Citrus Sinensis ID: 041106
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 83 | ||||||
| 224080530 | 99 | SAUR family protein [Populus trichocarpa | 0.891 | 0.747 | 0.537 | 6e-16 | |
| 224103293 | 99 | SAUR family protein [Populus trichocarpa | 0.963 | 0.808 | 0.49 | 1e-15 | |
| 224080522 | 98 | SAUR family protein [Populus trichocarpa | 0.963 | 0.816 | 0.49 | 2e-14 | |
| 224080528 | 99 | SAUR family protein [Populus trichocarpa | 0.951 | 0.797 | 0.489 | 2e-14 | |
| 225430953 | 103 | PREDICTED: auxin-induced protein X10A-li | 0.975 | 0.786 | 0.425 | 2e-13 | |
| 224103287 | 98 | SAUR family protein [Populus trichocarpa | 0.951 | 0.806 | 0.47 | 2e-13 | |
| 449531962 | 100 | PREDICTED: auxin-induced protein X10A-li | 0.987 | 0.82 | 0.425 | 3e-13 | |
| 225430959 | 103 | PREDICTED: auxin-induced protein X10A [V | 1.0 | 0.805 | 0.446 | 3e-13 | |
| 359476765 | 94 | PREDICTED: auxin-induced protein 10A5 [V | 0.915 | 0.808 | 0.435 | 9e-13 | |
| 388495436 | 101 | unknown [Lotus japonicus] | 0.987 | 0.811 | 0.43 | 1e-12 |
| >gi|224080530|ref|XP_002306152.1| SAUR family protein [Populus trichocarpa] gi|222849116|gb|EEE86663.1| SAUR family protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 58/93 (62%), Gaps = 19/93 (20%)
Query: 9 IPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKKRFLVP--------------- 53
I AKQIL SV T NK AS +DVPKGFL+VYVGE KKRF+VP
Sbjct: 8 ILAKQILCRSVWIT-NKSASRSSDVPKGFLAVYVGEMDKKRFVVPVSYLNEPSFQDLLSK 66
Query: 54 ---EFGFNYPMGASTIPSGQDTFIEVISRLDRS 83
EFGFN+PMG TIP +DTFI+++S L RS
Sbjct: 67 AEEEFGFNHPMGGLTIPCREDTFIDILSSLSRS 99
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103293|ref|XP_002312998.1| SAUR family protein [Populus trichocarpa] gi|222849406|gb|EEE86953.1| SAUR family protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224080522|ref|XP_002306149.1| SAUR family protein [Populus trichocarpa] gi|222849113|gb|EEE86660.1| SAUR family protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224080528|ref|XP_002306151.1| SAUR family protein [Populus trichocarpa] gi|222849115|gb|EEE86662.1| SAUR family protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225430953|ref|XP_002271562.1| PREDICTED: auxin-induced protein X10A-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224103287|ref|XP_002312996.1| SAUR family protein [Populus trichocarpa] gi|222849404|gb|EEE86951.1| SAUR family protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449531962|ref|XP_004172954.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|225430959|ref|XP_002271660.1| PREDICTED: auxin-induced protein X10A [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359476765|ref|XP_002271529.2| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|388495436|gb|AFK35784.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 83 | ||||||
| TAIR|locus:2079389 | 96 | SAUR29 "AT3G03820" [Arabidopsi | 0.771 | 0.666 | 0.450 | 2.9e-07 | |
| TAIR|locus:2135144 | 104 | SAUR9 "AT4G36110" [Arabidopsis | 0.493 | 0.394 | 0.465 | 6.5e-07 | |
| TAIR|locus:2047037 | 86 | AT2G21200 "AT2G21200" [Arabido | 0.662 | 0.639 | 0.4 | 7.8e-07 | |
| TAIR|locus:2141772 | 99 | AT4G38840 "AT4G38840" [Arabido | 0.867 | 0.727 | 0.364 | 1e-06 | |
| TAIR|locus:2161573 | 90 | SAUR22 "AT5G18050" [Arabidopsi | 0.710 | 0.655 | 0.403 | 1.6e-06 | |
| TAIR|locus:2161518 | 90 | SAUR23 "AT5G18060" [Arabidopsi | 0.710 | 0.655 | 0.403 | 1.6e-06 | |
| TAIR|locus:2060928 | 112 | AT2G18010 "AT2G18010" [Arabido | 0.349 | 0.258 | 0.5 | 1.7e-06 | |
| TAIR|locus:2161543 | 91 | SAUR20 "AT5G18020" [Arabidopsi | 0.734 | 0.670 | 0.434 | 2.1e-06 | |
| TAIR|locus:2116895 | 105 | AT4G34810 "AT4G34810" [Arabido | 0.746 | 0.590 | 0.393 | 2.1e-06 | |
| TAIR|locus:2161558 | 88 | AT5G18030 "AT5G18030" [Arabido | 0.710 | 0.670 | 0.416 | 2.6e-06 |
| TAIR|locus:2079389 SAUR29 "AT3G03820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 5 VLGFIPAKQILPHSVLTTKNKEASTCADVPKGFLSVYVGENQKK--RFLVPEFGFNYPMG 62
V GF+ AK+IL SV T+ KE S PKGFL+VYVGE+Q+K R LVP N P+
Sbjct: 4 VRGFMAAKKILGGSVAGTR-KETSA----PKGFLAVYVGESQRKKQRHLVPVSYLNQPLF 58
Query: 63 ASTIPSGQDTF 73
+ + ++ F
Sbjct: 59 QALLIKAEEEF 69
|
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| TAIR|locus:2135144 SAUR9 "AT4G36110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2047037 AT2G21200 "AT2G21200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2060928 AT2G18010 "AT2G18010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 83 | |||
| PLN03220 | 105 | PLN03220, PLN03220, uncharacterized protein; Provi | 3e-14 | |
| pfam02519 | 99 | pfam02519, Auxin_inducible, Auxin responsive prote | 1e-11 | |
| PLN03219 | 108 | PLN03219, PLN03219, uncharacterized protein; Provi | 1e-08 | |
| PLN03090 | 104 | PLN03090, PLN03090, auxin-responsive family protei | 4e-08 |
| >gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional | Back alignment and domain information |
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Score = 61.7 bits (149), Expect = 3e-14
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 23/92 (25%)
Query: 12 KQILPHSVLTTKNKEASTCAD-VPKGFLSVYVGEN---QKKRFLVP-------------- 53
KQIL + L +N+ +S+ +D VPKG ++VYVGE +KKRF+VP
Sbjct: 13 KQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLS 72
Query: 54 ----EFGFNYPMGASTIPSGQDTFIEVI-SRL 80
EFGFN+PMG TIP ++ F+++I SRL
Sbjct: 73 RAEEEFGFNHPMGGLTIPCREEVFLDLIASRL 104
|
Length = 105 |
| >gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein | Back alignment and domain information |
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| >gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional | Back alignment and domain information |
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| >gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 83 | |||
| PLN03220 | 105 | uncharacterized protein; Provisional | 99.96 | |
| PLN03090 | 104 | auxin-responsive family protein; Provisional | 99.96 | |
| PLN03219 | 108 | uncharacterized protein; Provisional | 99.91 | |
| PF02519 | 100 | Auxin_inducible: Auxin responsive protein; InterPr | 99.91 |
| >PLN03220 uncharacterized protein; Provisional | Back alignment and domain information |
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Probab=99.96 E-value=5.3e-30 Score=172.45 Aligned_cols=79 Identities=48% Similarity=0.870 Sum_probs=67.1
Q ss_pred CccccCchhhh-hhhcccccccccccC-CcccccCCCceEEEEEcCC---cceeeEEe------------------ccCc
Q 041106 1 MGIRVLGFIPA-KQILPHSVLTTKNKE-ASTCADVPKGFLSVYVGEN---QKKRFLVP------------------EFGF 57 (83)
Q Consensus 1 m~~r~~~i~~~-k~~l~r~~~~~~~~~-~~~~~~vpkG~~aVYVG~~---~~~RFvVp------------------EfGf 57 (83)
||+++++|..+ ||+|+||+...+++. ++.+.+|||||||||||++ ..+||||| ||||
T Consensus 1 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf 80 (105)
T PLN03220 1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGF 80 (105)
T ss_pred CCcchhhhHHHHHHHHHHHhhcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCC
Confidence 99999999966 999999995433333 3567799999999999982 23999999 9999
Q ss_pred cCCCCceEeeCCHHHHHHHHHH
Q 041106 58 NYPMGASTIPSGQDTFIEVISR 79 (83)
Q Consensus 58 ~~~~G~L~IPC~~~~F~~vl~~ 79 (83)
+|++|+|+|||+++.|+++++.
T Consensus 81 ~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 81 NHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred CCCCCCEEeeCCHHHHHHHHHh
Confidence 9977999999999999999864
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| >PLN03090 auxin-responsive family protein; Provisional | Back alignment and domain information |
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| >PLN03219 uncharacterized protein; Provisional | Back alignment and domain information |
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| >PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) [] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00