E+ RC++ T   +    ++  YHD EWG P+  D  LFE LVL G Q G  W +ILKKR
Sbjct: 783 REKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWITILKKR 842

Query: 264 QGFRDAFSGFEAETVAKLSDKQMMSISTEYSI--DMSRVRGVVDNSNRILEVKRVFGSFE 321
           + FR AF  F+   VA   + ++  +     I  + +++   + N+   + V+R FGSF+
Sbjct: 843 EAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAVQREFGSFD 902

Query: 322 KYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTN 381
           KYIWGFV  KPI   ++    +P  T  S+ I+KD+ +RGF+FVG T +++ MQ+ G+ N
Sbjct: 903 KYIWGFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYAMMQSIGMVN 962

Query: 382 DHLIICHR 389
           DHL  C +
Sbjct: 963 DHLTSCFK 970
Catalyzes the synthesis of GMP from XMP.
Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 2
>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1 Back     alignment and function description
>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
356557064400 PREDICTED: probable GMP synthase [glutam 0.902 0.947 0.688 1e-150
356525726400 PREDICTED: probable GMP synthase [glutam 0.895 0.94 0.703 1e-150
224101295403 predicted protein [Populus trichocarpa] 0.933 0.972 0.697 1e-149
356526407400 PREDICTED: uncharacterized protein LOC10 0.914 0.96 0.697 1e-148
224109118401 predicted protein [Populus trichocarpa] 0.909 0.952 0.683 1e-148
356554796398 PREDICTED: uncharacterized protein LOC10 0.911 0.962 0.682 1e-147
255549509404 DNA-3-methyladenine glycosylase, putativ 0.916 0.952 0.690 1e-144
357451295390 DNA-3-methyladenine glycosylase [Medicag 0.909 0.979 0.669 1e-141
388497972390 unknown [Medicago truncatula] 0.909 0.979 0.669 1e-140
449444308400 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.871 0.915 0.639 1e-132
>gi|356557064|ref|XP_003546838.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max] Back     alignment and taxonomy information
 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 289/420 (68%), Positives = 324/420 (77%), Gaps = 41/420 (9%)

Query: 1   MCSSKDKVTTGMNEATPTM--------VAKINGRPVLQPTCNRVPSKLDRRNTLNKAPPP 52
           MC SK KVT G+               VA+INGRPVLQPTCNRVP+ L+RRN++ K  P 
Sbjct: 1   MCGSKTKVTIGLEVIAAAATTTTAKPSVARINGRPVLQPTCNRVPN-LERRNSIKKVAPA 59

Query: 53  PPTLPL------PTSIKPNKPAAPLVLTCPAESKSPRPQAIKRGND---LNSSSEKVVTP 103
               P        TS+ P  P +P       +SKSPR  A KRGND   LNSS EK+V P
Sbjct: 60  KSLSPPSPPLPSKTSLTP--PVSP-------KSKSPRLPATKRGNDNNGLNSSYEKIVIP 110

Query: 104 RSNIRT--LERKKSKSFKEGGNVERTAALMMSTNTSTYSSSLIMDSPGSIAAVRREQMAL 161
           RS+I+T  LERKKSKSFKEG  V  +    +S     YSSSLI DSPGSIAAVRREQMAL
Sbjct: 111 RSSIKTPTLERKKSKSFKEGSCVSASIEASLS-----YSSSLITDSPGSIAAVRREQMAL 165

Query: 162 QHAQRKMRIAHYGRSKSAKFESKVVPLFDPNNNNAARSTPTTGEQQEEKRCSFITAYSDP 221
           Q AQRKM+IAHYGRSKSAKFE +VVPL DP+N + A S PT    +EEKRCSFITA SDP
Sbjct: 166 QQAQRKMKIAHYGRSKSAKFE-RVVPL-DPSNTSLA-SKPT----EEEKRCSFITANSDP 218

Query: 222 IFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKL 281
           I++AYHDEEWGVPV +D MLFELLVLSGAQVGSDWTS LKKR  FR AFS F+AETVA L
Sbjct: 219 IYIAYHDEEWGVPVHDDKMLFELLVLSGAQVGSDWTSTLKKRLDFRAAFSEFDAETVANL 278

Query: 282 SDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGH 341
           +DKQMMSIS+EY ID+SRVRGVVDN+N+ILE+K+ FGSF+KYIWGFVNHKP+STQYKFGH
Sbjct: 279 TDKQMMSISSEYGIDISRVRGVVDNANQILEIKKDFGSFDKYIWGFVNHKPLSTQYKFGH 338

Query: 342 KIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRHLPCTLLAAAPY 401
           KIPVKTSKSESISKDMVRRGFR+VGPTVVHSFMQA+GLTNDHLI CHRHL CTLLAA  +
Sbjct: 339 KIPVKTSKSESISKDMVRRGFRYVGPTVVHSFMQASGLTNDHLITCHRHLQCTLLAARSF 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi|356525726|ref|XP_003531474.1| PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Glycine max] Back     alignment and taxonomy information
>gi|224101295|ref|XP_002312220.1| predicted protein [Populus trichocarpa] gi|118486806|gb|ABK95238.1| unknown [Populus trichocarpa] gi|222852040|gb|EEE89587.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526407|ref|XP_003531809.1| PREDICTED: uncharacterized protein LOC100793991 [Glycine max] Back     alignment and taxonomy information
>gi|224109118|ref|XP_002315089.1| predicted protein [Populus trichocarpa] gi|222864129|gb|EEF01260.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356554796|ref|XP_003545728.1| PREDICTED: uncharacterized protein LOC100793449 [Glycine max] Back     alignment and taxonomy information
>gi|255549509|ref|XP_002515807.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] gi|223545076|gb|EEF46588.1| DNA-3-methyladenine glycosylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357451295|ref|XP_003595924.1| DNA-3-methyladenine glycosylase [Medicago truncatula] gi|355484972|gb|AES66175.1| DNA-3-methyladenine glycosylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388497972|gb|AFK37052.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449444308|ref|XP_004139917.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218536 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
TAIR|locus:2087710312 AT3G12710 [Arabidopsis thalian 0.735 0.990 0.598 1.9e-92
TAIR|locus:2156329353 AT5G44680 [Arabidopsis thalian 0.571 0.679 0.621 1.5e-91
TAIR|locus:1006230719311 AT1G13635 [Arabidopsis thalian 0.464 0.627 0.492 6.3e-53
TAIR|locus:2174373347 AT5G57970 [Arabidopsis thalian 0.516 0.625 0.466 4e-51
TAIR|locus:2037268329 AT1G75090 [Arabidopsis thalian 0.442 0.565 0.5 1.7e-50
TAIR|locus:2025697327 AT1G80850 [Arabidopsis thalian 0.438 0.562 0.510 3.6e-50
TAIR|locus:2200447352 AT1G15970 [Arabidopsis thalian 0.438 0.522 0.516 6.7e-49
TIGR_CMR|GSU_0567191 GSU_0567 "DNA-3-methyladenine 0.426 0.937 0.431 8.4e-42
TIGR_CMR|CBU_0383212 CBU_0383 "DNA-3-methyladenine 0.428 0.849 0.391 2.9e-39
TIGR_CMR|CPS_2351194 CPS_2351 "DNA-3-methyladenine 0.419 0.907 0.437 1.2e-35
TAIR|locus:2087710 AT3G12710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 194/324 (59%), Positives = 230/324 (70%)

Query:    79 SKSPRPQAIKRGNDLNSSSEKVVTPRSNIRTLERKKSKSFKEGGNVERTAALMMXXXXXX 138
             SK+      KRG    SS   ++    +++      + + K  G++ER  +         
Sbjct:     2 SKTEAISLTKRGMLPPSSCNSLMDRSESLKRDSVMGNGAAKVRGSLERKKSKSFKEGDSY 61

Query:   139 XXXXLIMDSPGSIAAVRREQMALQHAQRKMRIAHYGRSKSA-KF-ESKVVPLFDPNNNNA 196
                 LI ++PGSIAAVRREQ+A Q A RK++IAHYGRSKS   F  SKVVPL +PN N  
Sbjct:    62 SSW-LITEAPGSIAAVRREQVAAQQALRKLKIAHYGRSKSTINFTSSKVVPLLNPNPN-- 118

Query:   197 ARSTPTTGEQQEEKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDW 256
                 P        +RCSF+T  SDPI+VAYHDEEWGVPV +D  LFELL LSGAQVGSDW
Sbjct:   119 ----P------HPQRCSFLTPTSDPIYVAYHDEEWGVPVHDDKTLFELLTLSGAQVGSDW 168

Query:   257 TSILKKRQGFRDAFSGFEAETVAKLSDKQMMSISTEYSIDMSRVRGVVDNSNRILEVKRV 316
             TS L+KR  +R AF  FEAE VAKL++K+M +IS EY I+MS+VRGVV+N+ +I+E+K+ 
Sbjct:   169 TSTLRKRHDYRKAFMEFEAEVVAKLTEKEMNAISIEYKIEMSKVRGVVENAKKIVEIKKA 228

Query:   317 FGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQA 376
             F S EKY+WGFVNHKPIST YK GHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQA
Sbjct:   229 FVSLEKYLWGFVNHKPISTNYKLGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQA 288

Query:   377 AGLTNDHLIICHRHLPCTLLAAAP 400
             AGLTNDHLI C RH PCTLLA  P
Sbjct:   289 AGLTNDHLITCCRHAPCTLLATNP 312
GO:0003824 "catalytic activity" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA;ISS
GO:0006284 "base-excision repair" evidence=IEA
GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS
GO:0006306 "DNA methylation" evidence=RCA
TAIR|locus:2156329 AT5G44680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230719 AT1G13635 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174373 AT5G57970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037268 AT1G75090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025697 AT1G80850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200447 AT1G15970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0567 GSU_0567 "DNA-3-methyladenine glycosylase I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0383 CBU_0383 "DNA-3-methyladenine glycosidase I" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2351 CPS_2351 "DNA-3-methyladenine glycosylase I" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.20LOW CONFIDENCE prediction!
3rd Layer3.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.VIII.1335.1
hypothetical protein (370 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
pfam03352179 pfam03352, Adenine_glyco, Methyladenine glycosylas 2e-91
COG2818188 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA 4e-63
TIGR00624179 TIGR00624, tag, DNA-3-methyladenine glycosylase I 6e-46
PRK10353187 PRK10353, PRK10353, 3-methyl-adenine DNA glycosyla 6e-45
>gnl|CDD|190612 pfam03352, Adenine_glyco, Methyladenine glycosylase Back     alignment and domain information 
 Score =  273 bits (701), Expect = 2e-91
 Identities = 87/176 (49%), Positives = 124/176 (70%), Gaps = 2/176 (1%)

Query: 217 AYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAE 276
           A SDP++VAYHDEEWGVPV +D  LFELL L G Q G  W +ILKKR+ FR+AF+GF+ E
Sbjct: 2   ATSDPLYVAYHDEEWGVPVHDDRKLFELLCLEGFQAGLSWITILKKREAFREAFAGFDPE 61

Query: 277 TVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPIS 334
            VA  ++  +  +  +  I  +R  +   ++N+  IL+++  FGSF  Y+W FV+ KPI 
Sbjct: 62  KVAAFTEADVERLLADPGIIRNRLKIEATINNARAILKLQEEFGSFSAYLWSFVDGKPIV 121

Query: 335 TQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIICHRH 390
            ++K   ++P KT  S++ISKD+ +RGF+FVGPT+V++FMQA G+ NDHL+ C RH
Sbjct: 122 NRWKSLAEVPAKTPLSDAISKDLKKRGFKFVGPTIVYAFMQAVGMVNDHLVDCFRH 177

The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA. Length = 179
>gnl|CDD|225374 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129711 TIGR00624, tag, DNA-3-methyladenine glycosylase I Back     alignment and domain information
>gnl|CDD|182401 PRK10353, PRK10353, 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 420
PRK10353187 3-methyl-adenine DNA glycosylase I; Provisional 100.0
TIGR00624179 tag DNA-3-methyladenine glycosylase I. This family 100.0
COG2818188 Tag 3-methyladenine DNA glycosylase [DNA replicati 100.0
PF03352179 Adenine_glyco: Methyladenine glycosylase; InterPro 100.0
TIGR01083191 nth endonuclease III. This equivalog model identif 95.87
TIGR03252177 uncharacterized HhH-GPD family protein. This model 95.59
cd00056158 ENDO3c endonuclease III; includes endonuclease III 95.38
smart00478149 ENDO3c endonuclease III. includes endonuclease III 95.24
PRK13913218 3-methyladenine DNA glycosylase; Provisional 95.16
PRK10702211 endonuclease III; Provisional 94.29
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 93.5
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 88.14
PRK10880 350 adenine DNA glycosylase; Provisional 86.49
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 85.58
PRK01229208 N-glycosylase/DNA lyase; Provisional 83.27
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.6e-83  Score=591.93  Aligned_cols=181  Identities=37%  Similarity=0.775  Sum_probs=177.0

Q ss_pred             CCCCcCccCCCChhhhhhhhcCCCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 041076          209 EKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMS  288 (420)
Q Consensus       209 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIer  288 (420)
                      |.||.|++  +||+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||+||||++||+|+|+|||+
T Consensus         1 m~rC~W~~--~~~l~~~YHD~eWG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~   78 (187)
T PRK10353          1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_pred             CCCCCCCC--CChHHHHhhhccCCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            46999985  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcChhH--HHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccc
Q 041076          289 ISTEYSIDM--SRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVG  366 (420)
Q Consensus       289 Ll~D~gIIR--~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVG  366 (420)
                      ||+|++|||  +||+|||+|||++++|++|||||++|||+||+++||++++....++|++|++|++|||+||||||+|||
T Consensus        79 Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~ylW~fv~~~p~~~~~~~~~~~P~~t~~S~~lskdLKkrGFkFvG  158 (187)
T PRK10353         79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVG  158 (187)
T ss_pred             HhcCchhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhccCCCcccCCccchhcCCCCCHHHHHHHHHHHHcCCcccC
Confidence            999999996  799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhcccccccccccccc
Q 041076          367 PTVVHSFMQAAGLTNDHLIICHRHL  391 (420)
Q Consensus       367 PTtvYSFMQAiGlVNDHl~~C~~~~  391 (420)
                      |||||+||||+||||||+++|+++.
T Consensus       159 pt~~ysfmqA~G~vndH~~~C~~~~  183 (187)
T PRK10353        159 TTICYSFMQACGLVNDHVVGCCCHP  183 (187)
T ss_pred             cHHHHHHHHHHCCccccccCccccC
Confidence            9999999999999999999999883

>TIGR00624 tag DNA-3-methyladenine glycosylase I Back     alignment and domain information
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3 Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
1lmz_A187 Solution Structure Of 3-Methyladenine Dna Glycosyla 6e-37
2ofk_A183 Crystal Structure Of 3-Methyladenine Dna Glycosylas 7e-35
2ofi_A184 Crystal Structure Of 3-Methyladenine Dna Glycosylas 4e-33
4aia_A188 The Structural Basis Of 3-Methyladenine Recognition 8e-32
2jg6_A186 Crystal Structure Of A 3-Methyladenine Dna Glycosyl 9e-32
4ai4_A188 Crystal Structure Of E38q Mutant Of 3-Methyladenine 9e-32
4ai5_A188 Crystal Structure Of Y16f Of 3-Methyladenine Dna Gl 3e-31
>pdb|1LMZ|A Chain A, Solution Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 187 Back     alignment and structure 
Iteration: 1

 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 111/180 (61%), Gaps = 4/180 (2%)
Query: 210 KRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDA 269
           +RC +++   DP+++AYHD EWGVP  +   LFE++ L G Q G  W ++LKKR+ +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 270 FSGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGF 327
           F  F+   VA + ++ +  +  +  I   R  ++ ++ N+   L++++    F  ++W F
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119
Query: 328 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
           VNH+P  TQ     +IP  T  S+++SK + +RGF+FVG T+ +SFMQA GL NDH++ C
Sbjct: 120 VNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179
>pdb|2OFK|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 183 Back     alignment and structure
>pdb|2OFI|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Bound To Dna3MA Length = 184 Back     alignment and structure
>pdb|4AIA|A Chain A, The Structural Basis Of 3-Methyladenine Recognition By 3-Methyladenine Dna Glycosylase I (Tag) From Staphylococcus Aureus Length = 188 Back     alignment and structure
>pdb|2JG6|A Chain A, Crystal Structure Of A 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 186 Back     alignment and structure
>pdb|4AI4|A Chain A, Crystal Structure Of E38q Mutant Of 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 188 Back     alignment and structure
>pdb|4AI5|A Chain A, Crystal Structure Of Y16f Of 3-Methyladenine Dna Glycosylase I (Tag) In Complex With 3-Methyladenine Length = 188 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 8e-99
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 2e-98
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Length = 183 Back     alignment and structure
 Score =  291 bits (748), Expect = 8e-99
 Identities = 66/183 (36%), Positives = 109/183 (59%), Gaps = 4/183 (2%)

Query: 210 KRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDA 269
           +RC +++   DP+++AYHD EWGVP  +   LFE++ L G Q G  W ++LKKR+ +R  
Sbjct: 2   QRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 270 FSGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGF 327
           F  F+   +A + ++ +  +     I   R  ++ ++ N+   L +++   SF  ++W F
Sbjct: 60  FHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSF 119

Query: 328 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
           V+ +P  TQ     KIP  T  S++++K + +RGF+FVG T+ +SFMQA GL NDH+  C
Sbjct: 120 VDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITGC 179

Query: 388 HRH 390
             H
Sbjct: 180 FCH 182
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Length = 186 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 100.0
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 100.0
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 97.41
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 96.72
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 96.32
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 96.22
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 96.18
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 96.04
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 95.96
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 95.1
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 94.97
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 94.96
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 94.67
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 94.63
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 93.56
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 92.96
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 92.76
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 92.57
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 88.65
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 84.43
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Back     alignment and structure
Probab=100.00  E-value=5.5e-87  Score=614.59  Aligned_cols=182  Identities=34%  Similarity=0.711  Sum_probs=177.6

Q ss_pred             CCCCcCccCCCChhhhhhhhcCCCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 041076          209 EKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMS  288 (420)
Q Consensus       209 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIer  288 (420)
                      |+||.|++  +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||.|+|+|||+
T Consensus         1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~   78 (186)
T 2jg6_A            1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR   78 (186)
T ss_dssp             CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence            57999985  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcChhH--HHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccc
Q 041076          289 ISTEYSIDM--SRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVG  366 (420)
Q Consensus       289 Ll~D~gIIR--~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVG  366 (420)
                      ||+|++|||  +||+|+|+|||++++|++|||||++|||+|++++||+|++.+..++|++|++|++||||||||||+|||
T Consensus        79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG  158 (186)
T 2jg6_A           79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG  158 (186)
T ss_dssp             HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred             HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence            999999985  799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccccccccccccc
Q 041076          367 PTVVHSFMQAAGLTNDHLIICHRHLP  392 (420)
Q Consensus       367 PTtvYSFMQAiGlVNDHl~~C~~~~~  392 (420)
                      |||||+||||+||||||+++|+++.+
T Consensus       159 pt~~YafmQA~G~vndH~~~C~~~~~  184 (186)
T 2jg6_A          159 PVTVFSFLEAAGLYDAHLKDCPSKPK  184 (186)
T ss_dssp             HHHHHHHHHHTTSEECCCTTCTTCCC
T ss_pred             hHHHHHHHHHhcccCccccCccccCC
Confidence            99999999999999999999988743
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 420
d1nkua_187 a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (T 9e-73
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Length = 187 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

 Score =  224 bits (572), Expect = 9e-73
 Identities = 67/183 (36%), Positives = 112/183 (61%), Gaps = 4/183 (2%)

Query: 210 KRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDA 269
           +RC +++   DP+++AYHD EWGVP  +   LFE++ L G Q G  W ++LKKR+ +R  
Sbjct: 2   ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 270 FSGFEAETVAKLSDKQMMSISTEYSIDMSR--VRGVVDNSNRILEVKRVFGSFEKYIWGF 327
           F  F+   VA + ++ +  +  +  I   R  ++ ++ N+   L++++    F  ++W F
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119

Query: 328 VNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLIIC 387
           VNH+P  TQ     +IP  T  S+++SK + +RGF+FVG T+ +SFMQA GL NDH++ C
Sbjct: 120 VNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179

Query: 388 HRH 390
             +
Sbjct: 180 CCY 182

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 96.17
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 96.05
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 95.21
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 94.19
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 94.08
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 92.46
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 91.76
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 80.58
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-83  Score=590.73  Aligned_cols=182  Identities=36%  Similarity=0.752  Sum_probs=178.7

Q ss_pred             CCCCcCccCCCChhhhhhhhcCCCcccCChHHHHHHHHHHHHhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 041076          209 EKRCSFITAYSDPIFVAYHDEEWGVPVRNDNMLFELLVLSGAQVGSDWTSILKKRQGFRDAFSGFEAETVAKLSDKQMMS  288 (420)
Q Consensus       209 ~~RC~W~~~~~dply~~YHD~EWG~Pv~DDr~LFEmL~LEgFQAGLSW~tVLkKReafReAF~gFDpekVA~~~EedIer  288 (420)
                      |+||.|++  +||+|++|||+|||+|+|||+.|||+||||+|||||||.+||+||++||+||+||||++||.|+|+|||+
T Consensus         1 ~~RC~W~~--~~~~~~~YHD~eWG~p~~dD~~LFE~L~Le~fQaGLsW~~IL~Kr~~fr~aF~~Fd~~~vA~~~e~~ie~   78 (187)
T d1nkua_           1 MERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVER   78 (187)
T ss_dssp             CCCCSSCC--SCHHHHHHHHHSSSSCCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHTCCHHHHHH
T ss_pred             CCCCCCCC--CChHHHHHHhccCCCcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCHHHHHcCCHHHHHH
Confidence            68999985  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcChhH--HHHHHHHhhHHHHHHHHHhhCCHhHhccccCCCcccccccccCCCCCCCChHHHHHHHHHHHcCCcccc
Q 041076          289 ISTEYSIDM--SRVRGVVDNSNRILEVKRVFGSFEKYIWGFVNHKPISTQYKFGHKIPVKTSKSESISKDMVRRGFRFVG  366 (420)
Q Consensus       289 Ll~D~gIIR--~KI~AVI~NAraiL~I~~E~GSF~~yLWsFv~~kpI~~~~~~~~~iP~~T~lS~~LSKdLKKrGFkFVG  366 (420)
                      ||+|++|||  +||+|||+|||++++|++|+|||++|||+|++++|+++++.+..+||++|++|++|||+|||+||+|||
T Consensus        79 Ll~d~~IIRNr~KI~Avi~NAr~~l~i~~e~gsf~~~lw~f~~~~p~~~~~~~~~~ip~~t~~s~~lsk~LKk~GfkFvG  158 (187)
T d1nkua_          79 LVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVG  158 (187)
T ss_dssp             HHTCCSSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTCCEECCCSSGGGSCSCCHHHHHHHHHHHHHTCCCCC
T ss_pred             HhccCCeeechHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCcCCCccCHHHhhcCCHHHHHHHHHHHhcCCeecC
Confidence            999999985  799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhccccccccccccccc
Q 041076          367 PTVVHSFMQAAGLTNDHLIICHRHLP  392 (420)
Q Consensus       367 PTtvYSFMQAiGlVNDHl~~C~~~~~  392 (420)
                      ||||||||||+||||||+++|++|..
T Consensus       159 pt~~ysfmqa~G~vndH~~~C~~~~~  184 (187)
T d1nkua_         159 TTICYSFMQACGLVNDHVVGCCCYPG  184 (187)
T ss_dssp             HHHHHHHHHHHTSEECCCSSSSSCCS
T ss_pred             hHHHHHHHHHcCCcCcccCCCCCCCC
Confidence            99999999999999999999999865
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure