Citrus Sinensis ID: 041106


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80---
MGIRVLGFIPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKKRFLVPEFGFNYPMGASTIPSGQDTFIEVISRLDRS
cccccccHHHHHHHcccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccccccEEEEccHHHHHHHHHHHHcc
ccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccEEEEEccccccccccccEccccHHHHHHHHHHHccc
mgirvlgfipakqilphsvlttknkeastcadvpkgFLSVYVgenqkkrflvpefgfnypmgastipsgqdTFIEVISRLDRS
mgirvlgfipakqilphsvlTTKNKEASTCADVPKGFLSVYVGENQKKRFLVPEFGFNYPMgastipsgqdtFIEVISRLDRS
MGIRVLGFIPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKKRFLVPEFGFNYPMGASTIPSGQDTFIEVISRLDRS
**IRVLGFIPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKKRFLVPEFGFNYPMGASTIPSGQDTFIEVI******
*******FIP**************************FLSVYVGENQKKRFLVPEFGFNYPMGASTIPSGQDTFIEVISRLD**
MGIRVLGFIPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKKRFLVPEFGFNYPMGASTIPSGQDTFIEVISRLDRS
*GIRVLGFIPAKQILPHSVLTT*******CADVPKGFLSVYVGENQKKRFLVPEFGFNYPMGASTIPSGQDTFIEVISRLD**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooo
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGIRVLGFIPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKKRFLVPEFGFNYPMGASTIPSGQDTFIEVISRLDRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query83 2.2.26 [Sep-21-2011]
P3229592 Indole-3-acetic acid-indu N/A no 0.855 0.771 0.357 6e-09
P3308092 Auxin-induced protein X10 no no 0.686 0.619 0.381 1e-07
P3308182 Auxin-induced protein 15A no no 0.674 0.682 0.4 2e-07
P3308282 Auxin-induced protein X15 no no 0.674 0.682 0.36 1e-06
P3307993 Auxin-induced protein 10A no no 0.879 0.784 0.333 2e-06
P3308390 Auxin-induced protein 6B no no 0.710 0.655 0.346 4e-06
>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1 Back     alignment and function desciption
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 27/98 (27%)

Query: 1  MGIRVLGFIPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKKRFLVP------- 53
          MG R+ G            L+ +N+ +S   D PKG+L+VYVGEN  KRF++P       
Sbjct: 1  MGFRLPGI--------RKTLSARNEASSKVLDAPKGYLAVYVGENM-KRFVIPVSHLNQP 51

Query: 54 -----------EFGFNYPMGASTIPSGQDTFIEVISRL 80
                     EFG+++PMG  TIP  +D F  + S L
Sbjct: 52 LFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCL 89





Vigna radiata var. radiata (taxid: 3916)
>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query83
22408053099 SAUR family protein [Populus trichocarpa 0.891 0.747 0.537 6e-16
22410329399 SAUR family protein [Populus trichocarpa 0.963 0.808 0.49 1e-15
22408052298 SAUR family protein [Populus trichocarpa 0.963 0.816 0.49 2e-14
22408052899 SAUR family protein [Populus trichocarpa 0.951 0.797 0.489 2e-14
225430953103 PREDICTED: auxin-induced protein X10A-li 0.975 0.786 0.425 2e-13
22410328798 SAUR family protein [Populus trichocarpa 0.951 0.806 0.47 2e-13
449531962100 PREDICTED: auxin-induced protein X10A-li 0.987 0.82 0.425 3e-13
225430959103 PREDICTED: auxin-induced protein X10A [V 1.0 0.805 0.446 3e-13
35947676594 PREDICTED: auxin-induced protein 10A5 [V 0.915 0.808 0.435 9e-13
388495436101 unknown [Lotus japonicus] 0.987 0.811 0.43 1e-12
>gi|224080530|ref|XP_002306152.1| SAUR family protein [Populus trichocarpa] gi|222849116|gb|EEE86663.1| SAUR family protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 58/93 (62%), Gaps = 19/93 (20%)

Query: 9  IPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKKRFLVP--------------- 53
          I AKQIL  SV  T NK AS  +DVPKGFL+VYVGE  KKRF+VP               
Sbjct: 8  ILAKQILCRSVWIT-NKSASRSSDVPKGFLAVYVGEMDKKRFVVPVSYLNEPSFQDLLSK 66

Query: 54 ---EFGFNYPMGASTIPSGQDTFIEVISRLDRS 83
             EFGFN+PMG  TIP  +DTFI+++S L RS
Sbjct: 67 AEEEFGFNHPMGGLTIPCREDTFIDILSSLSRS 99




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103293|ref|XP_002312998.1| SAUR family protein [Populus trichocarpa] gi|222849406|gb|EEE86953.1| SAUR family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224080522|ref|XP_002306149.1| SAUR family protein [Populus trichocarpa] gi|222849113|gb|EEE86660.1| SAUR family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224080528|ref|XP_002306151.1| SAUR family protein [Populus trichocarpa] gi|222849115|gb|EEE86662.1| SAUR family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225430953|ref|XP_002271562.1| PREDICTED: auxin-induced protein X10A-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103287|ref|XP_002312996.1| SAUR family protein [Populus trichocarpa] gi|222849404|gb|EEE86951.1| SAUR family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449531962|ref|XP_004172954.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225430959|ref|XP_002271660.1| PREDICTED: auxin-induced protein X10A [Vitis vinifera] Back     alignment and taxonomy information
>gi|359476765|ref|XP_002271529.2| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388495436|gb|AFK35784.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query83
TAIR|locus:207938996 SAUR29 "AT3G03820" [Arabidopsi 0.771 0.666 0.450 2.9e-07
TAIR|locus:2135144104 SAUR9 "AT4G36110" [Arabidopsis 0.493 0.394 0.465 6.5e-07
TAIR|locus:204703786 AT2G21200 "AT2G21200" [Arabido 0.662 0.639 0.4 7.8e-07
TAIR|locus:214177299 AT4G38840 "AT4G38840" [Arabido 0.867 0.727 0.364 1e-06
TAIR|locus:216157390 SAUR22 "AT5G18050" [Arabidopsi 0.710 0.655 0.403 1.6e-06
TAIR|locus:216151890 SAUR23 "AT5G18060" [Arabidopsi 0.710 0.655 0.403 1.6e-06
TAIR|locus:2060928112 AT2G18010 "AT2G18010" [Arabido 0.349 0.258 0.5 1.7e-06
TAIR|locus:216154391 SAUR20 "AT5G18020" [Arabidopsi 0.734 0.670 0.434 2.1e-06
TAIR|locus:2116895105 AT4G34810 "AT4G34810" [Arabido 0.746 0.590 0.393 2.1e-06
TAIR|locus:216155888 AT5G18030 "AT5G18030" [Arabido 0.710 0.670 0.416 2.6e-06
TAIR|locus:2079389 SAUR29 "AT3G03820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 32/71 (45%), Positives = 43/71 (60%)

Query:     5 VLGFIPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKK--RFLVPEFGFNYPMG 62
             V GF+ AK+IL  SV  T+ KE S     PKGFL+VYVGE+Q+K  R LVP    N P+ 
Sbjct:     4 VRGFMAAKKILGGSVAGTR-KETSA----PKGFLAVYVGESQRKKQRHLVPVSYLNQPLF 58

Query:    63 ASTIPSGQDTF 73
              + +   ++ F
Sbjct:    59 QALLIKAEEEF 69


GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0009733 "response to auxin stimulus" evidence=ISS
TAIR|locus:2135144 SAUR9 "AT4G36110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047037 AT2G21200 "AT2G21200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060928 AT2G18010 "AT2G18010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query83
PLN03220105 PLN03220, PLN03220, uncharacterized protein; Provi 3e-14
pfam0251999 pfam02519, Auxin_inducible, Auxin responsive prote 1e-11
PLN03219108 PLN03219, PLN03219, uncharacterized protein; Provi 1e-08
PLN03090104 PLN03090, PLN03090, auxin-responsive family protei 4e-08
>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional Back     alignment and domain information
 Score = 61.7 bits (149), Expect = 3e-14
 Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 23/92 (25%)

Query: 12  KQILPHSVLTTKNKEASTCAD-VPKGFLSVYVGEN---QKKRFLVP-------------- 53
           KQIL  + L  +N+ +S+ +D VPKG ++VYVGE    +KKRF+VP              
Sbjct: 13  KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLS 72

Query: 54  ----EFGFNYPMGASTIPSGQDTFIEVI-SRL 80
               EFGFN+PMG  TIP  ++ F+++I SRL
Sbjct: 73  RAEEEFGFNHPMGGLTIPCREEVFLDLIASRL 104


Length = 105

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein Back     alignment and domain information
>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional Back     alignment and domain information
>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 83
PLN03220105 uncharacterized protein; Provisional 99.96
PLN03090104 auxin-responsive family protein; Provisional 99.96
PLN03219108 uncharacterized protein; Provisional 99.91
PF02519100 Auxin_inducible: Auxin responsive protein; InterPr 99.91
>PLN03220 uncharacterized protein; Provisional Back     alignment and domain information
Probab=99.96  E-value=5.3e-30  Score=172.45  Aligned_cols=79  Identities=48%  Similarity=0.870  Sum_probs=67.1

Q ss_pred             CccccCchhhh-hhhcccccccccccC-CcccccCCCceEEEEEcCC---cceeeEEe------------------ccCc
Q 041106            1 MGIRVLGFIPA-KQILPHSVLTTKNKE-ASTCADVPKGFLSVYVGEN---QKKRFLVP------------------EFGF   57 (83)
Q Consensus         1 m~~r~~~i~~~-k~~l~r~~~~~~~~~-~~~~~~vpkG~~aVYVG~~---~~~RFvVp------------------EfGf   57 (83)
                      ||+++++|..+ ||+|+||+...+++. ++.+.+|||||||||||++   ..+|||||                  ||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf   80 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF   80 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence            99999999966 999999995433333 3567799999999999982   23999999                  9999


Q ss_pred             cCCCCceEeeCCHHHHHHHHHH
Q 041106           58 NYPMGASTIPSGQDTFIEVISR   79 (83)
Q Consensus        58 ~~~~G~L~IPC~~~~F~~vl~~   79 (83)
                      +|++|+|+|||+++.|+++++.
T Consensus        81 ~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         81 NHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCEEeeCCHHHHHHHHHh
Confidence            9977999999999999999864



>PLN03090 auxin-responsive family protein; Provisional Back     alignment and domain information
>PLN03219 uncharacterized protein; Provisional Back     alignment and domain information
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00