Citrus Sinensis ID: 041085

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MVHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE
Secondary Structure (PSIPRED)
ccEEEcccccccccccHHcccccEEEcccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHccccccccccHHHHccccccccccccHHHHHHHccccccccccccccccccccEEccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccEEEEEccccccEEEEEEccccccHHHHcHHHHHHHHHccccccccccEEcccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccccHHHcccccHHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHccccccccHHHHHHHcccHEEEEcccccccccccEEcccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHcccccEEEEEccccccEEEEEccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvhwlfsgRAVYSAFLCEcrkgfsyqqkfgLVNVKlkwakdksLDAVVAAEKDLRAACFLVSIIssashcfvpiyhlcrhrgqlglpqdlklstfirrypnifceshvldsggtrvpcfgltpeaadVHHEGLNALQQNQKDILDRLCKLLMLTrdrmlplqtidqlkwdmglpydycdylitrhpelfslvrlpddrvglkllswdddLAVSQLQKNAVLQQKQEdirsnslafpirftrgfglKRKCMEWLKewqslpytspytdashldprtdvsekRIVGVFHELLHLTIRKKTE
Flexible Loop (DISEMBL)
mvhwlfsgRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVlqqkqedirsnslafpirftRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFhellhltirkkte
Low Complexity Region (SEG)
MVHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE
Disordered region (IsUnstruct)
*VHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQK*EDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTI*****
Disordered Region (DISOPRED)
*VHW****RAV**AFLCECRKGFSY**********LKWAKDKSLDAVVAAEKDLRAACFLVSIISS*S*******HLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQL****************SLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKK**
Disordered Region (DISEMBL)
MVHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE
Disordered Region (DISPRO)
*VHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKT*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
255583846	404	conserved hypothetical protein [Ricinus	1.0	0.740	0.745	1e-130
225433742	428	PREDICTED: uncharacterized protein LOC10	1.0	0.698	0.755	1e-129
118489241	413	unknown [Populus trichocarpa x Populus d	1.0	0.723	0.753	1e-125
224069030	413	predicted protein [Populus trichocarpa]	0.959	0.694	0.770	1e-125
356525399	425	PREDICTED: uncharacterized protein LOC10	0.996	0.701	0.722	1e-124
356544656	402	PREDICTED: uncharacterized protein LOC10	0.956	0.711	0.723	1e-121
357519459	389	hypothetical protein MTR_8g089370 [Medic	0.996	0.766	0.662	1e-115
449441530	423	PREDICTED: uncharacterized protein LOC10	0.996	0.704	0.674	1e-112
449496781	423	PREDICTED: uncharacterized protein LOC10	0.996	0.704	0.674	1e-111
15238875	422	ubiquitin carboxyl-terminal hydrolase-li	0.973	0.689	0.627	1e-102

>gi|255583846|ref|XP_002532674.1| conserved hypothetical protein [Ricinus communis] gi|223527587|gb|EEF29702.1| conserved hypothetical protein [Ricinus communis]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/299 (74%), Positives = 249/299 (83%)

Query: 1   MVHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFL 60
           MV      R     FLC CR+GF+YQQ F LVNVKLKW KD++LD +VA + DL+A C L
Sbjct: 1   MVFLSLLSREQGFQFLCRCRRGFNYQQTFSLVNVKLKWVKDRALDTLVAGQTDLKATCLL 60

Query: 61  VSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFG 120
            SIISSA  C +PIYHL  HR QL LP DLKLSTFIRRYP IF ESH+LDSGGTRVPCF 
Sbjct: 61  TSIISSAPLCCLPIYHLTPHRRQLCLPHDLKLSTFIRRYPTIFQESHILDSGGTRVPCFQ 120

Query: 121 LTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDY 180
           LTPEA+++H E    LQQNQ D++ RLCKLLMLT+DR+LPLQTIDQLKWD+GLPYDYC+ 
Sbjct: 121 LTPEASNIHKEEFQILQQNQMDLIQRLCKLLMLTKDRILPLQTIDQLKWDLGLPYDYCNT 180

Query: 181 LITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFT 240
           LI  HP+LFS VRLPDDR+GLKL  WDD LAVSQLQKNA  QQK+ED++S  LAFPIRFT
Sbjct: 181 LIPNHPDLFSSVRLPDDRIGLKLQMWDDTLAVSQLQKNAAFQQKEEDVKSGCLAFPIRFT 240

Query: 241 RGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE 299
           RGFGLKRKCMEWL+EWQSLPYTSPY+DASHLDPRTDVSEKRIVGVFHELLHLTI+KKTE
Sbjct: 241 RGFGLKRKCMEWLEEWQSLPYTSPYSDASHLDPRTDVSEKRIVGVFHELLHLTIQKKTE 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433742|ref|XP_002267271.1| PREDICTED: uncharacterized protein LOC100263505 [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/299 (75%), Positives = 253/299 (84%)

Query: 1   MVHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFL 60
           MV WL  GRA  S FL   ++GF YQQKF LVNVKLKW KD++LDAVVA E++LRA C L
Sbjct: 1   MVWWLLLGRAGVSGFLYVHQRGFIYQQKFSLVNVKLKWVKDRALDAVVAGERNLRATCTL 60

Query: 61  VSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFG 120
           VSIISS  H   PIY L RHRGQLGLP D+KL+TFIRR+PNIF E HVLDSGGTRVP F 
Sbjct: 61  VSIISSDPHDGFPIYRLSRHRGQLGLPHDIKLATFIRRFPNIFDEFHVLDSGGTRVPWFR 120

Query: 121 LTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDY 180
           LTPEA ++HHE LNALQQN+ D+L+RL KLLMLT +RMLPLQTIDQLKWD GLPYDYC  
Sbjct: 121 LTPEALNLHHEALNALQQNEMDLLNRLRKLLMLTCERMLPLQTIDQLKWDFGLPYDYCHS 180

Query: 181 LITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFT 240
           L+  +PELFS+V LPDDRVGLKL+SWDD LAVSQLQKNA   QK+ED+R+  L FPIRFT
Sbjct: 181 LVPSYPELFSMVHLPDDRVGLKLISWDDRLAVSQLQKNAAFNQKEEDVRNGCLTFPIRFT 240

Query: 241 RGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE 299
           RGFGLKRKCM+WL+EWQ LPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLT++K+TE
Sbjct: 241 RGFGLKRKCMKWLEEWQMLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTLQKRTE 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489241|gb|ABK96426.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/300 (75%), Positives = 249/300 (83%), Gaps = 1/300 (0%)

Query: 1   MVHWLFSGRAVY-SAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACF 59
           MV  L   + V  S FL   R G++YQQKF LVNVKLKW KD+ LDAVVA + DL+AAC 
Sbjct: 1   MVFLLLLKKGVGCSNFLGAFRTGYNYQQKFSLVNVKLKWVKDRVLDAVVADQADLKAACI 60

Query: 60  LVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCF 119
           LVSIISSA  C +PIY L  HRGQLGLP DLKLSTFIRRYPNIFCESHVLDSGGTRVPCF
Sbjct: 61  LVSIISSARGCCLPIYRLRLHRGQLGLPHDLKLSTFIRRYPNIFCESHVLDSGGTRVPCF 120

Query: 120 GLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCD 179
            LT EA D+  E L  L+QNQ D+++RLCKLLMLTRDR LPLQTIDQL+WDMGLPYDY D
Sbjct: 121 QLTAEALDLRREELGILEQNQIDLVERLCKLLMLTRDRTLPLQTIDQLRWDMGLPYDYFD 180

Query: 180 YLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRF 239
            LI  HP+LFS VRLPDDRVGLKL  WDD LAVSQLQKNA LQQK+ED+++  LAFP+ F
Sbjct: 181 SLIPLHPDLFSSVRLPDDRVGLKLQVWDDRLAVSQLQKNAALQQKEEDMKNGCLAFPVGF 240

Query: 240 TRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE 299
           TRGFGLKRKCMEWL+EWQ LPYTSPY+DAS LDPRTDVSEKRIVGVFHELLHLT+ K+TE
Sbjct: 241 TRGFGLKRKCMEWLEEWQRLPYTSPYSDASDLDPRTDVSEKRIVGVFHELLHLTVHKRTE 300

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069030|ref|XP_002302883.1| predicted protein [Populus trichocarpa] gi|222844609|gb|EEE82156.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/287 (77%), Positives = 243/287 (84%)

Query: 13  SAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFV 72
           S FL   R G++YQQKF LVNVKLKW KD+ LDAVVA + DL+AAC LVSIISSA  C +
Sbjct: 14  SNFLGAFRTGYNYQQKFSLVNVKLKWVKDRVLDAVVADQADLKAACILVSIISSARGCCL 73

Query: 73  PIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEG 132
           PIY L  HRGQLGLP DLKLSTFIRRYPNIFCESHVLDSGGTRVPCF LT EA D+  E 
Sbjct: 74  PIYRLRLHRGQLGLPHDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFQLTAEALDLRREE 133

Query: 133 LNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLV 192
           L  L+QNQ D+++RLCKLLMLTRDR LPLQTIDQL+WDMGLPYDY D LI  HP+LFS V
Sbjct: 134 LGILEQNQIDLVERLCKLLMLTRDRTLPLQTIDQLRWDMGLPYDYFDSLIPLHPDLFSSV 193

Query: 193 RLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEW 252
           RLPDDRVGLKL  WDD LAVSQLQKNA  QQK+ED+++  LAFP+ FTRGFGLKRKCMEW
Sbjct: 194 RLPDDRVGLKLQVWDDRLAVSQLQKNAAFQQKEEDMKNGCLAFPVGFTRGFGLKRKCMEW 253

Query: 253 LKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE 299
           L+EWQ LPYTSPY+DAS LDPRTDVSEKRIVGVFHELLHLT+ K+TE
Sbjct: 254 LEEWQRLPYTSPYSDASDLDPRTDVSEKRIVGVFHELLHLTVHKRTE 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525399|ref|XP_003531312.1| PREDICTED: uncharacterized protein LOC100794689 [Glycine max]

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/299 (72%), Positives = 247/299 (82%), Gaps = 1/299 (0%)

Query: 1   MVHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFL 60
           M HWLF G A    F+   ++G+ YQQKF LVN+KLKW KD++LDAVV  ++DL+AA  L
Sbjct: 1   MFHWLF-GIARNFGFVRGYQQGYIYQQKFSLVNIKLKWVKDRTLDAVVTGQRDLKAAGIL 59

Query: 61  VSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFG 120
           VSII S+S C +PIYHL RHRGQLGLP DLKLSTFIRRYPNIF ES  LDSGG+ VPCF 
Sbjct: 60  VSIIYSSSECCLPIYHLSRHRGQLGLPSDLKLSTFIRRYPNIFNESSFLDSGGSPVPCFS 119

Query: 121 LTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDY 180
           L+PEA ++HHE +N LQQNQ ++ DRLCKLLMLT DR+LPLQTIDQLKWD+GLPYDY   
Sbjct: 120 LSPEALELHHEEVNILQQNQLELRDRLCKLLMLTSDRILPLQTIDQLKWDLGLPYDYQHS 179

Query: 181 LITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFT 240
            +  HPE F  VRLPDDR+GLKLL WDD LA+S+LQKN  LQQK EDI++ SLAFPI FT
Sbjct: 180 FVPNHPESFLYVRLPDDRIGLKLLFWDDKLAISELQKNTSLQQKAEDIKNGSLAFPISFT 239

Query: 241 RGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE 299
           RGFGLKRKCMEWLK+WQ LPYTSPY +ASHLDPRTDVSEKRIVGVFHELLHLT+ K+TE
Sbjct: 240 RGFGLKRKCMEWLKDWQKLPYTSPYINASHLDPRTDVSEKRIVGVFHELLHLTLHKQTE 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544656|ref|XP_003540764.1| PREDICTED: uncharacterized protein LOC100794629, partial [Glycine max]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/286 (72%), Positives = 237/286 (82%)

Query: 14  AFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVP 73
            F+   ++G+ YQQKF LVN+KLKW KD++LDAVV  ++DL+A   LVSII S+S C +P
Sbjct: 2   GFVRGYQQGYIYQQKFSLVNIKLKWVKDRTLDAVVTGQRDLKAVGILVSIIYSSSECCLP 61

Query: 74  IYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGL 133
           IYHL RHRGQLGLP DLKLSTFIRRYPNIF ES  LDSGG+ VPCF L+PEA ++HHE +
Sbjct: 62  IYHLSRHRGQLGLPSDLKLSTFIRRYPNIFNESSFLDSGGSPVPCFSLSPEALELHHEEV 121

Query: 134 NALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVR 193
           N LQQNQ ++ DRLCKLLMLT DR+LPLQTIDQLKWD+GLPYDY    +  HPE F  VR
Sbjct: 122 NILQQNQLELRDRLCKLLMLTSDRILPLQTIDQLKWDLGLPYDYQHSFVPNHPESFLYVR 181

Query: 194 LPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWL 253
           LPDDR+GLKLL WDD LA+ +LQKN  LQQK EDI++ SL FPI FTRGFGLKRKCMEWL
Sbjct: 182 LPDDRIGLKLLFWDDKLAIPELQKNTSLQQKAEDIKNGSLEFPISFTRGFGLKRKCMEWL 241

Query: 254 KEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE 299
           KEWQ LPYTSPY +ASHLDPRTDVSEKRIVGVFHELLHLT+ K+TE
Sbjct: 242 KEWQKLPYTSPYINASHLDPRTDVSEKRIVGVFHELLHLTLHKQTE 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519459|ref|XP_003630018.1| hypothetical protein MTR_8g089370 [Medicago truncatula] gi|355524040|gb|AET04494.1| hypothetical protein MTR_8g089370 [Medicago truncatula]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/299 (66%), Positives = 239/299 (79%), Gaps = 1/299 (0%)

Query: 1   MVHWLFSGRAVYSAFLCECRKGFSYQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACFL 60
           M   LFS    Y  FL   ++G+ Y QKF LVN+KLKW KD+++D+VV  ++DL+AA  L
Sbjct: 1   MFRSLFSSARNY-GFLDSVQQGYIYLQKFSLVNIKLKWVKDRTMDSVVVGKRDLKAAGIL 59

Query: 61  VSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFG 120
           VS+I S+S  +VPIY L RHRGQLGLP ++KL+ FIRRYPN+F ES+ LDSGG+ VPCFG
Sbjct: 60  VSVIYSSSEDYVPIYRLSRHRGQLGLPDEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFG 119

Query: 121 LTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDY 180
           L+ EA  +H E ++ L++N  +  DRLCKLLMLTRD MLPLQTIDQLKWD+GLPYDY D 
Sbjct: 120 LSSEAMKIHREEVDILRENSLEFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDS 179

Query: 181 LITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFT 240
            +  HPE FS VRLPD RVGLKLL WDD LAVS+L+KNA LQQ+ EDI++ +LAFP+ FT
Sbjct: 180 FVMNHPEKFSFVRLPDVRVGLKLLFWDDKLAVSELEKNASLQQQVEDIKNGTLAFPVSFT 239

Query: 241 RGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE 299
           RGFG+KRK MEWL+EWQ LPYTSPY DASHLD RTDVSEKR+VGVFHELLHLT+ K+TE
Sbjct: 240 RGFGMKRKSMEWLREWQKLPYTSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTE 298

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441530|ref|XP_004138535.1| PREDICTED: uncharacterized protein LOC101209849 [Cucumis sativus]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/301 (67%), Positives = 240/301 (79%), Gaps = 3/301 (0%)

Query: 1   MVHWLFSGRAVYSAFLCECRKGFS--YQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAAC 58
           MV WLFS R   S FLC+ ++G +  Y Q   LVN++LKW KDK LD VV+AEKDL+A C
Sbjct: 1   MVAWLFS-RLKLSGFLCKNQRGLNLNYLQGRYLVNIRLKWVKDKDLDTVVSAEKDLKAVC 59

Query: 59  FLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPC 118
           FLVSIISS+    +P+YHL RHR QLG+P D+K+STFIRRYP+IF ESH+LDS GTRVP 
Sbjct: 60  FLVSIISSSPEHCLPVYHLRRHRRQLGIPNDVKMSTFIRRYPSIFHESHILDSAGTRVPS 119

Query: 119 FGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYC 178
           F LTPEA ++H E +  L+Q   D+  RLC+LLMLT    LPLQTIDQL+WDMGLPYDY 
Sbjct: 120 FCLTPEARELHAEQIIVLRQCWTDLRSRLCRLLMLTSGCTLPLQTIDQLRWDMGLPYDYQ 179

Query: 179 DYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIR 238
           +  I  + ++FS +RL D R+GLKLL WD+DLAVS+LQKNA  QQ +EDIR+  LAFPI 
Sbjct: 180 NSFIPYNHDMFSFIRLQDHRIGLKLLKWDNDLAVSELQKNAASQQMEEDIRNGYLAFPIG 239

Query: 239 FTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKT 298
           FTRGFGL RKCM+WLKEWQ+LPYTSPY DASHLDPRTDVSEKRIVGVFHELLHLT++KKT
Sbjct: 240 FTRGFGLNRKCMDWLKEWQTLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKT 299

Query: 299 E 299
           E
Sbjct: 300 E 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496781|ref|XP_004160225.1| PREDICTED: uncharacterized protein LOC101230715 [Cucumis sativus]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/301 (67%), Positives = 238/301 (79%), Gaps = 3/301 (0%)

Query: 1   MVHWLFSGRAVYSAFLCECRKGFS--YQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAAC 58
           MV WLFS R   S F C+ ++G +  Y Q   LVN++LKW KDK LD VV+AEKDL+A C
Sbjct: 1   MVAWLFS-RLKLSGFSCKNQRGLNLNYLQGRYLVNIRLKWVKDKDLDTVVSAEKDLKAVC 59

Query: 59  FLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPC 118
           FLVSIISS+    +P+YHL RHR QLG+P D+K+STFIRRYP+IF ESH+LDS GTRVP 
Sbjct: 60  FLVSIISSSPEHCLPVYHLRRHRRQLGIPNDVKMSTFIRRYPSIFHESHILDSAGTRVPS 119

Query: 119 FGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYC 178
           F LTPEA ++H E +  L+Q   D+  RLC+LLMLT    LPLQTIDQL+WDMGLPYDY 
Sbjct: 120 FCLTPEARELHEEQIIVLRQCWTDLRSRLCRLLMLTSGCTLPLQTIDQLRWDMGLPYDYQ 179

Query: 179 DYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIR 238
           +  I  +  LFS +RL D R+GLKLL WD+DLAVS+LQKNA  QQ +EDIR+  LAFPI 
Sbjct: 180 NSFIPYNHHLFSFIRLQDHRIGLKLLKWDNDLAVSELQKNAASQQMEEDIRNGYLAFPIG 239

Query: 239 FTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKT 298
           FTRGFGL RKCM+WLKEWQ+LPYTSPY DASHLDPRTDVSEKRIVGVFHELLHLT++KKT
Sbjct: 240 FTRGFGLNRKCMDWLKEWQTLPYTSPYCDASHLDPRTDVSEKRIVGVFHELLHLTLQKKT 299

Query: 299 E 299
           E
Sbjct: 300 E 300

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238875|ref|NP_199615.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gi|10177755|dbj|BAB11068.1| unnamed protein product [Arabidopsis thaliana] gi|55740679|gb|AAV63932.1| hypothetical protein At5g48040 [Arabidopsis thaliana] gi|332008230|gb|AED95613.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/301 (62%), Positives = 229/301 (76%), Gaps = 10/301 (3%)

Query: 2   VHWLFSGRAVYSAFLCECRKGFS--YQQKFGLVNVKLKWAKDKSLDAVVAAEKDLRAACF 59
           +HWL   R   S  LC+CR+ F   YQQ+ GLVNVKLKW KD+ LDAVV  EK LRA C 
Sbjct: 1   MHWLLQRRVSLSTSLCKCRERFDFFYQQRCGLVNVKLKWVKDRELDAVVVREKHLRAVCN 60

Query: 60  LVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCF 119
           LVS+IS++    +PI+ L  HRGQLGLPQ+LKLS FIRRYPNIF E    DS GT VPCF
Sbjct: 61  LVSVISASPDLRLPIFKLLPHRGQLGLPQELKLSAFIRRYPNIFVEHCYWDSAGTSVPCF 120

Query: 120 GLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCD 179
           GLT E  D+++E ++  + N++D+L RLCKLLMLT +R L L +ID L+WD+GLPYDY D
Sbjct: 121 GLTRETIDLYYEEVDVSRVNERDVLVRLCKLLMLTCERTLSLHSIDHLRWDLGLPYDYRD 180

Query: 180 YLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQKNAVLQQKQEDIRSNS-LAFPIR 238
            LIT+HP+LFSLV+L  D  GLKL+ WD+ LAVSQ+       Q +ED+ ++  +AFP++
Sbjct: 181 SLITKHPDLFSLVKLSSDLDGLKLIHWDEHLAVSQM-------QLREDVGNDERMAFPVK 233

Query: 239 FTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKT 298
           FTRGFGLKRK +EWL+EWQ LPYTSPY DASHLDPRTD+SEKR VGVFHELLHLTI KKT
Sbjct: 234 FTRGFGLKRKSIEWLQEWQRLPYTSPYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKT 293

Query: 299 E 299
           E
Sbjct: 294 E 294

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
TAIR|locus:2012981	470	AT1G71850 "AT1G71850" [Arabido	0.862	0.548	0.350	2.3e-39
TAIR|locus:2064940	387	WTF9 "AT2G39120" [Arabidopsis	0.889	0.687	0.333	5.7e-36
TAIR|locus:4515103321	528	WTF1 "what's this factor?" [Ar	0.872	0.494	0.291	9.3e-26
TAIR|locus:2207380	413	AT1G79120 [Arabidopsis thalian	0.819	0.593	0.313	1.7e-22
TAIR|locus:2138738	395	AT4G08940 [Arabidopsis thalian	0.692	0.524	0.297	2.6e-20
TAIR|locus:504955534	409	RPD1 "ROOT PRIMORDIUM DEFECTIV	0.846	0.618	0.272	4.2e-19
TAIR|locus:2009230	390	AT1G06440 [Arabidopsis thalian	0.682	0.523	0.285	2.7e-18
TAIR|locus:2042561	415	AT2G31290 [Arabidopsis thalian	0.806	0.580	0.296	2.2e-14
TAIR|locus:2166305	494	emb1692 "embryo defective 1692	0.856	0.518	0.290	2.5e-14

TAIR|locus:2012981 AT1G71850 "AT1G71850" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 94/268 (35%), Positives = 151/268 (56%)

Query:    37 KWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFI 96
             K+ +D+ LD  V  EK+LR    +  +I S     VPI  +   +  L +P  L+   FI
Sbjct:    30 KFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVP--LRPIEFI 87

Query:    97 RRYPNIFCESHVLDSGGTRV-PCFGLTPEAA--DVHHEGLNALQQNQKDILDRLCKLLML 153
             R +P++F E      GG  + P   LTPE    D   + +   +  ++ + DRL KLLM+
Sbjct:    88 RSFPSVFQE---FLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMI 144

Query:   154 TRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVR--LPDDRVGLKLLSWDDDLA 211
              R   +PL+ +D LKWD+GLP DY + ++   P+ F +++  L      L+L+ W ++ A
Sbjct:   145 NRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGELELVCWSNEHA 204

Query:   212 VSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHL 271
             VS L+K A   +K E  + +++AFP++F+ GF + +K  +W+ +WQ LPY SPY +A HL
Sbjct:   205 VSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYENALHL 264

Query:   272 DPRTDVSEKRIVGVFHELLHLTIRKKTE 299
                +D S+K    V HE+++L + KK E
Sbjct:   265 SATSDESDKWAAAVLHEIMNLFVSKKVE 292

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2064940 WTF9 "AT2G39120" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 92/276 (33%), Positives = 150/276 (54%)

Query:    27 QKFGLVNVKLKWAKDKSLDAV--VAAEKDLRAACFLVS-IISSASHCFVPIYHLCRHRGQ 83
             QK   V+V +KW +D   D +  +     L++   L + I+   + C +PI  + +   Q
Sbjct:    20 QKRTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRC-IPISAISKKTRQ 78

Query:    84 LGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDI 143
               +    K++ F+R++P+IF E  V       +P F LTPEA ++  +     Q +  D+
Sbjct:    79 FDV--STKIAHFLRKFPSIF-EEFV--GPEYNLPWFRLTPEATELDRQERVVYQTSADDL 133

Query:   144 LDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKL 203
              DRL KL+++++D +LPL  +  +KW +GLP DY  +        F  V + D   GL +
Sbjct:   134 RDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAV 193

Query:   204 LSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTS 263
                  D  +S LQKNA +++++ ++    + FP+  ++G  L+ K  +WL E+Q LPY S
Sbjct:   194 DYNGGDKVLSVLQKNA-MKKRRGEVSLEEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVS 252

Query:   264 PYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKTE 299
             PY D S LDP +D++EKR+VG  HELL L +    E
Sbjct:   253 PYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAE 288

GO:0005739 "mitochondrion" evidence=IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0017004 "cytochrome complex assembly" evidence=IMP

TAIR|locus:4515103321 WTF1 "what's this factor?" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 9.3e-26, P = 9.3e-26
 Identities = 80/274 (29%), Positives = 142/274 (51%)

Query:    32 VNVKLKWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLK 91
             V   +K  K+ + D+VV  +K L+    +  I+ S     + +  L ++R  LGL +  +
Sbjct:    72 VRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRR 131

Query:    92 LSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLL 151
                 +R+YP +F    +++ G   +  F +T EA  ++ + +    + +  ++ +L KL+
Sbjct:   132 FIALLRKYPGVF---EIVEEGAYSLR-FKMTSEAERLYLDEMRIRNELEDVLVVKLRKLV 187

Query:   152 MLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLA 211
             M++ D+ + L+ I  LK D+GLP ++ D +  R+P+ F +V  P     L+L  WD +LA
Sbjct:   188 MMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPA-LELTHWDPELA 246

Query:   212 VS--QLQKNAVLQQKQEDIRSNSLAFPIRFTR-----GFGLKRKCMEWLKEWQSLPYTSP 264
             VS  +L ++    ++ E+ R+  +  P +F R     G  L +     + +++ + Y SP
Sbjct:   247 VSAAELSEDDNRTRESEE-RNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISP 305

Query:   265 YTDASHLDPRTDVSEKRIVGVFHELLHLTIRKKT 298
             Y D SHL   T   EK   GV HELL LT  K+T
Sbjct:   306 YKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRT 339

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2207380 AT1G79120 [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 84/268 (31%), Positives = 133/268 (49%)

Query:    44 LDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIF 103
             LD  +   K       L SII +  H  + +  L +H   +G      L   I +YP IF
Sbjct:    68 LDKAIDLNKKPSLILQLKSIIQAQKHGSLLLRDLEKH---VGFVHKWNLMAAIEKYPTIF 124

Query:   104 CESHVLDSGGTRVPCFG-LTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQ 162
                +V   GG + P F  LT +A  +  E   A +  +  +++ L KLLM++ D  +PL+
Sbjct:   125 ---YV--GGGHKEPPFVMLTEKAKKIAAEESEATESMEPILVNNLRKLLMMSVDCRVPLE 179

Query:   163 TIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVS----QLQKN 218
              ++ ++  MGLP D+   LI ++ E FSL ++ + +V L L +WD  LA++    +L + 
Sbjct:   180 KVEFIQSAMGLPQDFKSTLIPKYTEFFSL-KVINGKVNLVLENWDSSLAITAREDRLSRE 238

Query:   219 ----AVLQQKQEDIRS--NSL---AFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDAS 269
                 +V  +K+  I    N L   AF I F  GF      +E  ++WQ + + SPY +A 
Sbjct:   239 GFSESVGDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEEFEKWQKMEFPSPYLNAR 298

Query:   270 HLDPRTDVSEKRIVGVFHELLHLTIRKK 297
               D     + KR+V V HELL LT+ K+
Sbjct:   299 RFDAADPKARKRVVAVLHELLSLTMEKR 326

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2138738 AT4G08940 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 64/215 (29%), Positives = 115/215 (53%)

Query:    83 QLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKD 142
             +LG P+  K++ FI ++P IF +++    G  ++   G T    D+  E    ++  + D
Sbjct:   110 ELGFPRGRKVTKFIPKHPLIF-QTYRHSDG--KI-WLGFTEFMEDLLDEEKGLMESMELD 165

Query:   143 ILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLK 202
              ++ + KLLM+T+D+ + L  I   +   G+P D+ D  + ++P+ F +V   D    L+
Sbjct:   166 RVNCVRKLLMMTKDKRILLSKIHHTRLLFGIPEDFRDR-VAKYPDYFRVVTGGDGNRVLE 224

Query:   203 LLSWDDDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYT 262
             L++WD +LAVS+L++  ++    ED       FP++  +   L+ K    L    + P  
Sbjct:   225 LVNWDTNLAVSELERLFMID---EDKAKRVFKFPVKHGKELELEEKDTRKLNLLNTFPLV 281

Query:   263 SPYTDASHLDPRTDVSEKRIVGVFHELLHLTIRKK 297
             SPY+D   LD  +  +EK  VG+ HE L+LT+ K+
Sbjct:   282 SPYSDGWKLDVWSLEAEKYRVGIVHEFLNLTLEKR 316

GO:0009507 "chloroplast" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:504955534 RPD1 "ROOT PRIMORDIUM DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 4.2e-19, P = 4.2e-19
 Identities = 73/268 (27%), Positives = 131/268 (48%)

Query:    40 KDKSLDAVVAAEKDLRAAC-FLVSIISSASHCF-VPIYHLCRHRGQLGLPQDLKLSTFIR 97
             +D   D  +  EK +R    F   I+S  +H   + +      R  LG  Q  +   F+ 
Sbjct:    48 RDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQH-EPGAFLL 106

Query:    98 RYPNIFCESHVLDSGGTRVPCFGLTPEAAD-VHHEGLNALQQNQKDILDRLCKLLMLTRD 156
             ++P++F    + +    R+    LT +A D + HE    L Q   D + RL KL+M++  
Sbjct:   107 KFPHVF---EIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIP-DAVTRLRKLVMMSNT 162

Query:   157 RMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVG-LKLLSWDDDLAVSQL 215
               + L+ +   + + GLP D+   +I +HP+ F L+   + R   ++++  D +L++  +
Sbjct:   163 GRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAI 222

Query:   216 QKNAVLQQKQEDIRSNSL--AFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDP 273
             ++   ++ + + I +  +  +F + F  GF + +     + +WQ LPY SPY D S  D 
Sbjct:   223 ERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYEDISGYDL 282

Query:   274 RTDVS----EKRIVGVFHELLHLTIRKK 297
             R+  +    EKR V   HELL LT+ KK
Sbjct:   283 RSMEAQNRLEKRSVACIHELLSLTVEKK 310

GO:0009507 "chloroplast" evidence=ISM

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

TAIR|locus:2009230 AT1G06440 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 62/217 (28%), Positives = 111/217 (51%)

Query:    93 STFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLM 152
             ++F+R+YP+IF   HVL       P   LT  A ++  +   A+      ++DRL +LL 
Sbjct:    90 ASFLRKYPHIF---HVLYDPVKAEPFCRLTDVAMEISRQEALAITATLSLVVDRLVRLLS 146

Query:   153 LTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAV 212
             ++  + +PL+ + ++  ++GLP D+ D +I+++P LF L    +    +  L  +++  +
Sbjct:   147 MSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFKLSDGHESNTHILELVQEEEKRL 206

Query:   213 ---SQLQKNAVLQQKQED--IRSNSLAFPIR--FTRGFGLKRKCMEWLKEWQSLPYTSPY 265
                + ++K  V++  +ED  +    + F  +  +  G  L +     +KEWQ LPY  PY
Sbjct:   207 EFEAAVEKWRVVECSKEDCSVDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRLPYVGPY 266

Query:   266 TD-ASHLDPRTDVS--EKRIVGVFHELLHLTIRKKTE 299
              D       R+ V   EKR V + HE L+LT+ K  E
Sbjct:   267 EDMVGKKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVE 303

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2042561 AT2G31290 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 79/266 (29%), Positives = 127/266 (47%)

Query:    38 WA--KDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTF 95
             W+  KD  L++ ++  K       L +II    +    I  L +    L L    K   +
Sbjct:    26 WSTKKDPDLESALSRNKRWIVNSRLKNIILRCPNQVASIKFLQKKFKTLDLQG--KALNW 83

Query:    96 IRRYPNIFCESHV-LDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDIL-DRLCKLLML 153
             +++YP   C  HV L++      C    P    V  E L  ++  Q+ +L DRL KLLML
Sbjct:    84 LKKYP---CCFHVYLEND--EYYCRLTKPMMTLVEEEEL--VKDTQEPVLADRLAKLLML 136

Query:   154 TRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDR--VGLKLLSWDDDLA 211
             + ++ L +  +++ K   G P DY   ++ ++ ++F LV     +  + ++LL W  +LA
Sbjct:   137 SVNQRLNVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELLLWKPELA 196

Query:   212 VSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHL 271
             VS ++  A   +K     S S + P  +T+ +       E   E+ + PY SPY D   L
Sbjct:   197 VSAVEAAA---KKCGSEPSFSCSLPSTWTKPW-------ERFMEFNAFPYISPYEDHGDL 246

Query:   272 DPRTDVSEKRIVGVFHELLHLTIRKK 297
                +  SEKR VG+ HELL LT+ KK
Sbjct:   247 VEGSKESEKRSVGLVHELLSLTLWKK 272

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2166305 emb1692 "embryo defective 1692" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 2.5e-14, P = 2.5e-14
 Identities = 79/272 (29%), Positives = 125/272 (45%)

Query:    37 KWAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFI 96
             K  +  SLD  V  +  +R    L +++ S    ++PI  L + R  L +   L + + I
Sbjct:    58 KIVRSPSLDRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMI 117

Query:    97 RRYPNIF----CESHVLDSGGTRVP----CFGLTPEAADVHHEGLNALQQNQKDILDRLC 148
             RRYP IF      +  L    T+ P    C  LT  A+ +  + LN   +    +  +L 
Sbjct:   118 RRYPTIFELFTTPTPHLPMNATK-PLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQ 176

Query:   149 KLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDD 208
             KLLML+  R L L  +  +  D G P ++   L   +P+ F  V     R  L+L+S D 
Sbjct:   177 KLLMLSSHRRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYGRA-LELVSSDP 235

Query:   209 DLAVSQLQKNAVLQQKQEDIRSNSLAFP-IRFTRGFGLKRKCMEWLKEWQSLPYTSPYTD 267
             +LA +Q+    V    +  I    L F  +   RG  LKR+   +L +++  P   PY  
Sbjct:   236 ELA-NQMPSPEV---DRGLIVDRPLKFKRLNLRRGLNLKRRHQGFLIKFRESPDVCPYKM 291

Query:   268 AS-HLDPRTDVSEKRIVGVFHELLHLTIRKKT 298
             +S +L   +  +EKR   V  E+L LT+ K+T
Sbjct:   292 SSDYLASESIEAEKRACAVVREVLGLTVEKRT 323


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.139   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      299       299   0.00095  115 3  11 22  0.46    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  245 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.54u 0.09s 25.63t   Elapsed:  00:00:26
  Total cpu time:  25.54u 0.09s 25.63t   Elapsed:  00:00:27
  Start:  Thu May  9 21:01:30 2013   End:  Thu May  9 21:01:57 2013

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033581001 SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (454 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	299
pfam11955	332	pfam11955, PORR, Plant organelle RNA recognition d	3e-94

>gnl|CDD|221338 pfam11955, PORR, Plant organelle RNA recognition domain

 Score =  281 bits (721), Expect = 3e-94
 Identities = 114/262 (43%), Positives = 160/262 (61%), Gaps = 6/262 (2%)

Query: 38  WAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIR 97
           W +D +LD  V  EK LR    L  ++ S     +P+  L + R QLGLP       F+R
Sbjct: 1   WVRDPALDKAVEREKRLRLVLRLKDLLLSQPDHSLPLRDLSKLRRQLGLP--RGALAFLR 58

Query: 98  RYPNIFCESHVLDSGGTRVPCFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDR 157
           +YP+IF    +       V C  LTP+A D+  E    L+ ++ D++DRL KLLM+++DR
Sbjct: 59  KYPSIF---ELFRHPSDSVLCVRLTPKAEDLLAEEARLLESSEPDLVDRLRKLLMMSKDR 115

Query: 158 MLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDDRVGLKLLSWDDDLAVSQLQK 217
            LPL+ +  L+ D+GLP D+ D L+ ++P+ F LV   D   GL+L+SWD +LAVS L+K
Sbjct: 116 RLPLEKLAHLRRDLGLPDDFRDSLVPKYPDYFRLVD-EDGGDGLELVSWDPELAVSALEK 174

Query: 218 NAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRTDV 277
              ++ +  D      AFP++F  GF L++K  E L+EWQ LPY SPY DASHLDP +D 
Sbjct: 175 RREIEDRGGDRVDRRFAFPVKFPPGFKLRKKFREKLEEWQKLPYISPYEDASHLDPGSDE 234

Query: 278 SEKRIVGVFHELLHLTIRKKTE 299
           +EKR V V HELL LT+ K+TE
Sbjct: 235 AEKRAVAVLHELLSLTVEKRTE 256

This family, which was previously known as DUF860, has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localise to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	100.0
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	99.57

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=100.00  E-value=2.3e-90  Score=661.66  Aligned_cols=258  Identities=47%  Similarity=0.768  Sum_probs=246.2

Q ss_pred             eccccchHHHHHhhhchHHHHHHHHHHhcCCCCcccccchhhhcCcCCCCCcchhhhHhhhCCcceeeecccCCCCCCcC
Q 041085           38 WAKDKSLDAVVAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVP  117 (299)
Q Consensus        38 wvrd~~LD~~v~r~k~l~~v~~Lk~li~~~p~~~lpl~~L~k~r~~LgLp~~~~~~~FlrkyP~iF~~~~~~~p~~~~~p  117 (299)
                      |+||++||++|+++|+++++++|+++|+++|+++|||++|++++++||| +++++++||+|||+||++  |.++. .++|
T Consensus         1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l-~~~~~~~flrkyP~iF~~--~~~~~-~~~~   76 (335)
T PF11955_consen    1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGL-KPRKVSRFLRKYPSIFEV--FQHPS-RSVP   76 (335)
T ss_pred             CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCC-CcccHHHHHHhCCceEEE--eccCC-CCCc
Confidence            9999999999999999999999999999999999999999999999999 469999999999999999  67654 4689


Q ss_pred             ceecCHHHHHHHHHHHHHHhhchHHHHHHHHHHhhccCCCccchhhHHhhHHhcCCChhhhcccccCCCCCeEEEeCCCC
Q 041085          118 CFGLTPEAADVHHEGLNALQQNQKDILDRLCKLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLPDD  197 (299)
Q Consensus       118 ~~rLT~~a~~L~~eE~~v~~~~e~~~v~rL~KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~~~~  197 (299)
                      ||+||++|++|++||+++++++|+++|++|+||||||.+++|||++|+|++||||||+||+++++++|||+|+||+..++
T Consensus        77 ~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~  156 (335)
T PF11955_consen   77 WFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDG  156 (335)
T ss_pred             eEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             cceEEEeecCCCccccHHhHHHHHh--hhhccccCCccceeecCCCCcccchhHHHHHHhhhcCCCCCCCCCCCCCCCCC
Q 041085          198 RVGLKLLSWDDDLAVSQLQKNAVLQ--QKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPYTSPYTDASHLDPRT  275 (299)
Q Consensus       198 ~~~LeLv~Wd~~LAvs~~E~~~~~~--~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~S  275 (299)
                      ..+||||+|||+||||++|++++.+  +.++...+++++|||+||+||++++++++|+++||+|||+|||+|+++++++|
T Consensus       157 ~~~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s  236 (335)
T PF11955_consen  157 GRYLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGS  236 (335)
T ss_pred             CCEEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCC
Confidence            8899999999999999999999965  23444556799999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHhhccccccCC
Q 041085          276 DVSEKRIVGVFHELLHLTIRKKTE  299 (299)
Q Consensus       276 ~~~EKRaVaVlHElLSLTveKr~e  299 (299)
                      +++|||||||+||||||||||||+
T Consensus       237 ~~~EKRaVaVlHElLSLTveKr~~  260 (335)
T PF11955_consen  237 DEAEKRAVAVLHELLSLTVEKRTE  260 (335)
T ss_pred             hHHHhHHHHHHHHHHHhhhhhhcc
Confidence            999999999999999999999986

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=99.57  E-value=1.5e-15  Score=146.18  Aligned_cols=142  Identities=20%  Similarity=0.342  Sum_probs=113.1

Q ss_pred             HHhhhchHHHHHHHHHHhcCCCCcccccchhhhcCcCCCCCcchhhhHhhhCCcceeeecccCCCCCCcCceecCHHHHH
Q 041085           48 VAAEKDLRAACFLVSIISSASHCFVPIYHLCRHRGQLGLPQDLKLSTFIRRYPNIFCESHVLDSGGTRVPCFGLTPEAAD  127 (299)
Q Consensus        48 v~r~k~l~~v~~Lk~li~~~p~~~lpl~~L~k~r~~LgLp~~~~~~~FlrkyP~iF~~~~~~~p~~~~~p~~rLT~~a~~  127 (299)
                      +-.+.....|.+|+++||.+.+++||++.+..++++||||++.. .+++.+||+.|.+.  ....  +..++.|..+-.+
T Consensus        94 ~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~-~~lv~~yP~~Frvv--~~~~--~~~~LeLv~Wd~~  168 (335)
T PF11955_consen   94 VREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFR-DSLVPKYPDYFRVV--DLED--GGRYLELVSWDPE  168 (335)
T ss_pred             HHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhc-cchhhhCCCCcEEe--ecCC--CCCEEEEeecCCc
Confidence            33334467899999999999999999999999999999998775 88999999999994  2222  2345555554222


Q ss_pred             HHH-------H-H------------------------------------HHH---------------HhhchHHHHHHHH
Q 041085          128 VHH-------E-G------------------------------------LNA---------------LQQNQKDILDRLC  148 (299)
Q Consensus       128 L~~-------e-E------------------------------------~~v---------------~~~~e~~~v~rL~  148 (299)
                      |+.       + |                                    |++               ..++|+.+|..+|
T Consensus       169 LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlH  248 (335)
T PF11955_consen  169 LAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLH  248 (335)
T ss_pred             cCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHH
Confidence            211       1 0                                    000               3358999999999


Q ss_pred             HHhhccCCCccchhhHHhhHHhcCCChhhhcccccCCCCCeEEEeCC
Q 041085          149 KLLMLTRDRMLPLQTIDQLKWDMGLPYDYCDYLITRHPELFSLVRLP  195 (299)
Q Consensus       149 KLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~lv~~yP~~Frvv~~~  195 (299)
                      .||.||..|++.+++|.|++++||||.+| ..++-+||++|+|+...
T Consensus       249 ElLSLTveKr~~~~~L~~fr~ef~lp~k~-~~~l~rHPgIFYvS~kg  294 (335)
T PF11955_consen  249 ELLSLTVEKRTEVDHLTHFRKEFGLPQKF-RRLLLRHPGIFYVSLKG  294 (335)
T ss_pred             HHHHhhhhhhccHHHHHHHHHHhCCcHHH-HHHHHhCCCeEEEeccC
Confidence            99999999999999999999999999999 56788999999999753

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 5e-05
 Identities = 49/340 (14%), Positives = 105/340 (30%), Gaps = 107/340 (31%)

Query: 7   SGRAVYSAFLCECRKGFSYQQKFGLVNVKLKW---AKDKSLDAVVAAEKDLRAACFLV-- 61
           SG+   +  +C     +  Q K    + K+ W       S + V+   + L    + +  
Sbjct: 161 SGKTWVALDVC---LSYKVQCKM---DFKIFWLNLKNCNSPETVLEMLQKL---LYQIDP 211

Query: 62  SIISSASHCFVPIYHLCRHRGQLGLPQDLK--LSTFI--RRYPNIFCESHVLDSGGTRVP 117
           +  S + H       +            ++  L   +  + Y N      VL        
Sbjct: 212 NWTSRSDHSSNIKLRI----------HSIQAELRRLLKSKPYENCLL---VLL------- 251

Query: 118 CFGLTPEAADVHHEGLNALQQNQKDI--LDRLCKLLMLTRDR------------------ 157
                    +V         QN K     +  CK+L+ TR +                  
Sbjct: 252 ---------NV---------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 158 ----MLPLQTIDQL-KW-DM---GLPYDYCDYLITRHPELFSLV--RLPDDRVGLKLLSW 206
               + P +    L K+ D     LP +      T +P   S++   + D      L +W
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVL----TTNPRRLSIIAESIRDG-----LATW 344

Query: 207 D-----DDLAVSQLQKNAVLQQKQEDIRSNSLAFPIRFTRGFGLKRKCMEWLKEWQSLPY 261
           D     +   ++ + ++++   +  + R       + F     +    +  +  W  +  
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSLI--WFDVIK 401

Query: 262 TSPYTDASHLDPRTDVSEKRIVGVFHEL--LHLTIRKKTE 299
           +      + L   + V EK+       +  ++L ++ K E
Sbjct: 402 SDVMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLE 440

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00