Citrus Sinensis ID: 041127

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
Protein Sequence
MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIEDMAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNRKLANILSFMQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELAFEETLEKVLKL
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHHHHcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEcHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkrkasdseeGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDicckparphhdedpdqmYDKYQQILADYmpskvlpylrekhDEYDLLRELLKSWANHKFLAKWLSRVFlplqagyiprmalpelnafGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIEDMAAYYsrkasnwilQDSFDYLVNVGECLKNERERashylqpssnrKLANILSFMQKGEFRCRqllrghkldghsiiccyskkskneLAFEETLEKVLKL
Flexible Loop (DISEMBL)
mkrkasdseegwdyLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIdreregeeidrtlvkNVLDLFVEIEDMAAYYSRKASNWILQDSFDYLVNVGECLKNERERashylqpssnrkLANILSFMQKGEFRCRQLLRGHKLDGHSIICCyskksknelafEETLEKVLKL
Low Complexity Region (SEG)
MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALidreregeeidrTLVKNVLDLFVEIEDMAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNRKLANILSFMQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELAFEETLEKVLKL
Disordered region (IsUnstruct)
***********WDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPA**********MYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIEDMAAYYSRKASNWILQDSFDYLVNVGECLKNE**************KLANILSFMQKGEFRCRQLLRGHKLDGHSIICCYSK******************
Disordered Region (DISOPRED)
***KASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARP****DPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIEDMAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNRKLANILSFMQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELAFEETLEKVLKL
Disordered Region (DISEMBL)
**********GWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIEDMAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNRKLANILSFMQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELAFEE********
Disordered Region (DISPRO)
**RKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIEDMAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNRKLANILSFMQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELAFEETLEKVLKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEIEDMAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNRKLANILSFMQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELAFEETLEKVLKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	285	2.2.26 [Sep-21-2011]
Q94AH6	738	Cullin-1 OS=Arabidopsis t	yes	no	0.898	0.346	0.493	2e-71
Q9XIE9	374	Putative cullin-like prot	no	no	0.771	0.588	0.455	1e-54
P0CH31	721	Putative cullin-like prot	no	no	0.778	0.307	0.438	2e-51
Q9XIE8	255	Cullin-like protein 3 OS=	no	no	0.761	0.850	0.427	2e-50
Q9SRZ0	742	Cullin-2 OS=Arabidopsis t	no	no	0.887	0.340	0.395	5e-47
Q54NZ5	769	Cullin-3 OS=Dictyostelium	yes	no	0.603	0.223	0.298	3e-14
Q13619	759	Cullin-4A OS=Homo sapiens	yes	no	0.838	0.314	0.229	3e-11
Q24311	774	Cullin homolog 1 OS=Droso	yes	no	0.585	0.215	0.248	5e-09
Q9WTX6	776	Cullin-1 OS=Mus musculus	yes	no	0.673	0.247	0.215	1e-08
Q5R4G6	776	Cullin-1 OS=Pongo abelii	no	no	0.673	0.247	0.215	1e-08

>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1

 Score =  269 bits (687), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/288 (49%), Positives = 187/288 (64%), Gaps = 32/288 (11%)

Query: 1   MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDE 60
           M+RK  D E+GWDY++ G TKLKRI EGL E AF+ E YMMLYT +Y++C +  +P HD 
Sbjct: 1   MERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQ--KPPHDY 58

Query: 61  DPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQ 120
              Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL K W+NHK + +WLSR F  L 
Sbjct: 59  -SQQLYDKYREAFEEYINSTVLPALREKHDEF-MLRELFKRWSNHKVMVRWLSRFFYYLD 116

Query: 121 AGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
             +I R +LP LN  G++CFRDLV+  +  KVK AV+AL+D+EREGE+IDR L+KNVLD+
Sbjct: 117 RYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDI 176

Query: 181 FVEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERAS 222
           +VEI                 +D ++YYSRKAS+WI +DS  DY++   ECLK ERER +
Sbjct: 177 YVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVA 236

Query: 223 HYLQPSSNRKLANIL----------SFMQKGEFRCRQLLRGHKLDGHS 260
           HYL  SS  KL   +            ++K    CR LLR  K+D  S
Sbjct: 237 HYLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLS 284

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 2 OS=Arabidopsis thaliana GN=At1g59790 PE=3 SV=2

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/246 (45%), Positives = 155/246 (63%), Gaps = 26/246 (10%)

Query: 9   EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
           EEGW  +++G TKL RI EG  E  F   +   LYTI+YD+C + +     +   Q+Y+K
Sbjct: 15  EEGWSNIQKGITKLIRILEGEPEPTFYFSECFKLYTIIYDMCVQRS-----DYSQQLYEK 69

Query: 69  YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPR-- 126
           Y++++ DY    VLP LREKHDE D+LREL+K W NHK + KWLS+ F+ +    + R  
Sbjct: 70  YRKVIEDYTIQTVLPSLREKHDE-DMLRELVKRWNNHKIMVKWLSKFFVYIDRHLVRRSK 128

Query: 127 MALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE--- 183
           + +P L+  G++CF DLV+  M+   K+ V+ALI +EREGE+IDR LVKNVLD++VE   
Sbjct: 129 IPIPSLDEVGLTCFLDLVYCEMQSTAKEVVIALIHKEREGEQIDRALVKNVLDIYVENGM 188

Query: 184 --------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPS 228
                         ++D A+YYSRKAS W  +DS  DY++ V ECLK ERER +HYL   
Sbjct: 189 GTLEKYEEDFESFMLQDTASYYSRKASRWTEEDSCPDYMIKVEECLKMERERVTHYLHSI 248

Query: 229 SNRKLA 234
           +  KL 
Sbjct: 249 TEPKLV 254

Arabidopsis thaliana (taxid: 3702)

>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/244 (43%), Positives = 153/244 (62%), Gaps = 22/244 (9%)

Query: 9   EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
           EEGW  ++ G  KL+RI E L E  F+   Y+ LYTI+YD+C +  +P +D    ++Y+K
Sbjct: 18  EEGWSVMKTGVAKLQRILEDLSEPPFDPGQYINLYTIIYDMCLQ--QPPNDYS-QELYNK 74

Query: 69  YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA 128
           Y+ ++  Y    VLP +RE+H EY +LREL+K WANHK L +WLSR    L   Y+ R  
Sbjct: 75  YRGVVDHYNKETVLPSMRERHGEY-MLRELVKRWANHKILVRWLSRFCFYLDRFYVARRG 133

Query: 129 LPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE----- 183
           LP LN  G + F DLV++ ++ + KD ++ALI +EREGE+IDRTLVKNV+D++       
Sbjct: 134 LPTLNDVGFTSFHDLVYQEIQSEAKDVLLALIHKEREGEQIDRTLVKNVIDVYCGNGVGQ 193

Query: 184 ------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSN 230
                       ++D A+YYSRKAS W  +DS  DY++   ECLK E+ER ++YL  ++ 
Sbjct: 194 MVIYEEDFESFLLQDTASYYSRKASRWSQEDSCPDYMLKAEECLKLEKERVTNYLHSTTE 253

Query: 231 RKLA 234
            KL 
Sbjct: 254 PKLV 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIE8|CLL3_ARATH Cullin-like protein 3 OS=Arabidopsis thaliana GN=At1g59800 PE=3 SV=2

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/243 (42%), Positives = 148/243 (60%), Gaps = 26/243 (10%)

Query: 12  WDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQ 71
           W  +++GFTKL R+ EG  E AFN E  MM++T  Y IC         ++P Q+YDKY++
Sbjct: 13  WSNIQQGFTKLIRMIEGESEPAFNQEIMMMMHTATYRICAY-------KNPQQLYDKYRE 65

Query: 72  ILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPE 131
           ++ +Y    VLP LREKHDE  +LREL K W  HK L +  SR  + L   ++ +  LP 
Sbjct: 66  LIENYAIQTVLPSLREKHDEC-MLRELAKRWNAHKLLVRLFSRRLVYLDDSFLSKKGLPS 124

Query: 132 LNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE-------- 183
           L   G++CFRD V+  M+    +A++ALI +EREGE+IDR LV+NV+D+FVE        
Sbjct: 125 LREVGLNCFRDQVYREMQSMAAEAILALIHKEREGEQIDRELVRNVIDVFVENGMGTLKK 184

Query: 184 ---------IEDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKL 233
                    ++D A+YYS KAS WI ++S  DY +   +CL+ ERER +HYL P++  KL
Sbjct: 185 YEEDFERLMLQDTASYYSSKASRWIQEESCLDYTLKPQQCLQRERERVTHYLHPTTEPKL 244

Query: 234 ANI 236
             +
Sbjct: 245 FEV 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1

 Score =  188 bits (477), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 113/286 (39%), Positives = 161/286 (56%), Gaps = 33/286 (11%)

Query: 1   MKRKASDSEEGWDYLERGFTKLKRIFEGL-QERAFNLEDYMMLYTIVYDICCKPARPHHD 59
           M +K S  E GW  +E G  KL++I E +  E  F+    M LYT V+++C +  +P +D
Sbjct: 1   MAKKDSVLEAGWSVMEAGVAKLQKILEEVPDEPPFDPVQRMQLYTTVHNLCTQ--KPPND 58

Query: 60  EDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPL 119
               Q+YD+Y  +  DY    VLP +REKH EY +LREL+K WAN K L +WLS  F  L
Sbjct: 59  YS-QQIYDRYGGVYVDYNKQTVLPAIREKHGEY-MLRELVKRWANQKILVRWLSHFFEYL 116

Query: 120 QAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLD 179
              Y  R + P L+A G   FRDLV++ ++ K KDAV+ALI +EREGE+IDR L+KNV+D
Sbjct: 117 DRFYTRRGSHPTLSAVGFISFRDLVYQELQSKAKDAVLALIHKEREGEQIDRALLKNVID 176

Query: 180 LFVE-----------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERA 221
           ++                   +ED A+YYSR AS W  ++S  DY++   E L+ E+ER 
Sbjct: 177 VYCGNGMGELVKYEEDFESFLLEDSASYYSRNASRWNQENSCPDYMIKAEESLRLEKERV 236

Query: 222 SHYLQPSSNRKLANIL----------SFMQKGEFRCRQLLRGHKLD 257
           ++YL  ++  KL   +            ++     CR LLR  K+D
Sbjct: 237 TNYLHSTTEPKLVAKVQNELLVVVAKQLIENEHSGCRALLRDDKMD 282

Core component of multiple SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes. Involved in ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 99/194 (51%), Gaps = 22/194 (11%)

Query: 63  DQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAG 122
           D +Y+  ++++  ++ + V   + E  DE  LL EL  SW NHK     +  + + +   
Sbjct: 67  DLLYNNLKKMVDKHLKA-VAKTVSESIDEKFLL-ELNSSWINHKTSMLMIRDILMYMDRN 124

Query: 123 YIPRMALPELNAFGISCFRDLVF--EAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
           Y+ +  L  +   G+  FRD V     +KD++ + +++++ +EREGE IDR L+KN++ +
Sbjct: 125 YVKQNNLSSVFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKEREGEVIDRILIKNIVQM 184

Query: 181 FVE---------IED--------MAAYYSRKASNWILQDSF-DYLVNVGECLKNERERAS 222
            ++         IED         +++Y  ++   I   S  DY+  V  CLK E ER S
Sbjct: 185 LIDLGVNSKNVYIEDFEKPLLLKTSSHYQAQSQTLIQTCSCPDYMKKVEICLKEELERVS 244

Query: 223 HYLQPSSNRKLANI 236
           HYL  SS  KL  +
Sbjct: 245 HYLDSSSEPKLKEV 258

Probable core component of cullin-based SCF-like E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit.

Dictyostelium discoideum (taxid: 44689)

>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 121/270 (44%), Gaps = 31/270 (11%)

Query: 13  DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
           +Y +  + KL      +Q      +NLE+   LY  V ++C     P        +Y + 
Sbjct: 57  NYTQDTWRKLHEAVRAVQSSTSIRYNLEE---LYQAVENLCSHKVSP-------MLYKQL 106

Query: 70  QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYI-PRMA 128
           +Q   D++ +++LP+  +  D    L+++   W +H      +  +FL L   Y+     
Sbjct: 107 RQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNST 166

Query: 129 LPELNAFGISCFRDLVF--EAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE--- 183
           LP +   G+  FR  +   + ++ K  D ++ LI+RER GE +DR+L++++L +  +   
Sbjct: 167 LPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQV 226

Query: 184 ---------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
                    +E+    Y+ +    + +    +YL +V + L+ E +R   YL  S+ + L
Sbjct: 227 YKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPL 286

Query: 234 ANILSFMQKGEFRCRQLLRG--HKLDGHSI 261
              +     GE     L +G  H LD + +
Sbjct: 287 IACVEKQLLGEHLTAILQKGLDHLLDENRV 316

Core component of multiple cullin-RING-based E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. As a scaffold protein may contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1. The functional specificity of the E3 ubiquitin-protein ligase complex depends on the variable substrate recognition component. DCX(DET1-COP1) directs ubiquitination of JUN. DCX(DDB2) directs ubiquitination of XPC. In association with RBX1, DDB1 and DDB2 is required for histone H3 and histone H4 ubiquitination in response to ultraviolet and may be important for subsequent DNA repair. DCX(DTL) plays a role in PCNA-dependent polyubiquitination of CDT1 and MDM2-dependent ubiquitination of TP53 in response to radiation-induced DNA damage and during DNA replication. In association with DDB1 and SKP2 probably is involved in ubiquitination of CDKN1B/p27kip. Is involved in ubiquitination of HOXA9.

Homo sapiens (taxid: 9606)

>sp|Q24311|CUL1_DROME Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 22/189 (11%)

Query: 12  WDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCK-PARPHHDEDPD------- 63
           W  L  G   + ++FE   E++     YM  YT VYD C    A P              
Sbjct: 20  WSELVEG---IMQVFE--HEKSLTRSQYMRFYTHVYDYCTSVSAAPSGRSSGKTGGAQLV 74

Query: 64  --QMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             ++YD+ +Q L  Y+ S++L   +    E  LL    K W +++F +  L  +   L  
Sbjct: 75  GKKLYDRLEQFLKSYL-SELLTKFKAISGEEVLLSRYTKQWKSYQFSSTVLDGICNYLNR 133

Query: 122 GYIPR------MALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVK 175
            ++ R        + ++    +  ++  +F+ + + V  AV+  I+ ER+G+ I+R+LV+
Sbjct: 134 NWVKRECEEGQKGIYKIYRLALVAWKGHLFQVLNEPVTKAVLKSIEEERQGKLINRSLVR 193

Query: 176 NVLDLFVEI 184
           +V++ +VE+
Sbjct: 194 DVIECYVEL 202

Core component of multiple SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes, which mediates the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as a rigid scaffold that organizes the SKP1-F-box protein and RBX1 subunits. May contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme.

Drosophila melanogaster (taxid: 7227)

>sp|Q9WTX6|CUL1_MOUSE Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 59/251 (23%)

Query: 39  YMMLYTIVYDICCK-------------PARPHHDEDPD-------QMYDKYQQILADYMP 78
           YM LYT VY+ C               P++    + P        ++Y + ++ L +Y+ 
Sbjct: 42  YMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLT 101

Query: 79  SKVLPYLREKHDEYD--LLRELLKSWANHKFLAKWLSRVFLPLQAGYI------PRMALP 130
           +     L++  D  D  +L+   + W +++F +K L+ +   L   ++       R  + 
Sbjct: 102 N----LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 157

Query: 131 ELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE------- 183
           E+ +  +  +RD +F  +  +V +AV+ LI++ER GE I+  L+  V+  +VE       
Sbjct: 158 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 217

Query: 184 -------------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
                              + D   +Y+R+++ ++ Q+   +Y+      L  E+ R   
Sbjct: 218 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 277

Query: 224 YLQPSSNRKLA 234
           YL  S+  +LA
Sbjct: 278 YLHESTQDELA 288

Core component of multiple cullin-RING-based SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes, which mediate the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as a rigid scaffold that organizes the SKP1-F-box protein and RBX1 subunits. May contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1. The functional specificity of the SCF complex depends on the F-box protein as substrate recognition component. SCF(BTRC) and SCF(FBXW11) direct ubiquitination of CTNNB1 and participate in Wnt signaling. SCF(FBXW11) directs ubiquitination of phosphorylated NFKBIA. SCF(BTRC) directs ubiquitination of NFKBIB, NFKBIE, ATF4, SMAD3, SMAD4, CDC25A, FBXO5 and probably NFKB2. SCF(SKP2) directs ubiquitination of phosphorylated CDKN1B/p27kip and is involved in regulation of G1/S transition. SCF(SKP2) directs ubiquitination of ORC1, CDT1, RBL2, ELF4, CDKN1A, RAG2, FOXO1A, and probably MYC and TAL1. SCF(FBXW7) directs ubiquitination of cyclin E, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1. SCF(FBXW2) directs ubiquitination of GCM1. SCF(FBXO32) directs ubiquitination of MYOD1. SCF(FBXO7) directs ubiquitination of BIRC2 and DLGAP5. SCF(FBXO33) directs ubiquitination of YBX1. SCF(FBXO11) does not seem to direct ubiquitination of TP53 (By similarity). SCF(BTRC) mediates the ubiquitination of NFKBIA at 'Lys-21' and 'Lys-22'; the degradation frees the associated NFKB1-RELA dimer to translocate into the nucleus and to activate transcription. SCF(Cyclin F) directs ubiquitination of CP110.

Mus musculus (taxid: 10090)

>sp|Q5R4G6|CUL1_PONAB Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 109/251 (43%), Gaps = 59/251 (23%)

Query: 39  YMMLYTIVYDICCK-------------PARPHHDEDPD-------QMYDKYQQILADYMP 78
           YM LYT VY+ C               P++    + P        ++Y + ++ L +Y+ 
Sbjct: 42  YMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLT 101

Query: 79  SKVLPYLREKHDEYD--LLRELLKSWANHKFLAKWLSRVFLPLQAGYI------PRMALP 130
           +     L++  D  D  +L+   + W +++F +K L+ +   L   ++       R  + 
Sbjct: 102 N----LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 157

Query: 131 ELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE------- 183
           E+ +  +  +RD +F  +  +V +AV+ LI++ER GE I+  L+  V+  +VE       
Sbjct: 158 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 217

Query: 184 -------------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
                              + D   +Y+R+++ ++ Q+   +Y+      L  E+ R   
Sbjct: 218 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 277

Query: 224 YLQPSSNRKLA 234
           YL  S+  +LA
Sbjct: 278 YLHESTQDELA 288

Core component of multiple cullin-RING-based SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes, which mediate the ubiquitination of proteins involved in cell cycle progression, signal transduction and transcription. In the SCF complex, serves as a rigid scaffold that organizes the SKP1-F-box protein and RBX1 subunits. May contribute to catalysis through positioning of the substrate and the ubiquitin-conjugating enzyme. The E3 ubiquitin-protein ligase activity of the complex is dependent on the neddylation of the cullin subunit and is inhibited by the association of the deneddylated cullin subunit with TIP120A/CAND1. The functional specificity of the SCF complex depends on the F-box protein as substrate recognition component. SCF(BTRC) and SCF(FBXW11) direct ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(BTRC) and SCF(FBXW11) direct ubiquitination of phosphorylated NFKBIA. SCF(BTRC) directs ubiquitination of NFKBIB, NFKBIE, ATF4, SMAD3, SMAD4, CDC25A, FBXO5 and probably NFKB2. SCF(SKP2) directs ubiquitination of phosphorylated CDKN1B/p27kip and is involved in regulation of G1/S transition. SCF(SKP2) directs ubiquitination of ORC1, CDT1, RBL2, ELF4, CDKN1A, RAG2, FOXO1A, and probably MYC and TAL1. SCF(FBXW7) directs ubiquitination of cyclin E, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1. SCF(FBXW2) directs ubiquitination of GCM1. SCF(FBXO32) directs ubiquitination of MYOD1. SCF(FBXO7) directs ubiquitination of BIRC2 and DLGAP5. SCF(FBXO33) directs ubiquitination of YBX1. SCF(FBXO11) does not seem to direct ubiquitination of TP53. SCF(BTRC) mediates the ubiquitination of NFKBIA at 'Lys-21' and 'Lys-22'; the degradation frees the associated NFKB1-RELA dimer to translocate into the nucleus and to activate transcription. SCF(Cyclin F) directs ubiquitination of CP110.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
297814051	738	ATCUL1 [Arabidopsis lyrata subsp. lyrata	0.898	0.346	0.496	3e-70
18411983	738	cullin 1 [Arabidopsis thaliana] gi|79324	0.898	0.346	0.493	1e-69
224123204	744	predicted protein [Populus trichocarpa]	0.894	0.342	0.501	3e-69
225432272	744	PREDICTED: cullin-1 isoform 1 [Vitis vin	0.894	0.342	0.494	1e-68
356563946	709	PREDICTED: cullin-1-like isoform 2 [Glyc	0.894	0.359	0.494	2e-68
356563944	744	PREDICTED: cullin-1-like isoform 1 [Glyc	0.894	0.342	0.494	2e-68
386688470	744	cullin 1-like protein B [Prunus avium]	0.894	0.342	0.491	4e-68
255551707	744	Cullin-1, putative [Ricinus communis] gi	0.894	0.342	0.484	5e-68
451320835	744	CUL1 protein [Pyrus x bretschneideri]	0.894	0.342	0.494	1e-67
449450670	744	PREDICTED: cullin-1-like [Cucumis sativu	0.894	0.342	0.491	2e-67

>gi|297814051|ref|XP_002874909.1| ATCUL1 [Arabidopsis lyrata subsp. lyrata] gi|297320746|gb|EFH51168.1| ATCUL1 [Arabidopsis lyrata subsp. lyrata]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 143/288 (49%), Positives = 189/288 (65%), Gaps = 32/288 (11%)

Query: 1   MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDE 60
           M+RK  D E+GWDY++ G TKLKRI EGL E AF+ E YMMLYT +Y++C +  +P HD 
Sbjct: 1   MERKTIDLEQGWDYMQTGITKLKRILEGLPEPAFDSEQYMMLYTTIYNMCTQ--KPPHDY 58

Query: 61  DPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQ 120
              Q+YDKY++   +Y+ S VLP LREKHDEY +LREL+K W+NHK + +WLSR F  L 
Sbjct: 59  S-QQLYDKYREAFEEYINSTVLPALREKHDEY-MLRELVKRWSNHKVMVRWLSRFFYYLD 116

Query: 121 AGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
             +I R +LP LN  G++CFRDLV+  +  KVK+AV+AL+D+EREGE+IDR L+KNVLD+
Sbjct: 117 RYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKEAVIALVDKEREGEQIDRALLKNVLDI 176

Query: 181 FVEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERAS 222
           +VEI                 +D ++YYSRKAS+WI +DS  DY++   ECLK ERER +
Sbjct: 177 YVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVT 236

Query: 223 HYLQPSSNRKLANIL----------SFMQKGEFRCRQLLRGHKLDGHS 260
           HYL  SS  KL   +            ++K    CR LLR  K+D  S
Sbjct: 237 HYLHSSSEPKLVEKVQHELLVVYASQLLEKEHSGCRALLRDDKVDDLS 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411983|ref|NP_567243.1| cullin 1 [Arabidopsis thaliana] gi|79324981|ref|NP_001031575.1| cullin 1 [Arabidopsis thaliana] gi|79324983|ref|NP_001031576.1| cullin 1 [Arabidopsis thaliana] gi|334186321|ref|NP_001190661.1| cullin 1 [Arabidopsis thaliana] gi|68052236|sp|Q94AH6.1|CUL1_ARATH RecName: Full=Cullin-1 gi|15028161|gb|AAK76704.1| putative cullin 1 protein [Arabidopsis thaliana] gi|22136936|gb|AAM91812.1| putative cullin 1 protein [Arabidopsis thaliana] gi|30524960|emb|CAC85264.1| cullin 1 [Arabidopsis thaliana] gi|222423687|dbj|BAH19810.1| AT4G02570 [Arabidopsis thaliana] gi|332656794|gb|AEE82194.1| cullin 1 [Arabidopsis thaliana] gi|332656795|gb|AEE82195.1| cullin 1 [Arabidopsis thaliana] gi|332656796|gb|AEE82196.1| cullin 1 [Arabidopsis thaliana] gi|332656797|gb|AEE82197.1| cullin 1 [Arabidopsis thaliana]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 142/288 (49%), Positives = 187/288 (64%), Gaps = 32/288 (11%)

Query: 1   MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDE 60
           M+RK  D E+GWDY++ G TKLKRI EGL E AF+ E YMMLYT +Y++C +  +P HD 
Sbjct: 1   MERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQ--KPPHDY 58

Query: 61  DPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQ 120
              Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL K W+NHK + +WLSR F  L 
Sbjct: 59  -SQQLYDKYREAFEEYINSTVLPALREKHDEF-MLRELFKRWSNHKVMVRWLSRFFYYLD 116

Query: 121 AGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDL 180
             +I R +LP LN  G++CFRDLV+  +  KVK AV+AL+D+EREGE+IDR L+KNVLD+
Sbjct: 117 RYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDI 176

Query: 181 FVEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERAS 222
           +VEI                 +D ++YYSRKAS+WI +DS  DY++   ECLK ERER +
Sbjct: 177 YVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVA 236

Query: 223 HYLQPSSNRKLANIL----------SFMQKGEFRCRQLLRGHKLDGHS 260
           HYL  SS  KL   +            ++K    CR LLR  K+D  S
Sbjct: 237 HYLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLS 284

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123204|ref|XP_002330364.1| predicted protein [Populus trichocarpa] gi|222871568|gb|EEF08699.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 144/287 (50%), Positives = 191/287 (66%), Gaps = 32/287 (11%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           +RK  D E+GW+++++G TKLK I EGLQE  F+ EDYMMLYT +Y++C +  +P HD  
Sbjct: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLQEPQFSSEDYMMLYTTIYNMCTQ--KPPHDY- 61

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL+K WANHK + +WLSR F  L  
Sbjct: 62  SQQLYDKYRESFEEYITSTVLPSLREKHDEF-MLRELVKRWANHKVMVRWLSRFFHYLDR 120

Query: 122 GYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
            +I R +LP LN  G++CFRDLV++ +  KV+DAV++LID+EREGE+IDR L+KNVLD+F
Sbjct: 121 YFIARRSLPPLNEVGLTCFRDLVYQELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 182 VEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
           VEI                 +D AAYYSRKASNWIL DS  DY++   ECLK E++R SH
Sbjct: 181 VEIGMGQMDYYENDFEAAMLKDTAAYYSRKASNWILDDSCPDYMLKAEECLKREKDRVSH 240

Query: 224 YLQPSSNRKLA-----NILS-----FMQKGEFRCRQLLRGHKLDGHS 260
           YL  SS  KL       +LS      ++K    C  LLR  K++  S
Sbjct: 241 YLHSSSEPKLLEKVQHELLSVYATQLLEKEHSGCHALLRDDKVEDLS 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432272|ref|XP_002272195.1| PREDICTED: cullin-1 isoform 1 [Vitis vinifera] gi|297736859|emb|CBI26060.3| unnamed protein product [Vitis vinifera]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/287 (49%), Positives = 191/287 (66%), Gaps = 32/287 (11%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           +RK  D E+GW+++++G TKLK I EGL E  F+ EDYMMLYT +Y++C +  +P HD  
Sbjct: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQ--KPPHDYS 62

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             Q+YDKY++   +Y+ + VLP LREKHDE+ +LREL+K W+NHK + +WLSR F  L  
Sbjct: 63  -QQLYDKYRESFEEYITTTVLPSLREKHDEF-MLRELVKRWSNHKVMVRWLSRFFHYLDR 120

Query: 122 GYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
            +I R +LP LN  G++CFRDLV++ +  KV+DAV++LID+EREGE+IDR L+KNVLD+F
Sbjct: 121 YFIARRSLPALNEVGLTCFRDLVYQELYSKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 182 VEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
           VEI                 +D AAYYSRKASNWIL+DS  DY++   ECLK E++R SH
Sbjct: 181 VEIGMGQMEQYENDFEAAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 240

Query: 224 YLQPSSNRKL-----ANILS-----FMQKGEFRCRQLLRGHKLDGHS 260
           YL  SS  KL       +LS      ++K    C  LLR  K+D  S
Sbjct: 241 YLHSSSEPKLLEKVQNELLSVFANQLLEKEHSGCHALLRDDKVDDLS 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563946|ref|XP_003550218.1| PREDICTED: cullin-1-like isoform 2 [Glycine max]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/287 (49%), Positives = 191/287 (66%), Gaps = 32/287 (11%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           +RK  D E+GWD++++G TKLK I EGL E  F+ EDYMMLYT +Y++C +  +P HD  
Sbjct: 5   ERKTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQ--KPPHDYS 62

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL+K WANHK + +WLSR F  L  
Sbjct: 63  -QQLYDKYKESFEEYIVSTVLPSLREKHDEF-MLRELVKRWANHKIMVRWLSRFFHYLDR 120

Query: 122 GYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
            +I R +LP LN  G++CFRDLV++ +  KV+DAV++LID+EREGE+IDR L+KNVLD+F
Sbjct: 121 YFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 182 VEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
           VEI                 +D +AYYSRKASNWIL+DS  DY++   ECLK E++R +H
Sbjct: 181 VEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAH 240

Query: 224 YLQPSSNRKLA-----NILS-----FMQKGEFRCRQLLRGHKLDGHS 260
           YL  SS  KL       +LS      ++K    C  LLR  K++  S
Sbjct: 241 YLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLS 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563944|ref|XP_003550217.1| PREDICTED: cullin-1-like isoform 1 [Glycine max]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 142/287 (49%), Positives = 191/287 (66%), Gaps = 32/287 (11%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           +RK  D E+GWD++++G TKLK I EGL E  F+ EDYMMLYT +Y++C +  +P HD  
Sbjct: 5   ERKTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQ--KPPHDY- 61

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL+K WANHK + +WLSR F  L  
Sbjct: 62  SQQLYDKYKESFEEYIVSTVLPSLREKHDEF-MLRELVKRWANHKIMVRWLSRFFHYLDR 120

Query: 122 GYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
            +I R +LP LN  G++CFRDLV++ +  KV+DAV++LID+EREGE+IDR L+KNVLD+F
Sbjct: 121 YFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 182 VEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
           VEI                 +D +AYYSRKASNWIL+DS  DY++   ECLK E++R +H
Sbjct: 181 VEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAH 240

Query: 224 YLQPSSNRKLA-----NILS-----FMQKGEFRCRQLLRGHKLDGHS 260
           YL  SS  KL       +LS      ++K    C  LLR  K++  S
Sbjct: 241 YLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLS 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|386688470|gb|AFJ21665.1| cullin 1-like protein B [Prunus avium]

 Score =  264 bits (674), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 141/287 (49%), Positives = 190/287 (66%), Gaps = 32/287 (11%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           +RK  D E+GW+++++G TKLK I EGL E  F+ EDYMMLYT +Y++C +  +P HD  
Sbjct: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQ--KPPHDYS 62

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL+K W NHK + +WLSR F  L  
Sbjct: 63  -QQLYDKYKESFEEYITSTVLPSLREKHDEF-MLRELVKRWTNHKIMVRWLSRFFHYLDR 120

Query: 122 GYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
            +I R +LP LN  G++CFRDLV++ +  KV+DAV++LID+EREGE+IDR L+KNVLD+F
Sbjct: 121 YFIARRSLPPLNEVGLTCFRDLVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 182 VEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
           VEI                 +D AAYYSRKASNWIL+DS  DY++   ECL+ E++R +H
Sbjct: 181 VEIGMGHMDHYENDFEADMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLRREKDRVAH 240

Query: 224 YLQPSSNRKLA-----NILS-----FMQKGEFRCRQLLRGHKLDGHS 260
           YL  SS  KL       +LS      ++K    C  LLR  K+D  S
Sbjct: 241 YLHSSSEPKLLEKVQHELLSVYATQLLEKEHSGCHALLRDDKVDDLS 287

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis]

 Score =  263 bits (673), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 139/287 (48%), Positives = 189/287 (65%), Gaps = 32/287 (11%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           +RK  D E+GW+++++G TKLK I EGL E  F+ EDYMMLYT +Y++C +  +P HD  
Sbjct: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQ--KPPHDYS 62

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL+K WANHK + +WLSR F  L  
Sbjct: 63  -QQLYDKYRESFEEYITSTVLPSLREKHDEF-MLRELVKRWANHKVMVRWLSRFFHYLDR 120

Query: 122 GYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
            +I R +LP LN  G++CFRDLV++ +  KV+DAV++LID+EREGE+IDR L+KNVLD+F
Sbjct: 121 YFIARRSLPPLNEVGLTCFRDLVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 182 VEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
           VEI                 +D  +YYSRKASNWIL+DS  DY++   ECLK E++R SH
Sbjct: 181 VEIGMGQMDYYENDFEVAMLKDTGSYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 240

Query: 224 YLQPSSNRKLANILSF----------MQKGEFRCRQLLRGHKLDGHS 260
           YL  SS  KL   + +          ++K    C  LLR  K++  S
Sbjct: 241 YLHSSSEPKLLEKVQYELLSVFANQLLEKEHSGCHALLRDDKVEDLS 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451320835|emb|CCH26221.1| CUL1 protein [Pyrus x bretschneideri]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/287 (49%), Positives = 190/287 (66%), Gaps = 32/287 (11%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           +RK  D E+GW+++++G TKLK I EGL E  F+ EDYMMLYT +Y++C +  +P HD  
Sbjct: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQ--KPPHDYS 62

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL+K W NHK + +WLSR F  L  
Sbjct: 63  -QQLYDKYRESFEEYITSTVLPSLREKHDEF-MLRELVKRWTNHKIMVRWLSRFFHYLDR 120

Query: 122 GYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
            +I R +LP LN  G++CFRDLV++ +K KV+ AV++LID+EREGE+IDR L+KNVLD+F
Sbjct: 121 YFIARRSLPPLNEVGLTCFRDLVYQELKPKVRGAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 182 VEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
           VEI                 +D AAYYSRKASNWIL+DS  DY++   ECLK E++R S+
Sbjct: 181 VEIGMGQMGHYENDFETDMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSN 240

Query: 224 YLQPSSNRKLA-----NILS-----FMQKGEFRCRQLLRGHKLDGHS 260
           YL  SS  KL       +LS      ++K    C  LLR  K+D  S
Sbjct: 241 YLHSSSEPKLLEKVQHELLSVYATQLLEKEHSGCHALLRDDKVDDLS 287

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450670|ref|XP_004143085.1| PREDICTED: cullin-1-like [Cucumis sativus] gi|449517495|ref|XP_004165781.1| PREDICTED: cullin-1-like [Cucumis sativus]

 Score =  261 bits (668), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/287 (49%), Positives = 190/287 (66%), Gaps = 32/287 (11%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           +RK  D E+GW+++++G TKLK I EGL E  F+ EDYMMLYT +Y++C +  +P HD  
Sbjct: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQ--KPPHDYS 62

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL+K W NHK + +WLSR F  L  
Sbjct: 63  -QQLYDKYRESFEEYITSMVLPSLREKHDEF-MLRELVKRWTNHKVMVRWLSRFFHYLDR 120

Query: 122 GYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLF 181
            +I R +LP LN  G++CFR+LV++ +  KV+DAV++LID+EREGE+IDR L+KNVLD+F
Sbjct: 121 YFIARRSLPPLNEVGLTCFRELVYKELNSKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 182 VEI-----------------EDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
           VEI                 +D AAYYSRKASNWIL+DS  DY++   ECLK E++R SH
Sbjct: 181 VEIGMGQMDYYENDFEAAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 240

Query: 224 YLQPSSNRKLA-----NILS-----FMQKGEFRCRQLLRGHKLDGHS 260
           YL  SS  KL       +LS      ++K    C  LLR  K++  S
Sbjct: 241 YLHSSSEPKLLEKVQHELLSVYATQLLEKEHSGCHALLRDDKVEDLS 287

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	285
TAIR|locus:2132377	738	CUL1 "cullin 1" [Arabidopsis t	0.708	0.273	0.483	3.3e-63
TAIR|locus:2025881	374	AT1G59790 [Arabidopsis thalian	0.768	0.585	0.424	2.1e-45
TAIR|locus:2018645	721	AT1G43140 [Arabidopsis thalian	0.677	0.267	0.395	3.3e-45
TAIR|locus:2024755	742	CUL2 "cullin 2" [Arabidopsis t	0.705	0.270	0.387	1.2e-42
TAIR|locus:2025941	255	AT1G59800 [Arabidopsis thalian	0.736	0.823	0.361	2.6e-31
DICTYBASE|DDB_G0284903	769	culC "cullin C" [Dictyostelium	0.568	0.210	0.222	6.3e-07
MGI|MGI:1914487	759	Cul4a "cullin 4A" [Mus musculu	0.807	0.303	0.210	7.3e-06
UNIPROTKB|A6NE76	234	CUL4B "Cullin-4B" [Homo sapien	0.715	0.871	0.213	2.5e-05
UNIPROTKB|Q13619	759	CUL4A "Cullin-4A" [Homo sapien	0.838	0.314	0.218	2.7e-05
MGI|MGI:1919834	970	Cul4b "cullin 4B" [Mus musculu	0.715	0.210	0.217	0.0001

TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 100/207 (48%), Positives = 134/207 (64%)

Query:     1 MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDE 60
             M+RK  D E+GWDY++ G TKLKRI EGL E AF+ E YMMLYT +Y++C +  +P HD 
Sbjct:     1 MERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQ--KPPHDY 58

Query:    61 DPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQ 120
                Q+YDKY++   +Y+ S VLP LREKHDE+ +LREL K W+NHK + +WLSR F  L 
Sbjct:    59 S-QQLYDKYREAFEEYINSTVLPALREKHDEF-MLRELFKRWSNHKVMVRWLSRFFYYLD 116

Query:   121 AGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDL 180
               +I R +LP LN  G++CFRDLV+  +  KVK AV+AL             L+KNVLD+
Sbjct:   117 RYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDI 176

Query:   181 FVEIE-DMAAYYSRKASNWILQDSFDY 206
             +VEI       Y     +++LQD+  Y
Sbjct:   177 YVEIGMGQMERYEEDFESFMLQDTSSY 203

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS

GO:0010265 "SCF complex assembly" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009790 "embryo development" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048316 "seed development" evidence=RCA

GO:0048366 "leaf development" evidence=IMP;RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

TAIR|locus:2025881 AT1G59790 [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 104/245 (42%), Positives = 145/245 (59%)

Query:     9 EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
             EEGW  +++G TKL RI EG  E  F   +   LYTI+YD+C +  R  + +   Q+Y+K
Sbjct:    15 EEGWSNIQKGITKLIRILEGEPEPTFYFSECFKLYTIIYDMCVQ--RSDYSQ---QLYEK 69

Query:    69 YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPR-- 126
             Y++++ DY    VLP LREKHDE D+LREL+K W NHK + KWLS+ F+ +    + R  
Sbjct:    70 YRKVIEDYTIQTVLPSLREKHDE-DMLRELVKRWNNHKIMVKWLSKFFVYIDRHLVRRSK 128

Query:   127 MALPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVE--- 183
             + +P L+  G++CF DLV+  M+   K+ V+AL             LVKNVLD++VE   
Sbjct:   129 IPIPSLDEVGLTCFLDLVYCEMQSTAKEVVIALIHKEREGEQIDRALVKNVLDIYVENGM 188

Query:   184 --------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPS 228
                           ++D A+YYSRKAS W  +DS  DY++ V ECLK ERER +HYL   
Sbjct:   189 GTLEKYEEDFESFMLQDTASYYSRKASRWTEEDSCPDYMIKVEECLKMERERVTHYLHSI 248

Query:   229 SNRKL 233
             +  KL
Sbjct:   249 TEPKL 253

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 79/200 (39%), Positives = 117/200 (58%)

Query:     9 EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
             EEGW  ++ G  KL+RI E L E  F+   Y+ LYTI+YD+C +  +P +D    ++Y+K
Sbjct:    18 EEGWSVMKTGVAKLQRILEDLSEPPFDPGQYINLYTIIYDMCLQ--QPPNDYS-QELYNK 74

Query:    69 YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA 128
             Y+ ++  Y    VLP +RE+H EY +LREL+K WANHK L +WLSR    L   Y+ R  
Sbjct:    75 YRGVVDHYNKETVLPSMRERHGEY-MLRELVKRWANHKILVRWLSRFCFYLDRFYVARRG 133

Query:   129 LPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVE--IED 186
             LP LN  G + F DLV++ ++ + KD ++AL            TLVKNV+D++    +  
Sbjct:   134 LPTLNDVGFTSFHDLVYQEIQSEAKDVLLALIHKEREGEQIDRTLVKNVIDVYCGNGVGQ 193

Query:   187 MAAYYSRKASNWILQDSFDY 206
             M  Y      +++LQD+  Y
Sbjct:   194 MVIY-EEDFESFLLQDTASY 212

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
 Identities = 81/209 (38%), Positives = 115/209 (55%)

Query:     1 MKRKASDSEEGWDYLERGFTKLKRIFEGL-QERAFNLEDYMMLYTIVYDICCKPARPHHD 59
             M +K S  E GW  +E G  KL++I E +  E  F+    M LYT V+++C +  +P +D
Sbjct:     1 MAKKDSVLEAGWSVMEAGVAKLQKILEEVPDEPPFDPVQRMQLYTTVHNLCTQ--KPPND 58

Query:    60 EDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPL 119
                 Q+YD+Y  +  DY    VLP +REKH EY +LREL+K WAN K L +WLS  F  L
Sbjct:    59 YS-QQIYDRYGGVYVDYNKQTVLPAIREKHGEY-MLRELVKRWANQKILVRWLSHFFEYL 116

Query:   120 QAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLD 179
                Y  R + P L+A G   FRDLV++ ++ K KDAV+AL             L+KNV+D
Sbjct:   117 DRFYTRRGSHPTLSAVGFISFRDLVYQELQSKAKDAVLALIHKEREGEQIDRALLKNVID 176

Query:   180 LFVEIEDMAAY--YSRKASNWILQDSFDY 206
             ++     M     Y     +++L+DS  Y
Sbjct:   177 VYCG-NGMGELVKYEEDFESFLLEDSASY 204

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2025941 AT1G59800 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 80/221 (36%), Positives = 115/221 (52%)

Query:     9 EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDK 68
             E  W  +++GFTKL R+ EG  E AFN E  MM++T  Y IC         ++P Q+YDK
Sbjct:    10 EVEWSNIQQGFTKLIRMIEGESEPAFNQEIMMMMHTATYRICAY-------KNPQQLYDK 62

Query:    69 YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA 128
             Y++++ +Y    VLP LREKHDE  +LREL K W  HK L +  SR  + L   ++ +  
Sbjct:    63 YRELIENYAIQTVLPSLREKHDEC-MLRELAKRWNAHKLLVRLFSRRLVYLDDSFLSKKG 121

Query:   129 LPELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEIEDMA 188
             LP L   G++CFRD V+  M+    +A++AL             LV+NV+D+FVE   M 
Sbjct:   122 LPSLREVGLNCFRDQVYREMQSMAAEAILALIHKEREGEQIDRELVRNVIDVFVE-NGMG 180

Query:   189 AY--YSRKASNWILQDSFDYLVNVGECLKNERERASHYLQP 227
                 Y       +LQD+  Y  +       E     + L+P
Sbjct:   181 TLKKYEEDFERLMLQDTASYYSSKASRWIQEESCLDYTLKP 221

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

DICTYBASE|DDB_G0284903 culC "cullin C" [Dictyostelium discoideum (taxid:44689)]

 Score = 106 (42.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
 Identities = 39/175 (22%), Positives = 81/175 (46%)

Query:    13 DYLERGFTKLKRIFEGL-QERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQ 71
             D+ +R +  LK     + Q+ A NL  +  LY   Y++  +     H    D +Y+  ++
Sbjct:    24 DFPKRTWKLLKTAMRQIHQQNASNLS-FEELYRNGYNMVLQK----HG---DLLYNNLKK 75

Query:    72 ILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPE 131
             ++  ++ + V   + E  DE  LL EL  SW NHK     +  + + +   Y+ +  L  
Sbjct:    76 MVDKHLKA-VAKTVSESIDEKFLL-ELNSSWINHKTSMLMIRDILMYMDRNYVKQNNLSS 133

Query:   132 LNAFGISCFRDLVFEA--MKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEI 184
             +   G+  FRD V     +KD++ + ++++             L+KN++ + +++
Sbjct:   134 VFDLGLYLFRDNVAHCSTIKDRLLNTLLSMVQKEREGEVIDRILIKNIVQMLIDL 188

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

MGI|MGI:1914487 Cul4a "cullin 4A" [Mus musculus (taxid:10090)]

 Score = 134 (52.2 bits), Expect = 7.3e-06, P = 7.3e-06
 Identities = 55/261 (21%), Positives = 115/261 (44%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KL    + +Q      +NLE+   LY  V ++C       H   P  +Y + 
Sbjct:    57 NYTQDTWRKLHEAVKAIQSSTSIRYNLEE---LYQAVENLCS------HKVSPT-LYKQL 106

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +Q+  D++ +++LP+  +  D    L+++   W +H      +  +FL L   Y+ + + 
Sbjct:   107 RQVCEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSM 166

Query:   129 LPELNAFGISCFRD-LVFEAM-KDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEI-- 184
             LP +   G+  FR+ ++ + M + K  D ++ L            +L++++L +  ++  
Sbjct:   167 LPSIWDMGLELFRNHIISDRMVQSKTIDGILLLIGRERSGEAVDRSLLRSLLSMLSDLQV 226

Query:   185 ----------EDMAAYYSRKASNWILQDSF--DYLVNVGECLKNERERASHYLQPSSNRK 232
                       E+    Y+ +    ++QD    +YL +V + L+ E +R   YL  S+ + 
Sbjct:   227 YKDSFELKFLEETNCLYAAEGQR-LMQDREVPEYLNHVSKRLEEEADRVITYLDHSTQKP 285

Query:   233 LANILSFMQKGEFRCRQLLRG 253
             L   +     GE     L +G
Sbjct:   286 LIACVEKQLLGEHLTAILQKG 306

GO:0006281 "DNA repair" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0019048 "virus-host interaction" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0051246 "regulation of protein metabolic process" evidence=IMP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISO

UNIPROTKB|A6NE76 CUL4B "Cullin-4B" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 48/225 (21%), Positives = 96/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct:    15 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 64

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct:    65 RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 124

Query:   129 LPELNAFGISCFRDLVFEAMK--DKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K  +K  D ++ L            +L++++L +   + D
Sbjct:   125 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSM---LSD 181

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
             +  Y       ++ + +  Y    G+ L  ERE    YL   + R
Sbjct:   182 LQIYQDSFEQRFLEETNRLYAAE-GQKLMQERE-VPEYLHHVNKR 224

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

UNIPROTKB|Q13619 CUL4A "Cullin-4A" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 59/270 (21%), Positives = 114/270 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KL      +Q      +NLE+   LY  V ++C       H   P  +Y + 
Sbjct:    57 NYTQDTWRKLHEAVRAVQSSTSIRYNLEE---LYQAVENLCS------HKVSP-MLYKQL 106

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYI-PRMA 128
             +Q   D++ +++LP+  +  D    L+++   W +H      +  +FL L   Y+     
Sbjct:   107 RQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNST 166

Query:   129 LPELNAFGISCFRD-LVFEAM-KDKVKDAVVALXXXXXXXXXXXXTLVKNVL----DLFV 182
             LP +   G+  FR  ++ + M + K  D ++ L            +L++++L    DL V
Sbjct:   167 LPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQV 226

Query:   183 E--------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
                      +E+    Y+ +    + +    +YL +V + L+ E +R   YL  S+ + L
Sbjct:   227 YKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPL 286

Query:   234 ANILSFMQKGEFRCRQLLRG--HKLDGHSI 261
                +     GE     L +G  H LD + +
Sbjct:   287 IACVEKQLLGEHLTAILQKGLDHLLDENRV 316

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0051246 "regulation of protein metabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IDA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0097193 "intrinsic apoptotic signaling pathway" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

MGI|MGI:1919834 Cul4b "cullin 4B" [Mus musculus (taxid:10090)]

 Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
 Identities = 49/225 (21%), Positives = 96/225 (42%)

Query:    13 DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
             +Y +  + KLK   E +Q      +NLE+   LY  V ++C       H    + +Y + 
Sbjct:   268 NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCS------HKISAN-LYKQL 317

Query:    70 QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
             +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct:   318 RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 377

Query:   129 LPELNAFGISCFRDLVFEAMKDKVK--DAVVALXXXXXXXXXXXXTLVKNVLDLFVEIED 186
             LP +   G+  FR  +    K + K  D ++ L            +L++++L +  +++ 
Sbjct:   378 LPSIWDMGLELFRAHIISDQKVQTKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQ- 436

Query:   187 MAAYYSRKASNWILQDSFDYLVNVGECLKNERERASHYLQPSSNR 231
                 Y        LQ++       G+ L  ERE    YL   + R
Sbjct:   437 ---IYQDSFEQQFLQETNRLYAAEGQKLMQERE-VPEYLHHVNKR 477

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA

GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=IMP

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	285
pfam00888	603	pfam00888, Cullin, Cullin family	1e-29
COG5647	773	COG5647, COG5647, Cullin, a subunit of E3 ubiquiti	9e-06

>gnl|CDD|216175 pfam00888, Cullin, Cullin family

 Score =  116 bits (293), Expect = 1e-29
 Identities = 73/261 (27%), Positives = 134/261 (51%), Gaps = 33/261 (12%)

Query: 21  KLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSK 80
           KL    + +  ++F+  DYM LYT VY+              +++Y++ ++ L +Y+ + 
Sbjct: 3   KLLDAIDQILLKSFSSLDYMELYTAVYNYVPHKL-------GEKLYNRLKEYLEEYVAAL 55

Query: 81  VLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCF 140
           +   L  ++D+  LL+   K W       K L+ +F+ L   Y+ R  L  +   G+  +
Sbjct: 56  LKSIL--ENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDGVYELGLDIW 113

Query: 141 RDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE----------------- 183
           R+ +F+ +KDK+ DA++ LI++ER GE IDR+L+KNVLD+FVE                 
Sbjct: 114 RESLFDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVYKEDFEKPF 173

Query: 184 IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKLAN------I 236
           +E  + +Y +++S ++ ++S  +Y+  V E L+ E ER   YL  S+ +KL        I
Sbjct: 174 LEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLIEVCEKVLI 233

Query: 237 LSFMQKGEFRCRQLLRGHKLD 257
              ++      ++LL   K++
Sbjct: 234 EKHLEFLHSEFQRLLDNEKIE 254

Length = 603

>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 44/202 (21%), Positives = 84/202 (41%), Gaps = 16/202 (7%)

Query: 7   DSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARP-----HHDED 61
           D E  W+++ER    + +IFE L +    L   M +YT +Y+ C    R          D
Sbjct: 19  DFESTWEFIERA---IGQIFERLYDSMAILS-LMEVYTKIYNYCTNKTRSLESDLRWKID 74

Query: 62  PDQMYDKYQQILADYMPSKVLPYLRE-KHDE-YDLLRELLKSWANHKFLAKWLSRVFLPL 119
              +  +  Q L DY  + +  Y R    +   + L EL+K W      A  ++ +FL +
Sbjct: 75  FIYLGSRLIQKLVDYAKNYIEEYNRGRSQENMEEFLDELVKFWNRFTKGATMINHLFLYM 134

Query: 120 QAGYIPRMALP-----ELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLV 174
              Y+ +         E+ +  +   +   F  + D + + ++  ++R R  + IDR  +
Sbjct: 135 DRVYLKKARYDKTLVFEVYSLCLVKEKIESFRLIVDSLINPLLYYVERYRALQSIDRKYI 194

Query: 175 KNVLDLFVEIEDMAAYYSRKAS 196
           ++  D+   +E  + Y     S
Sbjct: 195 EDAKDMLESLERPSDYKKENLS 216

Length = 773

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	285
KOG2166	725	consensus Cullins [Cell cycle control, cell divisi	100.0
KOG2284	728	consensus E3 ubiquitin ligase, Cullin 2 component	100.0
PF00888	588	Cullin: Cullin family; InterPro: IPR001373 Cullins	100.0
COG5647	773	Cullin, a subunit of E3 ubiquitin ligase [Posttran	100.0
KOG2285	777	consensus E3 ubiquitin ligase, Cullin 1 component	99.97
KOG2167	661	consensus Cullins [Cell cycle control, cell divisi	99.94
PF08539	158	HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol	97.91

>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=8.6e-36  Score=288.20  Aligned_cols=279  Identities=44%  Similarity=0.802  Sum_probs=240.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCCCCCChHHHHHHHHHHHHHHhhh
Q 041127            1 MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPHHDEDPDQMYDKYQQILADYMPS   79 (285)
Q Consensus         1 ~~~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~~~~~~~~Ly~~l~~~l~~~~~~   79 (285)
                      |-+...+++..|+.+++++..+..+.++.+...++..+++.+|+++|++|+ ++  +.+  ..+.||+++++.+.+|+..
T Consensus         3 ~~~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~--~~~--~~~~lY~~l~~~~~~yl~~   78 (725)
T KOG2166|consen    3 MAPKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKP--PHD--YSQQLYDKYREVIEEYLIQ   78 (725)
T ss_pred             ccccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccC--CCc--chHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999998876544445788889999999999999 53  222  3499999999999999999


Q ss_pred             hhhhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC-CCcchHHHH-HHHHHHHHHH-HHHHHHHHHH
Q 041127           80 KVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM-ALPELNAFG-ISCFRDLVFE-AMKDKVKDAV  156 (285)
Q Consensus        80 ~~~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~-~~~~i~~lg-l~~f~~~v~~-~i~~~l~~~i  156 (285)
                      .+.+....+.++. +|..+...|.+|+.++.+++++|+||||+|+++. +..++.+++ +.+|+..++. ++..++++++
T Consensus        79 ~~~~~~~~~~~~~-~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~al  157 (725)
T KOG2166|consen   79 TVLPALREKHDEY-MLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDAL  157 (725)
T ss_pred             HHHHHHHhcCcHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHH
Confidence            8877777767777 9999999999999999999999999999999976 556666666 8888888777 6999999999


Q ss_pred             HHHHHHHhcCCcCCHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHH
Q 041127          157 VALIDREREGEEIDRTLVKNVLDLFVEI-----------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNER  218 (285)
Q Consensus       157 l~~I~~~R~g~~i~~~~l~~~i~~l~~L-----------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~  218 (285)
                      +.+|..+|.|+.||+..|+++++|+..+                 ++|+.||..++++|+..++ ++|+.+|+.++.+|.
T Consensus       158 l~lI~~eR~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~  237 (725)
T KOG2166|consen  158 LALIHKEREGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYYSEEASEWLEENSCLDYLKKIEECLKEER  237 (725)
T ss_pred             HHHHHhhcccccccHHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999985                 9999999999999999888 999999999999999


Q ss_pred             HHhcccCCcchHHHHHHHHHH----------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127          219 ERASHYLQPSSNRKLANILSF----------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK  284 (285)
Q Consensus       219 ~r~~~yl~~~t~~~l~~~l~~----------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~  284 (285)
                      .|+..|++..+..++...++.          ++..++||..|+.+++.++|.+||.|++|++.|++ +.+.++++++
T Consensus       238 ~r~~~yl~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~  314 (725)
T KOG2166|consen  238 ERVTHYLHSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILPGLEPLASVFKQHVR  314 (725)
T ss_pred             HHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence            999977666554444444333          56778999999999999999999999999999976 5566666653

>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-35  Score=260.91  Aligned_cols=271  Identities=20%  Similarity=0.326  Sum_probs=240.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 041127            2 KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKV   81 (285)
Q Consensus         2 ~~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~   81 (285)
                      .|+.++|++.|..|.+.|.+|..      .+++++..|..-|+.||.+|..-  |.+  .|+.||+..+.++.+|+...+
T Consensus         5 kp~vv~fd~~w~~l~~si~~ii~------l~~i~~~~w~~~fsdvy~icvs~--p~p--l~erly~e~k~~i~~hvrq~~   74 (728)
T KOG2284|consen    5 KPKVVEFDKVWVQLRPSIIDIIN------LRPITNVQWHHKFSDVYDICVSI--PTP--LSERLYNEVKACIQEHVRQKR   74 (728)
T ss_pred             CceeeeHHHHHHHHHHHHHHHHh------ccchhccccccchhhHHHHHHhC--CCc--hhHHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999865      34788888999999999999955  344  999999999999999998765


Q ss_pred             hhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC------------------CcchHHHHHHHHHHH
Q 041127           82 LPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA------------------LPELNAFGISCFRDL  143 (285)
Q Consensus        82 ~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~------------------~~~i~~lgl~~f~~~  143 (285)
                      ...... +++. +|..|.+.|+.|..+..++..+|.|||+.|++.++                  ...|..+|+.+||+.
T Consensus        75 ~~~v~~-~p~~-~l~~yh~~w~~~~~ga~~~~~l~~yln~qfvk~~~~t~~d~~~~y~~~~~~~~~~eig~lal~~w~~~  152 (728)
T KOG2284|consen   75 QDIVDV-DPDL-LLQEYHKMWRVFHEGAIFIHRLFGYLNKQFVKQKRCTDLDNFAQYAAFLQIPDVKEIGCLALEIWKED  152 (728)
T ss_pred             hhhhcC-CHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhcccchhhhhhhcchhcCCcHHHHhHHHHHHHHHH
Confidence            544333 3344 99999999999999999999999999999998872                  346788899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCC-HHHHHHHHHHHHHH----------------------------------HHHH
Q 041127          144 VFEAMKDKVKDAVVALIDREREGEEID-RTLVKNVLDLFVEI----------------------------------EDMA  188 (285)
Q Consensus       144 v~~~i~~~l~~~il~~I~~~R~g~~i~-~~~l~~~i~~l~~L----------------------------------~~t~  188 (285)
                      ++.++...|+.-++..|.++|.|+..+ ...+.+++++|+.+                                  .+|.
T Consensus       153 ~v~~i~~~lv~~ll~~i~ndr~g~~p~i~~~v~gvinsfv~~e~tdfdvvpaegaryka~~~~~~fyqe~fe~p~lt~t~  232 (728)
T KOG2284|consen  153 LVKTILPQLVKLLLIAIDNDRKGNFPHIANEVSGVINSFVKMEETDFDVVPAEGARYKARESTTAFYQESFEKPLLTDTE  232 (728)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCccHHHHHHHHHHhhhhhhhcccccccccccchhhccccHHHHHHHhccccccchH
Confidence            999999999999999999999999877 57788999999887                                  7899


Q ss_pred             HHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------HHcchhhHHHHHhcCChhHHHH
Q 041127          189 AYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKLANILSF------MQKGEFRCRQLLRGHKLDGHSI  261 (285)
Q Consensus       189 ~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~~l~~------l~~~~~g~~~ll~~~~~~~L~~  261 (285)
                      +||+.+++..+.+.+ ++||++|..++++|+-||..||++|+..+++..|.+      +++++..|..+|.+++..||+.
T Consensus       233 ~yy~~~a~~~l~~~~cs~yme~vi~~l~~ee~r~~kylh~ss~~kvi~~cq~~mi~~h~~~lha~ch~~i~~e~~~d~~n  312 (728)
T KOG2284|consen  233 QYYSALAQKMLTDLSCSEYMEQVIVLLEQEEMRAKKYLHESSVEKVITLCQKVMIKAHKDKLHAVCHDLITNEENKDLRN  312 (728)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhhHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999999999999999 999999999999999999999999999999988877      6778899999999999999999


Q ss_pred             HHHhhcccccchh-hHHHHHHhhc
Q 041127          262 ICCYSKKSKNELA-FEETLEKVLK  284 (285)
Q Consensus       262 ly~L~~~~~~~~~-~~~~~~~~~~  284 (285)
                      ||.|++.+..|+. .+..+.++++
T Consensus       313 my~ll~~i~~gl~~mv~e~~~~v~  336 (728)
T KOG2284|consen  313 MYRLLKPIQAGLSVMVKEFEEYVK  336 (728)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHH
Confidence            9999999999976 3445555543

>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3)

Probab=100.00  E-value=1.6e-35  Score=287.55  Aligned_cols=243  Identities=33%  Similarity=0.610  Sum_probs=217.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhHhhcCCH
Q 041127           12 WDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDE   91 (285)
Q Consensus        12 W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~~~l~~~~~~   91 (285)
                      |+.|++||+.|+.       ..+++.+||++|+.||++|..+       +|+.||+++++.+.+|+..++ +.+...+++
T Consensus         1 W~~l~~~i~~i~~-------~~~~~~~~~~lY~~vy~l~~~~-------~~~~LY~~l~~~i~~~~~~~~-~~l~~~~~~   65 (588)
T PF00888_consen    1 WEILEEAIDQIFK-------KSISKLSYMELYTCVYNLCDNK-------YGEQLYDKLKEFISEYLKNII-ESLLSSSDE   65 (588)
T ss_dssp             HHHHHHHHHHHHT-------T-GCCSHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHHHHHHHH-HHHCTTTTC
T ss_pred             ChHHHHHHHHHHc-------CCCChhHHHHHHHHHHhhcCCc-------ccHHHHHHHHHHHHHHHHHHH-HHHHhcChh
Confidence            9999999999873       2467788999999999998854       999999999999999999864 455554555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCH
Q 041127           92 YDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDREREGEEIDR  171 (285)
Q Consensus        92 ~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~~~~i~~lgl~~f~~~v~~~i~~~l~~~il~~I~~~R~g~~i~~  171 (285)
                      . +|..|...|.+|+.++.+++++|+||||+|+.++           +|++.++.++.+.+.++++.+|.++|.|+.+++
T Consensus        66 ~-~l~~~~~~w~~~~~~~~~i~~if~yLdr~yv~~~-----------~f~~~v~~~~~~~i~~~ll~~I~~~R~g~~~~~  133 (588)
T PF00888_consen   66 D-LLEEYVQEWEKYKKAIKYISDIFSYLDRNYVKRN-----------LFREQVFKPLKDKIINALLNLIKNEREGEKIDR  133 (588)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHTHHHHHTSTTTT-----------HHHHHTTTSHHHHHHHHHHHHHHHHHTTTTSHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccH
Confidence            6 9999999999999999999999999999999887           999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCcchHHHHHH
Q 041127          172 TLVKNVLDLFVEI---------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKLAN  235 (285)
Q Consensus       172 ~~l~~~i~~l~~L---------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~  235 (285)
                      .+++.+++|++++               +.|.+||+.++   ++..+ .+|+.+|+.++++|.+|+..|++++|.+++.+
T Consensus       134 ~~l~~~~~~~~~l~~~~~y~~~fe~~~l~~t~~yY~~~~---i~~~~~~~Yl~~v~~~l~~E~~r~~~~l~~~t~~ki~~  210 (588)
T PF00888_consen  134 SLLKNVIEMFVELGSLEVYEEEFEKPFLEETKEYYKSES---IQENSVSEYLKKVENRLKEEEERVQKYLHPSTKEKIIK  210 (588)
T ss_dssp             HHHHHHHHHHHHTTHTHHHHHHTHHHHHHHHHHHHHHHH---HHHSHHHHHHHHHHHHHHHHHHHHHHCS-GGGHHHHHH
T ss_pred             HHHHHHHHHHhccchHHhhHHHHHHHHHHHHHHHHHHHH---HHhcCchhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Confidence            9999999999743               99999999999   77789 99999999999999999999999999999999


Q ss_pred             HHHH------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127          236 ILSF------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK  284 (285)
Q Consensus       236 ~l~~------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~  284 (285)
                      ++.+      +..+.+|+..|+++++.++|++||+|+++++++++ +.++++++++
T Consensus       211 ~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~ly~l~~~~~~~~~~l~~~~~~~i~  266 (588)
T PF00888_consen  211 TLEEVLISDHLDELSSGFRDLLEEDDKEDLKRLYRLFSRVPNGLESLRDAFKEYIK  266 (588)
T ss_dssp             HHHHHHTGGGHHHHHTCHHHHHHTT-HHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCchHHHHHHHHHH
Confidence            9988      33457899999999999999999999999977755 6677777653

Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-33  Score=261.69  Aligned_cols=275  Identities=20%  Similarity=0.335  Sum_probs=239.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCCCC--------CChHHHHHHHHHHHH
Q 041127            4 KASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPHHD--------EDPDQMYDKYQQILA   74 (285)
Q Consensus         4 ~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~~~--------~~~~~Ly~~l~~~l~   74 (285)
                      ...||++.|..++.||.+|+..|..    .+...+||++|+.+|+.|+ +.++-..+        ..++.+|+++....+
T Consensus        16 ~~~df~~~W~~i~~~I~~I~~~l~~----~m~~l~~~evY~~IYn~c~n~tr~~~~~~~~~~~~~~~~s~li~~L~~~~k   91 (773)
T COG5647          16 SEEDFESTWEFIERAIGQIFERLYD----SMAILSLMEVYTKIYNYCTNKTRSLESDLRWKIDFIYLGSRLIQKLVDYAK   91 (773)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHhcccccchhcccchhHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999999976653    3555679999999999999 53221111        368899999999999


Q ss_pred             HHhhhhhhhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc-----CCCcchHHHHHHHHHHHHHHHHH
Q 041127           75 DYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPR-----MALPELNAFGISCFRDLVFEAMK  149 (285)
Q Consensus        75 ~~~~~~~~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~-----~~~~~i~~lgl~~f~~~v~~~i~  149 (285)
                      +++...-..  ....+..+||..+++.|++|+.++.+++.+|.||||.|+++     .....+..+++..|+..+|.++.
T Consensus        92 ~~i~~~~~~--~s~~~~~~fl~~~v~~W~~~~~~~~~i~~~f~Ymdr~~~k~~~~~~~~~~E~~slcl~~~~~~~f~~i~  169 (773)
T COG5647          92 NYIEEYNRG--RSQENMEEFLDELVKFWNRFTKGATMINHLFLYMDRVYLKKARYDKTLVFEVYSLCLVKEKIESFRLIV  169 (773)
T ss_pred             HHHHHhccc--ccchhHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHhhh
Confidence            998875432  22222234999999999999999999999999999999992     23557888999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhhCC-hh
Q 041127          150 DKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEI-----------------------EDMAAYYSRKASNWILQDS-FD  205 (285)
Q Consensus       150 ~~l~~~il~~I~~~R~g~~i~~~~l~~~i~~l~~L-----------------------~~t~~yY~~~s~~~i~~~s-~~  205 (285)
                      +.+++.+|..+++.|.|+.+|+..+..++.|+..+                       +.|.+||..++++.+..++ .+
T Consensus       170 ~~lin~LL~~~~~~r~~~~id~~yi~~~~~~l~~l~~~s~~~k~~l~~y~s~Fep~fL~~t~~fY~~ess~~i~~~~~~e  249 (773)
T COG5647         170 DSLINPLLYYVERYRALQSIDRKYIEDAKDMLESLERPSDYKKENLSYYKSVFEPIFLEETWEFYEMESSEVIELLSVTE  249 (773)
T ss_pred             HHHHHHHHHHHHHHHhcCccCchHHHHHHHHHHhhcccchhccccchhhHHhhhHHHHHHhHHHHHHHHHHHHHHcCHHH
Confidence            99999999999999999999999999999998887                       9999999999999999999 99


Q ss_pred             HHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------H---HcchhhHHHHHhcCChhHHHHHHHhhcccccchhh-
Q 041127          206 YLVNVGECLKNERERASHYLQPSSNRKLANILSF------M---QKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELAF-  275 (285)
Q Consensus       206 Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~~l~~------l---~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~~-  275 (285)
                      ||++|..++++|..++..|++.++..++.+++++      +   ...++||..|++..+.+.|+.||+++++.+.|++. 
T Consensus       250 yL~ka~~~~~~E~~~v~~yl~~~~~kpl~~~~edvLi~~hld~l~~~~s~f~~~~d~~~~e~l~~lY~l~se~~~~v~pl  329 (773)
T COG5647         250 YLEKAHKILEREEELVEIYLKVSTKKPLLEVLEDVLITRHLDDLEEQGSGFREALDASNLEKLQVLYRLLSETKYGVQPL  329 (773)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhhhhccHHHHHhchHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhH
Confidence            9999999999999999999999999999999887      3   33346999999999999999999999999999887 


Q ss_pred             HHHHHHhhc
Q 041127          276 EETLEKVLK  284 (285)
Q Consensus       276 ~~~~~~~~~  284 (285)
                      .+.+++|++
T Consensus       330 ~~~f~~yV~  338 (773)
T COG5647         330 QEVFERYVK  338 (773)
T ss_pred             HHHHHHHHH
Confidence            888999886

>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.4e-29  Score=221.68  Aligned_cols=258  Identities=18%  Similarity=0.334  Sum_probs=227.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 041127            4 KASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPHHDEDPDQMYDKYQQILADYMPSKVL   82 (285)
Q Consensus         4 ~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~   82 (285)
                      ....|++.|+..++.+-++++      +..++...|+.||..||.+|. ...+|      ..+|+.++..|.+++... +
T Consensus         9 ~r~qFee~W~~~rpIVlkLLr------Q~sVt~~~WqDLF~~Vh~vclWddkGp------aKI~d~L~~dI~efi~qA-q   75 (777)
T KOG2285|consen    9 DRDQFEEEWSKARPIVLKLLR------QKSVTPAAWQDLFYHVHKVCLWDDKGP------AKIRDILTRDINEFIHQA-Q   75 (777)
T ss_pred             chhhhhhhccccchHHHHHHh------hccCCHHHHHHHHhhheeeeeecCCCc------HHHHHHHHHHHHHHHHHH-H
Confidence            345899999999999999876      347899999999999999999 54223      789999999999999875 3


Q ss_pred             hhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC--------CCcchHHHHHHHHHHHHHHHHHHHHHH
Q 041127           83 PYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM--------ALPELNAFGISCFRDLVFEAMKDKVKD  154 (285)
Q Consensus        83 ~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~--------~~~~i~~lgl~~f~~~v~~~i~~~l~~  154 (285)
                      ....+..++..+|..|..+|.+|.....++.-.|.-|+..-..+.        .-.+|..+.+.-|.+.+|..|++++..
T Consensus        76 ~rv~s~q~d~aLL~~YIvEWrkFftQ~niLPlPF~qle~s~~gk~gs~kk~~~eds~vRklMLd~WNe~IF~nIk~rLq~  155 (777)
T KOG2285|consen   76 KRVRSLQTDGALLIGYIVEWRKFFTQANILPLPFKQLEESQAGKRGSVKKTPTEDSSVRKLMLDKWNEIIFMNIKERLQV  155 (777)
T ss_pred             HHHHhhccccHHHHHHHHHHHHHHHhcCcCCCcHHHHHHHhhcccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355554455459999999999999999999999999998754443        134789999999999999999999999


Q ss_pred             HHHHHHHHHhcCCcCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Q 041127          155 AVVALIDREREGEEIDRTLVKNVLDLFVEI--------------------EDMAAYYSRKASNWILQDS-FDYLVNVGEC  213 (285)
Q Consensus       155 ~il~~I~~~R~g~~i~~~~l~~~i~~l~~L--------------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~  213 (285)
                      +.+.+++.+|.|+++|.+++-++-.+++.|                    ++|.+||+..+..++++++ -+||++|+..
T Consensus       156 sAmklVhaER~G~a~DaQlViGvRESyVnL~snaEDkL~iYR~nFE~ayl~~T~efYr~~~~~~lqenGVl~YMkYAD~K  235 (777)
T KOG2285|consen  156 SAMKLVHAERDGNAIDAQLVIGVRESYVNLNSNAEDKLLIYRQNFERAYLEQTTEFYRKICGNLLQENGVLEYMKYADKK  235 (777)
T ss_pred             HHHHHHHHHhccchhhhhhhhhhHHhHhhhccCccccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHhh
Confidence            999999999999999999999999999998                    9999999999999999999 9999999999


Q ss_pred             HHHHHHHhcccCCc--chHHHHHHHHHH------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh
Q 041127          214 LKNERERASHYLQP--SSNRKLANILSF------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA  274 (285)
Q Consensus       214 l~eE~~r~~~yl~~--~t~~~l~~~l~~------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~  274 (285)
                      +++|+.|+..||.+  .|..++++++..      .+.+-..|..||...+++.|++||+|+.|+..|.+
T Consensus       236 L~EEe~RAkRYLE~~~~s~~~lme~~VnaLv~sf~~tIlAEC~~lI~~~etErL~lmfrLmdrv~~Gie  304 (777)
T KOG2285|consen  236 LEEEEQRAKRYLEMNSPSSGKLMEKAVNALVESFEDTILAECSKLIASKETERLQLMFRLMDRVRSGIE  304 (777)
T ss_pred             hhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcch
Confidence            99999999999876  677888888776      34556789999999999999999999999999865

>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=5.9e-26  Score=208.76  Aligned_cols=220  Identities=18%  Similarity=0.317  Sum_probs=196.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHhh-cCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC--CCcchHHHHHHHH
Q 041127           64 QMYDKYQQILADYMPSKVLPYLRE-KHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM--ALPELNAFGISCF  140 (285)
Q Consensus        64 ~Ly~~l~~~l~~~~~~~~~~~l~~-~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~--~~~~i~~lgl~~f  140 (285)
                      .||+.|++.+++|++..+. .+.. ..+...+|+++.++|..|+..+..+++||.||||.|+...  ..+|+|++|+.+|
T Consensus         1 ~ly~~l~~~~~~~~~~~~~-q~~~~~~d~~~~l~k~~~~w~~~~~~~~mIRsIfl~lDrt~~~qsnp~v~siWem~l~LF   79 (661)
T KOG2167|consen    1 VLYKQLRQICEQHIKAQIE-QLRGDELDSVLFLEKIGRCWQPDPKQMIMIRSIFLHLDRTYVLQSNPYVLSIWEMGLQLF   79 (661)
T ss_pred             ChHHHHHHHHHHHHHHHHh-hCcCCcchHHHHHHHHhhHhhhhHHhhhhhhheeeecCCcccccCCCCcCCHHHhhHHHH
Confidence            3899999999999996654 3333 2232339999999999999999999999999999999873  4789999999999


Q ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhCC-
Q 041127          141 RDLVFE----AMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEI------------EDMAAYYSRKASNWILQDS-  203 (285)
Q Consensus       141 ~~~v~~----~i~~~l~~~il~~I~~~R~g~~i~~~~l~~~i~~l~~L------------~~t~~yY~~~s~~~i~~~s-  203 (285)
                      |.+++.    .+..++.++++..++++|.|+++|+++|++++.|+.++            +.+.++|.+++.+..++.. 
T Consensus        80 R~~f~~~~~~~vqs~~~N~ll~s~er~rsgeAvdrslLrsll~MLsd~~iY~esF~~~fls~f~~lY~aE~~d~~Qel~v  159 (661)
T KOG2167|consen   80 RAHFSQEPQPFVQSKTFNGLLKSIERERSGEAVDRSLLRSLLKMLSDLQIYKESFELTFLSLFRELYAAEGQDKRQELEV  159 (661)
T ss_pred             HHHhhccCCchhhccchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcchhhhccc
Confidence            999997    67888999999999999999999999999999999988            8999999999999999999 


Q ss_pred             hhHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------HH-cchhhHHHHHhcCChhHHHHHHHhhcccc-cchhh
Q 041127          204 FDYLVNVGECLKNERERASHYLQPSSNRKLANILSF------MQ-KGEFRCRQLLRGHKLDGHSIICCYSKKSK-NELAF  275 (285)
Q Consensus       204 ~~Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~~l~~------l~-~~~~g~~~ll~~~~~~~L~~ly~L~~~~~-~~~~~  275 (285)
                      ++||++++.++.+|..|+..|++.+|+.++..++++      |. +...|+..+++.++..++.+||.|++++. +.+..
T Consensus       160 ~eYl~h~e~~l~~E~~~~i~~~D~st~k~l~atV~~~LL~~hL~~IL~kgl~~lvDm~q~~d~~rly~L~~r~~~g~l~l  239 (661)
T KOG2167|consen  160 PEYLEHVEGRLEEENDRVIEYFDSSTKKPLIATVERCLLSRHLDLILTKGLDSLVDMRQTSDLTRLYMLFSRVQGGQLSL  239 (661)
T ss_pred             HHHHHhhhhcccchHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcchHHhhhhhhccchHhHHHHHHHHhcchHHH
Confidence            999999999999999999999999996667777776      33 35689999999999999999999999998 55779


Q ss_pred             HHHHHHhhc
Q 041127          276 EETLEKVLK  284 (285)
Q Consensus       276 ~~~~~~~~~  284 (285)
                      +..|++++|
T Consensus       240 ~qq~sdylk  248 (661)
T KOG2167|consen  240 LQQWSDYLK  248 (661)
T ss_pred             HHHHHHHHh
Confidence            999999987

>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity []

Probab=97.91  E-value=0.00037  Score=56.19  Aligned_cols=133  Identities=22%  Similarity=0.333  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhH---hhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhh
Q 041127            6 SDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYD---ICCKPARPHHDEDPDQMYDKYQQILADYMPSKVL   82 (285)
Q Consensus         6 ~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~---lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~   82 (285)
                      ...++.|+.+..++-.+|+   |... ..+   -+.+-..|-.   .|...    .  ....+-+.+++.+..-+... .
T Consensus         3 ~~~~~~W~~~~~~vl~lF~---g~~l-~~~---iEdlN~lv~~~i~~~~~~----~--~~~~~~~dl~elL~tg~~~L-~   68 (158)
T PF08539_consen    3 MSSDDAWNSLCAKVLPLFQ---GERL-RLP---IEDLNELVRFHIKLCIQS----F--PPSYFLEDLEELLTTGMYIL-E   68 (158)
T ss_pred             CchhhhHHHHHHHHHHHHc---CCCC-CcC---HHHHHHHHHHHHHHhhcc----c--chHHHHHHHHHHHHHHHHHH-H
Confidence            4578999999999999775   4322 233   5666666644   44421    0  33566677777777766654 4


Q ss_pred             hhHhhcCCHHHHHHHHHHHHHHH-HHHHHHHhhcccccccccccc-----------------CCCcchHHHHHHHHHHHH
Q 041127           83 PYLREKHDEYDLLRELLKSWANH-KFLAKWLSRVFLPLQAGYIPR-----------------MALPELNAFGISCFRDLV  144 (285)
Q Consensus        83 ~~l~~~~~~~~~L~~~~~~W~~~-~~~~~~l~~if~YLdr~y~~~-----------------~~~~~i~~lgl~~f~~~v  144 (285)
                      ..+...+++. +|..+...|.-| +.-+-++..+|..|++.+-..                 ....+|..+++..||+.|
T Consensus        69 ~~l~~~~~~~-~l~rL~eiW~~Ff~~VlP~lqavFlPLq~~f~~~~~~~~~~~~~~~~~~~~~~~l~Vr~l~L~~FRD~I  147 (158)
T PF08539_consen   69 NQLNEVPDNR-LLKRLVEIWQFFFTQVLPYLQAVFLPLQLEFQGNGKYMNPSEAREFWGNKAGSELDVRRLLLIAFRDSI  147 (158)
T ss_pred             HHHhhcchhH-HHHHHHHHHHHHhcchHHHHHHHHhhhHHhhcccCccCChhhhhccccccCCCCCcHHHHHHHHHHHHh
Confidence            4565556666 999999999974 777789999999999543221                 234789999999999999


Q ss_pred             HHHHHHHHH
Q 041127          145 FEAMKDKVK  153 (285)
Q Consensus       145 ~~~i~~~l~  153 (285)
                      +-|..+++.
T Consensus       148 vLP~y~~l~  156 (158)
T PF08539_consen  148 VLPYYQRLK  156 (158)
T ss_pred             hhcchHhhh
Confidence            987776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	285
4a0k_A	742	Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp		1e-05
2hye_C	759	Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl		1e-05
1ldk_A	396	Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu		9e-05
1ldj_A	760	Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu		1e-04
1u6g_A	776	Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le		1e-04
4a64_A	354	Crystal Structure Of The N-Terminal Domain Of Human		4e-04
4a0l_E	726	Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp		7e-04
4a0c_C	741	Structure Of The Cand1-Cul4b-Rbx1 Complex Length =		7e-04

>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 31/270 (11%)
Query: 13  DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
           +Y +  + KL      +Q      +NLE+   LY  V ++C     P        +Y + 
Sbjct: 40  NYTQDTWRKLHEAVRAVQSSTSIRYNLEE---LYQAVENLCSHKVSP-------MLYKQL 89
Query: 70  QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYI-PRMA 128
           +Q   D++ +++LP+  +  D    L+++   W +H      +  +FL L   Y+     
Sbjct: 90  RQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNST 149
Query: 129 LPELNAFGISCFRDLVF--EAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVE--- 183
           LP +   G+  FR  +   + ++ K  D ++ L            +L++++L +  +   
Sbjct: 150 LPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQV 209
Query: 184 ---------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
                    +E+    Y+ +    + +    +YL +V + L+ E +R   YL  S+ + L
Sbjct: 210 YKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPL 269
Query: 234 ANILSFMQKGEFRCRQLLRG--HKLDGHSI 261
              +     GE     L +G  H LD + +
Sbjct: 270 IACVEKQLLGEHLTAILQKGLDHLLDENRV 299

>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 111/270 (41%), Gaps = 31/270 (11%)
Query: 13  DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
           +Y +  + KL      +Q      +NLE+   LY  V ++C     P        +Y + 
Sbjct: 57  NYTQDTWRKLHEAVRAVQSSTSIRYNLEE---LYQAVENLCSHKVSP-------MLYKQL 106
Query: 70  QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYI-PRMA 128
           +Q   D++ +++LP+  +  D    L+++   W +H      +  +FL L   Y+     
Sbjct: 107 RQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNST 166
Query: 129 LPELNAFGISCFRDLVF--EAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVE--- 183
           LP +   G+  FR  +   + ++ K  D ++ L            +L++++L +  +   
Sbjct: 167 LPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQV 226
Query: 184 ---------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKL 233
                    +E+    Y+ +    + +    +YL +V + L+ E +R   YL  S+ + L
Sbjct: 227 YKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPL 286
Query: 234 ANILSFMQKGEFRCRQLLRG--HKLDGHSI 261
              +     GE     L +G  H LD + +
Sbjct: 287 IACVEKQLLGEHLTAILQKGLDHLLDENRV 316

>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 100/251 (39%), Gaps = 59/251 (23%)
Query: 39  YMMLYTIVYDICCK-------------PARPHHDEDPD-------QMYDKYQQILADYMP 78
           YM LYT VY+ C               P++    + P        ++Y + ++ L +Y+ 
Sbjct: 28  YMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLT 87
Query: 79  SKVLPYLREKHDEYD--LLRELLKSWANHKFLAKWLSRVFLPLQAGYI------PRMALP 130
           +     L++  D  D  +L+   + W +++F +K L+ +   L   ++       R  + 
Sbjct: 88  N----LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 143
Query: 131 ELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVE------- 183
           E+ +  +  +RD +F  +  +V +AV+ L             L+  V+  +VE       
Sbjct: 144 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 203
Query: 184 -------------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
                              + D   +Y+R+++ ++ Q+   +Y+      L  E+ R   
Sbjct: 204 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 263
Query: 224 YLQPSSNRKLA 234
           YL  S+  +LA
Sbjct: 264 YLHESTQDELA 274

>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 100/251 (39%), Gaps = 59/251 (23%)
Query: 39  YMMLYTIVYDICCK-------------PARPHHDEDPD-------QMYDKYQQILADYMP 78
           YM LYT VY+ C               P++    + P        ++Y + ++ L +Y+ 
Sbjct: 26  YMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLT 85
Query: 79  SKVLPYLREKHDEYD--LLRELLKSWANHKFLAKWLSRVFLPLQAGYI------PRMALP 130
           +     L++  D  D  +L+   + W +++F +K L+ +   L   ++       R  + 
Sbjct: 86  N----LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 141
Query: 131 ELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVE------- 183
           E+ +  +  +RD +F  +  +V +AV+ L             L+  V+  +VE       
Sbjct: 142 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 201
Query: 184 -------------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
                              + D   +Y+R+++ ++ Q+   +Y+      L  E+ R   
Sbjct: 202 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 261
Query: 224 YLQPSSNRKLA 234
           YL  S+  +LA
Sbjct: 262 YLHESTQDELA 272

>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 100/251 (39%), Gaps = 59/251 (23%)
Query: 39  YMMLYTIVYDICCK-------------PARPHHDEDPD-------QMYDKYQQILADYMP 78
           YM LYT VY+ C               P++    + P        ++Y + ++ L +Y+ 
Sbjct: 42  YMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLT 101
Query: 79  SKVLPYLREKHDEYD--LLRELLKSWANHKFLAKWLSRVFLPLQAGYI------PRMALP 130
           +     L++  D  D  +L+   + W +++F +K L+ +   L   ++       R  + 
Sbjct: 102 N----LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIY 157
Query: 131 ELNAFGISCFRDLVFEAMKDKVKDAVVALXXXXXXXXXXXXTLVKNVLDLFVE------- 183
           E+ +  +  +RD +F  +  +V +AV+ L             L+  V+  +VE       
Sbjct: 158 EIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDD 217
Query: 184 -------------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASH 223
                              + D   +Y+R+++ ++ Q+   +Y+      L  E+ R   
Sbjct: 218 AFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQV 277
Query: 224 YLQPSSNRKLA 234
           YL  S+  +LA
Sbjct: 278 YLHESTQDELA 288

>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 13  DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
           +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct: 8   NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 57
Query: 70  QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
           +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct: 58  RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 117
Query: 129 LPELNAFGISCFRDLVF--EAMKDKVKDAVVAL 159
           LP +   G+  FR  +   + +++K  D ++ L
Sbjct: 118 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLL 150

>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 13  DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
           +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct: 24  NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 73
Query: 70  QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
           +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct: 74  RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 133
Query: 129 LPELNAFGISCFRDLVF--EAMKDKVKDAVVAL 159
           LP +   G+  FR  +   + +++K  D ++ L
Sbjct: 134 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLL 166

>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 13  DYLERGFTKLKRIFEGLQERA---FNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKY 69
           +Y +  + KLK   E +Q      +NLE+   LY  V ++C      +       +Y + 
Sbjct: 39  NYTDETWQKLKEAVEAIQNSTSIKYNLEE---LYQAVENLCSYKISAN-------LYKQL 88
Query: 70  QQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA- 128
           +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L   Y+ + + 
Sbjct: 89  RQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSM 148
Query: 129 LPELNAFGISCFRDLVF--EAMKDKVKDAVVAL 159
           LP +   G+  FR  +   + +++K  D ++ L
Sbjct: 149 LPSIWDMGLELFRAHIISDQKVQNKTIDGILLL 181

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	285
2hye_C	759	Cullin-4A, CUL-4A; beta propeller, ring finger, zi	4e-38
1ldj_A	760	Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc	2e-37
2wzk_A	391	Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho	7e-35
4a64_A	354	Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo	7e-34
4eoz_B	364	Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro	2e-33
4ap2_B	410	Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c	5e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759

 Score =  141 bits (356), Expect = 4e-38
 Identities = 54/295 (18%), Positives = 122/295 (41%), Gaps = 37/295 (12%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           +   + +++ W  L      ++ +      R     +   LY  V ++C         + 
Sbjct: 53  RLPDNYTQDTWRKLHEA---VRAVQSSTSIRY----NLEELYQAVENLCSH-------KV 98

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
              +Y + +Q   D++ +++LP+  +  D    L+++   W +H      +  +FL L  
Sbjct: 99  SPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDR 158

Query: 122 GYIPRMA-LPELNAFGISCFRDLVFEA--MKDKVKDAVVALIDREREGEEIDRTLVKNVL 178
            Y+ + + LP +   G+  FR  +     ++ K  D ++ LI+RER GE +DR+L++++L
Sbjct: 159 TYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLL 218

Query: 179 DLFVE------------IEDMAAYYSRKASNWILQDSF-DYLVNVGECLKNERERASHYL 225
            +  +            +E+    Y+ +    + +    +YL +V + L+ E +R   YL
Sbjct: 219 GMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYL 278

Query: 226 QPSSNRKLANILSFMQKGEF-------RCRQLLRGHKLDGHSIICCYSKKSKNEL 273
             S+ + L   +     GE            LL  +++   + +     + +   
Sbjct: 279 DHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQ 333

>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760

 Score =  139 bits (351), Expect = 2e-37
 Identities = 60/317 (18%), Positives = 124/317 (39%), Gaps = 69/317 (21%)

Query: 9   EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDIC------------------ 50
           ++ WD L  G  ++         ++     YM LYT VY+ C                  
Sbjct: 2   DQIWDDLRAGIQQV------YTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSK 55

Query: 51  --CKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFL 108
                          ++Y + ++ L +Y+ + +L    +  DE  +L+   + W +++F 
Sbjct: 56  SKKGQTPGGAQFVGLELYKRLKEFLKNYL-TNLLKDGEDLMDE-SVLKFYTQQWEDYRFS 113

Query: 109 AKWLSRVFLPLQAGYIPR------MALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDR 162
           +K L+ +   L   ++ R        + E+ +  +  +RD +F  +  +V +AV+ LI++
Sbjct: 114 SKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEK 173

Query: 163 EREGEEIDRTLVKNVLDLFVE--------------------------IEDMAAYYSRKAS 196
           ER GE I+  L+  V+  +VE                          + D   +Y+R+++
Sbjct: 174 ERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233

Query: 197 NWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKLANIL------SFMQKGEFRCRQ 249
            ++ Q+   +Y+      L  E+ R   YL  S+  +LA           ++      + 
Sbjct: 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQN 293

Query: 250 LLRGHKLDGHSIICCYS 266
           LL   K +   +   Y+
Sbjct: 294 LLDADKNE--DLGRMYN 308

>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391

 Score =  128 bits (323), Expect = 7e-35
 Identities = 47/311 (15%), Positives = 117/311 (37%), Gaps = 51/311 (16%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
            + +   E+ WD++     KL      L++ +   + +  L++ V+ +C    +      
Sbjct: 9   NKGSLQFEDKWDFMHPIVLKL------LRQESVTKQQWFDLFSDVHAVCLWDDKGSS--- 59

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
             +++   ++ + +++       L  + D   LL+  +  W         L + F  L+ 
Sbjct: 60  --KIHQALKEDILEFIKQAQARVLSHQDD-TALLKAYIVEWRKFFTQCDILPKPFCQLEV 116

Query: 122 GYIPRMALPELNAFGIS--------CFRDLVFEAMKDKVKDAVVALIDREREGEEIDRTL 173
             + + +  + +    S         + + +F  +K++++D+ + L+  ER GE  D  L
Sbjct: 117 TLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQL 176

Query: 174 VKNVLDLFVE--------------------IEDMAAYYSRKASNWILQDSF-DYLVNVGE 212
           V  V + +V                     ++    +Y  +A +++ Q+   +Y+     
Sbjct: 177 VIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADA 236

Query: 213 CLKNERERASHYLQPSSNRKLANILS----------FMQKGEFRCRQLLRGHKLDGHSII 262
            LK E +RA  YL+          L           F +     C+ +++ ++ +   ++
Sbjct: 237 KLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLM 296

Query: 263 CCYSKKSKNEL 273
                K  N +
Sbjct: 297 FSLMDKVPNGI 307

>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354

 Score =  125 bits (314), Expect = 7e-34
 Identities = 52/252 (20%), Positives = 113/252 (44%), Gaps = 30/252 (11%)

Query: 2   KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDED 61
           K   + ++E W  L+     ++ I      +     +   LY  V ++C           
Sbjct: 4   KLPENYTDETWQKLKEA---VEAIQNSTSIKY----NLEELYQAVENLCSYK-------I 49

Query: 62  PDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQA 121
              +Y + +QI  D++ +++  +  +  D    L+++ + W NH      +  +FL L  
Sbjct: 50  SANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDR 109

Query: 122 GYIPRMA-LPELNAFGISCFRDLV--FEAMKDKVKDAVVALIDREREGEEIDRTLVKNVL 178
            Y+ + + LP +   G+  FR  +   + +++K  D ++ LI+RER GE IDR+L++++L
Sbjct: 110 TYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLL 169

Query: 179 DLFVE------------IEDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYL 225
            +  +            +E+    Y+ +    + +    +YL +V + L+ E +R   YL
Sbjct: 170 SMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYL 229

Query: 226 QPSSNRKLANIL 237
             ++ + L   +
Sbjct: 230 DQTTQKSLIATV 241

>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364

 Score =  124 bits (312), Expect = 2e-33
 Identities = 45/303 (14%), Positives = 116/303 (38%), Gaps = 45/303 (14%)

Query: 1   MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDE 60
           M          WD L+     ++ I             +  LY   Y +           
Sbjct: 6   MTMDEKYVNSIWDLLKNA---IQEIQRKNNSGL----SFEELYRNAYTMVLHK------- 51

Query: 61  DPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQ 120
             +++Y   ++++ +++ +KV   +    +  + L+ L ++W +H+     +  + + + 
Sbjct: 52  HGEKLYTGLREVVTEHLINKVREDVLNSLNN-NFLQTLNQAWNDHQTAMVMIRDILMYMD 110

Query: 121 AGYIPRMALPELNAFGISCFRD--LVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVL 178
             Y+ +  +  +   G+  FRD  + +  ++D ++  ++ +I RER+GE +DR  ++N  
Sbjct: 111 RVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNAC 170

Query: 179 DLFVE-----------------IEDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERER 220
            + +                  +E  A ++  ++  ++ ++S   Y+  V   +  E ER
Sbjct: 171 QMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIER 230

Query: 221 ASHYLQPSSNRKLANIL----------SFMQKGEFRCRQLLRGHKLDGHSIICCYSKKSK 270
             H L  S+   +  ++          + ++        +L+  K +    +     +  
Sbjct: 231 VMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVP 290

Query: 271 NEL 273
           N L
Sbjct: 291 NGL 293

>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410

 Score =  121 bits (304), Expect = 5e-32
 Identities = 41/257 (15%), Positives = 103/257 (40%), Gaps = 35/257 (13%)

Query: 1   MKRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDE 60
           M          WD L+    +   I             +  LY   Y +           
Sbjct: 23  MTMDEKYVNSIWDLLKNAIQE---IQRKNNSGL----SFEELYRNAYTMVLHK------- 68

Query: 61  DPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQ 120
             +++Y   ++++ +++ +KV   +    +  + L+ L ++W +H+     +  + + + 
Sbjct: 69  HGEKLYTGLREVVTEHLINKVREDVLNSLNN-NFLQTLNQAWNDHQTAMVMIRDILMYMD 127

Query: 121 AGYIPRMALPELNAFGISCFRD--LVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVL 178
             Y+ +  +  +   G+  FRD  + +  ++D ++  ++ +I RER+GE +DR  ++N  
Sbjct: 128 RVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNAC 187

Query: 179 DLFVE-----------------IEDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERER 220
            + +                  +E  A ++  ++  ++ ++S   Y+  V   +  E ER
Sbjct: 188 QMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIER 247

Query: 221 ASHYLQPSSNRKLANIL 237
             H L  S+   +  ++
Sbjct: 248 VMHCLDKSTEEPIVKVV 264

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 54/216 (25%)

Query: 50  CCKPARPHHDEDPDQMYDKYQQILADY--MPSKVLPYLREKHDEYDLLRELLKSWANHKF 107
           C  P     +   + +     QI  ++              H     LR LLKS   ++ 
Sbjct: 192 CNSP-----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYE- 244

Query: 108 LAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFEAMKDK-VKDAVVALIDREREG 166
                    L L      +      NAF +SC + L+    + K V D + A        
Sbjct: 245 ------NCLLVLLNVQNAKA----WNAFNLSC-KILL--TTRFKQVTDFLSAATTTHISL 291

Query: 167 EEIDRTLVK-NVLDLFVEIEDMAAYYSRKASNWILQDSFD----------YLVN-VGECL 214
           +    TL    V  L                 ++     D            ++ + E +
Sbjct: 292 DHHSMTLTPDEVKSLL--------------LKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 215 KNERERASHYLQPSSNRKLANI----LSFMQKGEFR 246
           ++      ++   + + KL  I    L+ ++  E+R
Sbjct: 338 RDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYR 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	285
4eoz_B	364	Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro	100.0
4a64_A	354	Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo	100.0
4ap2_B	410	Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c	100.0
2wzk_A	391	Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho	100.0
1ldj_A	760	Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc	100.0
2hye_C	759	Cullin-4A, CUL-4A; beta propeller, ring finger, zi	100.0

>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B

Probab=100.00  E-value=3.1e-55  Score=400.47  Aligned_cols=268  Identities=18%  Similarity=0.378  Sum_probs=243.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 041127            2 KRKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKV   81 (285)
Q Consensus         2 ~~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~   81 (285)
                      .....+|+++|+.|++||++|++   +. +.+.   +||++|+.||++|+..       .|+.||+++++.+.+|+...+
T Consensus         7 ~~~~~~~~~~W~~L~~ai~~I~~---~~-~~~~---s~e~LY~~vy~lc~~k-------~g~~LY~~l~~~~~~~l~~~v   72 (364)
T 4eoz_B            7 TMDEKYVNSIWDLLKNAIQEIQR---KN-NSGL---SFEELYRNAYTMVLHK-------HGEKLYTGLREVVTEHLINKV   72 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHT---TC-GGGC---CHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHTH
T ss_pred             CCChhhHHHHHHHHHHHHHHHHh---cC-CCCC---CHHHHHHHHHHHHhhh-------CHHHHHHHHHHHHHHHHHHHH
Confidence            34456899999999999999875   22 2234   4999999999999943       899999999999999999555


Q ss_pred             hhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 041127           82 LPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFE--AMKDKVKDAVVAL  159 (285)
Q Consensus        82 ~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~~~~i~~lgl~~f~~~v~~--~i~~~l~~~il~~  159 (285)
                      .+.+....++. ||+.+.++|++|+.++.+|+++|+||||+|+++++.++|+++|+.+||++||.  +++++++++++.+
T Consensus        73 ~~~~~~~~~~~-~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~l  151 (364)
T 4eoz_B           73 REDVLNSLNNN-FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDM  151 (364)
T ss_dssp             HHHHHTTTTSS-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            66776666666 99999999999999999999999999999999999999999999999999997  8999999999999


Q ss_pred             HHHHhcCCcCCHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHh
Q 041127          160 IDREREGEEIDRTLVKNVLDLFVEI-----------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERA  221 (285)
Q Consensus       160 I~~~R~g~~i~~~~l~~~i~~l~~L-----------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~  221 (285)
                      |+++|+|+.||+++|+++++||++|                 ++|.+||+++|++|+++++ ++||++|+.+|++|.+||
T Consensus       152 I~~eR~Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~  231 (364)
T 4eoz_B          152 IARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERV  231 (364)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887                 9999999999999999999 999999999999999999


Q ss_pred             cccCCcchHHHHHHHHHH----------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127          222 SHYLQPSSNRKLANILSF----------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK  284 (285)
Q Consensus       222 ~~yl~~~t~~~l~~~l~~----------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~  284 (285)
                      ..||+++|.++|.+++++          +.+.++||..||++++.++|++||+|++|+++|++ +.++++++|+
T Consensus       232 ~~yL~~~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~  305 (364)
T 4eoz_B          232 MHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLR  305 (364)
T ss_dssp             HHHSCGGGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred             HHcCCcccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            999999999999999998          23345899999999999999999999999999974 8888888874

>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}

Probab=100.00  E-value=2.1e-54  Score=393.69  Aligned_cols=267  Identities=20%  Similarity=0.419  Sum_probs=240.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhhh
Q 041127            4 KASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLP   83 (285)
Q Consensus         4 ~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~~   83 (285)
                      ...+|+++|+.|++||++|++   +. +.+.   +||++|+.||++|+..       +|++||+++++.+.+|+...+.+
T Consensus         6 ~~~~~~~~W~~L~~ai~~I~~---~~-~~~~---s~eeLY~~vy~lc~~~-------~g~~LY~~l~~~~~~~l~~~~~~   71 (354)
T 4a64_A            6 PENYTDETWQKLKEAVEAIQN---ST-SIKY---NLEELYQAVENLCSYK-------ISANLYKQLRQICEDHIKAQIHQ   71 (354)
T ss_dssp             CSSSTTHHHHHHHHHHHHHHT---TC-CCCS---CHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHTTGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHh---CC-CCCC---CHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHHHHHH
Confidence            346899999999999999875   22 2233   5999999999999942       89999999999999999987664


Q ss_pred             hHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC-CcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 041127           84 YLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA-LPELNAFGISCFRDLVFE--AMKDKVKDAVVALI  160 (285)
Q Consensus        84 ~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~-~~~i~~lgl~~f~~~v~~--~i~~~l~~~il~~I  160 (285)
                      ......++.+||+.+.++|++|+.++.+|+++|+||||+|+++++ .++|+++|+.+||++||.  +++++++++++.+|
T Consensus        72 ~~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI  151 (354)
T 4a64_A           72 FREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLI  151 (354)
T ss_dssp             GGCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            433333333499999999999999999999999999999999886 799999999999999997  79999999999999


Q ss_pred             HHHhcCCcCCHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCc
Q 041127          161 DREREGEEIDRTLVKNVLDLFVEI------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQP  227 (285)
Q Consensus       161 ~~~R~g~~i~~~~l~~~i~~l~~L------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~  227 (285)
                      +++|+|+.||+++|+++++||.+|            ++|++||+++|++|+++++ ++||++|+.+|++|.+||..||++
T Consensus       152 ~~eR~Ge~id~~lik~~i~ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~  231 (354)
T 4a64_A          152 ERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQ  231 (354)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCG
T ss_pred             HHHhCCCCCCHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            999999999999999999999988            9999999999999999999 999999999999999999999999


Q ss_pred             chHHHHHHHHHH------HH-cchhhHHHHHhcCChhHHHHHHHhhcccccch-hhHHHHHHhhc
Q 041127          228 SSNRKLANILSF------MQ-KGEFRCRQLLRGHKLDGHSIICCYSKKSKNEL-AFEETLEKVLK  284 (285)
Q Consensus       228 ~t~~~l~~~l~~------l~-~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~-~~~~~~~~~~~  284 (285)
                      +|.++|.+++++      +. .+++||..||++++.++|++||+|++|+++|+ .+.++++++|+
T Consensus       232 ~T~~~l~~~~e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~  296 (354)
T 4a64_A          232 TTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIK  296 (354)
T ss_dssp             GGHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence            999999999998      22 24689999999999999999999999999998 58888998874

>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.2e-54  Score=399.94  Aligned_cols=265  Identities=18%  Similarity=0.377  Sum_probs=241.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 041127            5 ASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPY   84 (285)
Q Consensus         5 ~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~~~   84 (285)
                      ..+|+++|+.|++||++|+.   +. ..+   .+||+||+.||++|+..       .|++||+++++.+.+|+...+.+.
T Consensus        27 ~~~~~~~W~~L~~ai~~I~~---~~-~~~---~s~eeLY~~vy~lc~~k-------~g~~LY~~l~~~~~~~l~~~v~~~   92 (410)
T 4ap2_B           27 EKYVNSIWDLLKNAIQEIQR---KN-NSG---LSFEELYRNAYTMVLHK-------HGEKLYTGLREVVTEHLINKVRED   92 (410)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT---TC-CTT---CCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHh---cC-CCC---CCHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34799999999999999875   22 223   45999999999999943       899999999999999999555667


Q ss_pred             HhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 041127           85 LREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMALPELNAFGISCFRDLVFE--AMKDKVKDAVVALIDR  162 (285)
Q Consensus        85 l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~~~~i~~lgl~~f~~~v~~--~i~~~l~~~il~~I~~  162 (285)
                      +....++. ||+.+.++|++|+.++.+|+++|+||||+|+++++.++|+++|+.+||++||.  +++++++++++.+|++
T Consensus        93 l~~~~~~~-~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~  171 (410)
T 4ap2_B           93 VLNSLNNN-FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIAR  171 (410)
T ss_dssp             HHTTTTSS-HHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHH-HHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            76666666 99999999999999999999999999999999999999999999999999997  8999999999999999


Q ss_pred             HhcCCcCCHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhccc
Q 041127          163 EREGEEIDRTLVKNVLDLFVEI-----------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHY  224 (285)
Q Consensus       163 ~R~g~~i~~~~l~~~i~~l~~L-----------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~y  224 (285)
                      +|+|+.||+++|+++++||++|                 ++|.+||+.+|++|+++++ ++||++|+.+|++|.+||..|
T Consensus       172 eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~y  251 (410)
T 4ap2_B          172 ERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHC  251 (410)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999887                 9999999999999999999 999999999999999999999


Q ss_pred             CCcchHHHHHHHHHH----------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127          225 LQPSSNRKLANILSF----------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK  284 (285)
Q Consensus       225 l~~~t~~~l~~~l~~----------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~  284 (285)
                      |+++|.++|.+++++          +.+.++||..||++++.++|++||+||+|+++|++ +.++|+++|+
T Consensus       252 L~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~  322 (410)
T 4ap2_B          252 LDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLR  322 (410)
T ss_dssp             SCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred             cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            999999999999988          23345899999999999999999999999999974 8888888874

>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}

Probab=100.00  E-value=4.4e-54  Score=396.24  Aligned_cols=269  Identities=18%  Similarity=0.359  Sum_probs=240.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCCCCCChHHHHHHHHHHHHHHhhhhh
Q 041127            3 RKASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPHHDEDPDQMYDKYQQILADYMPSKV   81 (285)
Q Consensus         3 ~~~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~   81 (285)
                      ++..+|+++|+.|++||++|+.      ..+++..+||++|+.||++|+ ++    .  .|+.||+++++.+++|+..++
T Consensus        10 ~~~~~~e~~W~~L~~ai~~I~~------~~~~~~~s~e~LY~~vy~lc~~~~----~--~~~~LY~~l~~~~~~~l~~~~   77 (391)
T 2wzk_A           10 KGSLQFEDKWDFMHPIVLKLLR------QESVTKQQWFDLFSDVHAVCLWDD----K--GSSKIHQALKEDILEFIKQAQ   77 (391)
T ss_dssp             --CCSHHHHHHHHHHHHHHHHH------TCCCCHHHHHHHHHHHHHHHHHCT----T--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHHHh------CCCCChHHHHHHHHHHHHHHhcCc----c--chHHHHHHHHHHHHHHHHHHH
Confidence            3467999999999999999876      236888999999999999999 43    2  889999999999999999876


Q ss_pred             hhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC--------CCcchHHHHHHHHHHHHHHHHHHHHH
Q 041127           82 LPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM--------ALPELNAFGISCFRDLVFEAMKDKVK  153 (285)
Q Consensus        82 ~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~--------~~~~i~~lgl~~f~~~v~~~i~~~l~  153 (285)
                      .+.....+++. ||+.|..+|.+|+.++.+|+++|+||||+|+.++        +.++|+++|+.+||++||.+++++++
T Consensus        78 ~~~~~~~~~e~-~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~  156 (391)
T 2wzk_A           78 ARVLSHQDDTA-LLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQ  156 (391)
T ss_dssp             HHHHTCCSHHH-HHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHhccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            54333223345 9999999999999999999999999999999653        35699999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCcCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Q 041127          154 DAVVALIDREREGEEIDRTLVKNVLDLFVEI--------------------EDMAAYYSRKASNWILQDS-FDYLVNVGE  212 (285)
Q Consensus       154 ~~il~~I~~~R~g~~i~~~~l~~~i~~l~~L--------------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~  212 (285)
                      ++++.+|+++|+|+.+|+++|+++++||++|                    ++|.+||+++|++|+++++ ++||++|+.
T Consensus       157 ~~ll~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~  236 (391)
T 2wzk_A          157 DSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADA  236 (391)
T ss_dssp             HHHHHHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999999999999999999999853                    9999999999999999999 999999999


Q ss_pred             HHHHHHHHhcccCC----cchHHHHHHHHHH------HHcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHH
Q 041127          213 CLKNERERASHYLQ----PSSNRKLANILSF------MQKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEK  281 (285)
Q Consensus       213 ~l~eE~~r~~~yl~----~~t~~~l~~~l~~------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~  281 (285)
                      +|++|.+||..||+    ++|.++|.++|++      +..+.+||..||++++.+||++||+||+|+++|++ +..++++
T Consensus       237 rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~  316 (391)
T 2wzk_A          237 KLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEE  316 (391)
T ss_dssp             HHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHTTHHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHH
Confidence            99999999999999    9999999999998      34445689999999999999999999999999865 7778888


Q ss_pred             hhc
Q 041127          282 VLK  284 (285)
Q Consensus       282 ~~~  284 (285)
                      +|+
T Consensus       317 ~I~  319 (391)
T 2wzk_A          317 HII  319 (391)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A

Probab=100.00  E-value=2.7e-49  Score=390.80  Aligned_cols=267  Identities=23%  Similarity=0.440  Sum_probs=237.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCC---------------------CCCCCCChHHH
Q 041127            8 SEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPA---------------------RPHHDEDPDQM   65 (285)
Q Consensus         8 fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~---------------------~~~~~~~~~~L   65 (285)
                      |+++|+.|++||++|+.   +   .+++..+||++|+.||++|+ ++.                     +|+.  +|+.|
T Consensus         1 f~~~W~~L~~ai~~I~~---~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~L   72 (760)
T 1ldj_A            1 LDQIWDDLRAGIQQVYT---R---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQF--VGLEL   72 (760)
T ss_dssp             CHHHHHHHHHHHHHHTT---C---CCCCHHHHHHHHHHHHHHTCCC------------------------------TTHH
T ss_pred             ChhhHHHHHHHHHHHHh---c---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcch--hHHHH
Confidence            68999999999999875   1   36899999999999999999 511                     1334  78999


Q ss_pred             HHHHHHHHHHHhhhhhhhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC------CcchHHHHHHH
Q 041127           66 YDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA------LPELNAFGISC  139 (285)
Q Consensus        66 y~~l~~~l~~~~~~~~~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~------~~~i~~lgl~~  139 (285)
                      |+++++++.+|+..++. .+....++. ||..|..+|.+|+.++.+|+++|+||||+|+++++      .++|+++|+.+
T Consensus        73 Y~~l~~~l~~~l~~~~~-~~~~~~~e~-lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~  150 (760)
T 1ldj_A           73 YKRLKEFLKNYLTNLLK-DGEDLMDES-VLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVT  150 (760)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCSCTTTT-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH-HHhhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHH
Confidence            99999999999998765 334445666 99999999999999999999999999999999975      78999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHH--------------H------------HHHHHHHHH
Q 041127          140 FRDLVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE--------------I------------EDMAAYYSR  193 (285)
Q Consensus       140 f~~~v~~~i~~~l~~~il~~I~~~R~g~~i~~~~l~~~i~~l~~--------------L------------~~t~~yY~~  193 (285)
                      ||++||.+++++++++++.+|+++|+|+.||+++|+++++||++              +            ++|..||+.
T Consensus       151 fr~~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~  230 (760)
T 1ldj_A          151 WRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTR  230 (760)
T ss_dssp             THHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999986              2            899999999


Q ss_pred             HHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------HHcchhhHHHHHhcCChhHHHHHHHhh
Q 041127          194 KASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKLANILSF------MQKGEFRCRQLLRGHKLDGHSIICCYS  266 (285)
Q Consensus       194 ~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~~l~~------l~~~~~g~~~ll~~~~~~~L~~ly~L~  266 (285)
                      +|++|+++++ ++||++|+.+|++|.+||..||+++|.++|.++|++      +..+.+||..||++++.++|++||+||
T Consensus       231 es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~~~~~~ll~~~~~~dL~~my~L~  310 (760)
T 1ldj_A          231 ESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLV  310 (760)
T ss_dssp             HHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence            9999999999 999999999999999999999999999999999998      344568999999999999999999999


Q ss_pred             cccccchh-hHHHHHHhhc
Q 041127          267 KKSKNELA-FEETLEKVLK  284 (285)
Q Consensus       267 ~~~~~~~~-~~~~~~~~~~  284 (285)
                      +|+++|++ +..+++++|+
T Consensus       311 ~rv~~gl~~l~~~~~~~i~  329 (760)
T 1ldj_A          311 SRIQDGLGELKKLLETHIH  329 (760)
T ss_dssp             HHSTTCHHHHHHHHHHHHH
T ss_pred             CcCcchHHHHHHHHHHHHH
Confidence            99999866 6667777664

>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*

Probab=100.00  E-value=2.4e-47  Score=376.76  Aligned_cols=264  Identities=20%  Similarity=0.409  Sum_probs=236.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhhhh
Q 041127            5 ASDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPY   84 (285)
Q Consensus         5 ~~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~~~   84 (285)
                      ..+|+++|+.|++||+.|+.   ++ ..+.+   ||++|+.||++|+..       .|+.||+++++.+.+|+...+. .
T Consensus        56 ~~~~e~~W~~L~~ai~~I~~---~~-~~~~s---~e~LY~~vy~lc~~k-------~~~~LY~~l~~~~~~~l~~~~~-~  120 (759)
T 2hye_C           56 DNYTQDTWRKLHEAVRAVQS---ST-SIRYN---LEELYQAVENLCSHK-------VSPMLYKQLRQACEDHVQAQIL-P  120 (759)
T ss_dssp             CCTTTTHHHHHHHHHHTTST---TC-CCSSC---HHHHHHHHHHHCCTT-------THHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cchHHHHHHHHHHHHHHHHh---CC-CCCCC---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHHHHH-H
Confidence            35679999999999999764   32 22344   999999999999943       8899999999999999998654 4


Q ss_pred             Hhh-cCC-HHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC-CcchHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 041127           85 LRE-KHD-EYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA-LPELNAFGISCFRDLVFEA--MKDKVKDAVVAL  159 (285)
Q Consensus        85 l~~-~~~-~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~-~~~i~~lgl~~f~~~v~~~--i~~~l~~~il~~  159 (285)
                      +.. ..+ +. ||..|..+|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+||++||.+  +.++++++++.+
T Consensus       121 l~~~~~~~~~-~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~l  199 (759)
T 2hye_C          121 FREDSLDSVL-FLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLL  199 (759)
T ss_dssp             HTSCCCCTTH-HHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred             HHhccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHH
Confidence            433 223 35 99999999999999999999999999999999986 7899999999999999996  999999999999


Q ss_pred             HHHHhcCCcCCHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCC
Q 041127          160 IDREREGEEIDRTLVKNVLDLFVEI------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQ  226 (285)
Q Consensus       160 I~~~R~g~~i~~~~l~~~i~~l~~L------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~  226 (285)
                      |+++|+|+.+|+++++++++||++|            ++|.+||+.+|++|+++++ ++||++|+.+|++|.+||..||+
T Consensus       200 I~~eR~Ge~id~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~  279 (759)
T 2hye_C          200 IERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD  279 (759)
T ss_dssp             HHTTTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSC
T ss_pred             HHHHhcCCCCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999998            9999999999999999999 99999999999999999999999


Q ss_pred             cchHHHHHHHHHH-H-----Hc-chhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127          227 PSSNRKLANILSF-M-----QK-GEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK  284 (285)
Q Consensus       227 ~~t~~~l~~~l~~-l-----~~-~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~  284 (285)
                      ++|.++|.++|++ |     .. ..+||..||++++.++|++||+|++|+++|++ +..+|+++|+
T Consensus       280 ~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~  345 (759)
T 2hye_C          280 HSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIK  345 (759)
T ss_dssp             TTTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence            9999999999998 2     22 23599999999999999999999999988866 7778887774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	285
d2hyec2	347	a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie	1e-35
d1ldja2	394	a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum	1e-33

>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (324), Expect = 1e-35
 Identities = 55/284 (19%), Positives = 119/284 (41%), Gaps = 30/284 (10%)

Query: 13  DYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQI 72
           +Y +  + KL      +Q       +   LY  V ++C         +    +Y + +Q 
Sbjct: 3   NYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSH-------KVSPMLYKQLRQA 55

Query: 73  LADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA-LPE 131
             D++ +++LP+  +  D    L+++   W +H      +  +FL L   Y+ + + LP 
Sbjct: 56  CEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPS 115

Query: 132 LNAFGISCFRDLVFE--AMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVE------ 183
           +   G+  FR  +     ++ K  D ++ LI+RER GE +DR+L++++L +  +      
Sbjct: 116 IWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKD 175

Query: 184 ------IEDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKLANI 236
                 +E+    Y+ +    + +    +YL +V + L+ E +R   YL  S+ + L   
Sbjct: 176 SFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIAC 235

Query: 237 LSFMQKGEFR-------CRQLLRGHKLDGHSIICCYSKKSKNEL 273
           +     GE            LL  +++   + +     + +   
Sbjct: 236 VEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQ 279

>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 1e-33
 Identities = 59/308 (19%), Positives = 120/308 (38%), Gaps = 67/308 (21%)

Query: 9   EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC----------------- 51
           ++ WD L  G  ++         ++     YM LYT VY+ C                  
Sbjct: 2   DQIWDDLRAGIQQV------YTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSK 55

Query: 52  ---KPARPHHDEDPDQMYDKYQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFL 108
                          ++Y + ++ L +Y+ + +L    +  DE  +L+   + W +++F 
Sbjct: 56  SKKGQTPGGAQFVGLELYKRLKEFLKNYL-TNLLKDGEDLMDE-SVLKFYTQQWEDYRFS 113

Query: 109 AKWLSRVFLPL------QAGYIPRMALPELNAFGISCFRDLVFEAMKDKVKDAVVALIDR 162
           +K L+ +   L      +     R  + E+ +  +  +RD +F  +  +V +AV+ LI++
Sbjct: 114 SKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEK 173

Query: 163 EREGEEIDRTLVKNVLDLFVE--------------------------IEDMAAYYSRKAS 196
           ER GE I+  L+  V+  +VE                          + D   +Y+R+++
Sbjct: 174 ERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233

Query: 197 NWILQDSF-DYLVNVGECLKNERERASHYLQPSSNRKLANIL------SFMQKGEFRCRQ 249
            ++ Q+   +Y+      L  E+ R   YL  S+  +LA           ++      + 
Sbjct: 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQN 293

Query: 250 LLRGHKLD 257
           LL   K +
Sbjct: 294 LLDADKNE 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	285
d1ldja2	394	Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax	100.0
d2hyec2	347	Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}	100.0

>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-50  Score=367.25  Aligned_cols=268  Identities=23%  Similarity=0.430  Sum_probs=237.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhc-cCCCCC-------------------CCCChHHHHHH
Q 041127            9 EEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICC-KPARPH-------------------HDEDPDQMYDK   68 (285)
Q Consensus         9 e~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~-k~~~~~-------------------~~~~~~~Ly~~   68 (285)
                      |++|+.|++||++|++      ..+++..+||++|+.||++|+ ++.+..                   ++..|+.||++
T Consensus         2 d~~W~~L~~ai~~I~~------~~~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~   75 (394)
T d1ldja2           2 DQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKR   75 (394)
T ss_dssp             HHHHHHHHHHHHHHTT------CCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHH
T ss_pred             cchHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHHhcCCccccccccccchhhhhhccccchhhhHHHHHHHH
Confidence            7899999999999875      136888899999999999999 542100                   01268899999


Q ss_pred             HHHHHHHHhhhhhhhhHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCC------CcchHHHHHHHHHH
Q 041127           69 YQQILADYMPSKVLPYLREKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRMA------LPELNAFGISCFRD  142 (285)
Q Consensus        69 l~~~l~~~~~~~~~~~l~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~~------~~~i~~lgl~~f~~  142 (285)
                      +++.+.+|+..++. .+....++. +|..+.+.|++|+.++.+|+++|+||||+|+.+++      .++|+++|+.+|++
T Consensus        76 l~~~l~~~l~~i~~-~~~~~~~~~-~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~  153 (394)
T d1ldja2          76 LKEFLKNYLTNLLK-DGEDLMDES-VLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD  153 (394)
T ss_dssp             HHHHHHHHHHHHHH-TTCSCTTTT-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHH-HHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHH
Confidence            99999999998654 555555666 99999999999999999999999999999998763      47999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHH
Q 041127          143 LVFEAMKDKVKDAVVALIDREREGEEIDRTLVKNVLDLFVEI--------------------------EDMAAYYSRKAS  196 (285)
Q Consensus       143 ~v~~~i~~~l~~~il~~I~~~R~g~~i~~~~l~~~i~~l~~L--------------------------~~t~~yY~~~s~  196 (285)
                      +||.++.++++++++++|+++|+|+.+|+++++++++|++.|                          ++|.+||+++|+
T Consensus       154 ~v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~  233 (394)
T d1ldja2         154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST  233 (394)
T ss_dssp             HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhCcchhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999865                          999999999999


Q ss_pred             HHHhhCC-hhHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHH------HHcchhhHHHHHhcCChhHHHHHHHhhccc
Q 041127          197 NWILQDS-FDYLVNVGECLKNERERASHYLQPSSNRKLANILSF------MQKGEFRCRQLLRGHKLDGHSIICCYSKKS  269 (285)
Q Consensus       197 ~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~~t~~~l~~~l~~------l~~~~~g~~~ll~~~~~~~L~~ly~L~~~~  269 (285)
                      +|+++++ ++|+++|+.++++|++||..||+++|.+++++++++      ++.+.+||..||++++.++|++||+|++|+
T Consensus       234 ~~l~~~~~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~lY~L~~rv  313 (394)
T d1ldja2         234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSRI  313 (394)
T ss_dssp             HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHHHHHHS
T ss_pred             HHHHhCChhHHHHHHHHHHHHHHHHHHHccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhhc
Confidence            9999999 999999999999999999999999999999999998      445678999999999999999999999999


Q ss_pred             ccchhh-HHHHHHhhc
Q 041127          270 KNELAF-EETLEKVLK  284 (285)
Q Consensus       270 ~~~~~~-~~~~~~~~~  284 (285)
                      ++|++. .++++++|+
T Consensus       314 ~~~~~~l~~~~~~~I~  329 (394)
T d1ldja2         314 QDGLGELKKLLETHIH  329 (394)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH
Confidence            999774 578888875

>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-49  Score=358.42  Aligned_cols=265  Identities=20%  Similarity=0.390  Sum_probs=237.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHHHHhHhhccCCCCCCCCChHHHHHHHHHHHHHHhhhhhhhhH
Q 041127            6 SDSEEGWDYLERGFTKLKRIFEGLQERAFNLEDYMMLYTIVYDICCKPARPHHDEDPDQMYDKYQQILADYMPSKVLPYL   85 (285)
Q Consensus         6 ~~fe~~W~~l~~ai~~i~~~l~~~~~~~~s~~~~~~lY~~Vy~lc~k~~~~~~~~~~~~Ly~~l~~~l~~~~~~~~~~~l   85 (285)
                      .+|+++|+.|++||++|+.   +.    .+..+|+++|+.||++|++.       +|+.||+++++.+.+|+...+.+..
T Consensus         3 ~~~e~~W~~L~~ai~~I~~---~~----~~~~s~e~lY~~vy~lc~~~-------~~~~LY~~l~~~l~~~~~~~~~~~~   68 (347)
T d2hyec2           3 NYTQDTWRKLHEAVRAVQS---ST----SIRYNLEELYQAVENLCSHK-------VSPMLYKQLRQACEDHVQAQILPFR   68 (347)
T ss_dssp             CTTTTHHHHHHHHHHTTST---TC----CCSSCHHHHHHHHHHHCCTT-------THHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHh---CC----CCCCCHHHHHHHHHHHHccC-------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999654   32    23345999999999999943       8899999999999999998877655


Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccC-CCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 041127           86 REKHDEYDLLRELLKSWANHKFLAKWLSRVFLPLQAGYIPRM-ALPELNAFGISCFRDLVFE--AMKDKVKDAVVALIDR  162 (285)
Q Consensus        86 ~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~y~~~~-~~~~i~~lgl~~f~~~v~~--~i~~~l~~~il~~I~~  162 (285)
                      ....++.++|+.+.+.|++|+.++.+|+++|+||||+|+.++ +.++|+++|+.+|++++|.  .+.++++++++++|++
T Consensus        69 ~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~lf~~~v~~~~~~~~~l~~~ll~~I~~  148 (347)
T d2hyec2          69 EDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIER  148 (347)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHT
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhcCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            544333339999999999999999999999999999999775 4679999999999999996  5899999999999999


Q ss_pred             HhcCCcCCHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHHhcccCCcch
Q 041127          163 EREGEEIDRTLVKNVLDLFVEI------------EDMAAYYSRKASNWILQDS-FDYLVNVGECLKNERERASHYLQPSS  229 (285)
Q Consensus       163 ~R~g~~i~~~~l~~~i~~l~~L------------~~t~~yY~~~s~~~i~~~s-~~Yl~~~~~~l~eE~~r~~~yl~~~t  229 (285)
                      +|+|+.+|+.++++++.|+..|            ++|.+||+.+|++|+++++ ++|+++|+.++++|.+||..|++++|
T Consensus       149 ~R~g~~i~~~ll~~~~~~~~~l~~Y~~~fE~~~l~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t  228 (347)
T d2hyec2         149 ERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHST  228 (347)
T ss_dssp             TTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTT
T ss_pred             HHcCCCCcHHHHHHHHHHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccHhH
Confidence            9999999999999999999988            9999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHHHHH-H------HcchhhHHHHHhcCChhHHHHHHHhhcccccchh-hHHHHHHhhc
Q 041127          230 NRKLANILSF-M------QKGEFRCRQLLRGHKLDGHSIICCYSKKSKNELA-FEETLEKVLK  284 (285)
Q Consensus       230 ~~~l~~~l~~-l------~~~~~g~~~ll~~~~~~~L~~ly~L~~~~~~~~~-~~~~~~~~~~  284 (285)
                      .+++++++++ |      ..+++||..||++++.++|++||+|++|+++|++ +.++++++++
T Consensus       229 ~~~l~~~l~~~Li~~~~~~il~~~~~~ll~~~~~~~L~~ly~L~~r~~~~~~~l~~~f~~~i~  291 (347)
T d2hyec2         229 QKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIK  291 (347)
T ss_dssp             HHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhccCcHHHHHHHHHHHHH
Confidence            9999999988 2      2346799999999999999999999999998876 6888888875