Citrus Sinensis ID: 041136
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 214 | 2.2.26 [Sep-21-2011] | |||||||
| P0C8L4 | 209 | Uncharacterized protein A | no | no | 0.934 | 0.956 | 0.457 | 2e-45 | |
| O94480 | 282 | UPF0617 protein C1919.13c | yes | no | 0.841 | 0.638 | 0.326 | 5e-21 | |
| Q3UY23 | 622 | Ferredoxin-fold anticodon | yes | no | 0.841 | 0.289 | 0.282 | 3e-14 | |
| Q9BRP7 | 624 | Ferredoxin-fold anticodon | yes | no | 0.785 | 0.269 | 0.303 | 4e-14 | |
| P40493 | 336 | UPF0617 protein YIL096C O | yes | no | 0.859 | 0.547 | 0.246 | 1e-10 |
| >sp|P0C8L4|Y4648_ARATH Uncharacterized protein At4g26485 OS=Arabidopsis thaliana GN=At4g26485 PE=4 SV=1 | Back alignment and function desciption |
|---|
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/201 (45%), Positives = 127/201 (63%), Gaps = 1/201 (0%)
Query: 11 KWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQS 70
KWI HY++ +ILLVGEG+FSFS CLA AFGSA N+ A+SLDSE L K+ + ++
Sbjct: 6 KWIRHYSSTHKILLVGEGNFSFSLCLASAFGSAMNITATSLDSEDELSIKYMDAVDNINI 65
Query: 71 LWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLE 130
L GC + H V+VHTM +LS ++D I+FNFPHAG E + I+ HK L+
Sbjct: 66 LKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFNFPHAGSRFFGRELSSRAIESHKELVR 125
Query: 131 AFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNKR 190
FL+N +EML E GE+H+T + +P++ W + L GL L +K +F +PGY KR
Sbjct: 126 GFLENAKEMLEEDGEIHITHKTTYPFSDWGIKKLGKGEGLKLLKKSKFELSHYPGYITKR 185
Query: 191 G-GGVKSNKKFPLKECFTFKF 210
G GG +S+ FP+ EC T+ F
Sbjct: 186 GSGGRRSDDYFPVGECSTYMF 206
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O94480|YC6D_SCHPO UPF0617 protein C1919.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1919.13c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 96/184 (52%), Gaps = 4/184 (2%)
Query: 11 KWISHYTNNQRILLVGEGDFSFS-DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ 69
+++ + N R LL+GEG+FSF+ L S ++A+S DS+ LK K+ + ++
Sbjct: 49 RYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYPDAAEYIS 108
Query: 70 SLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL 129
+ G V+H ++ + H L KFD I +NFPH+G + +QD N++ K LL
Sbjct: 109 KIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSGKG--IKDQDRNILDNQKMLL 166
Query: 130 EAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNK 189
AF K + +L E G + +TL + PY WN+ GLA G +F +P Y ++
Sbjct: 167 -AFFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYPEYSHR 225
Query: 190 RGGG 193
R G
Sbjct: 226 RTIG 229
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q3UY23|FDXA1_MOUSE Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog OS=Mus musculus GN=Fdxacb1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 22/202 (10%)
Query: 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVL 79
+R+LLVGEG+FSF+ L + ++ A+ L+ + +L+ L RG V
Sbjct: 4 RRLLLVGEGNFSFAASLIDGLDPSVSVTATGFQHRAALEGDP-VALENLKRLRERGVEVR 62
Query: 80 HGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREM 139
GV+ + FD I FNFPH G + +++ LL F ++ ++
Sbjct: 63 FGVDCTQLSHALPADDRDFDRIYFNFPHCGRKAG--------VAKNRELLAKFFQSCADV 114
Query: 140 LGEGGEVHVTL-------RDDHP----YNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHN 188
L + GEVHVTL D P +N W V+ +A G +L + F + PGY
Sbjct: 115 LAKAGEVHVTLCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVCPFSCEAVPGY-- 172
Query: 189 KRGGGVKSNKKFPLKECFTFKF 210
K G ++ F ++ T+ F
Sbjct: 173 KCTGYRSQDRPFHIEGALTYIF 194
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Mus musculus (taxid: 10090) |
| >sp|Q9BRP7|FDXA1_HUMAN Ferredoxin-fold anticodon-binding domain-containing protein 1 OS=Homo sapiens GN=FDXACB1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 23/191 (12%)
Query: 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVL 79
+R+LLVGEG+FSF+ L+ +T + A+ L L + + +LQ L RG V
Sbjct: 4 RRLLLVGEGNFSFAAALSETLDQSTQLTATCLQRPAEL-ARDPLAWENLQCLRERGIDVR 62
Query: 80 HGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREM 139
GV+ + L + +FD I F FPH G + +++ LL F ++ ++
Sbjct: 63 FGVDCTQLADVFELHEREFDQIYFIFPHCGRKAG--------VAKNRELLAKFFQSCADV 114
Query: 140 LGEGGEVHVTL-------RDDHP----YNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHN 188
L E GEVHV L D P +N W V+ +A GL+L + F + GY
Sbjct: 115 LAEEGEVHVALCRGQGGTPADKPQREWHNSWQVVAMAALGGLILSDVYPFSCKAVAGY-- 172
Query: 189 KRGGGVKSNKK 199
+ G +S K
Sbjct: 173 -KCTGYRSQDK 182
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Homo sapiens (taxid: 9606) |
| >sp|P40493|YIJ6_YEAST UPF0617 protein YIL096C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL096C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 59/243 (24%)
Query: 16 YTNNQRILLVGEGDFSFSDCLA-RAFGSATNMVASSLDS---ERTLKTKHWTSQAHLQSL 71
+ ++ ++L GEGDFSF+ + + + + N++ +S D+ E LK H T + + Q L
Sbjct: 68 FEKDETLMLCGEGDFSFARSIVEQNYIESDNLIITSYDNSVNELKLKYPH-TFEENYQYL 126
Query: 72 WSRGCLVLHGVNVHTMDRHPTLSQMK--FDVI----------------IFNFPHAGHSPP 113
+ ++V + + +S+ F +I +FNFPH G
Sbjct: 127 KDLNIPIFFQIDVTKLVKSFKISKNNTWFKIINRLSDHRWGNKPLQNIVFNFPHNGKG-- 184
Query: 114 LSEQDTNLIKRHKNLLEAFLKN-------------------------------GREMLGE 142
+ +Q+ N I+ H++L+ F +N +++ E
Sbjct: 185 IKDQERN-IREHQDLIFNFFQNSLQLFNLINTKIQNDTLRYTQGYDLNEDTPQAKKLTAE 243
Query: 143 G-GEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNKRGGGVKSNKKFP 201
G G + ++L D PY+ W + LA K GL L +F ++FPGYH++R + K P
Sbjct: 244 GYGNIILSLFDGEPYDSWQIKLLAKKNGLTLSRSSKFQWENFPGYHHRRTNSEQDTTK-P 302
Query: 202 LKE 204
KE
Sbjct: 303 AKE 305
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 214 | ||||||
| 147811220 | 267 | hypothetical protein VITISV_013132 [Viti | 0.981 | 0.786 | 0.623 | 3e-74 | |
| 296088790 | 365 | unnamed protein product [Vitis vinifera] | 0.981 | 0.575 | 0.619 | 1e-73 | |
| 296085067 | 634 | unnamed protein product [Vitis vinifera] | 0.971 | 0.328 | 0.622 | 1e-70 | |
| 359485858 | 245 | PREDICTED: uncharacterized protein At4g2 | 0.971 | 0.848 | 0.622 | 3e-70 | |
| 224117576 | 223 | predicted protein [Populus trichocarpa] | 0.943 | 0.905 | 0.490 | 4e-53 | |
| 224117572 | 220 | predicted protein [Populus trichocarpa] | 0.962 | 0.936 | 0.471 | 5e-50 | |
| 356499404 | 263 | PREDICTED: uncharacterized protein At4g2 | 0.925 | 0.752 | 0.497 | 2e-49 | |
| 357154056 | 245 | PREDICTED: uncharacterized protein At4g2 | 0.967 | 0.844 | 0.447 | 1e-48 | |
| 356532867 | 233 | PREDICTED: uncharacterized protein At4g2 | 0.971 | 0.892 | 0.469 | 6e-48 | |
| 242045088 | 211 | hypothetical protein SORBIDRAFT_02g02777 | 0.943 | 0.957 | 0.475 | 8e-48 |
| >gi|147811220|emb|CAN76875.1| hypothetical protein VITISV_013132 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 131/210 (62%), Positives = 160/210 (76%)
Query: 4 KKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWT 63
K++ KK +WI HY++ Q+ILLVGEGDFSFS CLAR FGSA NMVA+SLD + + KHW+
Sbjct: 2 KRTKKKERWIQHYSSFQKILLVGEGDFSFSACLARQFGSAVNMVATSLDPQEIVYAKHWS 61
Query: 64 SQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIK 123
HLQ L GC VLH V+V M+RHPTL M+FDVI+FNFPHAGH P L E++ LIK
Sbjct: 62 CATHLQELKRLGCRVLHEVDVKEMNRHPTLINMEFDVIVFNFPHAGHFPGLCERNVKLIK 121
Query: 124 RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDF 183
H+ +L+AF K+ +ML GGEVHVT RDD+PYN W V LA+ GL LKEKVEF K+D+
Sbjct: 122 MHREILKAFFKSASDMLSSGGEVHVTHRDDYPYNIWKVEKLANGAGLYLKEKVEFQKKDY 181
Query: 184 PGYHNKRGGGVKSNKKFPLKECFTFKFCLA 213
PGYHNKRGG + SNK FPLK+C+TFKF +A
Sbjct: 182 PGYHNKRGGAIHSNKTFPLKDCYTFKFSVA 211
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088790|emb|CBI38240.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 130/210 (61%), Positives = 159/210 (75%)
Query: 4 KKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWT 63
K++ KK +WI HY++ Q+ILLVGEGDFSFS CLAR FGSA NMVA+SLD + + KHW+
Sbjct: 82 KRTKKKERWIQHYSSFQKILLVGEGDFSFSACLARQFGSAVNMVATSLDPQEIVYAKHWS 141
Query: 64 SQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIK 123
HLQ L GC VLH V+V M+RHPTL M+FDVI+FNFPHAGH P L E++ LIK
Sbjct: 142 CATHLQELKRLGCRVLHEVDVKEMNRHPTLINMEFDVIVFNFPHAGHFPGLCERNVKLIK 201
Query: 124 RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDF 183
H+ +L+AF K+ +ML GGEVHVT RDD+PYN W V LA+ GL LKEKVEF K+D+
Sbjct: 202 MHREILKAFFKSASDMLSSGGEVHVTHRDDYPYNIWKVEKLANGAGLYLKEKVEFQKKDY 261
Query: 184 PGYHNKRGGGVKSNKKFPLKECFTFKFCLA 213
PGYHNKRGG + SNK FPLK+C+TFKF +
Sbjct: 262 PGYHNKRGGAIGSNKTFPLKDCYTFKFSVG 291
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296085067|emb|CBI28482.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/209 (62%), Positives = 157/209 (75%), Gaps = 1/209 (0%)
Query: 4 KKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWT 63
K NKK + HY+++Q+IL VGEGDFSFS CLAR FGSA NMVA+SLD E + TKHW+
Sbjct: 2 KTMNKKERSTQHYSSSQKILFVGEGDFSFSACLARQFGSAVNMVATSLDPEEMVYTKHWS 61
Query: 64 SQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIK 123
+ HL+ L GCLVLH V+V M RHPTL M+FD I+FNFPHAGH P L E++ LIK
Sbjct: 62 CETHLEELKRLGCLVLHEVDVKEMSRHPTLIHMEFDFIVFNFPHAGHFPWLCERNVQLIK 121
Query: 124 RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDF 183
H+ LL+AF ++ EML GGEVHVT RDD PYN+W V LA GL LKEKVEF ++D+
Sbjct: 122 MHRKLLKAFFESASEMLSSGGEVHVTHRDDFPYNRWKVEKLAKGAGLYLKEKVEF-QKDY 180
Query: 184 PGYHNKRGGGVKSNKKFPLKECFTFKFCL 212
PGYHNKRGGG+KSNK FPLK+ +TFKF +
Sbjct: 181 PGYHNKRGGGIKSNKTFPLKDSYTFKFSV 209
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485858|ref|XP_002266895.2| PREDICTED: uncharacterized protein At4g26485-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 130/209 (62%), Positives = 157/209 (75%), Gaps = 1/209 (0%)
Query: 4 KKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWT 63
K NKK + HY+++Q+IL VGEGDFSFS CLAR FGSA NMVA+SLD E + TKHW+
Sbjct: 2 KTMNKKERSTQHYSSSQKILFVGEGDFSFSACLARQFGSAVNMVATSLDPEGMVYTKHWS 61
Query: 64 SQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIK 123
+ HL+ L GCLVLH V+V M RHPTL M+FD I+FNFPHAGH P L E++ LIK
Sbjct: 62 CETHLEELKRLGCLVLHEVDVKEMSRHPTLIHMEFDFIVFNFPHAGHFPWLCERNVQLIK 121
Query: 124 RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDF 183
H+ LL+AF ++ EML GGEVHVT RDD PYN+W V LA GL LKEKVEF ++D+
Sbjct: 122 MHRKLLKAFFESASEMLSSGGEVHVTHRDDFPYNRWKVEKLAKGAGLYLKEKVEF-QKDY 180
Query: 184 PGYHNKRGGGVKSNKKFPLKECFTFKFCL 212
PGYHNKRGGG+KSNK FPLK+ +TFKF +
Sbjct: 181 PGYHNKRGGGIKSNKTFPLKDSYTFKFSV 209
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117576|ref|XP_002317613.1| predicted protein [Populus trichocarpa] gi|222860678|gb|EEE98225.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 142/204 (69%), Gaps = 2/204 (0%)
Query: 7 NKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQA 66
NK+ KWI HY++ Q++LLVG+GDFSF+ CLA AFGSATN+VA+SL SE ++ K+ + +
Sbjct: 16 NKEEKWIKHYSSTQKMLLVGDGDFSFAVCLAEAFGSATNIVATSLYSEEMMRLKYSGAAS 75
Query: 67 HLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHK 126
+L+ L GC V+HGVN HTM+ HP L+ F I++NFPHA + SE + I+ H+
Sbjct: 76 NLRELEELGCTVMHGVNAHTMNSHPLLTHKLFGRIVYNFPHA--ALKRSEANIRQIESHR 133
Query: 127 NLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGY 186
L++ F K+ +M+ E GEVHVT + PY++W + LA++ GL L EKV+F K D+PGY
Sbjct: 134 RLVKGFFKSASDMMEENGEVHVTHKTPDPYSKWEIEKLAEEAGLFLVEKVKFRKSDYPGY 193
Query: 187 HNKRGGGVKSNKKFPLKECFTFKF 210
NKRG G ++++ FP C TFKF
Sbjct: 194 ENKRGSGSRADESFPPGNCCTFKF 217
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117572|ref|XP_002317612.1| predicted protein [Populus trichocarpa] gi|222860677|gb|EEE98224.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 139/208 (66%), Gaps = 2/208 (0%)
Query: 6 SNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQ 65
+NK+VKW+ HY++ +ILLVGEGDFSF+ CL +AFGSA NMVA+SL S+ T+ K+ S
Sbjct: 14 NNKEVKWMKHYSSCHKILLVGEGDFSFAACLGKAFGSAVNMVATSLYSKETMMLKYSKSA 73
Query: 66 AHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRH 125
+L L GC ++H V+VH M +HP L Q FD I+FNFP + SE + I++H
Sbjct: 74 TNLTELEDLGCTIIHEVDVHNMRKHPLLKQKLFDRIVFNFP--ATALKWSESNVRQIEKH 131
Query: 126 KNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPG 185
+ L++ FL++ +ML E GEVHVT + PY +W + LA+ +GL L EKV F + ++PG
Sbjct: 132 QRLVKGFLRSCHDMLEENGEVHVTHKIKEPYCKWEIEKLAEDVGLYLVEKVWFRRSEYPG 191
Query: 186 YHNKRGGGVKSNKKFPLKECFTFKFCLA 213
Y NKRG G ++++ FP +TFKF A
Sbjct: 192 YGNKRGSGARADETFPAGNSYTFKFSRA 219
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499404|ref|XP_003518531.1| PREDICTED: uncharacterized protein At4g26485-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/201 (49%), Positives = 143/201 (71%), Gaps = 3/201 (1%)
Query: 11 KWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQS 70
K I HY+++ +ILLVGEGDFSFS LA AFGSA+NMVA+SLDS+ T+ K+ + +L
Sbjct: 4 KKIKHYSSHHKILLVGEGDFSFSLSLANAFGSASNMVATSLDSKVTVIGKYSRASTNLNE 63
Query: 71 LWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLE 130
L + GC ++H V+VHTM++HP L + FD I+FNFPHAG E D+ I+ HK+++
Sbjct: 64 LENLGCTIVHEVDVHTMNKHPLLQRKYFDRIVFNFPHAGFV--YREHDSCQIELHKHVVL 121
Query: 131 AFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG-LVLKEKVEFLKQDFPGYHNK 189
FLK+ R+M+ + GE+HVT ++ HP+N W V+ LA++L LVL E+V F ++PGY NK
Sbjct: 122 GFLKSARQMVSQDGEIHVTHKNAHPFNNWKVVKLAEELAKLVLVERVPFYLFEYPGYINK 181
Query: 190 RGGGVKSNKKFPLKECFTFKF 210
RG G + ++ FP+ +C TFKF
Sbjct: 182 RGSGHRCDQSFPVGDCSTFKF 202
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357154056|ref|XP_003576655.1| PREDICTED: uncharacterized protein At4g26485-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 135/208 (64%), Gaps = 1/208 (0%)
Query: 5 KSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTS 64
+ K VKW+ HY++ Q IL++G+GDFSFS LA AFGS N+VA+SLDS L K+ +
Sbjct: 6 RKGKGVKWLKHYSSAQSILIIGDGDFSFSMALATAFGSGANLVATSLDSYEALICKYSEA 65
Query: 65 QAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKR 124
++++ L G VLHGVN M H L +FD I+FNFPHAG ++ ++
Sbjct: 66 ESNVMELKITGATVLHGVNAKKMKSHTYLKTRQFDRIVFNFPHAGFKAK-DYKEVQMVSL 124
Query: 125 HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFP 184
HK L++ FL N R +L GE+H++ + +PY++WN+ LA + L + +KV+F K+D+P
Sbjct: 125 HKVLVKGFLANARCLLHPYGEIHISHKIGYPYDEWNLEQLASESSLTMIKKVKFQKEDYP 184
Query: 185 GYHNKRGGGVKSNKKFPLKECFTFKFCL 212
GY+ KRG G K N+ FPL EC TF+FC+
Sbjct: 185 GYNQKRGDGAKCNRSFPLGECCTFQFCI 212
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532867|ref|XP_003534991.1| PREDICTED: uncharacterized protein At4g26485-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 139/211 (65%), Gaps = 3/211 (1%)
Query: 1 MPQKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTK 60
+ ++S K KW +HY++N RILLVG+GDFSFS CLARAFGSA N+VA+SLDS ++ K
Sbjct: 22 LEDQESAKAEKWKNHYSSNHRILLVGDGDFSFSLCLARAFGSAHNLVATSLDSYDSIGKK 81
Query: 61 HWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTN 120
+ +++ L RGCLV HGV+ M +H L +FD I++NFPH G P E
Sbjct: 82 YSNGLSNVMELQERGCLVFHGVDAKEMSQHFFLKTQRFDRIVYNFPHVGFIYP--ENSHC 139
Query: 121 LIKRHKNLLEAFLKNGREML-GEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFL 179
I+ +K LL+ FL N + ++ EGGE+HVT ++ PYN+W+++ +K GLVL++ V F
Sbjct: 140 QIQLNKRLLKGFLANAKALIKKEGGEIHVTHKEGDPYNKWDLVKKPEKRGLVLQQVVPFF 199
Query: 180 KQDFPGYHNKRGGGVKSNKKFPLKECFTFKF 210
K D+PGY NKR G S+ FP+ E T+KF
Sbjct: 200 KDDYPGYDNKRAHGKLSDAPFPVGEASTYKF 230
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242045088|ref|XP_002460415.1| hypothetical protein SORBIDRAFT_02g027770 [Sorghum bicolor] gi|241923792|gb|EER96936.1| hypothetical protein SORBIDRAFT_02g027770 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 134/204 (65%), Gaps = 2/204 (0%)
Query: 11 KWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQS 70
K + HY++ Q ILLVG+GDFSFS LA AFGS N+VA+SLD+ LK K+ +++++
Sbjct: 9 KRVKHYSSAQSILLVGDGDFSFSLALATAFGSGANLVATSLDTYGALKIKYHHAESNIME 68
Query: 71 LWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLE 130
L G VLHGV+V TM H L +FD ++FNFPHAG E + ++I H+ L+
Sbjct: 69 LKRLGARVLHGVDVKTMRLHTDLKNRRFDRVVFNFPHAGFRG--REYEVHMINSHRELVS 126
Query: 131 AFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNKR 190
+F N R +LG GEVHV+ + HPY+ W++ GLA + L+L EKV F K+D+PGYH K+
Sbjct: 127 SFFSNARHLLGRHGEVHVSHKTGHPYDSWDLGGLASESSLLLIEKVGFHKEDYPGYHQKK 186
Query: 191 GGGVKSNKKFPLKECFTFKFCLAK 214
G GV NK F L C TFKF +++
Sbjct: 187 GDGVNCNKPFKLDPCCTFKFQISE 210
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 214 | ||||||
| TAIR|locus:2161745 | 220 | AT5G56060 [Arabidopsis thalian | 0.878 | 0.854 | 0.479 | 2e-40 | |
| TAIR|locus:504954949 | 256 | AT5G56075 [Arabidopsis thalian | 0.878 | 0.734 | 0.406 | 2.2e-34 | |
| TAIR|locus:2179265 | 193 | AT5G25030 [Arabidopsis thalian | 0.859 | 0.953 | 0.402 | 9.5e-34 | |
| TAIR|locus:2012115 | 314 | AT1G55800 "AT1G55800" [Arabido | 0.196 | 0.133 | 0.666 | 5.1e-28 | |
| POMBASE|SPCC1919.13c | 282 | SPCC1919.13c "ribosome biogene | 0.859 | 0.652 | 0.324 | 7.8e-23 | |
| UNIPROTKB|G4MUS2 | 346 | MGG_11170 "Uncharacterized pro | 0.448 | 0.277 | 0.376 | 6.3e-17 | |
| ZFIN|ZDB-GENE-030131-8403 | 582 | si:dkey-71l1.3 "si:dkey-71l1.3 | 0.850 | 0.312 | 0.315 | 1.1e-16 | |
| UNIPROTKB|J9PAV7 | 809 | ALG9 "Uncharacterized protein" | 0.794 | 0.210 | 0.307 | 3.1e-13 | |
| MGI|MGI:3584513 | 622 | Fdxacb1 "ferredoxin-fold antic | 0.841 | 0.289 | 0.287 | 9e-13 | |
| SGD|S000001358 | 336 | YIL096C "Putative S-adenosylme | 0.313 | 0.199 | 0.362 | 1e-12 |
| TAIR|locus:2161745 AT5G56060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 92/192 (47%), Positives = 123/192 (64%)
Query: 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW 72
+ Y+N Q+ILLVGEGDFSFS LAR FGSATN+ A+SLD+ L K+ +A+++ L
Sbjct: 9 LQQYSNKQKILLVGEGDFSFSLSLARVFGSATNITATSLDTREELGIKYTDGKANVEGLE 68
Query: 73 SRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAF 132
GC V+HGVNVH+M L ++D IIFNFPH+G SE D I H+ L+ F
Sbjct: 69 LFGCTVVHGVNVHSMSSDYRLG--RYDRIIFNFPHSGLGFG-SEHDIFFIMLHQGLVRGF 125
Query: 133 LKNGREML-GEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNKRG 191
L++ R+ML E GE+HVT + P+N+W + LA + GL L ++EF K FPGY NK+G
Sbjct: 126 LESARKMLKDEDGEIHVTHKTTDPFNRWGIETLAGEKGLRLIGEIEFHKWAFPGYSNKKG 185
Query: 192 GGVKSNKKFPLK 203
GG N F L+
Sbjct: 186 GGSNCNSTFLLR 197
|
|
| TAIR|locus:504954949 AT5G56075 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 83/204 (40%), Positives = 123/204 (60%)
Query: 8 KKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAH 67
++ K + HYTN Q+ILLVGEGDFSFS LARAFGSA+N+ A+SLD++ L+ K +A+
Sbjct: 62 QETKRLRHYTNKQKILLVGEGDFSFSLSLARAFGSASNLTATSLDTQGELEQKFKNGKAN 121
Query: 68 LQSLWSRGCLVLHGVNVHTMDRHPTLSQMK-FDVIIFNFPHAGHSPPLSEQDTNLIKRHK 126
++ L GC V++GVNVH+M P++ +D +IFNFP H L++
Sbjct: 122 VEELERLGCSVVYGVNVHSMITKPSVGGSAIYDRVIFNFPT--HE---------LVRGFM 170
Query: 127 NLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGY 186
+K+ +GGE+HV + ++P+++W + L +K GL L +VEF +PGY
Sbjct: 171 KSARVLVKDE----DKGGEIHVIHKTEYPFSEWKLKTLGEKEGLDLIREVEFCLSHYPGY 226
Query: 187 HNKRGGGVKSNKKFPLKECFTFKF 210
NKRG G S+ FP+ + TF F
Sbjct: 227 FNKRGSGGYSDSSFPVGKSSTFMF 250
|
|
| TAIR|locus:2179265 AT5G25030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 81/201 (40%), Positives = 122/201 (60%)
Query: 11 KWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQS 70
K +S Y+N Q+IL+VGEG+FSFS LA+A GSATN+ A SLD L + + +++
Sbjct: 7 KRLSRYSNEQKILVVGEGEFSFSLSLAKALGSATNITAISLDIREDLGRNYNNGKGNVEE 66
Query: 71 LWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLE 130
L GC V+ GVNVH+M L+ +D+IIFNFPHAG KR+K +
Sbjct: 67 LERLGCTVVRGVNVHSMKSDDRLAH--YDIIIFNFPHAG-------------KRNK-VFG 110
Query: 131 AFLKNGREML-GEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNK 189
F+++ REM+ E GE+H+TL +P+N+W++ LA++ GL L ++++F+K FP NK
Sbjct: 111 GFMESAREMMKDEDGEIHITLNTLNPFNKWDLKALAEESGLRLIQRMQFIKWAFPSSSNK 170
Query: 190 RGGGVKSNKKFPLKECFTFKF 210
R G + +P+ T+ F
Sbjct: 171 RESGSNCDFIYPIGSAITYMF 191
|
|
| TAIR|locus:2012115 AT1G55800 "AT1G55800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 147 (56.8 bits), Expect = 5.1e-28, Sum P(3) = 5.1e-28
Identities = 28/42 (66%), Positives = 34/42 (80%)
Query: 12 WISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDS 53
W+ HY++ +ILLVGEGDFSFS LA FGSA+N+ ASSLDS
Sbjct: 18 WVKHYSSKHQILLVGEGDFSFSCSLATCFGSASNIYASSLDS 59
|
|
| POMBASE|SPCC1919.13c SPCC1919.13c "ribosome biogenesis protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 61/188 (32%), Positives = 96/188 (51%)
Query: 4 KKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMV-ASSLDSERTLKTKHW 62
K +++ + N R LL+GEG+FSF+ L S+ V A+S DS+ LK K+
Sbjct: 42 KNKGPTERYVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSSEGFVLATSYDSKEDLKQKYP 101
Query: 63 TSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLI 122
+ ++ + G V+H ++ + H L KFD I +NFPH+G + +QD N++
Sbjct: 102 DAAEYISKIEINGGKVMHEIDATKLHLHKKLKTQKFDTIFWNFPHSGKG--IKDQDRNIL 159
Query: 123 KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQD 182
K LL AF K + +L E G + +TL + PY WN+ GLA G +F
Sbjct: 160 DNQKMLL-AFFKASKFLLSEKGVIVITLAETKPYTLWNLKGLAKDAGYTSLMTEKFDSSF 218
Query: 183 FPGYHNKR 190
+P Y ++R
Sbjct: 219 YPEYSHRR 226
|
|
| UNIPROTKB|G4MUS2 MGG_11170 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 38/101 (37%), Positives = 52/101 (51%)
Query: 99 DVIIFNFPHAG-HSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN 157
D I+FNFPH G S ++ Q ++ ++ LL F K L GG + VTL + PY
Sbjct: 196 DRILFNFPHVGGKSTDVNRQ----VRYNQELLVDFFKRANCCLSPGGSIVVTLFEGEPYT 251
Query: 158 QWNVMGLADKLGLVLKEKVEFLKQDFPGYHNKRGGGVKSNK 198
WNV LA GL ++ F +PGYH+ R GV +K
Sbjct: 252 LWNVRDLARHSGLQVERSFAFRADAYPGYHHARTLGVVRSK 292
|
|
| ZFIN|ZDB-GENE-030131-8403 si:dkey-71l1.3 "si:dkey-71l1.3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 215 (80.7 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 65/206 (31%), Positives = 99/206 (48%)
Query: 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC 76
+ + +LLVGEG+FSFS L+ G + A+ SE + + ++Q L RG
Sbjct: 2 SKTREVLLVGEGNFSFSAALSETGGDDVGVTATCFQSENETYRQEGVA-LNVQRLRERGS 60
Query: 77 LVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNG 136
+VL V+ + H L FD +IFNFPH G +K+++ LL F +
Sbjct: 61 VVLFEVDCTCLKEHEALQDHLFDCVIFNFPHCGRKSG--------VKKNRVLLMKFFLSA 112
Query: 137 REMLGEGGEVHVTLRD-------DHP----YNQWNVMGLADKLGLVLKEKVEFLKQDFPG 185
+L + GEVHVTL + D P +N W V+ +A + GL+L+E F + + G
Sbjct: 113 VAVLKDNGEVHVTLCNGQGGTPCDSPMREWHNSWQVVAMAAEAGLILREIRPFECEMYQG 172
Query: 186 YHNKRGGGVKSNKK-FPLKECFTFKF 210
Y R G +S K F ++ T F
Sbjct: 173 Y---RCTGYRSQDKGFHVEGALTHIF 195
|
|
| UNIPROTKB|J9PAV7 ALG9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 59/192 (30%), Positives = 93/192 (48%)
Query: 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVL 79
+R+LLVGEG+FSF+ L+ +T + A+ L + + ++ +L+ L RG +L
Sbjct: 4 RRLLLVGEGNFSFAAALSETLDGSTRVTATCLQRAADV-ARDPVARENLRRLRERGTEIL 62
Query: 80 HGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREM 139
V+ + L +FD I FNFPH G ++ +++ LL F ++ +++
Sbjct: 63 FCVDCTRLADALELHPREFDRIYFNFPHCGRKAGVA--------KNRELLAKFFQSCKDV 114
Query: 140 LGEGGEVHVTL-RD------DHP----YNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHN 188
L E GEVHV L R D P +N W V+ +A G +L E F + PGY
Sbjct: 115 LAEEGEVHVALCRGQGGTSADKPRREWHNSWQVVAMAALGGFILSEVHPFSCESVPGY-- 172
Query: 189 KRGGGVKSNKKF 200
K G +K F
Sbjct: 173 KCTGYRSQDKSF 184
|
|
| MGI|MGI:3584513 Fdxacb1 "ferredoxin-fold anticodon binding domain containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 58/202 (28%), Positives = 93/202 (46%)
Query: 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVL 79
+R+LLVGEG+FSF+ L + ++ A+ L+ + +L+ L RG V
Sbjct: 4 RRLLLVGEGNFSFAASLIDGLDPSVSVTATGFQHRAALEGDP-VALENLKRLRERGVEVR 62
Query: 80 HGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREM 139
GV+ + FD I FNFPH G ++ +++ LL F ++ ++
Sbjct: 63 FGVDCTQLSHALPADDRDFDRIYFNFPHCGRKAGVA--------KNRELLAKFFQSCADV 114
Query: 140 LGEGGEVHVTL-RD------DHP----YNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHN 188
L + GEVHVTL R D P +N W V+ +A G +L + F + PGY
Sbjct: 115 LAKAGEVHVTLCRGQGGTPADKPQREWHNSWQVVAMAALGGFILSDVCPFSCEAVPGY-- 172
Query: 189 KRGGGVKSNKKFPLKECFTFKF 210
K G ++ F ++ T+ F
Sbjct: 173 KCTGYRSQDRPFHIEGALTYIF 194
|
|
| SGD|S000001358 YIL096C "Putative S-adenosylmethionine-dependent methyltransferase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 120 (47.3 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 137 REMLGEG-GEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNKRGGGVK 195
+++ EG G + ++L D PY+ W + LA K GL L +F ++FPGYH++R +
Sbjct: 238 KKLTAEGYGNIILSLFDGEPYDSWQIKLLAKKNGLTLSRSSKFQWENFPGYHHRRTNSEQ 297
Query: 196 SNKKFPLKE 204
K P KE
Sbjct: 298 DTTK-PAKE 305
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 214 | |||
| pfam10354 | 166 | pfam10354, DUF2431, Domain of unknown function (DU | 2e-69 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 0.001 |
| >gnl|CDD|220711 pfam10354, DUF2431, Domain of unknown function (DUF2431) | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 2e-69
Identities = 81/169 (47%), Positives = 107/169 (63%), Gaps = 3/169 (1%)
Query: 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82
LLVGEGDFSFS LA FGS TN+VA+SLDS L+ K+ ++ +LQ L G VLHGV
Sbjct: 1 LLVGEGDFSFSLALATHFGSPTNLVATSLDSREELEEKYGDAEENLQELEENGVTVLHGV 60
Query: 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGE 142
+ + +H L + FD IIFNFPH G + I+ ++ LL F KN E+L
Sbjct: 61 DATKLKKHFRLKKNSFDRIIFNFPHVG---GKIKDSDRNIRLNRELLRGFFKNASELLKP 117
Query: 143 GGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPGYHNKRG 191
GGE+HVTL+D PYN WN+ LA + GL+L+E V+F D+PGY ++R
Sbjct: 118 GGEIHVTLKDGEPYNSWNIEALAAEAGLILEESVKFDISDYPGYKHRRT 166
|
This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known. Length = 166 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.001
Identities = 31/126 (24%), Positives = 44/126 (34%), Gaps = 21/126 (16%)
Query: 21 RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLH 80
R+L G G +F ARA A +V LD E + + A L
Sbjct: 3 RVLDPGAGSGAFLLAAARAGPDA-RVVGVELDPEAAALARRRLALAGLA----------P 51
Query: 81 GVNVHTMD--RHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGRE 138
V V D L FD+++ N PP K +++L + FL
Sbjct: 52 RVRVVVGDARELLELPDGSFDLVLGN-------PPYG-PRAGDPKDNRDLYDRFLAAALR 103
Query: 139 MLGEGG 144
+L GG
Sbjct: 104 LLKPGG 109
|
This family contains methyltransferase domains. Length = 117 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 214 | |||
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 100.0 | |
| KOG4174 | 282 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.45 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.26 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.19 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.16 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.03 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.02 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.02 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.01 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 97.99 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.95 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 97.94 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 97.93 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.86 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.84 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.8 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.74 | |
| KOG4174 | 282 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.65 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 97.64 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 97.63 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 97.62 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.62 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.61 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 97.59 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 97.57 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 97.53 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.53 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.53 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 97.51 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 97.46 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.45 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 97.44 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 97.43 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.42 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.41 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.34 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.32 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.29 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 97.24 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 97.15 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.15 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 97.1 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 97.08 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.03 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.0 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 96.91 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 96.89 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 96.88 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 96.88 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 96.87 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.86 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 96.85 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 96.84 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 96.79 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 96.76 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.75 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 96.74 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.74 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 96.69 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 96.64 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 96.63 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 96.53 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 96.49 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.48 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 96.39 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 96.37 | |
| PLN02366 | 308 | spermidine synthase | 96.36 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 96.28 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 96.26 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 96.25 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.24 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 96.21 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 96.21 | |
| PRK04266 | 226 | fibrillarin; Provisional | 96.2 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 96.19 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 96.09 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 96.08 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 96.06 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 96.04 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 95.96 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 95.89 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 95.88 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 95.87 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 95.72 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 95.54 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 95.47 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 95.45 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 95.39 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 95.36 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 95.34 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 95.31 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 95.26 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 95.25 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 95.25 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.23 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 95.14 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.12 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 95.05 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 95.05 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 94.96 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.79 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 94.74 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 94.72 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 94.6 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 94.59 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 94.56 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 94.56 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 94.48 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 94.46 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 94.42 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 94.36 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 94.28 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 94.16 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 93.89 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 93.87 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 93.85 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 93.83 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 93.73 | |
| PLN02823 | 336 | spermine synthase | 93.55 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.54 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 93.44 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.38 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 93.35 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 93.33 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 93.27 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 93.24 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 93.21 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 93.19 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 93.15 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 93.06 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 92.89 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 92.7 | |
| PLN02476 | 278 | O-methyltransferase | 92.47 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 92.36 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 92.34 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 92.11 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 92.08 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 91.97 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 91.89 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 91.47 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 91.34 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 91.31 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 90.86 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 90.76 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 90.76 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 90.72 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 90.59 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 90.26 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 90.23 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 90.04 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 89.9 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 89.82 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 89.76 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 89.68 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 88.99 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 88.78 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 88.68 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 87.71 | |
| PRK13699 | 227 | putative methylase; Provisional | 87.58 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 86.95 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 86.69 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 86.65 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 86.58 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 86.55 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 85.9 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 85.05 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 84.7 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 84.38 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 83.28 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 82.53 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 82.06 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 81.48 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 81.02 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 80.27 |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-65 Score=420.90 Aligned_cols=166 Identities=49% Similarity=0.809 Sum_probs=158.3
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|+|||||||||+|||++++++.+|+|||+||++++.+|||++.+||++|++.|+.|+||||||+|+++..+..++||+||
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 79999999999999999988899999999999999999999999999999999999999999999999878899999999
Q ss_pred EcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEecCCCCC
Q 041136 103 FNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQD 182 (214)
Q Consensus 103 FNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~~F~~~~ 182 (214)
|||||+|. +.++++++ |++||+||.+||+||+++|+++|+|||||++|+||+.|||+++|+++||+|.++++|++++
T Consensus 81 FNFPH~G~--~~~~~~~~-i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~~ 157 (166)
T PF10354_consen 81 FNFPHVGG--GSEDGKRN-IRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPSD 157 (166)
T ss_pred EeCCCCCC--CccchhHH-HHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHHH
Confidence 99999995 34555544 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccC
Q 041136 183 FPGYHNKRG 191 (214)
Q Consensus 183 yPgY~~~rt 191 (214)
||||.|+||
T Consensus 158 ypgY~~~rT 166 (166)
T PF10354_consen 158 YPGYEHKRT 166 (166)
T ss_pred CCCcccCCC
Confidence 999999987
|
|
| >KOG4174 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=391.76 Aligned_cols=207 Identities=42% Similarity=0.739 Sum_probs=193.6
Q ss_pred ccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhC-CCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEc
Q 041136 4 KKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFG-SATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHG 81 (214)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~-~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~ 81 (214)
+-....++|+.||++..+||+|||||||||+||+.+++ ++.||+|||+|+.+ ++.+|||++.+|+++|+.+|+.|+|+
T Consensus 42 ~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~ 121 (282)
T KOG4174|consen 42 RMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHG 121 (282)
T ss_pred hhccCceeeeeeccccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEec
Confidence 44567889999999999999999999999999999999 78999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccC-CCCEEEEEecCCCCCCccc
Q 041136 82 VNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLG-EGGEVHVTLRDDHPYNQWN 160 (214)
Q Consensus 82 VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~-~~G~i~VTl~~~~Py~~W~ 160 (214)
||||.|+.++.+..++||+|||||||.|...+ .+++++.|-.||+|+.+||++|+++|+ +.|+|||||++++||+.||
T Consensus 122 Vdv~sl~~~~~~~~~~~d~IiFNFPH~G~g~~-~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ 200 (282)
T KOG4174|consen 122 VDVTSLKFHADLRLQRYDNIIFNFPHSGKGIK-FEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWN 200 (282)
T ss_pred ccceeEEecccccccccceEEEcCCCCCCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhh
Confidence 99999999999999999999999999998654 577777777899999999999999999 8999999999999999999
Q ss_pred HhhHHHhcCCEEEEEecCCCCCCCCCccccCCCcccCccccCCc--cEEEEEE
Q 041136 161 VMGLADKLGLVLKEKVEFLKQDFPGYHNKRGGGVKSNKKFPLKE--CFTFKFC 211 (214)
Q Consensus 161 i~~lA~~~gl~l~~~~~F~~~~yPgY~~~rt~~~~~~~~f~~~~--~~t~~F~ 211 (214)
|..||++.||.|.+...|+++.||||.|||++|..|+.++.... +++|.|.
T Consensus 201 ik~Lak~~gl~L~~~skF~~~~~Pgy~~Kr~~gs~cd~p~l~~~~d~~~y~f~ 253 (282)
T KOG4174|consen 201 IKFLAKEFGLTLLEDSKFEKSNYPGYSNKRGDGSRCDSPLLVHERDAIEYHFL 253 (282)
T ss_pred hhHhhhhccccchhcccchhhcCCCcccccCCCcccCCccccccccceEEEEE
Confidence 99999999999999999999999999999999999999987755 5566654
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=72.25 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=72.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|=|.=-.|.+|++... +...++.|..+... ..++.|++.+.-.++.++. -|.- + .+...+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~---~~~v~~vDi~~~a~---~~a~~n~~~n~~~~v~~~~-~d~~---~--~~~~~~ 98 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGP---DAKVTAVDINPDAL---ELAKRNAERNGLENVEVVQ-SDLF---E--ALPDGK 98 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTST---CEEEEEEESBHHHH---HHHHHHHHHTTCTTEEEEE-SSTT---T--TCCTTC
T ss_pred cCCeEEEecCChHHHHHHHHHhCC---CCEEEEEcCCHHHH---HHHHHHHHhcCcccccccc-cccc---c--cccccc
Confidence 678899999776555666777653 44455556555444 2577888877654544433 3332 1 234688
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
||.||+|.|...+. .....++..|++.|..+|+++|++++....
T Consensus 99 fD~Iv~NPP~~~~~-----------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 99 FDLIVSNPPFHAGG-----------DDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EEEEEE---SBTTS-----------HCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred eeEEEEccchhccc-----------ccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 99999999965442 124668999999999999999999765443
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.8e-06 Score=71.26 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=101.9
Q ss_pred cccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 12 WISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 12 ~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
|+.+-+ ..+||=+|-|+=--++.||+.... ..|++.-+| +++. .-|.+|++...-..-.-++.-|..++.+.
T Consensus 39 ~~~~~~-~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq--~~~a---~~A~~nv~ln~l~~ri~v~~~Di~~~~~~- 110 (248)
T COG4123 39 FAPVPK-KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQ--EEAA---EMAQRNVALNPLEERIQVIEADIKEFLKA- 110 (248)
T ss_pred hccccc-CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeC--HHHH---HHHHHHHHhCcchhceeEehhhHHHhhhc-
Confidence 344444 899999998887777778887642 456665554 4444 24888888743233445567788888775
Q ss_pred CCCCCcccEEEEcCCCCCCCCC-CCcccHHHHHHhH--HHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhc
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPP-LSEQDTNLIKRHK--NLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKL 168 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~-~~~~~~~~i~~n~--~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~ 168 (214)
....+||.||.|.|+.-.... -.++.+. +..+. -.+.++++.|+.+|+++|.+.+.+ .|-..-.|.++++..
T Consensus 111 -~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~-~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---r~erl~ei~~~l~~~ 185 (248)
T COG4123 111 -LVFASFDLIICNPPYFKQGSRLNENPLRA-IARHEITLDLEDLIRAAAKLLKPGGRLAFVH---RPERLAEIIELLKSY 185 (248)
T ss_pred -ccccccCEEEeCCCCCCCccccCcChhhh-hhhhhhcCCHHHHHHHHHHHccCCCEEEEEe---cHHHHHHHHHHHHhc
Confidence 333479999999999965322 1111111 12222 238999999999999999996663 345677788888888
Q ss_pred CCEEEEE
Q 041136 169 GLVLKEK 175 (214)
Q Consensus 169 gl~l~~~ 175 (214)
++.+.+.
T Consensus 186 ~~~~k~i 192 (248)
T COG4123 186 NLEPKRI 192 (248)
T ss_pred CCCceEE
Confidence 8877663
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.7e-06 Score=63.44 Aligned_cols=114 Identities=21% Similarity=0.208 Sum_probs=73.0
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+||-+|=|.=+|+.++++.. ..++++.-+|...-- -++.|+..+...+-.-++.-|++++.+ .+...+||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~-----~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~~~~~D 72 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVE-----LARRNLPRNGLDDRVEVIVGDARDLPE--PLPDGKFD 72 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHH-----HHHHHCHHCTTTTTEEEEESHHHHHHH--TCTTT-EE
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHH-----HHHHHHHHccCCceEEEEECchhhchh--hccCceeE
Confidence 478888755555665577664 346666655554321 255566665433346677778888753 25668899
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||+|.|...... . .....++...|++.+.++|+++|.+.+.+
T Consensus 73 ~Iv~npP~~~~~~-~-------~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 73 LIVTNPPYGPRSG-D-------KAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp EEEE--STTSBTT------------GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCCccccc-c-------chhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999999986421 1 12334588899999999999999997764
|
... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.1e-06 Score=70.03 Aligned_cols=141 Identities=13% Similarity=0.151 Sum_probs=90.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++..+||-+|-|+=.|+.+||+.+. ..++ ++.|...++.+ .+.+++....-.++ -+...|+.++... .+...
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v--~gvD~~~~~l~---~a~~~~~~~~l~ni-~~i~~d~~~~~~~-~~~~~ 86 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNF--LGIEIHTPIVL---AANNKANKLGLKNL-HVLCGDANELLDK-FFPDG 86 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCC-CCCE--EEEEeeHHHHH---HHHHHHHHhCCCCE-EEEccCHHHHHHh-hCCCC
Confidence 4667899999777777777888763 3344 56665554442 35566655432234 4455688765321 13345
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
.+|.|+.|||..-.+. .. ..++.+...|++.+..+|++||.++++.- ...|..|-+..+....++....
T Consensus 87 ~~d~v~~~~pdpw~k~---~h-----~~~r~~~~~~l~~~~r~LkpgG~l~~~td-~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 87 SLSKVFLNFPDPWPKK---RH-----NKRRITQPHFLKEYANVLKKGGVIHFKTD-NEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred ceeEEEEECCCcCCCC---Cc-----cccccCCHHHHHHHHHHhCCCCEEEEEeC-CHHHHHHHHHHHHhCCCeEecc
Confidence 7999999998653321 00 12344568899999999999999987743 3446777777777766677654
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00032 Score=57.46 Aligned_cols=140 Identities=20% Similarity=0.169 Sum_probs=84.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+.++||-+|=|.=.++.++++.. . ..++.|-.++..+ .+.+|++... ..+.+ ...|+.+.. ..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~---~--~v~~vD~s~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~------~~ 81 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKG---K--CILTTDINPFAVK---ELRENAKLNN-VGLDV-VMTDLFKGV------RG 81 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcC---C--EEEEEECCHHHHH---HHHHHHHHcC-CceEE-EEccccccc------CC
Confidence 345789999977766777777753 1 4555665454442 4666776432 22333 345554421 24
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHH-----HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLI-----KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLV 171 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i-----~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~ 171 (214)
+||.|+.|.|+..........+.... .....++..|+..+.++|+++|.+.+...... +.=.+..+.++.|+.
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~~~~~~~~l~~~gf~ 159 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--GEPDTFDKLDERGFR 159 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--ChHHHHHHHHhCCCe
Confidence 79999999998744211111000000 12356789999999999999999877632211 234566777888887
Q ss_pred EEE
Q 041136 172 LKE 174 (214)
Q Consensus 172 l~~ 174 (214)
+..
T Consensus 160 ~~~ 162 (179)
T TIGR00537 160 YEI 162 (179)
T ss_pred EEE
Confidence 765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0001 Score=64.65 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=100.4
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-.-....-.++++||=+|=|-=.+|..|+...+... ..++.|..+... ..+.+|++.+.-.+ ..+..-
T Consensus 56 qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g--~v~a~D~~~~~l---~~~~~n~~~~g~~~-v~~~~~ 129 (264)
T TIGR00446 56 QEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEG--AIVANEFSKSRT---KVLIANINRCGVLN-VAVTNF 129 (264)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCC--EEEEEcCCHHHH---HHHHHHHHHcCCCc-EEEecC
Confidence 444444443444446788999999666666666888775333 356667655544 24677777664323 345666
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY 156 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py 156 (214)
|++.+.. ....||+|+.|-|+.|.+.-..+. ....+.....+....+.+|..+|++||.+..+-|.-.|-
T Consensus 130 D~~~~~~----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~ 205 (264)
T TIGR00446 130 DGRVFGA----AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPE 205 (264)
T ss_pred CHHHhhh----hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChH
Confidence 7776543 124599999999999864211111 112233345567789999999999999998777775553
Q ss_pred -CcccHhhHHHhc-CCEE
Q 041136 157 -NQWNVMGLADKL-GLVL 172 (214)
Q Consensus 157 -~~W~i~~lA~~~-gl~l 172 (214)
+...|..+.+++ ++.+
T Consensus 206 Ene~vv~~~l~~~~~~~~ 223 (264)
T TIGR00446 206 ENEAVVDYLLEKRPDVVE 223 (264)
T ss_pred HHHHHHHHHHHhCCCcEE
Confidence 566777655543 5543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.7e-05 Score=70.69 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=83.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC---CEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG---CLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g---~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+||=+|=|+=-.+..|++... . .-.|..|..+...+ .+++|++.....+ +.++.+ |+ -. .+.
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P-~--~~V~~vD~S~~Av~---~A~~N~~~n~~~~~~~v~~~~~-D~---l~--~~~ 295 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNP-Q--AKVVFVDESPMAVA---SSRLNVETNMPEALDRCEFMIN-NA---LS--GVE 295 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCC-C--CEEEEEECCHHHHH---HHHHHHHHcCcccCceEEEEEc-cc---cc--cCC
Confidence 346899998666555666887763 2 34555664443331 4777886654221 233321 22 11 233
Q ss_pred CCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc------cHhhHHHh
Q 041136 95 QMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW------NVMGLADK 167 (214)
Q Consensus 95 ~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W------~i~~lA~~ 167 (214)
..+||.|+.|+| |.|... ...+...+|+.|.++|++||+++|......||..+ ++..+|+.
T Consensus 296 ~~~fDlIlsNPPfh~~~~~------------~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg~~~~va~~ 363 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHAL------------TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATN 363 (378)
T ss_pred CCCEEEEEECcCcccCccC------------CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcCCceEEccC
Confidence 457999999999 445311 22356789999999999999998776554555422 34446667
Q ss_pred cCCEEEEEec
Q 041136 168 LGLVLKEKVE 177 (214)
Q Consensus 168 ~gl~l~~~~~ 177 (214)
.+|.+.++.+
T Consensus 364 ~kf~vl~a~k 373 (378)
T PRK15001 364 NKFVVLKAVK 373 (378)
T ss_pred CCEEEEEEEe
Confidence 7777766543
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.2e-05 Score=69.32 Aligned_cols=115 Identities=24% Similarity=0.297 Sum_probs=77.5
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-+|=|.=.++..|++... .+..|+.|......+ .+++|++... ..+.+ +..|+.. . . .++|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p---~~~v~~vDis~~Al~---~A~~nl~~n~-l~~~~-~~~D~~~---~--~-~~~f 262 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSP---KIRLTLSDVSAAALE---SSRATLAANG-LEGEV-FASNVFS---D--I-KGRF 262 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCC---CCEEEEEECCHHHHH---HHHHHHHHcC-CCCEE-EEccccc---c--c-CCCc
Confidence 45899999777777877888753 234556665444432 4666776643 22333 3334432 1 2 4679
Q ss_pred cEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc
Q 041136 99 DVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW 159 (214)
Q Consensus 99 D~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W 159 (214)
|.||.|+|.. |.. .+......|++.|..+|++||+++|....--||..|
T Consensus 263 DlIvsNPPFH~g~~------------~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~ 312 (342)
T PRK09489 263 DMIISNPPFHDGIQ------------TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDL 312 (342)
T ss_pred cEEEECCCccCCcc------------ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHH
Confidence 9999999965 431 234578899999999999999998887776777644
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=68.49 Aligned_cols=153 Identities=15% Similarity=0.123 Sum_probs=97.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-.++++||=+|-|-=.++..|++..+... ..++.|..+... ..+++|++.+.-.+ ..+..-|++++.....+.
T Consensus 249 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g--~v~a~D~~~~rl---~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 249 DPQPGEVILDACAAPGGKTTHIAELMGDQG--EIWAVDRSASRL---KKLQENAQRLGLKS-IKILAADSRNLLELKPQW 322 (434)
T ss_pred CCCCcCEEEEeCCCCchhHHHHHHHhCCCc--eEEEEcCCHHHH---HHHHHHHHHcCCCe-EEEEeCChhhcccccccc
Confidence 345678999998776667777888765433 445667555443 24667776653223 355667888875322123
Q ss_pred CCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHHHh
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLADK 167 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA~~ 167 (214)
...||+|+-|-|+.|.+.-.... ....+.....|....+.+|..+|++||.+..+-|.-.|- +.-+|....++
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 46799999999998753211111 112233345567899999999999999998887776653 45566665554
Q ss_pred c-CCEEE
Q 041136 168 L-GLVLK 173 (214)
Q Consensus 168 ~-gl~l~ 173 (214)
+ ++.+.
T Consensus 403 ~~~~~~~ 409 (434)
T PRK14901 403 HPDWKLE 409 (434)
T ss_pred CCCcEec
Confidence 4 66654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=65.47 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=89.4
Q ss_pred CCCCCeEEEE--ecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 16 YTNNQRILLV--GEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 16 ~~~~~~ILlV--GeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..++++||-+ |.|.+... .+. . +..+ ++.|....+.+ .+..|++...-.+ ..+..-|++++..
T Consensus 180 ~~~g~~vLDp~cGtG~~lie--aa~-~--~~~v--~g~Di~~~~~~---~a~~nl~~~g~~~-i~~~~~D~~~l~~---- 244 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIE--AGL-M--GAKV--IGCDIDWKMVA---GARINLEHYGIED-FFVKRGDATKLPL---- 244 (329)
T ss_pred CCCcCEEEECCCCCCHHHHH--HHH-h--CCeE--EEEcCCHHHHH---HHHHHHHHhCCCC-CeEEecchhcCCc----
Confidence 5677889875 56665544 332 2 2344 45575555442 4677876654334 3456678888743
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
....||.||.|.|--.. .+... .....+...++..+.++|++||.+.+.+.+.. ++..+++.+|+ +.
T Consensus 245 ~~~~~D~Iv~dPPyg~~-~~~~~------~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 245 SSESVDAIATDPPYGRS-TTAAG------DGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----DLESLAEDAFR-VV 311 (329)
T ss_pred ccCCCCEEEECCCCcCc-ccccC------CchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----CHHHHHhhcCc-ch
Confidence 35689999999996322 11111 11346789999999999999999877754422 34578999999 66
Q ss_pred EEecCCCCCCCCCccc
Q 041136 174 EKVEFLKQDFPGYHNK 189 (214)
Q Consensus 174 ~~~~F~~~~yPgY~~~ 189 (214)
. .|+-|.|+
T Consensus 312 ~-------~~~~~~h~ 320 (329)
T TIGR01177 312 K-------RFEVRVHR 320 (329)
T ss_pred h-------eeeeeeec
Confidence 6 57777764
|
This family is found exclusively in the Archaea. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00022 Score=66.91 Aligned_cols=163 Identities=13% Similarity=0.096 Sum_probs=98.6
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-......-.++++||=+|-|.=+++..+++..+... ..|+.|..++.. ..+++|++.+.-.+ ..+..-
T Consensus 235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~--~v~avDi~~~~l---~~~~~n~~~~g~~~-v~~~~~ 308 (444)
T PRK14902 235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTG--KVVALDIHEHKL---KLIEENAKRLGLTN-IETKAL 308 (444)
T ss_pred EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCC--EEEEEeCCHHHH---HHHHHHHHHcCCCe-EEEEeC
Confidence 444444333333346678999999777777777988875433 455566544433 24667776553223 344556
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCc------ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSE------QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY 156 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~------~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py 156 (214)
|++++... +. ..||+|+.|.|+.|.+.-... .....+..-..+-..++..|..+|++||.+..+-|.-.|-
T Consensus 309 D~~~~~~~--~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 385 (444)
T PRK14902 309 DARKVHEK--FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE 385 (444)
T ss_pred Ccccccch--hc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh
Confidence 88776431 22 679999999998875321000 1111222234456789999999999999998776665442
Q ss_pred -CcccHhhHHHhc-CCEEEE
Q 041136 157 -NQWNVMGLADKL-GLVLKE 174 (214)
Q Consensus 157 -~~W~i~~lA~~~-gl~l~~ 174 (214)
+...+....+++ ++.+..
T Consensus 386 Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 386 ENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred hhHHHHHHHHHhCCCcEEec
Confidence 455566555544 466544
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00017 Score=67.45 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=98.7
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
||.+.+-.-....-.++++||-+|-|-=+.+..+++..+. ...+++|..+...+ .+++|++.+.- ++ .+...
T Consensus 229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~---~~~~n~~~~g~-~~-~~~~~ 300 (427)
T PRK10901 229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLE---RVRENLQRLGL-KA-TVIVG 300 (427)
T ss_pred ECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHH---HHHHHHHHcCC-Ce-EEEEc
Confidence 4444333333333457889999986555556668877632 34566675554432 46667765432 23 34566
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCc------ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSE------QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP- 155 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~------~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P- 155 (214)
|++++... +...+||.|+.|-|..|.+.-... .+...+.....+...++..|..+|++||.+.++-|.-.|
T Consensus 301 D~~~~~~~--~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~ 378 (427)
T PRK10901 301 DARDPAQW--WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE 378 (427)
T ss_pred Ccccchhh--cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh
Confidence 88876432 335679999999999874311000 111223334567789999999999999999888775444
Q ss_pred CCcccHhhHHHh-cCCEEEE
Q 041136 156 YNQWNVMGLADK-LGLVLKE 174 (214)
Q Consensus 156 y~~W~i~~lA~~-~gl~l~~ 174 (214)
-+..+|....++ .++.+..
T Consensus 379 Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 379 ENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred hCHHHHHHHHHhCCCCEEec
Confidence 355566665544 4676544
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00019 Score=64.75 Aligned_cols=138 Identities=20% Similarity=0.201 Sum_probs=96.4
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.|.....+||=||=|.==-+..|++..+ ..-.|-.|-. ..+. .|+.|+....-.+..|+.+-....+
T Consensus 154 l~~~~~~~vlDlGCG~Gvlg~~la~~~p---~~~vtmvDvn~~Av~----~ar~Nl~~N~~~~~~v~~s~~~~~v----- 221 (300)
T COG2813 154 LPPDLGGKVLDLGCGYGVLGLVLAKKSP---QAKLTLVDVNARAVE----SARKNLAANGVENTEVWASNLYEPV----- 221 (300)
T ss_pred CCccCCCcEEEeCCCccHHHHHHHHhCC---CCeEEEEecCHHHHH----HHHHhHHHcCCCccEEEEecccccc-----
Confidence 3555566899999777666667888764 4556666633 3343 5788888876555556665444433
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-----c-ccHhhHHH
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-----Q-WNVMGLAD 166 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-----~-W~i~~lA~ 166 (214)
.. +||.||.|.|..-++ .....+-..+|+.|...|++||+++|-.....||. . =+++.+|+
T Consensus 222 -~~-kfd~IisNPPfh~G~-----------~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg~v~~la~ 288 (300)
T COG2813 222 -EG-KFDLIISNPPFHAGK-----------AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFGNVEVLAK 288 (300)
T ss_pred -cc-cccEEEeCCCccCCc-----------chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcCCEEEEEe
Confidence 23 899999999988553 23466888999999999999999988877555653 1 24677788
Q ss_pred hcCCEEEEEe
Q 041136 167 KLGLVLKEKV 176 (214)
Q Consensus 167 ~~gl~l~~~~ 176 (214)
..||.+.++.
T Consensus 289 ~~gf~Vl~a~ 298 (300)
T COG2813 289 NGGFKVLRAK 298 (300)
T ss_pred CCCEEEEEEe
Confidence 8888776643
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0012 Score=53.50 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=83.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+..+||.+|=|+=.++..|++. +.+++++-++ ++.. ..+++|+......+ +.++ ..|+.+ .+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s--~~~~---~~a~~~~~~~~~~~~~~~~~-~~d~~~-----~~~ 87 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDIN--PYAV---ECAKCNAKLNNIRNNGVEVI-RSDLFE-----PFR 87 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh---cceEEEEECC--HHHH---HHHHHHHHHcCCCCcceEEE-eccccc-----ccc
Confidence 56789999996665666667776 3466665444 3333 13556665433222 4433 334432 133
Q ss_pred CCcccEEEEcCCCCCCCCCCCccc--HHHH----HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhc
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQD--TNLI----KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKL 168 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~--~~~i----~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~ 168 (214)
...||.|++|.|...... ...-. .+.. ......+..|++.+..+|+++|.+.+.+.... ..=.+..+..+.
T Consensus 88 ~~~~d~vi~n~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~--~~~~l~~~~~~~ 164 (188)
T PRK14968 88 GDKFDVILFNPPYLPTEE-EEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT--GEDEVLEYLEKL 164 (188)
T ss_pred ccCceEEEECCCcCCCCc-hhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC--CHHHHHHHHHHC
Confidence 447999999999864321 10000 0000 01256788999999999999999877754321 112355677788
Q ss_pred CCEEEE
Q 041136 169 GLVLKE 174 (214)
Q Consensus 169 gl~l~~ 174 (214)
|+....
T Consensus 165 g~~~~~ 170 (188)
T PRK14968 165 GFEAEV 170 (188)
T ss_pred CCeeee
Confidence 987654
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00058 Score=60.70 Aligned_cols=137 Identities=15% Similarity=0.182 Sum_probs=84.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|-|.=.++.+|++... +..+|+.|..++..+ .+..|++.+.-.+..-++.-|+.+ .+...+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~---~~~v~avDis~~al~---~A~~n~~~~~~~~~i~~~~~D~~~-----~~~~~~ 189 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFP---EAEVDAVDISPDALA---VAEINIERHGLEDRVTLIQSDLFA-----ALPGRK 189 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCC---CCEEEEEECCHHHHH---HHHHHHHHcCCCCcEEEEECchhh-----ccCCCC
Confidence 357899999888888888998763 344566675444432 477777655321212233445532 123457
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHH
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLAD 166 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~ 166 (214)
||.||.|.|-+.... ......+ ++ ...+++..++..|.++|++||.+.+.+-. +.=.+..+..
T Consensus 190 fD~Iv~NPPy~~~~~-~~~l~~~-~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~----~~~~v~~~~~ 263 (284)
T TIGR03533 190 YDLIVSNPPYVDAED-MADLPAE-YHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN----SMEALEEAYP 263 (284)
T ss_pred ccEEEECCCCCCccc-hhhCCHh-hhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----CHHHHHHHHH
Confidence 999999999875432 1111001 11 12356789999999999999999877542 2124666666
Q ss_pred hcCCE
Q 041136 167 KLGLV 171 (214)
Q Consensus 167 ~~gl~ 171 (214)
.+|+.
T Consensus 264 ~~~~~ 268 (284)
T TIGR03533 264 DVPFT 268 (284)
T ss_pred hCCCc
Confidence 66643
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0013 Score=55.95 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=83.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||-+|-|.=.++..+++. + ..++ |+.|..++..+ .+.+|++... ..+. ++.-|+.+. +..
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v--~~vD~s~~~l~---~a~~n~~~~~-~~~~-~~~~d~~~~-----~~~ 99 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSV--TAVDISRRAVR---SARLNALLAG-VDVD-VRRGDWARA-----VEF 99 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-C-CCeE--EEEECCHHHHH---HHHHHHHHhC-CeeE-EEECchhhh-----ccC
Confidence 456789999997765566667664 2 2345 45554333331 3566665442 1233 333455432 334
Q ss_pred CcccEEEEcCCCCCCCC-CCCcccHHHH----HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCC
Q 041136 96 MKFDVIIFNFPHAGHSP-PLSEQDTNLI----KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGL 170 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~-~~~~~~~~~i----~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl 170 (214)
..||.||.|.|+..... +..+...... .....++..|++.|..+|+++|.+.+...+-. +.-++..+.++.|+
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~--~~~~~~~~l~~~g~ 177 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS--GVERTLTRLSEAGL 177 (223)
T ss_pred CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc--CHHHHHHHHHHCCC
Confidence 68999999998764311 0011110000 11345789999999999999999987654422 22356677778887
Q ss_pred EEEE
Q 041136 171 VLKE 174 (214)
Q Consensus 171 ~l~~ 174 (214)
.+..
T Consensus 178 ~~~~ 181 (223)
T PRK14967 178 DAEV 181 (223)
T ss_pred CeEE
Confidence 5544
|
|
| >KOG4174 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.6e-06 Score=73.45 Aligned_cols=124 Identities=21% Similarity=0.189 Sum_probs=99.6
Q ss_pred hhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCC
Q 041136 30 FSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAG 109 (214)
Q Consensus 30 FSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G 109 (214)
|+|++++-..+....+++||++.+..++. .-|.+.+|++-++..|..+.+.++.++.++--.+..+-|+-+.+=+||.|
T Consensus 1 ~g~~ar~ke~~~l~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~g~~~~~v~~~s~~~~ill~gEgdFSfs~sl~~~~g 79 (282)
T KOG4174|consen 1 FGFAARLKETLDLSTQLTATCLQRPAELA-RDPLAWENLQNLRMDGIEERFVVPYSKKQKILLVGEGDFSFSLSLAPHFG 79 (282)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcchhhhc-cChhhHHHHhhhhhccCceeeeeeccccccEEEecccchhhHHHHHHHhC
Confidence 67888887766556799999999988775 34778999999999999999999999988765556788999999999999
Q ss_pred CCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEec
Q 041136 110 HSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 110 ~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
.+.+ | -.+..|...+| -|...+|-..|||+.|++-.|.++.+.-+
T Consensus 80 ~sa~------n--i~atSlDsk~~---------------dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv 124 (282)
T KOG4174|consen 80 RSAG------N--ITATSLDSKEF---------------DLKQKYPDAKENVEALKRLGGTILHGVDV 124 (282)
T ss_pred cccc------c--eeeeeccchhh---------------hhhhcccchHHHHHHHHHcCCceEecccc
Confidence 6543 1 23566766666 45566788899999999999999877433
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00045 Score=63.43 Aligned_cols=137 Identities=19% Similarity=0.297 Sum_probs=95.7
Q ss_pred CCCeEE--EEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRIL--LVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~IL--lVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+..|| .+|.|.|=.-++| . +.+++.+ |-...+.+ .+..|++...-.+..++-..||++|. |..
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl---~--G~~viG~--Did~~mv~---gak~Nl~~y~i~~~~~~~~~Da~~lp----l~~ 262 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGL---M--GARVIGS--DIDERMVR---GAKINLEYYGIEDYPVLKVLDATNLP----LRD 262 (347)
T ss_pred cCCEeecCcCCccHHHHhhhh---c--CceEeec--chHHHHHh---hhhhhhhhhCcCceeEEEecccccCC----CCC
Confidence 344454 5888988333222 2 3466666 76666653 58899999875566666666999986 666
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.+||-|+-+.|= |..+..... .--+|+.+||++++.+|+++|.+... .|.+. ...+.+.|+.+..
T Consensus 263 ~~vdaIatDPPY-Grst~~~~~------~l~~Ly~~~le~~~evLk~gG~~vf~----~p~~~---~~~~~~~~f~v~~- 327 (347)
T COG1041 263 NSVDAIATDPPY-GRSTKIKGE------GLDELYEEALESASEVLKPGGRIVFA----APRDP---RHELEELGFKVLG- 327 (347)
T ss_pred CccceEEecCCC-Ccccccccc------cHHHHHHHHHHHHHHHhhcCcEEEEe----cCCcc---hhhHhhcCceEEE-
Confidence 689999999985 443221111 12579999999999999999999777 45333 3567788999988
Q ss_pred ecCCCCCCCCCccc
Q 041136 176 VEFLKQDFPGYHNK 189 (214)
Q Consensus 176 ~~F~~~~yPgY~~~ 189 (214)
.|+-|.|+
T Consensus 328 ------~~~~~~H~ 335 (347)
T COG1041 328 ------RFTMRVHG 335 (347)
T ss_pred ------EEEEeecC
Confidence 57777764
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=62.57 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=95.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.++++||-+|-|-=.+|..|++..+... ..++.|..++..+ .+.+|++.+.-. ...+..-|+.++. ..
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~--~V~avD~s~~~l~---~~~~~~~~~g~~-~v~~~~~Da~~~~-----~~ 316 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRG--QITAVDRYPQKLE---KIRSHASALGIT-IIETIEGDARSFS-----PE 316 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCc--EEEEEECCHHHHH---HHHHHHHHhCCC-eEEEEeCcccccc-----cC
Confidence 45678999999765556666888765333 5567786555442 466677655321 2345566777653 23
Q ss_pred CcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-CCcccHhhHHHhc
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-YNQWNVMGLADKL 168 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-y~~W~i~~lA~~~ 168 (214)
..||+|+.+-|+.|.+.-.... +.+.+.....+-..++.+|..+|++||.+.+.-|.-.| -+..+|....+++
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 5799999999999864211110 11223333456678999999999999999888887655 3577787766554
Q ss_pred -CCEEEE
Q 041136 169 -GLVLKE 174 (214)
Q Consensus 169 -gl~l~~ 174 (214)
++.+..
T Consensus 397 ~~~~~~~ 403 (445)
T PRK14904 397 PEFSAEP 403 (445)
T ss_pred CCCEEec
Confidence 566543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0019 Score=54.21 Aligned_cols=128 Identities=19% Similarity=0.127 Sum_probs=87.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-+|-|.=.+|..+++... ....|+.|..++..+ .+.+|++.+.-.++. +..-|+.++. . ..
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~---~~~V~giD~s~~~l~---~A~~~~~~~~l~~i~-~~~~d~~~~~----~-~~ 111 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP---ELKVTLVDSLGKKIA---FLREVAAELGLKNVT-VVHGRAEEFG----Q-EE 111 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC---CCeEEEEeCcHHHHH---HHHHHHHHcCCCCEE-EEeccHhhCC----C-CC
Confidence 3478999999555555555776553 345677787666552 467777776543443 4455777653 2 56
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
+||.|+.|. .+ -+..|++.+.++|++||.+.+-... -..+.+..++.-+|+.+....
T Consensus 112 ~fDlV~~~~--~~------------------~~~~~l~~~~~~LkpGG~lv~~~~~---~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 112 KFDVVTSRA--VA------------------SLSDLVELCLPLLKPGGRFLALKGR---DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred CccEEEEcc--cc------------------CHHHHHHHHHHhcCCCeEEEEEeCC---ChHHHHHHHHHhcCceEeeeE
Confidence 899999862 11 1457889999999999999777433 356678888899999988866
Q ss_pred cCC
Q 041136 177 EFL 179 (214)
Q Consensus 177 ~F~ 179 (214)
...
T Consensus 169 ~~~ 171 (187)
T PRK00107 169 ELT 171 (187)
T ss_pred EEe
Confidence 554
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=61.30 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=98.6
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-...+..-.++.+||=+|=|-=..|..++...+....|+ +.|..+.-. ..+.+|++.+.-.. ..+...
T Consensus 222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~--a~Dis~~rl---~~~~~n~~r~g~~~-v~~~~~ 295 (431)
T PRK14903 222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKIL--AVDISREKI---QLVEKHAKRLKLSS-IEIKIA 295 (431)
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEE--EEECCHHHH---HHHHHHHHHcCCCe-EEEEEC
Confidence 444444333334456778999888444444444777765444454 456444332 24667776553222 345567
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP- 155 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P- 155 (214)
|++++.. +...+||+|+-|-|+.|.+.-.... ..+.+.....+-...+.+|..+|++||.+..+-|.-.|
T Consensus 296 Da~~l~~---~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 372 (431)
T PRK14903 296 DAERLTE---YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE 372 (431)
T ss_pred chhhhhh---hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence 8887643 2345799999999998874311111 11122333445678899999999999999888887655
Q ss_pred CCcccHhhHHH-hcCCEEEE
Q 041136 156 YNQWNVMGLAD-KLGLVLKE 174 (214)
Q Consensus 156 y~~W~i~~lA~-~~gl~l~~ 174 (214)
-+..+|....+ +.++.+..
T Consensus 373 Ene~vv~~fl~~~~~~~~~~ 392 (431)
T PRK14903 373 ENTEVVKRFVYEQKDAEVID 392 (431)
T ss_pred hCHHHHHHHHHhCCCcEEec
Confidence 46677776544 55776544
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=56.42 Aligned_cols=144 Identities=14% Similarity=0.123 Sum_probs=86.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.+..+||-+|-|.=.++.+|++... ... .++.|..+...+ .+.+|++.....++.+ ...|+... +..
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~-~~~--v~~iDis~~~l~---~a~~n~~~~~~~~i~~-~~~d~~~~-----~~~ 173 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERP-DAE--VTAVDISPEALA---VARRNAKHGLGARVEF-LQGDWFEP-----LPG 173 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCC-CCE--EEEEECCHHHHH---HHHHHHHhCCCCcEEE-EEccccCc-----CCC
Confidence 34667899999887778888988873 234 455564444331 4677776111123333 34455321 224
Q ss_pred CcccEEEEcCCCCCCCCCC-CcccHHH------H---HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 96 MKFDVIIFNFPHAGHSPPL-SEQDTNL------I---KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~-~~~~~~~------i---~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
.+||.||.|+|........ ...+... + ....+++..+++.|..+|++||.+.+.+-. ...-.+..+.
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---~~~~~~~~~l 250 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---DQGEAVRALL 250 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---hHHHHHHHHH
Confidence 6899999999988642100 0011000 0 012356788999999999999999886422 2233477777
Q ss_pred HhcCCEEEE
Q 041136 166 DKLGLVLKE 174 (214)
Q Consensus 166 ~~~gl~l~~ 174 (214)
...|+.-..
T Consensus 251 ~~~gf~~v~ 259 (275)
T PRK09328 251 AAAGFADVE 259 (275)
T ss_pred HhCCCceeE
Confidence 788886444
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00019 Score=60.48 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=82.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc-ccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV-HTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA-t~L~~~~~~~~~ 96 (214)
+..+||-+|=|.=.++..|++... ..++ ++.|..++..+ .+.++++...-.++. ++.-|+ ..+... +...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v--~gVD~s~~~i~---~a~~~~~~~~~~~v~-~~~~d~~~~l~~~--~~~~ 110 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINF--IGIEVHEPGVG---KALKKIEEEGLTNLR-LLCGDAVEVLLDM--FPDG 110 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccE--EEEEechHHHH---HHHHHHHHcCCCCEE-EEecCHHHHHHHH--cCcc
Confidence 577899998555555555777653 3344 55554443331 356666554322344 445577 555421 4456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
.||.|+.|||....... . ...+.+...|++.+..+|+++|.+.++... . -....+.+...+.|+...
T Consensus 111 ~~D~V~~~~~~p~~~~~---~-----~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~-~-~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKR---H-----HKRRLVQPEFLALYARKLKPGGEIHFATDW-E-GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred ccceEEEECCCCCCCcc---c-----cccccCCHHHHHHHHHHcCCCCEEEEEcCC-H-HHHHHHHHHHHhCccccc
Confidence 79999999985432110 0 112335678999999999999999887322 1 123446677777887665
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0016 Score=60.96 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=96.4
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE--E-E
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL--V-L 79 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~--V-l 79 (214)
||.+.+-.-....-..+.+||=+|-|-=.++..+++..+ ...| ++.|..++..+ .+.+|++.+ |+. + .
T Consensus 223 Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v--~a~D~~~~~l~---~~~~n~~r~---g~~~~v~~ 293 (426)
T TIGR00563 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQV--VALDIHEHRLK---RVYENLKRL---GLTIKAET 293 (426)
T ss_pred ECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeE--EEEeCCHHHHH---HHHHHHHHc---CCCeEEEE
Confidence 333333333333445678999999766666667888775 3344 55565444331 456677654 443 2 2
Q ss_pred EccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCc------ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 80 HGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSE------QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 80 ~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~------~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
...|+..+.. ......||+|+-+-|+.|.+.-... .+...+..-..|-..++.+|..+|++||.+.++-|.-
T Consensus 294 ~~~d~~~~~~--~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 294 KDGDGRGPSQ--WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred eccccccccc--cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3345543322 1235679999999999986421111 0112233344567888999999999999999888876
Q ss_pred CC-CCcccHhhHHHhc-CCEE
Q 041136 154 HP-YNQWNVMGLADKL-GLVL 172 (214)
Q Consensus 154 ~P-y~~W~i~~lA~~~-gl~l 172 (214)
.| -+..+|..+.+++ ++.+
T Consensus 372 ~~~Ene~~v~~~l~~~~~~~~ 392 (426)
T TIGR00563 372 LPEENSEQIKAFLQEHPDFPF 392 (426)
T ss_pred ChhhCHHHHHHHHHhCCCCee
Confidence 55 4677777755544 5543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=57.62 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=85.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|-|.=.++.+|++... +..+ ++.|...+..+ .+++|++.+ |+.+ +.-|+.+.-. .....+
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~-~~~v--~~vDis~~al~---~A~~N~~~~---~~~~-~~~D~~~~l~--~~~~~~ 153 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALD-GIEL--HAADIDPAAVR---CARRNLADA---GGTV-HEGDLYDALP--TALRGR 153 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCC-CCEE--EEEECCHHHHH---HHHHHHHHc---CCEE-EEeechhhcc--hhcCCC
Confidence 345899998777667777887764 2345 45665444332 467777543 4444 3446554211 111346
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHH------------hHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKR------------HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~------------n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
||.||.|.|-...... .....+ .+. -.+++..++.+|..+|+++|.+.+.+... +.-.+..+.
T Consensus 154 fDlVv~NPPy~~~~~~-~~~~~e-~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---~~~~v~~~l 228 (251)
T TIGR03704 154 VDILAANAPYVPTDAI-ALMPPE-ARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---QAPLAVEAF 228 (251)
T ss_pred EeEEEECCCCCCchhh-hcCCHH-HHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---hHHHHHHHH
Confidence 9999999999864211 000001 111 13457899999999999999997775443 344677888
Q ss_pred HhcCCEEE
Q 041136 166 DKLGLVLK 173 (214)
Q Consensus 166 ~~~gl~l~ 173 (214)
++.|+...
T Consensus 229 ~~~g~~~~ 236 (251)
T TIGR03704 229 ARAGLIAR 236 (251)
T ss_pred HHCCCCce
Confidence 88887653
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=54.67 Aligned_cols=134 Identities=16% Similarity=0.077 Sum_probs=82.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
+-.+++||-||=|.=.+|..|+.... +...|++|..++..+ -+.+|++.+.-.++. +..-|+.++. ..
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~---~~~V~~iD~s~~~~~---~a~~~~~~~~~~~i~-~i~~d~~~~~-----~~ 107 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARP---ELKLTLLESNHKKVA---FLREVKAELGLNNVE-IVNGRAEDFQ-----HE 107 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCC---CCeEEEEeCcHHHHH---HHHHHHHHhCCCCeE-EEecchhhcc-----cc
Confidence 33588999999544444444665442 234677787665542 355666665433444 4455777752 24
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.+||.|+.|. .+. +..+++.+..+|++||.+.+.+.....-..+.+++.+...|+...++
T Consensus 108 ~~fD~I~s~~--~~~------------------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 108 EQFDVITSRA--LAS------------------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred CCccEEEehh--hhC------------------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeec
Confidence 6799999874 110 23456677899999999987753322223444555566689999987
Q ss_pred ecCCCC
Q 041136 176 VEFLKQ 181 (214)
Q Consensus 176 ~~F~~~ 181 (214)
-+|.-.
T Consensus 168 ~~~~~~ 173 (181)
T TIGR00138 168 PPLTGP 173 (181)
T ss_pred cccCCC
Confidence 776644
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.002 Score=54.66 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=86.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|=|.=.++.++++.+. ....++.|..+...+ .+..|++.+...++. +..-|+.+ .+...+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~---~~~v~~iD~~~~~~~---~a~~~~~~~~~~~~~-~~~~d~~~-----~~~~~~ 154 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP---DARVTAVDISPEALA---VARKNAARLGLDNVT-FLQSDWFE-----PLPGGK 154 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC---CCEEEEEECCHHHHH---HHHHHHHHcCCCeEE-EEECchhc-----cCcCCc
Confidence 345899999777677777888764 235667775554442 466676654322233 33445543 133578
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHH------------hHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKR------------HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~------------n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
||.||.|+|-....... ..... ++. ....+..|++.+..+|+++|.+.+..-. .+.-.+.++.
T Consensus 155 fD~Vi~npPy~~~~~~~-~~~~~-~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---~~~~~~~~~l 229 (251)
T TIGR03534 155 FDLIVSNPPYIPEADIH-LLDPE-VRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---DQGEAVRALF 229 (251)
T ss_pred eeEEEECCCCCchhhhh-hcChh-hhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---cHHHHHHHHH
Confidence 99999999987642110 00000 110 1234678999999999999999876421 2345577788
Q ss_pred HhcCCEEEE
Q 041136 166 DKLGLVLKE 174 (214)
Q Consensus 166 ~~~gl~l~~ 174 (214)
.++|+.-..
T Consensus 230 ~~~gf~~v~ 238 (251)
T TIGR03534 230 EAAGFADVE 238 (251)
T ss_pred HhCCCCceE
Confidence 888986554
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0021 Score=57.92 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=83.7
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+||-+|-|.=.++.+|++.+. +..+|+.|..++.. ..+.+|++.+.-.+-..+..-|+.+ .+...+||
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p---~~~V~avDis~~al---~~A~~n~~~~~l~~~i~~~~~D~~~-----~l~~~~fD 203 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFP---DAEVDAVDISPDAL---AVAEINIERHGLEDRVTLIESDLFA-----ALPGRRYD 203 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCC---CCEEEEEeCCHHHH---HHHHHHHHHhCCCCcEEEEECchhh-----hCCCCCcc
Confidence 6899999888788888988763 34455667544433 2577887766422212233345532 12235799
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhc
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKL 168 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~ 168 (214)
.||.|.|.++... ...-..+ ++ ..-++...++..|..+|++||.+.+.+-.. .. .+..+....
T Consensus 204 lIvsNPPyi~~~~-~~~l~~~-~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~---~~-~~~~~~~~~ 277 (307)
T PRK11805 204 LIVSNPPYVDAED-MADLPAE-YRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS---RV-HLEEAYPDV 277 (307)
T ss_pred EEEECCCCCCccc-hhhcCHh-hccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC---HH-HHHHHHhhC
Confidence 9999999987532 1100000 00 013577899999999999999998764432 12 255665566
Q ss_pred CCEEE
Q 041136 169 GLVLK 173 (214)
Q Consensus 169 gl~l~ 173 (214)
++...
T Consensus 278 ~~~~~ 282 (307)
T PRK11805 278 PFTWL 282 (307)
T ss_pred CCEEE
Confidence 65543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00053 Score=63.98 Aligned_cols=135 Identities=12% Similarity=0.152 Sum_probs=85.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
+...+|-||=|.=-|+..+|+.+. ..+++|. |-...... .+..++....-.++. +...||..+-. .+....
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGI--EI~~~~i~---~a~~ka~~~gL~NV~-~i~~DA~~ll~--~~~~~s 192 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGI--EIHTPSIE---QVLKQIELLNLKNLL-IINYDARLLLE--LLPSNS 192 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEE--ECCHHHHH---HHHHHHHHcCCCcEE-EEECCHHHhhh--hCCCCc
Confidence 356899999666566666888873 4455554 53333321 244445443323444 45678987653 266788
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVL 172 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l 172 (214)
+|+|+.|||-.-.+ .+. .|.....|+..+..+|++||.+++.--. .+|-.|-+..+.+...+..
T Consensus 193 ~D~I~lnFPdPW~K----krH------RRlv~~~fL~e~~RvLkpGG~l~l~TD~-~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 193 VEKIFVHFPVPWDK----KPH------RRVISEDFLNEALRVLKPGGTLELRTDS-ELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eeEEEEeCCCCccc----cch------hhccHHHHHHHHHHHcCCCcEEEEEEEC-HHHHHHHHHHHHhCCCcee
Confidence 99999999854332 111 1334689999999999999999887433 4466666666655545544
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.006 Score=51.50 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-+|=|.=+++..|++..++... .|++|..++..+ .+++++......++.+ ..-|+.++. +.
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~v~~-~~~d~~~~~----~~ 111 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGH--VIGLDFSENMLS---VGRQKVKDAGLHNVEL-VHGNAMELP----FD 111 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCE--EEEEECCHHHHH---HHHHHHHhcCCCceEE-EEechhcCC----CC
Confidence 4567889999997777777789988765444 455665444432 3566665443323444 334666543 34
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.+++..-.. + ...+++.+..+|++||.+.+.
T Consensus 112 ~~~fD~V~~~~~l~~~~----~------------~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVP----D------------YMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred CCCccEEEEecccccCC----C------------HHHHHHHHHHHcCcCeEEEEE
Confidence 56899999987642211 0 124667788999999998654
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0019 Score=64.23 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=93.4
Q ss_pred ccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCC
Q 041136 11 KWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDR 89 (214)
Q Consensus 11 ~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~ 89 (214)
.++..+..+++||-+|=|.=.||..+++. | +. -+|+.|..+...+ -+++|++.+.-. .-.-+...|+.+.-+
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~--~V~~vD~s~~al~---~a~~N~~~ng~~~~~v~~i~~D~~~~l~ 603 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGTASVHAALG-G-AK--STTTVDMSNTYLE---WAERNFALNGLSGRQHRLIQADCLAWLK 603 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCHHHHHHHHC-C-CC--EEEEEeCCHHHHH---HHHHHHHHhCCCccceEEEEccHHHHHH
Confidence 45667778899999885444455456653 2 22 3667786555442 477888765422 123445567654221
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
. + ..+||.||.|.|-.+......+ . ..-..-....+..|..+|++||.+.++.+... ... ..+.+.++|
T Consensus 604 ~--~-~~~fDlIilDPP~f~~~~~~~~-~----~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~--~~~~~~~~g 672 (702)
T PRK11783 604 E--A-REQFDLIFIDPPTFSNSKRMED-S----FDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKM--DEEGLAKLG 672 (702)
T ss_pred H--c-CCCcCEEEECCCCCCCCCccch-h----hhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CCh--hHHHHHhCC
Confidence 1 1 4679999999998864211111 0 11122345567779999999999887765433 232 266777888
Q ss_pred CEEEEEe-cCCCCCCC
Q 041136 170 LVLKEKV-EFLKQDFP 184 (214)
Q Consensus 170 l~l~~~~-~F~~~~yP 184 (214)
+.+.... .-.+.++|
T Consensus 673 ~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 673 LKAEEITAKTLPPDFA 688 (702)
T ss_pred CeEEEEecCCCCCCCC
Confidence 8887643 33445555
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=58.20 Aligned_cols=133 Identities=21% Similarity=0.306 Sum_probs=77.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-+++++||-+|=|-=+++.-+|+.+| +++++.++ |.++.. .+.+.++.+...+...+.-.|..++..
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitl-S~~Q~~----~a~~~~~~~gl~~~v~v~~~D~~~~~~----- 126 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITL-SEEQAE----YARERIREAGLEDRVEVRLQDYRDLPG----- 126 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES--HHHHH----HHHHHHHCSTSSSTEEEEES-GGG--------
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEEC-CHHHHH----HHHHHHHhcCCCCceEEEEeeccccCC-----
Confidence 467899999999887788888999995 46666655 333332 244445444322333444467766542
Q ss_pred CCcccEEEEc--CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE---EecCCC---------------
Q 041136 95 QMKFDVIIFN--FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV---TLRDDH--------------- 154 (214)
Q Consensus 95 ~~~FD~IiFN--FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V---Tl~~~~--------------- 154 (214)
+||+||.- |-|+|.+ =+..||+.+..+|+|||.+.| |..+..
T Consensus 127 --~fD~IvSi~~~Ehvg~~----------------~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ky 188 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRK----------------NYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKY 188 (273)
T ss_dssp --S-SEEEEESEGGGTCGG----------------GHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHH
T ss_pred --CCCEEEEEechhhcChh----------------HHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEe
Confidence 89999986 8898842 256789999999999999743 332210
Q ss_pred --C----CCcccHhhHHHhcCCEEEEEec
Q 041136 155 --P----YNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 --P----y~~W~i~~lA~~~gl~l~~~~~ 177 (214)
| -....+...+...||.+.....
T Consensus 189 iFPgg~lps~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 189 IFPGGYLPSLSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp TSTTS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred eCCCCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence 1 1233455667778888876543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=59.61 Aligned_cols=146 Identities=15% Similarity=0.237 Sum_probs=89.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHH-HHHHHHhCCCEEEEcccccc-CCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQA-HLQSLWSRGCLVLHGVNVHT-MDRHPT 92 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~-ni~~L~~~g~~Vl~~VDAt~-L~~~~~ 92 (214)
-.+.++||++|=|+=+.++.+.++ .+..+|++.-+|.+ -++.++||...+ |-..+..-.+.++++ ||.+ |..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~-Da~~fL~~--- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVC-DAKEFLSS--- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEEC-cHHHHHHh---
Confidence 355679999998887777767764 33457777777754 233334432111 111222334555444 5554 322
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC----cccHhhHHHhc
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN----QWNVMGLADKL 168 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~----~W~i~~lA~~~ 168 (214)
...+||.||-+.|..-.. ......-..||+.++..|+++|.+.+. .+.|.. .|.+....++.
T Consensus 223 -~~~~YDVIIvDl~DP~~~-----------~~~~LyT~EFy~~~~~~LkPgGV~V~Q--s~sp~~~~~~~~~i~~tL~~a 288 (374)
T PRK01581 223 -PSSLYDVIIIDFPDPATE-----------LLSTLYTSELFARIATFLTEDGAFVCQ--SNSPADAPLVYWSIGNTIEHA 288 (374)
T ss_pred -cCCCccEEEEcCCCcccc-----------chhhhhHHHHHHHHHHhcCCCcEEEEe--cCChhhhHHHHHHHHHHHHHh
Confidence 245799999999874321 012333478999999999999987555 334543 38888888888
Q ss_pred CCEEEEEecCCC
Q 041136 169 GLVLKEKVEFLK 180 (214)
Q Consensus 169 gl~l~~~~~F~~ 180 (214)
++....-.-+-|
T Consensus 289 f~~v~~y~t~vP 300 (374)
T PRK01581 289 GLTVKSYHTIVP 300 (374)
T ss_pred CCceEEEEEecC
Confidence 887776444433
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0014 Score=48.73 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=70.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc-ccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV-HTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA-t~L~~~~~~~~~ 96 (214)
++.+||-||=|.=+++..|++.+. +.+ .+++|..+++.+ .+.+++.......-.-++.-|+ ...+ ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~i~~~~~d~~~~~~-----~~~ 69 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GAR--VVGVDISPEMLE---IARERAAEEGLSDRITFVQGDAEFDPD-----FLE 69 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSE--EEEEESSHHHHH---HHHHHHHHTTTTTTEEEEESCCHGGTT-----TSS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCE--EEEEeCCHHHHH---HHHHHHHhcCCCCCeEEEECccccCcc-----cCC
Confidence 468999999777777777988654 334 555665455442 4667775544334445566677 2221 235
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+||.|+.+. ...... + +.+-...+++.+.++|+|||.+.|+-
T Consensus 70 ~~D~v~~~~-~~~~~~---------~--~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 70 PFDLVICSG-FTLHFL---------L--PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CEEEEEECS-GSGGGC---------C--HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEECC-Cccccc---------c--chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 599999998 432100 1 11445667888999999999999874
|
... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0036 Score=59.06 Aligned_cols=143 Identities=16% Similarity=0.104 Sum_probs=86.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|-|.=.++.+|++... ..++ |+.|..++..+ .+++|++.+. ..+.+ ..-|..+.. .....
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p-~a~V--tAVDiS~~ALe---~AreNa~~~g-~rV~f-i~gDl~e~~---l~~~~ 318 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERP-DAFV--RASDISPPALE---TARKNAADLG-ARVEF-AHGSWFDTD---MPSEG 318 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCC-CCEE--EEEECCHHHHH---HHHHHHHHcC-CcEEE-EEcchhccc---cccCC
Confidence 3556999999776666777887653 2344 55665444432 4777877653 12333 334543321 01234
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
+||.||.|.|.+..... +.....++ .-.+.++.++..+..+|+++|.+.+-+-. .+.-.+.+++
T Consensus 319 ~FDLIVSNPPYI~~~e~--~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---~Q~e~V~~ll 393 (423)
T PRK14966 319 KWDIIVSNPPYIENGDK--HLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---DQGAAVRGVL 393 (423)
T ss_pred CccEEEECCCCCCcchh--hhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---cHHHHHHHHH
Confidence 79999999999865321 11000011 11345779999999999999998665422 2345688888
Q ss_pred HhcCCEEEEE
Q 041136 166 DKLGLVLKEK 175 (214)
Q Consensus 166 ~~~gl~l~~~ 175 (214)
...|+...+.
T Consensus 394 ~~~Gf~~v~v 403 (423)
T PRK14966 394 AENGFSGVET 403 (423)
T ss_pred HHCCCcEEEE
Confidence 8889876553
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0032 Score=60.49 Aligned_cols=141 Identities=17% Similarity=0.150 Sum_probs=84.8
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-+|-|.=.++.+|++.+. ... +|+.|..++..+ .+.+|++.+.-.+..-+...|+.. .+...+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~--v~avDis~~al~---~A~~N~~~~~l~~~v~~~~~D~~~-----~~~~~~f 207 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NAN--VIATDISLDAIE---VAKSNAIKYEVTDRIQIIHSNWFE-----NIEKQKF 207 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCe--EEEEECCHHHHH---HHHHHHHHcCCccceeeeecchhh-----hCcCCCc
Confidence 46899999777667777888764 234 455564343331 477777654321222234445432 1234579
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHh
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADK 167 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~ 167 (214)
|.||.|.|.+..... .+...+... .-.+.+..++..|..+|+++|.+.+.+-. .+...+..+...
T Consensus 208 DlIvsNPPYi~~~~~-~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---~q~~~v~~~~~~ 283 (506)
T PRK01544 208 DFIVSNPPYISHSEK-SEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---KQEEAVTQIFLD 283 (506)
T ss_pred cEEEECCCCCCchhh-hhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---chHHHHHHHHHh
Confidence 999999999875321 000000000 01346788899999999999999776433 234567777778
Q ss_pred cCCEEEE
Q 041136 168 LGLVLKE 174 (214)
Q Consensus 168 ~gl~l~~ 174 (214)
.|+....
T Consensus 284 ~g~~~~~ 290 (506)
T PRK01544 284 HGYNIES 290 (506)
T ss_pred cCCCceE
Confidence 8876544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0011 Score=63.78 Aligned_cols=137 Identities=20% Similarity=0.262 Sum_probs=84.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHH-HHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQ-AHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~-~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+.++||.+|=|+=..++.++++ +....+++.-+|.+- ++.++++... -|-..+..-.++++.+ |+.+.-+. .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~-Da~~~l~~---~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND-DAFNWLRK---L 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC-hHHHHHHh---C
Confidence 56789999999988888888864 322466666555432 2222211100 0111222234566554 77763221 1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC----CcccHhhHHHhcCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY----NQWNVMGLADKLGL 170 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py----~~W~i~~lA~~~gl 170 (214)
.++||.||-|+|+..... ..+..-..||+.+++.|+++|.+.+.. +.|+ ..|.+.+..++.|+
T Consensus 371 ~~~fDvIi~D~~~~~~~~-----------~~~L~t~ef~~~~~~~L~pgG~lv~~~--~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPA-----------LGKLYSVEFYRLLKRRLAPDGLLVVQS--TSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCCCEEEEeCCCCCCcc-----------hhccchHHHHHHHHHhcCCCeEEEEec--CCcccchHHHHHHHHHHHHcCC
Confidence 358999999999864311 122234679999999999999987764 2343 35788888888888
Q ss_pred E
Q 041136 171 V 171 (214)
Q Consensus 171 ~ 171 (214)
.
T Consensus 438 ~ 438 (521)
T PRK03612 438 A 438 (521)
T ss_pred E
Confidence 3
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0059 Score=51.31 Aligned_cols=133 Identities=14% Similarity=0.026 Sum_probs=78.3
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
++||-||-|.=.++..+++.++ ..+++ ++|..++.. ..+.+++....-.+..-+...|+.+.. + ..+||
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~--gid~s~~~~---~~a~~~~~~~gl~~~i~~~~~d~~~~~----~-~~~fD 69 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLH--GYTISPEQA---EVGRERIRALGLQGRIRIFYRDSAKDP----F-PDTYD 69 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEE--EEECCHHHH---HHHHHHHHhcCCCcceEEEecccccCC----C-CCCCC
Confidence 4799999665556667888874 23444 555333332 135555544321222334445665431 2 24799
Q ss_pred EEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC---CCC----------CCcccHhhH
Q 041136 100 VIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD---DHP----------YNQWNVMGL 164 (214)
Q Consensus 100 ~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~---~~P----------y~~W~i~~l 164 (214)
.|+.+. -|++ -...+|+++..+|+|+|.+.++-.. ..+ .+.-.+..+
T Consensus 70 ~I~~~~~l~~~~------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 131 (224)
T smart00828 70 LVFGFEVIHHIK------------------DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAEL 131 (224)
T ss_pred EeehHHHHHhCC------------------CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHH
Confidence 998532 2221 1357899999999999998765211 000 011235567
Q ss_pred HHhcCCEEEEEecCCCC
Q 041136 165 ADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~ 181 (214)
.+++|+.+.+...+..+
T Consensus 132 l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 132 LARNNLRVVEGVDASLE 148 (224)
T ss_pred HHHCCCeEEEeEECcHh
Confidence 88899999998877554
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0066 Score=51.59 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=77.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH---- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~---- 90 (214)
.++++.+||-+|=|.=+|+..|++..+....|+|.=++. + . ...|+.++.+ |+++....
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~-~------------~~~~v~~i~~-D~~~~~~~~~i~ 110 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---M-D------------PIVGVDFLQG-DFRDELVLKALL 110 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc---c-c------------CCCCcEEEec-CCCChHHHHHHH
Confidence 357788999998666667777888876544566655544 1 0 1135665554 88875310
Q ss_pred CCCCCCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 91 PTLSQMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 91 ~~~~~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
..+....||.|+-|. ||..+.. ..+ +..+-.++...++.+..+|++||.+.|.+..+..
T Consensus 111 ~~~~~~~~D~V~S~~~~~~~g~~---~~d---~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAPNMSGTP---AVD---IPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred HHhCCCCCCEEecCCCCccCCCh---HHH---HHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 013457899999998 8885421 111 1123345788999999999999999887666553
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0044 Score=49.22 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=73.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+++.+||=+|=|.=-++..|++.+.++.+ .++.|..+++.+ .+..+++.+.-. -.-+...|++++.+. +. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~--i~gvD~s~~~i~---~a~~~~~~~~~~-ni~~~~~d~~~l~~~--~~-~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAK--IIGVDISEEMIE---YAKKRAKELGLD-NIEFIQGDIEDLPQE--LE-E 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSE--EEEEESSHHHHH---HHHHHHHHTTST-TEEEEESBTTCGCGC--SS-T
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCE--EEEEECcHHHHH---Hhhccccccccc-ccceEEeehhccccc--cC-C
Confidence 56789999995554455558876554334 778887666653 355555555433 345566888887653 33 7
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
.||.|+.+.+-... .-...+++.+..+|+++|.+.++...
T Consensus 73 ~~D~I~~~~~l~~~----------------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHF----------------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGT----------------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhc----------------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 89999999664221 11235677899999999999877443
|
... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=57.77 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=73.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...++||.||=|.-+++..|++.++ ...| |+.|..+++.+ -+.++...... ..+.|+.+ ||.+.-.. ..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v--~~VEidp~vi~---~A~~~f~~~~~~~rv~v~~~-Da~~~l~~---~~ 134 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQ--TAVEINPQVIA---VARNHFELPENGERFEVIEA-DGAEYIAV---HR 134 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeE--EEEECCHHHHH---HHHHHcCCCCCCCceEEEEC-CHHHHHHh---CC
Confidence 3567899999999999999998874 3344 55555444442 24444332221 24566665 77653211 13
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.+||.|+.|.-+..... .......||+.|..+|+++|.+.|.+....|
T Consensus 135 ~~yD~I~~D~~~~~~~~------------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 135 HSTDVILVDGFDGEGII------------DALCTQPFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred CCCCEEEEeCCCCCCCc------------cccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence 57999999854422110 0112479999999999999999887654443
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.028 Score=48.84 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=78.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+++||.+|=|.=-.+..+++..+....|+ +.|..++..+ .+.+|++.+.-.++.++ .-|+..+. +.
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~--gvD~s~~~l~---~A~~~~~~~g~~~v~~~-~~d~~~l~----~~ 143 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVI--GVDMTPEMLA---KARANARKAGYTNVEFR-LGEIEALP----VA 143 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEE--EECCCHHHHH---HHHHHHHHcCCCCEEEE-EcchhhCC----CC
Confidence 456889999999554222333566665433454 5664444332 36666655432233333 33565543 34
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE-e-cCCC------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT-L-RDDH------------------ 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT-l-~~~~------------------ 154 (214)
...||.|+.|.-..-.. + ....|+.+..+|++||.+.++ + ..+.
T Consensus 144 ~~~fD~Vi~~~v~~~~~----d------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (272)
T PRK11873 144 DNSVDVIISNCVINLSP----D------------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAG 207 (272)
T ss_pred CCceeEEEEcCcccCCC----C------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccC
Confidence 56899999986322111 0 124566788999999999774 1 1111
Q ss_pred CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.++...+..+.+.+|+...+....
T Consensus 208 ~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 208 ALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred CCCHHHHHHHHHHCCCCceEEEec
Confidence 122334667777889887665443
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0062 Score=53.86 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=82.4
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCCCcc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
.+||-+|-|.=.++.+|+.... ...+ ++.|...+..+ -+.+|++.+.-.+ +.+ +.-|+.+ .+...+|
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~-~~~v--~avDis~~al~---~a~~n~~~~~~~~~v~~-~~~d~~~-----~~~~~~f 183 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP-NAEV--IAVDISPDALA---VAEENAEKNQLEHRVEF-IQSNLFE-----PLAGQKI 183 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC-CCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEE-EECchhc-----cCcCCCc
Confidence 6899999887788888988763 2344 55564443331 4777877664322 333 3335432 1333479
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHH-----------HhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHH-
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIK-----------RHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLAD- 166 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~-----------~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~- 166 (214)
|.||.|.|-+.........+ .+. ....++..++..|..+|+++|.+.+.+-..+ .=.+.++..
T Consensus 184 DlIvsNPPyi~~~~~~~~~~--~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q---~~~~~~~~~~ 258 (284)
T TIGR00536 184 DIIVSNPPYIDEEDLADLPN--VVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQ---QKSLKELLRI 258 (284)
T ss_pred cEEEECCCCCCcchhhcCCc--ccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccH---HHHHHHHHHh
Confidence 99999999986532110110 000 1235788999999999999999987754322 123445544
Q ss_pred hcCCEEEE
Q 041136 167 KLGLVLKE 174 (214)
Q Consensus 167 ~~gl~l~~ 174 (214)
..|+.-.+
T Consensus 259 ~~~~~~~~ 266 (284)
T TIGR00536 259 KFTWYDVE 266 (284)
T ss_pred cCCCceeE
Confidence 35664333
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0072 Score=56.47 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=88.7
Q ss_pred cccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCC
Q 041136 12 WISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRH 90 (214)
Q Consensus 12 ~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~ 90 (214)
++..+..+++||-+|-|.=+|+.+.+. +.+. -+|+.|..+...+ .+.+|++.+.-. ....+..-|+.+.-..
T Consensus 214 ~~~~~~~g~rVLDlfsgtG~~~l~aa~--~ga~--~V~~VD~s~~al~---~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~ 286 (396)
T PRK15128 214 ATRRYVENKRVLNCFSYTGGFAVSALM--GGCS--QVVSVDTSQEALD---IARQNVELNKLDLSKAEFVRDDVFKLLRT 286 (396)
T ss_pred HHHHhcCCCeEEEeccCCCHHHHHHHh--CCCC--EEEEEECCHHHHH---HHHHHHHHcCCCCCcEEEEEccHHHHHHH
Confidence 344566789999998444344433332 2233 3456675555442 477888776421 1223444576653211
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc----HhhHHH
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN----VMGLAD 166 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~----i~~lA~ 166 (214)
......+||.||.|.|-..... ..+..-..-+..++..|.++|+++|.+..+-|.+. .+... +.+.|.
T Consensus 287 ~~~~~~~fDlVilDPP~f~~~k-------~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~-~~~~~f~~~v~~aa~ 358 (396)
T PRK15128 287 YRDRGEKFDVIVMDPPKFVENK-------SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGL-MTSDLFQKIIADAAI 358 (396)
T ss_pred HHhcCCCCCEEEECCCCCCCCh-------HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCc-CCHHHHHHHHHHHHH
Confidence 0012457999999999754311 11111222366777889999999999998877655 33222 445566
Q ss_pred hcCCEEEEEe-cCCCCCCC
Q 041136 167 KLGLVLKEKV-EFLKQDFP 184 (214)
Q Consensus 167 ~~gl~l~~~~-~F~~~~yP 184 (214)
++|-.+.-.. .-.+.++|
T Consensus 359 ~~~~~~~~l~~~~~~~DhP 377 (396)
T PRK15128 359 DAGRDVQFIEQFRQAADHP 377 (396)
T ss_pred HcCCeEEEEEEcCCCCCCC
Confidence 6665544322 23555555
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0092 Score=49.24 Aligned_cols=111 Identities=18% Similarity=0.206 Sum_probs=70.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----C
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH----P 91 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~----~ 91 (214)
..++++||-+|-|.=.++..+++.+.....|+|.-.+. +. ...++. ++..|+++.... .
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~--~~--------------~~~~i~-~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP--MK--------------PIENVD-FIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccc--cc--------------cCCCce-EEEeeCCChhHHHHHHH
Confidence 36788999999777777777888775444676664443 21 112444 445577653210 0
Q ss_pred CCCCCcccEEEEcC-CCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 92 TLSQMKFDVIIFNF-PHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 92 ~~~~~~FD~IiFNF-PH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.+...+||.|+.|. ||. |.. ..+ .-...+++..++..+..+|+++|.+.+..
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~----~~~---~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYW----DID---HLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCc----ccc---HHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 13356799999987 554 321 111 11234678899999999999999998864
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.015 Score=47.87 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=80.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||-|.=+++..+++... +.-.|++|..++..+ .+++|++.+.-.++.++.+ |+.. .+
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~---~~~v~~vD~s~~~~~---~a~~n~~~~~~~~i~~~~~-d~~~-----~~- 94 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFP---SLQVTAIERNPDALR---LIKENRQRFGCGNIDIIPG-EAPI-----EL- 94 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCC---CCEEEEEECCHHHHH---HHHHHHHHhCCCCeEEEec-Cchh-----hc-
Confidence 445788999999887788877888753 344667776554432 4677777664334555443 4421 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..+||.|+.+... . .+..++..+..+|+++|.+.+.... +.+.=++..+.++.|+...+
T Consensus 95 ~~~~D~v~~~~~~--~-----------------~~~~~l~~~~~~Lk~gG~lv~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 95 PGKADAIFIGGSG--G-----------------NLTAIIDWSLAHLHPGGRLVLTFIL--LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CcCCCEEEECCCc--c-----------------CHHHHHHHHHHhcCCCeEEEEEEec--HhhHHHHHHHHHHCCCCcce
Confidence 2479999987431 0 1245677889999999998765321 11233466788888986555
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 154 ~ 154 (187)
T PRK08287 154 C 154 (187)
T ss_pred E
Confidence 3
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0012 Score=55.85 Aligned_cols=149 Identities=18% Similarity=0.263 Sum_probs=89.5
Q ss_pred CccccccCCCCCC-eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc
Q 041136 8 KKVKWISHYTNNQ-RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT 86 (214)
Q Consensus 8 ~~~~~~~~~~~~~-~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~ 86 (214)
+...|-..|.+.. -+|.||=|+=-|..++|+.+. ..|+++. |-...... .+...+....-.++.+ ...||..
T Consensus 6 ~~~~~~~~f~~~~~l~lEIG~G~G~~l~~~A~~~P-d~n~iGi--E~~~~~v~---~a~~~~~~~~l~Nv~~-~~~da~~ 78 (195)
T PF02390_consen 6 EPLDWQEIFGNDNPLILEIGCGKGEFLIELAKRNP-DINFIGI--EIRKKRVA---KALRKAEKRGLKNVRF-LRGDARE 78 (195)
T ss_dssp CTTCHHHHHTSCCEEEEEET-TTSHHHHHHHHHST-TSEEEEE--ES-HHHHH---HHHHHHHHHTTSSEEE-EES-CTT
T ss_pred CccCHHHHcCCCCCeEEEecCCCCHHHHHHHHHCC-CCCEEEE--ecchHHHH---HHHHHHHhhcccceEE-EEccHHH
Confidence 5666766676666 578888544445555887774 5566654 44333331 2444454444344555 5558887
Q ss_pred -CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 87 -MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 87 -L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
|... +...++|.|..|||-.=.+. +. ..+|-+=..|+.....+|++||.|++.- |..+|-.|-+..+.
T Consensus 79 ~l~~~--~~~~~v~~i~i~FPDPWpK~----rH----~krRl~~~~fl~~~~~~L~~gG~l~~~T-D~~~y~~~~~~~~~ 147 (195)
T PF02390_consen 79 LLRRL--FPPGSVDRIYINFPDPWPKK----RH----HKRRLVNPEFLELLARVLKPGGELYFAT-DVEEYAEWMLEQFE 147 (195)
T ss_dssp HHHHH--STTTSEEEEEEES-----SG----GG----GGGSTTSHHHHHHHHHHEEEEEEEEEEE-S-HHHHHHHHHHHH
T ss_pred HHhhc--ccCCchheEEEeCCCCCccc----ch----hhhhcCCchHHHHHHHHcCCCCEEEEEe-CCHHHHHHHHHHHH
Confidence 3322 44578999999999885431 11 1234455778888999999999997662 33568888888888
Q ss_pred H-hcCCEEEE
Q 041136 166 D-KLGLVLKE 174 (214)
Q Consensus 166 ~-~~gl~l~~ 174 (214)
. ..++....
T Consensus 148 ~~~~~f~~~~ 157 (195)
T PF02390_consen 148 ESHPGFENIE 157 (195)
T ss_dssp HHSTTEEEE-
T ss_pred hcCcCeEEcc
Confidence 8 47887764
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.041 Score=48.14 Aligned_cols=110 Identities=13% Similarity=0.086 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~Vl~~VDAt~L~~~~~ 92 (214)
.-.++.+||-||=|.=.++..|++..++.. ..++.|..+++.+ .+.++....... .-.-+..-|+.++.
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~---~A~~r~~~~~~~~~~~i~~~~~d~~~lp---- 140 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLA---VAASRQELKAKSCYKNIEWIEGDATDLP---- 140 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHH---HHHHHhhhhhhccCCCeEEEEcccccCC----
Confidence 345688999998544445666888775433 4556775555442 233332211111 11234556777663
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+...+||.|+.+|-..-.. + ...+++.+..+|+|||.+.|+
T Consensus 141 ~~~~sfD~V~~~~~l~~~~-------------d---~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVV-------------D---RLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred CCCCCEeEEEEecccccCC-------------C---HHHHHHHHHHHcCcCcEEEEE
Confidence 5567899999887543221 1 245678899999999998665
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.02 Score=47.81 Aligned_cols=106 Identities=17% Similarity=0.245 Sum_probs=65.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||.||-|.=.++..+++.++. +.-.++.|..+...+ .+++++......+...+...|+.++. +....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~--~~~v~~~D~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 121 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGK--TGEVVGLDFSEGMLA---VGREKLRDLGLSGNVEFVQGDAEALP----FPDNS 121 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCC--CCeEEEEeCCHHHHH---HHHHhhcccccccCeEEEecccccCC----CCCCC
Confidence 5689999997776777778887742 345666665444432 34444433211233344556887754 33467
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
||.|+.++=.... .-+..+++.+..+|+++|.+.+
T Consensus 122 ~D~I~~~~~l~~~----------------~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 122 FDAVTIAFGLRNV----------------PDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred ccEEEEecccccC----------------CCHHHHHHHHHHhccCCcEEEE
Confidence 9999875422111 1134567888999999999854
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0084 Score=53.28 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=69.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L~~~~ 91 (214)
.+.++||.+|=|+-+.++.++++.+ ..+|++.-+|. ++.+ -+.+++..+. .-.+.+ +.-||.+.-..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~--~vv~---~a~~~~~~~~~~~~~d~rv~v-~~~Da~~~l~~- 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDE--RVVE---VCRKYLPEIAGGAYDDPRVEL-VIGDGIKFVAE- 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCH--HHHH---HHHHHhHHhccccccCCceEE-EECchHHHHhh-
Confidence 4678999999999999998887533 33555555554 3332 2455555442 223444 44566653221
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..++||.||-+.+..-... ....-..||+.++++|+++|.+.+-
T Consensus 147 --~~~~yDvIi~D~~dp~~~~------------~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 147 --TENSFDVIIVDSTDPVGPA------------EGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred --CCCcccEEEECCCCCCCch------------hhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 3468999999964332110 1223578999999999999987653
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.068 Score=49.17 Aligned_cols=123 Identities=17% Similarity=0.231 Sum_probs=75.8
Q ss_pred EEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCc------cc
Q 041136 46 MVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSE------QD 118 (214)
Q Consensus 46 l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~------~~ 118 (214)
.+.+++|... -+. -..+|++.|...+ .++...|+..+... .....+||+|+-+=|+.|.+.=-++ ++
T Consensus 183 ~iV~A~D~~~~Rl~----~l~~nl~RlG~~n-v~~~~~d~~~~~~~-~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~ 256 (355)
T COG0144 183 AIVVAVDVSPKRLK----RLRENLKRLGVRN-VIVVNKDARRLAEL-LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRT 256 (355)
T ss_pred ceEEEEcCCHHHHH----HHHHHHHHcCCCc-eEEEeccccccccc-ccccCcCcEEEECCCCCCCcccccCccccccCC
Confidence 4455666433 222 2344555554333 36777888776542 1223479999999999987531111 22
Q ss_pred HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHh-cCCEEEE
Q 041136 119 TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADK-LGLVLKE 174 (214)
Q Consensus 119 ~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~-~gl~l~~ 174 (214)
...+.....|=...+.+|.++|++||.+..+.|.-.|-- .=.|....++ .++.+..
T Consensus 257 ~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 257 PEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEP 314 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeec
Confidence 334555566777889999999999999999988876643 3334443333 3665554
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.035 Score=41.44 Aligned_cols=106 Identities=12% Similarity=0.046 Sum_probs=67.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+++||-+|-|.=.++..+++..+ . ...|+.|..+... ..+..|++.+...++. ++.-|+..... ...
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~-~--~~v~~vD~s~~~~---~~a~~~~~~~~~~~~~-~~~~~~~~~~~---~~~ 86 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVP-N--GRVYAIERNPEAL---RLIERNARRFGVSNIV-IVEGDAPEALE---DSL 86 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCC-C--ceEEEEcCCHHHH---HHHHHHHHHhCCCceE-EEeccccccCh---hhc
Confidence 34567999999888777888888764 2 3346667544433 1356666665433333 33345543211 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.+||.|+...+. ..+..+++.+.++|+++|.+.++.
T Consensus 87 ~~~D~v~~~~~~-------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGGSG-------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECCcc-------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 479999985421 013488999999999999998875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0073 Score=53.12 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH----hCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW----SRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~----~~g~~Vl~~VDAt~L~~~~~ 92 (214)
++.++||.+|-|+-++++.++++. +..++++.-.|. ++.+ .+.+++..+. ...+.+.. -|+.+.-..
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~--~vi~---~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~-- 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDE--KVIE---LSKKFLPSLAGSYDDPRVDLQI-DDGFKFLAD-- 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCH--HHHH---HHHHHhHhhcccccCCceEEEE-CchHHHHHh--
Confidence 345699999999999998888764 234566666654 3321 2444444332 22344443 455432111
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..++||.||.+.|..-... ..-....||+.++.+|+++|.+.+.
T Consensus 142 -~~~~yDvIi~D~~~~~~~~------------~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 -TENTFDVIIVDSTDPVGPA------------ETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred -CCCCccEEEEeCCCCCCcc------------cchhHHHHHHHHHHHhCCCcEEEEc
Confidence 1368999999987542210 1123579999999999999998765
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0088 Score=55.82 Aligned_cols=138 Identities=15% Similarity=0.090 Sum_probs=80.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-+|=|-=.||+.||+.. ..+ +++|..++..+ .+.+|++.+.-.++.++. -|+.++-....+...
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~---~~V--~~vE~~~~av~---~a~~n~~~~~~~nv~~~~-~d~~~~l~~~~~~~~ 361 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA---KSV--VGIEVVPESVE---KAQQNAELNGIANVEFLA-GTLETVLPKQPWAGQ 361 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC---CEE--EEEEcCHHHHH---HHHHHHHHhCCCceEEEe-CCHHHHHHHHHhcCC
Confidence 456789888754444455577653 234 66775555442 577888765433455444 466553111112345
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCc-ccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQ-WNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~-W~i~~lA~~~gl~l~~~ 175 (214)
.||.||.|.|..|.. .++|... .. +++++-|+|+ |+ |-+. -++. +..+.||.+...
T Consensus 362 ~~D~vi~dPPr~G~~--------------~~~l~~l----~~-l~~~~ivyvs-c~--p~tlard~~-~l~~~gy~~~~~ 418 (431)
T TIGR00479 362 IPDVLLLDPPRKGCA--------------AEVLRTI----IE-LKPERIVYVS-CN--PATLARDLE-FLCKEGYGITWV 418 (431)
T ss_pred CCCEEEECcCCCCCC--------------HHHHHHH----Hh-cCCCEEEEEc-CC--HHHHHHHHH-HHHHCCeeEEEE
Confidence 799999999988742 2223221 11 5777656665 33 5332 2233 334678999999
Q ss_pred ecCCCCCCCCCcc
Q 041136 176 VEFLKQDFPGYHN 188 (214)
Q Consensus 176 ~~F~~~~yPgY~~ 188 (214)
.+|| +||.=.|
T Consensus 419 ~~~D--mFP~T~H 429 (431)
T TIGR00479 419 QPVD--MFPHTAH 429 (431)
T ss_pred EEec--cCCCCCC
Confidence 9999 8997555
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.042 Score=45.79 Aligned_cols=130 Identities=15% Similarity=0.178 Sum_probs=80.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
...++.+||-+|=|.=++|..+++..+... ..+++|..++..+ .+++|++.+. ..++.+ ..-|+.++-. .+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~--~v~avD~~~~~~~---~a~~n~~~~g~~~~v~~-~~~d~~~~l~--~~ 108 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETG--KVYAVDKDEKAIN---LTRRNAEKFGVLNNIVL-IKGEAPEILF--TI 108 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHH---HHHHHHHHhCCCCCeEE-EEechhhhHh--hc
Confidence 355778999999877667777887765433 4556665554442 4777887765 234444 3456654321 11
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
...||+|+-+. +.. -+..+++.+..+|+++|.+.+...+ +.+.=.+....++.|+...
T Consensus 109 -~~~~D~V~~~~---~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~~~~ 166 (198)
T PRK00377 109 -NEKFDRIFIGG---GSE----------------KLKEIISASWEIIKKGGRIVIDAIL--LETVNNALSALENIGFNLE 166 (198)
T ss_pred -CCCCCEEEECC---Ccc----------------cHHHHHHHHHHHcCCCcEEEEEeec--HHHHHHHHHHHHHcCCCeE
Confidence 25799999864 110 1345788899999999999775332 1222345556677887544
Q ss_pred E
Q 041136 174 E 174 (214)
Q Consensus 174 ~ 174 (214)
.
T Consensus 167 ~ 167 (198)
T PRK00377 167 I 167 (198)
T ss_pred E
Confidence 3
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.033 Score=48.96 Aligned_cols=130 Identities=22% Similarity=0.296 Sum_probs=65.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+++||+|||+|+ .|+|+|-.. .+.+| |.+|-.+.+.. ..+-.. ++.|.. -.+.-|..+= -|.--.+
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~-~~~~I--~VvDiDeRll~----fI~~~a--~~~gl~i~~~~~DlR~~--LP~~~~~ 111 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTG-LPKRI--TVVDIDERLLD----FINRVA--EEEGLPIEAVHYDLRDP--LPEELRG 111 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT---SEE--EEE-S-HHHHH----HHHHHH--HHHT--EEEE---TTS-----TTTSS
T ss_pred cCCEEEEEcCCcH-HHHHHHhhC-CCCeE--EEEEcCHHHHH----HHHHHH--HHcCCceEEEEeccccc--CCHHHhc
Confidence 5789999999998 355555332 34454 45665555541 111111 222332 2333444431 1222357
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC-EEEEEecCCCC-CCcc-cHhhHHHhcCCEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG-EVHVTLRDDHP-YNQW-NVMGLADKLGLVLK 173 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G-~i~VTl~~~~P-y~~W-~i~~lA~~~gl~l~ 173 (214)
+||+++.+.|-+-. =+.-|+.-+-..|+..| .+.+.+....+ ...| ++.....+.|+.+.
T Consensus 112 ~fD~f~TDPPyT~~-----------------G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 112 KFDVFFTDPPYTPE-----------------GLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp -BSEEEE---SSHH-----------------HHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred CCCEEEeCCCCCHH-----------------HHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 89999999998742 24557777888888655 66666665442 4667 68888889999998
Q ss_pred EEe
Q 041136 174 EKV 176 (214)
Q Consensus 174 ~~~ 176 (214)
+..
T Consensus 175 dii 177 (243)
T PF01861_consen 175 DII 177 (243)
T ss_dssp EEE
T ss_pred HHH
Confidence 843
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.021 Score=39.67 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=62.2
Q ss_pred eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccE
Q 041136 21 RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDV 100 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~ 100 (214)
+||.+|.|.=.++..+++ . ....+++...+. +... .+.++..... ....-+...|+.+... .....||.
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~--~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~d~ 69 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISP--VALE---LARKAAAALL-ADNVEVLKGDAEELPP---EADESFDV 69 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCH--HHHH---HHHHHHhccc-ccceEEEEcChhhhcc---ccCCceEE
Confidence 578999888888877877 2 234555554443 2221 1111111111 1223334566665442 23467999
Q ss_pred EEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 101 IIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 101 IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
|+.|+|.... ......+++.+..+|+++|.+.++
T Consensus 70 i~~~~~~~~~---------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 70 IISDPPLHHL---------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEEccceeeh---------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999987542 345667778888899999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.027 Score=46.79 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred EEecCchhHHHHHHHHhCCC----CcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 24 LVGEGDFSFSDCLARAFGSA----TNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 24 lVGeGnFSFS~sLa~~~~~~----~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+|-|.+---.++......+ ..+...+.|...+..+ .+.+|++...-.+...+...|+++|. +....+|
T Consensus 36 ~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~---~a~~N~~~ag~~~~i~~~~~D~~~l~----~~~~~~d 108 (179)
T PF01170_consen 36 FCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVR---GARENLKAAGVEDYIDFIQWDARELP----LPDGSVD 108 (179)
T ss_dssp T-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHH---HHHHHHHHTT-CGGEEEEE--GGGGG----GTTSBSC
T ss_pred CCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHH---HHHHHHHhcccCCceEEEecchhhcc----cccCCCC
Confidence 48999887776665443210 1223556665554442 57888877655455667778999997 4456899
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.||.|.|. |...+ . -..+++|...|++.++++|++ ..+.||
T Consensus 109 ~IvtnPPy-G~r~~----~---~~~~~~ly~~~~~~~~~~l~~-~~v~l~ 149 (179)
T PF01170_consen 109 AIVTNPPY-GRRLG----S---KKDLEKLYRQFLRELKRVLKP-RAVFLT 149 (179)
T ss_dssp EEEEE--S-TTSHC----H---HHHHHHHHHHHHHHHHCHSTT-CEEEEE
T ss_pred EEEECcch-hhhcc----C---HHHHHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 99999998 32211 1 134588999999999999999 666666
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.035 Score=49.47 Aligned_cols=138 Identities=20% Similarity=0.265 Sum_probs=84.6
Q ss_pred eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccE
Q 041136 21 RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDV 100 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~ 100 (214)
+||=+|-|.=.-|.+|+++.. ..+|+||=... +.+. -|..|++.+.-..+.++.+ |.- . .+.+ +||.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~-~Al~----~A~~Na~~~~l~~~~~~~~-dlf---~--~~~~-~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISP-DALA----LARENAERNGLVRVLVVQS-DLF---E--PLRG-KFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCH-HHHH----HHHHHHHHcCCccEEEEee-ecc---c--ccCC-ceeE
Confidence 799999998888888888764 34677765544 3332 3677777765312223333 322 1 1333 8999
Q ss_pred EEEcCCCCCCCCCCCccc-------HHHH--HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC-C
Q 041136 101 IIFNFPHAGHSPPLSEQD-------TNLI--KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG-L 170 (214)
Q Consensus 101 IiFNFPH~G~~~~~~~~~-------~~~i--~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g-l 170 (214)
||+|.|=+-......... ...+ ..-.++++.|+..+..+|+++|.+.+-+-.++ .=.+.++-.+.| +
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q---~~~v~~~~~~~~~~ 256 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ---GEAVKALFEDTGFF 256 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc---HHHHHHHHHhcCCc
Confidence 999999997641111110 0000 01357899999999999999998877755433 223556666777 4
Q ss_pred EEEE
Q 041136 171 VLKE 174 (214)
Q Consensus 171 ~l~~ 174 (214)
....
T Consensus 257 ~~v~ 260 (280)
T COG2890 257 EIVE 260 (280)
T ss_pred eEEE
Confidence 4333
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=58.04 Aligned_cols=122 Identities=17% Similarity=0.233 Sum_probs=74.9
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+.++..+.+||-||=|.=.++..|++.+. +.-.++.|-.+.+.+ .+.+++.... .++.++.+ |+.++.. .
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P---~~kVtGIDIS~~MLe---~Ararl~~~g-~~ie~I~g-Da~dLp~--~ 482 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETE---DKRIYGIDISENVID---TLKKKKQNEG-RSWNVIKG-DAINLSS--S 482 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCC---CCEEEEEECCHHHHH---HHHHHhhhcC-CCeEEEEc-chHhCcc--c
Confidence 55677789999998555445566887763 355667786555442 3444443221 23333333 7777643 2
Q ss_pred CCCCcccEEEEcCCCCCC--CCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGH--SPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~--~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+..++||.|++|++-.-. ..+..+. ..+.+-+..+++.+..+|++||.+.|.
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~-----~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGK-----KFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccc-----cccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 556789999999753210 0000000 123567888999999999999999886
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.062 Score=48.88 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=84.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++..+||-||=|.=.++..|++.++ .++ |++|..+...+ .+.++++......-..+..-|+.++. +...
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v--~gvD~s~~~i~---~a~~~~~~~g~~~~v~~~~~D~~~~~----~~~~ 185 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANV--KGITLSPVQAA---RANALAAAQGLSDKVSFQVADALNQP----FEDG 185 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEE--EEEECCHHHHH---HHHHHHHhcCCCCceEEEEcCcccCC----CCCC
Confidence 5678999999555556666888773 345 45564333321 23443332211112334445777653 4567
Q ss_pred cccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-cC--CCC----C-----------
Q 041136 97 KFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-RD--DHP----Y----------- 156 (214)
Q Consensus 97 ~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~~--~~P----y----------- 156 (214)
.||.|+.+.- |... ...+|+.+..+|++||.+.|+- +. ..| .
T Consensus 186 ~FD~V~s~~~~~h~~d------------------~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i 247 (340)
T PLN02244 186 QFDLVWSMESGEHMPD------------------KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKI 247 (340)
T ss_pred CccEEEECCchhccCC------------------HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHH
Confidence 8999998643 3221 2367888899999999987652 21 011 0
Q ss_pred ------Ccc----cHhhHHHhcCCEEEEEecCCCCCCCCCc
Q 041136 157 ------NQW----NVMGLADKLGLVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 157 ------~~W----~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 187 (214)
..| .+..+++++||...+...+....-|-|.
T Consensus 248 ~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~~ 288 (340)
T PLN02244 248 CAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWP 288 (340)
T ss_pred HhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHHH
Confidence 012 4567888999998887766655445444
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.07 Score=46.78 Aligned_cols=105 Identities=13% Similarity=0.203 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-||-|.=..+..|++.++ .. .|+.|..+++.+ .+.++... .....+...|++++. +.
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~--~~--v~giD~s~~~~~---~a~~~~~~---~~~i~~~~~D~~~~~----~~ 114 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYG--AH--VHGVDICEKMVN---IAKLRNSD---KNKIEFEANDILKKD----FP 114 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcC--CE--EEEEECCHHHHH---HHHHHcCc---CCceEEEECCcccCC----CC
Confidence 467888999998554334555776653 34 455554333321 23333221 122334456776532 44
Q ss_pred CCcccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.+. .|.+. +-...+|+.+..+|+|||.+.|+
T Consensus 115 ~~~FD~V~s~~~l~h~~~----------------~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSY----------------ADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred CCCeEEEEEhhhHHhCCH----------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 57899999863 45432 11346778899999999999876
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.044 Score=49.45 Aligned_cols=122 Identities=23% Similarity=0.309 Sum_probs=82.8
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecC-ChHHHHhcCccHHHHHHHHHhCCC-EEEEcc-ccccCCCCCCCCCC
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLD-SERTLKTKHWTSQAHLQSLWSRGC-LVLHGV-NVHTMDRHPTLSQM 96 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~V-DAt~L~~~~~~~~~ 96 (214)
..||-||-|.=.-|++|+..++ +.++|..| |...+. -|.+|.+.|+..|. .|.|++ .-.....++ +.-+
T Consensus 150 ~~ildlgtGSGaIslsll~~L~---~~~v~AiD~S~~Ai~----La~eN~qr~~l~g~i~v~~~~me~d~~~~~~-l~~~ 221 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLP---QCTVTAIDVSKAAIK----LAKENAQRLKLSGRIEVIHNIMESDASDEHP-LLEG 221 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCC---CceEEEEeccHHHHH----HHHHHHHHHhhcCceEEEecccccccccccc-cccC
Confidence 3799999998878888887775 67777778 444443 58899999998775 555442 222222332 3456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHH------------hHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKR------------HKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~------------n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+.|.||.|.|-+-... ...-..+ ++. --..+.+|+.-|..+|.++|.+.+.+.
T Consensus 222 ~~dllvsNPPYI~~dD-~~~l~~e-V~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 222 KIDLLVSNPPYIRKDD-NRQLKPE-VRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ceeEEecCCCcccccc-hhhcCch-heecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 7999999999986521 1110001 111 135678999999999999999988876
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.048 Score=52.20 Aligned_cols=155 Identities=15% Similarity=0.151 Sum_probs=95.3
Q ss_pred CccccCcccccc--CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE
Q 041136 3 QKKSNKKVKWIS--HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV 78 (214)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V 78 (214)
|+.+++-.-.+. .=.++.+||=++ =|.=|.. ||..++....|+|.-.+... +. ...+|++.+--.+ .+
T Consensus 96 Qd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~--la~~l~~~g~lvA~D~~~~R-~~----~L~~nl~r~G~~n-v~ 167 (470)
T PRK11933 96 QEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQ--IAALMNNQGAIVANEYSASR-VK----VLHANISRCGVSN-VA 167 (470)
T ss_pred ECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHH--HHHHcCCCCEEEEEeCCHHH-HH----HHHHHHHHcCCCe-EE
Confidence 444444333322 335778887766 5666544 77777544456665544321 11 3456676653222 45
Q ss_pred EEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 79 LHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 79 l~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
+.+-|++++... ....||+|+-+=|+.|.+.-..+. ..+.+.....|=...+.+|..+|++||.+.-+-|+
T Consensus 168 v~~~D~~~~~~~---~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 168 LTHFDGRVFGAA---LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEeCchhhhhhh---chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 666888887642 235699999999999875322221 11233445566678889999999999999888887
Q ss_pred CCC-CCcccHhhHHHhc
Q 041136 153 DHP-YNQWNVMGLADKL 168 (214)
Q Consensus 153 ~~P-y~~W~i~~lA~~~ 168 (214)
=.| -+.-+|..+.+++
T Consensus 245 ~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 245 LNREENQAVCLWLKETY 261 (470)
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 555 3455666655554
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.081 Score=48.61 Aligned_cols=139 Identities=14% Similarity=0.097 Sum_probs=84.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||-|.=.+++.|++.++ +.+++ ..|-.+++.+ .+.++.. ..++.+ ..-|+.++. +...
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~Vt--gVD~S~~mL~---~A~~k~~---~~~i~~-i~gD~e~lp----~~~~ 177 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVT--ILDQSPHQLA---KAKQKEP---LKECKI-IEGDAEDLP----FPTD 177 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEE--EEECCHHHHH---HHHHhhh---ccCCeE-EeccHHhCC----CCCC
Confidence 4578999999776556667888774 23444 5664333332 2333322 124444 344555543 4457
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC---------------CCcccH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP---------------YNQWNV 161 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P---------------y~~W~i 161 (214)
.||.||.+....-.. +. ...|+.+..+|++||.+.|+-.. .| ...-.+
T Consensus 178 sFDvVIs~~~L~~~~-------------d~---~~~L~e~~rvLkPGG~LvIi~~~-~p~~~~~r~~~~~~~~~~t~eEl 240 (340)
T PLN02490 178 YADRYVSAGSIEYWP-------------DP---QRGIKEAYRVLKIGGKACLIGPV-HPTFWLSRFFADVWMLFPKEEEY 240 (340)
T ss_pred ceeEEEEcChhhhCC-------------CH---HHHHHHHHHhcCCCcEEEEEEec-CcchhHHHHhhhhhccCCCHHHH
Confidence 899999875432221 01 13588899999999998665211 11 123345
Q ss_pred hhHHHhcCCEEEEEecCCCCCCCCC
Q 041136 162 MGLADKLGLVLKEKVEFLKQDFPGY 186 (214)
Q Consensus 162 ~~lA~~~gl~l~~~~~F~~~~yPgY 186 (214)
.++++++||...+.....+..|+|-
T Consensus 241 ~~lL~~aGF~~V~i~~i~~~~~~~~ 265 (340)
T PLN02490 241 IEWFTKAGFKDVKLKRIGPKWYRGV 265 (340)
T ss_pred HHHHHHCCCeEEEEEEcChhhcccc
Confidence 6788889999988888777666644
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.089 Score=44.45 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=76.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||.||-|.=+++..|++. + .++ |+.|..+...+ .+.+++..... .+. ++..|+..+.. ....
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~iD~s~~~~~---~a~~~~~~~~~-~~~-~~~~~~~~~~~---~~~~ 113 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL-G--ADV--TGIDASEENIE---VARLHALESGL-KID-YRQTTAEELAA---EHPG 113 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C--CeE--EEEcCCHHHHH---HHHHHHHHcCC-ceE-EEecCHHHhhh---hcCC
Confidence 35788999997665566667764 2 344 44564444331 34444443221 222 34456665532 2346
Q ss_pred cccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-------------------
Q 041136 97 KFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP------------------- 155 (214)
Q Consensus 97 ~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P------------------- 155 (214)
+||.|+.++. |.+. ...+++.+..+|+++|.+.++.....+
T Consensus 114 ~fD~Ii~~~~l~~~~~------------------~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (233)
T PRK05134 114 QFDVVTCMEMLEHVPD------------------PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK 175 (233)
T ss_pred CccEEEEhhHhhccCC------------------HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc
Confidence 8999998643 3221 124678899999999999887532111
Q ss_pred --------CCcccHhhHHHhcCCEEEEE
Q 041136 156 --------YNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 156 --------y~~W~i~~lA~~~gl~l~~~ 175 (214)
++..++.+++.++||.+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 176 GTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred ccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 12335778999999998874
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.035 Score=50.21 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=68.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHH----HHhCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQS----LWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~----L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
.+.++||+||=|+-+.++.|+++- +..+|++.-+|.. -++.++| +.. +..-.++++. -||...-+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~------f~~~~~~~~dpRv~vi~-~Da~~~l~-- 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKF------FPDLAVGFDDPRVNLHI-GDGVEFLK-- 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHh------hhhhccccCCCceEEEE-ChHHHHHh--
Confidence 567899999999999999998763 2345666666653 2333333 322 3333455554 46544211
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
....++||.||-+.+...+. ...-.-..||+.++.+|+++|.+.
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~------------~~~L~t~ef~~~~~~~L~pgGvlv 203 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGP------------AQELFEKPFFESVARALRPGGVVC 203 (308)
T ss_pred hccCCCCCEEEEcCCCCCCc------------hhhhhHHHHHHHHHHhcCCCcEEE
Confidence 12246799999987654321 112235789999999999999873
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.018 Score=55.38 Aligned_cols=136 Identities=14% Similarity=0.073 Sum_probs=88.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CCEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..-+|.||=|+=.|...+|+.+. ..|+++.-.... .....+...+.. |+.++. -|+..+... +.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~--------~~~~~~~~~~~~~l~N~~~~~-~~~~~~~~~--~~ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLN--------GVANVLKLAGEQNITNFLLFP-NNLDLILND--LP 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHH--------HHHHHHHHHHHcCCCeEEEEc-CCHHHHHHh--cC
Confidence 456689999666566666888874 567777644321 112222333332 445544 488766654 67
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..++|.|..|||-.=.|.. =+++|-+=..|+.....+|++||.|++.- |..+|-.|-+..+.+..++....
T Consensus 415 ~~sv~~i~i~FPDPWpKkr--------h~krRl~~~~fl~~~~~~Lk~gG~i~~~T-D~~~y~~~~~~~~~~~~~f~~~~ 485 (506)
T PRK01544 415 NNSLDGIYILFPDPWIKNK--------QKKKRIFNKERLKILQDKLKDNGNLVFAS-DIENYFYEAIELIQQNGNFEIIN 485 (506)
T ss_pred cccccEEEEECCCCCCCCC--------CccccccCHHHHHHHHHhcCCCCEEEEEc-CCHHHHHHHHHHHHhCCCeEecc
Confidence 7889999999998865421 02234445778888899999999998763 34568888777776666677643
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.079 Score=49.86 Aligned_cols=138 Identities=19% Similarity=0.178 Sum_probs=81.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-+|=|.=.||.+||+.. .. .++.|..++..+ .|.+|++.+.-.++ -+..-|+.+.-....+...
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~---~~--V~gvD~s~~al~---~A~~n~~~~~~~~v-~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA---AE--VVGVEGVEAMVE---RARENARRNGLDNV-TFYHANLEEDFTDQPWALG 366 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC---CE--EEEEeCCHHHHH---HHHHHHHHcCCCce-EEEEeChHHhhhhhhhhcC
Confidence 456789888844444555577764 23 456775555442 57778776543333 4445566543211113345
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~~gl~l~~~ 175 (214)
+||.||.|.|..|.. +++.. + .. +++++-|+|+- .|-+ --++..| .+.||.+.+.
T Consensus 367 ~fD~Vi~dPPr~g~~---------------~~~~~-l---~~-~~~~~ivyvSC---np~tlaRDl~~L-~~~gY~l~~i 422 (443)
T PRK13168 367 GFDKVLLDPPRAGAA---------------EVMQA-L---AK-LGPKRIVYVSC---NPATLARDAGVL-VEAGYRLKRA 422 (443)
T ss_pred CCCEEEECcCCcChH---------------HHHHH-H---Hh-cCCCeEEEEEe---ChHHhhccHHHH-hhCCcEEEEE
Confidence 799999999998841 12211 1 11 47777777772 2311 2334434 2579999999
Q ss_pred ecCCCCCCCCCccc
Q 041136 176 VEFLKQDFPGYHNK 189 (214)
Q Consensus 176 ~~F~~~~yPgY~~~ 189 (214)
.||| +||.=.|-
T Consensus 423 ~~~D--mFP~T~Hv 434 (443)
T PRK13168 423 GMLD--MFPHTGHV 434 (443)
T ss_pred EEec--cCCCCCcE
Confidence 9999 89976664
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.093 Score=43.46 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=66.4
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~~~~ 92 (214)
.+..++.+||-+|-|.=.++..+++.+++..+++++..+.. ..+ .+..+.. ..+. ..+...|++.+.
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~--~~~---~a~~~~~---~~~~~~~~~~~d~~~~~---- 82 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA--MLA---LAKERAA---GLGPNVEFVRGDADGLP---- 82 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH--HHH---HHHHHhh---CCCCceEEEecccccCC----
Confidence 45667889999997777778888888754456666655432 221 2333311 1122 333444666543
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+....||.|+.+.-..-.. + ...+++.+..+|+++|.+.+.-
T Consensus 83 ~~~~~~D~v~~~~~~~~~~-------------~---~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLE-------------D---PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCCceEEEEechhhccC-------------C---HHHHHHHHHHHhcCCcEEEEEe
Confidence 3457899999874322110 1 2456778889999999997653
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.013 Score=50.02 Aligned_cols=100 Identities=22% Similarity=0.313 Sum_probs=61.3
Q ss_pred CCCCCCeEEE--EecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILL--VGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILl--VGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
-..++.+||- .|=|-||.. +|++. .+..|+|--.....- ....+|++..+-.+....+.-||.++-.
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~--~ak~~-~~~~V~A~d~Np~a~-----~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--- 166 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLP--IAKHG-KAKRVYAVDLNPDAV-----EYLKENIRLNKVENRIEVINGDAREFLP--- 166 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHH--HHHHT--SSEEEEEES-HHHH-----HHHHHHHHHTT-TTTEEEEES-GGG------
T ss_pred cCCcceEEEEccCCccHHHHH--Hhhhc-CccEEEEecCCHHHH-----HHHHHHHHHcCCCCeEEEEcCCHHHhcC---
Confidence 3567778765 467766666 66643 345688776665432 1356788777766777788999998753
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
...||+||.|.|+... .|+..|..+++++|-+|
T Consensus 167 --~~~~drvim~lp~~~~--------------------~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 --EGKFDRVIMNLPESSL--------------------EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE--TSSGG--------------------GGHHHHHHHEEEEEEEE
T ss_pred --ccccCEEEECChHHHH--------------------HHHHHHHHHhcCCcEEE
Confidence 5789999999999652 36666888889988887
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.069 Score=46.19 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=64.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|=|.=.+|..|++. + .++ |+.|..++..+ .+++++..........+...|+.++.. +...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g--~~v--~~vD~s~~~l~---~a~~~~~~~g~~~~v~~~~~d~~~l~~---~~~~ 111 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-G--HQV--ILCDLSAEMIQ---RAKQAAEAKGVSDNMQFIHCAAQDIAQ---HLET 111 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-C--CEE--EEEECCHHHHH---HHHHHHHhcCCccceEEEEcCHHHHhh---hcCC
Confidence 45679999995555566668775 2 344 55676555442 355555443211112345557776643 2346
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||.|+.+....-.. +. ..++..+..+|+|||.+.|+.
T Consensus 112 ~fD~V~~~~vl~~~~-------------~~---~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 112 PVDLILFHAVLEWVA-------------DP---KSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred CCCEEEehhHHHhhC-------------CH---HHHHHHHHHHcCCCeEEEEEE
Confidence 899999876532110 11 256778889999999997763
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.027 Score=51.35 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=71.9
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhC-CCEEEEccccccCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSR-GCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~-g~~Vl~~VDAt~L~~~~ 91 (214)
.|-....+||=||-|-=--+..|+.... +..++||-.|...- . .|++|++.. .-. .+.++...|...+-..-
T Consensus 110 ~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al-~----~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i 183 (321)
T PRK11727 110 IPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQAL-A----SAQAIISANPGLNGAIRLRLQKDSKAIFKGI 183 (321)
T ss_pred CCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHH-H----HHHHHHHhccCCcCcEEEEEccchhhhhhcc
Confidence 3445678999999994233333444332 46799987775432 2 478888876 222 35555555655544321
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHH---HHHhHH--HHHHHHHHHHhccCCCCEEEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNL---IKRHKN--LLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~---i~~n~~--LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.....+||.||.|.|............... +..|+. -...|=..+.+|+.+||++-+.
T Consensus 184 ~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi 246 (321)
T PRK11727 184 IHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFI 246 (321)
T ss_pred cccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeee
Confidence 113568999999999986532111101000 011111 0122223567888899997444
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.25 Score=42.68 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=79.4
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+.+++.+||-+|=|.=.++..|++..+ .. ..+++|..++..+ ...++.+.. .++..+ .-|++.......+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g--~V~avD~~~~ml~---~l~~~a~~~--~nv~~i-~~D~~~~~~~~~l 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EG--VVYAVEFAPRPMR---ELLEVAEER--KNIIPI-LADARKPERYAHV 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CC--eEEEEECCHHHHH---HHHHHhhhc--CCcEEE-ECCCCCcchhhhc
Confidence 4567889999999665456666888775 22 4555676654432 122233221 355544 3466643211123
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC------CCCCcc--cHhhHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD------HPYNQW--NVMGLA 165 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~------~Py~~W--~i~~lA 165 (214)
. .+||.|+-+.|.. ++ ...+++.+..+|+|||.+.|++... .| ..| +..+..
T Consensus 139 ~-~~~D~i~~d~~~p----------------~~--~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~-~~~~~~~~~~l 198 (226)
T PRK04266 139 V-EKVDVIYQDVAQP----------------NQ--AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP-KEIFKEEIRKL 198 (226)
T ss_pred c-ccCCEEEECCCCh----------------hH--HHHHHHHHHHhcCCCcEEEEEEecccccCcCCH-HHHHHHHHHHH
Confidence 2 4599998554420 01 1235677888999999999975431 11 111 134677
Q ss_pred HhcCCEEEEEecC
Q 041136 166 DKLGLVLKEKVEF 178 (214)
Q Consensus 166 ~~~gl~l~~~~~F 178 (214)
+.+||...+...+
T Consensus 199 ~~aGF~~i~~~~l 211 (226)
T PRK04266 199 EEGGFEILEVVDL 211 (226)
T ss_pred HHcCCeEEEEEcC
Confidence 7889999887654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.028 Score=48.87 Aligned_cols=140 Identities=19% Similarity=0.256 Sum_probs=91.2
Q ss_pred ccccccCCCCC--CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC--EEEEcccc
Q 041136 9 KVKWISHYTNN--QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC--LVLHGVNV 84 (214)
Q Consensus 9 ~~~~~~~~~~~--~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~Vl~~VDA 84 (214)
..+|-.-|.+. .-+|.||=|.=.|-..+|+... ..+.++.-.-. .. ...-++.+.+.|+ .-+...||
T Consensus 37 ~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~--~~------v~~~l~k~~~~~l~Nlri~~~DA 107 (227)
T COG0220 37 PGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRV--PG------VAKALKKIKELGLKNLRLLCGDA 107 (227)
T ss_pred cchHHHHhCCCCCcEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEeh--HH------HHHHHHHHHHcCCCcEEEEcCCH
Confidence 44455556666 3689999777777878898874 56777653322 21 2223455555555 45677899
Q ss_pred ccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhH
Q 041136 85 HTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGL 164 (214)
Q Consensus 85 t~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~l 164 (214)
+.+-.+ .+..++.|+|..|||-.=.|. + =.++|-+=..|++-..++|++||.||+.-- -..|-.|.+...
T Consensus 108 ~~~l~~-~~~~~sl~~I~i~FPDPWpKk----R----H~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD-~~~y~e~~~~~~ 177 (227)
T COG0220 108 VEVLDY-LIPDGSLDKIYINFPDPWPKK----R----HHKRRLTQPEFLKLYARKLKPGGVLHFATD-NEEYFEWMMLEV 177 (227)
T ss_pred HHHHHh-cCCCCCeeEEEEECCCCCCCc----c----ccccccCCHHHHHHHHHHccCCCEEEEEec-CHHHHHHHHHHH
Confidence 988764 233458999999999875432 0 022344557888889999999999988733 345777855544
Q ss_pred HHh
Q 041136 165 ADK 167 (214)
Q Consensus 165 A~~ 167 (214)
...
T Consensus 178 ~~~ 180 (227)
T COG0220 178 LEH 180 (227)
T ss_pred Hhc
Confidence 433
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.085 Score=44.08 Aligned_cols=108 Identities=14% Similarity=0.070 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-+|-|.=.+|..||+. + . .+|++|..++..+ .+.+++....-.++. ....|+..+. +
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~-g--~--~V~gvD~S~~~i~---~a~~~~~~~~~~~v~-~~~~d~~~~~----~- 92 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAAN-G--F--DVTAWDKNPMSIA---NLERIKAAENLDNLH-TAVVDLNNLT----F- 92 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHC-C--C--EEEEEeCCHHHHH---HHHHHHHHcCCCcce-EEecChhhCC----c-
Confidence 4556789999996555566668774 2 2 4566686554442 244443332111222 2234544331 3
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl 150 (214)
...||.|+.++...-. +...+..+++.+..+|++||.+ .++.
T Consensus 93 ~~~fD~I~~~~~~~~~--------------~~~~~~~~l~~i~~~LkpgG~~~~~~~ 135 (197)
T PRK11207 93 DGEYDFILSTVVLMFL--------------EAKTIPGLIANMQRCTKPGGYNLIVAA 135 (197)
T ss_pred CCCcCEEEEecchhhC--------------CHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 3569999988764221 2345678999999999999995 4443
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.11 Score=43.74 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=66.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+++||-||-|.=.++..|++..+... ..++.|..+++.+ .+++|++.+.-.+...+..-|+.+.- ....
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g--~V~~iD~~~~~~~---~a~~~l~~~~~~~~v~~~~~d~~~~~----~~~~ 141 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRG--KVYTVEIVKELAI---YAAQNIERLGYWGVVEVYHGDGKRGL----EKHA 141 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCC--EEEEEeCCHHHHH---HHHHHHHHcCCCCcEEEEECCcccCC----ccCC
Confidence 5678999999777677777888775333 4567776666552 46777776543232334555766432 1235
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
+||+|+.+.+-.. + . ......|++||.+.+.+.+
T Consensus 142 ~fD~Ii~~~~~~~------------~------~----~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 142 PFDAIIVTAAAST------------I------P----SALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred CccEEEEccCcch------------h------h----HHHHHhcCcCcEEEEEEcC
Confidence 8999999865211 1 1 1234678999999887644
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.078 Score=43.74 Aligned_cols=105 Identities=14% Similarity=0.185 Sum_probs=65.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|-|.=.++..+++.++. +.-.++.|..++..+ .+.+++. + ..++. +...|+.++. +...
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~--~~~~~~iD~~~~~~~---~~~~~~~-~-~~~i~-~~~~d~~~~~----~~~~ 105 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPD--RGKVTGVDFSSEMLE---VAKKKSE-L-PLNIE-FIQADAEALP----FEDN 105 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCC--CceEEEEECCHHHHH---HHHHHhc-c-CCCce-EEecchhcCC----CCCC
Confidence 36789999997777777778888742 244566665444331 3444443 1 12333 4457777654 3346
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+||.|+.++--... .-+..+++++..+|++||.+.+.
T Consensus 106 ~~D~i~~~~~~~~~----------------~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 106 SFDAVTIAFGLRNV----------------TDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred cEEEEEEeeeeCCc----------------ccHHHHHHHHHHHcCCCcEEEEE
Confidence 79999987643221 01346789999999999998653
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.13 Score=43.46 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=66.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-+++++||-+|-|.=.++..|++..+... ..++.|..+++.+ .+++|++.+.-.++.++. .|+..... ..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g--~V~~vD~~~~~~~---~A~~~~~~~g~~~v~~~~-~d~~~~~~----~~ 144 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDG--LVVSIERIPELAE---KAERRLRKLGLDNVIVIV-GDGTQGWE----PL 144 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCC--EEEEEeCCHHHHH---HHHHHHHHCCCCCeEEEE-CCcccCCc----cc
Confidence 46788999999777677777888875433 3455565555542 577787776543455444 46654321 23
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
.+||+|+.+.+-... . ......|++||.+.+.+.+
T Consensus 145 ~~fD~Ii~~~~~~~~------------------~----~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 145 APYDRIYVTAAGPKI------------------P----EALIDQLKEGGILVMPVGE 179 (215)
T ss_pred CCCCEEEEcCCcccc------------------c----HHHHHhcCcCcEEEEEEcC
Confidence 579999998653221 1 1134578999999887644
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.1 Score=44.49 Aligned_cols=108 Identities=14% Similarity=0.150 Sum_probs=68.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+..+||-||=|.=.++..|++.+.. .+...|++|..+++.+ .++++++.... ..+.+ ..-|+.++. +
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~-p~~~v~gvD~s~~ml~---~a~~~~~~~~~~~~v~~-~~~d~~~~~----~-- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQ-PNVKIIGIDNSQPMVE---RCRQHIAAYHSEIPVEI-LCNDIRHVE----I-- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCC-CCCeEEEEeCCHHHHH---HHHHHHHhcCCCCCeEE-EECChhhCC----C--
Confidence 46789999996666677778887531 2456778886555542 46666654321 12344 445777653 2
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+|.|+.++.-.-. +..-...+++.+..+|++||.+.++
T Consensus 121 ~~~d~v~~~~~l~~~--------------~~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 121 KNASMVILNFTLQFL--------------PPEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CCCCEEeeecchhhC--------------CHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 248999988752211 0111346788888999999999887
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.015 Score=42.92 Aligned_cols=98 Identities=21% Similarity=0.314 Sum_probs=60.1
Q ss_pred EEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEE
Q 041136 22 ILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVI 101 (214)
Q Consensus 22 ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~I 101 (214)
||-+|=|.=.....|++.+..+.+...++.|-.++..+ .+.++... ....++ ++--|++++. ....+||.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~---~~~~~~~~-~~~~~~-~~~~D~~~l~----~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLE---LAKKRFSE-DGPKVR-FVQADARDLP----FSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHH---HHHHHSHH-TTTTSE-EEESCTTCHH----HHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHH---HHHHhchh-cCCceE-EEECCHhHCc----ccCCCeeEE
Confidence 67888777777777998873223467778885444432 24444443 112344 4677887764 345689999
Q ss_pred EEc---CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC
Q 041136 102 IFN---FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG 144 (214)
Q Consensus 102 iFN---FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G 144 (214)
++. +.|. .++-+..+|++..++|+|+|
T Consensus 72 ~~~~~~~~~~----------------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHL----------------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGS----------------SHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCC----------------CHHHHHHHHHHHHHHhCCCC
Confidence 993 3342 35567888888999999887
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.087 Score=45.51 Aligned_cols=107 Identities=13% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.++.+||-|| .|..+.. |++.+. ..+...|++|..+++.+ .+.++++......-.-++.-|+..+. +
T Consensus 55 ~~~~~vLDlGcGtG~~~~~--l~~~~~-~~~~~v~gvD~S~~ml~---~A~~~~~~~~~~~~v~~~~~d~~~~~----~- 123 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLS--VRRNIH-HDNCKIIAIDNSPAMIE---RCRRHIDAYKAPTPVDVIEGDIRDIA----I- 123 (247)
T ss_pred CCCCEEEEEcccCCHHHHH--HHHhcC-CCCCeEEEEeCCHHHHH---HHHHHHHhcCCCCCeEEEeCChhhCC----C-
Confidence 4678999997 5665544 676432 12466788896555542 46666655432222334556666543 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+|.||.|+...-. +..-...+++.+..+|+|||.+.++
T Consensus 124 -~~~D~vv~~~~l~~l--------------~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 -ENASMVVLNFTLQFL--------------EPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred -CCCCEEehhhHHHhC--------------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 348999998764321 1112356778889999999999776
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.098 Score=46.95 Aligned_cols=134 Identities=17% Similarity=0.242 Sum_probs=78.7
Q ss_pred CCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+||-+| -|.++.. +++..+ +.+|++ .|..+.+.+ .+++|+ .++.+ +.-|+..+. ..
T Consensus 64 ~~grVLDLGcGsGilsl~--la~r~~-~~~V~g--VDisp~al~---~Ar~n~-----~~v~~-v~~D~~e~~-----~~ 124 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFC--MLHRCK-PEKIVC--VELNPEFAR---IGKRLL-----PEAEW-ITSDVFEFE-----SN 124 (279)
T ss_pred cCCeEEEcCCCCCHHHHH--HHHhCC-CCEEEE--EECCHHHHH---HHHHhC-----cCCEE-EECchhhhc-----cc
Confidence 356899987 6666554 665542 235554 454444332 233332 13443 445666542 23
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHh------HHH-HHHHHHHHHhccCCCCEEEEEecCCCCC-----CcccHhh
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRH------KNL-LEAFLKNGREMLGEGGEVHVTLRDDHPY-----NQWNVMG 163 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n------~~L-L~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-----~~W~i~~ 163 (214)
.+||.||.|.|..... ..++. +..+.. ..| +..|++....+|.++|.+.+ +-++.|+ +.=....
T Consensus 125 ~kFDlIIsNPPF~~l~--~~d~~-~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~-~yss~~~y~~sl~~~~y~~ 200 (279)
T PHA03411 125 EKFDVVISNPPFGKIN--TTDTK-DVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF-AYSGRPYYDGTMKSNKYLK 200 (279)
T ss_pred CCCcEEEEcCCccccC--chhhh-hhhhhccCccccccccHHHHHhhhHheecCCceEEE-EEeccccccccCCHHHHHH
Confidence 5799999999998642 22221 111221 233 68999999999999995533 3666663 2334556
Q ss_pred HHHhcCCEEEE
Q 041136 164 LADKLGLVLKE 174 (214)
Q Consensus 164 lA~~~gl~l~~ 174 (214)
+-+.+||++..
T Consensus 201 ~l~~~g~~~~~ 211 (279)
T PHA03411 201 WSKQTGLVTYA 211 (279)
T ss_pred HHHhcCcEecC
Confidence 78888988743
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.12 Score=46.46 Aligned_cols=137 Identities=21% Similarity=0.321 Sum_probs=89.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
..+++++||-+|=|==+.+.=.|+.++ ++|+++++..+ ++. .++ +.+++.|......|- |..+..+.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~-Q~~----~~~---~r~~~~gl~~~v~v~---l~d~rd~~ 135 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEE-QLA----YAE---KRIAARGLEDNVEVR---LQDYRDFE 135 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHH-HHH----HHH---HHHHHcCCCcccEEE---eccccccc
Confidence 568899999999888888877899984 68888887643 322 133 235555655222221 22233344
Q ss_pred CCcccEEEE--cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE--EEEecCCCCC--------------
Q 041136 95 QMKFDVIIF--NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV--HVTLRDDHPY-------------- 156 (214)
Q Consensus 95 ~~~FD~IiF--NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i--~VTl~~~~Py-------------- 156 (214)
.. ||+||. .|=|+|.. =...||+.+..+|+++|.+ |......+|+
T Consensus 136 e~-fDrIvSvgmfEhvg~~----------------~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPg 198 (283)
T COG2230 136 EP-FDRIVSVGMFEHVGKE----------------NYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPG 198 (283)
T ss_pred cc-cceeeehhhHHHhCcc----------------cHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCC
Confidence 33 999987 57777742 2578999999999999997 3222222111
Q ss_pred ----CcccHhhHHHhcCCEEEEEecCCCC
Q 041136 157 ----NQWNVMGLADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 157 ----~~W~i~~lA~~~gl~l~~~~~F~~~ 181 (214)
....|...+.+.|+.+.....|.+.
T Consensus 199 G~lPs~~~i~~~~~~~~~~v~~~~~~~~h 227 (283)
T COG2230 199 GELPSISEILELASEAGFVVLDVESLRPH 227 (283)
T ss_pred CcCCCHHHHHHHHHhcCcEEehHhhhcHH
Confidence 3455667788889988887666544
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.23 Score=44.09 Aligned_cols=107 Identities=12% Similarity=0.191 Sum_probs=66.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.++...+||=||=|.=+++.++++.+. ++.+|.+|..+.+. .+.+|++.....+-.-....|+-+.. +.
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p---~~~~~~~D~~~~~~----~a~~~~~~~gl~~rv~~~~~d~~~~~----~~ 214 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFP---ELDSTILNLPGAID----LVNENAAEKGVADRMRGIAVDIYKES----YP 214 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCC---CCEEEEEecHHHHH----HHHHHHHhCCccceEEEEecCccCCC----CC
Confidence 467889999999666677777999874 46678888743332 35666655432221223344554321 22
Q ss_pred CCcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+|.|+. +..|.- +.+.....|+.+...|+|||.+.|.
T Consensus 215 --~~D~v~~~~~lh~~---------------~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 215 --EADAVLFCRILYSA---------------NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred --CCCEEEeEhhhhcC---------------ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2688764 444432 1223455677788999999999776
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.11 Score=36.48 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=57.3
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|-+|=|.=.++..|++. .+.+++++ |..++..+ .+. +.+...++. +...|++++. +....||.|+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~--D~~~~~~~---~~~---~~~~~~~~~-~~~~d~~~l~----~~~~sfD~v~ 65 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGI--DISEEMLE---QAR---KRLKNEGVS-FRQGDAEDLP----FPDNSFDVVF 65 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEE--ES-HHHHH---HHH---HHTTTSTEE-EEESBTTSSS----S-TT-EEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEE--eCCHHHHH---HHH---hcccccCch-heeehHHhCc----cccccccccc
Confidence 56777777777778887 33455555 43333221 111 222333444 7777888873 6678999999
Q ss_pred EcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 103 FNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 103 FNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.+.=.. +-+-...+++.+..+|+++|.+.|
T Consensus 66 ~~~~~~----------------~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 66 SNSVLH----------------HLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EESHGG----------------GSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccee----------------eccCHHHHHHHHHHHcCcCeEEeC
Confidence 875321 113456788889999999999865
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.11 Score=48.27 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++++||-||=|.=.++..+++.++ ..|+++.+. ++.+. .+.++++. .++.+. ..|+..+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS-~~~l~----~A~~~~~~---l~v~~~-~~D~~~l------- 225 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTIS-AEQQK----LAQERCAG---LPVEIR-LQDYRDL------- 225 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCC-HHHHH----HHHHHhcc---CeEEEE-ECchhhc-------
Confidence 346788999999766667777888764 355544333 23322 34444432 223322 2344433
Q ss_pred CCcccEEEEc--CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFN--FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFN--FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...||.|+.+ |-|+|.. -+..+|+.+..+|+|||.+.+.
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~----------------~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPK----------------NYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred CCCCCEEEEeCchhhCChH----------------HHHHHHHHHHHHcCCCcEEEEE
Confidence 3579999865 4566531 2446888999999999998765
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.11 Score=45.46 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=69.8
Q ss_pred CCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.+||=|| .||+++. |++..+ +--+|..|..+.+++ .+.+-+..+.-.+ .-+..-||.+|. |..
T Consensus 51 ~g~~vLDva~GTGd~a~~--~~k~~g---~g~v~~~D~s~~ML~---~a~~k~~~~~~~~-i~fv~~dAe~LP----f~D 117 (238)
T COG2226 51 PGDKVLDVACGTGDMALL--LAKSVG---TGEVVGLDISESMLE---VAREKLKKKGVQN-VEFVVGDAENLP----FPD 117 (238)
T ss_pred CCCEEEEecCCccHHHHH--HHHhcC---CceEEEEECCHHHHH---HHHHHhhccCccc-eEEEEechhhCC----CCC
Confidence 789998876 8888776 899886 456677885555442 3444344333334 445566999885 888
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.+||+|...|=- || -.=....++.+..+|+|||++.|. --.+|
T Consensus 118 ~sFD~vt~~fgl---------rn-------v~d~~~aL~E~~RVlKpgG~~~vl-e~~~p 160 (238)
T COG2226 118 NSFDAVTISFGL---------RN-------VTDIDKALKEMYRVLKPGGRLLVL-EFSKP 160 (238)
T ss_pred CccCEEEeeehh---------hc-------CCCHHHHHHHHHHhhcCCeEEEEE-EcCCC
Confidence 999999886622 11 112334456678999999976554 33344
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.25 Score=44.38 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=78.0
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-+|=|.=.|++.||+. +.. +++.|..++..+ .+.+|++.+.-.++.+ ...|+.++... . ...|
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~---~~~--V~gvD~s~~av~---~A~~n~~~~~l~~v~~-~~~D~~~~~~~--~-~~~~ 241 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP---GMQ--LTGIEISAEAIA---CAKQSAAELGLTNVQF-QALDSTQFATA--Q-GEVP 241 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc---CCE--EEEEeCCHHHHH---HHHHHHHHcCCCceEE-EEcCHHHHHHh--c-CCCC
Confidence 578988875555556667773 224 456664444432 5777877664323433 45677665321 1 2369
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHhcCCEEEEEec
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~~gl~l~~~~~ 177 (214)
|.||.|.|..|... .+ .++|.. +.+++-|+|+ |+ |.. --++..+ .||.+.+..+
T Consensus 242 D~Vv~dPPr~G~~~--------~~---~~~l~~--------~~~~~ivyvs-c~--p~t~~rd~~~l---~~y~~~~~~~ 296 (315)
T PRK03522 242 DLVLVNPPRRGIGK--------EL---CDYLSQ--------MAPRFILYSS-CN--AQTMAKDLAHL---PGYRIERVQL 296 (315)
T ss_pred eEEEECCCCCCccH--------HH---HHHHHH--------cCCCeEEEEE-CC--cccchhHHhhc---cCcEEEEEEE
Confidence 99999999887521 01 111211 3555555665 33 211 2234444 6999999999
Q ss_pred CCCCCCCCCcccc
Q 041136 178 FLKQDFPGYHNKR 190 (214)
Q Consensus 178 F~~~~yPgY~~~r 190 (214)
|| +||.=.|-.
T Consensus 297 ~D--mFP~T~HvE 307 (315)
T PRK03522 297 FD--MFPHTAHYE 307 (315)
T ss_pred ec--cCCCCCeEE
Confidence 99 899877643
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.14 Score=42.77 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=59.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~~~~~~ 96 (214)
...+||-+|-|.=.+|..||+. + ..| |++|..++..+ .+.++.+ ..|+.+ ....|+... .+ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~-g--~~V--~~iD~s~~~l~---~a~~~~~---~~~~~v~~~~~d~~~~----~~-~~ 93 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA-G--YDV--RAWDHNPASIA---SVLDMKA---RENLPLRTDAYDINAA----AL-NE 93 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC-C--CeE--EEEECCHHHHH---HHHHHHH---HhCCCceeEeccchhc----cc-cC
Confidence 4579999997776677778874 2 344 55675444442 1333332 223331 122333322 12 24
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
+||.|+.+++..-. +...+..+++.+..+|++||.+.|
T Consensus 94 ~fD~I~~~~~~~~~--------------~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 94 DYDFIFSTVVFMFL--------------QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCCEEEEecccccC--------------CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 69999988764321 233566788999999999999533
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.11 Score=44.11 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=63.7
Q ss_pred CCCCCCeEEEEecCchhHHH-HHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSD-CLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~-sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
....+.+||-+|=|.=+++. +|++. +. -+++.|...+..+ .+.+|++.+.-.++.+ +.-|+.+.-..
T Consensus 50 ~~~~~~~vLDl~~GsG~l~l~~lsr~---a~--~V~~vE~~~~a~~---~a~~Nl~~~~~~~v~~-~~~D~~~~l~~--- 117 (199)
T PRK10909 50 PVIVDARCLDCFAGSGALGLEALSRY---AA--GATLLEMDRAVAQ---QLIKNLATLKAGNARV-VNTNALSFLAQ--- 117 (199)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHcC---CC--EEEEEECCHHHHH---HHHHHHHHhCCCcEEE-EEchHHHHHhh---
Confidence 33567899988744334443 24432 22 3556676555542 5778888775334444 44576542111
Q ss_pred CCCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 94 SQMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 94 ~~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
....||.|++|.| +.|. ..+++.... ...+|.++|-|+|.+..
T Consensus 118 ~~~~fDlV~~DPPy~~g~--------------~~~~l~~l~--~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 118 PGTPHNVVFVDPPFRKGL--------------LEETINLLE--DNGWLADEALIYVESEV 161 (199)
T ss_pred cCCCceEEEECCCCCCCh--------------HHHHHHHHH--HCCCcCCCcEEEEEecC
Confidence 1346999999999 4442 233444332 24678898888888543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.28 Score=44.66 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+.+||-||=|.=-++..|++. + ...|++|..++..+ .+..+.+.... .++. +...|+.++. +..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g----~~V~GID~s~~~i~---~Ar~~~~~~~~~~~i~-~~~~dae~l~----~~~~ 197 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-G----ATVTGVDAVDKNVK---IARLHADMDPVTSTIE-YLCTTAEKLA----DEGR 197 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-C----CEEEEEeCCHHHHH---HHHHHHHhcCccccee-EEecCHHHhh----hccC
Confidence 4579999994444456667753 2 24578886665542 23333222111 1233 3445676653 2356
Q ss_pred cccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC------------------CC-
Q 041136 97 KFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD------------------HP- 155 (214)
Q Consensus 97 ~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~------------------~P- 155 (214)
+||.|+... -|+.. ...|++....+|+|||.+.|+--+. .|
T Consensus 198 ~FD~Vi~~~vLeHv~d------------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~ 259 (322)
T PLN02396 198 KFDAVLSLEVIEHVAN------------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK 259 (322)
T ss_pred CCCEEEEhhHHHhcCC------------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC
Confidence 899999854 23321 2468888899999999998873211 11
Q ss_pred -CCcc-------cHhhHHHhcCCEEEEE
Q 041136 156 -YNQW-------NVMGLADKLGLVLKEK 175 (214)
Q Consensus 156 -y~~W-------~i~~lA~~~gl~l~~~ 175 (214)
...| .+..+.+++|+.+.+.
T Consensus 260 gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 260 GTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 1223 3677888899988775
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=1 Score=40.66 Aligned_cols=135 Identities=14% Similarity=0.176 Sum_probs=79.8
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
++.++.++||-+|=|.=+|+..|++..+....|+|.-+. +++.+ .-++.. +..++..+. -|++...++..
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s--~r~~~------dLl~~ak~r~NI~~I~-~Da~~p~~y~~ 198 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFS--HRSGR------DLTNMAKKRPNIVPII-EDARYPQKYRM 198 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECc--HHHHH------HHHHHhhhcCCCEEEE-CCccChhhhhc
Confidence 467889999999977767777799988755567776433 22111 001111 114565544 37765332222
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC-----CC----CCcccHhh
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD-----HP----YNQWNVMG 163 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~-----~P----y~~W~i~~ 163 (214)
+. ..||+|+.+.... ++. +.++ ..|..+|+++|.+.|.++.. .| +. +.+ +
T Consensus 199 ~~-~~vDvV~~Dva~p-------dq~-------~il~----~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~-~ev-~ 257 (293)
T PTZ00146 199 LV-PMVDVIFADVAQP-------DQA-------RIVA----LNAQYFLKNGGHFIISIKANCIDSTAKPEVVFA-SEV-Q 257 (293)
T ss_pred cc-CCCCEEEEeCCCc-------chH-------HHHH----HHHHHhccCCCEEEEEEeccccccCCCHHHHHH-HHH-H
Confidence 22 3699999988521 110 1122 23788899999998875532 12 12 334 5
Q ss_pred HHHhcCCEEEEEecC
Q 041136 164 LADKLGLVLKEKVEF 178 (214)
Q Consensus 164 lA~~~gl~l~~~~~F 178 (214)
..++.||...+.+..
T Consensus 258 ~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 258 KLKKEGLKPKEQLTL 272 (293)
T ss_pred HHHHcCCceEEEEec
Confidence 567889998876654
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.026 Score=49.24 Aligned_cols=134 Identities=16% Similarity=0.204 Sum_probs=79.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.++||++|=|+-+-++.|.++. +...|++.-+|..- ++.++|-.....- ++.-.++|++ -||...-+. ...
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~-~Dg~~~l~~--~~~ 148 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIII-GDGRKFLKE--TQE 148 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEE-STHHHHHHT--SSS
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEE-hhhHHHHHh--ccC
Confidence 478999999999998888888764 23467766666542 4444442111111 4444566644 466542221 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC----CcccHhhHHHhcCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY----NQWNVMGLADKLGL 170 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py----~~W~i~~lA~~~gl 170 (214)
++||.||-+-+...+.. .+ ..-..||+.++..|+++|-+.+-. +.|+ ..+.+....+...-
T Consensus 149 ~~yDvIi~D~~dp~~~~-----------~~-l~t~ef~~~~~~~L~~~Gv~v~~~--~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPA-----------PN-LFTREFYQLCKRRLKPDGVLVLQA--GSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp T-EEEEEEESSSTTSCG-----------GG-GSSHHHHHHHHHHEEEEEEEEEEE--EETTTTHHHHHHHHHHHHTTSS
T ss_pred CcccEEEEeCCCCCCCc-----------cc-ccCHHHHHHHHhhcCCCcEEEEEc--cCcccchHHHHHHHHHHHHhCC
Confidence 28999999988733211 12 356899999999999999987765 2332 33445544444444
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.14 Score=48.03 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=90.8
Q ss_pred ccccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecC-ChHHHHhcCccHHHHHHHHHhCCC-EEEEcccccc
Q 041136 11 KWISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLD-SERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHT 86 (214)
Q Consensus 11 ~~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~d-s~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~ 86 (214)
+++..+-.++++|=|= .|.||-.+|++ .+.. .|+.| |...|. -|++|.+...-.+. .-+..-||=+
T Consensus 210 ~~l~~~~~GkrvLNlFsYTGgfSv~Aa~g----GA~~--vt~VD~S~~al~----~a~~N~~LNg~~~~~~~~i~~Dvf~ 279 (393)
T COG1092 210 RALGELAAGKRVLNLFSYTGGFSVHAALG----GASE--VTSVDLSKRALE----WARENAELNGLDGDRHRFIVGDVFK 279 (393)
T ss_pred HHHhhhccCCeEEEecccCcHHHHHHHhc----CCCc--eEEEeccHHHHH----HHHHHHHhcCCCccceeeehhhHHH
Confidence 3445555588888653 67776665543 2222 45667 444443 47777765432222 2344455544
Q ss_pred CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc----Hh
Q 041136 87 MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN----VM 162 (214)
Q Consensus 87 L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~----i~ 162 (214)
.-+...-++.+||.||.+.|-.+...... -+..+.+..|+ .-|.++|+++|.+.+..|... ...=. |.
T Consensus 280 ~l~~~~~~g~~fDlIilDPPsF~r~k~~~---~~~~rdy~~l~----~~~~~iL~pgG~l~~~s~~~~-~~~~~f~~~i~ 351 (393)
T COG1092 280 WLRKAERRGEKFDLIILDPPSFARSKKQE---FSAQRDYKDLN----DLALRLLAPGGTLVTSSCSRH-FSSDLFLEIIA 351 (393)
T ss_pred HHHHHHhcCCcccEEEECCcccccCcccc---hhHHHHHHHHH----HHHHHHcCCCCEEEEEecCCc-cCHHHHHHHHH
Confidence 32221224679999999999998643211 12223444444 448899999999988877744 33322 33
Q ss_pred hHHHhcCCEEEEE-ecCCCCCCCCCc
Q 041136 163 GLADKLGLVLKEK-VEFLKQDFPGYH 187 (214)
Q Consensus 163 ~lA~~~gl~l~~~-~~F~~~~yPgY~ 187 (214)
..|...|...+.. ..-.+.++|...
T Consensus 352 ~a~~~~~~~~~~~~~~~~~~D~p~~~ 377 (393)
T COG1092 352 RAAAAAGRRAQEIEGEGQPPDHPRNA 377 (393)
T ss_pred HHHHhcCCcEEEeeccCCCCCccccc
Confidence 4555566655554 455666666554
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.34 Score=40.44 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=76.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC--EEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC--LVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+||-+|-|.=+++..+++.. ..++ +.|....+.. .+.+++.. .+. .-+...|+.++... ..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~--~iD~s~~~~~---~a~~~~~~---~~~~~~~~~~~d~~~~~~~---~~ 110 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVT--GIDASEENIE---VAKLHAKK---DPLLKIEYRCTSVEDLAEK---GA 110 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEE--EEeCCHHHHH---HHHHHHHH---cCCCceEEEeCCHHHhhcC---CC
Confidence 37799999976655666676643 2344 4554333321 23333332 232 22233455544321 14
Q ss_pred CcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC------------------
Q 041136 96 MKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP------------------ 155 (214)
Q Consensus 96 ~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P------------------ 155 (214)
.+||.|+.++. |+. -...+++++..+|+++|.+.++.....+
T Consensus 111 ~~~D~i~~~~~l~~~~------------------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR01983 111 KSFDVVTCMEVLEHVP------------------DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVP 172 (224)
T ss_pred CCccEEEehhHHHhCC------------------CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCC
Confidence 68999998642 221 1246788899999999999887532210
Q ss_pred --------C-CcccHhhHHHhcCCEEEEEecCCCCCCCCCc
Q 041136 156 --------Y-NQWNVMGLADKLGLVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 156 --------y-~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 187 (214)
+ +.=++.++++.+|+.+.+...+. |+.+.
T Consensus 173 ~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~~~---~~~~~ 210 (224)
T TIGR01983 173 KGTHDWEKFIKPSELTSWLESAGLRVKDVKGLV---YNPIK 210 (224)
T ss_pred CCcCChhhcCCHHHHHHHHHHcCCeeeeeeeEE---eehhh
Confidence 1 11136678888898887754332 44444
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.12 Score=49.10 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=79.2
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|..|=|+||.. ||+.. ..++++-...+.. . .|+.|++.+.-.+ .-+.--||.++-.. ......+|.||
T Consensus 300 lYCGvG~f~l~--lA~~~---~~V~gvEi~~~aV-~----~A~~NA~~n~i~N-~~f~~~~ae~~~~~-~~~~~~~d~Vv 367 (432)
T COG2265 300 LYCGVGTFGLP--LAKRV---KKVHGVEISPEAV-E----AAQENAAANGIDN-VEFIAGDAEEFTPA-WWEGYKPDVVV 367 (432)
T ss_pred eccCCChhhhh--hcccC---CEEEEEecCHHHH-H----HHHHHHHHcCCCc-EEEEeCCHHHHhhh-ccccCCCCEEE
Confidence 78899999888 55543 4677776654332 2 5888998887666 34444566665542 12456899999
Q ss_pred EcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEecCCCCC
Q 041136 103 FNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVEFLKQD 182 (214)
Q Consensus 103 FNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~~F~~~~ 182 (214)
.+.|-.|.. ++++. ...+ +.+..-|+|+ | .|-+.=.=...-...|+.+.+.-+|| +
T Consensus 368 vDPPR~G~~--------------~~~lk----~l~~-~~p~~IvYVS-C--NP~TlaRDl~~L~~~gy~i~~v~~~D--m 423 (432)
T COG2265 368 VDPPRAGAD--------------REVLK----QLAK-LKPKRIVYVS-C--NPATLARDLAILASTGYEIERVQPFD--M 423 (432)
T ss_pred ECCCCCCCC--------------HHHHH----HHHh-cCCCcEEEEe-C--CHHHHHHHHHHHHhCCeEEEEEEEec--c
Confidence 999999973 11211 1111 2455556776 2 23221111122234578899999999 8
Q ss_pred CCCCcc
Q 041136 183 FPGYHN 188 (214)
Q Consensus 183 yPgY~~ 188 (214)
||.=+|
T Consensus 424 FP~T~H 429 (432)
T COG2265 424 FPHTHH 429 (432)
T ss_pred CCCccc
Confidence 887666
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.26 Score=42.53 Aligned_cols=101 Identities=21% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++... .. ..|+.|..+.+.+ .+ ++.++.++ ..|+..+. .
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~--~v~gvD~s~~~~~---~a-------~~~~~~~~-~~d~~~~~-----~ 86 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWP-GA--VIEALDSSPEMVA---AA-------RERGVDAR-TGDVRDWK-----P 86 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCC-CC--EEEEEECCHHHHH---HH-------HhcCCcEE-EcChhhCC-----C
Confidence 456778999998433344555887763 23 3577776554432 12 22355543 35776552 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...||.|+.|+...=.. + ...+++.+..+|+|||.+.++.
T Consensus 87 ~~~fD~v~~~~~l~~~~----d------------~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 87 KPDTDVVVSNAALQWVP----E------------HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CCCceEEEEehhhhhCC----C------------HHHHHHHHHHhCCCCcEEEEEc
Confidence 35799999999743211 0 1345667789999999998874
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.18 Score=44.31 Aligned_cols=106 Identities=10% Similarity=0.089 Sum_probs=61.3
Q ss_pred CCeEEEEecCchhHHHHHHHHhC--CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFSDCLARAFG--SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~--~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+||-+|=|.=.++.++++... ...+|+|.-+|....- .+..|+. ++. ++.-|+.... + ..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~-----~Ar~n~~-----~~~-~~~~D~~~~~----~-~~ 113 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK-----LGKRIVP-----EAT-WINADALTTE----F-DT 113 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH-----HHHhhcc-----CCE-EEEcchhccc----c-cC
Confidence 57999999777788888888643 2235555555543221 2444432 233 4445665322 2 35
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG 144 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G 144 (214)
+||.||-|.|..-...... ..+ ...-.+...|++.|.+|+++|+
T Consensus 114 ~FDlIIsNPPY~~~~~~d~-~ar---~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 114 LFDMAISNPPFGKIKTSDF-KGK---YTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred CccEEEECCCCCCcccccc-CCc---ccccHHHHHHHHHHHHHcCCCE
Confidence 7999999999984321110 000 1123466778999998666554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.3 Score=45.93 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=77.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.+.+||-||=|.=..+..|++.++ .. +|++|..++..+ .|..|...+. ....+...|+..+. +..
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~--v~gvDiS~~~l~---~A~~~~~~~~--~~v~~~~~d~~~~~----~~~ 330 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFD--VH--VVGIDLSVNMIS---FALERAIGRK--CSVEFEVADCTKKT----YPD 330 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcC--CE--EEEEECCHHHHH---HHHHHhhcCC--CceEEEEcCcccCC----CCC
Confidence 46788999999666566677888763 34 455664333331 3444543221 11223345666542 344
Q ss_pred CcccEEEEc--CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---CCCCC--------------
Q 041136 96 MKFDVIIFN--FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---DDHPY-------------- 156 (214)
Q Consensus 96 ~~FD~IiFN--FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~~~Py-------------- 156 (214)
.+||.|+.. +-|+.. ...+++.+..+|+|||.+.|+-. .+.|.
T Consensus 331 ~~fD~I~s~~~l~h~~d------------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 392 (475)
T PLN02336 331 NSFDVIYSRDTILHIQD------------------KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDL 392 (475)
T ss_pred CCEEEEEECCcccccCC------------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCC
Confidence 689999986 445431 12567888999999999987632 11221
Q ss_pred -CcccHhhHHHhcCCEEEEEec
Q 041136 157 -NQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 157 -~~W~i~~lA~~~gl~l~~~~~ 177 (214)
..=.+..+.+++||.......
T Consensus 393 ~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 393 HDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred CCHHHHHHHHHHCCCeeeeeec
Confidence 111245677778888775443
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.68 Score=43.96 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=88.6
Q ss_pred chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCC
Q 041136 29 DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHA 108 (214)
Q Consensus 29 nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~ 108 (214)
-=|+-+||.+.-| .|+|- |....-.+ .-..|+..|- ..-+|.-+-|...+... .+-+ +||||.-+=|+.
T Consensus 255 KTt~IAalMkn~G---~I~An--D~n~~r~~---~l~~n~~rlG-v~ntiv~n~D~~ef~~~-~~~~-~fDRVLLDAPCS 323 (460)
T KOG1122|consen 255 KTTHIAALMKNTG---VIFAN--DSNENRLK---SLKANLHRLG-VTNTIVSNYDGREFPEK-EFPG-SFDRVLLDAPCS 323 (460)
T ss_pred hHHHHHHHHcCCc---eEEec--ccchHHHH---HHHHHHHHhC-CCceEEEccCccccccc-ccCc-ccceeeecCCCC
Confidence 3356666655443 45553 43221110 1234444443 12356667777755432 2434 899999999999
Q ss_pred CCCCCCCccc------HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-CCcccHhhHHHhc-CCEEEEEecCC
Q 041136 109 GHSPPLSEQD------TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-YNQWNVMGLADKL-GLVLKEKVEFL 179 (214)
Q Consensus 109 G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-y~~W~i~~lA~~~-gl~l~~~~~F~ 179 (214)
|.+-+.+++. ...+.....|=+..|.||.+++++||.+..+-|.-.| -+.|.|..+.++. .+.|....++-
T Consensus 324 Gtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~~~~i 402 (460)
T KOG1122|consen 324 GTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPTGLDI 402 (460)
T ss_pred CCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccccccC
Confidence 9654444432 2345667778888899999999999999888887555 5789888866665 78877765543
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.28 Score=42.07 Aligned_cols=104 Identities=15% Similarity=0.259 Sum_probs=63.2
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+..+..+||-||-|.=.++..|++.++ +.++ ++.|..+++.+ .+.+++ .++. +...|+..+.
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v--~gvD~s~~~i~---~a~~~~-----~~~~-~~~~d~~~~~----- 89 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWP-AARI--TGIDSSPAMLA---EARSRL-----PDCQ-FVEADIASWQ----- 89 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEE--EEEECCHHHHH---HHHHhC-----CCCe-EEECchhccC-----
Confidence 3557789999999555455666887763 3344 55565444432 233222 1233 3445666542
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.|+.|+...-.. + ...+++.+..+|++||.+.++.
T Consensus 90 ~~~~fD~v~~~~~l~~~~----d------------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 PPQALDLIFANASLQWLP----D------------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCCccEEEEccChhhCC----C------------HHHHHHHHHHhcCCCcEEEEEC
Confidence 234799999997643221 1 1246777888999999998875
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.24 Score=47.52 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=47.3
Q ss_pred CCeEEE--EecCchhHHHHHHHHhC-----CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 19 NQRILL--VGEGDFSFSDCLARAFG-----SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 19 ~~~ILl--VGeGnFSFS~sLa~~~~-----~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
..+||= +|.|.|.-+ +++... ....+-.++.|..+++. +.+..|+..+...+..|..+---.......
T Consensus 32 ~~~ilDP~cGsG~fl~~--~~~~~~~~~~~~~~~~~i~g~DId~~a~---~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~ 106 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAA--LLKKNEEINYFKEVELNIYFADIDKTLL---KRAKKLLGEFALLEINVINFNSLSYVLLNI 106 (524)
T ss_pred ceEEEeCCCCccHHHHH--HHHHHHhcCCcccceeeeeeechhHHHH---HHHHHHHhhcCCCCceeeeccccccccccc
Confidence 346654 568888666 444331 12346667778666655 246667766653344433221011100000
Q ss_pred CCCCCcccEEEEcCCCCCCC
Q 041136 92 TLSQMKFDVIIFNFPHAGHS 111 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~ 111 (214)
.-....||.||-|.|-...+
T Consensus 107 ~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 107 ESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred ccccCcccEEEeCCCccccC
Confidence 01125799999999999864
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.24 Score=41.16 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=60.4
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-||-|.=+++..|++... ... .++.|...+..+ .+..++. .++. +...|++.+. +...+|
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~--~~~~D~~~~~~~---~~~~~~~----~~~~-~~~~d~~~~~----~~~~~f 99 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAE--FIALDISAGMLA---QAKTKLS----ENVQ-FICGDAEKLP----LEDSSF 99 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCc--EEEEeChHHHHH---HHHHhcC----CCCe-EEecchhhCC----CCCCce
Confidence 47899999665556666888753 233 455564443331 1222111 1233 3345666543 345679
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
|.||.++...-.. -...++..+..+|+++|.+.++.
T Consensus 100 D~vi~~~~l~~~~----------------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 100 DLIVSNLALQWCD----------------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred eEEEEhhhhhhcc----------------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999987543211 12357888999999999998763
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.12 Score=45.10 Aligned_cols=113 Identities=16% Similarity=0.259 Sum_probs=71.1
Q ss_pred CeEEEEecC---chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 20 QRILLVGEG---DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 20 ~~ILlVGeG---nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
-.+|.||=| ||-|- .-......|++|+.+-+. +| +..-+.+-+-..+.-+.--|+.+|.+ +...
T Consensus 78 ~~vLEvgcGtG~Nfkfy-------~~~p~~svt~lDpn~~me-e~--~~ks~~E~k~~~~~~fvva~ge~l~~---l~d~ 144 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFY-------PWKPINSVTCLDPNEKME-EI--ADKSAAEKKPLQVERFVVADGENLPQ---LADG 144 (252)
T ss_pred cceEEecccCCCCcccc-------cCCCCceEEEeCCcHHHH-HH--HHHHHhhccCcceEEEEeechhcCcc---cccC
Confidence 347999954 77764 212467889999876554 23 22222222333444344446666654 7889
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecCCCCCCcccHh
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRDDHPYNQWNVM 162 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~~Py~~W~i~ 162 (214)
++|.||--|=-+.... + .+- +...+.+|+|||.| ++-+..|+ |..||-.
T Consensus 145 s~DtVV~TlvLCSve~----~--------~k~----L~e~~rlLRpgG~iifiEHva~~-y~~~n~i 194 (252)
T KOG4300|consen 145 SYDTVVCTLVLCSVED----P--------VKQ----LNEVRRLLRPGGRIIFIEHVAGE-YGFWNRI 194 (252)
T ss_pred CeeeEEEEEEEeccCC----H--------HHH----HHHHHHhcCCCcEEEEEeccccc-chHHHHH
Confidence 9999998887766531 1 112 23457899999997 77777766 9998833
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.11 Score=45.05 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.-.++.+||=|| .|++++. |++..++ +-..++.|-.+++.+ .+.+.+....... .-+..-||++|.
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~--l~~~~~~--~~~v~~vD~s~~ML~---~a~~k~~~~~~~~-i~~v~~da~~lp---- 111 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRE--LARRVGP--NGKVVGVDISPGMLE---VARKKLKREGLQN-IEFVQGDAEDLP---- 111 (233)
T ss_dssp T--S--EEEEET-TTSHHHHH--HGGGSS-----EEEEEES-HHHHH---HHHHHHHHTT--S-EEEEE-BTTB------
T ss_pred CCCCCCEEEEeCCChHHHHHH--HHHHCCC--ccEEEEecCCHHHHH---HHHHHHHhhCCCC-eeEEEcCHHHhc----
Confidence 456678998877 7777666 7887754 346677885555442 3554444432222 334556898885
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+...+||.|..-| |.. | -.-....++.+..+|+|||.+.|.
T Consensus 112 ~~d~sfD~v~~~f---glr------n-------~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 112 FPDNSFDAVTCSF---GLR------N-------FPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp S-TT-EEEEEEES----GG------G--------SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCceeEEEHHh---hHH------h-------hCCHHHHHHHHHHHcCCCeEEEEe
Confidence 5678999999766 221 1 001233567788999999998654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.4 Score=38.05 Aligned_cols=119 Identities=20% Similarity=0.229 Sum_probs=68.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|-|.=-.+.++++ .+. ..++| .|..+... ..+.+|++.. |+... ++ +.. ...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~-~g~-~~v~g--iDis~~~l---~~A~~n~~~~---~~~~~--~~---~~~----~~~ 178 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAK-LGA-KKVLA--VDIDPQAV---EAARENAELN---GVELN--VY---LPQ----GDL 178 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHH-cCC-CeEEE--EECCHHHH---HHHHHHHHHc---CCCce--EE---Ecc----CCC
Confidence 4678999999776333333333 442 34554 45444333 1466666542 33111 11 111 112
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
+||.|+.|.. ...+..++..+..+|++||.+.++-.. ..+.-.+.....+.|+.+.+.
T Consensus 179 ~fD~Vvani~-------------------~~~~~~l~~~~~~~LkpgG~lilsgi~--~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 179 KADVIVANIL-------------------ANPLLELAPDLARLLKPGGRLILSGIL--EEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred CcCEEEEcCc-------------------HHHHHHHHHHHHHhcCCCcEEEEEECc--HhhHHHHHHHHHHCCCEEEEE
Confidence 7999998842 113456777888999999999887111 123445677788899988763
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.014 Score=52.50 Aligned_cols=153 Identities=23% Similarity=0.290 Sum_probs=75.2
Q ss_pred cccccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEcccccc
Q 041136 10 VKWISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHT 86 (214)
Q Consensus 10 ~~~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~ 86 (214)
++|+..+..+++||=+= .|.||-+ -..+.+. -+|+.|..+...+ -+++|++.+.-. ...-+..-||-+
T Consensus 115 R~~v~~~~~gkrvLnlFsYTGgfsv~----Aa~gGA~--~v~~VD~S~~al~---~a~~N~~lNg~~~~~~~~~~~Dvf~ 185 (286)
T PF10672_consen 115 RKWVRKYAKGKRVLNLFSYTGGFSVA----AAAGGAK--EVVSVDSSKRALE---WAKENAALNGLDLDRHRFIQGDVFK 185 (286)
T ss_dssp HHHHHHHCTTCEEEEET-TTTHHHHH----HHHTTES--EEEEEES-HHHHH---HHHHHHHHTT-CCTCEEEEES-HHH
T ss_pred HHHHHHHcCCCceEEecCCCCHHHHH----HHHCCCC--EEEEEeCCHHHHH---HHHHHHHHcCCCccceEEEecCHHH
Confidence 35677788899998663 4544443 2333332 3567886554442 477887766422 223344556654
Q ss_pred -CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 87 -MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 87 -L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
|.+. -+..+||.||.+.|=...+. . + ..+...+| +..|.++|+++|.+..+.|... .+.=.+.++.
T Consensus 186 ~l~~~--~~~~~fD~IIlDPPsF~k~~--~--~--~~~~y~~L----~~~a~~ll~~gG~l~~~scs~~-i~~~~l~~~~ 252 (286)
T PF10672_consen 186 FLKRL--KKGGRFDLIILDPPSFAKSK--F--D--LERDYKKL----LRRAMKLLKPGGLLLTCSCSHH-ISPDFLLEAV 252 (286)
T ss_dssp HHHHH--HHTT-EEEEEE--SSEESST--C--E--HHHHHHHH----HHHHHHTEEEEEEEEEEE--TT-S-HHHHHHHH
T ss_pred HHHHH--hcCCCCCEEEECCCCCCCCH--H--H--HHHHHHHH----HHHHHHhcCCCCEEEEEcCCcc-cCHHHHHHHH
Confidence 2210 12468999999999875321 1 1 11233444 4668899999999987777644 2322233333
Q ss_pred Hhc--CCEEEEEecCCCCCCCC
Q 041136 166 DKL--GLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 166 ~~~--gl~l~~~~~F~~~~yPg 185 (214)
+++ .+.+.++. -+|.+||.
T Consensus 253 ~~~a~~~~~~~~~-~~p~df~~ 273 (286)
T PF10672_consen 253 AEAAREVEFIERL-GQPPDFPD 273 (286)
T ss_dssp HHHHHHCEEEEEE-E-------
T ss_pred HHhCccceEeeee-cccccccc
Confidence 332 34444322 25666775
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.5 Score=43.62 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=75.3
Q ss_pred CCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+||=+| -|.||.. ||.. +..+ ++.|...... ..+.+|++.+.-.+ .-+..-|+.+.... . ..
T Consensus 234 ~~~vLDL~cG~G~~~l~--la~~---~~~v--~~vE~~~~av---~~a~~N~~~~~~~~-~~~~~~d~~~~~~~--~-~~ 299 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLH--CAGP---DTQL--TGIEIESEAI---ACAQQSAQMLGLDN-LSFAALDSAKFATA--Q-MS 299 (374)
T ss_pred CCEEEEccCCccHHHHH--Hhhc---CCeE--EEEECCHHHH---HHHHHHHHHcCCCc-EEEEECCHHHHHHh--c-CC
Confidence 46787665 6655544 5532 2344 4555433333 15777877664323 33566677654321 1 23
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA~~~gl~l~~~ 175 (214)
.||.||.|.|-.|.. .+++..... +++++-|+|.. .|. ---|+..| .||.+...
T Consensus 300 ~~D~vi~DPPr~G~~--------------~~~l~~l~~-----~~p~~ivyvsc---~p~TlaRDl~~L---~gy~l~~~ 354 (374)
T TIGR02085 300 APELVLVNPPRRGIG--------------KELCDYLSQ-----MAPKFILYSSC---NAQTMAKDIAEL---SGYQIERV 354 (374)
T ss_pred CCCEEEECCCCCCCc--------------HHHHHHHHh-----cCCCeEEEEEe---CHHHHHHHHHHh---cCceEEEE
Confidence 599999999987642 122221111 57777777773 231 12344445 69999999
Q ss_pred ecCCCCCCCCCccc
Q 041136 176 VEFLKQDFPGYHNK 189 (214)
Q Consensus 176 ~~F~~~~yPgY~~~ 189 (214)
.+|| +||.=.|-
T Consensus 355 ~~~D--mFPqT~Hv 366 (374)
T TIGR02085 355 QLFD--MFPHTSHY 366 (374)
T ss_pred EEec--cCCCCCcE
Confidence 9999 99976664
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.25 Score=45.41 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=74.1
Q ss_pred CeEEEE--ecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----CCC
Q 041136 20 QRILLV--GEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH----PTL 93 (214)
Q Consensus 20 ~~ILlV--GeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~----~~~ 93 (214)
.++|-+ |-|.||+ +|++... .+ ++.|...+.. ..+.+|++.+.-.++. ++.-||.+.-+. ..+
T Consensus 208 ~~vLDl~~G~G~~sl--~la~~~~---~v--~~vE~~~~ai---~~a~~N~~~~~~~~v~-~~~~d~~~~l~~~~~~~~~ 276 (362)
T PRK05031 208 GDLLELYCGNGNFTL--ALARNFR---RV--LATEISKPSV---AAAQYNIAANGIDNVQ-IIRMSAEEFTQAMNGVREF 276 (362)
T ss_pred CeEEEEeccccHHHH--HHHhhCC---EE--EEEECCHHHH---HHHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcccc
Confidence 467555 5777777 4777642 45 4555444433 2577787666432333 455677652110 000
Q ss_pred --------CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhH
Q 041136 94 --------SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGL 164 (214)
Q Consensus 94 --------~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~l 164 (214)
...+||.||.+.|-.|.. .++|.... ++++-|+|+ |+ |.+ --++..|
T Consensus 277 ~~~~~~~~~~~~~D~v~lDPPR~G~~--------------~~~l~~l~-------~~~~ivyvS-C~--p~tlarDl~~L 332 (362)
T PRK05031 277 NRLKGIDLKSYNFSTIFVDPPRAGLD--------------DETLKLVQ-------AYERILYIS-CN--PETLCENLETL 332 (362)
T ss_pred cccccccccCCCCCEEEECCCCCCCc--------------HHHHHHHH-------ccCCEEEEE-eC--HHHHHHHHHHH
Confidence 123699999999986642 22222221 235556666 32 311 2334445
Q ss_pred HHhcCCEEEEEecCCCCCCCCCccc
Q 041136 165 ADKLGLVLKEKVEFLKQDFPGYHNK 189 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~~yPgY~~~ 189 (214)
.+ ||.+.+..+|| +||.=.|-
T Consensus 333 ~~--gY~l~~v~~~D--mFPqT~Hv 353 (362)
T PRK05031 333 SQ--THKVERFALFD--QFPYTHHM 353 (362)
T ss_pred cC--CcEEEEEEEcc--cCCCCCcE
Confidence 42 99999999999 99987764
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.68 Score=39.18 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=64.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++++||-||-|.=.++..|++..+. +-..|++|..+++.+ .+.+|++.+.-.++. +..-|+.... ...
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~--~~~V~~vE~~~~~~~---~a~~~l~~~g~~~v~-~~~gd~~~~~----~~~ 143 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGK--SGKVVTIERIPELAE---KAKKTLKKLGYDNVE-VIVGDGTLGY----EEN 143 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCC--CCEEEEEeCCHHHHH---HHHHHHHHcCCCCeE-EEECCcccCC----CcC
Confidence 467899999998877777778887753 335567776666653 466777655322333 3444554321 234
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
..||+|+.+.- . . ++... ..+.|++||.+.+.+.+
T Consensus 144 ~~fD~I~~~~~---~-~--------------~~~~~----l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 144 APYDRIYVTAA---G-P--------------DIPKP----LIEQLKDGGIMVIPVGS 178 (212)
T ss_pred CCcCEEEECCC---c-c--------------cchHH----HHHhhCCCcEEEEEEcC
Confidence 67999997531 1 0 01111 23469999999887643
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.66 Score=41.18 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=75.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-+.+++||..|-|.=+.|.+||+..++...| ++||-.++-. ..|.+|+.+.--.+...+..-|+++-. ..
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v--~tyE~r~d~~---k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-----~~ 161 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHV--TTYEIREDFA---KTARENLSEFGLGDRVTLKLGDVREGI-----DE 161 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceE--EEEEecHHHH---HHHHHHHHHhccccceEEEeccccccc-----cc
Confidence 5788999999999999999999998865554 5777776655 369999998733333344445666543 23
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..||.|+-+-|-.= +.+..++.+|++||.+.+-
T Consensus 162 ~~vDav~LDmp~PW---------------------~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 162 EDVDAVFLDLPDPW---------------------NVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred cccCEEEEcCCChH---------------------HHHHHHHHHhCCCcEEEEE
Confidence 48999999998642 2345688999999998777
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.77 Score=39.28 Aligned_cols=124 Identities=22% Similarity=0.292 Sum_probs=78.4
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.=+|.+|-|.=--|..|++..++..-.+||-+..++ ++.+++..+..++. +++=.|+|-. .+..++-|
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A--------~~~Tl~TA~~n~~~--~~~V~tdl~~--~l~~~~VD 112 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPEA--------LEATLETARCNRVH--IDVVRTDLLS--GLRNESVD 112 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHH--------HHHHHHHHHhcCCc--cceeehhHHh--hhccCCcc
Confidence 346788866555556688887754444555443322 23356666655554 3444455543 36668999
Q ss_pred EEEEcCCCCCCCC-CCCcccHHHH----HHhHHHHHHHHHHHHhccCCCCEE-EEEecCCCC
Q 041136 100 VIIFNFPHAGHSP-PLSEQDTNLI----KRHKNLLEAFLKNGREMLGEGGEV-HVTLRDDHP 155 (214)
Q Consensus 100 ~IiFNFPH~G~~~-~~~~~~~~~i----~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~~P 155 (214)
.+|||.|-+-... .+.+++.+.- +.-|+.+..|+.-..++|+|.|.+ .|++....|
T Consensus 113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p 174 (209)
T KOG3191|consen 113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP 174 (209)
T ss_pred EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH
Confidence 9999999996532 2222332211 234788999999999999999998 666766666
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.36 Score=37.50 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=75.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||=|.=.++..|++. + . ..++.|..+.+.++ ..-....+ ++... ....
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~--~~~g~D~~~~~~~~------------~~~~~~~~--~~~~~----~~~~ 76 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-G--F--EVTGVDISPQMIEK------------RNVVFDNF--DAQDP----PFPD 76 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-T--S--EEEEEESSHHHHHH------------TTSEEEEE--ECHTH----HCHS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-C--C--EEEEEECCHHHHhh------------hhhhhhhh--hhhhh----hccc
Confidence 678899999997766788888554 2 2 45567765554432 11112222 12211 1345
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC---------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH--------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~--------------------- 154 (214)
..||.|+.+ ++=.. +. =...+++....+|+|+|.+.++.-...
T Consensus 77 ~~fD~i~~~--~~l~~----------~~----d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T PF13489_consen 77 GSFDLIICN--DVLEH----------LP----DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVH 140 (161)
T ss_dssp SSEEEEEEE--SSGGG----------SS----HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTE
T ss_pred cchhhHhhH--HHHhh----------cc----cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceec
Confidence 789999998 32110 11 156788889999999999977754321
Q ss_pred CCCcccHhhHHHhcCCEEEE
Q 041136 155 PYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 155 Py~~W~i~~lA~~~gl~l~~ 174 (214)
.++.+.+..+++++|+.+.+
T Consensus 141 ~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 141 FFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp EBBHHHHHHHHHHTTEEEEE
T ss_pred cCCHHHHHHHHHHCCCEEEE
Confidence 14556688888888988764
|
... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.98 Score=37.75 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=59.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-..+.+||.||-|.=.++..|++..+ . .++.|..+++.+ .+.+|++.+.-.++.+..+ |+.+. . ..
T Consensus 75 ~~~~~~~VLeiG~GsG~~t~~la~~~~---~--v~~vd~~~~~~~---~a~~~~~~~~~~~v~~~~~-d~~~~--~--~~ 141 (212)
T PRK00312 75 ELKPGDRVLEIGTGSGYQAAVLAHLVR---R--VFSVERIKTLQW---EAKRRLKQLGLHNVSVRHG-DGWKG--W--PA 141 (212)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhC---E--EEEEeCCHHHHH---HHHHHHHHCCCCceEEEEC-CcccC--C--Cc
Confidence 346788999999665444555666542 3 455665555542 4666766653333444433 44321 1 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..+||+|+.+.+... + .+ ....+|++||.+.+...
T Consensus 142 ~~~fD~I~~~~~~~~------------~--~~--------~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPE------------I--PR--------ALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchh------------h--hH--------HHHHhcCCCcEEEEEEc
Confidence 367999999864311 1 11 23468999999988765
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.43 Score=40.31 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=78.4
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh--HHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE--RTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~--~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~ 90 (214)
.+-+.++.-||.+|=|+==|.+++.++-..+.+|+|..++.+ ..|.++||+.. +++-||-.|..+
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~-------------ii~gda~~l~~~ 109 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVN-------------IINGDAFDLRTT 109 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcc-------------ccccchhhHHHH
Confidence 455788899999998888889999887656678888887764 56677776432 567788777743
Q ss_pred -CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEE
Q 041136 91 -PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVT 149 (214)
Q Consensus 91 -~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VT 149 (214)
...+.+.||.||.--|-..... +..-++| +++.+.|..||.+ .+|
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~----------~~~iail----e~~~~rl~~gg~lvqft 156 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPM----------HRRIAIL----ESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcH----------HHHHHHH----HHHHHhcCCCCeEEEEE
Confidence 3457789999999999887642 2233444 4456778887765 444
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.65 Score=43.71 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=66.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++.. ..+ ++.|-.++..+. +.+.........+...|+.+... .+.
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~~---~~v--~giD~s~~~l~~------a~~~~~~~~~i~~~~~d~~~~~~--~~~ 100 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKKA---GQV--IALDFIESVIKK------NESINGHYKNVKFMCADVTSPDL--NIS 100 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhhC---CEE--EEEeCCHHHHHH------HHHHhccCCceEEEEeccccccc--CCC
Confidence 44467799999966656666688764 244 566754444421 11111112233345557754321 245
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.+++..=. ....+..+++.+..+|+++|.+.+.
T Consensus 101 ~~~fD~I~~~~~l~~l--------------~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 101 DGSVDLIFSNWLLMYL--------------SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCCEEEEehhhhHHhC--------------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5789999999874321 2334678888899999999998665
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.47 Score=40.98 Aligned_cols=111 Identities=10% Similarity=0.007 Sum_probs=65.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--CC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH--PT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~--~~ 92 (214)
-....++||.+|-|-=.=+++|++..+... ..|++|..++.. .-|.+|++...-.+..-++.-||.+.-.. +.
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g--~v~tiD~d~~~~---~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDG--RITAIDIDKEAY---EVGLEFIKKAGVDHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCC--EEEEEECCHHHH---HHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC
Confidence 356788999999654333455777665433 455666555443 24777887664323233444477653110 00
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....+||.|..+-+. .-...+|.-+..+|++||.|.+.
T Consensus 140 ~~~~~fD~VfiDa~k-------------------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 140 DPKPEFDFAFVDADK-------------------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCCCEEEECCCH-------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 113579999886432 12224677788999999987764
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.37 Score=44.22 Aligned_cols=112 Identities=20% Similarity=0.257 Sum_probs=66.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+.++||++|=|+-+-++-+.++.+ ...|++.-+|.+- ++.++|-.. +-..+..-.++|+.+ ||.+.-+ -..+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~--~~~~~~dprv~v~~~-Da~~~L~---~~~~ 175 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTV--NREAFCDKRLELIIN-DARAELE---KRDE 175 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhccc--ccccccCCceEEEEC-hhHHHHh---hCCC
Confidence 567999999999888887777543 3467777676542 333333111 111233344555544 5554211 1246
Q ss_pred cccEEEEcCCCC--CCCCCCCcccHHHHHHhHHHHHHHHH-HHHhccCCCCEEEE
Q 041136 97 KFDVIIFNFPHA--GHSPPLSEQDTNLIKRHKNLLEAFLK-NGREMLGEGGEVHV 148 (214)
Q Consensus 97 ~FD~IiFNFPH~--G~~~~~~~~~~~~i~~n~~LL~~Ff~-Sa~~lL~~~G~i~V 148 (214)
+||.||.+.|.. ++. ...-.=..||+ .++..|+++|-+.+
T Consensus 176 ~yDvIi~D~~dp~~~~~------------~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 176 KFDVIIGDLADPVEGGP------------CYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred CccEEEecCCCccccCc------------chhhccHHHHHHHHHHhcCCCcEEEE
Confidence 799999997642 211 01223457888 89999999997644
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.17 Score=46.38 Aligned_cols=128 Identities=19% Similarity=0.291 Sum_probs=67.6
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC----C--------
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR----H-------- 90 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~----~-------- 90 (214)
|..|=|+||.+ ||+... .|+|. |..++..+ +|..|.+...-.++.... .||.++.. .
T Consensus 203 lycG~G~fsl~--la~~~~---~V~gv--E~~~~av~---~A~~Na~~N~i~n~~f~~-~~~~~~~~~~~~~r~~~~~~~ 271 (352)
T PF05958_consen 203 LYCGVGTFSLP--LAKKAK---KVIGV--EIVEEAVE---DARENAKLNGIDNVEFIR-GDAEDFAKALAKAREFNRLKG 271 (352)
T ss_dssp ES-TTTCCHHH--HHCCSS---EEEEE--ES-HHHHH---HHHHHHHHTT--SEEEEE---SHHCCCHHCCS-GGTTGGG
T ss_pred EeecCCHHHHH--HHhhCC---eEEEe--eCCHHHHH---HHHHHHHHcCCCcceEEE-eeccchhHHHHhhHHHHhhhh
Confidence 56799999888 777653 56555 55554442 688888877655655543 34443321 0
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecCCCCCC-cccHhhHHHhc
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRDDHPYN-QWNVMGLADKL 168 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~~Py~-~W~i~~lA~~~ 168 (214)
..+....+|.||.+.|-.|... .. .+++. ++ .+| +|+ |+ |-+ .-++..|. .
T Consensus 272 ~~~~~~~~d~vilDPPR~G~~~-------~~----~~~~~-------~~----~~ivYvS-Cn--P~tlaRDl~~L~--~ 324 (352)
T PF05958_consen 272 IDLKSFKFDAVILDPPRAGLDE-------KV----IELIK-------KL----KRIVYVS-CN--PATLARDLKILK--E 324 (352)
T ss_dssp S-GGCTTESEEEE---TT-SCH-------HH----HHHHH-------HS----SEEEEEE-S---HHHHHHHHHHHH--C
T ss_pred hhhhhcCCCEEEEcCCCCCchH-------HH----HHHHh-------cC----CeEEEEE-CC--HHHHHHHHHHHh--h
Confidence 0123347899999999999731 11 11221 22 255 555 43 322 34455553 3
Q ss_pred CCEEEEEecCCCCCCCCCcccc
Q 041136 169 GLVLKEKVEFLKQDFPGYHNKR 190 (214)
Q Consensus 169 gl~l~~~~~F~~~~yPgY~~~r 190 (214)
||.+....+|| +||.=.|-.
T Consensus 325 ~y~~~~v~~~D--mFP~T~HvE 344 (352)
T PF05958_consen 325 GYKLEKVQPVD--MFPQTHHVE 344 (352)
T ss_dssp CEEEEEEEEE---SSTTSS--E
T ss_pred cCEEEEEEEee--cCCCCCcEE
Confidence 89999999999 999877643
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.56 Score=41.67 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=63.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcC-ccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKH-WTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY-~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+.+|||++|-||=-=++-+.|+- .+|+---+|.+- ++.++| |... +.+..-.++++..+ .+ -.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~---~~~~DpRv~l~~~~-----~~---~~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFH---EVKNNKNFTHAKQL-----LD---LD 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHH---HhhcCCCEEEeehh-----hh---cc
Confidence 567999999988876666666652 367777777642 455554 4322 24655566776532 11 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.++||.||-+=. . . ..|++.+++.|+++|-+.+
T Consensus 137 ~~~fDVIIvDs~----~-------------~----~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 137 IKKYDLIICLQE----P-------------D----IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred CCcCCEEEEcCC----C-------------C----hHHHHHHHHhcCCCcEEEE
Confidence 367999999821 0 0 4788999999999996644
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.36 Score=42.73 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=55.0
Q ss_pred EEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc--cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 78 VLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ--DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 78 Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~--~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
-++.-||.++-+ .+..++||.||.|.|.-... ..... +.. .......+..+|..+..+|+++|.|.|- ++..
T Consensus 10 ~i~~gD~~~~l~--~l~~~siDlIitDPPY~~~~-~~~~~~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~~~- 83 (284)
T PRK11524 10 TIIHGDALTELK--KIPSESVDLIFADPPYNIGK-NFDGLIEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIM-NSTE- 83 (284)
T ss_pred EEEeccHHHHHH--hcccCcccEEEECCCccccc-cccccccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEE-cCch-
Confidence 355567777432 25567899999999985311 11111 101 1235677899999999999999999875 2211
Q ss_pred CCcccHhhHHHhcCCEEEEEe
Q 041136 156 YNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~ 176 (214)
.- ....++.+.|+.+....
T Consensus 84 ~~--~~~~~~~~~~f~~~~~i 102 (284)
T PRK11524 84 NM--PFIDLYCRKLFTIKSRI 102 (284)
T ss_pred hh--hHHHHHHhcCcceEEEE
Confidence 11 11234456677665544
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.98 Score=41.05 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=75.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHH-HHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQS-LWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~-L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+++||-||=|+=-++..++.. + + . .++++|........ ++ .++. +...+...+...|+.++.. .
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~-g-~-~-~v~GiDpS~~ml~q---~~-~~~~~~~~~~~v~~~~~~ie~lp~-----~ 186 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGH-G-A-K-SLVGIDPTVLFLCQ---FE-AVRKLLDNDKRAILEPLGIEQLHE-----L 186 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-C-C-C-EEEEEcCCHHHHHH---HH-HHHHHhccCCCeEEEECCHHHCCC-----C
Confidence 34689999996665555556654 2 1 2 45888965554422 11 1222 2222233344456666542 1
Q ss_pred CcccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe--cCCC------C---C----Cc
Q 041136 96 MKFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL--RDDH------P---Y----NQ 158 (214)
Q Consensus 96 ~~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl--~~~~------P---y----~~ 158 (214)
..||.|+.+. -|.. =...+++.+..+|++||++.++- .++. | | +.
T Consensus 187 ~~FD~V~s~gvL~H~~------------------dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv 248 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRK------------------SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV 248 (314)
T ss_pred CCcCEEEEcchhhccC------------------CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc
Confidence 3699999873 3432 23457888999999999997752 2221 2 1 22
Q ss_pred cc------HhhHHHhcCCEEEEEec
Q 041136 159 WN------VMGLADKLGLVLKEKVE 177 (214)
Q Consensus 159 W~------i~~lA~~~gl~l~~~~~ 177 (214)
|. +....+++||...+...
T Consensus 249 ~flpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 249 YFIPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEEe
Confidence 32 34667889999887653
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.61 Score=42.77 Aligned_cols=132 Identities=14% Similarity=0.173 Sum_probs=75.1
Q ss_pred CeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC----CC
Q 041136 20 QRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP----TL 93 (214)
Q Consensus 20 ~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~----~~ 93 (214)
.+||-+| -|.||+ +|++... -.++.|...+..+ .+.+|++.+.-.++. ++.-|+.++-... .+
T Consensus 199 ~~vlDl~~G~G~~sl--~la~~~~-----~v~~vE~~~~av~---~a~~n~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~ 267 (353)
T TIGR02143 199 GDLLELYCGNGNFSL--ALAQNFR-----RVLATEIAKPSVN---AAQYNIAANNIDNVQ-IIRMSAEEFTQAMNGVREF 267 (353)
T ss_pred CcEEEEeccccHHHH--HHHHhCC-----EEEEEECCHHHHH---HHHHHHHHcCCCcEE-EEEcCHHHHHHHHhhcccc
Confidence 3686665 666666 5777652 3556665554442 577787766433433 4555666532110 01
Q ss_pred ---C-----CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhH
Q 041136 94 ---S-----QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGL 164 (214)
Q Consensus 94 ---~-----~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~l 164 (214)
. ...||.|+.+.|-.|.. .++|.. ++++++-|+|+ | .|.. --++..|
T Consensus 268 ~~~~~~~~~~~~~d~v~lDPPR~G~~--------------~~~l~~-------l~~~~~ivYvs-C--~p~tlaRDl~~L 323 (353)
T TIGR02143 268 RRLKGIDLKSYNCSTIFVDPPRAGLD--------------PDTCKL-------VQAYERILYIS-C--NPETLKANLEQL 323 (353)
T ss_pred ccccccccccCCCCEEEECCCCCCCc--------------HHHHHH-------HHcCCcEEEEE-c--CHHHHHHHHHHH
Confidence 1 23489999999987752 222222 12245666776 2 2311 2334444
Q ss_pred HHhcCCEEEEEecCCCCCCCCCcccc
Q 041136 165 ADKLGLVLKEKVEFLKQDFPGYHNKR 190 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~~yPgY~~~r 190 (214)
. .+|.+....+|| +||.=.|-.
T Consensus 324 ~--~~Y~l~~v~~~D--mFP~T~HvE 345 (353)
T TIGR02143 324 S--ETHRVERFALFD--QFPYTHHME 345 (353)
T ss_pred h--cCcEEEEEEEcc--cCCCCCcEE
Confidence 3 349999999999 999877643
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.75 Score=40.63 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=59.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||-|.=.++..|++. + .. .|+.|..++..+ .++++++... .++.+. ..|+... .+ .+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~-g--~~--V~avD~s~~ai~---~~~~~~~~~~-l~v~~~-~~D~~~~----~~-~~ 183 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL-G--FD--VTAVDINQQSLE---NLQEIAEKEN-LNIRTG-LYDINSA----SI-QE 183 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC-C--CE--EEEEECCHHHHH---HHHHHHHHcC-CceEEE-Eechhcc----cc-cC
Confidence 34569999995443444456663 2 34 456675544432 2444444322 133322 2244332 12 56
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
+||.|+.++...- .+.+.+..+++.+..+|++||.+.+
T Consensus 184 ~fD~I~~~~vl~~--------------l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 184 EYDFILSTVVLMF--------------LNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CccEEEEcchhhh--------------CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 7999998865321 1344667888999999999999654
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.2 Score=37.30 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=66.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.+..+||-||=|.=.++..|++. +.. .|+.|..+++.. .+.+++......+...+...|+..+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~--v~gvD~s~~~i~---~a~~~~~~~~~~~~i~~~~~d~~~~~------- 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAI--VKAVDISEQMVQ---MARNRAQGRDVAGNVEFEVNDLLSLC------- 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCE--EEEEECCHHHHH---HHHHHHHhcCCCCceEEEECChhhCC-------
Confidence 345789999984444455556653 223 456675444431 34444433221112233334555432
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC---------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH--------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~--------------------- 154 (214)
.+||.|+..+.-.-.. ..-+...+..+..+++++ +.|+.....
T Consensus 118 ~~fD~ii~~~~l~~~~--------------~~~~~~~l~~i~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYP--------------ASDMAKALGHLASLTKER--VIFTFAPKTAWLAFLKMIGELFPGSSRATS 181 (219)
T ss_pred CCcCEEEEhhHHHhCC--------------HHHHHHHHHHHHHHhCCC--EEEEECCCchHHHHHHHHHhhCcCcccccc
Confidence 6799999865422110 111333444555555543 434432111
Q ss_pred --CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 --PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 --Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
++....++.++..+|+.+......
T Consensus 182 ~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 182 AYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred eEEecHHHHHHHHHHcCceeeeeecc
Confidence 123445777888888888776433
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.29 Score=45.14 Aligned_cols=123 Identities=18% Similarity=0.219 Sum_probs=79.7
Q ss_pred CCCCCCeE--EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRI--LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~I--LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
-..++.+| +.-|=|=||+. +|++- .. .|+|.-+...+- ...++|++.++-.+....+.-||..+...
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~--~Ak~g-~~-~V~A~diNP~A~-----~~L~eNi~LN~v~~~v~~i~gD~rev~~~-- 253 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIP--IAKKG-RP-KVYAIDINPDAV-----EYLKENIRLNKVEGRVEPILGDAREVAPE-- 253 (341)
T ss_pred hhcCCCEEEEccCCcccchhh--hhhcC-Cc-eEEEEecCHHHH-----HHHHHHHHhcCccceeeEEeccHHHhhhc--
Confidence 45557776 46799999988 55542 22 377776665432 13778888887777666677788877542
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC-CCCCccc---HhhHHHhc
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD-HPYNQWN---VMGLADKL 168 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~-~Py~~W~---i~~lA~~~ 168 (214)
...||+||.|.|+... .|...|..+++.+|.||.-...- ..-..|. |...|.+.
T Consensus 254 --~~~aDrIim~~p~~a~--------------------~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~ 311 (341)
T COG2520 254 --LGVADRIIMGLPKSAH--------------------EFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKG 311 (341)
T ss_pred --cccCCEEEeCCCCcch--------------------hhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhc
Confidence 2779999999999432 35566888888899997764321 1111123 44566666
Q ss_pred CC
Q 041136 169 GL 170 (214)
Q Consensus 169 gl 170 (214)
|+
T Consensus 312 ~~ 313 (341)
T COG2520 312 GY 313 (341)
T ss_pred cC
Confidence 54
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.41 Score=41.29 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=52.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-+..++||.||-|-==-|+-||+..+ ..+|.|..++|.+ .|..|++.|.-.++.|.++-=.+-+. ..
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~-----~V~siEr~~~L~~---~A~~~L~~lg~~nV~v~~gDG~~G~~-----~~ 136 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG-----RVVSIERIEELAE---QARRNLETLGYENVTVRHGDGSKGWP-----EE 136 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC-----eEEEEEEcHHHHH---HHHHHHHHcCCCceEEEECCcccCCC-----CC
Confidence 56789999999995333444555443 4567787788873 68899999987778888873222111 23
Q ss_pred CcccEEEEc
Q 041136 96 MKFDVIIFN 104 (214)
Q Consensus 96 ~~FD~IiFN 104 (214)
.+||+|+..
T Consensus 137 aPyD~I~Vt 145 (209)
T COG2518 137 APYDRIIVT 145 (209)
T ss_pred CCcCEEEEe
Confidence 789999985
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.7 Score=38.53 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=56.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+++||-||-|.=..+.++++ ++ +..++|+-.|.. .. ..+.+|++...-.........| +. .....+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~-~g-~~~V~avDid~~--al---~~a~~n~~~n~~~~~~~~~~~~---~~---~~~~~~ 225 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK-LG-AAKVVGIDIDPL--AV---ESARKNAELNQVSDRLQVKLIY---LE---QPIEGK 225 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH-cC-CCeEEEEECCHH--HH---HHHHHHHHHcCCCcceEEEecc---cc---cccCCC
Confidence 568999999665334444554 33 345666655543 22 1366666543211111112222 11 122457
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+.|... . -+..++..+..+|++||.+.++
T Consensus 226 fDlVvan~~~------------~-------~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 226 ADVIVANILA------------E-------VIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred ceEEEEecCH------------H-------HHHHHHHHHHHHcCCCcEEEEE
Confidence 9999999631 1 2345777888999999999886
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=93.06 E-value=2.2 Score=44.98 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=82.4
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh--C--------------CCEEEEcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS--R--------------GCLVLHGV 82 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~--------------g~~Vl~~V 82 (214)
+.+||-+|-|+=-.+.+|++... ...++|+ |-..+..+ -|..|++.+.- . .+. ++.-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~av--Dis~~Al~---~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~-f~~s 191 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGL--DINPRAVK---VAWINLYLNALDDDGLPVYDGEGKTLLDRVE-FYES 191 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEE--ECCHHHHH---HHHHHHHHcCcccccccccccccccccccEE-EEEC
Confidence 46899999998888888998874 2355555 64343331 47778875421 0 122 2333
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHH------------------------HhHHHHHHHHHHHHh
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIK------------------------RHKNLLEAFLKNGRE 138 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~------------------------~n~~LL~~Ff~Sa~~ 138 (214)
|....-. -...+||.||-|.|=+.... ...-..+ ++ .--.+++..+..|..
T Consensus 192 Dl~~~~~---~~~~~fDlIVSNPPYI~~~e-~~~l~~e-V~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~ 266 (1082)
T PLN02672 192 DLLGYCR---DNNIELDRIVGCIPQILNPN-PEAMSKL-VTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIS 266 (1082)
T ss_pred chhhhcc---ccCCceEEEEECCCcCCCcc-hhhcChh-hhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHH
Confidence 4432210 01236999999999875421 0000000 11 112456788889999
Q ss_pred ccCCCCEEEEEecCCCCCCcccHh-hHHHhcCCEEEE
Q 041136 139 MLGEGGEVHVTLRDDHPYNQWNVM-GLADKLGLVLKE 174 (214)
Q Consensus 139 lL~~~G~i~VTl~~~~Py~~W~i~-~lA~~~gl~l~~ 174 (214)
+|+++|.+.+-+-..| .=.+. .+.++.|+....
T Consensus 267 ~L~pgG~l~lEiG~~q---~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 267 VIKPMGIMIFNMGGRP---GQAVCERLFERRGFRITK 300 (1082)
T ss_pred hccCCCEEEEEECccH---HHHHHHHHHHHCCCCeeE
Confidence 9999999887754333 11455 477777876544
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.6 Score=39.81 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=62.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++++||.+|-|.=.++..|++..+....|+ +.|..+++.+ .+.++++.+...++.+..+ |+.+... ..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~Vv--gVDis~~~l~---~Ar~~l~~~g~~nV~~i~g-D~~~~~~----~~ 147 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVV--SVEYSRKICE---IAKRNVRRLGIENVIFVCG-DGYYGVP----EF 147 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEE--EEECCHHHHH---HHHHHHHHcCCCcEEEEeC-Chhhccc----cc
Confidence 45778999999887667777888765323344 5565555542 4677776654434554443 6654322 12
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..||.|+..+ |.. .+... ....|+++|.+.+.+
T Consensus 148 ~~fD~Ii~~~---g~~---------------~ip~~----~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 APYDVIFVTV---GVD---------------EVPET----WFTQLKEGGRVIVPI 180 (322)
T ss_pred CCccEEEECC---chH---------------HhHHH----HHHhcCCCCEEEEEe
Confidence 4699999863 210 01111 234789999987754
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.69 Score=40.74 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=70.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.++++||..|.|.=|+|.+|++..++... ..|||-.++-. ..|.+|++...-.+...++.-|+.+-.-...+ .
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~--v~t~E~~~~~~---~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-~ 111 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGH--VYTYEFREDRA---EKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-E 111 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSE--EEEEESSHHHH---HHHHHHHHHTTCCTTEEEEES-GGCG--STT--T
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeE--EEccccCHHHH---HHHHHHHHHcCCCCCceeEecceecccccccc-c
Confidence 468899999999999999999999976544 45677666654 35888888765545666777777642110011 3
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhcc-CCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREML-GEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL-~~~G~i~VT 149 (214)
..+|.|+-+-|..-. .| .+|...| ++||.|.+-
T Consensus 112 ~~~DavfLDlp~Pw~----------~i-----------~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWE----------AI-----------PHAKRALKKPGGRICCF 145 (247)
T ss_dssp TSEEEEEEESSSGGG----------GH-----------HHHHHHE-EEEEEEEEE
T ss_pred CcccEEEEeCCCHHH----------HH-----------HHHHHHHhcCCceEEEE
Confidence 679999999998642 12 3466778 788887666
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.48 Score=42.44 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=68.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccC-CCC-
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTM-DRH- 90 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L-~~~- 90 (214)
.-....++||.+|-|-=..|+++|+..+.... .|++|..++.. .-|.+|++..--. .+.++.| ||.+. .+.
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~--V~TiE~d~e~~---~~Ar~n~~~aGl~~~I~li~G-dA~e~L~~l~ 187 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGC--LVACERDSNSL---EVAKRYYELAGVSHKVNVKHG-LAAESLKSMI 187 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCE--EEEEECCHHHH---HHHHHHHHHcCCCCcEEEEEc-CHHHHHHHHH
Confidence 34667899999998777778888887754334 45556544433 2477777765322 2444444 66542 210
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.......||.|..+-+- .-...+|.-+.++|++||.|.+-
T Consensus 188 ~~~~~~~FD~VFIDa~K-------------------~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 188 QNGEGSSYDFAFVDADK-------------------RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred hcccCCCCCEEEECCCH-------------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 01123689999987542 12345566678899999998765
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.4 Score=41.03 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=68.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++++||.||-|-==+|..|++..+.. =..++.|..++|.+ .|.+|++.+...++.+.++ |+..-. -..
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~--g~Vv~vE~~~~l~~---~A~~~l~~~~~~nv~~~~g-dg~~g~----~~~ 139 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPV--GRVVSVERDPELAE---RARRNLARLGIDNVEVVVG-DGSEGW----PEE 139 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTT--EEEEEEESBHHHHH---HHHHHHHHHTTHSEEEEES--GGGTT----GGG
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCcc--ceEEEECccHHHHH---HHHHHHHHhccCceeEEEc-chhhcc----ccC
Confidence 5688999999988444566677776532 24457887777763 5889999987767888776 444321 124
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
.+||+|+.+.--..- -..| .+.|++||.+.+-+.++.
T Consensus 140 apfD~I~v~~a~~~i--------------p~~l--------~~qL~~gGrLV~pi~~~~ 176 (209)
T PF01135_consen 140 APFDRIIVTAAVPEI--------------PEAL--------LEQLKPGGRLVAPIGQGG 176 (209)
T ss_dssp -SEEEEEESSBBSS----------------HHH--------HHTEEEEEEEEEEESSSS
T ss_pred CCcCEEEEeeccchH--------------HHHH--------HHhcCCCcEEEEEEccCC
Confidence 689999998643211 1222 245799999999888743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.92 Score=42.26 Aligned_cols=100 Identities=18% Similarity=0.152 Sum_probs=63.2
Q ss_pred CeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 20 QRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 20 ~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+||=++ -|.+|.. +|+..+ ...|+| .|..++.. ..+..|++.+.-.+ ..++.-||..+-.. ..+
T Consensus 59 ~~vLDl~aGsG~~~l~--~a~~~~-~~~V~a--~Din~~Av---~~a~~N~~~N~~~~-~~v~~~Da~~~l~~----~~~ 125 (382)
T PRK04338 59 ESVLDALSASGIRGIR--YALETG-VEKVTL--NDINPDAV---ELIKKNLELNGLEN-EKVFNKDANALLHE----ERK 125 (382)
T ss_pred CEEEECCCcccHHHHH--HHHHCC-CCEEEE--EeCCHHHH---HHHHHHHHHhCCCc-eEEEhhhHHHHHhh----cCC
Confidence 4787666 5555554 666554 234555 55444333 24677886665333 34788888764221 456
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
||.|+.|.| |.. ..|+.+|-..++++|-|+||-.|
T Consensus 126 fD~V~lDP~--Gs~------------------~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 126 FDVVDIDPF--GSP------------------APFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred CCEEEECCC--CCc------------------HHHHHHHHHHhcCCCEEEEEecC
Confidence 999999987 541 13667777778999999999555
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=92.11 E-value=4.7 Score=33.54 Aligned_cols=133 Identities=15% Similarity=0.086 Sum_probs=67.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+..+||-||-|.=.++..|++.. .. .|+.|..+++.+ .+.+++......+...+...| +.. ..
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~---~~--v~~~D~s~~~i~---~a~~~~~~~~~~~~i~~~~~d---~~~----~~ 125 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG---AK--VVASDISPQMVE---EARERAPEAGLAGNITFEVGD---LES----LL 125 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC---CE--EEEEECCHHHHH---HHHHHHHhcCCccCcEEEEcC---chh----cc
Confidence 3567899999955545566677653 23 566674444332 344444332211112222334 221 23
Q ss_pred CcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-------------------
Q 041136 96 MKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------------------- 154 (214)
..||.|+.+.. |... .-+...++....++. |.+.|++....
T Consensus 126 ~~fD~v~~~~~l~~~~~----------------~~~~~~l~~l~~~~~--~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (230)
T PRK07580 126 GRFDTVVCLDVLIHYPQ----------------EDAARMLAHLASLTR--GSLIFTFAPYTPLLALLHWIGGLFPGPSRT 187 (230)
T ss_pred CCcCEEEEcchhhcCCH----------------HHHHHHHHHHHhhcC--CeEEEEECCccHHHHHHHHhccccCCccCC
Confidence 57999998755 3221 012222233333443 33444432211
Q ss_pred ----CCCcccHhhHHHhcCCEEEEEecCCCC
Q 041136 155 ----PYNQWNVMGLADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 155 ----Py~~W~i~~lA~~~gl~l~~~~~F~~~ 181 (214)
.++..++..+.+.+|+.+.+..++...
T Consensus 188 ~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred CCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 123345777888899999988776643
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=3.2 Score=35.10 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=45.2
Q ss_pred CCCCeEEEEe--cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVG--EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVG--eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
+...+||-|| .|+++.. |++... .+.+...|+.|..+++.+ .+.+++ ...++.+.. +|+..+..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~--L~~~~~~~g~~~~v~gvD~s~~~l~---~a~~~~---~~~~~~~~~-~~~~~l~~---- 125 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAID--LARWARRDGLRLEVTAIDPDPRAVA---FARANP---RRPGVTFRQ-AVSDELVA---- 125 (232)
T ss_pred CCCcEEEEeccCCCHHHHH--HHHHHHhCCCCcEEEEEcCCHHHHH---HHHhcc---ccCCCeEEE-Eecccccc----
Confidence 5678999999 6665554 665431 123456778886555442 233322 223454433 45555542
Q ss_pred CCCcccEEEEcCC
Q 041136 94 SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ~~~~FD~IiFNFP 106 (214)
...+||.|+.|+-
T Consensus 126 ~~~~fD~V~~~~~ 138 (232)
T PRK06202 126 EGERFDVVTSNHF 138 (232)
T ss_pred cCCCccEEEECCe
Confidence 3568999999976
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=2.1 Score=35.35 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=63.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+.+||-+|-|.=+++..+++... +..+ ++.|...+..+ .+++|++.+...++.+ +.-||...-. .+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V--~~vD~s~~~~~---~a~~n~~~~~~~~v~~-~~~d~~~~~~--~~- 106 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRV--IAIERDEEVVN---LIRRNCDRFGVKNVEV-IEGSAPECLA--QL- 106 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEE--EEEeCCHHHHH---HHHHHHHHhCCCCeEE-EECchHHHHh--hC-
Confidence 445778999999777667777776643 3344 45565444442 4778887765434444 4456643111 11
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+|.|+.. +.. -+..+++.+..+|++||.+.+.
T Consensus 107 ~~~~d~v~~~----~~~----------------~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 107 APAPDRVCIE----GGR----------------PIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred CCCCCEEEEE----CCc----------------CHHHHHHHHHHhcCCCeEEEEE
Confidence 1236777653 111 1255677788889999998776
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.89 E-value=4.5 Score=36.64 Aligned_cols=132 Identities=19% Similarity=0.258 Sum_probs=75.0
Q ss_pred CCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-hCCCEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-SRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+++||-|| .|.+++ .+++.. . . .++++|.......+ +......+. ..++. +...|+.++. +
T Consensus 122 ~g~~VLDIGCG~G~~~~--~la~~g-~-~--~V~GiD~S~~~l~q---~~a~~~~~~~~~~i~-~~~~d~e~lp----~- 186 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMW--RMLGAG-A-K--LVVGIDPSQLFLCQ---FEAVRKLLGNDQRAH-LLPLGIEQLP----A- 186 (322)
T ss_pred CCCEEEEeccCCcHHHH--HHHHcC-C-C--EEEEEcCCHHHHHH---HHHHHHhcCCCCCeE-EEeCCHHHCC----C-
Confidence 468999999 555555 466653 2 2 26778855443321 111111111 12343 3445776663 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe--cCCC------C---C----Ccc
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL--RDDH------P---Y----NQW 159 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl--~~~~------P---y----~~W 159 (214)
...||.|+.+ |. + .|..=...+++.+..+|++||++.++- .++. | | +.|
T Consensus 187 ~~~FD~V~s~----~v-----------l-~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~ 250 (322)
T PRK15068 187 LKAFDTVFSM----GV-----------L-YHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY 250 (322)
T ss_pred cCCcCEEEEC----Ch-----------h-hccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce
Confidence 5679999964 11 1 122223457888999999999987652 1211 2 2 122
Q ss_pred ------cHhhHHHhcCCEEEEEecCCC
Q 041136 160 ------NVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 160 ------~i~~lA~~~gl~l~~~~~F~~ 180 (214)
.+..+..++||...+......
T Consensus 251 ~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 251 FIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred eCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 256788899999888765544
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.54 Score=41.42 Aligned_cols=102 Identities=23% Similarity=0.288 Sum_probs=58.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||=||=|.=++|.+||+. + -..|+.|-.++..+ .|. +.+++ .|+. .+-.+..++.. ...+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~---G--a~VtgiD~se~~I~---~Ak--~ha~e-~gv~--i~y~~~~~edl-~~~~~~ 124 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL---G--ASVTGIDASEKPIE---VAK--LHALE-SGVN--IDYRQATVEDL-ASAGGQ 124 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC---C--CeeEEecCChHHHH---HHH--Hhhhh-cccc--ccchhhhHHHH-HhcCCC
Confidence 6789999996666777778885 2 34456673333221 111 22233 2333 11112222111 112378
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+-+= ++ .|-.--..|.++|.++++|+|.+.++
T Consensus 125 FDvV~cmE---------------Vl-EHv~dp~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 125 FDVVTCME---------------VL-EHVPDPESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred ccEEEEhh---------------HH-HccCCHHHHHHHHHHHcCCCcEEEEe
Confidence 99998751 22 23334455999999999999999776
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.34 E-value=1 Score=39.04 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=68.9
Q ss_pred cCCCCCCeEEEEecC-chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCC
Q 041136 14 SHYTNNQRILLVGEG-DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHP 91 (214)
Q Consensus 14 ~~~~~~~~ILlVGeG-nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~ 91 (214)
.-.+..++||.+|-+ .|| |+-+|..+.... .-|+.|..++.. ..|.+|+++---.. +.++.+-||-+.-+.
T Consensus 55 ~~~~~~k~iLEiGT~~GyS-al~mA~~l~~~g--~l~tiE~~~e~~---~~A~~n~~~ag~~~~i~~~~~gdal~~l~~- 127 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYS-ALWMALALPDDG--RLTTIERDEERA---EIARENLAEAGVDDRIELLLGGDALDVLSR- 127 (219)
T ss_pred HHhcCCceEEEeecccCHH-HHHHHhhCCCCC--eEEEEeCCHHHH---HHHHHHHHHcCCcceEEEEecCcHHHHHHh-
Confidence 346688999999954 455 344566664333 444555444433 35778877765444 344444577765442
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+...+||.|.-+- -+..-..||..+..+|++||-|.+-
T Consensus 128 -~~~~~fDliFIDa-------------------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 -LLDGSFDLVFIDA-------------------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred -ccCCCccEEEEeC-------------------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 4568899986431 1234567889999999999988654
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.31 E-value=7.3 Score=33.37 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCCeEEEEecCc--hhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVGEGD--FSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGn--FSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++||=+|=|+ |+++.+|. | +..++|.-.|.+..- -+.+|..+| .|-.-+..-|+++..
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~l---G-a~~V~~vdiD~~a~e-----i~r~N~~~l--~g~v~f~~~dv~~~~------- 106 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALL---G-ASRVLAVDIDPEALE-----IARANAEEL--LGDVEFVVADVSDFR------- 106 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhc---C-CcEEEEEecCHHHHH-----HHHHHHHhh--CCceEEEEcchhhcC-------
Confidence 456687777555 44443332 3 457888777775432 256677763 344555666777653
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.+||.+|.|.|. |... -++.+..|..+|+-|. +..++-... ..=.++..++..|..+...
T Consensus 107 ~~~dtvimNPPF-G~~~---------rhaDr~Fl~~Ale~s~--------vVYsiH~a~--~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 107 GKFDTVIMNPPF-GSQR---------RHADRPFLLKALEISD--------VVYSIHKAG--SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred CccceEEECCCC-cccc---------ccCCHHHHHHHHHhhh--------eEEEeeccc--cHHHHHHHHHhcCCeEEEE
Confidence 568999999997 3211 1456788888887773 333322211 3445667888888655443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.35 Score=39.72 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=60.6
Q ss_pred cCCCCCCeEEEEecC--chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh--CCCEEEEccccccCCC
Q 041136 14 SHYTNNQRILLVGEG--DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS--RGCLVLHGVNVHTMDR 89 (214)
Q Consensus 14 ~~~~~~~~ILlVGeG--nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~Vl~~VDAt~L~~ 89 (214)
.....+.+||.+|=| =.|.+ +++.. .+..|++|=++. +. +..+.|++.... .+.......|-.+-..
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~--~a~~~-~~~~Vv~TD~~~---~l---~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~ 111 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIA--AAKLF-GAARVVLTDYNE---VL---ELLRRNIELNGSLLDGRVSVRPLDWGDELD 111 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHH--HHHT--T-SEEEEEE-S----HH---HHHHHHHHTT--------EEEE--TTS-HH
T ss_pred hhhcCCceEEEECCccchhHHH--HHhcc-CCceEEEeccch---hh---HHHHHHHHhccccccccccCcEEEecCccc
Confidence 346678899999965 34444 44443 356899998876 22 245566665431 1111112222111000
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
...+...+||.||- . .+-++.+++..++.....+|+++|.|.++...-
T Consensus 112 ~~~~~~~~~D~Ila------s----------Dv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 112 SDLLEPHSFDVILA------S----------DVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp HHHHS-SSBSEEEE------E----------S--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccccccccCCEEEE------e----------cccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 01123467999873 2 134677899999999999999999998886543
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=90.76 E-value=9.2 Score=32.66 Aligned_cols=128 Identities=21% Similarity=0.357 Sum_probs=78.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
++.|||=+|=||=++=..|.+. .++.+.+.|..++ ++.+..+.|+.|+.+==-+.|. .+..++
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~----k~v~g~GvEid~~----------~v~~cv~rGv~Viq~Dld~gL~---~f~d~s 75 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE----KQVDGYGVEIDPD----------NVAACVARGVSVIQGDLDEGLA---DFPDQS 75 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh----cCCeEEEEecCHH----------HHHHHHHcCCCEEECCHHHhHh---hCCCCC
Confidence 3689999994444444444443 3678888885433 4556666899877652112333 367899
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC--------------------CCCCC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD--------------------DHPYN 157 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~--------------------~~Py~ 157 (214)
||.||.+- ..+.++.=.++|.. +|+-+.++.||.-+ .-||.
T Consensus 76 FD~VIlsq------------tLQ~~~~P~~vL~E-------mlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 76 FDYVILSQ------------TLQAVRRPDEVLEE-------MLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYE 136 (193)
T ss_pred ccEEehHh------------HHHhHhHHHHHHHH-------HHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 99999752 11222333445443 45556666666432 23665
Q ss_pred ccc-----------HhhHHHhcCCEEEEEecCCCC
Q 041136 158 QWN-----------VMGLADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 158 ~W~-----------i~~lA~~~gl~l~~~~~F~~~ 181 (214)
.|+ .++++++.|+...++..++..
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 554 678999999999998877754
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=90.76 E-value=3.1 Score=35.75 Aligned_cols=140 Identities=21% Similarity=0.283 Sum_probs=81.4
Q ss_pred CCCCC-eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-C--
Q 041136 16 YTNNQ-RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-P-- 91 (214)
Q Consensus 16 ~~~~~-~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~-- 91 (214)
+.+.. +||.||=|.=-=+.-+|+++. +|+=..=|-.+.+. +.....+++-...++.-=..+|+++-.-. .
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP---~l~WqPSD~~~~~~---~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~ 95 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALP---HLTWQPSDPDDNLR---PSIRAWIAEAGLPNVRPPLALDVSAPPWPWELP 95 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCC---CCEEcCCCCChHHH---hhHHHHHHhcCCcccCCCeEeecCCCCCccccc
Confidence 34445 499999887666666788874 34433333333322 12223333332223433345677754211 0
Q ss_pred -CCCCCcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE---ecCCCCC----------
Q 041136 92 -TLSQMKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT---LRDDHPY---------- 156 (214)
Q Consensus 92 -~~~~~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT---l~~~~Py---------- 156 (214)
.+....||.|+- |.=|+-. ......+|+.|.++|+++|.+.+. -.+|+..
T Consensus 96 ~~~~~~~~D~i~~~N~lHI~p---------------~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~s 160 (204)
T PF06080_consen 96 APLSPESFDAIFCINMLHISP---------------WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDAS 160 (204)
T ss_pred cccCCCCcceeeehhHHHhcC---------------HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHH
Confidence 123568898864 4444432 457899999999999999998776 1122210
Q ss_pred -----Cccc------HhhHHHhcCCEEEEEe
Q 041136 157 -----NQWN------VMGLADKLGLVLKEKV 176 (214)
Q Consensus 157 -----~~W~------i~~lA~~~gl~l~~~~ 176 (214)
-.|. +..+|+++||.+.+..
T Consensus 161 Lr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~ 191 (204)
T PF06080_consen 161 LRSRDPEWGIRDIEDVEALAAAHGLELEEDI 191 (204)
T ss_pred HhcCCCCcCccCHHHHHHHHHHCCCccCccc
Confidence 0243 5579999999998754
|
The function of this family is unknown. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.22 Score=36.19 Aligned_cols=99 Identities=17% Similarity=0.161 Sum_probs=45.6
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|-||=|.=+++..|++.+. ..--|+.|..+.+.+ .+++.+..... .......++..++... ...++||.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~---~~~~~~~D~s~~~l~---~a~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~fD~V~ 71 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP---DARYTGVDISPSMLE---RARERLAELGN-DNFERLRFDVLDLFDY--DPPESFDLVV 71 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----EEEEEEEESSSSTTS---TTCCCHHHCT----EEEEE--SSS---C--CC----SEEE
T ss_pred CEeCccChHHHHHHHHhCC---CCEEEEEECCHHHHH---HHHHHhhhcCC-cceeEEEeecCChhhc--ccccccceeh
Confidence 4466444444444888762 455567775444332 23333444332 2233445555554432 2226899999
Q ss_pred EcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE
Q 041136 103 FNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV 146 (214)
Q Consensus 103 FNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i 146 (214)
.++-..=. +-+..+++++..+|+|||.+
T Consensus 72 ~~~vl~~l----------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 72 ASNVLHHL----------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EE-TTS------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHhhh----------------hhHHHHHHHHHHHcCCCCCC
Confidence 88543221 23557888999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=90.59 E-value=2.8 Score=35.80 Aligned_cols=100 Identities=16% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|=|.=.++..|++. +..+ ++.|..+++.+ .+.++.. .. -+...|+..+. +...
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v--~~~D~s~~~l~---~a~~~~~-----~~-~~~~~d~~~~~----~~~~ 102 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRER---GSQV--TALDLSPPMLA---QARQKDA-----AD-HYLAGDIESLP----LATA 102 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHc---CCeE--EEEECCHHHHH---HHHhhCC-----CC-CEEEcCcccCc----CCCC
Confidence 45678999984443445556653 2344 45564333331 1222211 11 23445665543 4556
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+||.|+.|++..-.. -+..++..+..+|++||.+.++.
T Consensus 103 ~fD~V~s~~~l~~~~----------------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 103 TFDLAWSNLAVQWCG----------------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cEEEEEECchhhhcC----------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 899999998754221 12456777889999999997763
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.33 Score=43.19 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=88.1
Q ss_pred CCCCCeEEEE--ecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 16 YTNNQRILLV--GEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 16 ~~~~~~ILlV--GeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
=..+++||=. |-|.-|. .||...+....|+|.=.+.. -+. ...+|++.+--.++.+.. .|++++... .
T Consensus 83 ~~~~~~VLD~CAapGgKt~--~la~~~~~~g~i~A~D~~~~-Rl~----~l~~~~~r~g~~~v~~~~-~D~~~~~~~--~ 152 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTT--HLAELMGNKGEIVANDISPK-RLK----RLKENLKRLGVFNVIVIN-ADARKLDPK--K 152 (283)
T ss_dssp TTTTSEEEESSCTTSHHHH--HHHHHTTTTSEEEEEESSHH-HHH----HHHHHHHHTT-SSEEEEE-SHHHHHHHH--H
T ss_pred ccccccccccccCCCCcee--eeeecccchhHHHHhccCHH-HHH----HHHHHHHhcCCceEEEEe-ecccccccc--c
Confidence 3455566543 4666665 47777765556777644432 222 244566655444444444 899887431 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCccc------HHHHHHhHHHHHHHHHHHHhcc----CCCCEEEEEecCCCCC-CcccHh
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQD------TNLIKRHKNLLEAFLKNGREML----GEGGEVHVTLRDDHPY-NQWNVM 162 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL----~~~G~i~VTl~~~~Py-~~W~i~ 162 (214)
....||+|+-+=|+.|.+.=..... ...+....++=...+.+|.+++ ++||.+.-+.|.=.|- +.-.|.
T Consensus 153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~ 232 (283)
T PF01189_consen 153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVE 232 (283)
T ss_dssp HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHH
T ss_pred cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHH
Confidence 2346999999999998732111111 1123334455567788999999 9999998888875553 344455
Q ss_pred hHHHhc-CCEEEE
Q 041136 163 GLADKL-GLVLKE 174 (214)
Q Consensus 163 ~lA~~~-gl~l~~ 174 (214)
...+++ .+.+..
T Consensus 233 ~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 233 KFLKRHPDFELVP 245 (283)
T ss_dssp HHHHHSTSEEEEC
T ss_pred HHHHhCCCcEEEe
Confidence 544444 565543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.2 Score=39.92 Aligned_cols=110 Identities=20% Similarity=0.259 Sum_probs=68.9
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
++||++|=|+=+.++.+.++.. -..+++.-+|.. -++.++|-.-..+... .--+.|+.+ |+-+.-+. ...+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~-Dg~~~v~~---~~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIID-DGVEFLRD---CEEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEec-cHHHHHHh---CCCcC
Confidence 6999999999999999999875 457888888864 3555555211111111 223444443 33332111 12379
Q ss_pred cEEEEcCCC-CCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 99 DVIIFNFPH-AGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 99 D~IiFNFPH-~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
|.||-+--- .|... .-.=..||+.|...|+++|-+.+-
T Consensus 151 DvIi~D~tdp~gp~~-------------~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 151 DVIIVDSTDPVGPAE-------------ALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CEEEEcCCCCCCccc-------------ccCCHHHHHHHHHhcCCCcEEEEe
Confidence 999988533 34311 123578999999999999976555
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.04 E-value=4.1 Score=38.57 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=81.8
Q ss_pred CCCeEEEEecCchhHHHHHHHH--hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CC-EEEEccccccCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARA--FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GC-LVLHGVNVHTMDRHP 91 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~--~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~-~Vl~~VDAt~L~~~~ 91 (214)
.-.++|++|-||= +|+-+. +..-..|+-.-+|.+-.-..+ -.+.+..++.. +- .-.++-||-+--+
T Consensus 289 ~a~~vLvlGGGDG---LAlRellkyP~~~qI~lVdLDP~miela~---~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr-- 360 (508)
T COG4262 289 GARSVLVLGGGDG---LALRELLKYPQVEQITLVDLDPRMIELAS---HATVLRALNQGSFSDPRVTVVNDDAFQWLR-- 360 (508)
T ss_pred ccceEEEEcCCch---HHHHHHHhCCCcceEEEEecCHHHHHHhh---hhhHhhhhccCCccCCeeEEEeccHHHHHH--
Confidence 4567999998873 344333 332356777778865321111 11233444321 11 2234445544211
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC----CcccHhhHHHh
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY----NQWNVMGLADK 167 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py----~~W~i~~lA~~ 167 (214)
-....||.||-++|.....+ .-|--=..|+.+++.-|+++|.+.|- .|.|| .-|.|..--++
T Consensus 361 -~a~~~fD~vIVDl~DP~tps-----------~~rlYS~eFY~ll~~~l~e~Gl~VvQ--ags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 361 -TAADMFDVVIVDLPDPSTPS-----------IGRLYSVEFYRLLSRHLAETGLMVVQ--AGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred -hhcccccEEEEeCCCCCCcc-----------hhhhhhHHHHHHHHHhcCcCceEEEe--cCCCccCCceeeeehhHHHh
Confidence 13468999999999987542 12334568999999999999987765 44555 47999998899
Q ss_pred cCCEE
Q 041136 168 LGLVL 172 (214)
Q Consensus 168 ~gl~l 172 (214)
+|+..
T Consensus 427 AG~~~ 431 (508)
T COG4262 427 AGYRV 431 (508)
T ss_pred Cccee
Confidence 88654
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=89.90 E-value=7 Score=32.12 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=43.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~~ 95 (214)
+.+.+||-||=|+=.++..|++..+ ..+++.|..++..+ ..+..++.++ ..|+.. +. .+..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~----~~~~giD~s~~~i~----------~a~~~~~~~~-~~d~~~~l~---~~~~ 73 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQ----VRGYGIEIDQDGVL----------ACVARGVNVI-QGDLDEGLE---AFPD 73 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccC----CcEEEEeCCHHHHH----------HHHHcCCeEE-EEEhhhccc---ccCC
Confidence 3567999999555566777876543 23467785444332 2223455544 345543 21 2445
Q ss_pred CcccEEEEcCC
Q 041136 96 MKFDVIIFNFP 106 (214)
Q Consensus 96 ~~FD~IiFNFP 106 (214)
++||.|+.|.+
T Consensus 74 ~sfD~Vi~~~~ 84 (194)
T TIGR02081 74 KSFDYVILSQT 84 (194)
T ss_pred CCcCEEEEhhH
Confidence 78999999976
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=89.82 E-value=2.8 Score=36.80 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=63.9
Q ss_pred CCCCeEEEEe--cCchhHHHH--HHHHhCC----CCcEEEeecCChHH--HHh-cCccHH-HHH--HHHHh----C-C--
Q 041136 17 TNNQRILLVG--EGDFSFSDC--LARAFGS----ATNMVASSLDSERT--LKT-KHWTSQ-AHL--QSLWS----R-G-- 75 (214)
Q Consensus 17 ~~~~~ILlVG--eGnFSFS~s--La~~~~~----~~~l~ATs~ds~~~--l~~-kY~~a~-~ni--~~L~~----~-g-- 75 (214)
.+..+||-+| .|.-.+|+| |++.... ...|+||=++...- ..+ -|+... .++ ..++. . |
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 4557899987 777655554 5565432 34577765554321 111 233211 111 01110 0 1
Q ss_pred --------CEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 76 --------CLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 76 --------~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
...+...|+.++. +..++||.|+...= .+..+.......++....+|+|||.+.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~----~~~~~fD~I~crnv--------------l~yf~~~~~~~~l~~l~~~L~pGG~L~ 239 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAES----PPLGDFDLIFCRNV--------------LIYFDEPTQRKLLNRFAEALKPGGYLF 239 (264)
T ss_pred EEChHHhCcCEEeeccCCCCC----CccCCCCEEEechh--------------HHhCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 1222334554432 23467999986211 122234556677778889999999999
Q ss_pred EEecCCC
Q 041136 148 VTLRDDH 154 (214)
Q Consensus 148 VTl~~~~ 154 (214)
|-..+.-
T Consensus 240 lg~~E~~ 246 (264)
T smart00138 240 LGHSESL 246 (264)
T ss_pred EECcccC
Confidence 9876644
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=4.4 Score=35.32 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=61.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|=|.=.++..|++.+........++.|..++..+ .|.++ ..++.++. -|+.++. +...+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~---~A~~~-----~~~~~~~~-~d~~~lp----~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIK---YAAKR-----YPQVTFCV-ASSHRLP----FADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHH---HHHHh-----CCCCeEEE-eecccCC----CcCCc
Confidence 457899999444445666877764222245688885444432 12221 12344433 3666653 55678
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhh
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMG 163 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~ 163 (214)
||.|+.+|-. . . ++....+|++||.+.+... .|...|.+..
T Consensus 152 fD~I~~~~~~--~-------~--------------~~e~~rvLkpgG~li~~~p--~~~~l~el~~ 192 (272)
T PRK11088 152 LDAIIRIYAP--C-------K--------------AEELARVVKPGGIVITVTP--GPRHLFELKG 192 (272)
T ss_pred eeEEEEecCC--C-------C--------------HHHHHhhccCCCEEEEEeC--CCcchHHHHH
Confidence 9999987621 0 0 1224568999999866532 2345565544
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=89.68 E-value=8.6 Score=32.73 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH----HH---H-hCCC-EEEEccccccC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ----SL---W-SRGC-LVLHGVNVHTM 87 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~----~L---~-~~g~-~Vl~~VDAt~L 87 (214)
.+..|||.+|.|.=--+..||++ | . -+|+.|.-+...++- .++.++. .+ + ..+. .-+.-.|..++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~-G--~--~V~gvD~S~~Ai~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ-G--H--RVLGVELSEIAVEQF-FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC-C--C--eEEEEeCCHHHHHHH-HHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 46679999998877777778863 3 3 456677433322210 0000110 00 0 0011 12234455555
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEec
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLR 151 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~ 151 (214)
... ....||.|+=. +. .+..+.++-..+++....+|+|||.+ .+|+.
T Consensus 107 ~~~---~~~~fD~i~D~----~~----------~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 107 TAA---DLGPVDAVYDR----AA----------LIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred Ccc---cCCCcCEEEec----hh----------hccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 421 12346655321 10 01224566777999999999999984 66665
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=88.99 E-value=3.6 Score=34.32 Aligned_cols=115 Identities=17% Similarity=0.051 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.-.+.++|=++=|.=+++..++.. + +. .+|..|......+ .+.+|++.+...+-..++.-|+.+.-+. ...
T Consensus 46 ~~~~g~~vLDLfaGsG~lglea~sr-g-a~--~v~~vE~~~~a~~---~~~~N~~~~~~~~~~~~~~~D~~~~l~~-~~~ 117 (189)
T TIGR00095 46 PEIQGAHLLDVFAGSGLLGEEALSR-G-AK--VAFLEEDDRKANQ---TLKENLALLKSGEQAEVVRNSALRALKF-LAK 117 (189)
T ss_pred HhcCCCEEEEecCCCcHHHHHHHhC-C-CC--EEEEEeCCHHHHH---HHHHHHHHhCCcccEEEEehhHHHHHHH-hhc
Confidence 3446788877765544555445543 2 22 3566665544432 4677888876433334577788442111 011
Q ss_pred C-CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 95 Q-MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 95 ~-~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
. ..||.|+.+.|.... ...+++..... ..+|+++|-|.+.+..
T Consensus 118 ~~~~~dvv~~DPPy~~~-------------~~~~~l~~l~~--~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 118 KPTFDNVIYLDPPFFNG-------------ALQALLELCEN--NWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCceEEEECcCCCCC-------------cHHHHHHHHHH--CCCCCCCeEEEEEecC
Confidence 2 346777777777421 12445554332 4689999988887554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=88.78 E-value=5.6 Score=32.03 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=46.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=.++..|++. + ..++|.-.|. .+. ..+++|+.. ..++. ++.-|+.++. +...
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~--~~v~~vE~~~--~~~---~~~~~~~~~--~~~v~-ii~~D~~~~~----~~~~ 76 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-A--ARVTAIEIDP--RLA---PRLREKFAA--ADNLT-VIHGDALKFD----LPKL 76 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-C--CeEEEEECCH--HHH---HHHHHHhcc--CCCEE-EEECchhcCC----cccc
Confidence 45679999996666666667765 2 3565555553 332 134444432 12344 4566787764 2334
Q ss_pred cccEEEEcCCC
Q 041136 97 KFDVIIFNFPH 107 (214)
Q Consensus 97 ~FD~IiFNFPH 107 (214)
.||.|+.|.|.
T Consensus 77 ~~d~vi~n~Py 87 (169)
T smart00650 77 QPYKVVGNLPY 87 (169)
T ss_pred CCCEEEECCCc
Confidence 69999999997
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.68 E-value=1.9 Score=38.66 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=65.6
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH--HHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ--SLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~--~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+++||=||=|.==-|-.||+.= =..|+.|--+++.+ .|++... -..+.++....+-+.+.++.. ..
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-----a~V~GID~s~~~V~---vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----~~ 157 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-----AQVTGIDASDDMVE---VANEHKKMDPVLEGAIAYRLEYEDTDVEGL----TG 157 (282)
T ss_pred CceEEEeccCccccchhhHhhC-----CeeEeecccHHHHH---HHHHhhhcCchhccccceeeehhhcchhhc----cc
Confidence 5779999944332333377642 24567785454443 2333321 123345666666666766652 34
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.||.|+-- + +-.|-+-+..|..++.++|+|+|.++||
T Consensus 158 ~fDaVvcs---------------e-vleHV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 158 KFDAVVCS---------------E-VLEHVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred ccceeeeH---------------H-HHHHHhCHHHHHHHHHHHhCCCCceEee
Confidence 49999841 2 4468888999999999999999999887
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.71 E-value=2.1 Score=38.08 Aligned_cols=85 Identities=19% Similarity=0.319 Sum_probs=53.0
Q ss_pred CCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecCC
Q 041136 75 GCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRDD 153 (214)
Q Consensus 75 g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~ 153 (214)
++.|+.| ||-++-+ .|...+||.||-+.|-...- -.---..|+.--..+|++||++ |-+=.-|
T Consensus 186 ~i~iilG-D~~e~V~--~~~D~sfDaIiHDPPRfS~A-------------geLYseefY~El~RiLkrgGrlFHYvG~Pg 249 (287)
T COG2521 186 AIKIILG-DAYEVVK--DFDDESFDAIIHDPPRFSLA-------------GELYSEEFYRELYRILKRGGRLFHYVGNPG 249 (287)
T ss_pred ccEEecc-cHHHHHh--cCCccccceEeeCCCccchh-------------hhHhHHHHHHHHHHHcCcCCcEEEEeCCCC
Confidence 3455554 3333322 37788999999999987641 1112345666666899999996 8883333
Q ss_pred CCCCccc----HhhHHHhcCCEEEEE
Q 041136 154 HPYNQWN----VMGLADKLGLVLKEK 175 (214)
Q Consensus 154 ~Py~~W~----i~~lA~~~gl~l~~~ 175 (214)
+-|.--| |.+...+.||...+.
T Consensus 250 ~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 250 KRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred cccccCChhHHHHHHHHhcCceeeee
Confidence 3344444 455667789986553
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=1.9 Score=37.15 Aligned_cols=95 Identities=14% Similarity=0.150 Sum_probs=56.9
Q ss_pred EEEEccccccCCCCCCCCCCcccEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 77 LVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 77 ~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
++++| ||.++-+ .+..+++|.||...|=- |.+.. .++... .....+.+..+|..+..+|+++|.+.+- +.
T Consensus 3 ~l~~g-D~le~l~--~lpd~SVDLIiTDPPY~i~~~~~-~~~~~~-~~~~~ew~~~~l~E~~RVLKpgg~l~if-~~--- 73 (227)
T PRK13699 3 RFILG-NCIDVMA--RFPDNAVDFILTDPPYLVGFRDR-QGRTIA-GDKTDEWLQPACNEMYRVLKKDALMVSF-YG--- 73 (227)
T ss_pred eEEec-hHHHHHH--hCCccccceEEeCCCcccccccC-CCcccc-cccHHHHHHHHHHHHHHHcCCCCEEEEE-ec---
Confidence 34444 7765432 36788999999999985 32110 111100 0112467889999999999998877553 11
Q ss_pred CCcc-cHhhHHHhcCCEEEEEecCCC
Q 041136 156 YNQW-NVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 156 y~~W-~i~~lA~~~gl~l~~~~~F~~ 180 (214)
++.. .+..+..+.|+.+....-.+.
T Consensus 74 ~~~~~~~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 74 WNRVDRFMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred cccHHHHHHHHHHCCCEEeeEEEEEC
Confidence 1111 134456788998887665554
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.95 E-value=4.3 Score=35.04 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=47.5
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC-----
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL----- 93 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~----- 93 (214)
+.+|+.|=| ...+++|+.+..+.+|++++.+.. . .++..+.|+..|.. ..+.+|+++.+....+
T Consensus 3 k~~lItGa~--gIG~~la~~l~~G~~Vv~~~r~~~-~-------~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~ 72 (275)
T PRK06940 3 EVVVVIGAG--GIGQAIARRVGAGKKVLLADYNEE-N-------LEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQ 72 (275)
T ss_pred CEEEEECCC--hHHHHHHHHHhCCCEEEEEeCCHH-H-------HHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHH
Confidence 467777754 466678887766678999887642 2 22234555555654 4577898875442111
Q ss_pred CCCcccEEEEcCC
Q 041136 94 SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ~~~~FD~IiFNFP 106 (214)
...++|.||.|--
T Consensus 73 ~~g~id~li~nAG 85 (275)
T PRK06940 73 TLGPVTGLVHTAG 85 (275)
T ss_pred hcCCCCEEEECCC
Confidence 1246899998854
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=86.69 E-value=8.1 Score=34.41 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=64.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEE-EccccccCCCCC-CCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVL-HGVNVHTMDRHP-TLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl-~~VDAt~L~~~~-~~~ 94 (214)
.+..+||-+|=|+=.++..|++++.. ....+++|-.+++.+ .+.+++..- .-++.|. ..-|.++....+ ...
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~---~a~~~l~~~-~p~~~v~~i~gD~~~~~~~~~~~~ 135 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALK---ESAAALAAD-YPQLEVHGICADFTQPLALPPEPA 135 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHH---HHHHHHHhh-CCCceEEEEEEcccchhhhhcccc
Confidence 35678999999999999999998742 244678885554442 344444321 1234442 334766532211 111
Q ss_pred CCcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 95 QMKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 95 ~~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
. ..+.|+| ..+ .|- ..++-...||+.+...|+|||.+.|.+-
T Consensus 136 ~-~~~~~~~~gs~-~~~-------------~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 136 A-GRRLGFFPGST-IGN-------------FTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred c-CCeEEEEeccc-ccC-------------CCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 1 1222332 111 111 1233456888999999999999887653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=86.65 E-value=12 Score=33.90 Aligned_cols=112 Identities=13% Similarity=0.216 Sum_probs=67.4
Q ss_pred CCCeEEEEecCchhHH-HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFS-DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS-~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++||.||=|..=++ ..+++.+.+ +-..+++|..++..+ .|.+++....... -.-+.-.||.++.. ..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p--~~~~~giD~d~~ai~---~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----~l 193 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLP--TTSFHNFDIDPSAND---VARRLVSSDPDLSKRMFFHTADVMDVTE----SL 193 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCC--CCEEEEEeCCHHHHH---HHHHHhhhccCccCCcEEEECchhhccc----cc
Confidence 6789999998877553 334444433 447788887766553 4666664422222 24445577876522 13
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
..||.|... =-++.. +. ..+ ..|+.....|++||.+.+-...|
T Consensus 194 ~~FDlVF~~-ALi~~d---k~-------~k~----~vL~~l~~~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 194 KEYDVVFLA-ALVGMD---KE-------EKV----KVIEHLGKHMAPGALLMLRSAHG 236 (296)
T ss_pred CCcCEEEEe-cccccc---cc-------cHH----HHHHHHHHhcCCCcEEEEecccc
Confidence 569999887 222331 01 112 23445668899999999887554
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=86.58 E-value=2 Score=34.57 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=37.9
Q ss_pred CCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 75 GCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 75 g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
++.++.+ |+.+|. +..++||.|+.+| +.. |-.=...+++.+..+|+|||.+.|.-.
T Consensus 27 ~i~~~~~-d~~~lp----~~~~~fD~v~~~~---~l~-------------~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 27 CIEWIEG-DAIDLP----FDDCEFDAVTMGY---GLR-------------NVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred ceEEEEe-chhhCC----CCCCCeeEEEecc---hhh-------------cCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 3566665 888874 5667899999875 110 000124677889999999999977643
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=86.55 E-value=7.4 Score=33.00 Aligned_cols=102 Identities=20% Similarity=0.282 Sum_probs=62.1
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
...++...+||=||-|.=+++.+|++++. ++-+|.+|-.+.+. .+.+ ..-.-+..-|.. ..
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P---~l~~~v~Dlp~v~~----~~~~-------~~rv~~~~gd~f--~~--- 155 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYP---NLRATVFDLPEVIE----QAKE-------ADRVEFVPGDFF--DP--- 155 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHST---TSEEEEEE-HHHHC----CHHH-------TTTEEEEES-TT--TC---
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCC---CCcceeeccHhhhh----cccc-------ccccccccccHH--hh---
Confidence 34677888999999888888888999985 67899999866543 3433 233333444444 22
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCC--CEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEG--GEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~--G~i~VT 149 (214)
+- . +|.|++..=-.-. ..+-....++.+...|+|+ |+|.|.
T Consensus 156 ~P-~-~D~~~l~~vLh~~--------------~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 156 LP-V-ADVYLLRHVLHDW--------------SDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp CS-S-ESEEEEESSGGGS---------------HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hc-c-ccceeeehhhhhc--------------chHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 22 2 8998884322122 1223334455577779988 998665
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=85.90 E-value=11 Score=33.95 Aligned_cols=120 Identities=23% Similarity=0.252 Sum_probs=70.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHH-hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARA-FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~-~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+++||=||-| |=-+|+|-. +| +..++|.=.|....- .+.+|++...-.. .+.... .. ....
T Consensus 160 ~~g~~vLDvG~G--SGILaiaA~klG-A~~v~a~DiDp~Av~-----~a~~N~~~N~~~~-~~~v~~----~~---~~~~ 223 (295)
T PF06325_consen 160 KPGKRVLDVGCG--SGILAIAAAKLG-AKKVVAIDIDPLAVE-----AARENAELNGVED-RIEVSL----SE---DLVE 223 (295)
T ss_dssp STTSEEEEES-T--TSHHHHHHHHTT-BSEEEEEESSCHHHH-----HHHHHHHHTT-TT-CEEESC----TS---CTCC
T ss_pred cCCCEEEEeCCc--HHHHHHHHHHcC-CCeEEEecCCHHHHH-----HHHHHHHHcCCCe-eEEEEE----ec---cccc
Confidence 456799999966 334445333 44 457888888876432 4777766553222 332221 11 1223
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc-HhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN-VMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~-i~~lA~~~gl~l~~ 174 (214)
.+||.|+-|= ....|.........+|+++|.+.++ |-.....+ |.+..+ .||.+.+
T Consensus 224 ~~~dlvvANI-------------------~~~vL~~l~~~~~~~l~~~G~lIlS---GIl~~~~~~v~~a~~-~g~~~~~ 280 (295)
T PF06325_consen 224 GKFDLVVANI-------------------LADVLLELAPDIASLLKPGGYLILS---GILEEQEDEVIEAYK-QGFELVE 280 (295)
T ss_dssp S-EEEEEEES--------------------HHHHHHHHHHCHHHEEEEEEEEEE---EEEGGGHHHHHHHHH-TTEEEEE
T ss_pred ccCCEEEECC-------------------CHHHHHHHHHHHHHhhCCCCEEEEc---cccHHHHHHHHHHHH-CCCEEEE
Confidence 8899999772 2445666777778889999999887 33223333 344334 4998876
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 281 ~ 281 (295)
T PF06325_consen 281 E 281 (295)
T ss_dssp E
T ss_pred E
Confidence 4
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=85.05 E-value=6.2 Score=36.76 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=60.9
Q ss_pred eEEEE--ecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 21 RILLV--GEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 21 ~ILlV--GeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
+||-+ |-|-++.- .++..+....|+|.=.+ .+.. ....+|++.+...++.|.. -||.++-.. ...+|
T Consensus 47 ~vLD~faGsG~rgir--~a~e~~ga~~Vv~nD~n--~~Av---~~i~~N~~~N~~~~~~v~~-~Da~~~l~~---~~~~f 115 (374)
T TIGR00308 47 NIADALSASGIRAIR--YAHEIEGVREVFANDIN--PKAV---ESIKNNVEYNSVENIEVPN-EDAANVLRY---RNRKF 115 (374)
T ss_pred EEEECCCchhHHHHH--HHhhCCCCCEEEEEeCC--HHHH---HHHHHHHHHhCCCcEEEEc-hhHHHHHHH---hCCCC
Confidence 55444 44544443 55543223456664443 3332 2477788766543444444 477765332 13579
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
|.|..+.| |.. ..|+.+|-+.++++|-++||--|
T Consensus 116 DvIdlDPf--Gs~------------------~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 116 HVIDIDPF--GTP------------------APFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred CEEEeCCC--CCc------------------HHHHHHHHHhcccCCEEEEEecc
Confidence 99999986 431 14888999999999999999444
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=84.70 E-value=5.9 Score=34.78 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=61.8
Q ss_pred CCCCCCeEEEEecC-chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccC-CCCC
Q 041136 15 HYTNNQRILLVGEG-DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTM-DRHP 91 (214)
Q Consensus 15 ~~~~~~~ILlVGeG-nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L-~~~~ 91 (214)
-....++||.||-+ .+| ++++|+..+....|+ ++|..++.. .-|.+|++..-- ..+.++.| ||.+. .+..
T Consensus 76 ~~~~ak~iLEiGT~~GyS-al~la~al~~~g~v~--tiE~~~~~~---~~Ar~~~~~ag~~~~I~~~~G-~a~e~L~~l~ 148 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYS-LLATALALPEDGKIL--AMDINRENY---ELGLPVIQKAGVAHKIDFREG-PALPVLDQMI 148 (247)
T ss_pred HHhCCCEEEEEeChhhHH-HHHHHhhCCCCCEEE--EEeCCHHHH---HHHHHHHHHCCCCCceEEEec-cHHHHHHHHH
Confidence 35678899999963 233 455677665434444 445434333 236677765432 23445544 55432 1100
Q ss_pred -CC-CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 92 -TL-SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 92 -~~-~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.. ...+||.|..+-- +..-..+|..+.++|++||-|.+
T Consensus 149 ~~~~~~~~fD~iFiDad-------------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 149 EDGKYHGTFDFIFVDAD-------------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred hccccCCcccEEEecCC-------------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 00 1357999988621 22334677888899999998765
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=84.38 E-value=3.3 Score=33.53 Aligned_cols=92 Identities=17% Similarity=0.193 Sum_probs=48.0
Q ss_pred eecCChHHHHhcCccHHHHHHHHHhCCC---EEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHh
Q 041136 49 SSLDSERTLKTKHWTSQAHLQSLWSRGC---LVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRH 125 (214)
Q Consensus 49 Ts~ds~~~l~~kY~~a~~ni~~L~~~g~---~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n 125 (214)
-+||.+++..+ .. -+.|++.|. ..++...=.+|.++ +...+.|.||||+=-..++ ++.-- -.
T Consensus 3 yaFDIQ~~Ai~---~T---~~rL~~~~~~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPgg--Dk~i~-----T~ 67 (140)
T PF06962_consen 3 YAFDIQEEAIE---NT---RERLEEAGLEDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGG--DKSIT-----TK 67 (140)
T ss_dssp EEEES-HHHHH---HH---HHHHHHTT-GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS---TTSB-------
T ss_pred EEEECHHHHHH---HH---HHHHHhcCCCCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCC--CCCCC-----cC
Confidence 36787776542 23 344444432 33344344445543 3336899999998666432 22211 12
Q ss_pred HHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 126 KNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 126 ~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.+---.=++.|..+|++||.|.|++=-|.|
T Consensus 68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 68 PETTLKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred cHHHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 233334467788999999999999888877
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.28 E-value=1 Score=37.37 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=44.8
Q ss_pred EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEE
Q 041136 23 LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVII 102 (214)
Q Consensus 23 LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~Ii 102 (214)
|-.|-|.+||+.|.-+ +-.+-++|-.++..+ -+..|.++++- .+ -+...|.+++. +.+..||..|
T Consensus 55 LgcgcGmLs~a~sm~~------~e~vlGfDIdpeALE---If~rNaeEfEv-qi-dlLqcdildle----~~~g~fDtav 119 (185)
T KOG3420|consen 55 LGCGCGMLSIAFSMPK------NESVLGFDIDPEALE---IFTRNAEEFEV-QI-DLLQCDILDLE----LKGGIFDTAV 119 (185)
T ss_pred hcCchhhhHHHhhcCC------CceEEeeecCHHHHH---HHhhchHHhhh-hh-heeeeeccchh----ccCCeEeeEE
Confidence 5667999998755432 344556675544432 35566666652 22 34455666654 5668999999
Q ss_pred EcCCCC
Q 041136 103 FNFPHA 108 (214)
Q Consensus 103 FNFPH~ 108 (214)
||.|.=
T Consensus 120 iNppFG 125 (185)
T KOG3420|consen 120 INPPFG 125 (185)
T ss_pred ecCCCC
Confidence 999973
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.53 E-value=26 Score=31.92 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=72.8
Q ss_pred CCCeEEEEecCchhHHHHHHHH-hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARA-FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~-~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+++|=||-| |=-+|+|-+ +| +..++|+=+|+...-. +.+|.+.+ |+.- .+-+............
T Consensus 162 ~g~~vlDvGcG--SGILaIAa~kLG-A~~v~g~DiDp~AV~a-----a~eNa~~N---~v~~--~~~~~~~~~~~~~~~~ 228 (300)
T COG2264 162 KGKTVLDVGCG--SGILAIAAAKLG-AKKVVGVDIDPQAVEA-----ARENARLN---GVEL--LVQAKGFLLLEVPENG 228 (300)
T ss_pred CCCEEEEecCC--hhHHHHHHHHcC-CceEEEecCCHHHHHH-----HHHHHHHc---CCch--hhhcccccchhhcccC
Confidence 67889999955 233334333 44 5579999888876533 55565543 3331 0001111111112346
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE-ecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT-LRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT-l~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
+||.||-|= +. +.|..+..-...+|+|+|.+.++ +-. -..+.|.+.....|+.+.+.
T Consensus 229 ~~DvIVANI--LA-----------------~vl~~La~~~~~~lkpgg~lIlSGIl~---~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 229 PFDVIVANI--LA-----------------EVLVELAPDIKRLLKPGGRLILSGILE---DQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred cccEEEehh--hH-----------------HHHHHHHHHHHHHcCCCceEEEEeehH---hHHHHHHHHHHhCCCeEeEE
Confidence 899999885 22 12334445566789999998777 111 13778888888899998874
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=82.06 E-value=14 Score=31.12 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=42.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||=|.=.++..|++.++ . ...|+.|..++..+ .|.+++ .++.+. ..|+.+ .+..
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~-~--~~v~giDiS~~~l~---~A~~~~-----~~~~~~-~~d~~~-----~~~~ 103 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP-F--KHIYGVEINEYAVE---KAKAYL-----PNINII-QGSLFD-----PFKD 103 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC-C--CeEEEEECCHHHHH---HHHhhC-----CCCcEE-EeeccC-----CCCC
Confidence 45678899999444444555777653 2 34566675444432 233322 134443 335543 2456
Q ss_pred CcccEEEEcCC
Q 041136 96 MKFDVIIFNFP 106 (214)
Q Consensus 96 ~~FD~IiFNFP 106 (214)
.+||.|+.+.-
T Consensus 104 ~sfD~V~~~~v 114 (204)
T TIGR03587 104 NFFDLVLTKGV 114 (204)
T ss_pred CCEEEEEECCh
Confidence 78999998764
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=81.48 E-value=9.2 Score=31.14 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=46.7
Q ss_pred ccEEEEcCCCCCCCC----CCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC-CEE
Q 041136 98 FDVIIFNFPHAGHSP----PLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG-LVL 172 (214)
Q Consensus 98 FD~IiFNFPH~G~~~----~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g-l~l 172 (214)
.|.||...|=-.... .....+.+ ...-.+.+..++..+..+|+++|.+.|-+-+-. ...+-+..+....| +.+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~-~~~~~~~~~~~~~g~~~~ 78 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKN-HEEYLEWMEEWLKECYRVLKPGGSIFIFIDDRE-IAGFLFELALEIFGGFFL 78 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCE-ECTHHHHHHHHHHTT-EE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCC-HHHHHHHHHHHHHHHHhhcCCCeeEEEEecchh-hhHHHHHHHHHHhhhhhe
Confidence 388999999775432 01111111 344567899999999999999999988765532 22222333444557 888
Q ss_pred EEEecCCCC
Q 041136 173 KEKVEFLKQ 181 (214)
Q Consensus 173 ~~~~~F~~~ 181 (214)
.........
T Consensus 79 ~~~iiW~K~ 87 (231)
T PF01555_consen 79 RNEIIWNKP 87 (231)
T ss_dssp EEEEEEE-S
T ss_pred eccceeEec
Confidence 776555544
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.02 E-value=12 Score=33.80 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=71.2
Q ss_pred CccccccCCCCCCeEEEEe--cCchhHHHHHHHHhCCC---CcEEEeecCChHHHHhcCccHHHHH--HHHHhCCCEEEE
Q 041136 8 KKVKWISHYTNNQRILLVG--EGDFSFSDCLARAFGSA---TNMVASSLDSERTLKTKHWTSQAHL--QSLWSRGCLVLH 80 (214)
Q Consensus 8 ~~~~~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~---~~l~ATs~ds~~~l~~kY~~a~~ni--~~L~~~g~~Vl~ 80 (214)
+-.-|+.|... .++|=|+ .||..|- |.++..+. .+=..|..|...+.+. -+++.- .-|+...+..+.
T Consensus 91 ~~v~~L~p~~~-m~~lDvaGGTGDiaFr--il~~v~s~~~~~~~~V~v~Dinp~mL~---vgkqRa~~~~l~~~~~~~w~ 164 (296)
T KOG1540|consen 91 MFVSKLGPGKG-MKVLDVAGGTGDIAFR--ILRHVKSQFGDRESKVTVLDINPHMLA---VGKQRAKKRPLKASSRVEWV 164 (296)
T ss_pred HhhhccCCCCC-CeEEEecCCcchhHHH--HHHhhccccCCCCceEEEEeCCHHHHH---HHHHHHhhcCCCcCCceEEE
Confidence 34445666665 7887775 8999887 77765431 2244566774444332 122211 346666677888
Q ss_pred ccccccCCCCCCCCCCcccEEEE-----cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 81 GVNVHTMDRHPTLSQMKFDVIIF-----NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 81 ~VDAt~L~~~~~~~~~~FD~IiF-----NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+-||.+|. |....||+..- |+||.-. =++-|-.+|+|||++.+...
T Consensus 165 ~~dAE~Lp----Fdd~s~D~yTiafGIRN~th~~k---------------------~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 165 EGDAEDLP----FDDDSFDAYTIAFGIRNVTHIQK---------------------ALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred eCCcccCC----CCCCcceeEEEecceecCCCHHH---------------------HHHHHHHhcCCCcEEEEEEc
Confidence 88999996 77888998743 5555321 12347889999999865544
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.27 E-value=21 Score=31.07 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=45.3
Q ss_pred CCeEEEEe-cCchhHHHHHHHHhC-CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCC--
Q 041136 19 NQRILLVG-EGDFSFSDCLARAFG-SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 19 ~~~ILlVG-eGnFSFS~sLa~~~~-~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~-- 93 (214)
+++||+.| .|..- .++++.+. .+.+|+.+..+.+.. ...+.++.++..|.. ..+.+|.++.+....+
T Consensus 55 ~k~vlITGas~gIG--~~~a~~l~~~G~~V~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 55 GRKALITGADSGIG--RATAIAFAREGADIALNYLPEEEQ------DAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CCEEEEecCCCcHH--HHHHHHHHHcCCEEEEEeCCcchH------HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 47899999 45443 34555542 245787776654321 133345566666654 4567888875442111
Q ss_pred ----CCCcccEEEEcCC
Q 041136 94 ----SQMKFDVIIFNFP 106 (214)
Q Consensus 94 ----~~~~FD~IiFNFP 106 (214)
.-.+.|.||.|--
T Consensus 127 ~~~~~~g~iD~lV~nAg 143 (300)
T PRK06128 127 RAVKELGGLDILVNIAG 143 (300)
T ss_pred HHHHHhCCCCEEEECCc
Confidence 1136899998853
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 214 | |||
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.41 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.22 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.2 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.16 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.07 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 97.99 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.98 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 97.96 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 97.92 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 97.91 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 97.88 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 97.85 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 97.85 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 97.83 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 97.8 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.79 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 97.77 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 97.76 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 97.75 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 97.74 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.74 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 97.74 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 97.73 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 97.73 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 97.72 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 97.69 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 97.68 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 97.68 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 97.67 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.65 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 97.64 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 97.63 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 97.62 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.62 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 97.61 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 97.6 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 97.59 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 97.59 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.59 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.56 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 97.56 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.54 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 97.54 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 97.53 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 97.5 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 97.5 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 97.49 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.49 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 97.47 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 97.47 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.47 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 97.45 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 97.45 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.45 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 97.44 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 97.41 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 97.41 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 97.37 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.37 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 97.37 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 97.37 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 97.37 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 97.36 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 97.36 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 97.33 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.32 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 97.32 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.32 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 97.31 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 97.31 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.3 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.29 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 97.25 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.25 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 97.24 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.24 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 97.22 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 97.21 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 97.2 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.2 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 97.15 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.14 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 97.14 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.13 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 97.13 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 97.12 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 97.11 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 97.1 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 97.08 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 97.07 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 97.06 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.05 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.05 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 97.03 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 97.03 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.02 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.01 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 97.01 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 96.99 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 96.99 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 96.98 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 96.97 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 96.95 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 96.95 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 96.93 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 96.93 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 96.91 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 96.9 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 96.89 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 96.89 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 96.89 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 96.88 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 96.87 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 96.87 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 96.86 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 96.85 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 96.83 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 96.83 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 96.82 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 96.79 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 96.79 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 96.78 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 96.76 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 96.75 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 96.73 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 96.72 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 96.72 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 96.72 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 96.72 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 96.71 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 96.71 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 96.69 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.69 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 96.69 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 96.65 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 96.64 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 96.64 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 96.64 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 96.63 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 96.63 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 96.63 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 96.62 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 96.61 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 96.59 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 96.59 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 96.58 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 96.58 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 96.57 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 96.54 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 96.54 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 96.52 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 96.52 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 96.52 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 96.51 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 96.45 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 96.45 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 96.44 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 96.41 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 96.4 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 96.4 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 96.38 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 96.37 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 96.37 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 96.33 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 96.33 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 96.32 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 96.32 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 96.26 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 96.24 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 96.24 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 96.19 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 96.17 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 96.14 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 96.11 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 96.06 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.03 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 96.0 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 95.99 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 95.98 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 95.97 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 95.96 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 95.93 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 95.89 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 95.82 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 95.81 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 95.75 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 95.74 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 95.71 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 95.66 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 95.64 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 95.62 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 95.6 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 95.57 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 95.55 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 95.55 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 95.48 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 95.48 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 95.44 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 95.41 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 95.32 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 95.31 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 95.23 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 95.14 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 95.13 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 95.05 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 95.04 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 95.02 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 94.91 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 94.87 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 94.86 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 94.84 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 94.76 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 94.66 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 94.66 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 94.62 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 94.57 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 94.49 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 94.46 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 94.34 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 94.25 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 94.12 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 93.99 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 93.87 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 93.85 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 93.84 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 93.77 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 93.68 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 93.66 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 93.56 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 93.36 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 93.34 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 93.31 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 93.27 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 93.24 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 92.93 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 92.88 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.84 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 92.65 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 92.41 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 92.18 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 91.3 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 90.78 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 90.77 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 88.92 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 88.61 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 88.58 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 88.57 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 88.56 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 88.01 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 87.51 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 86.33 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 85.95 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 85.82 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 85.75 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 85.36 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 84.65 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 84.44 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 83.96 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 83.62 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 83.28 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 83.22 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 80.59 |
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=73.00 Aligned_cols=153 Identities=11% Similarity=0.134 Sum_probs=97.3
Q ss_pred CCC-CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYT-NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~-~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
+.+ ...+||-+|=|.=.+++.|++... . ..++.|..++..+ .+.+|++.+.-.+-..++..|+.++.. .+
T Consensus 45 ~~~~~~~~vLDlG~G~G~~~~~la~~~~--~--~v~gvDi~~~~~~---~a~~n~~~~~~~~~v~~~~~D~~~~~~--~~ 115 (259)
T 3lpm_A 45 YLPIRKGKIIDLCSGNGIIPLLLSTRTK--A--KIVGVEIQERLAD---MAKRSVAYNQLEDQIEIIEYDLKKITD--LI 115 (259)
T ss_dssp CCCSSCCEEEETTCTTTHHHHHHHTTCC--C--EEEEECCSHHHHH---HHHHHHHHTTCTTTEEEECSCGGGGGG--TS
T ss_pred cCCCCCCEEEEcCCchhHHHHHHHHhcC--C--cEEEEECCHHHHH---HHHHHHHHCCCcccEEEEECcHHHhhh--hh
Confidence 445 788999999877778877887642 2 4556665555442 477777765433335667778888753 24
Q ss_pred CCCcccEEEEcCCCCCC-CCCCCccc--HHH-HHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 94 SQMKFDVIIFNFPHAGH-SPPLSEQD--TNL-IKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~-~~~~~~~~--~~~-i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
...+||.||.|.|.... ..+....+ +.. .......+..|++.+..+|+++|.+.+.+ .|...-.+..++...|
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~l~~~~ 192 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH---RPERLLDIIDIMRKYR 192 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE---CTTTHHHHHHHHHHTT
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE---cHHHHHHHHHHHHHCC
Confidence 46789999999997543 11111111 010 01123557899999999999999998863 2345566778888899
Q ss_pred CEEEEEecCC
Q 041136 170 LVLKEKVEFL 179 (214)
Q Consensus 170 l~l~~~~~F~ 179 (214)
+.+.+..+..
T Consensus 193 ~~~~~~~~v~ 202 (259)
T 3lpm_A 193 LEPKRIQFVH 202 (259)
T ss_dssp EEEEEEEEEE
T ss_pred CceEEEEEee
Confidence 9888765543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-05 Score=66.06 Aligned_cols=147 Identities=17% Similarity=0.163 Sum_probs=89.6
Q ss_pred CCCCCeEEEEecC-chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 16 YTNNQRILLVGEG-DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeG-nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+++.+||-+|=| .=.++..|++.. +..+++ .|..++..+ .+.+|++.+.. .+.+ ..-|++.+.. +.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~--vD~s~~~~~---~a~~~~~~~~~-~v~~-~~~d~~~~~~---~~ 120 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTA--TEVDEEFFE---YARRNIERNNS-NVRL-VKSNGGIIKG---VV 120 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEE--EECCHHHHH---HHHHHHHHTTC-CCEE-EECSSCSSTT---TC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEE--EECCHHHHH---HHHHHHHHhCC-CcEE-EeCCchhhhh---cc
Confidence 4578999999988 777777788876 235554 554343331 46667665543 4444 3456655543 33
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHH---HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLI---KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLV 171 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i---~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~ 171 (214)
..+||.|+.|.|...............+ ....+++..|++.+..+|++||.+.+.+..+. ...-.+.++..+.|+.
T Consensus 121 ~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g~~ 199 (230)
T 3evz_A 121 EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLGYS 199 (230)
T ss_dssp CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTTCE
T ss_pred cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcCCc
Confidence 4789999999997653211000000000 01234568999999999999999988744322 2334567788889997
Q ss_pred EEEE
Q 041136 172 LKEK 175 (214)
Q Consensus 172 l~~~ 175 (214)
+...
T Consensus 200 ~~~~ 203 (230)
T 3evz_A 200 VKDI 203 (230)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-05 Score=61.83 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=97.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++.+||-+|=|.=.++..|++.+++... .++.|..++..+ .+.+|++.+.-.....+...|+.++.. +..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~--v~~vD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~ 91 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGR--VFGFDIQDKAIA---NTTKKLTDLNLIDRVTLIKDGHQNMDK---YID 91 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCE--EEEECSCHHHHH---HHHHHHHHTTCGGGEEEECSCGGGGGG---TCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCE--EEEEECCHHHHH---HHHHHHHHcCCCCCeEEEECCHHHHhh---hcc
Confidence 456789999997766777779998864444 455675444442 466666554221235567778887754 233
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc---HhhHH---HhcC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN---VMGLA---DKLG 169 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~---i~~lA---~~~g 169 (214)
.+||.|++|+|......... ..+.+....+++.+..+|+++|.+.+....+.+..... +.... ...+
T Consensus 92 ~~fD~v~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (197)
T 3eey_A 92 CPVKAVMFNLGYLPSGDHSI-------STRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKK 164 (197)
T ss_dssp SCEEEEEEEESBCTTSCTTC-------BCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTT
T ss_pred CCceEEEEcCCcccCccccc-------ccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCc
Confidence 78999999997743211100 11233445589999999999999988876554432222 22222 2346
Q ss_pred CEEEEEecCCCCCCCCCc
Q 041136 170 LVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 170 l~l~~~~~F~~~~yPgY~ 187 (214)
+.+.....+....-|+|-
T Consensus 165 ~~v~~~~~~~~~~~pp~~ 182 (197)
T 3eey_A 165 FIVQRTDFINQANCPPIL 182 (197)
T ss_dssp EEEEEEEETTCCSCCCEE
T ss_pred EEEEEEEeccCccCCCeE
Confidence 777776666665666654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.1e-05 Score=68.89 Aligned_cols=151 Identities=16% Similarity=0.189 Sum_probs=97.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..-..+.+||-+|=|.=.++..|++.++....|+ +.|..+...+ .+.+|++.+.-.+ ..+..-|++++..
T Consensus 114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~--avD~s~~~l~---~a~~~~~~~g~~~-v~~~~~D~~~~~~---- 183 (315)
T 1ixk_A 114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIY--AFDVDENRLR---ETRLNLSRLGVLN-VILFHSSSLHIGE---- 183 (315)
T ss_dssp HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEE--EECSCHHHHH---HHHHHHHHHTCCS-EEEESSCGGGGGG----
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEE--EEcCCHHHHH---HHHHHHHHhCCCe-EEEEECChhhccc----
Confidence 3456788999998655556666888875434555 4564333331 4667777664333 3455668887653
Q ss_pred CCCcccEEEEcCCCCCCCCCCCc------ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSE------QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~------~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA~ 166 (214)
....||+|+.|.|+.|.+.-... .+...+.....+-..++..+..+|++||.+.++-|.-.|- +.-.|..+.+
T Consensus 184 ~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~ 263 (315)
T 1ixk_A 184 LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD 263 (315)
T ss_dssp GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHh
Confidence 23579999999998775321111 1112233445667899999999999999998887765553 4455666777
Q ss_pred hcCCEEEE
Q 041136 167 KLGLVLKE 174 (214)
Q Consensus 167 ~~gl~l~~ 174 (214)
+.|+.+..
T Consensus 264 ~~~~~~~~ 271 (315)
T 1ixk_A 264 NFDVELLP 271 (315)
T ss_dssp HSSEEEEC
T ss_pred cCCCEEec
Confidence 78877654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.07 E-value=2.7e-05 Score=63.43 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=87.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||-||=|.=.++..||+... ..++ ++.|..++..+ .+.+|++.+.-.++ .++..|+..+... +....
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v--~gvD~s~~~l~---~a~~~~~~~~~~~v-~~~~~d~~~~~~~--~~~~~ 111 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNP-DINY--IGIDIQKSVLS---YALDKVLEVGVPNI-KLLWVDGSDLTDY--FEDGE 111 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT-TSEE--EEEESCHHHHH---HHHHHHHHHCCSSE-EEEECCSSCGGGT--SCTTC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCC-CCCE--EEEEcCHHHHH---HHHHHHHHcCCCCE-EEEeCCHHHHHhh--cCCCC
Confidence 478899999776667777888863 3344 55564343332 46667665532233 4455688776432 44567
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
||.|+.|||..-.+ .+. ...+.....|+..+..+|++||.+++.. +..++- ..+.++.+.+|+.+....
T Consensus 112 ~D~i~~~~~~~~~~----~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~-~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 112 IDRLYLNFSDPWPK----KRH----EKRRLTYKTFLDTFKRILPENGEIHFKT-DNRGLF-EYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp CSEEEEESCCCCCS----GGG----GGGSTTSHHHHHHHHHHSCTTCEEEEEE-SCHHHH-HHHHHHHHHHTCEEEEEE
T ss_pred CCEEEEECCCCccc----cch----hhhccCCHHHHHHHHHHcCCCcEEEEEe-CCHHHH-HHHHHHHHHCCCeeeecc
Confidence 99999999954321 111 1112346788999999999999998862 222222 234556667799887754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-05 Score=60.46 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=73.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++.+||-+|=|.=.++..|++. +..| |+.|..++..+ .+.+|++.+.-.++.++. -|+..+... ..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v--~~vD~s~~~l~---~a~~~~~~~~~~~v~~~~-~~~~~l~~~---~~ 87 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL---SKKV--YAFDVQEQALG---KTSQRLSDLGIENTELIL-DGHENLDHY---VR 87 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT---SSEE--EEEESCHHHHH---HHHHHHHHHTCCCEEEEE-SCGGGGGGT---CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh---CCEE--EEEECCHHHHH---HHHHHHHHcCCCcEEEEe-CcHHHHHhh---cc
Confidence 457889999996655566667776 2344 55674444442 467777765433455555 667766543 25
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.+||.|++|+|+.-... . .+.........+++.+..+|+|||.+.++...+.|
T Consensus 88 ~~fD~v~~~~~~~~~~~----~---~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 140 (185)
T 3mti_A 88 EPIRAAIFNLGYLPSAD----K---SVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHD 140 (185)
T ss_dssp SCEEEEEEEEC------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC----
T ss_pred CCcCEEEEeCCCCCCcc----h---hcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence 68999999987654211 0 01223445567788999999999999998876654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.4e-05 Score=60.34 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=87.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++. + .++++ .|..++..+ .+.+++ .++.+ ...|+.++. +...
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~v~~--~D~~~~~~~---~a~~~~-----~~~~~-~~~d~~~~~----~~~~ 106 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ-G--HDVLG--TDLDPILID---YAKQDF-----PEARW-VVGDLSVDQ----ISET 106 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT-T--CEEEE--EESCHHHHH---HHHHHC-----TTSEE-EECCTTTSC----CCCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC-C--CcEEE--EcCCHHHHH---HHHHhC-----CCCcE-EEcccccCC----CCCC
Confidence 57889999997777777778876 2 35554 454333321 233322 13443 445776653 3456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
.||.|+.++|-.... ...-+..++..+..+|+++|.+.++......++...+..+.+++|+.+.+..
T Consensus 107 ~~D~i~~~~~~~~~~-------------~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 107 DFDLIVSAGNVMGFL-------------AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp CEEEEEECCCCGGGS-------------CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred ceeEEEECCcHHhhc-------------ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeee
Confidence 899999985533211 1233577888899999999999998777666777888899999999988753
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=73.18 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=105.2
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-.-....-.++.+||=+|=|-=..|..||...+....|+| .|..+... ..+.+|++.+.-.+ ..+..-
T Consensus 90 Qd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~A--vDis~~rl---~~~~~n~~r~g~~n-v~v~~~ 163 (456)
T 3m4x_A 90 QEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVT--NEIFPKRA---KILSENIERWGVSN-AIVTNH 163 (456)
T ss_dssp CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEE--ECSSHHHH---HHHHHHHHHHTCSS-EEEECC
T ss_pred ECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEE--EeCCHHHH---HHHHHHHHHcCCCc-eEEEeC
Confidence 4444444334444567899999986555566668888764445665 45333322 14677887764333 455667
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCccc------HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQD------TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY 156 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py 156 (214)
|+.++... ....||+|+.|-|+.|.+.-..+.+ ...+.....+...++..|..+|++||.+..+-|.-.|-
T Consensus 164 Da~~l~~~---~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e 240 (456)
T 3m4x_A 164 APAELVPH---FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPE 240 (456)
T ss_dssp CHHHHHHH---HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGG
T ss_pred CHHHhhhh---ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccc
Confidence 88876431 2467999999999988642111111 01233345667789999999999999998888876663
Q ss_pred -CcccHhhHHHhcCCEEEE
Q 041136 157 -NQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 157 -~~W~i~~lA~~~gl~l~~ 174 (214)
+.-+|..+.+++++.+..
T Consensus 241 Ene~vv~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 241 ENEEIISWLVENYPVTIEE 259 (456)
T ss_dssp GTHHHHHHHHHHSSEEEEC
T ss_pred cCHHHHHHHHHhCCCEEEe
Confidence 556677777888866654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.9e-05 Score=69.78 Aligned_cols=153 Identities=9% Similarity=0.065 Sum_probs=94.0
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..-.++.+||-+|=|.=.++..|++.++....|+| .|..+... ..+.+|++.+.-.+ ..+...|++++... +
T Consensus 255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a--~D~s~~~l---~~~~~~~~~~g~~~-v~~~~~D~~~~~~~--~ 326 (450)
T 2yxl_A 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYA--FDVDKMRM---KRLKDFVKRMGIKI-VKPLVKDARKAPEI--I 326 (450)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHH---HHHHHHHHHTTCCS-EEEECSCTTCCSSS--S
T ss_pred cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEE--EcCCHHHH---HHHHHHHHHcCCCc-EEEEEcChhhcchh--h
Confidence 34567889999986555556668888753245555 55433332 13566666553223 34556688876532 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCccc------HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc-cHhhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQD------TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW-NVMGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W-~i~~lA~ 166 (214)
....||+|+.|.|+.|.+.-....+ ...+.....+-..++..+..+|++||.+.++-|.-.|...- .|..+.+
T Consensus 327 ~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~ 406 (450)
T 2yxl_A 327 GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLN 406 (450)
T ss_dssp CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 4467999999999987632100000 01122334455788999999999999998887776654333 4555444
Q ss_pred h-cCCEEEE
Q 041136 167 K-LGLVLKE 174 (214)
Q Consensus 167 ~-~gl~l~~ 174 (214)
+ .++.+..
T Consensus 407 ~~~~~~~~~ 415 (450)
T 2yxl_A 407 VHPEFKLVP 415 (450)
T ss_dssp HCSSCEECC
T ss_pred hCCCCEEee
Confidence 4 4787754
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00014 Score=64.89 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=84.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~~~ 96 (214)
.+.+||-|| |.=.++..|++.. . +..+|++|..++..+ .+.+|++.+.-.++. ++.-|+.+ |.. ....
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~-~--~~~v~~vDi~~~~l~---~a~~~~~~~g~~~v~-~~~~D~~~~l~~---~~~~ 240 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSG-L--PKRIAVLDIDERLTK---FIEKAANEIGYEDIE-IFTFDLRKPLPD---YALH 240 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHT-C--CSEEEEECSCHHHHH---HHHHHHHHHTCCCEE-EECCCTTSCCCT---TTSS
T ss_pred CCCEEEEEC-CCCHHHHHHHHhC-C--CCEEEEEECCHHHHH---HHHHHHHHcCCCCEE-EEEChhhhhchh---hccC
Confidence 578999999 9888888887753 2 235667785444432 477787765322344 44558877 532 1235
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecC--CCCCCc-ccHhhHHH-hcCCE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRD--DHPYNQ-WNVMGLAD-KLGLV 171 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~--~~Py~~-W~i~~lA~-~~gl~ 171 (214)
.||.||.|.|... . . +..|+..|..+|++||.+ .++... +.| .. +.+..+.. +.|+.
T Consensus 241 ~fD~Vi~~~p~~~-------------~---~-~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~l~~~~g~~ 302 (373)
T 2qm3_A 241 KFDTFITDPPETL-------------E---A-IRAFVGRGIATLKGPRCAGYFGITRRESSL-DKWREIQKLLLNEFNVV 302 (373)
T ss_dssp CBSEEEECCCSSH-------------H---H-HHHHHHHHHHTBCSTTCEEEEEECTTTCCH-HHHHHHHHHHHHTSCCE
T ss_pred CccEEEECCCCch-------------H---H-HHHHHHHHHHHcccCCeEEEEEEecCcCCH-HHHHHHHHHHHHhcCcc
Confidence 7999999998532 1 1 388899999999999954 555444 332 22 45666666 78887
Q ss_pred EEEEe
Q 041136 172 LKEKV 176 (214)
Q Consensus 172 l~~~~ 176 (214)
+....
T Consensus 303 ~~~~~ 307 (373)
T 2qm3_A 303 ITDII 307 (373)
T ss_dssp EEEEE
T ss_pred hhhhh
Confidence 75543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00019 Score=57.86 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=94.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++..++.. ..|+.|..++..+ .+.+++....-.+ ..+...|+.++. +.
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~----~~ 103 (219)
T 3dh0_A 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKG--KVYAIDVQEEMVN---YAWEKVNKLGLKN-VEVLKSEENKIP----LP 103 (219)
T ss_dssp TCCTTCEEEESSCTTCTTHHHHHHHHTTTC--EEEEEESCHHHHH---HHHHHHHHHTCTT-EEEEECBTTBCS----SC
T ss_pred CCCCCCEEEEEecCCCHHHHHHHHHhCCCc--EEEEEECCHHHHH---HHHHHHHHcCCCc-EEEEecccccCC----CC
Confidence 456788999999777777777998875433 4555664444332 3555555443223 445566777654 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC----------CCCcccHhhH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH----------PYNQWNVMGL 164 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~----------Py~~W~i~~l 164 (214)
..+||.|+.+..-.... -...+++.+..+|++||.+.++-.... .++...+..+
T Consensus 104 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELS----------------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLI 167 (219)
T ss_dssp SSCEEEEEEESCGGGCS----------------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHH
T ss_pred CCCeeEEEeehhhhhcC----------------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHH
Confidence 67899999986543221 024677888899999999977643211 1456778899
Q ss_pred HHhcCCEEEEEecCCCC
Q 041136 165 ADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~ 181 (214)
.+++||...+...+...
T Consensus 168 l~~~Gf~~~~~~~~~~~ 184 (219)
T 3dh0_A 168 LEDAGIRVGRVVEVGKY 184 (219)
T ss_dssp HHHTTCEEEEEEEETTT
T ss_pred HHHCCCEEEEEEeeCCc
Confidence 99999999988776553
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.85 E-value=5.7e-05 Score=62.01 Aligned_cols=146 Identities=18% Similarity=0.313 Sum_probs=87.7
Q ss_pred ccccCCC-CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 11 KWISHYT-NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 11 ~~~~~~~-~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
.|..-|. +..+||-||=|.=.++..||+.+. ..++ ++.|..++..+ .+.+|++.....++ -+...|+.++..
T Consensus 30 ~~~~~f~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v--~giD~s~~~l~---~a~~~~~~~~~~nv-~~~~~d~~~l~~ 102 (213)
T 2fca_A 30 KWNTVFGNDNPIHIEVGTGKGQFISGMAKQNP-DINY--IGIELFKSVIV---TAVQKVKDSEAQNV-KLLNIDADTLTD 102 (213)
T ss_dssp CHHHHHTSCCCEEEEECCTTSHHHHHHHHHCT-TSEE--EEECSCHHHHH---HHHHHHHHSCCSSE-EEECCCGGGHHH
T ss_pred CHHHHcCCCCceEEEEecCCCHHHHHHHHHCC-CCCE--EEEEechHHHH---HHHHHHHHcCCCCE-EEEeCCHHHHHh
Confidence 4433344 577899999776666777888763 3444 45664444432 36666655432233 445568887642
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
. +....||.|+.|||-.-.+. +. ...+.+...|++.+..+|++||.+++.. +..+|-.|-+ +....+|
T Consensus 103 ~--~~~~~~d~v~~~~~~p~~~~----~~----~~~rl~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~-~~~~~~g 170 (213)
T 2fca_A 103 V--FEPGEVKRVYLNFSDPWPKK----RH----EKRRLTYSHFLKKYEEVMGKGGSIHFKT-DNRGLFEYSL-KSFSEYG 170 (213)
T ss_dssp H--CCTTSCCEEEEESCCCCCSG----GG----GGGSTTSHHHHHHHHHHHTTSCEEEEEE-SCHHHHHHHH-HHHHHHT
T ss_pred h--cCcCCcCEEEEECCCCCcCc----cc----cccccCcHHHHHHHHHHcCCCCEEEEEe-CCHHHHHHHH-HHHHHCC
Confidence 1 44567999999998543211 00 0112235788999999999999998873 2222334433 4445568
Q ss_pred CEEEEE
Q 041136 170 LVLKEK 175 (214)
Q Consensus 170 l~l~~~ 175 (214)
+.+...
T Consensus 171 ~~~~~~ 176 (213)
T 2fca_A 171 LLLTYV 176 (213)
T ss_dssp CEEEEE
T ss_pred Cccccc
Confidence 877653
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7.3e-05 Score=64.07 Aligned_cols=127 Identities=7% Similarity=-0.018 Sum_probs=85.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++.+||-+|=|.=.||..+|+... . .+++.|..++..+ .+.+|++...-.+...+..-|+.++.. .
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~---~-~V~~vD~s~~~~~---~a~~n~~~n~~~~~v~~~~~D~~~~~~-----~ 190 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGK---A-KVIAIEKDPYTFK---FLVENIHLNKVEDRMSAYNMDNRDFPG-----E 190 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTC---C-EEEEECCCHHHHH---HHHHHHHHTTCTTTEEEECSCTTTCCC-----C
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCC---C-EEEEEECCHHHHH---HHHHHHHHcCCCceEEEEECCHHHhcc-----c
Confidence 35588999998555556666777642 2 5666775554442 477777765433335577788887653 5
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC--CC--CCcccHhhHHHhcCCE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD--HP--YNQWNVMGLADKLGLV 171 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~--~P--y~~W~i~~lA~~~gl~ 171 (214)
.+||.|+.|+|... ..|+..+..+|++||.+++..+.. .. ...-.+...+.+.|+.
T Consensus 191 ~~fD~Vi~~~p~~~--------------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 191 NIADRILMGYVVRT--------------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYD 250 (278)
T ss_dssp SCEEEEEECCCSSG--------------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCE
T ss_pred CCccEEEECCchhH--------------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCe
Confidence 78999999999321 345567888999999998876642 11 1233466788899998
Q ss_pred EEE
Q 041136 172 LKE 174 (214)
Q Consensus 172 l~~ 174 (214)
+..
T Consensus 251 ~~~ 253 (278)
T 2frn_A 251 VEK 253 (278)
T ss_dssp EEE
T ss_pred eEE
Confidence 765
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00031 Score=57.93 Aligned_cols=141 Identities=11% Similarity=0.032 Sum_probs=93.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++..+ . ..|+.|..++..+ .+.+++....-.+...+...|+.++. +.
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~--~v~~vD~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~ 111 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK--G--QITGIDLFPDFIE---IFNENAVKANCADRVKGITGSMDNLP----FQ 111 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC--S--EEEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTSCS----SC
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC--C--eEEEEECCHHHHH---HHHHHHHHcCCCCceEEEECChhhCC----CC
Confidence 567788999999877777888998874 2 4455564443331 35555554432232556677887664 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---CCCC---------------C
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---DDHP---------------Y 156 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~~~P---------------y 156 (214)
..+||.|+.+..-.-.. ...+++.+..+|+|||.+.|+-. ...+ .
T Consensus 112 ~~~fD~v~~~~~l~~~~-----------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (257)
T 3f4k_A 112 NEELDLIWSEGAIYNIG-----------------FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEIS 174 (257)
T ss_dssp TTCEEEEEEESCSCCCC-----------------HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCC
T ss_pred CCCEEEEEecChHhhcC-----------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCC
Confidence 67899999985432210 23577889999999999977642 1111 1
Q ss_pred CcccHhhHHHhcCCEEEEEecCCCCCC
Q 041136 157 NQWNVMGLADKLGLVLKEKVEFLKQDF 183 (214)
Q Consensus 157 ~~W~i~~lA~~~gl~l~~~~~F~~~~y 183 (214)
+.-.+..+.+++||...+...+....|
T Consensus 175 ~~~~~~~~l~~aGf~~v~~~~~~~~~w 201 (257)
T 3f4k_A 175 VIPTCIDKMERAGYTPTAHFILPENCW 201 (257)
T ss_dssp BHHHHHHHHHHTTEEEEEEEECCGGGT
T ss_pred CHHHHHHHHHHCCCeEEEEEECChhhH
Confidence 222466788899999999888887777
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=4.4e-05 Score=71.12 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=102.7
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-.-....-.++.+||=+|=|-=..|..||...+....|+| .|..+...+ .+.+|++.+.-. ..+..-
T Consensus 86 Qd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~A--vDis~~~l~---~a~~n~~r~G~~--v~~~~~ 158 (464)
T 3m6w_A 86 QEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLA--NEVDGKRVR---GLLENVERWGAP--LAVTQA 158 (464)
T ss_dssp CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEE--ECSCHHHHH---HHHHHHHHHCCC--CEEECS
T ss_pred ECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEE--EECCHHHHH---HHHHHHHHcCCe--EEEEEC
Confidence 4444444334445567899999986655566668888764445554 564443331 467787776433 344556
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY 156 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py 156 (214)
|++++.. ....+||+|+.|-|..|.+.-..+. ....+.....+-..++..|..+|++||.+..+-|.-.|-
T Consensus 159 Da~~l~~---~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e 235 (464)
T 3m6w_A 159 PPRALAE---AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE 235 (464)
T ss_dssp CHHHHHH---HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG
T ss_pred CHHHhhh---hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh
Confidence 8887653 1246799999999998753211110 112234455677889999999999999998887876553
Q ss_pred -CcccHhhHHHhc-CCEEEE
Q 041136 157 -NQWNVMGLADKL-GLVLKE 174 (214)
Q Consensus 157 -~~W~i~~lA~~~-gl~l~~ 174 (214)
+.-.|..+.++. ++.+..
T Consensus 236 Ene~vv~~~l~~~~~~~l~~ 255 (464)
T 3m6w_A 236 ENEGVVAHFLKAHPEFRLED 255 (464)
T ss_dssp GTHHHHHHHHHHCTTEEEEC
T ss_pred cCHHHHHHHHHHCCCcEEEe
Confidence 455666666655 676654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00034 Score=59.56 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=94.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+.+++++||-+|=|.=.|+..||+..|+...|+| .|..++..+ .+.+ ..++.+..+..-.|++.....+..
T Consensus 73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~a--vD~s~~~~~---~l~~---~a~~~~ni~~V~~d~~~p~~~~~~ 144 (233)
T 4df3_A 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYG--VEFAPRVMR---DLLT---VVRDRRNIFPILGDARFPEKYRHL 144 (233)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEE--EECCHHHHH---HHHH---HSTTCTTEEEEESCTTCGGGGTTT
T ss_pred cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEE--EeCCHHHHH---HHHH---hhHhhcCeeEEEEeccCccccccc
Confidence 46789999999998877777779999987667776 454344332 2222 223344444455678777665333
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC------C-CCcccHhhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------P-YNQWNVMGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------P-y~~W~i~~lA~ 166 (214)
...+|.|+-++||... ...++.++..+|+|||.+.|.++... | -...+.++..+
T Consensus 145 -~~~vDvVf~d~~~~~~------------------~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~ 205 (233)
T 4df3_A 145 -VEGVDGLYADVAQPEQ------------------AAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLM 205 (233)
T ss_dssp -CCCEEEEEECCCCTTH------------------HHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHH
T ss_pred -cceEEEEEEeccCChh------------------HHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHH
Confidence 4579999999998752 13478889999999999999876432 1 11233455566
Q ss_pred hcCCEEEEEecCCC
Q 041136 167 KLGLVLKEKVEFLK 180 (214)
Q Consensus 167 ~~gl~l~~~~~F~~ 180 (214)
.+||.+.+...+++
T Consensus 206 ~~GF~l~e~i~L~p 219 (233)
T 4df3_A 206 DGGLEIKDVVHLDP 219 (233)
T ss_dssp HTTCCEEEEEECTT
T ss_pred HCCCEEEEEEccCC
Confidence 78999998876554
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=97.77 E-value=2.2e-05 Score=65.65 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=81.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-------CCCEEEEcccccc-CCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-------RGCLVLHGVNVHT-MDR 89 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-------~g~~Vl~~VDAt~-L~~ 89 (214)
...+||-||=|.=.|+..||+... ..-.++.|..+.+.+ .+.+|++.++. ..-..+...|+.+ |..
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~---~~~v~gvD~s~~~l~---~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~ 122 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFP---EDLILGMEIRVQVTN---YVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPN 122 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHST---TSEEEEEESCHHHHH---HHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---CCCEEEEEcCHHHHH---HHHHHHHHHhhccccccCCCcEEEEeccHHHHHHH
Confidence 467899999666666666888763 234556675444442 47777777632 1224455668876 443
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
.+....+|.|+.+||-.-.+.... ..+.+...|+..+..+|++||.+.+.. +...|..|-...+. ..+
T Consensus 123 --~~~~~~~d~v~~~~p~p~~k~~~~--------~~r~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~~~~~-~~~ 190 (246)
T 2vdv_E 123 --FFEKGQLSKMFFCFPDPHFKQRKH--------KARIITNTLLSEYAYVLKEGGVVYTIT-DVKDLHEWMVKHLE-EHP 190 (246)
T ss_dssp --TSCTTCEEEEEEESCCCC--------------CSSCCCHHHHHHHHHHEEEEEEEEEEE-SCHHHHHHHHHHHH-HST
T ss_pred --hccccccCEEEEECCCcccccchh--------HHhhccHHHHHHHHHHcCCCCEEEEEe-ccHHHHHHHHHHHH-hCc
Confidence 255678999999998765432110 112123678888999999999998753 22334556554444 444
Q ss_pred C
Q 041136 170 L 170 (214)
Q Consensus 170 l 170 (214)
.
T Consensus 191 ~ 191 (246)
T 2vdv_E 191 L 191 (246)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00045 Score=58.23 Aligned_cols=135 Identities=16% Similarity=0.073 Sum_probs=83.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++.++ .. +|+.|..++..+ .+.+++..........+...|+.++.
T Consensus 61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~--v~gvd~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~------ 127 (287)
T 1kpg_A 61 GLQPGMTLLDVGCGWGATMMRAVEKYD--VN--VVGLTLSKNQAN---HVQQLVANSENLRSKRVLLAGWEQFD------ 127 (287)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHC--CE--EEEEESCHHHHH---HHHHHHHTCCCCSCEEEEESCGGGCC------
T ss_pred CCCCcCEEEEECCcccHHHHHHHHHcC--CE--EEEEECCHHHHH---HHHHHHHhcCCCCCeEEEECChhhCC------
Confidence 356788999999887778888998775 24 455554333321 24444332211112334455776542
Q ss_pred CCcccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC----------CCC-------
Q 041136 95 QMKFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD----------DHP------- 155 (214)
Q Consensus 95 ~~~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~----------~~P------- 155 (214)
.+||.|+.+. -|++.. -...+|+.+..+|+|||.+.|+-.. +.|
T Consensus 128 -~~fD~v~~~~~l~~~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFGHE----------------RYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFAR 190 (287)
T ss_dssp -CCCSEEEEESCGGGTCTT----------------THHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHH
T ss_pred -CCeeEEEEeCchhhcChH----------------HHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccc
Confidence 6799999884 355421 2356778889999999998776422 111
Q ss_pred ---------------CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 ---------------YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 ---------------y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
++.-.+..+++++||.+.+...+.
T Consensus 191 ~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 191 FLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred hhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 123356677888999998876543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0012 Score=56.22 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=88.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++.++ .+++ +.|..++..+ .+.+++....-.+..-+...|+.++
T Consensus 69 ~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~--gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~------- 134 (302)
T 3hem_A 69 NLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVI--GLTLSENQYA---HDKAMFDEVDSPRRKEVRIQGWEEF------- 134 (302)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEE--EEECCHHHHH---HHHHHHHHSCCSSCEEEEECCGGGC-------
T ss_pred CCCCcCEEEEeeccCcHHHHHHHHhCC--CEEE--EEECCHHHHH---HHHHHHHhcCCCCceEEEECCHHHc-------
Confidence 346788999999777777888999885 3554 5553333321 3555554432222344555677765
Q ss_pred CCcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC------------------
Q 041136 95 QMKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------------------ 154 (214)
Q Consensus 95 ~~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------------------ 154 (214)
..+||.|+.+.. |+.... +. ...+-+..+|+.+..+|+|||.+.|.-....
T Consensus 135 ~~~fD~v~~~~~~~~~~d~~---~~------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 205 (302)
T 3hem_A 135 DEPVDRIVSLGAFEHFADGA---GD------AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLR 205 (302)
T ss_dssp CCCCSEEEEESCGGGTTCCS---SC------CCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHH
T ss_pred CCCccEEEEcchHHhcCccc---cc------cchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccc
Confidence 467999999854 442110 00 0112456788999999999999876543211
Q ss_pred ----------C----CCcccHhhHHHhcCCEEEEEecCCC
Q 041136 155 ----------P----YNQWNVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 155 ----------P----y~~W~i~~lA~~~gl~l~~~~~F~~ 180 (214)
| .+.-.+..+++++||.+.+...+..
T Consensus 206 ~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 206 FIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp HHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred hHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 1 1122467788899999988766543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=97.74 E-value=6.9e-05 Score=64.02 Aligned_cols=156 Identities=13% Similarity=0.120 Sum_probs=88.6
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+..-.++.+||=+|=|.=.++..|++.......|+| .|..+...+ .+.+|++.+.-.++ .+...|++++.....
T Consensus 78 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a--vD~~~~~l~---~~~~~~~~~g~~~v-~~~~~D~~~~~~~~~ 151 (274)
T 3ajd_A 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVA--VEISKTRTK---ALKSNINRMGVLNT-IIINADMRKYKDYLL 151 (274)
T ss_dssp HHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEE--EESCHHHHH---HHHHHHHHTTCCSE-EEEESCHHHHHHHHH
T ss_pred HhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEE--ECCCHHHHH---HHHHHHHHhCCCcE-EEEeCChHhcchhhh
Confidence 334567889999985544555558887643345555 453333221 35666665532233 344558876542100
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCc--ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHH-Hhc
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSE--QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLA-DKL 168 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~--~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA-~~~ 168 (214)
.....||+|+.|.|..|.+.-... .....+.....+...++..|..+|++||.+.++.|.-.|. +...|..+. +..
T Consensus 152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~ 231 (274)
T 3ajd_A 152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRN 231 (274)
T ss_dssp HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCS
T ss_pred hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCC
Confidence 014579999999999875320000 0001111122456788999999999999998888876653 444555543 445
Q ss_pred CCEEEE
Q 041136 169 GLVLKE 174 (214)
Q Consensus 169 gl~l~~ 174 (214)
++.+..
T Consensus 232 ~~~~~~ 237 (274)
T 3ajd_A 232 DVELII 237 (274)
T ss_dssp SEEEEC
T ss_pred CcEEec
Confidence 666653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0001 Score=59.32 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=88.9
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
....+..+||-||=|.=.++..|++. + .. .++.|..++..+ .+..++ ++.+ ...|+.++.
T Consensus 39 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~--v~~vD~s~~~~~---~a~~~~------~~~~-~~~d~~~~~----- 98 (211)
T 3e23_A 39 GELPAGAKILELGCGAGYQAEAMLAA-G--FD--VDATDGSPELAA---EASRRL------GRPV-RTMLFHQLD----- 98 (211)
T ss_dssp TTSCTTCEEEESSCTTSHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHH------TSCC-EECCGGGCC-----
T ss_pred HhcCCCCcEEEECCCCCHHHHHHHHc-C--Ce--EEEECCCHHHHH---HHHHhc------CCce-EEeeeccCC-----
Confidence 34567889999997776677778876 2 34 455664343331 233333 3433 345666654
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC------------CCcccH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP------------YNQWNV 161 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P------------y~~W~i 161 (214)
...+||.|+.+..-.-. ..+-+..+++.+..+|++||.+.++...+.+ ++.-.+
T Consensus 99 ~~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
T 3e23_A 99 AIDAYDAVWAHACLLHV--------------PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWL 164 (211)
T ss_dssp CCSCEEEEEECSCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHH
T ss_pred CCCcEEEEEecCchhhc--------------CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHH
Confidence 35789999998633221 1234567888899999999999888665432 344567
Q ss_pred hhHHHhcC-CEEEEEecCCCCCCCC
Q 041136 162 MGLADKLG-LVLKEKVEFLKQDFPG 185 (214)
Q Consensus 162 ~~lA~~~g-l~l~~~~~F~~~~yPg 185 (214)
..+.+++| |.+.+........|++
T Consensus 165 ~~~l~~aG~f~~~~~~~~~~~~~~~ 189 (211)
T 3e23_A 165 RARYAEAGTWASVAVESSEGKGFDQ 189 (211)
T ss_dssp HHHHHHHCCCSEEEEEEEEEECTTS
T ss_pred HHHHHhCCCcEEEEEEeccCCCCCC
Confidence 88999999 9988876555444443
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=6.2e-05 Score=65.60 Aligned_cols=144 Identities=16% Similarity=0.174 Sum_probs=87.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH----hCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW----SRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~----~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+..+||.||=|+=.++..|++..+ ...+++.-+| +++.+ .+.+++..+. ...+.+ +.-|+.++...
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid--~~~i~---~a~~~~~~~~~~~~~~~v~~-~~~D~~~~~~~-- 164 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDID--GEVME---QSKQHFPQISRSLADPRATV-RVGDGLAFVRQ-- 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESC--HHHHH---HHHHHCHHHHGGGGCTTEEE-EESCHHHHHHS--
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECC--HHHHH---HHHHHhHHhhcccCCCcEEE-EECcHHHHHHh--
Confidence 5678999999888888888987642 3355555444 33331 3445554432 223444 44477654211
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH-HHHHHHHHhccCCCCEEEEEecCCCC----CCcccHhhHHHh
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL-EAFLKNGREMLGEGGEVHVTLRDDHP----YNQWNVMGLADK 167 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL-~~Ff~Sa~~lL~~~G~i~VTl~~~~P----y~~W~i~~lA~~ 167 (214)
....+||.||.|.|..... ...|. ..|++.+..+|++||.+.+..- .| ...+.+.+..++
T Consensus 165 ~~~~~fDvIi~d~~~~~~~-------------~~~l~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~~~~~l~~ 229 (304)
T 3bwc_A 165 TPDNTYDVVIIDTTDPAGP-------------ASKLFGEAFYKDVLRILKPDGICCNQGE--SIWLDLELIEKMSRFIRE 229 (304)
T ss_dssp SCTTCEEEEEEECC----------------------CCHHHHHHHHHHEEEEEEEEEEEC--CTTTCHHHHHHHHHHHHH
T ss_pred ccCCceeEEEECCCCcccc-------------chhhhHHHHHHHHHHhcCCCcEEEEecC--CcccchHHHHHHHHHHHh
Confidence 1246799999998874321 12232 7899999999999999877632 33 235667778888
Q ss_pred cCCEEEEEecCCCCCCC
Q 041136 168 LGLVLKEKVEFLKQDFP 184 (214)
Q Consensus 168 ~gl~l~~~~~F~~~~yP 184 (214)
.||...+.....-..||
T Consensus 230 ~GF~~v~~~~~~vP~yp 246 (304)
T 3bwc_A 230 TGFASVQYALMHVPTYP 246 (304)
T ss_dssp HTCSEEEEEECCCTTST
T ss_pred CCCCcEEEEEeeccccc
Confidence 89977666554444454
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00024 Score=59.45 Aligned_cols=145 Identities=16% Similarity=0.111 Sum_probs=94.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||=|.=.++..|++. + ...+ |+.|..+...+ .+.++++...-.+-.-+...|+.++. +.
T Consensus 43 ~~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v--~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~ 111 (267)
T 3kkz_A 43 NLTEKSLIADIGCGTGGQTMVLAGH-V-TGQV--TGLDFLSGFID---IFNRNARQSGLQNRVTGIVGSMDDLP----FR 111 (267)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHTT-C-SSEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTSCC----CC
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHhc-c-CCEE--EEEeCCHHHHH---HHHHHHHHcCCCcCcEEEEcChhhCC----CC
Confidence 3677899999997777777778876 2 3344 45564333331 35555544432233555667887654 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---CCCC----CCcc--------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---DDHP----YNQW-------- 159 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~~~P----y~~W-------- 159 (214)
..+||.|+.+.+-.-. + ...+++.+..+|+|||.+.++-. ...+ ...|
T Consensus 112 ~~~fD~i~~~~~~~~~--------------~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (267)
T 3kkz_A 112 NEELDLIWSEGAIYNI--------------G---FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEID 174 (267)
T ss_dssp TTCEEEEEESSCGGGT--------------C---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCE
T ss_pred CCCEEEEEEcCCceec--------------C---HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCC
Confidence 6789999998764221 0 24578889999999999876632 1111 1234
Q ss_pred ---cHhhHHHhcCCEEEEEecCCCCCC-CCCc
Q 041136 160 ---NVMGLADKLGLVLKEKVEFLKQDF-PGYH 187 (214)
Q Consensus 160 ---~i~~lA~~~gl~l~~~~~F~~~~y-PgY~ 187 (214)
.+..+.+++||.+.+...+....| ..|.
T Consensus 175 ~~~~~~~~l~~aGf~~v~~~~~~~~~w~~~~~ 206 (267)
T 3kkz_A 175 TIPNQVAKIHKAGYLPVATFILPENCWTDHYF 206 (267)
T ss_dssp EHHHHHHHHHHTTEEEEEEEECCGGGTTTTTH
T ss_pred CHHHHHHHHHHCCCEEEEEEECCHhHHHHHHH
Confidence 577788999999999888877666 5554
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.9e-05 Score=62.55 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=84.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC---CEEEEccccccCCCC-
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG---CLVLHGVNVHTMDRH- 90 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g---~~Vl~~VDAt~L~~~- 90 (214)
+.....+||-+|-|.=.+++.|++... ....|+.|..++..+ .+.+|++.+...| -..++..|+.++...
T Consensus 33 ~~~~~~~VLDlG~G~G~~~l~la~~~~---~~~v~gvDi~~~~~~---~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~ 106 (260)
T 2ozv_A 33 ADDRACRIADLGAGAGAAGMAVAARLE---KAEVTLYERSQEMAE---FARRSLELPDNAAFSARIEVLEADVTLRAKAR 106 (260)
T ss_dssp CCCSCEEEEECCSSSSHHHHHHHHHCT---TEEEEEEESSHHHHH---HHHHHTTSGGGTTTGGGEEEEECCTTCCHHHH
T ss_pred cccCCCEEEEeCChHhHHHHHHHHhCC---CCeEEEEECCHHHHH---HHHHHHHhhhhCCCcceEEEEeCCHHHHhhhh
Confidence 345678999999888788888988763 345566675555442 4667776522122 134455688765210
Q ss_pred --CCCCCCcccEEEEcCCCCCCCCCCCcccHH-HHHH--hHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 91 --PTLSQMKFDVIIFNFPHAGHSPPLSEQDTN-LIKR--HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 91 --~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~-~i~~--n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
..+...+||.|+.|.|..... +....+.. .+.. ....+..|++.+..+|+++|.+.+.+.. ...-.+..++
T Consensus 107 ~~~~~~~~~fD~Vv~nPPy~~~~-~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l 182 (260)
T 2ozv_A 107 VEAGLPDEHFHHVIMNPPYNDAG-DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP---QSVAEIIAAC 182 (260)
T ss_dssp HHTTCCTTCEEEEEECCCC----------------------CCHHHHHHHHHHHEEEEEEEEEEECG---GGHHHHHHHH
T ss_pred hhhccCCCCcCEEEECCCCcCCC-CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH---HHHHHHHHHH
Confidence 123457899999999987542 11111100 0000 1122788999999999999999876432 1222344444
Q ss_pred HhcCCEEEEEe
Q 041136 166 DKLGLVLKEKV 176 (214)
Q Consensus 166 ~~~gl~l~~~~ 176 (214)
.+. +...+..
T Consensus 183 ~~~-~~~~~i~ 192 (260)
T 2ozv_A 183 GSR-FGGLEIT 192 (260)
T ss_dssp TTT-EEEEEEE
T ss_pred Hhc-CCceEEE
Confidence 443 5544433
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00033 Score=59.37 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=88.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|-|.=.++.+|++.++ ..++ |+.|..++..+ .+.+|++.+.-.++ .+...|+.+. +...
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~-~~~v--~~vD~s~~~l~---~a~~n~~~~~~~~v-~~~~~d~~~~-----~~~~ 175 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERP-DCEI--IAVDRMPDAVS---LAQRNAQHLAIKNI-HILQSDWFSA-----LAGQ 175 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT-TSEE--EEECSSHHHHH---HHHHHHHHHTCCSE-EEECCSTTGG-----GTTC
T ss_pred cCCCEEEEecCCccHHHHHHHHhCC-CCEE--EEEECCHHHHH---HHHHHHHHcCCCce-EEEEcchhhh-----cccC
Confidence 4677999999777777777888774 3344 45564444332 46777776642233 3444566542 2246
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHH-----------HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLI-----------KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLA 165 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i-----------~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA 165 (214)
+||.|+.|+|..+... ..-..+.+ ......+..++..+..+|++||.+.+.... .+...+..+.
T Consensus 176 ~fD~Iv~npPy~~~~~--~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~l 250 (276)
T 2b3t_A 176 QFAMIVSNPPYIDEQD--PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---QQGEAVRQAF 250 (276)
T ss_dssp CEEEEEECCCCBCTTC--HHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---SCHHHHHHHH
T ss_pred CccEEEECCCCCCccc--cccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---hHHHHHHHHH
Confidence 7999999999886521 00000000 001246788999999999999999887322 3455677888
Q ss_pred HhcCCEEEE
Q 041136 166 DKLGLVLKE 174 (214)
Q Consensus 166 ~~~gl~l~~ 174 (214)
+++|+...+
T Consensus 251 ~~~Gf~~v~ 259 (276)
T 2b3t_A 251 ILAGYHDVE 259 (276)
T ss_dssp HHTTCTTCC
T ss_pred HHCCCcEEE
Confidence 888886433
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00049 Score=56.62 Aligned_cols=137 Identities=12% Similarity=0.140 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+...+.+||-+|=|.=.++..|++..+ ...+++ .|..++..+ .+.+|.+.. .+ ..+..-|+.+...+..+.
T Consensus 71 ~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~g--vD~s~~~~~---~a~~~~~~~--~~-v~~~~~d~~~~~~~~~~~ 141 (230)
T 1fbn_A 71 PIKRDSKILYLGASAGTTPSHVADIAD-KGIVYA--IEYAPRIMR---ELLDACAER--EN-IIPILGDANKPQEYANIV 141 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEE--EESCHHHHH---HHHHHTTTC--TT-EEEEECCTTCGGGGTTTS
T ss_pred CCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEE--EECCHHHHH---HHHHHhhcC--CC-eEEEECCCCCcccccccC
Confidence 456788999999777667777998875 335554 554333321 244443322 23 334455777632211233
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-CCCCC-------cccHhhHHH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-DHPYN-------QWNVMGLAD 166 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-~~Py~-------~W~i~~lA~ 166 (214)
..||.|+.++|..+ ....+++.+..+|+|+|.+.|++.. ..+.. ...+. +..
T Consensus 142 -~~~D~v~~~~~~~~------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~ 201 (230)
T 1fbn_A 142 -EKVDVIYEDVAQPN------------------QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILE 201 (230)
T ss_dssp -CCEEEEEECCCSTT------------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHH
T ss_pred -ccEEEEEEecCChh------------------HHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHH
Confidence 67999995554322 2456778889999999999887542 11111 13344 667
Q ss_pred hcCCEEEEEecCCC
Q 041136 167 KLGLVLKEKVEFLK 180 (214)
Q Consensus 167 ~~gl~l~~~~~F~~ 180 (214)
.+||.+.+..++++
T Consensus 202 ~~Gf~~~~~~~~~~ 215 (230)
T 1fbn_A 202 AGGFKIVDEVDIEP 215 (230)
T ss_dssp HHTEEEEEEEECTT
T ss_pred HCCCEEEEEEccCC
Confidence 78999888776543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00027 Score=58.28 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=84.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
....+.+||-+|=|.=+++..|++.+++..++++ +|..++..+ .+.+|++.. . .....+...|+.++. +
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~--~D~~~~~~~---~a~~~~~~~~g-~~~v~~~~~d~~~~~----~ 162 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVES--YEARPHHLA---QAERNVRAFWQ-VENVRFHLGKLEEAE----L 162 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEE--EESCHHHHH---HHHHHHHHHCC-CCCEEEEESCGGGCC----C
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEE--EeCCHHHHH---HHHHHHHHhcC-CCCEEEEECchhhcC----C
Confidence 4567889999998887888889998765455555 454333331 356666554 3 223344556777652 3
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
....||.|+.|.|.. ..++..+..+|+++|.+.+..... -....+.....+.|+...
T Consensus 163 ~~~~~D~v~~~~~~~---------------------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~gf~~~ 219 (258)
T 2pwy_A 163 EEAAYDGVALDLMEP---------------------WKVLEKAALALKPDRFLVAYLPNI--TQVLELVRAAEAHPFRLE 219 (258)
T ss_dssp CTTCEEEEEEESSCG---------------------GGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHTTTTEEEE
T ss_pred CCCCcCEEEECCcCH---------------------HHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceE
Confidence 446799999987642 145667888999999998874221 134455566667888766
Q ss_pred EEec
Q 041136 174 EKVE 177 (214)
Q Consensus 174 ~~~~ 177 (214)
+...
T Consensus 220 ~~~~ 223 (258)
T 2pwy_A 220 RVLE 223 (258)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0002 Score=65.19 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=92.3
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
..-.++.+||-+|=|.=.++..|++..+. ..|+|.-.+... +. .+.+|++.+.. .+. +...|++++... +
T Consensus 242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~-l~----~~~~~~~~~g~-~~~-~~~~D~~~~~~~--~ 311 (429)
T 1sqg_A 242 LAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQR-LS----RVYDNLKRLGM-KAT-VKQGDGRYPSQW--C 311 (429)
T ss_dssp HCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTT-HH----HHHHHHHHTTC-CCE-EEECCTTCTHHH--H
T ss_pred cCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHH-HH----HHHHHHHHcCC-CeE-EEeCchhhchhh--c
Confidence 34467889999986555556668887642 456665544321 21 35566655432 343 445688776421 3
Q ss_pred CCCcccEEEEcCCCCCCCCCCCccc------HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc-cHhh-HH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQD------TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW-NVMG-LA 165 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W-~i~~-lA 165 (214)
....||+|+.|.|+.|.+.-....+ ...+.....+-..++..+..+|++||.+.++-|.-.|.... .|.. +.
T Consensus 312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~ 391 (429)
T 1sqg_A 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQ 391 (429)
T ss_dssp TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHH
Confidence 4468999999999987532111110 11233445667899999999999999998887776554333 3444 34
Q ss_pred HhcCCEEEE
Q 041136 166 DKLGLVLKE 174 (214)
Q Consensus 166 ~~~gl~l~~ 174 (214)
+..++.+..
T Consensus 392 ~~~~~~~~~ 400 (429)
T 1sqg_A 392 RTADAELCE 400 (429)
T ss_dssp HCTTCEECS
T ss_pred hCCCCEEeC
Confidence 445777653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00058 Score=55.66 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=81.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||-+|=|.=.++..|++.++....++ +.|..++..+ .+.+|++.+ .++.+ ...|+.+......+ .
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~--~vD~s~~~~~---~~~~~~~~~--~~v~~-~~~d~~~~~~~~~~-~ 141 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIF--GIEFSPRVLR---ELVPIVEER--RNIVP-ILGDATKPEEYRAL-V 141 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEE--EEESCHHHHH---HHHHHHSSC--TTEEE-EECCTTCGGGGTTT-C
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEE--EEECCHHHHH---HHHHHHhcc--CCCEE-EEccCCCcchhhcc-c
Confidence 56788999999777777788999886444554 4564443331 244444333 24444 45577764321112 2
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-----CCC---cccHhhHHHh
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-----PYN---QWNVMGLADK 167 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-----Py~---~W~i~~lA~~ 167 (214)
.+||.|+.+.|+.. ....++..+..+|++||.+.++..... |.. ...+..+ ..
T Consensus 142 ~~~D~v~~~~~~~~------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~ 202 (227)
T 1g8a_A 142 PKVDVIFEDVAQPT------------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SE 202 (227)
T ss_dssp CCEEEEEECCCSTT------------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HT
T ss_pred CCceEEEECCCCHh------------------HHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hh
Confidence 47999999988211 123456778999999999988754321 111 2345555 55
Q ss_pred cCCEEEEEecC
Q 041136 168 LGLVLKEKVEF 178 (214)
Q Consensus 168 ~gl~l~~~~~F 178 (214)
+ |.+.+....
T Consensus 203 ~-f~~~~~~~~ 212 (227)
T 1g8a_A 203 Y-FEVIERLNL 212 (227)
T ss_dssp T-SEEEEEEEC
T ss_pred h-ceeeeEecc
Confidence 5 888776554
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00084 Score=53.39 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=84.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+ +||-||=|.=.++..|++. + . -.++.|..++..+ .+.+++.... .+ ..+...|+.++. +..
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~-~--~--~v~~vD~s~~~~~---~a~~~~~~~~-~~-~~~~~~d~~~~~----~~~ 92 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASL-G--Y--EVTAVDQSSVGLA---KAKQLAQEKG-VK-ITTVQSNLADFD----IVA 92 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTT-T--C--EEEEECSSHHHHH---HHHHHHHHHT-CC-EEEECCBTTTBS----CCT
T ss_pred CCCC-CEEEECCCCCHhHHHHHhC-C--C--eEEEEECCHHHHH---HHHHHHHhcC-Cc-eEEEEcChhhcC----CCc
Confidence 4556 9999997776667777764 2 3 4555665444432 3444444332 12 334455777653 445
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC--------CCC------CCcccH
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD--------DHP------YNQWNV 161 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~--------~~P------y~~W~i 161 (214)
..||.|+.++.|.. ......+++.+..+|++||.+.++... +.| ++.-.+
T Consensus 93 ~~fD~v~~~~~~~~----------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 156 (202)
T 2kw5_A 93 DAWEGIVSIFCHLP----------------SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETL 156 (202)
T ss_dssp TTCSEEEEECCCCC----------------HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHH
T ss_pred CCccEEEEEhhcCC----------------HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHH
Confidence 78999999988762 123567788899999999999777532 222 222334
Q ss_pred hhHHHhcCCEEEEEecCCCCCCCC
Q 041136 162 MGLADKLGLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 162 ~~lA~~~gl~l~~~~~F~~~~yPg 185 (214)
..+.+ ||.+............|
T Consensus 157 ~~~l~--Gf~v~~~~~~~~~~~~g 178 (202)
T 2kw5_A 157 QSELP--SLNWLIANNLERNLDEG 178 (202)
T ss_dssp HHHCS--SSCEEEEEEEEEECSCS
T ss_pred HHHhc--CceEEEEEEEEeecCCC
Confidence 44554 99888766655444333
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00027 Score=59.86 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=82.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-+|-|.=.++.+|++.+++..++ +++|..++..+ .+.+|++.+.-.....+..-|+.+. +.
T Consensus 109 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v--~~vD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 178 (277)
T 1o54_A 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKV--FAYEKREEFAK---LAESNLTKWGLIERVTIKVRDISEG-----FD 178 (277)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEE--EEECCCHHHHH---HHHHHHHHTTCGGGEEEECCCGGGC-----CS
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCcEE--EEEECCHHHHH---HHHHHHHHcCCCCCEEEEECCHHHc-----cc
Confidence 34567899999988777788899887544444 45664443331 4666665542111234455577654 33
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
...||.|+.|.|.. ..++..+..+|+++|.+.+..... .....+.+..++.|+...+
T Consensus 179 ~~~~D~V~~~~~~~---------------------~~~l~~~~~~L~pgG~l~~~~~~~--~~~~~~~~~l~~~gf~~~~ 235 (277)
T 1o54_A 179 EKDVDALFLDVPDP---------------------WNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIE 235 (277)
T ss_dssp CCSEEEEEECCSCG---------------------GGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEE
T ss_pred CCccCEEEECCcCH---------------------HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceeE
Confidence 45799999987642 145566788999999998874221 1234555666678998776
Q ss_pred Eec
Q 041136 175 KVE 177 (214)
Q Consensus 175 ~~~ 177 (214)
...
T Consensus 236 ~~~ 238 (277)
T 1o54_A 236 VWE 238 (277)
T ss_dssp EEC
T ss_pred EEE
Confidence 543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00052 Score=59.03 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=92.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||-||=|.=.++..|++.++ .. .++.|..++..+ .+.++++.+.-.+...+..-|+.++. +..
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~--~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~ 183 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFG--SR--VEGVTLSAAQAD---FGNRRARELRIDDHVRSRVCNMLDTP----FDK 183 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC--CE--EEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTSCC----CCT
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcC--CE--EEEEeCCHHHHH---HHHHHHHHcCCCCceEEEECChhcCC----CCC
Confidence 67789999999766667777888874 34 455664444332 35666655432223455666777653 456
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-cCCCCC------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-RDDHPY------------------ 156 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~~~~Py------------------ 156 (214)
..||.|+.+.--.- + . ...+++.+..+|+|||.+.++- .....+
T Consensus 184 ~~fD~V~~~~~l~~------------~--~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 3vc1_A 184 GAVTASWNNESTMY------------V--D---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNI 246 (312)
T ss_dssp TCEEEEEEESCGGG------------S--C---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCC
T ss_pred CCEeEEEECCchhh------------C--C---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCC
Confidence 78999998744211 1 1 5677888999999999986553 222211
Q ss_pred -CcccHhhHHHhcCCEEEEEecCCCCCCCCCc
Q 041136 157 -NQWNVMGLADKLGLVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 157 -~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 187 (214)
+.-.+..+.+++||.+.+...+.+...|.|.
T Consensus 247 ~s~~~~~~~l~~aGf~~~~~~~~~~~~~~~w~ 278 (312)
T 3vc1_A 247 HSRREYLRAMADNRLVPHTIVDLTPDTLPYWE 278 (312)
T ss_dssp CBHHHHHHHHHTTTEEEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence 2233567888999999998877654444443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0001 Score=66.62 Aligned_cols=136 Identities=17% Similarity=0.151 Sum_probs=86.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|=|.=.++..|++. + ..| |+.|..+...+ .+.+|++.+. ..+.++ .-|+.++.. ...+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~-g--~~V--~gvDis~~al~---~A~~n~~~~~-~~v~~~-~~D~~~~~~----~~~~ 298 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM-G--AEV--VGVEDDLASVL---SLQKGLEANA-LKAQAL-HSDVDEALT----EEAR 298 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT-T--CEE--EEEESBHHHHH---HHHHHHHHTT-CCCEEE-ECSTTTTSC----TTCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc-C--CEE--EEEECCHHHHH---HHHHHHHHcC-CCeEEE-Ecchhhccc----cCCC
Confidence 5679999996666666667775 2 344 45664444432 4667776543 234443 456665432 2478
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc------cHhhHHHhcCCE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW------NVMGLADKLGLV 171 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W------~i~~lA~~~gl~ 171 (214)
||.||.|.|...+.. .....+..|+..+..+|++||.+.|......+|..| ++..+ +..||.
T Consensus 299 fD~Ii~npp~~~~~~-----------~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~~v~~l-~~~gF~ 366 (381)
T 3dmg_A 299 FDIIVTNPPFHVGGA-----------VILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGAFQTL-KVAEYK 366 (381)
T ss_dssp EEEEEECCCCCTTCS-----------SCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSCCEEE-EESSSE
T ss_pred eEEEEECCchhhccc-----------ccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhccEEEE-eCCCEE
Confidence 999999999774321 123467789999999999999998886655555432 23334 667777
Q ss_pred EEEEecCC
Q 041136 172 LKEKVEFL 179 (214)
Q Consensus 172 l~~~~~F~ 179 (214)
+.+.....
T Consensus 367 Vl~a~~~~ 374 (381)
T 3dmg_A 367 VLFAEKRG 374 (381)
T ss_dssp EEEEECC-
T ss_pred EEEEEEec
Confidence 77655443
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.7e-05 Score=60.12 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=74.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-+|=|.=.++..|++... ..-.++.|..++..+ .+.+|+..+.. ++ .+...|+.+.-........
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~---~~~v~~vD~~~~~~~---~a~~~~~~~~~-~~-~~~~~d~~~~~~~~~~~~~ 100 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACP---GVSVTAVDLSMDALA---VARRNAERFGA-VV-DWAAADGIEWLIERAERGR 100 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCT---TEEEEEEECC------------------------CCHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCC---CCeEEEEECCHHHHH---HHHHHHHHhCC-ce-EEEEcchHhhhhhhhhccC
Confidence 6788999999888788888998853 344555664443331 35555554432 22 2334455541000001137
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHH-----------HHhHHHHHHHHHHHHhccCCCCE-EEEEecCCCCCCcccHhhH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLI-----------KRHKNLLEAFLKNGREMLGEGGE-VHVTLRDDHPYNQWNVMGL 164 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i-----------~~n~~LL~~Ff~Sa~~lL~~~G~-i~VTl~~~~Py~~W~i~~l 164 (214)
+||.|+.|.|....... ........ ....+.+..|++.+..+|+++|. +.+.+.. ...-.+..+
T Consensus 101 ~fD~i~~npp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~ 176 (215)
T 4dzr_A 101 PWHAIVSNPPYIPTGEI-DQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---NQADEVARL 176 (215)
T ss_dssp CBSEEEECCCCCC-------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT---SCHHHHHHH
T ss_pred cccEEEECCCCCCCccc-cccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC---ccHHHHHHH
Confidence 89999999997654210 00000000 01123458999999999999999 6666432 223345556
Q ss_pred HH--hcCCEEEE
Q 041136 165 AD--KLGLVLKE 174 (214)
Q Consensus 165 A~--~~gl~l~~ 174 (214)
.. +.|+...+
T Consensus 177 l~~~~~gf~~~~ 188 (215)
T 4dzr_A 177 FAPWRERGFRVR 188 (215)
T ss_dssp TGGGGGGTEECC
T ss_pred HHHhhcCCceEE
Confidence 66 77876544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00036 Score=55.62 Aligned_cols=130 Identities=14% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-||=|.=.++..|++. + ..+ ++.|..+++.+ .+.++ ..++. +...|+.++. +...+|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~--~~v--~gvD~s~~~~~---~a~~~-----~~~~~-~~~~d~~~~~----~~~~~f 103 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-G--HQI--EGLEPATRLVE---LARQT-----HPSVT-FHHGTITDLS----DSPKRW 103 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-T--CCE--EEECCCHHHHH---HHHHH-----CTTSE-EECCCGGGGG----GSCCCE
T ss_pred CCeEEEecCCCCHHHHHHHhc-C--CeE--EEEeCCHHHHH---HHHHh-----CCCCe-EEeCcccccc----cCCCCe
Confidence 789999997776777778876 2 344 45564443331 12222 11343 4455777754 445789
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-------------CCcccHhhHH
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-------------YNQWNVMGLA 165 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-------------y~~W~i~~lA 165 (214)
|.|+.++.-.-.. .+-+..+++.+..+|++||.+.++...... ++.-.+..+.
T Consensus 104 D~v~~~~~l~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (203)
T 3h2b_A 104 AGLLAWYSLIHMG--------------PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQAL 169 (203)
T ss_dssp EEEEEESSSTTCC--------------TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHH
T ss_pred EEEEehhhHhcCC--------------HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHH
Confidence 9999975322211 012346778888999999999888755432 3344577899
Q ss_pred HhcCCEEEEEecCCC
Q 041136 166 DKLGLVLKEKVEFLK 180 (214)
Q Consensus 166 ~~~gl~l~~~~~F~~ 180 (214)
+++||.+.+...+..
T Consensus 170 ~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 170 ETAGFQVTSSHWDPR 184 (203)
T ss_dssp HHTTEEEEEEEECTT
T ss_pred HHCCCcEEEEEecCC
Confidence 999999999877765
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00014 Score=67.72 Aligned_cols=143 Identities=12% Similarity=0.103 Sum_probs=89.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||=+|=|-=+.+..||+..+....|+| .|..+...+ .+.+|++.+.-.+ ..+..-|++++... ....
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~a--vDis~~~l~---~~~~n~~r~g~~n-v~~~~~D~~~~~~~---~~~~ 187 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILA--NEFSASRVK---VLHANISRCGISN-VALTHFDGRVFGAA---VPEM 187 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEE--ECSSHHHHH---HHHHHHHHHTCCS-EEEECCCSTTHHHH---STTC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHH---HHHHHHHHcCCCc-EEEEeCCHHHhhhh---cccc
Confidence 7889999986555556668888754445555 454333321 4677877664333 34556688876421 2357
Q ss_pred ccEEEEcCCCCCCCCCCC--c----ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHHHhcC
Q 041136 98 FDVIIFNFPHAGHSPPLS--E----QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLADKLG 169 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~--~----~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA~~~g 169 (214)
||+|+.|-|+.|.+.-.. + .....+.....+-..++.+|..+|++||.+.++-|.-.|. +.-.|..+.++.+
T Consensus 188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 999999999987532000 0 1112233345566789999999999999998887765553 4444555555543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=66.21 Aligned_cols=137 Identities=14% Similarity=0.149 Sum_probs=83.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+||-+|=|.=.++..|++... +..+ |+.|..+...+ .+.+|++.+.-.+ ..-++.-|+.+ .+.
T Consensus 221 ~~~~~VLDlGcG~G~~s~~la~~~p-~~~V--~gvD~s~~al~---~Ar~n~~~ngl~~~~~v~~~~~D~~~-----~~~ 289 (375)
T 4dcm_A 221 NLEGEIVDLGCGNGVIGLTLLDKNP-QAKV--VFVDESPMAVA---SSRLNVETNMPEALDRCEFMINNALS-----GVE 289 (375)
T ss_dssp SCCSEEEEETCTTCHHHHHHHHHCT-TCEE--EEEESCHHHHH---HHHHHHHHHCGGGGGGEEEEECSTTT-----TCC
T ss_pred cCCCeEEEEeCcchHHHHHHHHHCC-CCEE--EEEECcHHHHH---HHHHHHHHcCCCcCceEEEEechhhc-----cCC
Confidence 3448999999666666777888762 3344 55664444432 4677776653111 12233445543 244
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcc------cHhhHHHhc
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQW------NVMGLADKL 168 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W------~i~~lA~~~ 168 (214)
..+||.|+.|.|...... ....+...||+.+..+|++||.+.|......+|..| ++..+++..
T Consensus 290 ~~~fD~Ii~nppfh~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg~~~~~a~~~ 358 (375)
T 4dcm_A 290 PFRFNAVLCNPPFHQQHA-----------LTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNN 358 (375)
T ss_dssp TTCEEEEEECCCC------------------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHSCCEEEEECS
T ss_pred CCCeeEEEECCCcccCcc-----------cCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcCCEEEEeeCC
Confidence 578999999999653210 112244578999999999999998876665566433 344456666
Q ss_pred CCEEEEE
Q 041136 169 GLVLKEK 175 (214)
Q Consensus 169 gl~l~~~ 175 (214)
||.+.++
T Consensus 359 ~F~V~~~ 365 (375)
T 4dcm_A 359 KFVVLKA 365 (375)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 7776664
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=9.1e-05 Score=61.46 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=85.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC-CCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM-DRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L-~~~~~~~~~ 96 (214)
+..+||-||=|.=.++..||+... ..++ ++.|..++..+ .+.++++...-.+ ..+...||.++ .. .+...
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v--~giD~s~~~l~---~a~~~~~~~~l~n-v~~~~~Da~~~l~~--~~~~~ 104 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRP-EQDF--LGIEVHSPGVG---ACLASAHEEGLSN-LRVMCHDAVEVLHK--MIPDN 104 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCT-TSEE--EEECSCHHHHH---HHHHHHHHTTCSS-EEEECSCHHHHHHH--HSCTT
T ss_pred CCCeEEEEeeeChHHHHHHHHHCC-CCeE--EEEEecHHHHH---HHHHHHHHhCCCc-EEEEECCHHHHHHH--HcCCC
Confidence 567899999666666666888763 3344 55675444432 3666665543233 45567788874 21 14467
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
+||.|+.|||-.-.+.. . ...+.+-..|++.+..+|+|||.+++... ..+|-.|-...+.+..++...
T Consensus 105 ~~d~v~~~~~~p~~~~~--~------~~rr~~~~~~l~~~~r~LkpGG~l~i~td-~~~~~~~~~~~~~~~~~~~~~ 172 (218)
T 3dxy_A 105 SLRMVQLFFPDPWHKAR--H------NKRRIVQVPFAELVKSKLQLGGVFHMATD-WEPYAEHMLEVMSSIDGYKNL 172 (218)
T ss_dssp CEEEEEEESCCCCCSGG--G------GGGSSCSHHHHHHHHHHEEEEEEEEEEES-CHHHHHHHHHHHHTSTTEEEC
T ss_pred ChheEEEeCCCCccchh--h------hhhhhhhHHHHHHHHHHcCCCcEEEEEeC-CHHHHHHHHHHHHhCCCcccc
Confidence 89999999875432210 0 01122234689999999999999987732 244666766666666665543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0015 Score=54.29 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=90.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.++ .+++ +.|..++..+ .+.+++......+...+...|+.++. +.
T Consensus 58 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~--gvD~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~ 126 (273)
T 3bus_A 58 DVRSGDRVLDVGCGIGKPAVRLATARD--VRVT--GISISRPQVN---QANARATAAGLANRVTFSYADAMDLP----FE 126 (273)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHSC--CEEE--EEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTSCC----SC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC--CEEE--EEeCCHHHHH---HHHHHHHhcCCCcceEEEECccccCC----CC
Confidence 456788999999877777778888763 3454 4453333321 24444443321122444556777753 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-CCC------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-DHP------------------ 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-~~P------------------ 155 (214)
..+||.|+.+..-.-.. + ...+++.+..+|+|||.+.|+-.. ..|
T Consensus 127 ~~~fD~v~~~~~l~~~~-------------~---~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T 3bus_A 127 DASFDAVWALESLHHMP-------------D---RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGV 190 (273)
T ss_dssp TTCEEEEEEESCTTTSS-------------C---HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTC
T ss_pred CCCccEEEEechhhhCC-------------C---HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCc
Confidence 57899999886533221 0 146788899999999998766321 111
Q ss_pred ---CCcccHhhHHHhcCCEEEEEecCCCCCCCCCc
Q 041136 156 ---YNQWNVMGLADKLGLVLKEKVEFLKQDFPGYH 187 (214)
Q Consensus 156 ---y~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~ 187 (214)
++.-.+..+.+++||.+.+...+.....+.|.
T Consensus 191 ~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~ 225 (273)
T 3bus_A 191 LSLGGIDEYESDVRQAELVVTSTVDISAQARPSLV 225 (273)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEECHHHHTTHHH
T ss_pred cCCCCHHHHHHHHHHcCCeEEEEEECcHhHHHHHH
Confidence 22334667888999999887776554444443
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00081 Score=54.75 Aligned_cols=132 Identities=15% Similarity=0.171 Sum_probs=84.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+..+||-||=|.=.++..|++. + .+++ +.|..++..+ .+.++. .. ....+...|+.++. +..
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v~--~vD~s~~~~~---~a~~~~---~~-~~~~~~~~d~~~~~----~~~ 114 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT-G--YKAV--GVDISEVMIQ---KGKERG---EG-PDLSFIKGDLSSLP----FEN 114 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT-T--CEEE--EEESCHHHHH---HHHTTT---CB-TTEEEEECBTTBCS----SCT
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc-C--CeEE--EEECCHHHHH---HHHhhc---cc-CCceEEEcchhcCC----CCC
Confidence 447889999997777777778876 2 3554 5554333321 122221 11 23345566777764 446
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-------------------CC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-------------------PY 156 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-------------------Py 156 (214)
.+||.|+.+....-.. + ...+++.+..+|++||.+.|+..... .+
T Consensus 115 ~~fD~v~~~~~l~~~~----~------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (242)
T 3l8d_A 115 EQFEAIMAINSLEWTE----E------------PLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTM 178 (242)
T ss_dssp TCEEEEEEESCTTSSS----C------------HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCC
T ss_pred CCccEEEEcChHhhcc----C------------HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCC
Confidence 7899999876543221 0 12567888999999999988753211 14
Q ss_pred CcccHhhHHHhcCCEEEEEecCC
Q 041136 157 NQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 157 ~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+.+.+..+..++||.+.+...+.
T Consensus 179 ~~~~~~~~l~~~Gf~~~~~~~~~ 201 (242)
T 3l8d_A 179 MPWEFEQLVKEQGFKVVDGIGVY 201 (242)
T ss_dssp CHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEeeccc
Confidence 45678899999999998876553
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00034 Score=63.55 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=90.6
Q ss_pred ccccCCCC-CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 11 KWISHYTN-NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 11 ~~~~~~~~-~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
.++..+.. +++||=+|=|.=.||..+|+. + .. +|+.|..++..+ .+.+|++.+. ....+. .-|+.++-.
T Consensus 206 ~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~-g--a~--V~avDis~~al~---~a~~n~~~ng-~~~~~~-~~D~~~~l~ 275 (393)
T 4dmg_A 206 RLFEAMVRPGERVLDVYSYVGGFALRAARK-G--AY--ALAVDKDLEALG---VLDQAALRLG-LRVDIR-HGEALPTLR 275 (393)
T ss_dssp HHHHTTCCTTCEEEEESCTTTHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHHHHHT-CCCEEE-ESCHHHHHH
T ss_pred HHHHHHhcCCCeEEEcccchhHHHHHHHHc-C--Ce--EEEEECCHHHHH---HHHHHHHHhC-CCCcEE-EccHHHHHH
Confidence 34445555 899999986655666667764 2 34 677885554442 5777877654 233444 667766422
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cc--cHhhHHH
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QW--NVMGLAD 166 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W--~i~~lA~ 166 (214)
. +... ||.||.|.|...... .. +..-......++..|..+|++||.+++..|...+.. .| .+...+.
T Consensus 276 ~--~~~~-fD~Ii~dpP~f~~~~----~~---~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~ 345 (393)
T 4dmg_A 276 G--LEGP-FHHVLLDPPTLVKRP----EE---LPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAA 345 (393)
T ss_dssp T--CCCC-EEEEEECCCCCCSSG----GG---HHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred H--hcCC-CCEEEECCCcCCCCH----HH---HHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 2334 999999999865421 11 233456677889999999999999987777765432 32 2445666
Q ss_pred hcCCEEE
Q 041136 167 KLGLVLK 173 (214)
Q Consensus 167 ~~gl~l~ 173 (214)
+.|..+.
T Consensus 346 ~~g~~~~ 352 (393)
T 4dmg_A 346 DLGRRLR 352 (393)
T ss_dssp HHTCCEE
T ss_pred HhCCeEE
Confidence 6776543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00041 Score=57.15 Aligned_cols=137 Identities=9% Similarity=0.094 Sum_probs=86.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.++ ..+ |+.|..++..+ .+.+++... ....+...|+.++. +.
T Consensus 52 ~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~v--~~vD~s~~~~~---~a~~~~~~~---~~~~~~~~d~~~~~----~~ 117 (266)
T 3ujc_A 52 ELNENSKVLDIGSGLGGGCMYINEKYG--AHT--HGIDICSNIVN---MANERVSGN---NKIIFEANDILTKE----FP 117 (266)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CEE--EEEESCHHHHH---HHHHTCCSC---TTEEEEECCTTTCC----CC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHcC--CEE--EEEeCCHHHHH---HHHHHhhcC---CCeEEEECccccCC----CC
Confidence 456788999999887777888998873 344 55554333221 122222111 23444556777763 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-------------------C
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-------------------P 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-------------------P 155 (214)
..+||.|+.+..-.-. ...-...+++.+..+|+|||.+.++-.... .
T Consensus 118 ~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (266)
T 3ujc_A 118 ENNFDLIYSRDAILAL--------------SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTL 183 (266)
T ss_dssp TTCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCC
T ss_pred CCcEEEEeHHHHHHhc--------------ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCC
Confidence 6789999998532211 113446788889999999999877642111 1
Q ss_pred CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
++.-.+..+.+++||...+...+.
T Consensus 184 ~~~~~~~~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 184 ITVEEYADILTACNFKNVVSKDLS 207 (266)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEECH
T ss_pred CCHHHHHHHHHHcCCeEEEEEeCC
Confidence 234457788889999998876554
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00024 Score=60.93 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=87.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+..+||-||=|.=.++..||....++.+ .++.|..++..+ .+.+++......+...+...|+.++. +.
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~- 185 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQ--LVGIDYDPEALD---GATRLAAGHALAGQITLHRQDAWKLD----TR- 185 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCE--EEEEESCHHHHH---HHHHHHTTSTTGGGEEEEECCGGGCC----CC-
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCe--EEEEECCHHHHH---HHHHHHHhcCCCCceEEEECchhcCC----cc-
Confidence 456889999997766666667533323334 455664443331 34444433221122556677888864 33
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC--------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-------------------- 155 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-------------------- 155 (214)
..||.|+.|.+..-.. +..-...+++.+..+|+|||.+.|+.....|
T Consensus 186 ~~fD~v~~~~~~~~~~-------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~ 252 (305)
T 3ocj_A 186 EGYDLLTSNGLNIYEP-------------DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQL 252 (305)
T ss_dssp SCEEEEECCSSGGGCC-------------CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHH
T ss_pred CCeEEEEECChhhhcC-------------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhh
Confidence 7899999987654321 1234556888899999999999887532111
Q ss_pred ----------------CCcccHhhHHHhcCCEEEEEec
Q 041136 156 ----------------YNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 156 ----------------y~~W~i~~lA~~~gl~l~~~~~ 177 (214)
++.-.+..+.+++||...+...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 253 QQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEEC
T ss_pred hhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEc
Confidence 2334466788899999988765
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00025 Score=63.45 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=89.4
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+..+ .+.+||-+|=|.=+|+..+|+. . --+++.|..++..+ .+.+|++.+.-.+ ..++.-|+.++-....
T Consensus 205 ~~~~-~~~~VLDlg~G~G~~~~~la~~-~----~~v~~vD~s~~~~~---~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~ 274 (382)
T 1wxx_A 205 MERF-RGERALDVFSYAGGFALHLALG-F----REVVAVDSSAEALR---RAEENARLNGLGN-VRVLEANAFDLLRRLE 274 (382)
T ss_dssp GGGC-CEEEEEEETCTTTHHHHHHHHH-E----EEEEEEESCHHHHH---HHHHHHHHTTCTT-EEEEESCHHHHHHHHH
T ss_pred HHhc-CCCeEEEeeeccCHHHHHHHHh-C----CEEEEEECCHHHHH---HHHHHHHHcCCCC-ceEEECCHHHHHHHHH
Confidence 3344 6789999996666667667776 2 23555665444332 4777777654334 4455667766421100
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-Ccc-c-HhhHHHhcC
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQW-N-VMGLADKLG 169 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W-~-i~~lA~~~g 169 (214)
-...+||.||.|.|..+.... . +.........++..+..+|+++|.+.++.+...+- +.| + +.+.+.+.|
T Consensus 275 ~~~~~fD~Ii~dpP~~~~~~~----~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g 347 (382)
T 1wxx_A 275 KEGERFDLVVLDPPAFAKGKK----D---VERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAH 347 (382)
T ss_dssp HTTCCEEEEEECCCCSCCSTT----S---HHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred hcCCCeeEEEECCCCCCCChh----H---HHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 014689999999998775321 1 23345677889999999999999998887765432 122 2 334666776
Q ss_pred CEE
Q 041136 170 LVL 172 (214)
Q Consensus 170 l~l 172 (214)
..+
T Consensus 348 ~~~ 350 (382)
T 1wxx_A 348 RLL 350 (382)
T ss_dssp CCE
T ss_pred CeE
Confidence 433
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00047 Score=56.68 Aligned_cols=135 Identities=12% Similarity=0.097 Sum_probs=86.3
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+...++..+||-||=|.=.++..|++. + .++ |+.|..++..+ .+.++ + -+...|+.++.. .
T Consensus 36 l~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v--~gvD~s~~~~~---~a~~~--------~-~~~~~d~~~~~~--~ 96 (240)
T 3dli_A 36 IPYFKGCRRVLDIGCGRGEFLELCKEE-G--IES--IGVDINEDMIK---FCEGK--------F-NVVKSDAIEYLK--S 96 (240)
T ss_dssp GGGTTTCSCEEEETCTTTHHHHHHHHH-T--CCE--EEECSCHHHHH---HHHTT--------S-EEECSCHHHHHH--T
T ss_pred HhhhcCCCeEEEEeCCCCHHHHHHHhC-C--CcE--EEEECCHHHHH---HHHhh--------c-ceeeccHHHHhh--h
Confidence 334567899999996666667778876 3 355 56664333321 12222 3 344566665421 2
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC----------------CC
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH----------------PY 156 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~----------------Py 156 (214)
+...+||.|+.+.--.-. ...-+..+++.+..+|+|||.+.++.-... ++
T Consensus 97 ~~~~~fD~i~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
T 3dli_A 97 LPDKYLDGVMISHFVEHL--------------DPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPV 162 (240)
T ss_dssp SCTTCBSEEEEESCGGGS--------------CGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCC
T ss_pred cCCCCeeEEEECCchhhC--------------CcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccC
Confidence 456789999987432111 111346788889999999999988754321 23
Q ss_pred CcccHhhHHHhcCCEEEEEecCCC
Q 041136 157 NQWNVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 157 ~~W~i~~lA~~~gl~l~~~~~F~~ 180 (214)
+...+..+.+++||.+.+...+.+
T Consensus 163 ~~~~l~~~l~~aGf~~~~~~~~~~ 186 (240)
T 3dli_A 163 HPETLKFILEYLGFRDVKIEFFEE 186 (240)
T ss_dssp CHHHHHHHHHHHTCEEEEEEEECC
T ss_pred CHHHHHHHHHHCCCeEEEEEEecc
Confidence 455688899999999998887764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.4e-05 Score=64.19 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=82.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh---C--CCEEEEcccccc-CCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS---R--GCLVLHGVNVHT-MDRHP 91 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~---~--g~~Vl~~VDAt~-L~~~~ 91 (214)
...+||-||=|.=.|+..||+.+. ..+ .++.|..+.+.+ .|.++++.|+. . .-.-+...||.+ |...
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p-~~~--v~GiDis~~~l~---~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~- 118 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFP-DTL--ILGLEIRVKVSD---YVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNF- 118 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGST-TSE--EEEEESCHHHHH---HHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHH-
T ss_pred CCCeEEEEccCCcHHHHHHHHHCC-CCe--EEEEECCHHHHH---HHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhh-
Confidence 456799999666556666888763 334 456675444442 47777777653 1 223445568875 4321
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCE
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLV 171 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~ 171 (214)
+....||+|+.+||-.-.+. +. ...+.+...|++.+..+|++||.++++... ..|..|-+..+....++.
T Consensus 119 -~~~~~~D~v~~~~~dp~~k~----~h----~krr~~~~~~l~~~~~~LkpGG~l~~~td~-~~~~~~~~~~l~~~~~f~ 188 (235)
T 3ckk_A 119 -FYKGQLTKMFFLFPDPHFKR----TK----HKWRIISPTLLAEYAYVLRVGGLVYTITDV-LELHDWMCTHFEEHPLFE 188 (235)
T ss_dssp -CCTTCEEEEEEESCC-------------------CCCHHHHHHHHHHEEEEEEEEEEESC-HHHHHHHHHHHHTSTTEE
T ss_pred -CCCcCeeEEEEeCCCchhhh----hh----hhhhhhhHHHHHHHHHHCCCCCEEEEEeCC-HHHHHHHHHHHHHCCCcc
Confidence 44568999999998543221 00 112223467899999999999999887432 335667776666555444
Q ss_pred E
Q 041136 172 L 172 (214)
Q Consensus 172 l 172 (214)
.
T Consensus 189 ~ 189 (235)
T 3ckk_A 189 R 189 (235)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0017 Score=53.25 Aligned_cols=136 Identities=9% Similarity=0.120 Sum_probs=82.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
..+.+.+||-+|=|.=.++..|++.+++...++ +.|..++..+ .+.++.+.. .++ .+...|+.+....+ +.
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~--gvD~s~~~i~---~~~~~a~~~--~~v-~~~~~d~~~~~~~~-~~ 144 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVY--AVEFSHRSGR---DLINLAKKR--TNI-IPVIEDARHPHKYR-ML 144 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEE--EECCCHHHHH---HHHHHHHHC--TTE-EEECSCTTCGGGGG-GG
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEE--EEECCHHHHH---HHHHHhhcc--CCe-EEEEcccCChhhhc-cc
Confidence 356788999999777777777999886444554 5564333221 222333222 233 45566777643211 23
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-----C----CCcccHhhHH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-----P----YNQWNVMGLA 165 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-----P----y~~W~i~~lA 165 (214)
..+||.|+.|.|... ....++..+..+|+++|.+.|+..... | +..+ .++.
T Consensus 145 ~~~~D~V~~~~~~~~------------------~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~l 204 (233)
T 2ipx_A 145 IAMVDVIFADVAQPD------------------QTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASE--VKKM 204 (233)
T ss_dssp CCCEEEEEECCCCTT------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHH--HHTT
T ss_pred CCcEEEEEEcCCCcc------------------HHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHH--HHHH
Confidence 467999999988211 123455668899999999988765311 1 1111 3566
Q ss_pred HhcCCEEEEEecCC
Q 041136 166 DKLGLVLKEKVEFL 179 (214)
Q Consensus 166 ~~~gl~l~~~~~F~ 179 (214)
.++||.+.+..+.+
T Consensus 205 ~~~Gf~~~~~~~~~ 218 (233)
T 2ipx_A 205 QQENMKPQEQLTLE 218 (233)
T ss_dssp GGGTEEEEEEEECT
T ss_pred HHCCCceEEEEecC
Confidence 78899998876655
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00098 Score=51.81 Aligned_cols=110 Identities=19% Similarity=0.260 Sum_probs=70.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~ 93 (214)
+..++.+||-+|=|.=.++..+++. +.+++++ |..++..+ .+.+++......+ ...+...|+.+. +
T Consensus 49 ~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~--D~~~~~~~---~a~~~~~~~~~~~~~~~~~~~d~~~~-----~ 115 (194)
T 1dus_A 49 VVDKDDDILDLGCGYGVIGIALADE---VKSTTMA--DINRRAIK---LAKENIKLNNLDNYDIRVVHSDLYEN-----V 115 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEE--ESCHHHHH---HHHHHHHHTTCTTSCEEEEECSTTTT-----C
T ss_pred ccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEE--ECCHHHHH---HHHHHHHHcCCCccceEEEECchhcc-----c
Confidence 3457889999997766666667776 2355554 53333331 3555555443222 133444566552 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
....||.|+.|.|.... ...+..+++.+..+|+++|.+.++...
T Consensus 116 ~~~~~D~v~~~~~~~~~---------------~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 116 KDRKYNKIITNPPIRAG---------------KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TTSCEEEEEECCCSTTC---------------HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccCCceEEEECCCcccc---------------hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 35679999999986431 235667889999999999999888554
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00057 Score=56.57 Aligned_cols=131 Identities=11% Similarity=0.135 Sum_probs=86.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-+|-|.=.++..|++.+++...+ +++|..++..+ .+.+|++...-.+...+..-|+.+. +.
T Consensus 90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v--~~~D~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 159 (255)
T 3mb5_A 90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRV--VSYEIREDFAK---LAWENIKWAGFDDRVTIKLKDIYEG-----IE 159 (255)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEE--EEECSCHHHHH---HHHHHHHHHTCTTTEEEECSCGGGC-----CC
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHhCCCeEE--EEEecCHHHHH---HHHHHHHHcCCCCceEEEECchhhc-----cC
Confidence 45678899999988777888899987654455 45565444432 4677777654334355666777743 34
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC--CEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG--LVL 172 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g--l~l 172 (214)
...||.|+.|.|.. ..++..+..+|+++|.+.+..-.. .....+....++.| +..
T Consensus 160 ~~~~D~v~~~~~~~---------------------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~g~~f~~ 216 (255)
T 3mb5_A 160 EENVDHVILDLPQP---------------------ERVVEHAAKALKPGGFFVAYTPCS--NQVMRLHEKLREFKDYFMK 216 (255)
T ss_dssp CCSEEEEEECSSCG---------------------GGGHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHTGGGBSC
T ss_pred CCCcCEEEECCCCH---------------------HHHHHHHHHHcCCCCEEEEEECCH--HHHHHHHHHHHHcCCCccc
Confidence 56799999987732 235677889999999998762111 12334556667788 766
Q ss_pred EEEecC
Q 041136 173 KEKVEF 178 (214)
Q Consensus 173 ~~~~~F 178 (214)
.+....
T Consensus 217 ~~~~e~ 222 (255)
T 3mb5_A 217 PRTINV 222 (255)
T ss_dssp CEEECC
T ss_pred cEEEEE
Confidence 665443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00079 Score=53.40 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=70.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-+|=|.=.++..+++. + ... .|+.|..++..+ .+.+|++.+.. ....+..-|+.++.. .+...
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~-~~~--v~~vD~~~~~~~---~a~~~~~~~~~-~~v~~~~~d~~~~~~--~~~~~ 112 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-G-AAS--VLFVESDQRSAA---VIARNIEALGL-SGATLRRGAVAAVVA--AGTTS 112 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-T-CSE--EEEEECCHHHHH---HHHHHHHHHTC-SCEEEEESCHHHHHH--HCCSS
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-C-CCe--EEEEECCHHHHH---HHHHHHHHcCC-CceEEEEccHHHHHh--hccCC
Confidence 46789999985555555545553 2 223 455664444442 46777776643 334455667776532 12357
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHh--ccCCCCEEEEEecCC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGRE--MLGEGGEVHVTLRDD 153 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~--lL~~~G~i~VTl~~~ 153 (214)
+||.|+.|.|.... ...+..++..+.. +|+++|.+.|.....
T Consensus 113 ~fD~i~~~~p~~~~---------------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 113 PVDLVLADPPYNVD---------------SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CCSEEEECCCTTSC---------------HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CccEEEECCCCCcc---------------hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 89999999996542 1345556666666 999999998886543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00049 Score=56.78 Aligned_cols=136 Identities=10% Similarity=0.126 Sum_probs=84.9
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
....++.+||-||=|.=.++..|++... . .|+.|..++..+ .+.+++....-.++. +...|+.++. +
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~--v~~vD~s~~~~~---~a~~~~~~~~~~~v~-~~~~d~~~~~----~ 83 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPYVQ---E--CIGVDATKEMVE---VASSFAQEKGVENVR-FQQGTAESLP----F 83 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGSS---E--EEEEESCHHHHH---HHHHHHHHHTCCSEE-EEECBTTBCC----S
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHhCC---E--EEEEECCHHHHH---HHHHHHHHcCCCCeE-EEecccccCC----C
Confidence 3557789999999777667777877642 3 455665444432 355555443322343 3455777653 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC--------------------
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD-------------------- 153 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~-------------------- 153 (214)
....||.|+.++.-.-.. -...+++.+..+|++||.+.++-...
T Consensus 84 ~~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (239)
T 1xxl_A 84 PDDSFDIITCRYAAHHFS----------------DVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPS 147 (239)
T ss_dssp CTTCEEEEEEESCGGGCS----------------CHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTT
T ss_pred CCCcEEEEEECCchhhcc----------------CHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhcccc
Confidence 567899999986432211 12467888899999999997763211
Q ss_pred --CCCCcccHhhHHHhcCCEEEEEecC
Q 041136 154 --HPYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 154 --~Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
..++.-.+..+.+++||.......+
T Consensus 148 ~~~~~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 148 HVRESSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp CCCCCBHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccCCCCHHHHHHHHHHCCCcEEEEEee
Confidence 1133334667888899988775544
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00046 Score=58.52 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=83.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
...++.+||-+|=|.=.++..|++...+...+ +++|..++..+ .+.+|++.+ . .....+...|+.+ .+
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v--~~vD~s~~~~~---~a~~~~~~~~g-~~~v~~~~~d~~~-----~~ 175 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYALNGKGTL--TVVERDEDNLK---KAMDNLSEFYD-IGNVRTSRSDIAD-----FI 175 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEE--EEECSCHHHHH---HHHHHHHTTSC-CTTEEEECSCTTT-----CC
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHHcCCCCEE--EEEECCHHHHH---HHHHHHHhcCC-CCcEEEEECchhc-----cC
Confidence 45678899999988777888899885444444 55565444332 355665543 2 1223344557765 23
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
....||.|+.+.|+. ..+++.+..+|+++|.+.+..... ....++.....+.|+...
T Consensus 176 ~~~~fD~Vi~~~~~~---------------------~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 176 SDQMYDAVIADIPDP---------------------WNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp CSCCEEEEEECCSCG---------------------GGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEEEE
T ss_pred cCCCccEEEEcCcCH---------------------HHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCeEE
Confidence 456899999977642 145677889999999998874321 133556666677899887
Q ss_pred EEec
Q 041136 174 EKVE 177 (214)
Q Consensus 174 ~~~~ 177 (214)
+...
T Consensus 233 ~~~~ 236 (275)
T 1yb2_A 233 ETVE 236 (275)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7554
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00046 Score=55.65 Aligned_cols=133 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-------EEEEccccccCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-------LVLHGVNVHTMD 88 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-------~Vl~~VDAt~L~ 88 (214)
.+...+||-||=|.=.++..|++. + .++ ++.|..+...+ .+.+++ +..+. .-+...|+..+.
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~vD~s~~~~~---~a~~~~---~~~~~~~~~~~~~~~~~~d~~~~~ 96 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-G--YSV--TGIDINSEAIR---LAETAA---RSPGLNQKTGGKAEFKVENASSLS 96 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHT---TCCSCCSSSSCEEEEEECCTTSCC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-C--CeE--EEEECCHHHHH---HHHHHH---HhcCCccccCcceEEEEecccccC
Confidence 457889999997766677778776 2 344 45564333321 233332 22333 344555666653
Q ss_pred CCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC---------------
Q 041136 89 RHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD--------------- 153 (214)
Q Consensus 89 ~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~--------------- 153 (214)
+...+||.|+.+....-.. +.+....+++.+..+|++||.+.++-...
T Consensus 97 ----~~~~~~D~v~~~~~l~~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~ 159 (235)
T 3sm3_A 97 ----FHDSSFDFAVMQAFLTSVP-------------DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDF 159 (235)
T ss_dssp ----SCTTCEEEEEEESCGGGCC-------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHH
T ss_pred ----CCCCceeEEEEcchhhcCC-------------CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhc
Confidence 4567899999986544321 12334578888999999999997763211
Q ss_pred -----------------------CCCCcccHhhHHHhcCCEEEEEe
Q 041136 154 -----------------------HPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 154 -----------------------~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
..++.-.+..+.+++||.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 160 PITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp HHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred cchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence 01344557788889999988754
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0014 Score=57.53 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=94.5
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
|+.+.+-.-....-.++++||=+|=|-=+.+..||...+....|+|.-.+. +.+. .+.+|++.+.-.++ .+..-
T Consensus 87 Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~-~~l~----~~~~n~~r~g~~~v-~~~~~ 160 (309)
T 2b9e_A 87 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA-KRLA----SMATLLARAGVSCC-ELAEE 160 (309)
T ss_dssp CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH-HHHH----HHHHHHHHTTCCSE-EEEEC
T ss_pred ECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCH-HHHH----HHHHHHHHcCCCeE-EEEeC
Confidence 444444443344456788999887555555555888775444566654433 2222 46677766543233 44566
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCC--cc------cHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLS--EQ------DTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~--~~------~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
|+.++.... -....||+|+.|-|..|.+.-.. |. ....+.....+-...+..|..+|+ +|.+..+-|.-.
T Consensus 161 D~~~~~~~~-~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~ 238 (309)
T 2b9e_A 161 DFLAVSPSD-PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLC 238 (309)
T ss_dssp CGGGSCTTC-GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCC
T ss_pred ChHhcCccc-cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCC
Confidence 888875421 01146999999999987643111 10 001123334556778888998887 898877777655
Q ss_pred C-CCcccHhhHHHhc-C-CEEEE
Q 041136 155 P-YNQWNVMGLADKL-G-LVLKE 174 (214)
Q Consensus 155 P-y~~W~i~~lA~~~-g-l~l~~ 174 (214)
| -+...|....+++ + +.+..
T Consensus 239 ~~Ene~~v~~~l~~~~~~~~~~~ 261 (309)
T 2b9e_A 239 QEENEDVVRDALQQNPGAFRLAP 261 (309)
T ss_dssp GGGTHHHHHHHHTTSTTTEEECC
T ss_pred hHHhHHHHHHHHHhCCCcEEEec
Confidence 5 3456666655544 5 66653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00083 Score=56.74 Aligned_cols=142 Identities=13% Similarity=0.004 Sum_probs=91.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||=||-|.=..+..||..++ +.-.|+.|..+...+ .+.+|++.+.-.++.+ +.-|+.++...+ ...
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~---~~~v~~vD~s~~~~~---~a~~~~~~~~l~~v~~-~~~d~~~~~~~~-~~~ 149 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRP---ELELVLVDATRKKVA---FVERAIEVLGLKGARA-LWGRAEVLAREA-GHR 149 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCT---TCEEEEEESCHHHHH---HHHHHHHHHTCSSEEE-EECCHHHHTTST-TTT
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCC---CCEEEEEECCHHHHH---HHHHHHHHhCCCceEE-EECcHHHhhccc-ccC
Confidence 46788999999776666667887763 344577786555442 5788888876545444 445777765311 124
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~~gl~l~~ 174 (214)
.+||.|+.+- +. + +..+++.+..+|++||.+.+.... .+.. .-.+...++..|+.+.+
T Consensus 150 ~~fD~I~s~a--~~---------------~---~~~ll~~~~~~LkpgG~l~~~~g~-~~~~e~~~~~~~l~~~G~~~~~ 208 (249)
T 3g89_A 150 EAYARAVARA--VA---------------P---LCVLSELLLPFLEVGGAAVAMKGP-RVEEELAPLPPALERLGGRLGE 208 (249)
T ss_dssp TCEEEEEEES--SC---------------C---HHHHHHHHGGGEEEEEEEEEEECS-CCHHHHTTHHHHHHHHTEEEEE
T ss_pred CCceEEEECC--cC---------------C---HHHHHHHHHHHcCCCeEEEEEeCC-CcHHHHHHHHHHHHHcCCeEEE
Confidence 6799999852 11 0 246788899999999998765322 1212 23355667788999999
Q ss_pred EecCCCCCCCCC
Q 041136 175 KVEFLKQDFPGY 186 (214)
Q Consensus 175 ~~~F~~~~yPgY 186 (214)
..++......+.
T Consensus 209 ~~~~~~p~~~~~ 220 (249)
T 3g89_A 209 VLALQLPLSGEA 220 (249)
T ss_dssp EEEEECTTTCCE
T ss_pred EEEeeCCCCCCc
Confidence 888744333333
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00034 Score=60.95 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
-.+++.+||=+|=|-=.||..+|+. + +..++| .|..+... ..+.+|++.+.-.+....++-||.++..
T Consensus 122 ~~~~g~~VlD~~aG~G~~~i~~a~~-g-~~~V~a--vD~np~a~---~~~~~N~~~N~v~~~v~~~~~D~~~~~~----- 189 (278)
T 3k6r_A 122 VAKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIA--IEKDPYTF---KFLVENIHLNKVEDRMSAYNMDNRDFPG----- 189 (278)
T ss_dssp HCCTTCEEEETTCTTTTTTHHHHHH-T-CCEEEE--ECCCHHHH---HHHHHHHHHTTCTTTEEEECSCTTTCCC-----
T ss_pred hcCCCCEEEEecCcCcHHHHHHHHh-c-CCeEEE--EECCHHHH---HHHHHHHHHcCCCCcEEEEeCcHHHhcc-----
Confidence 3567899988774444444446654 3 345655 55433333 2578888877655667778889987643
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec--CCCCCCccc---HhhHHHhcC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR--DDHPYNQWN---VMGLADKLG 169 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~--~~~Py~~W~---i~~lA~~~g 169 (214)
...||+||.|.|+... .|+..|..+|++||-||+--. +... ..|. +..+++..|
T Consensus 190 ~~~~D~Vi~~~p~~~~--------------------~~l~~a~~~lk~gG~ih~~~~~~e~~~-~~~~~e~i~~~~~~~g 248 (278)
T 3k6r_A 190 ENIADRILMGYVVRTH--------------------EFIPKALSIAKDGAIIHYHNTVPEKLM-PREPFETFKRITKEYG 248 (278)
T ss_dssp CSCEEEEEECCCSSGG--------------------GGHHHHHHHEEEEEEEEEEEEEEGGGT-TTTTHHHHHHHHHHTT
T ss_pred ccCCCEEEECCCCcHH--------------------HHHHHHHHHcCCCCEEEEEeeeccccc-chhHHHHHHHHHHHcC
Confidence 4679999999997431 256678889999999987432 2221 2232 456788888
Q ss_pred CEEE
Q 041136 170 LVLK 173 (214)
Q Consensus 170 l~l~ 173 (214)
+.+.
T Consensus 249 ~~v~ 252 (278)
T 3k6r_A 249 YDVE 252 (278)
T ss_dssp CEEE
T ss_pred CcEE
Confidence 8653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00014 Score=64.03 Aligned_cols=114 Identities=24% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-||=|.=.++..|++... ... .|+.|..+...+ .+.+|+.... ..+.+ +..|+... ...+
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~-~~~--v~~vD~s~~~l~---~a~~~~~~~~-~~~~~-~~~d~~~~------~~~~ 261 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSP-KIR--LTLCDVSAPAVE---ASRATLAANG-VEGEV-FASNVFSE------VKGR 261 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCT-TCB--CEEEESBHHHHH---HHHHHHHHTT-CCCEE-EECSTTTT------CCSC
T ss_pred CCCeEEEecCccCHHHHHHHHHCC-CCE--EEEEECCHHHHH---HHHHHHHHhC-CCCEE-EEcccccc------ccCC
Confidence 456899999666666667887752 234 455665444332 3566665432 22344 44455432 2467
Q ss_pred ccEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC
Q 041136 98 FDVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN 157 (214)
Q Consensus 98 FD~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~ 157 (214)
||.|+.|.|.. |. ..+......+++.+..+|++||.+.|......||.
T Consensus 262 fD~Iv~~~~~~~g~------------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 310 (343)
T 2pjd_A 262 FDMIISNPPFHDGM------------QTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (343)
T ss_dssp EEEEEECCCCCSSS------------HHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHH
T ss_pred eeEEEECCCcccCc------------cCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcH
Confidence 99999999965 42 23456788999999999999999988866655553
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0012 Score=56.70 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++.++ .. .|+.|..++..+ .+.+++......+...+...|+.++.
T Consensus 87 ~~~~~~~vLDiGcG~G~~~~~la~~~~--~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~------ 153 (318)
T 2fk8_A 87 DLKPGMTLLDIGCGWGTTMRRAVERFD--VN--VIGLTLSKNQHA---RCEQVLASIDTNRSRQVLLQGWEDFA------ 153 (318)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHC--CE--EEEEESCHHHHH---HHHHHHHTSCCSSCEEEEESCGGGCC------
T ss_pred CCCCcCEEEEEcccchHHHHHHHHHCC--CE--EEEEECCHHHHH---HHHHHHHhcCCCCceEEEECChHHCC------
Confidence 456788999999877777888998874 34 455564333321 24444433211122344556777652
Q ss_pred CCcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..||.|+.+.. |++. .-+..+++.+..+|+|||.+.|+.
T Consensus 154 -~~fD~v~~~~~l~~~~~----------------~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGH----------------ENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp -CCCSEEEEESCGGGTCG----------------GGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -CCcCEEEEeChHHhcCH----------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 57999998853 3331 124567888899999999987764
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00034 Score=53.28 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=78.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----C
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH----P 91 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~----~ 91 (214)
..+..+||-+|-|.=.++..|++.++....++++-.+. +.+ . .++.+ ...|+.++... .
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~-~------------~~~~~-~~~d~~~~~~~~~~~~ 82 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDP-I------------VGVDF-LQGDFRDELVMKALLE 82 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCC-C------------TTEEE-EESCTTSHHHHHHHHH
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---ccc-c------------CcEEE-EEcccccchhhhhhhc
Confidence 56778999999877677777998886545677765554 221 1 23333 44576654200 0
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHh
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADK 167 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~ 167 (214)
.+...+||.|+.|.|-..... .. .. ......++..+++.+..+|+++|.+.++..... ....+......
T Consensus 83 ~~~~~~~D~i~~~~~~~~~~~--~~--~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~~~~ 151 (180)
T 1ej0_A 83 RVGDSKVQVVMSDMAPNMSGT--PA--VD-IPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE--GFDEYLREIRS 151 (180)
T ss_dssp HHTTCCEEEEEECCCCCCCSC--HH--HH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST--THHHHHHHHHH
T ss_pred cCCCCceeEEEECCCccccCC--Cc--cc-hHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC--cHHHHHHHHHH
Confidence 033468999999998543311 11 11 123455678999999999999999988755433 23334444443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0019 Score=53.84 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-||=|.=.++..|++... +.. .++.|..+...+ .+.+++....-.+ ..+...|+.++. +.
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~--v~~vD~s~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~----~~ 102 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNP-DAE--ITSIDISPESLE---KARENTEKNGIKN-VKFLQANIFSLP----FE 102 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCT-TSE--EEEEESCHHHHH---HHHHHHHHTTCCS-EEEEECCGGGCC----SC
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCC-CCE--EEEEECCHHHHH---HHHHHHHHcCCCC-cEEEEcccccCC----CC
Confidence 456889999999777777888888753 334 455665444332 3555554432222 445556777654 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC----------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD---------------------- 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~---------------------- 152 (214)
..+||.|+.+..-.-... ...+++.+..+|+|||.+.++..+
T Consensus 103 ~~~fD~v~~~~~l~~~~~----------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHLQS----------------PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR 166 (276)
T ss_dssp TTCEEEEEEESCGGGCSC----------------HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH
T ss_pred CCCeeEEEEechhhhcCC----------------HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH
Confidence 578999999875432210 126778888999999999886421
Q ss_pred ------CCCCCcccHhhHHHhcCCEEEEEecC
Q 041136 153 ------DHPYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 153 ------~~Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
+.|+..-.+..+.+++||...+..++
T Consensus 167 ~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 167 VQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp HHHHTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred HHHhcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 11222334667888999998776544
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00061 Score=54.53 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=82.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + ...+ ++.|..++..+ .+.+|+......++. +..-|+.+. ...
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v--~~vD~s~~~~~---~a~~~~~~~~~~~v~-~~~~d~~~~------~~~ 124 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHKL-G-AKSV--LATDISDESMT---AAEENAALNGIYDIA-LQKTSLLAD------VDG 124 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHT-T-CSEE--EEEESCHHHHH---HHHHHHHHTTCCCCE-EEESSTTTT------CCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHC-C-CCEE--EEEECCHHHHH---HHHHHHHHcCCCceE-EEecccccc------CCC
Confidence 46789999997766677667763 2 2244 45564444332 466666655433433 445566542 236
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
+||.|+.|.|. ..+..+++.+..+|+++|.+.++-.. +.+...+..+..++|+.+.+..
T Consensus 125 ~fD~i~~~~~~-------------------~~~~~~l~~~~~~L~~gG~l~~~~~~--~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 125 KFDLIVANILA-------------------EILLDLIPQLDSHLNEDGQVIFSGID--YLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp CEEEEEEESCH-------------------HHHHHHGGGSGGGEEEEEEEEEEEEE--GGGHHHHHHHHHHTTEEEEEEE
T ss_pred CceEEEECCcH-------------------HHHHHHHHHHHHhcCCCCEEEEEecC--cccHHHHHHHHHHcCCceEEee
Confidence 89999999753 12478899999999999999875221 1245567788899999987754
Q ss_pred c
Q 041136 177 E 177 (214)
Q Consensus 177 ~ 177 (214)
.
T Consensus 184 ~ 184 (205)
T 3grz_A 184 R 184 (205)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0023 Score=54.09 Aligned_cols=138 Identities=13% Similarity=0.038 Sum_probs=86.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.++ .. .|+.|..++..+ .+.+++.........-+...|+.++. +.
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~ 147 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKFG--VS--IDCLNIAPVQNK---RNEEYNNQAGLADNITVKYGSFLEIP----CE 147 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CE--EEEEESCHHHHH---HHHHHHHHHTCTTTEEEEECCTTSCS----SC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhC--CE--EEEEeCCHHHHH---HHHHHHHhcCCCcceEEEEcCcccCC----CC
Confidence 567889999999887777888998874 34 455564343331 34455444322122334455777653 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC---CCC----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD---DHP---------------- 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~---~~P---------------- 155 (214)
..+||.|+.+..-.-.. + ...+++.+..+|+|||.+.++-.. ..+
T Consensus 148 ~~~fD~v~~~~~l~~~~-------------~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (297)
T 2o57_A 148 DNSYDFIWSQDAFLHSP-------------D---KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDM 211 (297)
T ss_dssp TTCEEEEEEESCGGGCS-------------C---HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSC
T ss_pred CCCEeEEEecchhhhcC-------------C---HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCC
Confidence 67899999885422110 1 356788889999999998776321 111
Q ss_pred CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
.+.-.+..+++++||.+.+..+..
T Consensus 212 ~~~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 212 GSLGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEECH
T ss_pred CCHHHHHHHHHHCCCeEEEEEECc
Confidence 122235678889999998876544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=54.32 Aligned_cols=135 Identities=10% Similarity=0.053 Sum_probs=85.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+-..+.+||-||=|.=.++..|++... .+ .|+.|..++..+ .+.+++. .....+...|+.++. +.
T Consensus 41 ~~~~~~~vLD~GcG~G~~~~~l~~~~~--~~--v~~vD~s~~~~~---~a~~~~~----~~~~~~~~~d~~~~~----~~ 105 (253)
T 3g5l_A 41 PDFNQKTVLDLGCGFGWHCIYAAEHGA--KK--VLGIDLSERMLT---EAKRKTT----SPVVCYEQKAIEDIA----IE 105 (253)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTC--SE--EEEEESCHHHHH---HHHHHCC----CTTEEEEECCGGGCC----CC
T ss_pred hccCCCEEEEECCCCCHHHHHHHHcCC--CE--EEEEECCHHHHH---HHHHhhc----cCCeEEEEcchhhCC----CC
Confidence 344788999999777677777887632 24 455564333321 1332222 234455666777664 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC----------------CC----
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD----------------DH---- 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~----------------~~---- 154 (214)
..+||.|+.+....... -+..+++.+..+|++||.+.|+... +.
T Consensus 106 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
T 3g5l_A 106 PDAYNVVLSSLALHYIA----------------SFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHW 169 (253)
T ss_dssp TTCEEEEEEESCGGGCS----------------CHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEE
T ss_pred CCCeEEEEEchhhhhhh----------------hHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEE
Confidence 57899999987432211 1346788889999999999887321 00
Q ss_pred ------------------C-----CCcccHhhHHHhcCCEEEEEecCCC
Q 041136 155 ------------------P-----YNQWNVMGLADKLGLVLKEKVEFLK 180 (214)
Q Consensus 155 ------------------P-----y~~W~i~~lA~~~gl~l~~~~~F~~ 180 (214)
+ ++.-.+..+.+++||.+.+.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~ 218 (253)
T 3g5l_A 170 PVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEP 218 (253)
T ss_dssp EECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCC
T ss_pred EeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCC
Confidence 0 0233477899999999998765443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0018 Score=52.01 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=68.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++... ++ |+.|..++..+ .+.++++... .++.+ ...|+.++. +...
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v--~~vD~s~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~----~~~~ 102 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF---EV--VGVDISEDMIR---KAREYAKSRE-SNVEF-IVGDARKLS----FEDK 102 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC---EE--EEEESCHHHHH---HHHHHHHHTT-CCCEE-EECCTTSCC----SCTT
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC---EE--EEEECCHHHHH---HHHHHHHhcC-CCceE-EECchhcCC----CCCC
Confidence 4478999999777677777887642 44 45564444432 3555554433 34444 445776653 3456
Q ss_pred cccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+||.|+.+.| +... .-...+++.+..+|++||.+.+...
T Consensus 103 ~~D~v~~~~~~~~~~~----------------~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 103 TFDYVIFIDSIVHFEP----------------LELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CEEEEEEESCGGGCCH----------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEEEcCchHhCCH----------------HHHHHHHHHHHHHcCCCcEEEEEec
Confidence 8999999988 4321 1245678889999999999987743
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0015 Score=52.13 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=81.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + .++ |+.|..++.. +..++.+...+...|+.++...+.....
T Consensus 51 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~vD~s~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (227)
T 3e8s_A 51 RQPERVLDLGCGEGWLLRALADR-G--IEA--VGVDGDRTLV----------DAARAAGAGEVHLASYAQLAEAKVPVGK 115 (227)
T ss_dssp TCCSEEEEETCTTCHHHHHHHTT-T--CEE--EEEESCHHHH----------HHHHHTCSSCEEECCHHHHHTTCSCCCC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHC-C--CEE--EEEcCCHHHH----------HHHHHhcccccchhhHHhhcccccccCC
Confidence 34589999997766677778776 2 344 5556433332 2222224444555677776444334456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC----------------------
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH---------------------- 154 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~---------------------- 154 (214)
+||.|+.++... .. + ...+++.+..+|++||.+.|+.....
T Consensus 116 ~fD~v~~~~~l~-~~----~------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (227)
T 3e8s_A 116 DYDLICANFALL-HQ----D------------IIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGD 178 (227)
T ss_dssp CEEEEEEESCCC-SS----C------------CHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSC
T ss_pred CccEEEECchhh-hh----h------------HHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccC
Confidence 799999998776 21 1 12567788899999999988743110
Q ss_pred --C-----CCcccHhhHHHhcCCEEEEEec
Q 041136 155 --P-----YNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 --P-----y~~W~i~~lA~~~gl~l~~~~~ 177 (214)
+ ++.-.+..+.+++||.+.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 179 WQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp CCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred cccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 0 1233467788999999988654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0013 Score=55.05 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=67.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-||=|.=.++..|++. + ..+ .|+.|..++..+ .+.+++..........+...|+.++.- ....
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~ 132 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-G-IGE--YYGVDIAEVSIN---DARVRARNMKRRFKVFFRAQDSYGRHM---DLGK 132 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-T-CSE--EEEEESCHHHHH---HHHHHHHTSCCSSEEEEEESCTTTSCC---CCSS
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-C-CCE--EEEEECCHHHHH---HHHHHHHhcCCCccEEEEECCcccccc---CCCC
Confidence 57789999996655555557765 2 224 455664443331 244444322110113445567777631 1457
Q ss_pred cccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
.||.|+.++. |... .+..-+..+++.+..+|+|||.+.++..
T Consensus 133 ~fD~v~~~~~l~~~~-------------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 133 EFDVISSQFSFHYAF-------------STSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp CEEEEEEESCGGGGG-------------SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CcCEEEECchhhhhc-------------CCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 8999999864 3211 1233467789999999999999988754
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0012 Score=53.45 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
+..+||-||=|.=.++..|++. + .. .|+.|..+++.+ .+.+++.... .++. +...|+.++. +. ..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~--~~--~~~~D~s~~~~~---~a~~~~~~~~-~~~~-~~~~d~~~~~----~~-~~ 101 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-F--KN--TWAVDLSQEMLS---EAENKFRSQG-LKPR-LACQDISNLN----IN-RK 101 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-S--SE--EEEECSCHHHHH---HHHHHHHHTT-CCCE-EECCCGGGCC----CS-CC
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-C--Cc--EEEEECCHHHHH---HHHHHHhhcC-CCeE-EEecccccCC----cc-CC
Confidence 6789999997776677778775 2 23 566675444432 3444443321 1344 3455777654 22 67
Q ss_pred ccEEEEcC---CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 98 FDVIIFNF---PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 98 FD~IiFNF---PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
||.|+.++ +|+.. ..-+..+++.+..+|++||.+.++.
T Consensus 102 fD~v~~~~~~l~~~~~---------------~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 102 FDLITCCLDSTNYIID---------------SDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp EEEEEECTTGGGGCCS---------------HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ceEEEEcCccccccCC---------------HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999976 55532 2245678889999999999998754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0016 Score=52.93 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=67.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..+..+||-||=|.=.++..|++.+. +.+ .|+.|..++..+ .+.+++ ...+...+...|+.++.. .
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~--v~~vD~s~~~~~---~a~~~~---~~~~~~~~~~~d~~~~~~----~- 107 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYP-EAT--FTLVDMSEKMLE---IAKNRF---RGNLKVKYIEADYSKYDF----E- 107 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCT-TCE--EEEEESCHHHHH---HHHHHT---CSCTTEEEEESCTTTCCC----C-
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCC-CCe--EEEEECCHHHHH---HHHHhh---ccCCCEEEEeCchhccCC----C-
Confidence 45778999999777777777888873 334 455664333331 233332 223334455667777642 2
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..||.|+.+.+-.-. ...-...+++.+..+|+|||.+.++-
T Consensus 108 ~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 108 EKYDMVVSALSIHHL--------------EDEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp SCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEeCccccC--------------CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999999754322 11223467788899999999997764
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00089 Score=59.23 Aligned_cols=142 Identities=13% Similarity=0.008 Sum_probs=84.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+.+||-+|=|.=.|+..+++. + . -+|+.|..+...+ .+.+|++.+.-.+ -..+..-|+.++.........
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~-g--a--~V~~VD~s~~al~---~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~ 224 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA-G--A--EVTHVDASKKAIG---WAKENQVLAGLEQAPIRWICEDAMKFIQREERRGS 224 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-T--C--EEEEECSCHHHHH---HHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTC
T ss_pred CCCcEEEcccccCHHHHHHHHc-C--C--EEEEEECCHHHHH---HHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCC
Confidence 5679999986655566667763 2 2 5677786555442 4778887764333 134556677764211000146
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCc---ccH-hhHHHhcCCEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQ---WNV-MGLADKLGLVL 172 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~---W~i-~~lA~~~gl~l 172 (214)
+||.||.|.|..+.... .+. ......+..++..|..+|+++|.+.++.......+. .++ .+.+++.|..+
T Consensus 225 ~fD~Ii~dPP~~~~~~~-~~~-----~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 225 TYDIILTDPPKFGRGTH-GEV-----WQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp CBSEEEECCCSEEECTT-CCE-----EEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred CceEEEECCccccCCch-HHH-----HHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 79999999997654211 100 112445678899999999999997666443332221 223 33555778877
Q ss_pred E
Q 041136 173 K 173 (214)
Q Consensus 173 ~ 173 (214)
.
T Consensus 299 ~ 299 (332)
T 2igt_A 299 A 299 (332)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00057 Score=54.37 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=68.4
Q ss_pred eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccE
Q 041136 21 RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDV 100 (214)
Q Consensus 21 ~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~ 100 (214)
+||-||=|.=.++..|++.. ....|+.|..++..+ .+.+++......+...+...|+.++. +...+||.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~----~~~v~~~D~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~ 114 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQS----DFSIRALDFSKHMNE---IALKNIADANLNDRIQIVQGDVHNIP----IEDNYADL 114 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHS----EEEEEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECBTTBCS----SCTTCEEE
T ss_pred EEEEECCCCCHHHHHHHHcC----CCeEEEEECCHHHHH---HHHHHHHhccccCceEEEEcCHHHCC----CCcccccE
Confidence 99999977777787788872 355667775444432 35556555433233455667887764 45678999
Q ss_pred EEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 101 IIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 101 IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
|+.+....-.. -...+++.+..+|++||.+.|+
T Consensus 115 v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 115 IVSRGSVFFWE----------------DVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp EEEESCGGGCS----------------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECchHhhcc----------------CHHHHHHHHHHhCCCCCEEEEE
Confidence 99987432211 1234778888999999999887
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00095 Score=54.74 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=82.9
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++.. ...+ |+.|..+...+ .+.+++... ....+...|+.++. +.
T Consensus 90 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v--~~vD~s~~~~~---~a~~~~~~~---~~~~~~~~d~~~~~----~~ 155 (254)
T 1xtp_A 90 PGHGTSRALDCGAGIGRITKNLLTKL--YATT--DLLEPVKHMLE---EAKRELAGM---PVGKFILASMETAT----LP 155 (254)
T ss_dssp TTCCCSEEEEETCTTTHHHHHTHHHH--CSEE--EEEESCHHHHH---HHHHHTTTS---SEEEEEESCGGGCC----CC
T ss_pred cccCCCEEEEECCCcCHHHHHHHHhh--cCEE--EEEeCCHHHHH---HHHHHhccC---CceEEEEccHHHCC----CC
Confidence 44578899999977766777788775 2234 45564333321 233333222 22334455777653 44
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC--CC-----------CCcccH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD--HP-----------YNQWNV 161 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~--~P-----------y~~W~i 161 (214)
...||.|+.++.-.-. ...-+..+++.+..+|++||.+.|+-... .+ ++.-.+
T Consensus 156 ~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
T 1xtp_A 156 PNTYDLIVIQWTAIYL--------------TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221 (254)
T ss_dssp SSCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred CCCeEEEEEcchhhhC--------------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHH
Confidence 5689999998752211 11235678888999999999997774211 10 122347
Q ss_pred hhHHHhcCCEEEEEec
Q 041136 162 MGLADKLGLVLKEKVE 177 (214)
Q Consensus 162 ~~lA~~~gl~l~~~~~ 177 (214)
..+.+++||.+.+...
T Consensus 222 ~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 222 KRLFNESGVRVVKEAF 237 (254)
T ss_dssp HHHHHHHTCCEEEEEE
T ss_pred HHHHHHCCCEEEEeee
Confidence 7888999999887643
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0011 Score=55.81 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=84.0
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKF 98 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~F 98 (214)
..+||-||=|.=.++..|++. + ..+ |+.|..++..+ .+.++++...-....-+...|+.++.. +...+|
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~-~--~~v--~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~~f 137 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAER-G--HQV--ILCDLSAQMID---RAKQAAEAKGVSDNMQFIHCAAQDVAS---HLETPV 137 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHHHC-CCGGGEEEEESCGGGTGG---GCSSCE
T ss_pred CCEEEEeCCcchHHHHHHHHC-C--CEE--EEEECCHHHHH---HHHHHHHhcCCCcceEEEEcCHHHhhh---hcCCCc
Confidence 579999996666666668776 2 344 55564343331 244444332110124456668877653 345789
Q ss_pred cEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-------------------C------
Q 041136 99 DVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-------------------D------ 153 (214)
Q Consensus 99 D~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-------------------~------ 153 (214)
|.|+.+....-.. + ...+++.+..+|+|||.+.|+... +
T Consensus 138 D~v~~~~~l~~~~-------------~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (285)
T 4htf_A 138 DLILFHAVLEWVA-------------D---PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKK 201 (285)
T ss_dssp EEEEEESCGGGCS-------------C---HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC--
T ss_pred eEEEECchhhccc-------------C---HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhcccccc
Confidence 9999986543221 0 145788899999999999876531 0
Q ss_pred ------CCCCcccHhhHHHhcCCEEEEEecCC
Q 041136 154 ------HPYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 154 ------~Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
.+++.-.+..+.+++||.+.+...+.
T Consensus 202 ~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 202 RTLSPDYPRDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp --CCCSCCBCHHHHHHHHHHTTCEEEEEEEES
T ss_pred ccCCCCCCCCHHHHHHHHHHCCCceeeeeeEE
Confidence 12334468889999999998876653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0022 Score=53.15 Aligned_cols=135 Identities=13% Similarity=0.240 Sum_probs=82.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++... ..++.|..+++.+ .+.++++.....+ ..+...|+.++. +.
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-----~v~gvD~s~~~l~---~a~~~~~~~~~~~-v~~~~~d~~~l~----~~ 100 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPFVK-----KVVAFDLTEDILK---VARAFIEGNGHQQ-VEYVQGDAEQMP----FT 100 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSS-----EEEEEESCHHHHH---HHHHHHHHTTCCS-EEEEECCC-CCC----SC
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHhCC-----EEEEEeCCHHHHH---HHHHHHHhcCCCc-eEEEEecHHhCC----CC
Confidence 446788999999666566666877642 4566775444432 3444443321112 334455777653 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC--C-------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD--D------------------- 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~--~------------------- 153 (214)
...||.|+.++.-.-.. + ...+++.+..+|+|||.+.++-.. .
T Consensus 101 ~~~fD~V~~~~~l~~~~----d------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFP----N------------PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSH 164 (260)
T ss_dssp TTCEEEEEEESCGGGCS----C------------HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTC
T ss_pred CCCEEEEEEhhhhHhcC----C------------HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccc
Confidence 67899999986432211 0 136788889999999999775211 1
Q ss_pred -CCCCcccHhhHHHhcCCEEEEEecC
Q 041136 154 -HPYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 154 -~Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
..++.-.+..+.+++||.+.....+
T Consensus 165 ~~~~~~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 165 HRAWKKSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp CCCCBHHHHHHHHHHHTCEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 1123334667888999988765444
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00085 Score=60.34 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=89.1
Q ss_pred ccCC-CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCC
Q 041136 13 ISHY-TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRH 90 (214)
Q Consensus 13 ~~~~-~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~ 90 (214)
+..+ ..+.+||=+|=|.=.||+.+|+. + +..+ |+.|..++.. ..+.+|++.+.-.+ ...++.-||.+.-..
T Consensus 206 ~~~~~~~~~~VLDl~cGtG~~sl~la~~-g-a~~V--~~vD~s~~al---~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~ 278 (385)
T 2b78_A 206 LINGSAAGKTVLNLFSYTAAFSVAAAMG-G-AMAT--TSVDLAKRSR---ALSLAHFEANHLDMANHQLVVMDVFDYFKY 278 (385)
T ss_dssp HHHTTTBTCEEEEETCTTTHHHHHHHHT-T-BSEE--EEEESCTTHH---HHHHHHHHHTTCCCTTEEEEESCHHHHHHH
T ss_pred HHHHhcCCCeEEEEeeccCHHHHHHHHC-C-CCEE--EEEECCHHHH---HHHHHHHHHcCCCccceEEEECCHHHHHHH
Confidence 3344 67889999985555555557764 2 2244 4555433333 14777877654321 234555577652110
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC--CCcccHh-hHHHh
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP--YNQWNVM-GLADK 167 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P--y~~W~i~-~lA~~ 167 (214)
..-.+.+||.||.|.|-.+...+... .-.+.+..++..|..+|+|+|.+.++.+.... -..|++. ..|.+
T Consensus 279 ~~~~~~~fD~Ii~DPP~~~~~~~~~~-------~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~ 351 (385)
T 2b78_A 279 ARRHHLTYDIIIIDPPSFARNKKEVF-------SVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGK 351 (385)
T ss_dssp HHHTTCCEEEEEECCCCC-----CCC-------CHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCCCccEEEECCCCCCCChhhHH-------HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHH
Confidence 00124579999999999753211111 12345667788899999999999888765442 1234444 45667
Q ss_pred cCCEEEEEecCCCCCCC
Q 041136 168 LGLVLKEKVEFLKQDFP 184 (214)
Q Consensus 168 ~gl~l~~~~~F~~~~yP 184 (214)
.|..+.+ ..-.+.++|
T Consensus 352 ~g~~~~~-~~~~~~D~p 367 (385)
T 2b78_A 352 QKHTYLD-LQQLPSDFA 367 (385)
T ss_dssp CCCEEEE-EECCCTTSC
T ss_pred cCCcEEE-eCCCCCCCC
Confidence 7877444 333444555
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00065 Score=55.85 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=82.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++.. ...+ |+.|..++..+ .+.+++..... ....+...|+..+. +...
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v--~~vD~s~~~~~---~a~~~~~~~~~-~~~~~~~~d~~~~~----~~~~ 145 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL--FREV--DMVDITEDFLV---QAKTYLGEEGK-RVRNYFCCGLQDFT----PEPD 145 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEE--EEEESCHHHHH---HHHHHTGGGGG-GEEEEEECCGGGCC----CCSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CCEE--EEEeCCHHHHH---HHHHHhhhcCC-ceEEEEEcChhhcC----CCCC
Confidence 357899999977777777777765 2344 45564333331 24444333211 12335566777654 3356
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-------C-----CCcccHhhH
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-------P-----YNQWNVMGL 164 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-------P-----y~~W~i~~l 164 (214)
+||.|+.+..-.-. ....+..+++.+..+|++||.+.|+-.... . ++.-.+..+
T Consensus 146 ~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (241)
T 2ex4_A 146 SYDVIWIQWVIGHL--------------TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRI 211 (241)
T ss_dssp CEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHH
T ss_pred CEEEEEEcchhhhC--------------CHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHH
Confidence 89999998432111 112357788999999999999977532111 0 123356778
Q ss_pred HHhcCCEEEEEecC
Q 041136 165 ADKLGLVLKEKVEF 178 (214)
Q Consensus 165 A~~~gl~l~~~~~F 178 (214)
.+++||.+.+....
T Consensus 212 l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 212 ICSAGLSLLAEERQ 225 (241)
T ss_dssp HHHTTCCEEEEEEC
T ss_pred HHHcCCeEEEeeec
Confidence 88999999886544
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.015 Score=49.14 Aligned_cols=138 Identities=7% Similarity=0.085 Sum_probs=81.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~~~ 93 (214)
+.+++++||-+|=|.=.++..||+..++...|+|.=+.. ...+ .. ++..+. .++.. ..-||+.......+
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~--~~l~---~l---~~~a~~r~nv~~-i~~Da~~~~~~~~~ 143 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSP--RVVR---EL---LLVAQRRPNIFP-LLADARFPQSYKSV 143 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCH--HHHH---HH---HHHHHHCTTEEE-EECCTTCGGGTTTT
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcH--HHHH---HH---HHHhhhcCCeEE-EEcccccchhhhcc
Confidence 467899999999665556666888887555666654433 2111 01 111112 34444 44688876543222
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC------CCC-cccHhhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------PYN-QWNVMGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------Py~-~W~i~~lA~ 166 (214)
..+||+|+.|.|+.. + .++ +...+..+|++||.+.++++.+. |.. .=+++...+
T Consensus 144 -~~~~D~I~~d~a~~~-------~--------~~i---l~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~ 204 (232)
T 3id6_C 144 -VENVDVLYVDIAQPD-------Q--------TDI---AIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLE 204 (232)
T ss_dssp -CCCEEEEEECCCCTT-------H--------HHH---HHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHH
T ss_pred -ccceEEEEecCCChh-------H--------HHH---HHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHH
Confidence 357999999988611 0 111 23456778999999998875432 322 223445556
Q ss_pred hcCCEEEEEecCCC
Q 041136 167 KLGLVLKEKVEFLK 180 (214)
Q Consensus 167 ~~gl~l~~~~~F~~ 180 (214)
++||.+.+.....|
T Consensus 205 ~~gf~~~~~~~l~p 218 (232)
T 3id6_C 205 NSNFETIQIINLDP 218 (232)
T ss_dssp HTTEEEEEEEECTT
T ss_pred HCCCEEEEEeccCC
Confidence 77999988765543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0053 Score=53.73 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=88.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++.+|+.|. ++..+ .+.+++....-.+..-+...|+.+ . +.
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~--~---~~ 246 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAP---HLRGTLVEL-AGPAE---RARRRFADAGLADRVTVAEGDFFK--P---LP 246 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHH---HHHHHHHHTTCTTTEEEEECCTTS--C---CS
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCC---CCEEEEEeC-HHHHH---HHHHHHHhcCCCCceEEEeCCCCC--c---CC
Confidence 467789999999777778888998873 345667777 55442 466666543222223344556653 1 11
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec-----C-----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR-----D----------------- 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~-----~----------------- 152 (214)
..||.|+.+..-.-.. ..-...+++.+..+|++||.+.|.-. +
T Consensus 247 -~~~D~v~~~~vl~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~ 311 (374)
T 1qzz_A 247 -VTADVVLLSFVLLNWS--------------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTF 311 (374)
T ss_dssp -CCEEEEEEESCGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHH
T ss_pred -CCCCEEEEeccccCCC--------------HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHh
Confidence 2399999987543221 11234677788899999999876532 1
Q ss_pred --CCCCCcccHhhHHHhcCCEEEEEecCCCCCCC
Q 041136 153 --DHPYNQWNVMGLADKLGLVLKEKVEFLKQDFP 184 (214)
Q Consensus 153 --~~Py~~W~i~~lA~~~gl~l~~~~~F~~~~yP 184 (214)
+..++.=.+..+.+++||...+..+.....+|
T Consensus 312 ~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~ 345 (374)
T 1qzz_A 312 MGGRVRTRDEVVDLAGSAGLALASERTSGSTTLP 345 (374)
T ss_dssp HSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCS
T ss_pred CCCcCCCHHHHHHHHHHCCCceEEEEECCCCccc
Confidence 11123334667888899999887776543333
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0013 Score=54.40 Aligned_cols=133 Identities=14% Similarity=0.027 Sum_probs=82.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|+.... +. ..|+.|..++..+ .+.+|++.+.-.++.++. -|+.++...+. ...
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~--~v~~vD~s~~~~~---~a~~~~~~~~~~~v~~~~-~d~~~~~~~~~-~~~ 140 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFP-HL--HVTIVDSLNKRIT---FLEKLSEALQLENTTFCH-DRAETFGQRKD-VRE 140 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCT-TC--EEEEEESCHHHHH---HHHHHHHHHTCSSEEEEE-SCHHHHTTCTT-TTT
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCC-CC--EEEEEeCCHHHHH---HHHHHHHHcCCCCEEEEe-ccHHHhccccc-ccC
Confidence 5778999999554444555666442 23 4566675554432 466777766433455544 47776642111 146
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC--cccHhhHHHhcCCEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN--QWNVMGLADKLGLVLKE 174 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~--~W~i~~lA~~~gl~l~~ 174 (214)
+||.|+.+.. . -+..+++.+..+|++||.+.+.. |.... .-.+....+..|+.+.+
T Consensus 141 ~fD~V~~~~~--~------------------~~~~~l~~~~~~LkpgG~l~~~~--g~~~~~~~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 141 SYDIVTARAV--A------------------RLSVLSELCLPLVKKNGLFVALK--AASAEEELNAGKKAITTLGGELEN 198 (240)
T ss_dssp CEEEEEEECC--S------------------CHHHHHHHHGGGEEEEEEEEEEE--CC-CHHHHHHHHHHHHHTTEEEEE
T ss_pred CccEEEEecc--C------------------CHHHHHHHHHHhcCCCCEEEEEe--CCCchHHHHHHHHHHHHcCCeEeE
Confidence 7999998651 1 14577888999999999997762 22211 22345566778998888
Q ss_pred EecCC
Q 041136 175 KVEFL 179 (214)
Q Consensus 175 ~~~F~ 179 (214)
...|.
T Consensus 199 ~~~~~ 203 (240)
T 1xdz_A 199 IHSFK 203 (240)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76664
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0014 Score=52.29 Aligned_cols=125 Identities=16% Similarity=0.058 Sum_probs=79.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
++.+||-+|-|.=.++..|++.++ .. ..|+.|..++..+ .+..|+..+...+ ..+...|+.++. ...+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~--~v~~vD~s~~~~~---~a~~~~~~~~~~~-v~~~~~d~~~~~-----~~~~ 132 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRP-EA--HFTLLDSLGKRVR---FLRQVQHELKLEN-IEPVQSRVEEFP-----SEPP 132 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-TS--EEEEEESCHHHHH---HHHHHHHHTTCSS-EEEEECCTTTSC-----CCSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCC-CC--EEEEEeCCHHHHH---HHHHHHHHcCCCC-eEEEecchhhCC-----ccCC
Confidence 478999999776666777888763 23 4556665444331 3666666554333 445566777653 2357
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEec
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
||.|+.|.-+ -+..++..+..+|++||.+.+..-. ...-.+..+.. |+.+.+..+
T Consensus 133 ~D~i~~~~~~--------------------~~~~~l~~~~~~L~~gG~l~~~~~~---~~~~~~~~~~~--g~~~~~~~~ 187 (207)
T 1jsx_A 133 FDGVISRAFA--------------------SLNDMVSWCHHLPGEQGRFYALKGQ---MPEDEIALLPE--EYQVESVVK 187 (207)
T ss_dssp EEEEECSCSS--------------------SHHHHHHHHTTSEEEEEEEEEEESS---CCHHHHHTSCT--TEEEEEEEE
T ss_pred cCEEEEeccC--------------------CHHHHHHHHHHhcCCCcEEEEEeCC---CchHHHHHHhc--CCceeeeee
Confidence 9999986310 0347788899999999999887322 23334444443 888877665
Q ss_pred CC
Q 041136 178 FL 179 (214)
Q Consensus 178 F~ 179 (214)
|.
T Consensus 188 ~~ 189 (207)
T 1jsx_A 188 LQ 189 (207)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0065 Score=53.33 Aligned_cols=140 Identities=16% Similarity=0.102 Sum_probs=86.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+.+||=+|=|.=+++..+|...++...++ +.|..+...+ .|..|++...-. ...+..-|++++.. .
T Consensus 200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~--g~Di~~~~i~---~a~~n~~~~g~~-~i~~~~~D~~~~~~----~ 269 (354)
T 3tma_A 200 DARPGMRVLDPFTGSGTIALEAASTLGPTSPVY--AGDLDEKRLG---LAREAALASGLS-WIRFLRADARHLPR----F 269 (354)
T ss_dssp TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEE--EEESCHHHHH---HHHHHHHHTTCT-TCEEEECCGGGGGG----T
T ss_pred CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEE--EEECCHHHHH---HHHHHHHHcCCC-ceEEEeCChhhCcc----c
Confidence 456788999887555455555776663334554 5564444432 467776654322 24455668888753 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
...||.||.|.|. |...+ + ......+...+++.+.++|++||.+.+... +...+..+.+ .|+...+
T Consensus 270 ~~~~D~Ii~npPy-g~r~~--~-----~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~-----~~~~~~~~~~-~g~~~~~ 335 (354)
T 3tma_A 270 FPEVDRILANPPH-GLRLG--R-----KEGLFHLYWDFLRGALALLPPGGRVALLTL-----RPALLKRALP-PGFALRH 335 (354)
T ss_dssp CCCCSEEEECCCS-CC-----------CHHHHHHHHHHHHHHHHTSCTTCEEEEEES-----CHHHHHHHCC-TTEEEEE
T ss_pred cCCCCEEEECCCC-cCccC--C-----cccHHHHHHHHHHHHHHhcCCCcEEEEEeC-----CHHHHHHHhh-cCcEEEE
Confidence 2458999999996 32111 0 022456778999999999999999977632 2222344455 8888877
Q ss_pred EecC
Q 041136 175 KVEF 178 (214)
Q Consensus 175 ~~~F 178 (214)
..+.
T Consensus 336 ~~~l 339 (354)
T 3tma_A 336 ARVV 339 (354)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6544
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0043 Score=55.22 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=86.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-------CCEEEEccccccCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-------GCLVLHGVNVHTMDR 89 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-------g~~Vl~~VDAt~L~~ 89 (214)
.++.+||-||=|.=.++..|++.+++...+ |+.|..++..+ .+.++++.+... ....+..-|+.++..
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v--~gvD~s~~~l~---~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~ 156 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKV--IGVDMLDNQLE---VARKYVEYHAEKFFGSPSRSNVRFLKGFIENLAT 156 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEE--EEEECCHHHHH---HHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGG
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEE--EEEECCHHHHH---HHHHHHHHhhhhcccccCCCceEEEEccHHHhhh
Confidence 567899999977767777799988654444 55564333332 366666655311 133444558877632
Q ss_pred C--CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-cCCC------------
Q 041136 90 H--PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-RDDH------------ 154 (214)
Q Consensus 90 ~--~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~~~~------------ 154 (214)
. ..+...+||.|+.|....-.. + ...+++.+..+|+|||.+.++- ....
T Consensus 157 ~~~~~~~~~~fD~V~~~~~l~~~~-------------d---~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 220 (383)
T 4fsd_A 157 AEPEGVPDSSVDIVISNCVCNLST-------------N---KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPIL 220 (383)
T ss_dssp CBSCCCCTTCEEEEEEESCGGGCS-------------C---HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHH
T ss_pred cccCCCCCCCEEEEEEccchhcCC-------------C---HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHH
Confidence 1 135567899999997654321 0 2467888999999999997752 2111
Q ss_pred -------CCCcccHhhHHHhcCCEEEE
Q 041136 155 -------PYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 155 -------Py~~W~i~~lA~~~gl~l~~ 174 (214)
++..-.+..+..++||...+
T Consensus 221 ~~~~~~~~~~~~~~~~ll~~aGF~~v~ 247 (383)
T 4fsd_A 221 YGECLGGALYLEDFRRLVAEAGFRDVR 247 (383)
T ss_dssp HHTTCTTCCBHHHHHHHHHHTTCCCEE
T ss_pred hhcccccCCCHHHHHHHHHHCCCceEE
Confidence 12234467788899997554
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0065 Score=52.53 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=86.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
++++..+||-||=|.=.++..|++.+. ++.+|.+|. +++.+ .+.+++....-.+-.-+..-|+. ...+
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~--~~~p--- 233 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHE---DLSGTVLDL-QGPAS---AAHRRFLDTGLSGRAQVVVGSFF--DPLP--- 233 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHH---HHHHHHHHTTCTTTEEEEECCTT--SCCC---
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCC---CCeEEEecC-HHHHH---HHHHhhhhcCcCcCeEEecCCCC--CCCC---
Confidence 456778999999777778888999874 345677788 55442 45555554321122334444554 1211
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---C----------------CCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---D----------------DHP 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~----------------~~P 155 (214)
. .||.|+...--.-.. .+-...+++.+..+|+|||.+.|.-. + +..
T Consensus 234 ~-~~D~v~~~~vlh~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~ 298 (332)
T 3i53_A 234 A-GAGGYVLSAVLHDWD--------------DLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKE 298 (332)
T ss_dssp C-SCSEEEEESCGGGSC--------------HHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCC
T ss_pred C-CCcEEEEehhhccCC--------------HHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCC
Confidence 1 699999876543221 12245567778889999999977521 1 112
Q ss_pred CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
++.=++..+.+++||...+..+..
T Consensus 299 ~t~~e~~~ll~~aGf~~~~~~~~~ 322 (332)
T 3i53_A 299 RSLAELGELAAQAGLAVRAAHPIS 322 (332)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEECS
T ss_pred CCHHHHHHHHHHCCCEEEEEEECC
Confidence 333446678888999998876553
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0055 Score=52.60 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=83.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+...+||-||=|.=.++..|++.+. . +-.|+.|.. .+.+ .+.+++....-.+..-+...|+.+.. +..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~--~~~~~~D~~-~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~- 231 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNP-N--AEIFGVDWA-SVLE---VAKENARIQGVASRYHTIAGSAFEVD----YGN- 231 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCT-T--CEEEEEECH-HHHH---HHHHHHHHHTCGGGEEEEESCTTTSC----CCS-
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC-C--CeEEEEecH-HHHH---HHHHHHHhcCCCcceEEEecccccCC----CCC-
Confidence 7789999999777777888998873 2 345566655 4442 46666655432222334445666542 222
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC------------------------
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD------------------------ 152 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~------------------------ 152 (214)
.||.|+.+..-.... ..-...+++.+..+|++||.+.|.-..
T Consensus 232 ~~D~v~~~~~l~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (335)
T 2r3s_A 232 DYDLVLLPNFLHHFD--------------VATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPN 297 (335)
T ss_dssp CEEEEEEESCGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSS
T ss_pred CCcEEEEcchhccCC--------------HHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCC
Confidence 399999965433221 122446677888999999998765221
Q ss_pred CCCCCcccHhhHHHhcCCEEEEEecC
Q 041136 153 DHPYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 153 ~~Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
+..++.-++..+.+++||...+..+.
T Consensus 298 ~~~~t~~~~~~ll~~aGf~~~~~~~~ 323 (335)
T 2r3s_A 298 GDAYTFAEYESMFSNAGFSHSQLHSL 323 (335)
T ss_dssp CCCCCHHHHHHHHHHTTCSEEEEECC
T ss_pred CCcCCHHHHHHHHHHCCCCeeeEEEC
Confidence 11122334567788899998886554
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0039 Score=55.39 Aligned_cols=134 Identities=18% Similarity=0.148 Sum_probs=81.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-+|=|.=.|+.++++.++...++++.-+|....- .| .++. ++.-|+.... ...
T Consensus 38 ~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~-----~a---------~~~~-~~~~D~~~~~-----~~~ 97 (421)
T 2ih2_A 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD-----LP---------PWAE-GILADFLLWE-----PGE 97 (421)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC-----CC---------TTEE-EEESCGGGCC-----CSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHH-----hC---------CCCc-EEeCChhhcC-----ccC
Confidence 45679999998888888889988754457777666654321 11 2333 3445666542 236
Q ss_pred cccEEEEcCCCCCCCCC------CCcccHHHHHH-------hHHHHHHHHHHHHhccCCCCEEEEEecCCCCC--CcccH
Q 041136 97 KFDVIIFNFPHAGHSPP------LSEQDTNLIKR-------HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY--NQWNV 161 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~------~~~~~~~~i~~-------n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py--~~W~i 161 (214)
+||.||.|.|..+.... ..+..+...+. ..++...|++.|..+|+++|.+.+.+.++--. ..-.+
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~l 177 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALL 177 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHH
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHH
Confidence 79999999999865321 11111111100 01256689999999999999997775442100 12246
Q ss_pred hhHHHhcCC
Q 041136 162 MGLADKLGL 170 (214)
Q Consensus 162 ~~lA~~~gl 170 (214)
.+...+.++
T Consensus 178 r~~l~~~~~ 186 (421)
T 2ih2_A 178 REFLAREGK 186 (421)
T ss_dssp HHHHHHHSE
T ss_pred HHHHHhcCC
Confidence 666666776
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0026 Score=52.27 Aligned_cols=137 Identities=17% Similarity=0.068 Sum_probs=84.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.++ ..+ |+.|..++..+ .+.++++...-.....+...|+.++. +
T Consensus 33 ~~~~~~~VLDiGcG~G~~~~~la~~~~--~~v--~gvD~s~~~l~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~- 100 (256)
T 1nkv_A 33 RMKPGTRILDLGSGSGEMLCTWARDHG--ITG--TGIDMSSLFTA---QAKRRAEELGVSERVHFIHNDAAGYV----A- 100 (256)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTC--CEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEESCCTTCC----C-
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhcC--CeE--EEEeCCHHHHH---HHHHHHHhcCCCcceEEEECChHhCC----c-
Confidence 456788999999777777777998874 344 66675444432 35555544321112344556777653 3
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC--CCC-----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD--DHP----------------- 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~--~~P----------------- 155 (214)
...||.|+.+..-.-.. -...+++.+..+|+|||.+.|+-.. ..|
T Consensus 101 ~~~fD~V~~~~~~~~~~----------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (256)
T 1nkv_A 101 NEKCDVAACVGATWIAG----------------GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDF 164 (256)
T ss_dssp SSCEEEEEEESCGGGTS----------------SSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGS
T ss_pred CCCCCEEEECCChHhcC----------------CHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhccccccc
Confidence 57899999854321110 0245677789999999999876321 111
Q ss_pred CCcccHhhHHHhcCCEEEEEecCC
Q 041136 156 YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
++.-.+..+..++||...+....+
T Consensus 165 ~~~~~~~~~l~~aGf~~~~~~~~~ 188 (256)
T 1nkv_A 165 LTLPGLVGAFDDLGYDVVEMVLAD 188 (256)
T ss_dssp CCHHHHHHHHHTTTBCCCEEEECC
T ss_pred CCHHHHHHHHHHCCCeeEEEEeCC
Confidence 122346778889999887765433
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.015 Score=48.21 Aligned_cols=140 Identities=16% Similarity=0.087 Sum_probs=82.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-----HHHHhcCccHHHHHHHHHh-CCCEEEEccc---cc
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-----RTLKTKHWTSQAHLQSLWS-RGCLVLHGVN---VH 85 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-----~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VD---At 85 (214)
+..++.+||-||=|.=.++..|++.+++...++++-.+.. +.+. .+.+++..... .++.+ ...| +.
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~----~a~~~~~~~~~~~~v~~-~~~d~~~~~ 114 (275)
T 3bkx_A 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLG----QAWNHLLAGPLGDRLTV-HFNTNLSDD 114 (275)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHH----HHHHHHHTSTTGGGEEE-ECSCCTTTC
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHH----HHHHHHHhcCCCCceEE-EECChhhhc
Confidence 4567889999997777777779988864445655554432 1221 24444432211 12333 3334 22
Q ss_pred cCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-----------
Q 041136 86 TMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH----------- 154 (214)
Q Consensus 86 ~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~----------- 154 (214)
.+ .+...+||.|+.+.+-.-... . ..+++.++.++++||.+.++-....
T Consensus 115 ~~----~~~~~~fD~v~~~~~l~~~~~-------------~---~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~ 174 (275)
T 3bkx_A 115 LG----PIADQHFDRVVLAHSLWYFAS-------------A---NALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQ 174 (275)
T ss_dssp CG----GGTTCCCSEEEEESCGGGSSC-------------H---HHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHH
T ss_pred cC----CCCCCCEEEEEEccchhhCCC-------------H---HHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHH
Confidence 22 244578999999877432210 1 1256667788888999877522110
Q ss_pred ---------------C------CCcccHhhHHHhcCCEEEEEecCC
Q 041136 155 ---------------P------YNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 155 ---------------P------y~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+ ++.-.+..+++++||.+.+...+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~ 220 (275)
T 3bkx_A 175 AAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVE 220 (275)
T ss_dssp HHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCBC
T ss_pred HHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEec
Confidence 1 112256778889999999987773
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0014 Score=53.15 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-----HhCCCEEEEccccccCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-----WSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-----~~~g~~Vl~~VDAt~L~~~ 90 (214)
..++.+||-||-|.=.++..|++..+....+++ .|..+...+ .+.+|+..+ ...++. +...|++...
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~--vD~s~~~~~---~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~-- 146 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIG--IDHIKELVD---DSVNNVRKDDPTLLSSGRVQ-LVVGDGRMGY-- 146 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHH---HHHHHHHHHCTHHHHTSSEE-EEESCGGGCC--
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEE--EeCCHHHHH---HHHHHHHhhcccccCCCcEE-EEECCcccCc--
Confidence 457889999997776777778888764345554 554444332 355666553 222344 4445776432
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
.....||+|+.+.|.... +..+..+|++||.+.++.....+
T Consensus 147 --~~~~~fD~i~~~~~~~~~----------------------~~~~~~~LkpgG~lv~~~~~~~~ 187 (226)
T 1i1n_A 147 --AEEAPYDAIHVGAAAPVV----------------------PQALIDQLKPGGRLILPVGPAGG 187 (226)
T ss_dssp --GGGCCEEEEEECSBBSSC----------------------CHHHHHTEEEEEEEEEEESCTTS
T ss_pred --ccCCCcCEEEECCchHHH----------------------HHHHHHhcCCCcEEEEEEecCCC
Confidence 234679999999876321 13467899999999999876544
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00067 Score=57.77 Aligned_cols=105 Identities=14% Similarity=0.171 Sum_probs=63.9
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh--CCCEEEEccccccCCCCCCCCCC
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS--RGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+||-||=|.=.++..|++. + .++ |+.|..+++.+ .+.+++..... ....-+..-|+.++. + ..
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~-~--~~v--~gvD~s~~~~~---~a~~~~~~~~~~~~~~v~~~~~d~~~~~----~-~~ 149 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL-G--WEV--TALELSTSVLA---AFRKRLAEAPADVRDRCTLVQGDMSAFA----L-DK 149 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT-T--CCE--EEEESCHHHHH---HHHHHHHTSCHHHHTTEEEEECBTTBCC----C-SC
T ss_pred CCcEEEEeccCCHHHHHHHHc-C--CeE--EEEECCHHHHH---HHHHHHhhcccccccceEEEeCchhcCC----c-CC
Confidence 449999996666667668776 2 345 45564333331 24444432210 022445566887764 2 57
Q ss_pred cccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
.||.||+.+ -|.- ..+.+..+++.+..+|+|||.+.|+..
T Consensus 150 ~fD~v~~~~~~~~~~---------------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 150 RFGTVVISSGSINEL---------------DEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp CEEEEEECHHHHTTS---------------CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCEEEECCcccccC---------------CHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 899998642 2221 233567788889999999999988754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00065 Score=57.98 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=71.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.....+++||-+|=|.=+|+..||+..+ +..+ ++.|..++..+ .+.+|++...-.++ .++.-|+.++ ..
T Consensus 115 ~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V--~~vD~s~~av~---~a~~n~~~n~l~~~-~~~~~d~~~~-~~--- 183 (272)
T 3a27_A 115 FISNENEVVVDMFAGIGYFTIPLAKYSK-PKLV--YAIEKNPTAYH---YLCENIKLNKLNNV-IPILADNRDV-EL--- 183 (272)
T ss_dssp TSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEE--EEEECCHHHHH---HHHHHHHHTTCSSE-EEEESCGGGC-CC---
T ss_pred HhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEE--EEEeCCHHHHH---HHHHHHHHcCCCCE-EEEECChHHc-Cc---
Confidence 3467788999998666667777888764 3344 55565444432 47777766543344 4677799887 32
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..+||.||.|+|. +. ..++..+..+|+++|.++++-.
T Consensus 184 -~~~~D~Vi~d~p~-~~-------------------~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 184 -KDVADRVIMGYVH-KT-------------------HKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp -TTCEEEEEECCCS-SG-------------------GGGHHHHHHHEEEEEEEEEEEE
T ss_pred -cCCceEEEECCcc-cH-------------------HHHHHHHHHHcCCCCEEEEEEc
Confidence 5679999999996 21 1245567788999999987744
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0035 Score=52.49 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=71.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-H-hCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-W-SRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~-~~g~~Vl~~VDAt~L~~~~~ 92 (214)
......+||-+|=|.=+++.+|++.+++...++ ++|..++..+ .+.+|++.. . ......+...|+.++.
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~--~vD~~~~~~~---~a~~~~~~~~g~~~~~v~~~~~d~~~~~---- 166 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVI--SYEQRADHAE---HARRNVSGCYGQPPDNWRLVVSDLADSE---- 166 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEE--EECSCHHHHH---HHHHHHHHHHTSCCTTEEEECSCGGGCC----
T ss_pred CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEE--EEeCCHHHHH---HHHHHHHHhcCCCCCcEEEEECchHhcC----
Confidence 456788999999887788888999876544554 5564444332 466676654 2 1123444556777652
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+....||.|+.|.|+.- .++..+..+|+++|.+.+..
T Consensus 167 ~~~~~~D~v~~~~~~~~---------------------~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 167 LPDGSVDRAVLDMLAPW---------------------EVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp CCTTCEEEEEEESSCGG---------------------GGHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceeEEEECCcCHH---------------------HHHHHHHHhCCCCCEEEEEe
Confidence 34567999999877321 35677889999999998874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0011 Score=51.52 Aligned_cols=124 Identities=19% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~ 93 (214)
+..++.+||-+|=|.=.++..|++.. ..+++ .|..++..+ .+.+|++.........+...|+.+ +..
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~--~D~~~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~~~---- 97 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYA--IDRNPEAIS---TTEMNLQRHGLGDNVTLMEGDAPEALCK---- 97 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEE--EESCHHHHH---HHHHHHHHTTCCTTEEEEESCHHHHHTT----
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHhc---CEEEE--EECCHHHHH---HHHHHHHHcCCCcceEEEecCHHHhccc----
Confidence 45678899999977767777777765 34554 454333331 355566554321223344556665 221
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVL 172 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l 172 (214)
...||.|+.+.|-. -+..+++.+..+|+++|.+.+.... +...+.+..+.++.|+.+
T Consensus 98 -~~~~D~v~~~~~~~-------------------~~~~~l~~~~~~l~~gG~l~~~~~~--~~~~~~~~~~l~~~g~~~ 154 (192)
T 1l3i_A 98 -IPDIDIAVVGGSGG-------------------ELQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGFDV 154 (192)
T ss_dssp -SCCEEEEEESCCTT-------------------CHHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTCCC
T ss_pred -CCCCCEEEECCchH-------------------HHHHHHHHHHHhcCCCcEEEEEecC--cchHHHHHHHHHHCCCce
Confidence 14799999986530 1256788899999999999887443 235667778888888844
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.016 Score=50.60 Aligned_cols=137 Identities=12% Similarity=0.085 Sum_probs=87.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++-.|++|. +++.+ .+.++++...-.+..-+..-|+.++. +.
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~----~~ 255 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFP---ELDSTILNL-PGAID---LVNENAAEKGVADRMRGIAVDIYKES----YP 255 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCT---TCEEEEEEC-GGGHH---HHHHHHHHTTCTTTEEEEECCTTTSC----CC
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCC---CCeEEEEec-HHHHH---HHHHHHHhcCCCCCEEEEeCccccCC----CC
Confidence 567889999999777777777998874 345667787 54442 45556554322232444555776642 22
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-cC--------------------C
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-RD--------------------D 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~~--------------------~ 153 (214)
. +|.|+.+..-... ..+-...+++.+..+|+|||.+.|.- .. +
T Consensus 256 ~--~D~v~~~~vlh~~--------------~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g 319 (359)
T 1x19_A 256 E--ADAVLFCRILYSA--------------NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMP 319 (359)
T ss_dssp C--CSEEEEESCGGGS--------------CHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSS
T ss_pred C--CCEEEEechhccC--------------CHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCC
Confidence 2 3999997664332 12345677888999999999986542 11 2
Q ss_pred CC----CCcccHhhHHHhcCCEEEEEecC
Q 041136 154 HP----YNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 154 ~P----y~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.. ++.=++.++.+++||...+..+.
T Consensus 320 ~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 348 (359)
T 1x19_A 320 FSVLGFKEQARYKEILESLGYKDVTMVRK 348 (359)
T ss_dssp CCCCCCCCGGGHHHHHHHHTCEEEEEEEE
T ss_pred CcccCCCCHHHHHHHHHHCCCceEEEEec
Confidence 11 34445667888889988776554
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00035 Score=54.61 Aligned_cols=118 Identities=10% Similarity=0.110 Sum_probs=67.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+...+.+||-+|=|.=.++..+++. + ...+++ .|..++..+ .+..|++...-.+...++.-|+.+........
T Consensus 41 ~~~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~--vD~~~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 113 (187)
T 2fhp_A 41 PYFDGGMALDLYSGSGGLAIEAVSR-G-MDKSIC--IEKNFAALK---VIKENIAITKEPEKFEVRKMDANRALEQFYEE 113 (187)
T ss_dssp SCCSSCEEEETTCTTCHHHHHHHHT-T-CSEEEE--EESCHHHHH---HHHHHHHHHTCGGGEEEEESCHHHHHHHHHHT
T ss_pred hhcCCCCEEEeCCccCHHHHHHHHc-C-CCEEEE--EECCHHHHH---HHHHHHHHhCCCcceEEEECcHHHHHHHHHhc
Confidence 4567889999985555555556663 2 234554 554343332 46667766532122344556776532100012
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
..+||.|+.|.|..-.. ...++... .+..+|+++|.+.+......
T Consensus 114 ~~~fD~i~~~~~~~~~~-------------~~~~~~~l--~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 114 KLQFDLVLLDPPYAKQE-------------IVSQLEKM--LERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp TCCEEEEEECCCGGGCC-------------HHHHHHHH--HHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCEEEECCCCCchh-------------HHHHHHHH--HHhcccCCCCEEEEEeCCcc
Confidence 46799999999943110 12222222 24788999999988866544
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0077 Score=53.26 Aligned_cols=136 Identities=12% Similarity=0.137 Sum_probs=85.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++..|.+|. +++.+ .+.+++....-.+-.-+..-|+. .. +.
T Consensus 199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~~~~~l~~~v~~~~~d~~--~~---~p 266 (369)
T 3gwz_A 199 DFSGAATAVDIGGGRGSLMAAVLDAFP---GLRGTLLER-PPVAE---EARELLTGRGLADRCEILPGDFF--ET---IP 266 (369)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHH---HHHHHHHHTTCTTTEEEEECCTT--TC---CC
T ss_pred CCccCcEEEEeCCCccHHHHHHHHHCC---CCeEEEEcC-HHHHH---HHHHhhhhcCcCCceEEeccCCC--CC---CC
Confidence 567789999999766677778999874 345677787 54442 45555554321222444455655 11 22
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec--C-------------------C
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR--D-------------------D 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~--~-------------------~ 153 (214)
. .||.|+...--.-.. ..-...+++.+..+|+|||.+.|.-. . +
T Consensus 267 ~-~~D~v~~~~vlh~~~--------------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g 331 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWD--------------DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGG 331 (369)
T ss_dssp S-SCSEEEEESCGGGSC--------------HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSC
T ss_pred C-CceEEEhhhhhccCC--------------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCC
Confidence 2 699999876543321 12234567778899999999876421 1 1
Q ss_pred CCCCcccHhhHHHhcCCEEEEEec
Q 041136 154 HPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 154 ~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
..++.-++..+.+++||...+..+
T Consensus 332 ~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 332 AERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp CCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred ccCCHHHHHHHHHHCCCeEEEEEE
Confidence 123333466788889999988655
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0041 Score=50.66 Aligned_cols=136 Identities=17% Similarity=0.109 Sum_probs=83.9
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+||-||=|.=.++..|++. ..-.|+.|..++..+ .+.+++.......-.-+...|++++. ...+||
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~-----~~~v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD 134 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASP-----ERFVVGLDISESALA---KANETYGSSPKAEYFSFVKEDVFTWR-----PTELFD 134 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBT-----TEEEEEECSCHHHHH---HHHHHHTTSGGGGGEEEECCCTTTCC-----CSSCEE
T ss_pred CCEEEeCCCCCHHHHHHHhC-----CCeEEEEECCHHHHH---HHHHHhhccCCCcceEEEECchhcCC-----CCCCee
Confidence 59999996665666667652 234667775444432 34444433211122455666777754 234899
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC------CCCC--CcccHhhHHHhcCCE
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD------DHPY--NQWNVMGLADKLGLV 171 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~------~~Py--~~W~i~~lA~~~gl~ 171 (214)
.|+.+....-.. .+....+++.+..+|++||.+.+.... +.|+ +.-.+..+.+.+||.
T Consensus 135 ~v~~~~~l~~~~--------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 200 (235)
T 3lcc_A 135 LIFDYVFFCAIE--------------PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFK 200 (235)
T ss_dssp EEEEESSTTTSC--------------GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEE
T ss_pred EEEEChhhhcCC--------------HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCe
Confidence 999876543321 113456788889999999998775432 2332 233577788899999
Q ss_pred EEEEecCCCCC
Q 041136 172 LKEKVEFLKQD 182 (214)
Q Consensus 172 l~~~~~F~~~~ 182 (214)
..+........
T Consensus 201 ~~~~~~~~~~~ 211 (235)
T 3lcc_A 201 AVSVEENPHAI 211 (235)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEecCCcc
Confidence 98876665543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.011 Score=48.47 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=77.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..++.+||-||=|.=.++..|++..+ ... .++.|..++..+ ...+..+. ..++..+ .-|++.+.....+.
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~--V~gvD~s~~~l~---~~~~~a~~--~~~v~~~-~~d~~~~~~~~~~~ 124 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVD-EGI--IYAVEYSAKPFE---KLLELVRE--RNNIIPL-LFDASKPWKYSGIV 124 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTT-TSE--EEEECCCHHHHH---HHHHHHHH--CSSEEEE-CSCTTCGGGTTTTC
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcC-CCE--EEEEECCHHHHH---HHHHHHhc--CCCeEEE-EcCCCCchhhcccc
Confidence 456788999999555445666888775 334 455664443221 11111221 1244443 34787753322233
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC---CCcccHh----hHHHh
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP---YNQWNVM----GLADK 167 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P---y~~W~i~----~lA~~ 167 (214)
.+||.|+.|.++.- ....+++.+..+|+|||.+.+++..+.. .....+. +..++
T Consensus 125 -~~fD~V~~~~~~~~------------------~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (210)
T 1nt2_A 125 -EKVDLIYQDIAQKN------------------QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEG 185 (210)
T ss_dssp -CCEEEEEECCCSTT------------------HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred -cceeEEEEeccChh------------------HHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHh
Confidence 68999999964420 1234677889999999999888644211 1112221 11345
Q ss_pred cCCEEEEEecCC
Q 041136 168 LGLVLKEKVEFL 179 (214)
Q Consensus 168 ~gl~l~~~~~F~ 179 (214)
+ |.+.+.....
T Consensus 186 ~-f~~~~~~~~~ 196 (210)
T 1nt2_A 186 D-FKIVKHGSLM 196 (210)
T ss_dssp T-SEEEEEEECT
T ss_pred h-cEEeeeecCC
Confidence 5 9888876654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00084 Score=60.16 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=87.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+++||-+|=|.=+|+..+|+. + ...+++ .|..++.. ..+.+|++.+.-.+...+..-|+.++.....-...+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~--vD~s~~~l---~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~ 289 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIG--IDKSPRAI---ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEK 289 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-T-CSEEEE--EESCHHHH---HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEecCCCCHHHHHHHHC-C-CCEEEE--EeCCHHHH---HHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCC
Confidence 7889999986666667667775 3 234554 55433333 146777765432112334455776542110002467
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-Ccc-c-HhhHHHhcCCEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQW-N-VMGLADKLGLVLKE 174 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W-~-i~~lA~~~gl~l~~ 174 (214)
||.||.|.|..+... . .+.........++..+..+|+++|.+.++.|..... +.| + +...+...|..+.-
T Consensus 290 fD~Vi~dpP~~~~~~----~---~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 362 (396)
T 2as0_A 290 FDIVVLDPPAFVQHE----K---DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKM 362 (396)
T ss_dssp EEEEEECCCCSCSSG----G---GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCEEEECCCCCCCCH----H---HHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 999999999877421 1 133445678889999999999999998887765532 222 2 33466667765543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0032 Score=48.60 Aligned_cols=128 Identities=12% Similarity=0.043 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~ 93 (214)
.-....+||-||=|.=.++..|++.++ ....++.|..++..+ .+.+|++.+.... .+.+.-|+.. +. .
T Consensus 22 ~~~~~~~vldiG~G~G~~~~~l~~~~~---~~~v~~vD~~~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~~----~ 90 (178)
T 3hm2_A 22 APKPHETLWDIGGGSGSIAIEWLRSTP---QTTAVCFEISEERRE---RILSNAINLGVSD-RIAVQQGAPRAFD----D 90 (178)
T ss_dssp CCCTTEEEEEESTTTTHHHHHHHTTSS---SEEEEEECSCHHHHH---HHHHHHHTTTCTT-SEEEECCTTGGGG----G
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHCC---CCeEEEEeCCHHHHH---HHHHHHHHhCCCC-CEEEecchHhhhh----c
Confidence 345678999999887777777888763 344566775554432 3566665443221 2244456543 11 1
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
....||.|+.+++..- ..+++.+..+|+++|.+.++.... .+...+..+.++.|+.+.
T Consensus 91 ~~~~~D~i~~~~~~~~--------------------~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 91 VPDNPDVIFIGGGLTA--------------------PGVFAAAWKRLPVGGRLVANAVTV--ESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp CCSCCSEEEECC-TTC--------------------TTHHHHHHHTCCTTCEEEEEECSH--HHHHHHHHHHHHHCCEEE
T ss_pred cCCCCCEEEECCcccH--------------------HHHHHHHHHhcCCCCEEEEEeecc--ccHHHHHHHHHHcCCeeE
Confidence 1267999998776421 446677889999999998774331 133345566667777766
Q ss_pred EE
Q 041136 174 EK 175 (214)
Q Consensus 174 ~~ 175 (214)
+.
T Consensus 149 ~~ 150 (178)
T 3hm2_A 149 SF 150 (178)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00049 Score=59.73 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH----hCCCEEEEccccccC-CCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW----SRGCLVLHGVNVHTM-DRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~----~~g~~Vl~~VDAt~L-~~~~ 91 (214)
....+||.||=|+=.++..|+++.+ ..++++.-+|. ++.+ -+.+|+..+. ...+.++.+ |+.+. ..
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~--~~~~---~a~~~~~~~~~~~~~~~v~~~~~-D~~~~l~~-- 159 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDG--LVIE---AARKYLKQTSCGFDDPRAEIVIA-NGAEYVRK-- 159 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCH--HHHH---HHHHHCHHHHGGGGCTTEEEEES-CHHHHGGG--
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCH--HHHH---HHHHHhHhhccccCCCceEEEEC-cHHHHHhh--
Confidence 3458999999888888888887653 34565554443 3331 3555665542 234555544 66652 22
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...+||.||.|.|+.+... ........|++.+..+|++||.+.+...
T Consensus 160 --~~~~fD~Ii~d~~~~~~~~-----------~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 160 --FKNEFDVIIIDSTDPTAGQ-----------GGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp --CSSCEEEEEEEC---------------------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred --CCCCceEEEEcCCCcccCc-----------hhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 2467999999988642110 0111236789999999999999988743
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0066 Score=48.60 Aligned_cols=128 Identities=11% Similarity=0.159 Sum_probs=78.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + . -.|+.|..++..+ .+.+++. .++. +...|+.++. +. .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~-~--~--~v~~vD~s~~~~~---~a~~~~~----~~~~-~~~~d~~~~~----~~-~ 105 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLA-G--R--TVYGIEPSREMRM---IAKEKLP----KEFS-ITEGDFLSFE----VP-T 105 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHT-T--C--EEEEECSCHHHHH---HHHHHSC----TTCC-EESCCSSSCC----CC-S
T ss_pred cCCCeEEEeCCCCCHHHHHHHhC-C--C--eEEEEeCCHHHHH---HHHHhCC----CceE-EEeCChhhcC----CC-C
Confidence 36789999997777777778876 2 2 4556675444331 2333222 2343 4456777764 23 7
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC---------------------
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP--------------------- 155 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P--------------------- 155 (214)
+||.|+.+..-.-.. ..-...+++.+..+|++||.+.|+...-.+
T Consensus 106 ~fD~v~~~~~l~~~~--------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (220)
T 3hnr_A 106 SIDTIVSTYAFHHLT--------------DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLAN 171 (220)
T ss_dssp CCSEEEEESCGGGSC--------------HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CeEEEEECcchhcCC--------------hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchh
Confidence 899999986432211 111245778889999999999887321000
Q ss_pred -------CCcccHhhHHHhcCCEEEEEe
Q 041136 156 -------YNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 156 -------y~~W~i~~lA~~~gl~l~~~~ 176 (214)
++.-.+..+.+++||.+....
T Consensus 172 ~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 199 (220)
T 3hnr_A 172 DLQTEYYTRIPVMQTIFENNGFHVTFTR 199 (220)
T ss_dssp HHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence 122346778889999887653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0022 Score=51.81 Aligned_cols=132 Identities=16% Similarity=0.234 Sum_probs=81.2
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+.+..+..+||-||=|.=.++..|++.. .+++ +.|..++..+ .+.++... ++.+ ...|+.++
T Consensus 37 l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~--gvD~s~~~~~---~a~~~~~~----~v~~-~~~d~~~~----- 98 (250)
T 2p7i_A 37 FTPFFRPGNLLELGSFKGDFTSRLQEHF---NDIT--CVEASEEAIS---HAQGRLKD----GITY-IHSRFEDA----- 98 (250)
T ss_dssp HGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEE--EEESCHHHHH---HHHHHSCS----CEEE-EESCGGGC-----
T ss_pred HHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEE--EEeCCHHHHH---HHHHhhhC----CeEE-EEccHHHc-----
Confidence 4456678899999966656666677653 2454 5564333321 12222211 4444 34577766
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHH-hccCCCCEEEEEecCCC-----------------
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGR-EMLGEGGEVHVTLRDDH----------------- 154 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~-~lL~~~G~i~VTl~~~~----------------- 154 (214)
+...+||.|+.++--.-.. + ...+++.+. .+|+|||.+.|+..+..
T Consensus 99 ~~~~~fD~v~~~~~l~~~~-------------~---~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 162 (250)
T 2p7i_A 99 QLPRRYDNIVLTHVLEHID-------------D---PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNS 162 (250)
T ss_dssp CCSSCEEEEEEESCGGGCS-------------S---HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTT
T ss_pred CcCCcccEEEEhhHHHhhc-------------C---HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccch
Confidence 2356799999886321110 1 146788889 99999999988763311
Q ss_pred -------------CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 -------------PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 -------------Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
+++.-.+..+.+++||.+.+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 199 (250)
T 2p7i_A 163 AVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGI 199 (250)
T ss_dssp CCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred hcccccccccccccCCHHHHHHHHHHCCCeEEEEeee
Confidence 133446778899999999887644
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.017 Score=45.92 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-+|=|.=.++..|++.. +...+ ++.|..++..+ .+.+|++.+...++ -+..-|+.+.-. .
T Consensus 37 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v--~~vD~s~~~~~---~a~~~~~~~~~~~v-~~~~~d~~~~~~----~ 105 (204)
T 3e05_A 37 RLQDDLVMWDIGAGSASVSIEASNLM-PNGRI--FALERNPQYLG---FIRDNLKKFVARNV-TLVEAFAPEGLD----D 105 (204)
T ss_dssp TCCTTCEEEEETCTTCHHHHHHHHHC-TTSEE--EEEECCHHHHH---HHHHHHHHHTCTTE-EEEECCTTTTCT----T
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHC-CCCEE--EEEeCCHHHHH---HHHHHHHHhCCCcE-EEEeCChhhhhh----c
Confidence 45678899999976666677788875 23445 45564444332 46677766543223 344456643321 1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLV 171 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~ 171 (214)
...||.|+.+.+.. -+..+++.+..+|+++|.+.+....- .+.-.+..+.++.|+.
T Consensus 106 ~~~~D~i~~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 106 LPDPDRVFIGGSGG-------------------MLEEIIDAVDRRLKSEGVIVLNAVTL--DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp SCCCSEEEESCCTT-------------------CHHHHHHHHHHHCCTTCEEEEEECBH--HHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEECCCCc-------------------CHHHHHHHHHHhcCCCeEEEEEeccc--ccHHHHHHHHHHCCCc
Confidence 25699999987642 12367888999999999998873321 1334466677888873
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0004 Score=61.71 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=71.5
Q ss_pred CeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCccc
Q 041136 20 QRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFD 99 (214)
Q Consensus 20 ~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD 99 (214)
.+||.||=|+=+.++.|++.+. ...+ |+.|..+++.+ -+.+++.......+.|+ .-||.+.-. .+...+||
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p-~~~v--~~VEidp~vi~---~Ar~~~~~~~~~rv~v~-~~Da~~~l~--~~~~~~fD 161 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP-QSRN--TVVELDAELAR---LSREWFDIPRAPRVKIR-VDDARMVAE--SFTPASRD 161 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST-TCEE--EEEESCHHHHH---HHHHHSCCCCTTTEEEE-ESCHHHHHH--TCCTTCEE
T ss_pred CEEEEEECCcCHHHHHHHHHCC-CcEE--EEEECCHHHHH---HHHHhccccCCCceEEE-ECcHHHHHh--hccCCCCC
Confidence 4999999999999999999874 3355 45554444442 23444332222234444 447665321 12356899
Q ss_pred EEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 100 VIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 100 ~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
.||.+.+...... ....-..||+.+..+|+++|.+.+.+.+..
T Consensus 162 vIi~D~~~~~~~~------------~~L~t~efl~~~~r~LkpgGvlv~~~~~~~ 204 (317)
T 3gjy_A 162 VIIRDVFAGAITP------------QNFTTVEFFEHCHRGLAPGGLYVANCGDHS 204 (317)
T ss_dssp EEEECCSTTSCCC------------GGGSBHHHHHHHHHHEEEEEEEEEEEEECT
T ss_pred EEEECCCCccccc------------hhhhHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence 9999965543210 011236899999999999999987776543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0025 Score=49.96 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++. + .++ |+.|..++..+ .+.+++......+ ..+...|+.++. +
T Consensus 29 ~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~vD~s~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~~----~- 94 (199)
T 2xvm_A 29 KVVKPGKTLDLGCGNGRNSLYLAAN-G--YDV--DAWDKNAMSIA---NVERIKSIENLDN-LHTRVVDLNNLT----F- 94 (199)
T ss_dssp TTSCSCEEEEETCTTSHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHHHHHTCTT-EEEEECCGGGCC----C-
T ss_pred hccCCCeEEEEcCCCCHHHHHHHHC-C--CeE--EEEECCHHHHH---HHHHHHHhCCCCC-cEEEEcchhhCC----C-
Confidence 4556789999997766677778876 2 344 55564343331 3555554433223 444556777753 3
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...||.|+.+.+..-.. .+-+..+++.+..+|++||.+.|.
T Consensus 95 ~~~~D~v~~~~~l~~~~--------------~~~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 95 DRQYDFILSTVVLMFLE--------------AKTIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp CCCEEEEEEESCGGGSC--------------GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCceEEEEcchhhhCC--------------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 57799999986532211 112356788889999999997554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0019 Score=50.29 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=68.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-+|=|.=.++..|++. + ... .++.|..++..+ .+.+|++...-.+...+..-|+.+.-. ..
T Consensus 28 ~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~--v~~vD~~~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~~---~~ 97 (177)
T 2esr_A 28 PYFNGGRVLDLFAGSGGLAIEAVSR-G-MSA--AVLVEKNRKAQA---IIQDNIIMTKAENRFTLLKMEAERAID---CL 97 (177)
T ss_dssp SCCCSCEEEEETCTTCHHHHHHHHT-T-CCE--EEEECCCHHHHH---HHHHHHHTTTCGGGEEEECSCHHHHHH---HB
T ss_pred hhcCCCeEEEeCCCCCHHHHHHHHc-C-CCE--EEEEECCHHHHH---HHHHHHHHcCCCCceEEEECcHHHhHH---hh
Confidence 3567889999997766667667775 2 234 455665444432 356666544211123445567766211 11
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
...||.|+.|.|.... ...+++..+.+ ..+|+++|.+.+......
T Consensus 98 ~~~fD~i~~~~~~~~~-------------~~~~~~~~l~~--~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 98 TGRFDLVFLDPPYAKE-------------TIVATIEALAA--KNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CSCEEEEEECCSSHHH-------------HHHHHHHHHHH--TTCEEEEEEEEEEEETTC
T ss_pred cCCCCEEEECCCCCcc-------------hHHHHHHHHHh--CCCcCCCcEEEEEECCcc
Confidence 2459999999885211 12334444443 588999999988865543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0013 Score=59.05 Aligned_cols=146 Identities=15% Similarity=0.076 Sum_probs=85.6
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-CCCEEEEccccccCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-RGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-~g~~Vl~~VDAt~L~~~~ 91 (214)
+..+..+++||-+|=|.=.|+..+|+. + ...+ ++.|..++.. ..+.+|++.+.- .+...+..-|+.++-...
T Consensus 215 l~~~~~~~~VLDl~cG~G~~sl~la~~-g-~~~V--~~vD~s~~al---~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~ 287 (396)
T 3c0k_A 215 TRRYVENKRVLNCFSYTGGFAVSALMG-G-CSQV--VSVDTSQEAL---DIARQNVELNKLDLSKAEFVRDDVFKLLRTY 287 (396)
T ss_dssp HHHHCTTCEEEEESCTTCSHHHHHHHT-T-CSEE--EEEESCHHHH---HHHHHHHHHTTCCGGGEEEEESCHHHHHHHH
T ss_pred HHHhhCCCeEEEeeccCCHHHHHHHHC-C-CCEE--EEEECCHHHH---HHHHHHHHHcCCCccceEEEECCHHHHHHHH
Confidence 444467889999985555566667764 2 2344 4556444333 147777765432 112334555776642110
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-Ccc-c-HhhHHHhc
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQW-N-VMGLADKL 168 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W-~-i~~lA~~~ 168 (214)
.-...+||.||.|.|..+...... ......+..++..+..+|+++|.++++-+..... +.| + +.+.+.+.
T Consensus 288 ~~~~~~fD~Ii~dpP~~~~~~~~~-------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~ 360 (396)
T 3c0k_A 288 RDRGEKFDVIVMDPPKFVENKSQL-------MGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDA 360 (396)
T ss_dssp HHTTCCEEEEEECCSSTTTCSSSS-------SCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCCCCChhHH-------HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHc
Confidence 001467999999999876532111 1122356678888999999999999887765532 122 2 33466677
Q ss_pred CCEE
Q 041136 169 GLVL 172 (214)
Q Consensus 169 gl~l 172 (214)
|..+
T Consensus 361 g~~~ 364 (396)
T 3c0k_A 361 GRDV 364 (396)
T ss_dssp TCCE
T ss_pred CCeE
Confidence 7544
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.014 Score=46.50 Aligned_cols=129 Identities=12% Similarity=0.140 Sum_probs=81.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++. + .++ |+.|..++.. +..++.... +...|+.++.. .+...
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~--~~~--~~~D~~~~~~----------~~~~~~~~~-~~~~d~~~~~~--~~~~~ 92 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G--TRV--SGIEAFPEAA----------EQAKEKLDH-VVLGDIETMDM--PYEEE 92 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T--CEE--EEEESSHHHH----------HHHHTTSSE-EEESCTTTCCC--CSCTT
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C--CeE--EEEeCCHHHH----------HHHHHhCCc-EEEcchhhcCC--CCCCC
Confidence 57889999998877777778876 3 344 4555433322 222222223 44557665422 24557
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC-----------------------
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD----------------------- 153 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~----------------------- 153 (214)
.||.|+.+..-.-.. + ...+++.+..+|+++|.+.++.-..
T Consensus 93 ~fD~v~~~~~l~~~~-------------~---~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (230)
T 3cc8_A 93 QFDCVIFGDVLEHLF-------------D---PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLD 156 (230)
T ss_dssp CEEEEEEESCGGGSS-------------C---HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTB
T ss_pred ccCEEEECChhhhcC-------------C---HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCC
Confidence 899999975432211 1 1377888999999999998875321
Q ss_pred ----CCCCcccHhhHHHhcCCEEEEEecCC
Q 041136 154 ----HPYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 154 ----~Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
..++...+..+.+++||...+...+.
T Consensus 157 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 157 KTHIRFFTFNEMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp TTCCCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cceEEEecHHHHHHHHHHcCCeEEEEEecc
Confidence 11344567788999999988766544
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.012 Score=50.68 Aligned_cols=135 Identities=17% Similarity=0.182 Sum_probs=82.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++. .+||-||=|.=.++..|++.+. ++..|+.|. +... ..+.+++....-.+..-+..-|+.+ . +.
T Consensus 165 ~~~~-~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~---~~a~~~~~~~~~~~~v~~~~~d~~~--~---~~ 231 (334)
T 2ip2_A 165 DFRG-RSFVDVGGGSGELTKAILQAEP---SARGVMLDR-EGSL---GVARDNLSSLLAGERVSLVGGDMLQ--E---VP 231 (334)
T ss_dssp CCTT-CEEEEETCTTCHHHHHHHHHCT---TCEEEEEEC-TTCT---HHHHHHTHHHHHTTSEEEEESCTTT--C---CC
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHCC---CCEEEEeCc-HHHH---HHHHHHHhhcCCCCcEEEecCCCCC--C---CC
Confidence 5666 8999999777677777998874 235566776 4433 2355565544322223334446654 1 22
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe---cC-------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL---RD------------------- 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl---~~------------------- 152 (214)
..||.|+.+..-.-.. ..-...+++.+..+|+|||.+.|.- .+
T Consensus 232 -~~~D~v~~~~vl~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~ 296 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLD--------------EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACA 296 (334)
T ss_dssp -SSCSEEEEESCGGGCC--------------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHS
T ss_pred -CCCCEEEEchhccCCC--------------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCC
Confidence 4699999876643221 1123567788889999999987762 11
Q ss_pred CCCCCcccHhhHHHhcCCEEEEEec
Q 041136 153 DHPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 153 ~~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
|..++.=++.++.+++||...+..+
T Consensus 297 ~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 297 GRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCceeEEEE
Confidence 1112233456778888998887654
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0035 Score=49.73 Aligned_cols=112 Identities=8% Similarity=0.014 Sum_probs=68.6
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.......+||-+|-|.=.++..++...+ . ..++.|..++..+ .+.++++... .++.+ ...|+.++. +
T Consensus 19 ~~~~~~~~vLDiGcG~G~~~~~~~~~~~--~--~v~~vD~s~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~----~ 85 (209)
T 2p8j_A 19 NESNLDKTVLDCGAGGDLPPLSIFVEDG--Y--KTYGIEISDLQLK---KAENFSRENN-FKLNI-SKGDIRKLP----F 85 (209)
T ss_dssp HHSSSCSEEEEESCCSSSCTHHHHHHTT--C--EEEEEECCHHHHH---HHHHHHHHHT-CCCCE-EECCTTSCC----S
T ss_pred hccCCCCEEEEECCCCCHHHHHHHHhCC--C--EEEEEECCHHHHH---HHHHHHHhcC-CceEE-EECchhhCC----C
Confidence 3456678999999776665444444443 3 4556675444442 3555554432 23444 445777653 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
...+||.|+.+.+-... ...-...+++.+..+|++||.+.++...
T Consensus 86 ~~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 86 KDESMSFVYSYGTIFHM--------------RKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp CTTCEEEEEECSCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCceeEEEEcChHHhC--------------CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 45789999987542211 1123567788899999999999877543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00042 Score=61.03 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=65.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEcccccc-CCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHT-MDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~-L~~~~ 91 (214)
.+..+||.||-|+=..+..|+++.+ ...+++.-+| +++.+ -|.+++..+ ....+. ++.-|+.+ |..
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid--~~~i~---~Ar~~~~~~~~~~~~~rv~-~~~~D~~~~l~~-- 177 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEID--EMVID---VAKKFLPGMSCGFSHPKLD-LFCGDGFEFLKN-- 177 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSC--HHHHH---HHHHHCTTTSGGGGCTTEE-EECSCHHHHHHH--
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECC--HHHHH---HHHHHHHHhccccCCCCEE-EEEChHHHHHHh--
Confidence 3568999999888888888887642 3455554444 33331 344554432 122333 34557665 221
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH-HHHHHHHHhccCCCCEEEEEe
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL-EAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL-~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.||.|.|+.-.. ...|. ..||+.+..+|++||.+.+..
T Consensus 178 --~~~~fD~Ii~d~~~~~~~-------------~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 178 --HKNEFDVIITDSSDPVGP-------------AESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp --CTTCEEEEEECCC--------------------------HHHHHHHHEEEEEEEEEEC
T ss_pred --cCCCceEEEEcCCCCCCc-------------chhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 246799999999864221 12344 889999999999999988763
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.011 Score=47.01 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=65.6
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+.......+||-||=|.=.++..|++. + .++ |+.|..++..+ .+.. ......-+...|+.++
T Consensus 41 l~~~~~~~~vLdiG~G~G~~~~~l~~~-~--~~v--~~~D~s~~~~~---~a~~-----~~~~~~~~~~~d~~~~----- 102 (218)
T 3ou2_A 41 LRAGNIRGDVLELASGTGYWTRHLSGL-A--DRV--TALDGSAEMIA---EAGR-----HGLDNVEFRQQDLFDW----- 102 (218)
T ss_dssp HTTTTSCSEEEEESCTTSHHHHHHHHH-S--SEE--EEEESCHHHHH---HHGG-----GCCTTEEEEECCTTSC-----
T ss_pred HhcCCCCCeEEEECCCCCHHHHHHHhc-C--CeE--EEEeCCHHHHH---HHHh-----cCCCCeEEEecccccC-----
Confidence 344677789999996666666668776 2 344 45564333221 1111 1112244455677665
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+...+||.|+.++--.-. ....+..+++.+..+|++||.+.++.
T Consensus 103 ~~~~~~D~v~~~~~l~~~--------------~~~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 103 TPDRQWDAVFFAHWLAHV--------------PDDRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp CCSSCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceeEEEEechhhcC--------------CHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 346789999998632111 12356778888999999999997764
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.011 Score=51.52 Aligned_cols=138 Identities=24% Similarity=0.260 Sum_probs=84.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++.++.+|. ++..+ .+.+++....-.+...+..-|+.+ . +.
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~--~---~~ 247 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAP---HVSATVLEM-AGTVD---TARSYLKDEGLSDRVDVVEGDFFE--P---LP 247 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-TTHHH---HHHHHHHHTTCTTTEEEEECCTTS--C---CS
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCC---CCEEEEecC-HHHHH---HHHHHHHhcCCCCceEEEeCCCCC--C---CC
Confidence 567788999999777777777988863 456677776 43332 456666543222223344456653 1 11
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC----C-----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD----D----------------- 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~----~----------------- 153 (214)
..||.|+.+..-.-.. ..-...+++.+..+|++||.+.|.-.. .
T Consensus 248 -~~~D~v~~~~vl~~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~ 312 (360)
T 1tw3_A 248 -RKADAIILSFVLLNWP--------------DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFL 312 (360)
T ss_dssp -SCEEEEEEESCGGGSC--------------HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHH
T ss_pred -CCccEEEEcccccCCC--------------HHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhc
Confidence 2399999877543221 112356777788999999998775221 1
Q ss_pred --CCCCcccHhhHHHhcCCEEEEEecCC
Q 041136 154 --HPYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 154 --~Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
..++.-.+..+.+++||...+..+..
T Consensus 313 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 340 (360)
T 1tw3_A 313 GGALRTREKWDGLAASAGLVVEEVRQLP 340 (360)
T ss_dssp SCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEEeCC
Confidence 11222345678888999988876654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0032 Score=50.83 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=65.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
++.+||-+|=|.=.++..++... .. .+++.|..++..+ .+.+|++.+.-. ...-+..-|+.++.. .+...
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~--~~--~v~gvD~s~~~l~---~a~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~~ 123 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ--AK--KVTFLELDKTVAN---QLKKNLQTLKCSSEQAEVINQSSLDFLK--QPQNQ 123 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CS--EEEEECSCHHHHH---HHHHHHHHTTCCTTTEEEECSCHHHHTT--SCCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHcc--CC--EEEEEECCHHHHH---HHHHHHHHhCCCccceEEEECCHHHHHH--hhccC
Confidence 57899999844444444455442 22 3556775555442 467777655321 223455567776532 12356
Q ss_pred c-ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 97 K-FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 97 ~-FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
+ ||.|+.|.|.. .. ...+++..+.+ ..+|+++|.+.++.....
T Consensus 124 ~~fD~I~~~~~~~-~~------------~~~~~l~~~~~--~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 124 PHFDVVFLDPPFH-FN------------LAEQAISLLCE--NNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCEEEEEECCCSS-SC------------HHHHHHHHHHH--TTCEEEEEEEEEEEESSS
T ss_pred CCCCEEEECCCCC-Cc------------cHHHHHHHHHh--cCccCCCcEEEEEECCCC
Confidence 7 99999999932 11 01233333332 568999999988866543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0097 Score=48.16 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=64.7
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+-.+..+||-||=|.=.++..|++. + ...++ +.|..++..+ .+.+++. ..++ .+...|+..+. +
T Consensus 39 ~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~--~vD~s~~~~~---~a~~~~~---~~~~-~~~~~d~~~~~----~ 103 (243)
T 3bkw_A 39 LPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVL--GLDLSEKMLA---RARAAGP---DTGI-TYERADLDKLH----L 103 (243)
T ss_dssp SCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEE--EEESCHHHHH---HHHHTSC---SSSE-EEEECCGGGCC----C
T ss_pred ccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEE--EEcCCHHHHH---HHHHhcc---cCCc-eEEEcChhhcc----C
Confidence 34557889999997776677778776 2 12454 4554333221 1222211 1133 34455777653 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
....||.|+.++.-.-.. -+..+++.+..+|++||.+.++.
T Consensus 104 ~~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 104 PQDSFDLAYSSLALHYVE----------------DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CTTCEEEEEEESCGGGCS----------------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCceEEEEeccccccc----------------hHHHHHHHHHHhcCcCcEEEEEe
Confidence 467899999987532211 12367888899999999998864
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.025 Score=46.61 Aligned_cols=150 Identities=9% Similarity=0.039 Sum_probs=80.4
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCC--
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLS-- 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~-- 94 (214)
+..+||-+|=|.=.++..|++... + ..+++.|..++..+ .+.+|++.+.-.+-.-+..-|+.+ +... +.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~-~--~~v~gvD~s~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~ 136 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN-G--WYFLATEVDDMCFN---YAKKNVEQNNLSDLIKVVKVPQKTLLMDA--LKEE 136 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH-C--CEEEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCTTCSSTTT--STTC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC-C--CeEEEEECCHHHHH---HHHHHHHHcCCCccEEEEEcchhhhhhhh--hhcc
Confidence 567999999665555556777653 2 34556664444432 477777665322323444557776 2321 22
Q ss_pred -CCcccEEEEcCCCCCCCC---CCCcccH-------HHH-------H--HhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 95 -QMKFDVIIFNFPHAGHSP---PLSEQDT-------NLI-------K--RHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 95 -~~~FD~IiFNFPH~G~~~---~~~~~~~-------~~i-------~--~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
..+||.|+.|.|...... ....++. ..+ + ---.++..++..+..+|+++|.++..+. .
T Consensus 137 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~--~ 214 (254)
T 2h00_A 137 SEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG--K 214 (254)
T ss_dssp CSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEES--S
T ss_pred cCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCC--C
Confidence 257999999999875420 0000000 000 0 0112344555556677888887765432 2
Q ss_pred CCCcccHhhHHHhcCCEEEEEec
Q 041136 155 PYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
+...=.+.++++++|+.-.+..+
T Consensus 215 ~~~~~~~~~~l~~~Gf~~v~~~~ 237 (254)
T 2h00_A 215 KCSLAPLKEELRIQGVPKVTYTE 237 (254)
T ss_dssp TTSHHHHHHHHHHTTCSEEEEEE
T ss_pred hhHHHHHHHHHHHcCCCceEEEE
Confidence 22223566788899997665443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0098 Score=54.11 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=81.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-+|=|.=.|++.||+. ...+ ++.|..++..+ .|.+|++.+.-.+ ..++.-|+.+.-....+..
T Consensus 284 ~~~~~~VLDlgcG~G~~~~~la~~---~~~V--~gvD~s~~al~---~A~~n~~~~~~~~-v~f~~~d~~~~l~~~~~~~ 354 (433)
T 1uwv_A 284 VQPEDRVLDLFCGMGNFTLPLATQ---AASV--VGVEGVPALVE---KGQQNARLNGLQN-VTFYHENLEEDVTKQPWAK 354 (433)
T ss_dssp CCTTCEEEEESCTTTTTHHHHHTT---SSEE--EEEESCHHHHH---HHHHHHHHTTCCS-EEEEECCTTSCCSSSGGGT
T ss_pred CCCCCEEEECCCCCCHHHHHHHhh---CCEE--EEEeCCHHHHH---HHHHHHHHcCCCc-eEEEECCHHHHhhhhhhhc
Confidence 356789999985555555557765 2344 45564444332 4777776543223 3445557766322112344
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.+||.||.|.|-.|.. . .-+.|.. +++++-|+|+ | .|.....-.....+.|+.+...
T Consensus 355 ~~fD~Vv~dPPr~g~~--------~---~~~~l~~---------~~p~~ivyvs-c--~p~tlard~~~l~~~Gy~~~~~ 411 (433)
T 1uwv_A 355 NGFDKVLLDPARAGAA--------G---VMQQIIK---------LEPIRIVYVS-C--NPATLARDSEALLKAGYTIARL 411 (433)
T ss_dssp TCCSEEEECCCTTCCH--------H---HHHHHHH---------HCCSEEEEEE-S--CHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEECCCCccHH--------H---HHHHHHh---------cCCCeEEEEE-C--ChHHHHhhHHHHHHCCcEEEEE
Confidence 6799999999998851 1 1122221 5676666776 2 2322222223445679999999
Q ss_pred ecCCCCCCCCCccc
Q 041136 176 VEFLKQDFPGYHNK 189 (214)
Q Consensus 176 ~~F~~~~yPgY~~~ 189 (214)
.+|| +||.=.|-
T Consensus 412 ~~~d--~Fp~t~Hv 423 (433)
T 1uwv_A 412 AMLD--MFPHTGHL 423 (433)
T ss_dssp EEEC--CSTTSSCC
T ss_pred EEec--cCCCCCeE
Confidence 9997 78866653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.009 Score=51.88 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=68.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH------h-----CCCEEEEccc
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW------S-----RGCLVLHGVN 83 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~------~-----~g~~Vl~~VD 83 (214)
...++.+||-+|-|.=.++.+|++..++...+++ +|..++..+ .+.+|++.+. . .++. +...|
T Consensus 102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~--vD~~~~~~~---~a~~~~~~~~~~~~ln~~~~~~~~v~-~~~~d 175 (336)
T 2b25_A 102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVIS--FEVRKDHHD---LAKKNYKHWRDSWKLSHVEEWPDNVD-FIHKD 175 (336)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEE--EESSHHHHH---HHHHHHHHHHHHHTTTCSSCCCCCEE-EEESC
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEE--EeCCHHHHH---HHHHHHHHhhcccccccccccCCceE-EEECC
Confidence 3467889999998888888889998765445555 564444432 4777777643 1 2333 34457
Q ss_pred cccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 84 VHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 84 At~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+.++.. .+....||.|+.|.|+.-. ++..+..+|++||.+.+..
T Consensus 176 ~~~~~~--~~~~~~fD~V~~~~~~~~~---------------------~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 176 ISGATE--DIKSLTFDAVALDMLNPHV---------------------TLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp TTCCC---------EEEEEECSSSTTT---------------------THHHHGGGEEEEEEEEEEE
T ss_pred hHHccc--ccCCCCeeEEEECCCCHHH---------------------HHHHHHHhcCCCcEEEEEe
Confidence 776531 2445679999998775321 5567889999999987763
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00089 Score=58.48 Aligned_cols=111 Identities=18% Similarity=0.208 Sum_probs=67.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEcccccc-CCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHT-MDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~-L~~~~ 91 (214)
.+.++||.||=|+=.+++.|+++.+ ...++ +.|..+++.+ -+.+++..+ ....+.++. -||.+ |..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~--~vDid~~~i~---~ar~~~~~~~~~~~~~rv~v~~-~Da~~~l~~-- 164 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVV--QCEIDEDVIQ---VSKKFLPGMAIGYSSSKLTLHV-GDGFEFMKQ-- 164 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEE--EEESCHHHHH---HHHHHCHHHHGGGGCTTEEEEE-SCHHHHHHT--
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC-CCEEE--EEECCHHHHH---HHHHHhHHhhcccCCCcEEEEE-CcHHHHHhh--
Confidence 4668999999888888888887642 33454 4454344332 355566553 223455544 46655 322
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.||.|.|..-.. ........||+.+..+|+++|.+.+..
T Consensus 165 --~~~~fD~Ii~d~~~~~~~------------~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 165 --NQDAFDVIITDSSDPMGP------------AESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp --CSSCEEEEEEECC-----------------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCCceEEEECCCCCCCc------------chhhhHHHHHHHHHhccCCCeEEEEec
Confidence 246799999998864321 011234679999999999999987753
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.016 Score=46.79 Aligned_cols=129 Identities=20% Similarity=0.187 Sum_probs=79.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
+..+||-||=|.=.++..|++. ++.|..++..+ .+.+ .++.++ ..|+.++. +....
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~---------~~vD~s~~~~~---~a~~-------~~~~~~-~~d~~~~~----~~~~~ 102 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK---------IGVEPSERMAE---IARK-------RGVFVL-KGTAENLP----LKDES 102 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC---------EEEESCHHHHH---HHHH-------TTCEEE-ECBTTBCC----SCTTC
T ss_pred CCCcEEEeCCCCCHHHHHHHHH---------hccCCCHHHHH---HHHh-------cCCEEE-EcccccCC----CCCCC
Confidence 3789999996655555555432 77776544432 1222 256554 44776653 44578
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC---------------------CC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH---------------------PY 156 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~---------------------Py 156 (214)
||.|+.+..-.-.. -...+++.+..+|++||.+.++..... .+
T Consensus 103 fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (219)
T 1vlm_A 103 FDFALMVTTICFVD----------------DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFF 166 (219)
T ss_dssp EEEEEEESCGGGSS----------------CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCC
T ss_pred eeEEEEcchHhhcc----------------CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccC
Confidence 99999986522110 024577888899999999988743211 13
Q ss_pred CcccHhhHHHhcCCEEEEEecCCCCCCCCCcc
Q 041136 157 NQWNVMGLADKLGLVLKEKVEFLKQDFPGYHN 188 (214)
Q Consensus 157 ~~W~i~~lA~~~gl~l~~~~~F~~~~yPgY~~ 188 (214)
+.-.+..+.+++||...+..... ..|.|..
T Consensus 167 ~~~~l~~~l~~~Gf~~~~~~~~~--~~~p~~~ 196 (219)
T 1vlm_A 167 STEELMDLMRKAGFEEFKVVQTL--FKHPSEL 196 (219)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEEC--CSCGGGC
T ss_pred CHHHHHHHHHHCCCeEEEEeccc--CCCCCcc
Confidence 34457788899999988765443 2344443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.013 Score=47.48 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=78.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~ 94 (214)
-..+.+||-||=|.=.++..|++. + ..+ ++.|..++..+ .+.+|++.+...+...+..-|+.+ +..
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~--~~v--~~vD~s~~~~~---~a~~~~~~~g~~~~v~~~~~d~~~~~~~----- 119 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-G--GRA--ITIEPRADRIE---NIQKNIDTYGLSPRMRAVQGTAPAALAD----- 119 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEESCTTGGGTT-----
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-C--CEE--EEEeCCHHHHH---HHHHHHHHcCCCCCEEEEeCchhhhccc-----
Confidence 466789999996665566667776 2 344 55665444432 466777665433123344457766 322
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
...||.|+.+. +. + .. +++.+..+|+++|.+.+.... +-+...+.+..++.|+.+.+
T Consensus 120 ~~~~D~v~~~~---~~--------------~---~~-~l~~~~~~LkpgG~lv~~~~~--~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 120 LPLPEAVFIGG---GG--------------S---QA-LYDRLWEWLAPGTRIVANAVT--LESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp SCCCSEEEECS---CC--------------C---HH-HHHHHHHHSCTTCEEEEEECS--HHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCCEEEECC---cc--------------c---HH-HHHHHHHhcCCCcEEEEEecC--cccHHHHHHHHHhCCCcEEE
Confidence 24699999765 21 1 22 677888999999999887543 22455667777788888776
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 177 i 177 (204)
T 3njr_A 177 I 177 (204)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00074 Score=59.97 Aligned_cols=112 Identities=14% Similarity=0.199 Sum_probs=70.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
....+||.||-|+=..+..|+++.+ ...|++.-+| +++.+ -+.+|+..+ ....+.++ .-|+.+.-. .
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis--~~~l~---~Ar~~~~~~~~gl~~~rv~~~-~~D~~~~l~--~ 189 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEID--KMVVD---VSKQFFPDVAIGYEDPRVNLV-IGDGVAFLK--N 189 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESC--HHHHH---HHHHHCHHHHGGGGSTTEEEE-ESCHHHHHH--T
T ss_pred CCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECC--HHHHH---HHHHHHHhhccccCCCcEEEE-ECCHHHHHH--h
Confidence 4568999999888888888887643 3455554444 33331 355666554 22234444 447765311 1
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+...+||.||.|.++.-.. ........||+.+..+|++||.+.+.
T Consensus 190 ~~~~~fDlIi~d~~~p~~~------------~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 190 AAEGSYDAVIVDSSDPIGP------------AKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp SCTTCEEEEEECCCCTTSG------------GGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCccEEEECCCCccCc------------chhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 2346799999998753221 01112478999999999999998775
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00081 Score=57.71 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=70.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH----hCCCEEEEcccccc-CCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW----SRGCLVLHGVNVHT-MDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~----~~g~~Vl~~VDAt~-L~~~~ 91 (214)
.+.++||.||=|+=+.+..++++.+ ...+++.-+| +++.+ -+.+|+..+. ...+.++.+ ||.+ |..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid--~~~v~---~ar~~~~~~~~~~~~~rv~v~~~-D~~~~l~~-- 144 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDID--GKVIE---YSKKFLPSIAGKLDDPRVDVQVD-DGFMHIAK-- 144 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESC--HHHHH---HHHHHCHHHHTTTTSTTEEEEES-CSHHHHHT--
T ss_pred CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECC--HHHHH---HHHHHhHhhccccCCCceEEEEC-cHHHHHhh--
Confidence 3578999999888888888887643 3355554444 33332 3556665542 223455544 7665 322
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.||.|.|+..... . ......||+.+..+|+++|.+.+..
T Consensus 145 --~~~~fD~Ii~d~~~~~~~~---~---------~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 145 --SENQYDVIMVDSTEPVGPA---V---------NLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp --CCSCEEEEEESCSSCCSCC---C---------CCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred --CCCCeeEEEECCCCCCCcc---h---------hhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 1467999999998743210 0 0023568899999999999987763
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0043 Score=51.46 Aligned_cols=150 Identities=15% Similarity=0.098 Sum_probs=88.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHHHHhCC--CEEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQSLWSRG--CLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g--~~Vl~~VDAt~L~~~~~~ 93 (214)
.++.+||-||=|.=.++..||+... ....|+.|.. +.+.+.=..+.+++ +..| -..+..-|+..+... +
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~---~~~v~GvD~s~~~ml~~A~~A~~~~---~~~~~~~v~~~~~d~~~l~~~--~ 94 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQ---NTFYIGIDPVKENLFDISKKIIKKP---SKGGLSNVVFVIAAAESLPFE--L 94 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCT---TEEEEEECSCCGGGHHHHHHHTSCG---GGTCCSSEEEECCBTTBCCGG--G
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHHH---HHcCCCCeEEEEcCHHHhhhh--c
Confidence 4677899999655556666776542 4556677743 44421000012222 2223 245677888888421 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE--EecCC----------CC--CCcc
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV--TLRDD----------HP--YNQW 159 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V--Tl~~~----------~P--y~~W 159 (214)
...+|.|..|||..- .....+.-...+|+.+..+|+|||.+.+ ++.+. .| ...|
T Consensus 95 -~d~v~~i~~~~~~~~-----------~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (225)
T 3p2e_A 95 -KNIADSISILFPWGT-----------LLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAY 162 (225)
T ss_dssp -TTCEEEEEEESCCHH-----------HHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHH
T ss_pred -cCeEEEEEEeCCCcH-----------HhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhh
Confidence 267999999998321 0011111134688899999999999988 22221 11 2234
Q ss_pred ----cHhhHHHhcCCEEEEEecCCCCCCCCC
Q 041136 160 ----NVMGLADKLGLVLKEKVEFLKQDFPGY 186 (214)
Q Consensus 160 ----~i~~lA~~~gl~l~~~~~F~~~~yPgY 186 (214)
.+..+.+++||.+.+...|+......+
T Consensus 163 ~~~~el~~~l~~aGf~v~~~~~~~~~~~~~~ 193 (225)
T 3p2e_A 163 FLSEQYKAELSNSGFRIDDVKELDNEYVKQF 193 (225)
T ss_dssp HHSHHHHHHHHHHTCEEEEEEEECHHHHTTC
T ss_pred cchHHHHHHHHHcCCCeeeeeecCHHHHHHH
Confidence 367788889999999888885533333
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0023 Score=50.71 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=69.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++.. . .++++ .|..+...+ .+.+++.. ..++.+ ...|+.++. +...
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~-~-~~v~~--~D~s~~~~~---~a~~~~~~--~~~i~~-~~~d~~~~~----~~~~ 106 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGG-F-PNVTS--VDYSSVVVA---AMQACYAH--VPQLRW-ETMDVRKLD----FPSA 106 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTT-C-CCEEE--EESCHHHHH---HHHHHTTT--CTTCEE-EECCTTSCC----SCSS
T ss_pred CCCCeEEEECCCCcHHHHHHHHcC-C-CcEEE--EeCCHHHHH---HHHHhccc--CCCcEE-EEcchhcCC----CCCC
Confidence 678899999977666666677762 2 25555 453333321 23333332 123444 455777762 4567
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||.|+.+.|-..........- ..-..+..-+..+++.+..+|+++|.+.+..
T Consensus 107 ~fD~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 107 SFDVVLEKGTLDALLAGERDPW-TVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp CEEEEEEESHHHHHTTTCSCTT-SCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccEEEECcchhhhcccccccc-ccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 8999998866321000000000 0001345667889999999999999997773
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.01 Score=47.71 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=65.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L~~~~ 91 (214)
....+||-||=|.=.++..|++..+ . .-.|+.|..++..+ .+.+++.... ..++. +..-|+..+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~--~~v~gvD~s~~~~~---~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~--- 97 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS-F--EQITGVDVSYSVLE---RAKDRLKIDRLPEMQRKRIS-LFQSSLVYRD--- 97 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT-C--CEEEEEESCHHHHH---HHHHHHTGGGSCHHHHTTEE-EEECCSSSCC---
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC-C--CEEEEEECCHHHHH---HHHHHHHhhccccccCcceE-EEeCcccccc---
Confidence 4678999999666667777887642 2 34455664444332 3444443221 11333 3444664432
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+...+||.|+.+..-.-. ...-+..+++.+..+|++||.+.++..
T Consensus 98 -~~~~~fD~V~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 98 -KRFSGYDAATVIEVIEHL--------------DENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp -GGGTTCSEEEEESCGGGC--------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred -cccCCCCEEEEHHHHHhC--------------CHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 345789999987543211 122466788999999999996666644
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0076 Score=48.96 Aligned_cols=112 Identities=9% Similarity=0.024 Sum_probs=68.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCC-CC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHP-TL 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~-~~ 93 (214)
....++||-||=|.=..+..||+.++.+..| |+.|..++..+ .+.+|++.+.-.+..-+..-|+.+ +.... .+
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARL--LTMEINPDCAA---ITQQMLNFAGLQDKVTILNGASQDLIPQLKKKY 130 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEE--EEEESCHHHHH---HHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTS
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEE--EEEeCChHHHH---HHHHHHHHcCCCCceEEEECCHHHHHHHHHHhc
Confidence 3467899999977666677788876544444 45564444432 477777766432223345557755 22211 12
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.|+.+.++... .-...++..+ .+|++||.+.+.
T Consensus 131 ~~~~fD~V~~d~~~~~~----------------~~~~~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRY----------------LPDTLLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp CCCCCSEEEECSCGGGH----------------HHHHHHHHHT-TCCCTTCEEEES
T ss_pred CCCceEEEEEcCCcccc----------------hHHHHHHHhc-cccCCCeEEEEe
Confidence 23689999998654221 1123566677 999999998775
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0029 Score=51.70 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=69.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC-C
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-S 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-~ 94 (214)
..+..+||-||-|.=.++..|++.++ +..+ ++.|..++..+ .+.++++.+...+...+...|+.+.-. .+ .
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~ 123 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALP-EATI--VSIERDERRYE---EAHKHVKALGLESRIELLFGDALQLGE--KLEL 123 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCT-TCEE--EEECCCHHHHH---HHHHHHHHTTCTTTEEEECSCGGGSHH--HHTT
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCC-CCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEEEECCHHHHHH--hccc
Confidence 34678999999877677777888874 3344 55665444432 366666554322224445567765311 11 1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...||.|+.+.|.. ....+++.+..+|++||.+.+.
T Consensus 124 ~~~fD~I~~~~~~~-------------------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 124 YPLFDVLFIDAAKG-------------------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp SCCEEEEEEEGGGS-------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCccEEEECCCHH-------------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 36799999988742 1346778889999999999886
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0091 Score=51.85 Aligned_cols=136 Identities=11% Similarity=0.105 Sum_probs=83.6
Q ss_pred CCCC-CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTN-NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~-~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
++++ ..+||-||=|.=.++..|++.+. ++.+|.+|..+.+. .+.+++......+-..+..-|+.+... +
T Consensus 175 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~~~~~~----~a~~~~~~~~~~~~v~~~~~d~~~~~~---~ 244 (352)
T 3mcz_A 175 GVFARARTVIDLAGGHGTYLAQVLRRHP---QLTGQIWDLPTTRD----AARKTIHAHDLGGRVEFFEKNLLDARN---F 244 (352)
T ss_dssp GGGTTCCEEEEETCTTCHHHHHHHHHCT---TCEEEEEECGGGHH----HHHHHHHHTTCGGGEEEEECCTTCGGG---G
T ss_pred CCcCCCCEEEEeCCCcCHHHHHHHHhCC---CCeEEEEECHHHHH----HHHHHHHhcCCCCceEEEeCCcccCcc---c
Confidence 3445 88999999776677777998874 35667778733322 355555443211223445556655321 1
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec--C-------------------
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR--D------------------- 152 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~--~------------------- 152 (214)
....||.|+.+.--.-. ..+-...+++.+..+|+|||.+.|.-. .
T Consensus 245 ~~~~~D~v~~~~vlh~~--------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 310 (352)
T 3mcz_A 245 EGGAADVVMLNDCLHYF--------------DAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVN 310 (352)
T ss_dssp TTCCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHH
T ss_pred CCCCccEEEEecccccC--------------CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhh
Confidence 23459999987643322 112345677888999999999876521 1
Q ss_pred ---CCCCCcccHhhHHHhcCCEEEE
Q 041136 153 ---DHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 153 ---~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
+..++.-++..+.+++||.+.+
T Consensus 311 ~~~~~~~t~~e~~~ll~~aGf~~~~ 335 (352)
T 3mcz_A 311 TNHGELHPTPWIAGVVRDAGLAVGE 335 (352)
T ss_dssp STTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred CCCCCcCCHHHHHHHHHHCCCceee
Confidence 1122333466788899999887
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00067 Score=59.69 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=69.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+..+||.||-|+=.++..|+++.+ ...+++.-+|. ++.+ -+.+|+..+ ....+.++. -|+.+.-.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~--~~l~---~ar~~~~~~~~~~~~~~v~~~~-~D~~~~l~--- 184 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDE--TVIE---VSKIYFKNISCGYEDKRVNVFI-EDASKFLE--- 184 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCH--HHHH---HHHHHCTTTSGGGGSTTEEEEE-SCHHHHHH---
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCH--HHHH---HHHHHHHhhccccCCCcEEEEE-ccHHHHHh---
Confidence 3568999999888888888887643 34555554443 3331 355555442 222344444 46654211
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH-HHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL-EAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL-~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
....+||.||.|.|+.-.. ...|. ..|++.+..+|++||.+.+..
T Consensus 185 ~~~~~fDvIi~d~~~p~~~-------------~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 185 NVTNTYDVIIVDSSDPIGP-------------AETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp HCCSCEEEEEEECCCSSSG-------------GGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCCceEEEECCcCCCCc-------------chhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 1136799999998743210 11233 788999999999999998764
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.009 Score=50.14 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=78.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=.++.++++. + ..++++-.|... +. .+.+|++...- .+.+. .-|+.+. +...
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~-v~----~a~~n~~~~~~-~v~~~-~~d~~~~-----~~~~ 183 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMV-LP----QAEANAKRNGV-RPRFL-EGSLEAA-----LPFG 183 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGG-HH----HHHHHHHHTTC-CCEEE-ESCHHHH-----GGGC
T ss_pred CCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHH-HH----HHHHHHHHcCC-cEEEE-ECChhhc-----CcCC
Confidence 56789999997766666667764 3 256665554422 21 35566654321 13333 2344431 2346
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
+||.|+.|.|. ..+..++..+..+|+++|.+.++-.. +.+.-.+..+.+++||.+.+..
T Consensus 184 ~fD~Vv~n~~~-------------------~~~~~~l~~~~~~LkpgG~lils~~~--~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 184 PFDLLVANLYA-------------------ELHAALAPRYREALVPGGRALLTGIL--KDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp CEEEEEEECCH-------------------HHHHHHHHHHHHHEEEEEEEEEEEEE--GGGHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEECCcH-------------------HHHHHHHHHHHHHcCCCCEEEEEeec--cCCHHHHHHHHHHCCCEEEEEe
Confidence 79999999753 12467788899999999999876221 1234567778888999987753
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00076 Score=58.96 Aligned_cols=113 Identities=16% Similarity=0.264 Sum_probs=71.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccC-CCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTM-DRH 90 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L-~~~ 90 (214)
....+||.||=|+=.+++.|+++.+ ..++++.-+| +++.+ -+.+++..+. ...+.+ +.-|+.+. ..
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid--~~~i~---~ar~~~~~~~~~~~~~~~v~~-~~~D~~~~l~~- 147 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDID--GELVE---VAKRHMPEWHQGAFDDPRAVL-VIDDARAYLER- 147 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESC--HHHHH---HHHHHCHHHHTTGGGCTTEEE-EESCHHHHHHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECC--HHHHH---HHHHHhHhhccccccCCceEE-EEchHHHHHHh-
Confidence 3568999999888888888988653 3355555444 33332 3556665542 223444 44477652 21
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHH-HHHHHHHHHhccCCCCEEEEEe
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNL-LEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~L-L~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...+||.||.+.|+.....+ . ...| ...||+.+..+|++||.+.+..
T Consensus 148 ---~~~~fD~Ii~d~~~~~~~~~---~-------~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 148 ---TEERYDVVIIDLTDPVGEDN---P-------ARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ---CCCCEEEEEEECCCCBSTTC---G-------GGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ---cCCCccEEEECCCCcccccC---c-------chhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 24679999999887431000 0 1112 5789999999999999987763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0055 Score=53.88 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=74.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.++||++|=||-+-++.++++.+ ...|+.--+|..- ++.++| -..-|-..+..-.+.|+++ ||.+.-+ -..
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~-lp~~~~~~~~dpRv~v~~~-Dg~~~l~---~~~ 155 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQY-LPNHNAGSYDDPRFKLVID-DGVNFVN---QTS 155 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHH-CHHHHTTGGGCTTEEEEES-CTTTTTS---CSS
T ss_pred CCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhc-CccccccccCCCcEEEEec-hHHHHHh---hcc
Confidence 4678999999999999999988753 3567777677532 333344 1111222234344666655 6665332 235
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
++||.||-+-|...+.. ..-.-..||+.++..|+++|.+.+-
T Consensus 156 ~~yDvIi~D~~dp~~~~------------~~L~t~eFy~~~~~~L~p~Gv~v~q 197 (294)
T 3o4f_A 156 QTFDVIISDCTDPIGPG------------ESLFTSAFYEGCKRCLNPGGIFVAQ 197 (294)
T ss_dssp CCEEEEEESCCCCCCTT------------CCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred ccCCEEEEeCCCcCCCc------------hhhcCHHHHHHHHHHhCCCCEEEEe
Confidence 78999999998764321 1113468999999999999987653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.011 Score=45.46 Aligned_cols=133 Identities=13% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.. . ..++.|..++..+ .+.++ ..++.+.. .| + .+.
T Consensus 14 ~~~~~~~vLDiG~G~G~~~~~l~~~~----~-~v~~vD~s~~~~~---~a~~~-----~~~v~~~~-~d---~----~~~ 72 (170)
T 3i9f_A 14 FEGKKGVIVDYGCGNGFYCKYLLEFA----T-KLYCIDINVIALK---EVKEK-----FDSVITLS-DP---K----EIP 72 (170)
T ss_dssp HSSCCEEEEEETCTTCTTHHHHHTTE----E-EEEEECSCHHHHH---HHHHH-----CTTSEEES-SG---G----GSC
T ss_pred CcCCCCeEEEECCCCCHHHHHHHhhc----C-eEEEEeCCHHHHH---HHHHh-----CCCcEEEe-CC---C----CCC
Confidence 45678899999977767777788765 1 4556664443331 23322 22444443 34 1 245
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC------C----CCcccHhhH
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------P----YNQWNVMGL 164 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------P----y~~W~i~~l 164 (214)
..+||.|+.+....-.. + ...+++.+..+|+++|.+.++-.... | ++...+..+
T Consensus 73 ~~~~D~v~~~~~l~~~~----~------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (170)
T 3i9f_A 73 DNSVDFILFANSFHDMD----D------------KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGW 136 (170)
T ss_dssp TTCEEEEEEESCSTTCS----C------------HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHH
T ss_pred CCceEEEEEccchhccc----C------------HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHH
Confidence 57899999987654321 0 23677888899999999977743211 1 233346666
Q ss_pred HHhcCCEEEEEecCCCCCCCCC
Q 041136 165 ADKLGLVLKEKVEFLKQDFPGY 186 (214)
Q Consensus 165 A~~~gl~l~~~~~F~~~~yPgY 186 (214)
.+ ||...+...+.+..|.=+
T Consensus 137 l~--Gf~~~~~~~~~~~~~~l~ 156 (170)
T 3i9f_A 137 FS--NFVVEKRFNPTPYHFGLV 156 (170)
T ss_dssp TT--TEEEEEEECSSTTEEEEE
T ss_pred Hh--CcEEEEccCCCCceEEEE
Confidence 65 999999888776655433
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.014 Score=46.86 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHH-HHHHhCC--CEEEEccccccCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHL-QSLWSRG--CLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni-~~L~~~g--~~Vl~~VDAt~L~~~~~ 92 (214)
-..+.+||-||=|.=.++..|++.+. + .-.|+.|..++..+. +..+. +..+..+ -..+...|+.++.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p-~--~~v~gvD~s~~~l~~---~~~~a~~~~~~~~~~~v~~~~~d~~~l~---- 94 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNP-S--RLVVALDADKSRMEK---ISAKAAAKPAKGGLPNLLYLWATAERLP---- 94 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCT-T--EEEEEEESCGGGGHH---HHHHHTSCGGGTCCTTEEEEECCSTTCC----
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCC-C--CEEEEEECCHHHHHH---HHHHHHHhhhhcCCCceEEEecchhhCC----
Confidence 45678999999666566666888752 2 445566644432211 11111 1122223 3445566888764
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH---HHHHHHHHhccCCCCEEEEEecCC-----------CCC--
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL---EAFLKNGREMLGEGGEVHVTLRDD-----------HPY-- 156 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL---~~Ff~Sa~~lL~~~G~i~VTl~~~-----------~Py-- 156 (214)
+.... |.|+..+|+.. .++..+ ..+++.+..+|+|||.+.++.... .|.
T Consensus 95 ~~~~~-d~v~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (218)
T 3mq2_A 95 PLSGV-GELHVLMPWGS--------------LLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPT 159 (218)
T ss_dssp SCCCE-EEEEEESCCHH--------------HHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCC
T ss_pred CCCCC-CEEEEEccchh--------------hhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccc
Confidence 33344 88887777421 122333 788899999999999999875321 110
Q ss_pred Ccc---cHhhHHHhcCCEEEEEecCCCC
Q 041136 157 NQW---NVMGLADKLGLVLKEKVEFLKQ 181 (214)
Q Consensus 157 ~~W---~i~~lA~~~gl~l~~~~~F~~~ 181 (214)
..| .+..+.+.+|+.+.+...++..
T Consensus 160 ~~~~~~~l~~~l~~aGf~i~~~~~~~~~ 187 (218)
T 3mq2_A 160 PDSADEWLAPRYAEAGWKLADCRYLEPE 187 (218)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEECHH
T ss_pred hHHHHHHHHHHHHHcCCCceeeeccchh
Confidence 111 2556788899999887766544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=47.20 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=74.5
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+.+.....+||-||-|.=.++..|+ ..+++.-.+.. ++.+ ...|+.++.
T Consensus 62 l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~--------------------~~~~-~~~d~~~~~---- 110 (215)
T 2zfu_A 62 LRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL--------------------DPRV-TVCDMAQVP---- 110 (215)
T ss_dssp HHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS--------------------STTE-EESCTTSCS----
T ss_pred HhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC--------------------CceE-EEeccccCC----
Confidence 3455678899999965544444442 35666555443 2333 334666543
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVL 172 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l 172 (214)
+....||.|+.++...- . + +..+++.+..+|++||.+.|+-......+.-.+..+.+++||.+
T Consensus 111 ~~~~~fD~v~~~~~l~~-~------~----------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~ 173 (215)
T 2zfu_A 111 LEDESVDVAVFCLSLMG-T------N----------IRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKI 173 (215)
T ss_dssp CCTTCEEEEEEESCCCS-S------C----------HHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEE
T ss_pred CCCCCEeEEEEehhccc-c------C----------HHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEE
Confidence 44678999999876431 1 0 24567778899999999988743322235566888999999998
Q ss_pred EEEe
Q 041136 173 KEKV 176 (214)
Q Consensus 173 ~~~~ 176 (214)
....
T Consensus 174 ~~~~ 177 (215)
T 2zfu_A 174 VSKD 177 (215)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8743
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0082 Score=52.85 Aligned_cols=107 Identities=22% Similarity=0.244 Sum_probs=69.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-||-|.=.++..+++. + ...++|.-.+ +.+. .+.++++...-.....+..-|+.++. +.
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s--~~~~----~a~~~~~~~~~~~~i~~~~~d~~~~~----~~ 128 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQS--EILY----QAMDIIRLNKLEDTITLIKGKIEEVH----LP 128 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESS--THHH----HHHHHHHHTTCTTTEEEEESCTTTSC----CS
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChH--HHHH----HHHHHHHHcCCCCcEEEEEeeHHHhc----CC
Confidence 3466789999997665566667775 3 3466666554 3332 36666655432233445566777663 44
Q ss_pred CCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 95 QMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 95 ~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
..+||.||.+. ++... +...+..++..+..+|++||.+.
T Consensus 129 ~~~~D~Ivs~~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 129 VEKVDVIISEWMGYFLL--------------FESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCEEEEEECCCBTTBT--------------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCcEEEEEEcCchhhcc--------------CHHHHHHHHHHHHhhcCCCcEEE
Confidence 56899999997 44332 22356678888899999999975
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0019 Score=49.48 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||-+|=|.=.++..|++.. .+ .++.|..++..+ .+.+|++.... ++. ++.-|+.+......-...+
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~---~~--v~~vD~~~~~~~---~a~~~~~~~~~-~~~-~~~~d~~~~~~~~~~~~~~ 110 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEG---WE--AVLVEKDPEAVR---LLKENVRRTGL-GAR-VVALPVEVFLPEAKAQGER 110 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTT---CE--EEEECCCHHHHH---HHHHHHHHHTC-CCE-EECSCHHHHHHHHHHTTCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCC---Ce--EEEEeCCHHHHH---HHHHHHHHcCC-ceE-EEeccHHHHHHhhhccCCc
Confidence 67899999966555666677753 24 677776555442 46777766543 444 4455666521100011247
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
||.|+.|.|.. .. ..+++..+.+ ..+|+++|.+.++....
T Consensus 111 ~D~i~~~~~~~-~~-------------~~~~~~~~~~--~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 111 FTVAFMAPPYA-MD-------------LAALFGELLA--SGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp EEEEEECCCTT-SC-------------TTHHHHHHHH--HTCEEEEEEEEEEEETT
T ss_pred eEEEEECCCCc-hh-------------HHHHHHHHHh--hcccCCCcEEEEEeCCc
Confidence 99999999976 21 1123333333 68999999998875543
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.015 Score=44.59 Aligned_cols=123 Identities=9% Similarity=0.080 Sum_probs=76.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-+|=|.=.++..|++ ...+++ +.|..++..+ .+.+|++.+...+ .-+...|+.+. +.
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~--~vD~~~~~~~---~a~~~~~~~~~~~-~~~~~~d~~~~-----~~ 97 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK---RCKFVY--AIDYLDGAIE---VTKQNLAKFNIKN-CQIIKGRAEDV-----LD 97 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT---TSSEEE--EEECSHHHHH---HHHHHHHHTTCCS-EEEEESCHHHH-----GG
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh---cCCeEE--EEeCCHHHHH---HHHHHHHHcCCCc-EEEEECCcccc-----cc
Confidence 446778999999777677777877 234555 4554344332 3555655443222 33445565541 33
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
...||.|+.+.| . .+..+++.+..+ ++|.+.++... +.....+.++.++.|+.+..
T Consensus 98 ~~~~D~i~~~~~---~-----------------~~~~~l~~~~~~--~gG~l~~~~~~--~~~~~~~~~~l~~~g~~~~~ 153 (183)
T 2yxd_A 98 KLEFNKAFIGGT---K-----------------NIEKIIEILDKK--KINHIVANTIV--LENAAKIINEFESRGYNVDA 153 (183)
T ss_dssp GCCCSEEEECSC---S-----------------CHHHHHHHHHHT--TCCEEEEEESC--HHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCcEEEECCc---c-----------------cHHHHHHHHhhC--CCCEEEEEecc--cccHHHHHHHHHHcCCeEEE
Confidence 368999999999 1 123455556666 99999887532 23456678888889987765
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 154 ~ 154 (183)
T 2yxd_A 154 V 154 (183)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0022 Score=51.47 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=70.8
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+-....+||-||=|.=.++..|++.. --.|+.|..++..+ .+.+++. ..+..-++..|+.++.
T Consensus 47 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~---~a~~~~~---~~~~~~~~~~d~~~~~----- 110 (216)
T 3ofk_A 47 LSSGAVSNGLEIGCAAGAFTEKLAPHC-----KRLTVIDVMPRAIG---RACQRTK---RWSHISWAATDILQFS----- 110 (216)
T ss_dssp TTTSSEEEEEEECCTTSHHHHHHGGGE-----EEEEEEESCHHHHH---HHHHHTT---TCSSEEEEECCTTTCC-----
T ss_pred cccCCCCcEEEEcCCCCHHHHHHHHcC-----CEEEEEECCHHHHH---HHHHhcc---cCCCeEEEEcchhhCC-----
Confidence 345667899999977777777787763 24555665444331 2333332 2334455666887765
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...+||.|+.+....-.. +.+.+..+++.+..+|++||.+.++..
T Consensus 111 ~~~~fD~v~~~~~l~~~~-------------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 111 TAELFDLIVVAEVLYYLE-------------DMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp CSCCEEEEEEESCGGGSS-------------SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCccEEEEccHHHhCC-------------CHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 257899999985533221 234567789999999999999988643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0067 Score=50.11 Aligned_cols=105 Identities=10% Similarity=0.135 Sum_probs=67.7
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCCCCCCCCc
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
..+||-||-|.=..+..||+.++++..| |+.|..++..+ .+.+|++...-. +..-+..-||.++-. .+...+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~g~~~~~i~~~~gda~~~l~--~~~~~~ 129 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTL--TCIDPESEHQR---QAKALFREAGYSPSRVRFLLSRPLDVMS--RLANDS 129 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEE--EEECSCHHHHH---HHHHHHHHTTCCGGGEEEECSCHHHHGG--GSCTTC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHcCCCcCcEEEEEcCHHHHHH--HhcCCC
Confidence 3499999988877888899987544444 56665454442 466777664422 223444556665422 133578
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+.+.+... ...||+.+..+|++||.|.+.
T Consensus 130 fD~V~~d~~~~~-------------------~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 130 YQLVFGQVSPMD-------------------LKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp EEEEEECCCTTT-------------------HHHHHHHHHHHEEEEEEEEET
T ss_pred cCeEEEcCcHHH-------------------HHHHHHHHHHHcCCCcEEEEe
Confidence 999998753210 124788899999999998874
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.011 Score=49.18 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=68.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~~ 94 (214)
.....+||-||=|.=..+..||+.++.+..| |+.|..++..+ .+.+|++.+.-.+...+..-|+.+ +... ..
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v--~~vD~s~~~~~---~a~~~~~~~g~~~~v~~~~~d~~~~l~~~--~~ 133 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQL--LTLEADAHHAQ---VARENLQLAGVDQRVTLREGPALQSLESL--GE 133 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEE--EEEECCHHHHH---HHHHHHHHTTCTTTEEEEESCHHHHHHTC--CS
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHHhc--CC
Confidence 4567899999977767777789887534444 55564444331 466676655432233445557765 3221 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.+.+... ...+|+.+..+|++||.|.+.
T Consensus 134 ~~~fD~V~~d~~~~~-------------------~~~~l~~~~~~LkpGG~lv~~ 169 (248)
T 3tfw_A 134 CPAFDLIFIDADKPN-------------------NPHYLRWALRYSRPGTLIIGD 169 (248)
T ss_dssp CCCCSEEEECSCGGG-------------------HHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCeEEEEECCchHH-------------------HHHHHHHHHHhcCCCeEEEEe
Confidence 358999999764211 124788889999999988765
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0078 Score=51.72 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=72.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-+|-|.=.++.+|++. + ..+++| .|..++..+ .+.+|++.+.-.+-..++.-|+.+. +. .+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~--vDis~~al~---~A~~n~~~~~l~~~v~~~~~D~~~~-----~~-~~ 189 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-S-DAIVFA--TDVSSKAVE---IARKNAERHGVSDRFFVRKGEFLEP-----FK-EK 189 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-S-SCEEEE--EESCHHHHH---HHHHHHHHTTCTTSEEEEESSTTGG-----GG-GG
T ss_pred CCCEEEEEeCchhHHHHHHHHC-C-CCEEEE--EECCHHHHH---HHHHHHHHcCCCCceEEEECcchhh-----cc-cc
Confidence 5679999998877788888887 3 445554 553333331 4777877664333244455566652 11 46
Q ss_pred c---cEEEEcCCCCCCCCCCCcccHHHHHH--hHHHH-----HHHHHHHH-hccCCCCEEEEEec
Q 041136 98 F---DVIIFNFPHAGHSPPLSEQDTNLIKR--HKNLL-----EAFLKNGR-EMLGEGGEVHVTLR 151 (214)
Q Consensus 98 F---D~IiFNFPH~G~~~~~~~~~~~~i~~--n~~LL-----~~Ff~Sa~-~lL~~~G~i~VTl~ 151 (214)
| |.||.|.|.++... .-..+ ++. ...|. ..|++.+. .+|++||.+.+.+-
T Consensus 190 f~~~D~IvsnPPyi~~~~-~l~~~---v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 190 FASIEMILSNPPYVKSSA-HLPKD---VLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp TTTCCEEEECCCCBCGGG-SCTTS---CCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred cCCCCEEEEcCCCCCccc-ccChh---hccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 8 99999999987532 00000 010 11121 16888888 99999999998743
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.011 Score=48.84 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=64.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++.. .++ |+.|..++..+ .+.+++. ++.++ ..|+.++. + ..
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v--~gvD~s~~~~~---~a~~~~~-----~~~~~-~~d~~~~~----~-~~ 109 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF---GTV--EGLELSADMLA---IARRRNP-----DAVLH-HGDMRDFS----L-GR 109 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS---SEE--EEEESCHHHHH---HHHHHCT-----TSEEE-ECCTTTCC----C-SC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC---CeE--EEEECCHHHHH---HHHhhCC-----CCEEE-ECChHHCC----c-cC
Confidence 456899999977777777787752 244 55664333331 2333221 45444 45777653 2 57
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+||.|+.++.-+..- .+.+-+..+++.+..+|+|||.+.|+
T Consensus 110 ~fD~v~~~~~~l~~~------------~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 110 RFSAVTCMFSSIGHL------------AGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CEEEEEECTTGGGGS------------CHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CcCEEEEcCchhhhc------------CCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 899999876311110 12445678899999999999999885
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0077 Score=51.21 Aligned_cols=109 Identities=11% Similarity=0.136 Sum_probs=67.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+++.+||-||=|.=.++.+|++.+.. .+.-.|+.|..+++.+ .|.++++......-.-+..-|+.++. + .
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~-~~~~v~gvD~s~~ml~---~A~~~~~~~~~~~~v~~~~~D~~~~~----~--~ 138 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHH-DNCKIIAIDNSPAMIE---RCRRHIDAYKAPTPVDVIEGDIRDIA----I--E 138 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCS-SSCEEEEEESCHHHHH---HHHHHHHTSCCSSCEEEEESCTTTCC----C--C
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCC-CCCEEEEEECCHHHHH---HHHHHHHhhccCceEEEeeccccccc----c--c
Confidence 57889999995444455558887642 3455677885555442 46666655443222334445777654 2 4
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.||.|+.|+=-.-. ...-...+++.+..+|+|||.+.|+
T Consensus 139 ~~d~v~~~~~l~~~--------------~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 139 NASMVVLNFTLQFL--------------EPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp SEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccceeeeeeeec--------------CchhHhHHHHHHHHHcCCCcEEEEE
Confidence 59999998732111 0111235677788999999998776
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0063 Score=53.69 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-||=|.=.++..|++. + ...++|.-.. +.+. .+.++++...-.+...+..-|+.++. +...
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s--~~l~----~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 132 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS--SISD----YAVKIVKANKLDHVVTIIKGKVEEVE----LPVE 132 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS--THHH----HHHHHHHHTTCTTTEEEEESCTTTCC----CSSS
T ss_pred CCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH--HHHH----HHHHHHHHcCCCCcEEEEECcHHHcc----CCCC
Confidence 45789999995554556667776 3 3467665554 3332 36666665543344566677888763 4457
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
+||.||.+.+..... +...+..++..+..+|+|||.+.
T Consensus 133 ~fD~Iis~~~~~~l~-------------~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 133 KVDIIISEWMGYCLF-------------YESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp CEEEEEECCCBBTBT-------------BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceEEEEEcccccccc-------------CchhHHHHHHHHHHhCCCCCEEc
Confidence 899999998654321 12245677888899999999964
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0097 Score=48.15 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||=|.=.++..|++. ...|+.|..++..+ .+.+++.... .++.+ ...|+.++. +.
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~------~~v~~vD~s~~~~~---~a~~~~~~~~-~~~~~-~~~d~~~~~----~~- 94 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH------YEVTGVDLSEEMLE---IAQEKAMETN-RHVDF-WVQDMRELE----LP- 94 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT------SEEEEEESCHHHHH---HHHHHHHHTT-CCCEE-EECCGGGCC----CS-
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC------CeEEEEECCHHHHH---HHHHhhhhcC-CceEE-EEcChhhcC----CC-
Confidence 345689999997666666667654 23556665444332 3555554332 23444 445777653 22
Q ss_pred CcccEEEEcC---CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNF---PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNF---PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.+||.|+.++ .|.. +..-+..+++.+..+|++||.+.++.
T Consensus 95 ~~fD~v~~~~~~~~~~~---------------~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQ---------------TEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp SCEEEEEECTTGGGGCC---------------SHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEEeCCchhhcC---------------CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 6799999875 3332 12345677889999999999998754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0071 Score=48.83 Aligned_cols=110 Identities=11% Similarity=0.107 Sum_probs=63.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||-+|=|.=.++..++... .. .+|+.|..++..+ .+.+|++.+.-.+ ..+..-|+.+... ....+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~--~~--~V~~vD~s~~~l~---~a~~~~~~~~~~~-v~~~~~D~~~~~~---~~~~~ 122 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY--AA--GATLIEMDRAVSQ---QLIKNLATLKAGN-ARVVNSNAMSFLA---QKGTP 122 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT--CS--EEEEECSCHHHHH---HHHHHHHHTTCCS-EEEECSCHHHHHS---SCCCC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC--CC--EEEEEECCHHHHH---HHHHHHHHcCCCc-EEEEECCHHHHHh---hcCCC
Confidence 56899998855444444455542 12 4566775555442 4666776553222 3345567766321 13467
Q ss_pred ccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 98 FDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 98 FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
||.|+.|.| |.+. ..+++..+.+ ..+|+++|.+.++.....
T Consensus 123 fD~V~~~~p~~~~~--------------~~~~l~~l~~--~~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 123 HNIVFVDPPFRRGL--------------LEETINLLED--NGWLADEALIYVESEVEN 164 (202)
T ss_dssp EEEEEECCSSSTTT--------------HHHHHHHHHH--TTCEEEEEEEEEEEEGGG
T ss_pred CCEEEECCCCCCCc--------------HHHHHHHHHh--cCccCCCcEEEEEECCCc
Confidence 999999999 4221 1233333332 456999999988866533
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.033 Score=49.01 Aligned_cols=108 Identities=13% Similarity=0.276 Sum_probs=69.8
Q ss_pred ccCCCCCCeEEEEecCchhHHHHH-HHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCL-ARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
+.....+++||.||=|.-.++..+ |+..+ .. .|++|..++..+ .|.++++...-.++ -+..-||.++.
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~g--a~--V~gIDis~~~l~---~Ar~~~~~~gl~~v-~~v~gDa~~l~--- 185 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYG--MR--VNVVEIEPDIAE---LSRKVIEGLGVDGV-NVITGDETVID--- 185 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTC--CE--EEEEESSHHHHH---HHHHHHHHHTCCSE-EEEESCGGGGG---
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccC--CE--EEEEECCHHHHH---HHHHHHHhcCCCCe-EEEECchhhCC---
Confidence 345578999999999987777544 44342 34 555665455442 47777766543233 34455777753
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
...||.|+...- .. -...+++.+..+|+|||.+.+....+
T Consensus 186 ---d~~FDvV~~~a~---~~----------------d~~~~l~el~r~LkPGG~Lvv~~~~~ 225 (298)
T 3fpf_A 186 ---GLEFDVLMVAAL---AE----------------PKRRVFRNIHRYVDTETRIIYRTYTG 225 (298)
T ss_dssp ---GCCCSEEEECTT---CS----------------CHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred ---CCCcCEEEECCC---cc----------------CHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence 467999987431 10 02356777889999999999886544
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.016 Score=45.41 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=72.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++.. .+++.|..++..+. ..++.++ .-|+.+ .+...
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~------~v~gvD~s~~~~~~------------~~~~~~~-~~d~~~-----~~~~~ 77 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN------TVVSTDLNIRALES------------HRGGNLV-RADLLC-----SINQE 77 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS------EEEEEESCHHHHHT------------CSSSCEE-ECSTTT-----TBCGG
T ss_pred CCCCeEEEeccCccHHHHHHHhcC------cEEEEECCHHHHhc------------ccCCeEE-ECChhh-----hcccC
Confidence 345699999966555666677643 56666754444432 2334443 345544 13347
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
+||.|+.|.|..-......-.. -....+++..+++.+ ++|.+.+..... .....+.++.++.|+.....
T Consensus 78 ~fD~i~~n~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l-----pgG~l~~~~~~~--~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 78 SVDVVVFNPPYVPDTDDPIIGG---GYLGREVIDRFVDAV-----TVGMLYLLVIEA--NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp GCSEEEECCCCBTTCCCTTTBC---CGGGCHHHHHHHHHC-----CSSEEEEEEEGG--GCHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEECCCCccCCccccccC---CcchHHHHHHHHhhC-----CCCEEEEEEecC--CCHHHHHHHHHHCCCcEEEE
Confidence 8999999999764321000000 001244566665554 999997764221 24456777888899987653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0093 Score=48.86 Aligned_cols=106 Identities=16% Similarity=0.100 Sum_probs=66.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + . ..|+.|..++..+ .+.+++.... ..+.+ ...|+.++.. ..
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~-~--~--~v~gvD~s~~~l~---~a~~~~~~~~-~~v~~-~~~d~~~~~~-----~~ 104 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER-G--Y--EVVGLDLHEEMLR---VARRKAKERN-LKIEF-LQGDVLEIAF-----KN 104 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT-T--C--EEEEEESCHHHHH---HHHHHHHHTT-CCCEE-EESCGGGCCC-----CS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC-C--C--eEEEEECCHHHHH---HHHHHHHhcC-CceEE-EECChhhccc-----CC
Confidence 45679999996666666678775 2 2 4566675444432 3555554432 23444 4458877642 25
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+||.|+.++..... .+.+-+..+++.+..+|+|||.+.+++
T Consensus 105 ~fD~v~~~~~~~~~-------------~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 105 EFDAVTMFFSTIMY-------------FDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp CEEEEEECSSGGGG-------------SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccEEEEcCCchhc-------------CCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 79999976532211 012346778899999999999998765
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.019 Score=50.07 Aligned_cols=133 Identities=17% Similarity=0.117 Sum_probs=83.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||-||=|.=.++..|++.+. ++.+|.+|..+.+.+. +++.....+..-+..-|+. ... .
T Consensus 181 ~~~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~~~~~~~~------~~~~~~~~~~v~~~~~d~~--~~~---p 246 (348)
T 3lst_A 181 DFPATGTVADVGGGRGGFLLTVLREHP---GLQGVLLDRAEVVARH------RLDAPDVAGRWKVVEGDFL--REV---P 246 (348)
T ss_dssp CCCSSEEEEEETCTTSHHHHHHHHHCT---TEEEEEEECHHHHTTC------CCCCGGGTTSEEEEECCTT--TCC---C
T ss_pred CccCCceEEEECCccCHHHHHHHHHCC---CCEEEEecCHHHhhcc------cccccCCCCCeEEEecCCC--CCC---C
Confidence 577889999999777777888999874 5778888885443311 1111111122334455664 121 1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec--CC--C----------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR--DD--H---------------- 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~--~~--~---------------- 154 (214)
.||.|+.+.--.-.. ..-...+++.+..+|+|||.+.|.-. .. .
T Consensus 247 --~~D~v~~~~vlh~~~--------------d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~ 310 (348)
T 3lst_A 247 --HADVHVLKRILHNWG--------------DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAART 310 (348)
T ss_dssp --CCSEEEEESCGGGSC--------------HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTS
T ss_pred --CCcEEEEehhccCCC--------------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCC
Confidence 799999876543221 12234667889999999999977521 11 1
Q ss_pred --CCCcccHhhHHHhcCCEEEEEec
Q 041136 155 --PYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 --Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
.++.-++..+.+++||...+..+
T Consensus 311 ~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 311 GQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCceEEEEE
Confidence 12333466788899999988765
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0011 Score=56.80 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=67.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-----------HhCCCEEEEccccc
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-----------WSRGCLVLHGVNVH 85 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-----------~~~g~~Vl~~VDAt 85 (214)
....+||.||=|+=.++..|+++ + ..++++.-+|. ++.+ -+.+++ .+ ....+.++. -|+.
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~--~~i~---~ar~~~-~~~~~l~~~~~~~~~~~v~~~~-~D~~ 144 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDE--DVIM---VSKDLI-KIDNGLLEAMLNGKHEKAKLTI-GDGF 144 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCH--HHHH---HHHHHT-CTTTTHHHHHHTTCCSSEEEEE-SCHH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCH--HHHH---HHHHHH-hhccccccccccCCCCcEEEEE-CchH
Confidence 45689999998888888888886 3 34565555543 3321 244444 22 112344444 4665
Q ss_pred cCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHH-HHHHHHHHHhccCCCCEEEEEe
Q 041136 86 TMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNL-LEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 86 ~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~L-L~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+.-. . ..+||.||.|.|..... ...| ...|++.+..+|++||.+.+..
T Consensus 145 ~~l~---~-~~~fD~Ii~d~~~~~~~-------------~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 145 EFIK---N-NRGFDVIIADSTDPVGP-------------AKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp HHHH---H-CCCEEEEEEECCCCC------------------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhc---c-cCCeeEEEECCCCCCCc-------------chhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 4211 1 46799999999863211 1112 4678999999999999987763
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.032 Score=45.37 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=63.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||.+|-|.=.++..|++. + ..++ +.|..++..+ .+.+|++.+.-.....+..-|+.+.. +..
T Consensus 89 ~~~~~~vldiG~G~G~~~~~l~~~-~--~~v~--~vD~~~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~----~~~ 156 (248)
T 2yvl_A 89 LNKEKRVLEFGTGSGALLAVLSEV-A--GEVW--TFEAVEEFYK---TAQKNLKKFNLGKNVKFFNVDFKDAE----VPE 156 (248)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHH-S--SEEE--EECSCHHHHH---HHHHHHHHTTCCTTEEEECSCTTTSC----CCT
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh-C--CEEE--EEecCHHHHH---HHHHHHHHcCCCCcEEEEEcChhhcc----cCC
Confidence 457889999998776677778877 2 3554 4554333331 35666654421122344455665432 134
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..||.|+.|.|.. ..+++.+..+|+++|.+.+..
T Consensus 157 ~~~D~v~~~~~~~---------------------~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 157 GIFHAAFVDVREP---------------------WHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp TCBSEEEECSSCG---------------------GGGHHHHHHHBCTTCEEEEEE
T ss_pred CcccEEEECCcCH---------------------HHHHHHHHHHcCCCCEEEEEe
Confidence 6799999987621 123566788999999998874
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.041 Score=44.26 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=63.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++... ++ |+.|..+++.+ .+.+++ .++.+ ...|+.++. + ..
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~---~v--~~~D~s~~~~~---~a~~~~-----~~~~~-~~~d~~~~~----~-~~ 99 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG---DT--AGLELSEDMLT---HARKRL-----PDATL-HQGDMRDFR----L-GR 99 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS---EE--EEEESCHHHHH---HHHHHC-----TTCEE-EECCTTTCC----C-SS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC---cE--EEEeCCHHHHH---HHHHhC-----CCCEE-EECCHHHcc----c-CC
Confidence 5678999999777677777888753 44 55665444331 122221 23444 445777653 2 56
Q ss_pred cccEEEEc---CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFN---FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFN---FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||.|+.. +.|... .+-+..+++.+..+|++||.+.++.
T Consensus 100 ~~D~v~~~~~~~~~~~~---------------~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 100 KFSAVVSMFSSVGYLKT---------------TEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CEEEEEECTTGGGGCCS---------------HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEEcCchHhhcCC---------------HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 79999942 333321 2345678889999999999998863
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0012 Score=56.90 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=69.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+..+||.||=|+=+.+..|+++.+ ..++++.-+|. ++.+ -+.+++..+ ....+.+ +.-|+.+.-..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~--~~i~---~a~~~~~~~~~~~~~~~v~~-~~~D~~~~l~~-- 147 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDE--TVIE---VSKIYFKNISCGYEDKRVNV-FIEDASKFLEN-- 147 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCH--HHHH---HHHHHCTTTSGGGGSTTEEE-EESCHHHHHHH--
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCH--HHHH---HHHHHhHHhccccCCCcEEE-EECChHHHHHh--
Confidence 4568999999888888888887642 34555555543 3321 244444332 2233444 44477652111
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHH-HHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLL-EAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL-~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.||.+.|..-.. ...|. ..|++.+..+|+++|.+.+.
T Consensus 148 -~~~~fD~Ii~d~~~~~~~-------------~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 148 -VTNTYDVIIVDSSDPIGP-------------AETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp -CCSCEEEEEEECCCTTTG-------------GGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCCceEEEEcCCCCCCc-------------chhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 146799999998754221 12233 78999999999999998776
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0072 Score=50.78 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=65.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++. + .+ .|+.|..+...+ .+.+++..... + .-+...|+.++.. ..
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~-g--~~--v~~vD~s~~~~~---~a~~~~~~~~~-~-~~~~~~d~~~~~~-----~~ 183 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL-G--YD--VTSWDHNENSIA---FLNETKEKENL-N-ISTALYDINAANI-----QE 183 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHHHHTTC-C-EEEEECCGGGCCC-----CS
T ss_pred cCCCcEEEECCCCCHHHHHHHHC-C--Ce--EEEEECCHHHHH---HHHHHHHHcCC-c-eEEEEeccccccc-----cC
Confidence 36889999996666667678876 2 34 456665444332 35555444321 2 3344557776542 57
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+||.|+.+.+..-. +...+..+++.+..+|++||.+.|.
T Consensus 184 ~fD~i~~~~~~~~~--------------~~~~~~~~l~~~~~~LkpgG~l~i~ 222 (286)
T 3m70_A 184 NYDFIVSTVVFMFL--------------NRERVPSIIKNMKEHTNVGGYNLIV 222 (286)
T ss_dssp CEEEEEECSSGGGS--------------CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CccEEEEccchhhC--------------CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 89999998764321 1224556888899999999996554
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0088 Score=52.55 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=69.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=+|+.. |+ + +.. +++.|..++.. ..+.+|++.+.-.+...++.-|+.++. .
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~--V~~vD~s~~ai---~~a~~n~~~n~l~~~v~~~~~D~~~~~-------~ 257 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--N-AKK--IYAIDINPHAI---ELLKKNIKLNKLEHKIIPILSDVREVD-------V 257 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--T-SSE--EEEEESCHHHH---HHHHHHHHHTTCTTTEEEEESCGGGCC-------C
T ss_pred CCCCEEEEccCccCHHHHh-cc--C-CCE--EEEEECCHHHH---HHHHHHHHHcCCCCcEEEEECChHHhc-------C
Confidence 5788999988666666655 54 2 334 45666544433 247778776643233456666887653 6
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
+||.|+.|.|+.+. .|+..+..+|+++|.+++.-+...
T Consensus 258 ~fD~Vi~dpP~~~~--------------------~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 258 KGNRVIMNLPKFAH--------------------KFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp CEEEEEECCTTTGG--------------------GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred CCcEEEECCcHhHH--------------------HHHHHHHHHcCCCCEEEEEEeecC
Confidence 79999999998652 566678889999999988766544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.011 Score=47.53 Aligned_cols=110 Identities=15% Similarity=0.018 Sum_probs=65.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L~~~~ 91 (214)
....+||-||=|.=.++..|++..+ ..+ .|+.|..++..+ .+.+++.... ..++. +..-|+..+.
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~--v~gvD~s~~~~~---~a~~~~~~~~~~~~~~~~v~-~~~~d~~~~~--- 97 (217)
T 3jwh_A 28 SNARRVIDLGCGQGNLLKILLKDSF-FEQ--ITGVDVSYRSLE---IAQERLDRLRLPRNQWERLQ-LIQGALTYQD--- 97 (217)
T ss_dssp TTCCEEEEETCTTCHHHHHHHHCTT-CSE--EEEEESCHHHHH---HHHHHHTTCCCCHHHHTTEE-EEECCTTSCC---
T ss_pred cCCCEEEEeCCCCCHHHHHHHhhCC-CCE--EEEEECCHHHHH---HHHHHHHHhcCCcccCcceE-EEeCCccccc---
Confidence 4678999999777677777888653 234 455564343331 3444443211 01233 3444665432
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
....+||.|+.+..-.-. ...-+..+++.+..+|++||.+.++..
T Consensus 98 -~~~~~fD~v~~~~~l~~~--------------~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 98 -KRFHGYDAATVIEVIEHL--------------DLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp -GGGCSCSEEEEESCGGGC--------------CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred -ccCCCcCEEeeHHHHHcC--------------CHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 344689999987643211 223456788889999999997776644
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0029 Score=51.17 Aligned_cols=110 Identities=11% Similarity=0.107 Sum_probs=67.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC--CCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH--PTL 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~--~~~ 93 (214)
.....+||-||=|.=.++..|++.++....+ |+.|..++..+ .+.++++...-.+...+..-|+.+.-.. ...
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 136 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTL--ITCDVDEKSTA---LAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAG 136 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTT
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEE--EEEeCCHHHHH---HHHHHHHHCCCCCceEEEeCCHHHHHHHhhhcc
Confidence 4467899999977767777788887533444 55564444331 4666666554333234445566443110 001
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.|+.+.|.. -...+++.+..+|++||.+.+.
T Consensus 137 ~~~~fD~v~~~~~~~-------------------~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 137 QAWQYDLIYIDADKA-------------------NTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp CTTCEEEEEECSCGG-------------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCccEEEECCCHH-------------------HHHHHHHHHHHhcCCCcEEEEe
Confidence 126899999887621 1234778888999999999874
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0068 Score=49.73 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=57.9
Q ss_pred EEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC---
Q 041136 78 VLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH--- 154 (214)
Q Consensus 78 Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~--- 154 (214)
-+...|++++...+.....+||.||.++-.... ..+..-+..+++.+..+|+|||.+.++...+.
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~------------~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 205 (265)
T 2i62_A 138 QVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAA------------CPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY 205 (265)
T ss_dssp EEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH------------CSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE
T ss_pred eEEEeeeccCCCCCccccCCccEEEEhhhhhhh------------cCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE
Confidence 466778887653222334789999988642210 01233456788889999999999877643221
Q ss_pred ----------CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 ----------PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 ----------Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
+++.-.+..+..++||.+.+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 239 (265)
T 2i62_A 206 MIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVI 239 (265)
T ss_dssp EETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred EcCCccccccccCHHHHHHHHHHCCCEEEEEEEe
Confidence 122336778889999999886544
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.018 Score=45.70 Aligned_cols=127 Identities=14% Similarity=0.151 Sum_probs=71.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=.++..|++. + ...+ ++.|..++..+ .+.+|++.+.- ++. +..-|+.++. .
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~-~~~v--~~vD~~~~~~~---~a~~~~~~~~~-~~~-~~~~d~~~~~-------~ 111 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-G-AKEV--ICVEVDKEAVD---VLIENLGEFKG-KFK-VFIGDVSEFN-------S 111 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-T-CSEE--EEEESCHHHHH---HHHHHTGGGTT-SEE-EEESCGGGCC-------C
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-C-CCEE--EEEECCHHHHH---HHHHHHHHcCC-CEE-EEECchHHcC-------C
Confidence 36789999996655566667775 2 2234 45564443331 35555544322 333 4445777753 3
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
.||.|+.|.|..-... .+...|++.+..+| |.+.++. ...|...-.+...+++.|+.+....
T Consensus 112 ~~D~v~~~~p~~~~~~--------------~~~~~~l~~~~~~l---~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~ 173 (207)
T 1wy7_A 112 RVDIVIMNPPFGSQRK--------------HADRPFLLKAFEIS---DVVYSIH-LAKPEVRRFIEKFSWEHGFVVTHRL 173 (207)
T ss_dssp CCSEEEECCCCSSSST--------------TTTHHHHHHHHHHC---SEEEEEE-ECCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCEEEEcCCCccccC--------------CchHHHHHHHHHhc---CcEEEEE-eCCcCCHHHHHHHHHHCCCeEEEEE
Confidence 7999999999543211 11234456666666 5555543 1122233446667788898776544
Q ss_pred c
Q 041136 177 E 177 (214)
Q Consensus 177 ~ 177 (214)
+
T Consensus 174 ~ 174 (207)
T 1wy7_A 174 T 174 (207)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0058 Score=48.06 Aligned_cols=116 Identities=20% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCC--------CcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSA--------TNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM 87 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~--------~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L 87 (214)
..++.+||-+|=|.=.++..|++.++.. ..|++.-.+... + + .++.++-..|++++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~--------~--~~~~~~~~~d~~~~ 83 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------P--------L--EGATFLCPADVTDP 83 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------C--------C--TTCEEECSCCTTSH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------c--------C--CCCeEEEeccCCCH
Confidence 4568899999977666777799887532 455555444310 0 0 23444314555543
Q ss_pred CCC----CCCCCCcccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 88 DRH----PTLSQMKFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 88 ~~~----~~~~~~~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
... ..+...+||.|+.|+ ||..+. ...+ ......++..+++.+..+|++||.+.++...+
T Consensus 84 ~~~~~~~~~~~~~~fD~V~~~~~~~~~~~---~~~~---~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (196)
T 2nyu_A 84 RTSQRILEVLPGRRADVILSDMAPNATGF---RDLD---HDRLISLCLTLLSVTPDILQPGGTFLCKTWAG 148 (196)
T ss_dssp HHHHHHHHHSGGGCEEEEEECCCCCCCSC---HHHH---HHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HHHHHHHHhcCCCCCcEEEeCCCCCCCCC---cccC---HHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 210 002345799999998 454321 0000 11234567899999999999999998886544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.024 Score=47.95 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=69.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-HhCCCEEEEccccccCCCCC--CC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-WSRGCLVLHGVNVHTMDRHP--TL 93 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-~~~g~~Vl~~VDAt~L~~~~--~~ 93 (214)
.+..+||-||=|.=.++..|++.+....+++ +.|..+...+ .+.++++.. .......+...|+.++.-.. .+
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~--gvD~s~~~~~---~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 109 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQII--GSDLSATMIK---TAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSV 109 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEE--EEESCHHHHH---HHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEE--EEeCCHHHHH---HHHHHHHhccCCCCceEEEEcCHHhCCccccccc
Confidence 4788999999777777888998764444555 4554343331 355565554 11223445566887765211 12
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
...+||.|+.+..-.-. -...+++.+..+|++||.+.|
T Consensus 110 ~~~~fD~V~~~~~l~~~-----------------~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 110 DKQKIDMITAVECAHWF-----------------DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp TSSCEEEEEEESCGGGS-----------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCeeEEeHhhHHHHh-----------------CHHHHHHHHHHhcCCCcEEEE
Confidence 23789999998642211 234678889999999999977
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.022 Score=50.13 Aligned_cols=109 Identities=14% Similarity=0.141 Sum_probs=67.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++.+. ++.+|.+|. +++.+ .+.++++.....+-.-+..-|+.+... .+. .
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~p-~ 247 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNK---EVEVTIVDL-PQQLE---MMRKQTAGLSGSERIHGHGANLLDRDV--PFP-T 247 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHST---TCEEEEEEC-HHHHH---HHHHHHTTCTTGGGEEEEECCCCSSSC--CCC-C
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCC---CCEEEEEeC-HHHHH---HHHHHHHhcCcccceEEEEccccccCC--CCC-C
Confidence 5678999999777777778999874 457888888 44432 355554332111123344556654320 122 5
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.||.|+...--.-.. .+-...+++.+...|+|||.+.|.
T Consensus 248 ~~D~v~~~~vlh~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~ 286 (363)
T 3dp7_A 248 GFDAVWMSQFLDCFS--------------EEEVISILTRVAQSIGKDSKVYIM 286 (363)
T ss_dssp CCSEEEEESCSTTSC--------------HHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CcCEEEEechhhhCC--------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 799999876443321 112345677888999999999774
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0066 Score=49.02 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=68.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-CCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-PTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~~~ 93 (214)
......+||-||=|.=.++..|++.++.+..+ |+.|..++..+ .+.+|++...-.+...+..-|+.+.-.. +.-
T Consensus 55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 129 (223)
T 3duw_A 55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRV--VTLEASEKHAD---IARSNIERANLNDRVEVRTGLALDSLQQIENE 129 (223)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEE--EEEESCHHHHH---HHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred HhhCCCEEEEecCCccHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc
Confidence 34567899999977667777788887533444 55564343331 4666766554333344555577543110 000
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.|+.+.|+. -...+|..+..+|++||.+.+.
T Consensus 130 ~~~~fD~v~~d~~~~-------------------~~~~~l~~~~~~L~pgG~lv~~ 166 (223)
T 3duw_A 130 KYEPFDFIFIDADKQ-------------------NNPAYFEWALKLSRPGTVIIGD 166 (223)
T ss_dssp TCCCCSEEEECSCGG-------------------GHHHHHHHHHHTCCTTCEEEEE
T ss_pred CCCCcCEEEEcCCcH-------------------HHHHHHHHHHHhcCCCcEEEEe
Confidence 115699999887621 1236788889999999977664
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.028 Score=47.78 Aligned_cols=137 Identities=17% Similarity=0.194 Sum_probs=75.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH-----HHHh-----CCCEEEEcccccc
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ-----SLWS-----RGCLVLHGVNVHT 86 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~-----~L~~-----~g~~Vl~~VDAt~ 86 (214)
..+.+||-||=|.=.++.+|++. + ...++++-+-+.+.+. .+..|++ ...- .++.+. ..|..+
T Consensus 78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~----~a~~n~~~N~~~~~~~~~~~~~~v~~~-~~~~~~ 150 (281)
T 3bzb_A 78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILN----SLESNIREHTANSCSSETVKRASPKVV-PYRWGD 150 (281)
T ss_dssp TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHH----HHHHHHHTTCC----------CCCEEE-ECCTTS
T ss_pred cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHH----HHHHHHHHhhhhhcccccCCCCCeEEE-EecCCC
Confidence 46789999996655566667764 3 2366666551223332 4666663 2211 123333 222222
Q ss_pred CCCCC--CCCCCcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccC---C--CCEEEEEecCCCC---
Q 041136 87 MDRHP--TLSQMKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLG---E--GGEVHVTLRDDHP--- 155 (214)
Q Consensus 87 L~~~~--~~~~~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~---~--~G~i~VTl~~~~P--- 155 (214)
..... .+...+||.||. +-+|.- ..+..+++.+..+|+ + +|.+.|......|
T Consensus 151 ~~~~~~~~~~~~~fD~Ii~~dvl~~~-----------------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~ 213 (281)
T 3bzb_A 151 SPDSLQRCTGLQRFQVVLLADLLSFH-----------------QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLA 213 (281)
T ss_dssp CTHHHHHHHSCSSBSEEEEESCCSCG-----------------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC------
T ss_pred ccHHHHhhccCCCCCEEEEeCcccCh-----------------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccc
Confidence 11000 002467999997 444431 124456677888999 9 9998887655443
Q ss_pred CCcccHhhHHHhcC-CEEEEEec
Q 041136 156 YNQWNVMGLADKLG-LVLKEKVE 177 (214)
Q Consensus 156 y~~W~i~~lA~~~g-l~l~~~~~ 177 (214)
.....+..++.+.| |.+.....
T Consensus 214 ~~~~~~~~~l~~~G~f~v~~~~~ 236 (281)
T 3bzb_A 214 ERDLAFFRLVNADGALIAEPWLS 236 (281)
T ss_dssp --CTHHHHHHHHSTTEEEEEEEC
T ss_pred hhHHHHHHHHHhcCCEEEEEecc
Confidence 22455667888899 99887643
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.045 Score=46.11 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=67.6
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPT 92 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~ 92 (214)
....+..+||-||=|.=.++..|++.++.+..+++ .|..+...+ .+.+++.. .+.. -+..-|+.++.
T Consensus 18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~g--vD~s~~~~~---~a~~~~~~---~~~~v~~~~~d~~~~~---- 85 (284)
T 3gu3_A 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTG--IDSGETLLA---EARELFRL---LPYDSEFLEGDATEIE---- 85 (284)
T ss_dssp SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEE--EESCHHHHH---HHHHHHHS---SSSEEEEEESCTTTCC----
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHH---HHHHHHHh---cCCceEEEEcchhhcC----
Confidence 35567899999997777788889888754445555 453333321 24444332 3322 23445666543
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+ ..+||.|+.+....... + ...+++.+..+|+|||.+.+.-
T Consensus 86 ~-~~~fD~v~~~~~l~~~~----~------------~~~~l~~~~~~LkpgG~l~~~~ 126 (284)
T 3gu3_A 86 L-NDKYDIAICHAFLLHMT----T------------PETMLQKMIHSVKKGGKIICFE 126 (284)
T ss_dssp C-SSCEEEEEEESCGGGCS----S------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred c-CCCeeEEEECChhhcCC----C------------HHHHHHHHHHHcCCCCEEEEEe
Confidence 2 35899999987532211 0 1367788889999999997663
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.012 Score=52.46 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=70.3
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+...+.+||-||-|.=.++..+++. + ...++|+-.. +.+. .+.++++...-.+...+..-|+.++.-
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~-g-~~~V~gvD~s--~~~~----~a~~~~~~~~~~~~v~~~~~d~~~~~~---- 126 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQA-G-ARKVYAVEAT--KMAD----HARALVKANNLDHIVEVIEGSVEDISL---- 126 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHT-T-CSEEEEEESS--TTHH----HHHHHHHHTTCTTTEEEEESCGGGCCC----
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhc-C-CCEEEEEccH--HHHH----HHHHHHHHcCCCCeEEEEECchhhcCc----
Confidence 34567899999996665566667775 3 3366666554 3322 355666554433445566678887652
Q ss_pred CCCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
. ++||.||.+.. |... +...+..+++.+..+|++||.+.+.
T Consensus 127 ~-~~~D~Iv~~~~~~~l~--------------~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 127 P-EKVDVIISEWMGYFLL--------------RESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp S-SCEEEEEECCCBTTBT--------------TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred C-CcceEEEEcChhhccc--------------chHHHHHHHHHHHhhCCCCeEEEEe
Confidence 2 78999999884 4332 1224566778888999999997543
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.014 Score=51.00 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=68.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
..++.+||-||-|.=.++..+++. + ...++|.-.+ +.+. .+.++++...-.+...+..-|+.++. +..
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s--~~~~----~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~ 103 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS--SIIE----MAKELVELNGFSDKITLLRGKLEDVH----LPF 103 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS--THHH----HHHHHHHHTTCTTTEEEEESCTTTSC----CSS
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH--HHHH----HHHHHHHHcCCCCCEEEEECchhhcc----CCC
Confidence 346789999996665556667765 3 3467776554 2222 36666655433233445566777663 334
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
.+||.||.+.+..+.. +...+..++..+..+|++||.+.
T Consensus 104 ~~~D~Ivs~~~~~~l~-------------~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 104 PKVDIIISEWMGYFLL-------------YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCEEEEEECCCBTTBS-------------TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CcccEEEEeCchhhcc-------------cHHHHHHHHHHHHhhcCCCeEEE
Confidence 6899999998744321 12245567788889999999985
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.036 Score=43.64 Aligned_cols=126 Identities=12% Similarity=0.072 Sum_probs=75.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCC-CCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGS-ATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH---- 90 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~-~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~---- 90 (214)
..+..+||-||=|.=.++..|++.++. ...|+|.-+.... . ..++.++. -|++++...
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~------------~~~v~~~~-~d~~~~~~~~~~~ 82 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----P------------IPNVYFIQ-GEIGKDNMNNIKN 82 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----C------------CTTCEEEE-CCTTTTSSCCC--
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----C------------CCCceEEE-ccccchhhhhhcc
Confidence 456789999997776777779988752 3456665444411 0 12455443 466654310
Q ss_pred -C----------------CCCCCcccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 91 -P----------------TLSQMKFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 91 -~----------------~~~~~~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
+ .+....||.|+.|.+ |..+. ...+ .....+++...++.+..+|++||.+.++...
T Consensus 83 ~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~---~~~d---~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 83 INYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN---KIDD---HLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp ---------CHHHHHHHHHHTTCCEEEEEECCCCCCCSC---HHHH---HHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCC---cccC---HHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 0 034468999999974 43321 1111 1223456778999999999999999887654
Q ss_pred CCCCCcccHhhHHH
Q 041136 153 DHPYNQWNVMGLAD 166 (214)
Q Consensus 153 ~~Py~~W~i~~lA~ 166 (214)
+. +.+.+.....
T Consensus 157 ~~--~~~~l~~~l~ 168 (201)
T 2plw_A 157 GS--QTNNLKTYLK 168 (201)
T ss_dssp ST--THHHHHHHHH
T ss_pred CC--CHHHHHHHHH
Confidence 32 3444544443
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.015 Score=47.05 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=68.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhC----CCCcEEEeecCChHHHHhcCccHHHHHHHHHh----CCCEEEEccccccC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFG----SATNMVASSLDSERTLKTKHWTSQAHLQSLWS----RGCLVLHGVNVHTM 87 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~----~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~----~g~~Vl~~VDAt~L 87 (214)
..+..+||-||-|.=.++..|++..+ +...++ +.|..+++.+ .+.+|++.+.- .....+...|+.+.
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~--~vD~~~~~~~---~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 152 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVI--GLERVKDLVN---FSLENIKRDKPELLKIDNFKIIHKNIYQV 152 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEE--EEESCHHHHH---HHHHHHHHHCGGGGSSTTEEEEECCGGGC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEE--EEeCCHHHHH---HHHHHHHHcCccccccCCEEEEECChHhc
Confidence 45678999999777667777888765 333454 4554444442 46667666531 12233445577663
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
.........+||.|+.+.+.... +..+..+|+++|.+.+++-.+
T Consensus 153 ~~~~~~~~~~fD~I~~~~~~~~~----------------------~~~~~~~LkpgG~lv~~~~~~ 196 (227)
T 2pbf_A 153 NEEEKKELGLFDAIHVGASASEL----------------------PEILVDLLAENGKLIIPIEED 196 (227)
T ss_dssp CHHHHHHHCCEEEEEECSBBSSC----------------------CHHHHHHEEEEEEEEEEEEET
T ss_pred ccccCccCCCcCEEEECCchHHH----------------------HHHHHHhcCCCcEEEEEEccC
Confidence 20000224679999988765321 244678899999998887653
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.11 Score=47.25 Aligned_cols=130 Identities=20% Similarity=0.180 Sum_probs=78.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||-+|=|.=.|++.||+.. ..+ ++.|..++..+ .|.+|++... .. ..+..-|+.++.. .
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~---~~V--~gvD~s~~ai~---~A~~n~~~ng-l~-v~~~~~d~~~~~~-----~ 352 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG---FNV--KGFDSNEFAIE---MARRNVEINN-VD-AEFEVASDREVSV-----K 352 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT---CEE--EEEESCHHHHH---HHHHHHHHHT-CC-EEEEECCTTTCCC-----T
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC---CEE--EEEECCHHHHH---HHHHHHHHcC-Cc-EEEEECChHHcCc-----c
Confidence 3567899999855555555577752 344 45564444432 5777776543 23 4455567776532 1
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA~~~gl~l~~ 174 (214)
+||.||.|.|..|.. ..++... . .|+++|.+.|+- .|.. ..++..+ . |.+.+
T Consensus 353 -~fD~Vv~dPPr~g~~--------------~~~~~~l----~-~l~p~givyvsc---~p~tlarDl~~l---~-y~l~~ 405 (425)
T 2jjq_A 353 -GFDTVIVDPPRAGLH--------------PRLVKRL----N-REKPGVIVYVSC---NPETFARDVKML---D-YRIDE 405 (425)
T ss_dssp -TCSEEEECCCTTCSC--------------HHHHHHH----H-HHCCSEEEEEES---CHHHHHHHHHHS---S-CCEEE
T ss_pred -CCCEEEEcCCccchH--------------HHHHHHH----H-hcCCCcEEEEEC---ChHHHHhHHhhC---e-EEEEE
Confidence 799999999987642 1122211 1 279999888872 2211 1222222 2 88999
Q ss_pred EecCCCCCCCCCccc
Q 041136 175 KVEFLKQDFPGYHNK 189 (214)
Q Consensus 175 ~~~F~~~~yPgY~~~ 189 (214)
..+|| +||.=.|-
T Consensus 406 ~~~~D--mFP~T~Hv 418 (425)
T 2jjq_A 406 IVALD--MFPHTPHV 418 (425)
T ss_dssp EEEEC--CSTTSSCC
T ss_pred EEEEC--cCCCCceE
Confidence 99998 88876663
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.013 Score=48.20 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=65.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||=|.=.++..||+... ... .|+.|..++..+ .+.++++...-.+...+..-|+.+.-.. .+ .
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~-~~~--v~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~-~ 140 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISD-DIH--VTTIERNETMIQ---YAKQNLATYHFENQVRIIEGNALEQFEN-VN-D 140 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCT-TCE--EEEEECCHHHHH---HHHHHHHHTTCTTTEEEEESCGGGCHHH-HT-T
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCC-CCE--EEEEECCHHHHH---HHHHHHHHcCCCCcEEEEECCHHHHHHh-hc-c
Confidence 34678999999666566666887442 334 455665444332 4666666554222344555577653210 11 4
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.+||.|+.+.+... +..||+.+..+|++||.+.+
T Consensus 141 ~~fD~V~~~~~~~~-------------------~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 141 KVYDMIFIDAAKAQ-------------------SKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp SCEEEEEEETTSSS-------------------HHHHHHHHGGGEEEEEEEEE
T ss_pred CCccEEEEcCcHHH-------------------HHHHHHHHHHhcCCCeEEEE
Confidence 67999998854211 33488889999999999877
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.015 Score=49.64 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=32.2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHH--hHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKR--HKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~--n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....||.|+.+..- ..++. ..+-+..+|+.+..+|++||.+.|.
T Consensus 174 ~~~~fD~I~~~~vl------------~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 174 QTPEYDVVLCLSLT------------KWVHLNWGDEGLKRMFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp CCCCEEEEEEESCH------------HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcCEEEEChHH------------HHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 45789999986431 01111 3457888999999999999999886
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0057 Score=49.51 Aligned_cols=109 Identities=16% Similarity=0.095 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
......+||.||-|.=.++..|++.++....+++.-.+. +.. ..+.++++........-++.-|+.+.-. .+.
T Consensus 66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~---~~a~~~~~~~g~~~~i~~~~~d~~~~~~--~~~ 138 (229)
T 2avd_A 66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDA--QPP---ELGRPLWRQAEAEHKIDLRLKPALETLD--ELL 138 (229)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCS--HHH---HHHHHHHHHTTCTTTEEEEESCHHHHHH--HHH
T ss_pred HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCH--HHH---HHHHHHHHHCCCCCeEEEEEcCHHHHHH--HHH
Confidence 345678999999877677777888775444565554443 222 1355555543221223333446543211 011
Q ss_pred ----CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 ----QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ----~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...||.|+.+.|... ...+++.+..+|++||.+.+.
T Consensus 139 ~~~~~~~~D~v~~d~~~~~-------------------~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 139 AAGEAGTFDVAVVDADKEN-------------------CSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp HTTCTTCEEEEEECSCSTT-------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCCCCccEEEECCCHHH-------------------HHHHHHHHHHHcCCCeEEEEE
Confidence 167999999877211 235678888999999998774
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.01 Score=57.66 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=85.3
Q ss_pred cccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCC
Q 041136 12 WISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRH 90 (214)
Q Consensus 12 ~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~ 90 (214)
++..+..+++||=+|=|.=.||..+++. + +.. +|+.|..+...+ .+.+|++.+.-. ....++.-|+.+.-.
T Consensus 533 ~l~~~~~g~~VLDlg~GtG~~sl~aa~~-g-a~~--V~aVD~s~~al~---~a~~N~~~ngl~~~~v~~i~~D~~~~l~- 604 (703)
T 3v97_A 533 MLGQMSKGKDFLNLFSYTGSATVHAGLG-G-ARS--TTTVDMSRTYLE---WAERNLRLNGLTGRAHRLIQADCLAWLR- 604 (703)
T ss_dssp HHHHHCTTCEEEEESCTTCHHHHHHHHT-T-CSE--EEEEESCHHHHH---HHHHHHHHTTCCSTTEEEEESCHHHHHH-
T ss_pred HHHHhcCCCcEEEeeechhHHHHHHHHC-C-CCE--EEEEeCCHHHHH---HHHHHHHHcCCCccceEEEecCHHHHHH-
Confidence 4455668899999985444455556652 2 223 556674444332 477887765422 134556677776321
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCC
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGL 170 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl 170 (214)
....+||.||.|.|..+......+ ..........++..|..+|++||.+.++.+.... .. + .+...+.|+
T Consensus 605 --~~~~~fD~Ii~DPP~f~~~~~~~~-----~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~-~~-~-~~~l~~~g~ 674 (703)
T 3v97_A 605 --EANEQFDLIFIDPPTFSNSKRMED-----AFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGF-RM-D-LDGLAKLGL 674 (703)
T ss_dssp --HCCCCEEEEEECCCSBC------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTC-CC-C-HHHHHHTTE
T ss_pred --hcCCCccEEEECCccccCCccchh-----HHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccc-cc-C-HHHHHHcCC
Confidence 124689999999998764211100 0113456777888999999999999877554221 11 1 344556777
Q ss_pred EEEE
Q 041136 171 VLKE 174 (214)
Q Consensus 171 ~l~~ 174 (214)
.+..
T Consensus 675 ~~~~ 678 (703)
T 3v97_A 675 KAQE 678 (703)
T ss_dssp EEEE
T ss_pred ceee
Confidence 7544
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.012 Score=48.63 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=34.6
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||.|+.|.|.........+ ...+.+..|++.+..+|++||.+.++
T Consensus 166 ~~~fD~Iv~npp~~~~~~~~~~-------~~~~~~~~~l~~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 166 GSAPDVVLTDLPYGERTHWEGQ-------VPGQPVAGLLRSLASALPAHAVIAVT 213 (250)
T ss_dssp TCCCSEEEEECCGGGSSSSSSC-------CCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCceEEEeCCCeecccccccc-------ccccHHHHHHHHHHHhcCCCcEEEEe
Confidence 3479999999997654210000 12357788899999999999999884
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.015 Score=51.69 Aligned_cols=138 Identities=10% Similarity=-0.011 Sum_probs=82.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+.+||=+|=|.=.++..+|.... ...|+ +.|..+...+ .|..|++...-.+...+..-|+.++.. ..
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~--g~Dis~~~l~---~A~~n~~~~gl~~~i~~~~~D~~~~~~----~~ 284 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRY-SGEII--GIEKYRKHLI---GAEMNALAAGVLDKIKFIQGDATQLSQ----YV 284 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEE--EEESCHHHHH---HHHHHHHHTTCGGGCEEEECCGGGGGG----TC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEE--EEeCCHHHHH---HHHHHHHHcCCCCceEEEECChhhCCc----cc
Confidence 45678899887554455555666532 22454 5554344332 467776654211223455668888752 34
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..||.||.|.|.--. .+.. .....|...|++.+..+| +|.+ .|+ .+.-.+..+..+.|+.+.+
T Consensus 285 ~~fD~Ii~npPyg~r-~~~~-------~~~~~ly~~~~~~l~r~l--~g~~~~i~------~~~~~~~~~~~~~G~~~~~ 348 (373)
T 3tm4_A 285 DSVDFAISNLPYGLK-IGKK-------SMIPDLYMKFFNELAKVL--EKRGVFIT------TEKKAIEEAIAENGFEIIH 348 (373)
T ss_dssp SCEEEEEEECCCC--------------CCHHHHHHHHHHHHHHHE--EEEEEEEE------SCHHHHHHHHHHTTEEEEE
T ss_pred CCcCEEEECCCCCcc-cCcc-------hhHHHHHHHHHHHHHHHc--CCeEEEEE------CCHHHHHHHHHHcCCEEEE
Confidence 679999999996321 1100 113457788999999988 4554 555 1344456677788999888
Q ss_pred EecCC
Q 041136 175 KVEFL 179 (214)
Q Consensus 175 ~~~F~ 179 (214)
..++.
T Consensus 349 ~~~~~ 353 (373)
T 3tm4_A 349 HRVIG 353 (373)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.038 Score=48.14 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=76.4
Q ss_pred CCCCCCeEEEEec------CchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC
Q 041136 15 HYTNNQRILLVGE------GDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD 88 (214)
Q Consensus 15 ~~~~~~~ILlVGe------GnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~ 88 (214)
...++.+||=+|= |.=| .-+++..+....|+|.=+... + .++.+...-|++++.
T Consensus 60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~----------------v--~~v~~~i~gD~~~~~ 119 (290)
T 2xyq_A 60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF----------------V--SDADSTLIGDCATVH 119 (290)
T ss_dssp CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC----------------B--CSSSEEEESCGGGCC
T ss_pred CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC----------------C--CCCEEEEECccccCC
Confidence 4567889999999 2233 234555553345665544432 1 256551344777754
Q ss_pred CCCCCCCCcccEEEEcCCCC--CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHH
Q 041136 89 RHPTLSQMKFDVIIFNFPHA--GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLAD 166 (214)
Q Consensus 89 ~~~~~~~~~FD~IiFNFPH~--G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~ 166 (214)
- ..+||.|+.|.++. |... .+.. ....++...++.+..+|++||.+.+....+. ..-.+..+.+
T Consensus 120 ~-----~~~fD~Vvsn~~~~~~g~~~--~d~~-----~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~--~~~~l~~~l~ 185 (290)
T 2xyq_A 120 T-----ANKWDLIISDMYDPRTKHVT--KEND-----SKEGFFTYLCGFIKQKLALGGSIAVKITEHS--WNADLYKLMG 185 (290)
T ss_dssp C-----SSCEEEEEECCCCCC---CC--SCCC-----CCCTHHHHHHHHHHHHEEEEEEEEEEECSSS--CCHHHHHHHT
T ss_pred c-----cCcccEEEEcCCcccccccc--cccc-----chHHHHHHHHHHHHHhcCCCcEEEEEEeccC--CHHHHHHHHH
Confidence 2 25799999997533 3221 1110 1234677889999999999999988654433 2225666777
Q ss_pred hcCCEEEEEe
Q 041136 167 KLGLVLKEKV 176 (214)
Q Consensus 167 ~~gl~l~~~~ 176 (214)
+.|+...+..
T Consensus 186 ~~GF~~v~~~ 195 (290)
T 2xyq_A 186 HFSWWTAFVT 195 (290)
T ss_dssp TEEEEEEEEE
T ss_pred HcCCcEEEEE
Confidence 7777654443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.034 Score=47.07 Aligned_cols=138 Identities=12% Similarity=0.125 Sum_probs=75.8
Q ss_pred CCCCeEEEEe--cCchhHH--HHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEE-EccccccCCCC
Q 041136 17 TNNQRILLVG--EGDFSFS--DCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVL-HGVNVHTMDRH 90 (214)
Q Consensus 17 ~~~~~ILlVG--eGnFSFS--~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl-~~VDAt~L~~~ 90 (214)
.++.+||-|| .|.++.. ..|+..+ +...+..|+.|..+++.+ .+.+.+...... ++.+. ...|+..+...
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~---~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIA---KYKELVAKTSNLENVKFAWHKETSSEYQSR 126 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHH---HHHHHHHTCSSCTTEEEEEECSCHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHH---HHHHHHHhccCCCcceEEEEecchhhhhhh
Confidence 4567999999 6666543 2333333 234445689996666553 244443321111 22322 23444433210
Q ss_pred --CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-C------------
Q 041136 91 --PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-P------------ 155 (214)
Q Consensus 91 --~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-P------------ 155 (214)
..+...+||.|+.++=-.-.. =+..+++.+..+|+|||.+.|...... +
T Consensus 127 ~~~~~~~~~fD~V~~~~~l~~~~----------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~ 190 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQMLYYVK----------------DIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRF 190 (292)
T ss_dssp HHTTTCCCCEEEEEEESCGGGCS----------------CHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGS
T ss_pred hccccCCCceeEEEEeeeeeecC----------------CHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhc
Confidence 013457899999875432221 123567778899999999987643221 0
Q ss_pred --------CCcccHhhHHHhcCCEEEE
Q 041136 156 --------YNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 156 --------y~~W~i~~lA~~~gl~l~~ 174 (214)
++.=.+..+..++||....
T Consensus 191 ~~~~~~~~~~~~~~~~~l~~aGf~~~~ 217 (292)
T 2aot_A 191 PQDDLCQYITSDDLTQMLDNLGLKYEC 217 (292)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHTCCEEE
T ss_pred cCCCcccCCCHHHHHHHHHHCCCceEE
Confidence 1112356778889997765
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.022 Score=45.68 Aligned_cols=106 Identities=13% Similarity=0.069 Sum_probs=65.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.....+||-||-|.=.++..|++.++....+ |+.|..++..+ .+.+|++...-.+..-++.-|+.++-. .+.
T Consensus 54 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~vD~~~~~~~---~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~- 125 (210)
T 3c3p_A 54 IKQPQLVVVPGDGLGCASWWFARAISISSRV--VMIDPDRDNVE---HARRMLHDNGLIDRVELQVGDPLGIAA--GQR- 125 (210)
T ss_dssp HHCCSEEEEESCGGGHHHHHHHTTSCTTCEE--EEEESCHHHHH---HHHHHHHHHSGGGGEEEEESCHHHHHT--TCC-
T ss_pred hhCCCEEEEEcCCccHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHCCCCceEEEEEecHHHHhc--cCC-
Confidence 3467899999977666677788877433455 45564444332 466676654322223344457765321 122
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
. ||.|+.+.+.. -...+++.+..+|++||.+.+.
T Consensus 126 ~-fD~v~~~~~~~-------------------~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 126 D-IDILFMDCDVF-------------------NGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp S-EEEEEEETTTS-------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred C-CCEEEEcCChh-------------------hhHHHHHHHHHhcCCCeEEEEE
Confidence 4 99999985421 1235778889999999998773
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.027 Score=47.15 Aligned_cols=108 Identities=10% Similarity=0.026 Sum_probs=65.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC--
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-- 93 (214)
....++||.||-|.=..+..|++.+..+..|++ .|..++.. ..+.+|++...-....-++.-||.++-. .+
T Consensus 77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~--iD~s~~~~---~~a~~~~~~~g~~~~i~~~~gda~~~l~--~l~~ 149 (247)
T 1sui_A 77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILA--MDINKENY---ELGLPVIKKAGVDHKIDFREGPALPVLD--EMIK 149 (247)
T ss_dssp HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEE--EESCCHHH---HHHHHHHHHTTCGGGEEEEESCHHHHHH--HHHH
T ss_pred hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEE--EECCHHHH---HHHHHHHHHcCCCCCeEEEECCHHHHHH--HHHh
Confidence 356789999997776677779988754445544 55433333 1356666553211112334446654311 11
Q ss_pred ---CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 ---SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ---~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....||.|+.+.+.. ....+|+.+..+|++||.|.+.
T Consensus 150 ~~~~~~~fD~V~~d~~~~-------------------~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 150 DEKNHGSYDFIFVDADKD-------------------NYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp SGGGTTCBSEEEECSCST-------------------THHHHHHHHHHHBCTTCCEEEE
T ss_pred ccCCCCCEEEEEEcCchH-------------------HHHHHHHHHHHhCCCCeEEEEe
Confidence 146799999885421 1235777888999999999774
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.095 Score=41.69 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=67.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||.||=|.=.++..|++..++...++ +.|..++..+ .+.+++..+...++ .+...|+... ...
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~--~vD~~~~~~~---~a~~~~~~~~~~~v-~~~~~d~~~~----~~~ 143 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVV--SIERIPELAE---KAERTLRKLGYDNV-IVIVGDGTLG----YEP 143 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEE--EEESCHHHHH---HHHHHHHHHTCTTE-EEEESCGGGC----CGG
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHhCCCCEEE--EEeCCHHHHH---HHHHHHHHcCCCCe-EEEECCcccC----CCC
Confidence 456788999999887777777888875434555 4554444432 35566655432233 3344465321 112
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
...||.|+.+.+..... ..+..+|+++|.+.++...+
T Consensus 144 ~~~fD~v~~~~~~~~~~----------------------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 144 LAPYDRIYTTAAGPKIP----------------------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp GCCEEEEEESSBBSSCC----------------------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCeeEEEECCchHHHH----------------------HHHHHHcCCCcEEEEEECCC
Confidence 46799999997654321 25678999999998886543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0051 Score=50.41 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~~~ 95 (214)
....+||-||=|.=.++..|++.. .. ..|+.|..+++.+ .+.++.+ ..|.. .+...|+.++.. .+..
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~--~~--~v~gvD~s~~~l~---~a~~~~~---~~~~~v~~~~~d~~~~~~--~~~~ 126 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAP--ID--EHWIIECNDGVFQ---RLRDWAP---RQTHKVIPLKGLWEDVAP--TLPD 126 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC--EE--EEEEEECCHHHHH---HHHHHGG---GCSSEEEEEESCHHHHGG--GSCT
T ss_pred CCCCeEEEEeccCCHHHHHHHhcC--CC--eEEEEcCCHHHHH---HHHHHHH---hcCCCeEEEecCHHHhhc--ccCC
Confidence 467899999966555666675432 12 4456775554442 2444332 33332 344557776521 2456
Q ss_pred CcccEEEE-cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIF-NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiF-NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+||.|+. .|+..-. ..+......+++.+..+|+|||.+.+.
T Consensus 127 ~~fD~V~~d~~~~~~~------------~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 127 GHFDGILYDTYPLSEE------------TWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp TCEEEEEECCCCCBGG------------GTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred CceEEEEECCcccchh------------hhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 78999999 5654111 013445677899999999999998755
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.057 Score=46.59 Aligned_cols=104 Identities=17% Similarity=0.173 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++++||-||=|.=.++..|++..+....++++-++ ++..+ .+.++++.+...++ .+..-|+.++. ..
T Consensus 72 ~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~---~a~~~~~~~g~~~v-~~~~~d~~~~~----~~ 141 (317)
T 1dl5_A 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS--RKICE---IAKRNVERLGIENV-IFVCGDGYYGV----PE 141 (317)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHH---HHHHHHHHTTCCSE-EEEESCGGGCC----GG
T ss_pred CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECC--HHHHH---HHHHHHHHcCCCCe-EEEECChhhcc----cc
Confidence 45678899999977666777788876422345554443 33331 36666655433333 34455776632 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..+||.|+.+.|..... ..+..+|+|||.+.|..
T Consensus 142 ~~~fD~Iv~~~~~~~~~----------------------~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP----------------------ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp GCCEEEEEECSBBSCCC----------------------HHHHHHEEEEEEEEEEB
T ss_pred CCCeEEEEEcCCHHHHH----------------------HHHHHhcCCCcEEEEEE
Confidence 45799999998764431 23566899999998884
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.027 Score=49.47 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++.+||-||-|.=.++..+++. + ...++|.-.+ +.+. .+.++++...-.+..-+...|+.++. + ..
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s--~~~~----~a~~~~~~~~l~~~v~~~~~d~~~~~----~-~~ 115 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAS--TMAQ----HAEVLVKSNNLTDRIVVIPGKVEEVS----L-PE 115 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECS--THHH----HHHHHHHHTTCTTTEEEEESCTTTCC----C-SS
T ss_pred CCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCH--HHHH----HHHHHHHHcCCCCcEEEEEcchhhCC----C-CC
Confidence 46789999997766666667775 2 3467776654 2322 35556654432123444556777653 2 25
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+||.||.+.+..... +. .+...+..+..+|+++|.+.++
T Consensus 116 ~~D~Ivs~~~~~~~~-------------~~-~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 116 QVDIIISEPMGYMLF-------------NE-RMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CEEEEEECCCBTTBT-------------TT-SHHHHHHHGGGGEEEEEEEESC
T ss_pred ceeEEEEeCchhcCC-------------hH-HHHHHHHHHHhhcCCCeEEEEe
Confidence 799999997743221 01 1234455688999999998654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.014 Score=48.73 Aligned_cols=108 Identities=10% Similarity=0.115 Sum_probs=68.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC--
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-- 93 (214)
....++||-||=|.=..+..||+.++.+..|++.-.+. +.. ..+.+|++.+.-.+..-+..-||.++-. .+
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~--~~~---~~a~~~~~~~g~~~~i~~~~gda~~~l~--~~~~ 130 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINE--GWT---KHAHPYWREAKQEHKIKLRLGPALDTLH--SLLN 130 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCC--SSC---CCSHHHHHHTTCTTTEEEEESCHHHHHH--HHHH
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCH--HHH---HHHHHHHHHcCCCCcEEEEEcCHHHHHH--HHhh
Confidence 45678999999777667777998875444555554443 222 3577777765433233444456655321 11
Q ss_pred --CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 --SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 --~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.|+.+.++. + ...+|+.+..+|++||.|.+.
T Consensus 131 ~~~~~~fD~V~~d~~~~-----------~--------~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 131 EGGEHQFDFIFIDADKT-----------N--------YLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp HHCSSCEEEEEEESCGG-----------G--------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCEeEEEEcCChH-----------H--------hHHHHHHHHHhcCCCeEEEEE
Confidence 136799999986621 0 123788889999999999873
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.048 Score=44.19 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=66.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCC---CCcEEEeecCChHHHHhcCccHHHHHHHHH-----hCCCEEEEccccccC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGS---ATNMVASSLDSERTLKTKHWTSQAHLQSLW-----SRGCLVLHGVNVHTM 87 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~---~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~-----~~g~~Vl~~VDAt~L 87 (214)
..++.+||-||-|.=.++..|++..+. ......++.|..+++.+ .+.++++.+. ..++.+ ..-|+.+.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~---~a~~~~~~~~~~~~~~~~v~~-~~~d~~~~ 157 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR---RSKANLNTDDRSMLDSGQLLI-VEGDGRKG 157 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHH---HHHHHHHHHHHHHHHHTSEEE-EESCGGGC
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHH---HHHHHHHhcCccccCCCceEE-EECCcccC
Confidence 456789999997776677778886642 00123455665454442 4666666543 334444 44566651
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
. .....||.|+.+.+.... ...+..+|++||.+.+++..
T Consensus 158 --~--~~~~~fD~I~~~~~~~~~----------------------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 158 --Y--PPNAPYNAIHVGAAAPDT----------------------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp --C--GGGCSEEEEEECSCBSSC----------------------CHHHHHTEEEEEEEEEEESC
T ss_pred --C--CcCCCccEEEECCchHHH----------------------HHHHHHHhcCCCEEEEEEec
Confidence 1 123679999998765321 13467889999999998765
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.015 Score=46.87 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=73.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC--
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT-- 92 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~-- 92 (214)
.++++.+||=+|-|-=+++..|++. ...|+|.-+.... + ..++.++ ..|+++......
T Consensus 22 ~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~----------~~~v~~~-~~D~~~~~~~~~~~ 81 (191)
T 3dou_A 22 VVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------E----------IAGVRFI-RCDIFKETIFDDID 81 (191)
T ss_dssp CSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------C----------CTTCEEE-ECCTTSSSHHHHHH
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------c----------CCCeEEE-EccccCHHHHHHHH
Confidence 3567899999996666666668776 3467777665421 1 1245544 457776432100
Q ss_pred --CC---CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 93 --LS---QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 93 --~~---~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
+. ..+||.|+.|.|-.... .... . ......++...+..|..+|+|||.+.+.+..+.
T Consensus 82 ~~~~~~~~~~~D~Vlsd~~~~~~g--~~~~--d-~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~ 143 (191)
T 3dou_A 82 RALREEGIEKVDDVVSDAMAKVSG--IPSR--D-HAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGD 143 (191)
T ss_dssp HHHHHHTCSSEEEEEECCCCCCCS--CHHH--H-HHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred HHhhcccCCcceEEecCCCcCCCC--Cccc--C-HHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCC
Confidence 11 13899999998644321 1111 1 123456788899999999999999998887765
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.025 Score=46.43 Aligned_cols=110 Identities=12% Similarity=0.107 Sum_probs=66.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC-CCC----
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM-DRH---- 90 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L-~~~---- 90 (214)
.....+||-||-|.=.++..|++.++....+++ .|..++..+ .+.++++.....+...+...|+.+. ...
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~--vD~~~~~~~---~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~ 132 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILC--CDVSEEWTN---VARKYWKENGLENKIFLKLGSALETLQVLIDSK 132 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEE--EESCHHHHH---HHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCS
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEE--EECCHHHHH---HHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhc
Confidence 346789999998877777789988754445555 454343331 3555555432112133344465542 100
Q ss_pred ------CCCCC--CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 ------PTLSQ--MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 ------~~~~~--~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+.. .+||.|+.+++. . -+..+|+.+..+|++||.+.+.
T Consensus 133 ~~~~~~~~f~~~~~~fD~I~~~~~~---------~----------~~~~~l~~~~~~L~pgG~lv~~ 180 (239)
T 2hnk_A 133 SAPSWASDFAFGPSSIDLFFLDADK---------E----------NYPNYYPLILKLLKPGGLLIAD 180 (239)
T ss_dssp SCCGGGTTTCCSTTCEEEEEECSCG---------G----------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccccCCCCCcCEEEEeCCH---------H----------HHHHHHHHHHHHcCCCeEEEEE
Confidence 11222 679999988421 0 1236788899999999999876
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.074 Score=44.39 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=77.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+.....+||-||=|.=.++..|++ . +..+ ++.|..+++.+ .+..++ .++.+. ..|+.++. +
T Consensus 54 ~~~~~~~vLDiGcG~G~~~~~l~~-~--~~~v--~gvD~s~~~~~---~a~~~~-----~~~~~~-~~d~~~~~----~- 114 (279)
T 3ccf_A 54 NPQPGEFILDLGCGTGQLTEKIAQ-S--GAEV--LGTDNAATMIE---KARQNY-----PHLHFD-VADARNFR----V- 114 (279)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHH-T--TCEE--EEEESCHHHHH---HHHHHC-----TTSCEE-ECCTTTCC----C-
T ss_pred CCCCCCEEEEecCCCCHHHHHHHh-C--CCeE--EEEECCHHHHH---HHHhhC-----CCCEEE-ECChhhCC----c-
Confidence 345778999999766666667887 2 3344 45564333331 122222 244443 44776653 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP------------------- 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P------------------- 155 (214)
..+||.|+.++...-.. + ...+++.+..+|+|||.+.++......
T Consensus 115 ~~~fD~v~~~~~l~~~~----d------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (279)
T 3ccf_A 115 DKPLDAVFSNAMLHWVK----E------------PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHN 178 (279)
T ss_dssp SSCEEEEEEESCGGGCS----C------------HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCC
T ss_pred CCCcCEEEEcchhhhCc----C------------HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCcc
Confidence 46899999987543221 0 235778889999999999876543111
Q ss_pred ------C---CcccHhhHHHhcCCEEEEEecC
Q 041136 156 ------Y---NQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 156 ------y---~~W~i~~lA~~~gl~l~~~~~F 178 (214)
. +.-.+..+.+++||.......+
T Consensus 179 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 179 PQALNPWYFPSIGEYVNILEKQGFDVTYAALF 210 (279)
T ss_dssp GGGGCCCCCCCHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccCcCceeCCCHHHHHHHHHHcCCEEEEEEEe
Confidence 0 1112566788889988775544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.033 Score=44.79 Aligned_cols=136 Identities=8% Similarity=0.008 Sum_probs=74.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH------------HhCCCEEEEccc
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL------------WSRGCLVLHGVN 83 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L------------~~~g~~Vl~~VD 83 (214)
.....+||-||=|.=-++..||+. + . -.|+.|..+++.+ .+.++.... ...++.+ ..-|
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~-g--~--~V~gvD~S~~~l~---~a~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~d 90 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ-G--Y--HVVGAELSEAAVE---RYFTERGEQPHITSQGDFKVYAAPGIEI-WCGD 90 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH-C--C--EEEEEEECHHHHH---HHHHHHCSCSEEEEETTEEEEECSSSEE-EEEC
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC-C--C--eEEEEeCCHHHHH---HHHHHccCCcccccccccccccCCccEE-EECc
Confidence 357789999995544445558875 3 2 4667784343332 233322110 0123443 3457
Q ss_pred cccCCCCCCCCC-CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCE-EEEEecC------CCC
Q 041136 84 VHTMDRHPTLSQ-MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGE-VHVTLRD------DHP 155 (214)
Q Consensus 84 At~L~~~~~~~~-~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~-i~VTl~~------~~P 155 (214)
+.++. +.. .+||.|+.+.-..-. +......+++.+..+|+|||. +.+++.- +.|
T Consensus 91 ~~~l~----~~~~~~fD~v~~~~~l~~l--------------~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~ 152 (203)
T 1pjz_A 91 FFALT----ARDIGHCAAFYDRAAMIAL--------------PADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPP 152 (203)
T ss_dssp CSSST----HHHHHSEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCC
T ss_pred cccCC----cccCCCEEEEEECcchhhC--------------CHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCC
Confidence 77664 222 679999975432211 223456788899999999999 4555432 333
Q ss_pred CC--cccHhhHHHhcCCEEEEEecCC
Q 041136 156 YN--QWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 156 y~--~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+. .-.+..+... |+.+......+
T Consensus 153 ~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 153 FSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp CCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCHHHHHHHhcC-CcEEEEecccc
Confidence 32 2234444444 88776654433
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.032 Score=45.56 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=64.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||=|.=.++..|++. + .++ ++.|..++..+ .+.+++ . .......+...|+.++. +.
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~v--~~vD~s~~~~~---~a~~~~-~-~~~~~~~~~~~d~~~~~----~~ 101 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-G--YRY--IALDADAAMLE---VFRQKI-A-GVDRKVQVVQADARAIP----LP 101 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-T--CEE--EEEESCHHHHH---HHHHHT-T-TSCTTEEEEESCTTSCC----SC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-C--CEE--EEEECCHHHHH---HHHHHh-h-ccCCceEEEEcccccCC----CC
Confidence 4567889999996665566667765 2 344 45564343331 233333 0 11122344555776653 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...||.|+.++.-.-.. -...+++.+..+|++||.+.++..
T Consensus 102 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~~ 142 (263)
T 2yqz_A 102 DESVHGVIVVHLWHLVP----------------DWPKVLAEAIRVLKPGGALLEGWD 142 (263)
T ss_dssp TTCEEEEEEESCGGGCT----------------THHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECCchhhcC----------------CHHHHHHHHHHHCCCCcEEEEEec
Confidence 67899999986533221 024577888999999999988743
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.083 Score=41.75 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=65.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-+|=|.=.++..|++. + ...+ ++.|..++..+ .+.+|+. ++.++ .-|+.++. .
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~-~~~v--~~vD~~~~~~~---~a~~~~~-----~~~~~-~~d~~~~~-------~ 109 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-G-AESV--TAFDIDPDAIE---TAKRNCG-----GVNFM-VADVSEIS-------G 109 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-T-BSEE--EEEESCHHHHH---HHHHHCT-----TSEEE-ECCGGGCC-------C
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-C-CCEE--EEEECCHHHHH---HHHHhcC-----CCEEE-ECcHHHCC-------C
Confidence 46789999996665666667765 3 2234 55564333331 3444443 45544 44777652 5
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
+||.||.|.|..-... .....|++.+..++ |.+.+... |.....+..++...| .+...
T Consensus 110 ~~D~v~~~~p~~~~~~--------------~~~~~~l~~~~~~~---g~~~~~~~---~~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 110 KYDTWIMNPPFGSVVK--------------HSDRAFIDKAFETS---MWIYSIGN---AKARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp CEEEEEECCCC---------------------CHHHHHHHHHHE---EEEEEEEE---GGGHHHHHHHHHHHE-EEEEE
T ss_pred CeeEEEECCCchhccC--------------chhHHHHHHHHHhc---CcEEEEEc---CchHHHHHHHHHHCC-CEEEE
Confidence 7999999999543210 11134566666666 55655542 323333556677777 65543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.044 Score=43.49 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=59.6
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
+..+||-||=|.=.++..| + ..+ .|+.|..++..+ .+.++. .++.+ ...|+.++. +...+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~-~~~--v~~vD~s~~~~~---~a~~~~-----~~~~~-~~~d~~~~~----~~~~~ 95 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----P-YPQ--KVGVEPSEAMLA---VGRRRA-----PEATW-VRAWGEALP----FPGES 95 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----C-CSE--EEEECCCHHHHH---HHHHHC-----TTSEE-ECCCTTSCC----SCSSC
T ss_pred CCCeEEEECCCCCHhHHhC----C-CCe--EEEEeCCHHHHH---HHHHhC-----CCcEE-EEcccccCC----CCCCc
Confidence 6789999986554555444 2 114 455665444332 233322 34554 344777653 45678
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
||.|+.+....-.. -...+++.+..+|++||.+.|+..
T Consensus 96 fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 96 FDVVLLFTTLEFVE----------------DVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp EEEEEEESCTTTCS----------------CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEEcChhhhcC----------------CHHHHHHHHHHHcCCCCEEEEEec
Confidence 99999986533221 123677888999999999988753
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.015 Score=48.11 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=66.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC--
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL-- 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~-- 93 (214)
....++||.||-|.=..+..|++.++....++ +.|..++..+ .+.+|++...-.+...++.-||.++-. .+
T Consensus 68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~--~iD~~~~~~~---~a~~~~~~~g~~~~i~~~~gda~~~l~--~l~~ 140 (237)
T 3c3y_A 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKIT--AIDFDREAYE---IGLPFIRKAGVEHKINFIESDAMLALD--NLLQ 140 (237)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEE--EEESCHHHHH---HHHHHHHHTTCGGGEEEEESCHHHHHH--HHHH
T ss_pred hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEE--EEECCHHHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHH--HHHh
Confidence 45678999999777667777998875444554 4554444331 356666543211123344446654311 11
Q ss_pred ---CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 ---SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ---~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....||.|+.+.++. ....|++.+..+|++||.|.+.
T Consensus 141 ~~~~~~~fD~I~~d~~~~-------------------~~~~~l~~~~~~L~pGG~lv~d 180 (237)
T 3c3y_A 141 GQESEGSYDFGFVDADKP-------------------NYIKYHERLMKLVKVGGIVAYD 180 (237)
T ss_dssp STTCTTCEEEEEECSCGG-------------------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCCcCEEEECCchH-------------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 146799999874320 1246788889999999998774
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.07 Score=45.48 Aligned_cols=116 Identities=16% Similarity=0.056 Sum_probs=68.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh------CCCEEEEccccccCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS------RGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~------~g~~Vl~~VDAt~L~~~ 90 (214)
.+..+||-||=|.=.++..|++.. ...+++ .|..++..+ .+.+++..... ....-+...|+.++.-.
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~--~~~v~g--vD~s~~~l~---~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 105 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGR--INKLVC--TDIADVSVK---QCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI 105 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTT--CSEEEE--EESCHHHHH---HHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST
T ss_pred CCCCEEEEECCCCcHHHHHHHhcC--CCEEEE--EeCCHHHHH---HHHHHHHHhhhcccccccceEEEEEecccccchh
Confidence 367799999966555566677632 335554 564343332 35555554421 11234455677776421
Q ss_pred CCCC--CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 91 PTLS--QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 91 ~~~~--~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..+. ..+||.|+.++.-.-. -.+..-+..+++.+..+|+|||.+.++..
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~------------~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 106 DKFRDPQMCFDICSCQFVCHYS------------FESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TTCSSTTCCEEEEEEETCGGGG------------GGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hhcccCCCCEEEEEEecchhhc------------cCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 1232 3589999998743211 01234466889999999999999988754
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.015 Score=51.60 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=77.4
Q ss_pred CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC----C---
Q 041136 19 NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH----P--- 91 (214)
Q Consensus 19 ~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~----~--- 91 (214)
..+||=+|=|.=.|++.||+.. ..+ ++.|..++..+ .+.+|++.+.-.++ -+..-||.++... .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~---~~V--~gvd~~~~ai~---~a~~n~~~ng~~~v-~~~~~d~~~~~~~~~~~~~~~ 284 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF---DRV--LATEIAKPSVA---AAQYNIAANHIDNV-QIIRMAAEEFTQAMNGVREFN 284 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS---SEE--EEECCCHHHHH---HHHHHHHHTTCCSE-EEECCCSHHHHHHHSSCCCCT
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEE--EEEECCHHHHH---HHHHHHHHcCCCce-EEEECCHHHHHHHHhhccccc
Confidence 4679888744444444577642 244 45665444442 57778765432233 3455577654210 0
Q ss_pred -----CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cccHhhHH
Q 041136 92 -----TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QWNVMGLA 165 (214)
Q Consensus 92 -----~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W~i~~lA 165 (214)
.+....||.||.|.|-.|.. .+ +.++|+++|.|.+.-|+ |.. .-++..+.
T Consensus 285 ~l~~~~~~~~~fD~Vv~dPPr~g~~--------------~~--------~~~~l~~~g~ivyvsc~--p~t~ard~~~l~ 340 (369)
T 3bt7_A 285 RLQGIDLKSYQCETIFVDPPRSGLD--------------SE--------TEKMVQAYPRILYISCN--PETLCKNLETLS 340 (369)
T ss_dssp TGGGSCGGGCCEEEEEECCCTTCCC--------------HH--------HHHHHTTSSEEEEEESC--HHHHHHHHHHHH
T ss_pred cccccccccCCCCEEEECcCccccH--------------HH--------HHHHHhCCCEEEEEECC--HHHHHHHHHHHh
Confidence 01113799999999987641 11 23344578888666554 322 22344454
Q ss_pred HhcCCEEEEEecCCCCCCCCCccc
Q 041136 166 DKLGLVLKEKVEFLKQDFPGYHNK 189 (214)
Q Consensus 166 ~~~gl~l~~~~~F~~~~yPgY~~~ 189 (214)
.||.+.+..+|| +||.=.|-
T Consensus 341 --~~y~~~~~~~~D--~FP~T~Hv 360 (369)
T 3bt7_A 341 --QTHKVERLALFD--QFPYTHHM 360 (369)
T ss_dssp --HHEEEEEEEEEC--CSTTSSCC
T ss_pred --hCcEEEEEEeec--cCCCCCcE
Confidence 269999999998 79876664
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.15 Score=40.39 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||=|.=.++..|++. + .++++ .|..++..+ .+.+|++.+.-.+ ..+..-|+.+.. ..
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~-~--~~v~~--vD~~~~~~~---~a~~~~~~~~~~~-v~~~~~d~~~~~----~~ 140 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHL-V--QHVCS--VERIKGLQW---QARRRLKNLDLHN-VSTRHGDGWQGW----QA 140 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH-S--SEEEE--EESCHHHHH---HHHHHHHHTTCCS-EEEEESCGGGCC----GG
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEE--EecCHHHHH---HHHHHHHHcCCCc-eEEEECCcccCC----cc
Confidence 4567899999997766667778877 2 35555 454344332 3666666543223 334445666532 23
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
..+||.|+.+.+..... + .+..+|++||.+.+++.+
T Consensus 141 ~~~~D~i~~~~~~~~~~----~------------------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIP----T------------------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCSSCC----T------------------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchhhhh----H------------------HHHHhcccCcEEEEEEcC
Confidence 56899999974432211 0 256789999999999776
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.043 Score=44.79 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++.+. +..++++ |..+++.+ .+.++ ..++.+ ...|+.++. .
T Consensus 30 ~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~--D~s~~~~~---~a~~~-----~~~~~~-~~~d~~~~~-----~ 92 (259)
T 2p35_A 30 PLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGI--DSDDDMLE---KAADR-----LPNTNF-GKADLATWK-----P 92 (259)
T ss_dssp CCSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEE--ESCHHHHH---HHHHH-----STTSEE-EECCTTTCC-----C
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEE--ECCHHHHH---HHHHh-----CCCcEE-EECChhhcC-----c
Confidence 346778999999777677777888873 3456555 53333321 12222 123443 445777654 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...||.|+.++.-.-.. -...+++.+..+|++||.+.++..
T Consensus 93 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 93 AQKADLLYANAVFQWVP----------------DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp SSCEEEEEEESCGGGST----------------THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCCcCEEEEeCchhhCC----------------CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 46799999987543221 123577888999999999988753
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.15 Score=44.71 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=64.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++.++.+|. +.+.+. +.+ + .++.+ ..-|+.+ . +..
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~---~~~~~~~D~-~~~~~~---a~~----~--~~v~~-~~~d~~~-~----~~~ 267 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYP---LIKGINFDL-PQVIEN---APP----L--SGIEH-VGGDMFA-S----VPQ 267 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC----C--TTEEE-EECCTTT-C----CCC
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCC---CCeEEEeCh-HHHHHh---hhh----c--CCCEE-EeCCccc-C----CCC
Confidence 67789999999777677777998874 467888898 444421 111 1 23433 3346654 1 222
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+.+.--.-.. ..-...+++.+..+|+|||.+.|.
T Consensus 268 --~D~v~~~~~lh~~~--------------d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 268 --GDAMILKAVCHNWS--------------DEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp --EEEEEEESSGGGSC--------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCEEEEecccccCC--------------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999987533221 112346778889999999998766
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.32 Score=40.15 Aligned_cols=127 Identities=14% Similarity=0.154 Sum_probs=75.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+..+..+||-||=|.=.++..|++ .+..+ |+.|..++..+ ..+......+...|+.++. +.
T Consensus 31 ~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v--~gvD~s~~~~~----------~a~~~~~~~~~~~d~~~~~----~~ 91 (261)
T 3ege_A 31 NLPKGSVIADIGAGTGGYSVALAN---QGLFV--YAVEPSIVMRQ----------QAVVHPQVEWFTGYAENLA----LP 91 (261)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHT---TTCEE--EEECSCHHHHH----------SSCCCTTEEEECCCTTSCC----SC
T ss_pred CCCCCCEEEEEcCcccHHHHHHHh---CCCEE--EEEeCCHHHHH----------HHHhccCCEEEECchhhCC----CC
Confidence 446789999999777667777876 22344 55664443332 1111112334455776653 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-CCCCCcc--------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-DHPYNQW-------------- 159 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-~~Py~~W-------------- 159 (214)
.++||.|+.++.-.... -...+++.+..+|+ ||.+.+.-.. ......|
T Consensus 92 ~~~fD~v~~~~~l~~~~----------------~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (261)
T 3ege_A 92 DKSVDGVISILAIHHFS----------------HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALR 154 (261)
T ss_dssp TTCBSEEEEESCGGGCS----------------SHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHT
T ss_pred CCCEeEEEEcchHhhcc----------------CHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhh
Confidence 67899999987532211 12367788899999 9977555332 1111222
Q ss_pred ------cHhhHHHhcCCEEEEEecC
Q 041136 160 ------NVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 160 ------~i~~lA~~~gl~l~~~~~F 178 (214)
.+. +.+++||...+..++
T Consensus 155 ~~~~~~~~~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 155 FLPLDEQIN-LLQENTKRRVEAIPF 178 (261)
T ss_dssp SCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred hCCCHHHHH-HHHHcCCCceeEEEe
Confidence 144 788899977765554
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.052 Score=44.96 Aligned_cols=100 Identities=15% Similarity=0.147 Sum_probs=62.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-||=|.=.++..|++. + .+ .|+.|..++..+ .+.++.. + .+...|+.++. +....
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~--~~--v~gvD~s~~~l~---~a~~~~~-----~--~~~~~d~~~~~----~~~~~ 114 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER-G--FE--VVLVDPSKEMLE---VAREKGV-----K--NVVEAKAEDLP----FPSGA 114 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT-T--CE--EEEEESCHHHHH---HHHHHTC-----S--CEEECCTTSCC----SCTTC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc-C--Ce--EEEEeCCHHHHH---HHHhhcC-----C--CEEECcHHHCC----CCCCC
Confidence 6789999997766666667765 2 34 455664443331 1222211 2 25666777654 44678
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
||.|+.+++-.. .... ...+++.+..+|++||.+.++..
T Consensus 115 fD~v~~~~~~~~--------------~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 115 FEAVLALGDVLS--------------YVEN-KDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp EEEEEECSSHHH--------------HCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEEcchhhh--------------cccc-HHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998653211 0011 56778889999999999988753
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=95.05 E-value=0.023 Score=48.40 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=61.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH----HHHhCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ----SLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~----~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
.+.++||.||-|+=..++.++++ + ..+++.-+|. ++.+ -+.+++. .+....+.++ .-||.+.-
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~--~~i~---~ar~~~~~~~~~~~~~rv~~~-~~D~~~~~---- 137 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADE--KILD---SFISFFPHFHEVKNNKNFTHA-KQLLDLDI---- 137 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCH--HHHG---GGTTTSTTHHHHHTCTTEEEE-SSGGGSCC----
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCH--HHHH---HHHHHHHhhccccCCCeEEEE-echHHHHH----
Confidence 35689999999998888888877 4 4565555543 3321 1222222 2322334554 44776531
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+||.||.+.+. . . .|++.+..+|++||.+.+.
T Consensus 138 ---~~fD~Ii~d~~d---------p----~--------~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 138 ---KKYDLIFCLQEP---------D----I--------HRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ---CCEEEEEESSCC---------C----H--------HHHHHHHTTEEEEEEEEEE
T ss_pred ---hhCCEEEECCCC---------h----H--------HHHHHHHHhcCCCcEEEEE
Confidence 679999998421 0 1 1999999999999998775
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.086 Score=42.98 Aligned_cols=105 Identities=15% Similarity=0.111 Sum_probs=64.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+..+||-||-|.=.++..|++..+ ..+++ .|..+++.+ .+.++++.+.-.++ .+...|+. . . ...
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~--vD~~~~~~~---~a~~~~~~~~~~~v-~~~~~d~~-~-~--~~~ 155 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEIVK--TDVYT--IERIPELVE---FAKRNLERAGVKNV-HVILGDGS-K-G--FPP 155 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEE--EESCHHHHH---HHHHHHHHTTCCSE-EEEESCGG-G-C--CGG
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEE--EeCCHHHHH---HHHHHHHHcCCCCc-EEEECCcc-c-C--CCC
Confidence 456788999999887677778888875 35554 553333331 35666655432233 33444552 1 1 112
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
..+||.||.+.+-.... ..+..+|++||.+.++.-..
T Consensus 156 ~~~fD~Ii~~~~~~~~~----------------------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIP----------------------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GCCEEEEEECSBBSSCC----------------------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCccEEEECCcHHHHH----------------------HHHHHhcCCCcEEEEEEecC
Confidence 34599999987653321 13567899999999987653
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.018 Score=52.35 Aligned_cols=107 Identities=12% Similarity=0.020 Sum_probs=67.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC-EEEEccccccCCC-CCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC-LVLHGVNVHTMDR-HPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~-~Vl~~VDAt~L~~-~~~~~~ 95 (214)
.+.+||=++=|.=.||.-+|+..+.+ --+++.|..++.. ..+.+|++.+.-.+. ..++.-||.++-. . + .
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av---~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~--~-~ 123 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAI---EIMKENFKLNNIPEDRYEIHGMEANFFLRKE--W-G 123 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHH---HHHHHHHHHTTCCGGGEEEECSCHHHHHHSC--C-S
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHH---HHHHHHHHHhCCCCceEEEEeCCHHHHHHHh--h-C
Confidence 46789887644444444466654322 3455666555444 257788887653332 4456668876532 1 1 4
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
..||+|+-|.| |. ...|+.+|.++|+++|.+++|..+
T Consensus 124 ~~fD~V~lDP~--g~------------------~~~~l~~a~~~Lk~gGll~~t~t~ 160 (392)
T 3axs_A 124 FGFDYVDLDPF--GT------------------PVPFIESVALSMKRGGILSLTATD 160 (392)
T ss_dssp SCEEEEEECCS--SC------------------CHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCcEEEECCC--cC------------------HHHHHHHHHHHhCCCCEEEEEecc
Confidence 57999999974 32 124777899999999988998644
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.022 Score=46.87 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC-CCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM-DRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L-~~~~~~~~ 95 (214)
....+||.||-|.=.++..|++.++....+ |+.|..++..+ .+.++++...-.....+..-|+.+. ... ....
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v--~~iD~~~~~~~---~a~~~~~~~g~~~~i~~~~~d~~~~l~~l-~~~~ 144 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQI--IACDQDPNATA---IAKKYWQKAGVAEKISLRLGPALATLEQL-TQGK 144 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEE--EEEESCHHHHH---HHHHHHHHHTCGGGEEEEESCHHHHHHHH-HTSS
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEE--EEEECCHHHHH---HHHHHHHHcCCCCcEEEEEcCHHHHHHHH-HhcC
Confidence 457899999977666677788877533344 55564444331 3566665442212223334455431 110 0112
Q ss_pred --CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 --MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 --~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..||.|+.+.+. . -...+++.+..+|++||.|.+.
T Consensus 145 ~~~~fD~V~~d~~~----~---------------~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 145 PLPEFDLIFIDADK----R---------------NYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp SCCCEEEEEECSCG----G---------------GHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCcCEEEECCCH----H---------------HHHHHHHHHHHHcCCCeEEEEe
Confidence 679999988651 0 1234788889999999999874
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.023 Score=51.13 Aligned_cols=104 Identities=13% Similarity=-0.027 Sum_probs=67.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH---------------HhCCCEEEEcc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL---------------WSRGCLVLHGV 82 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L---------------~~~g~~Vl~~V 82 (214)
.+.+||=+|=|.=.++..+|+..+ +..| ++.|..++.. ..+.+|++.+ .-.+ ..+..-
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V--~avDi~~~av---~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~ 119 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETP-AEEV--WLNDISEDAY---ELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHD 119 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEE--EEEESCHHHH---HHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEES
T ss_pred CCCEEEECCCchhHHHHHHHHhCC-CCeE--EEEECCHHHH---HHHHHHHHHhcccccccccccccccCCCc-eEEEcC
Confidence 567899888666666666887764 3344 4556444443 2578898877 2222 334455
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
||.++-.. ....||.|+.|.|... ..|+.+|..+|+++|.++||..
T Consensus 120 Da~~~~~~---~~~~fD~I~lDP~~~~--------------------~~~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 120 DANRLMAE---RHRYFHFIDLDPFGSP--------------------MEFLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp CHHHHHHH---STTCEEEEEECCSSCC--------------------HHHHHHHHHHEEEEEEEEEEEC
T ss_pred cHHHHHHh---ccCCCCEEEeCCCCCH--------------------HHHHHHHHHhcCCCCEEEEEee
Confidence 77665321 1357999998766321 3678889999999999999853
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.14 Score=45.90 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=79.0
Q ss_pred CCCCCeEE--EEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh-----CCCEEEEccccccCC
Q 041136 16 YTNNQRIL--LVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS-----RGCLVLHGVNVHTMD 88 (214)
Q Consensus 16 ~~~~~~IL--lVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~-----~g~~Vl~~VDAt~L~ 88 (214)
-.++++|| +-|=|.=|.. ||... ....|+|.-.+. .-+. ...+|++.+.. .....+...|++++.
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~--la~~~-~~~~l~A~D~~~-~R~~----~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~ 217 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLA--LLQTG-CCRNLAANDLSP-SRIA----RLQKILHSYVPEEIRDGNQVRVTSWDGRKWG 217 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHH--HHHTT-CEEEEEEECSCH-HHHH----HHHHHHHHHSCTTTTTSSSEEEECCCGGGHH
T ss_pred CCCCCEEEEecCCccHHHHH--HHHhc-CCCcEEEEcCCH-HHHH----HHHHHHHHhhhhhhccCCceEEEeCchhhcc
Confidence 45566775 3456776654 56543 223465543332 2222 34566666522 123556677888765
Q ss_pred CCCCCCCCcccEEEEcCCCCCCCC------C-CCc-ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCccc
Q 041136 89 RHPTLSQMKFDVIIFNFPHAGHSP------P-LSE-QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWN 160 (214)
Q Consensus 89 ~~~~~~~~~FD~IiFNFPH~G~~~------~-~~~-~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~ 160 (214)
. +....||+|+-+=|+.|.+. + ... .....+.....|=...+.+|..+|++||.+.-+-|.=.|-..-.
T Consensus 218 ~---~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~ 294 (359)
T 4fzv_A 218 E---LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEY 294 (359)
T ss_dssp H---HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHH
T ss_pred h---hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHH
Confidence 3 34578999999999998310 0 111 11122222233445678899999999999988888877754444
Q ss_pred Hh
Q 041136 161 VM 162 (214)
Q Consensus 161 i~ 162 (214)
++
T Consensus 295 vV 296 (359)
T 4fzv_A 295 VV 296 (359)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.2 Score=41.48 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=62.0
Q ss_pred CCCeEEEEecCchhHHHHHHHH---hCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARA---FGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~---~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...+||-||-|.=..+..||+. .+++..|++.-++. ++.+ .+. .+ ..++.++.+ |+.++...+.+.
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~--~~l~---~a~----~~-~~~v~~~~g-D~~~~~~l~~~~ 149 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL--SRCQ---IPA----SD-MENITLHQG-DCSDLTTFEHLR 149 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC--TTCC---CCG----GG-CTTEEEEEC-CSSCSGGGGGGS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCCh--HHHH---HHh----cc-CCceEEEEC-cchhHHHHHhhc
Confidence 4579999997766666678876 34445666554443 2221 111 12 134666555 887742111233
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHh-ccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGRE-MLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~-lL~~~G~i~VT 149 (214)
..+||.|+.+..|. . +..+|..+.. +|++||.+.+.
T Consensus 150 ~~~fD~I~~d~~~~-~------------------~~~~l~~~~r~~LkpGG~lv~~ 186 (236)
T 2bm8_A 150 EMAHPLIFIDNAHA-N------------------TFNIMKWAVDHLLEEGDYFIIE 186 (236)
T ss_dssp SSCSSEEEEESSCS-S------------------HHHHHHHHHHHTCCTTCEEEEC
T ss_pred cCCCCEEEECCchH-h------------------HHHHHHHHHHhhCCCCCEEEEE
Confidence 44799999988762 0 1236677775 99999999885
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.018 Score=48.27 Aligned_cols=115 Identities=23% Similarity=0.207 Sum_probs=67.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CCEEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~Vl~~VDAt~L~~~~~~ 93 (214)
....+||-||=|.=.++..|++. + .+ .|+.|..++..+ .+.+++...... ....+...|+..+... .+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~--v~gvD~s~~~l~---~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~ 126 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEE-G--FS--VTSVDASDKMLK---YALKERWNRRKEPAFDKWVIEEANWLTLDKD-VP 126 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHHHHTTTSHHHHTCEEEECCGGGHHHH-SC
T ss_pred cCCCEEEEecCCCCHHHHHHHHC-C--Ce--EEEEECCHHHHH---HHHHhhhhcccccccceeeEeecChhhCccc-cc
Confidence 46789999996666667778776 2 24 455664333331 244444221111 1233445566665311 03
Q ss_pred CCCcccEEEEc---CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 94 SQMKFDVIIFN---FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 94 ~~~~FD~IiFN---FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
...+||.|+.+ +-|+.... ...+.+..+++.+..+|+|||.+.++..
T Consensus 127 ~~~~fD~V~~~g~~l~~~~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 127 AGDGFDAVICLGNSFAHLPDSK-----------GDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CTTCEEEEEECTTCGGGSCCSS-----------SSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCeEEEEEcChHHhhcCccc-----------cCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 45789999986 23433210 0123466788889999999999988854
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.35 Score=42.40 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=80.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++...+||=||=|.=.++.+|++++. ++.+|.+|..+.+. .+.++++.-...++.+. .-|.-+ . .+
T Consensus 176 ~~~~~~~v~DvGgG~G~~~~~l~~~~p---~~~~~~~dlp~v~~----~a~~~~~~~~~~rv~~~-~gD~~~---~-~~- 242 (353)
T 4a6d_A 176 DLSVFPLMCDLGGGAGALAKECMSLYP---GCKITVFDIPEVVW----TAKQHFSFQEEEQIDFQ-EGDFFK---D-PL- 242 (353)
T ss_dssp CGGGCSEEEEETCTTSHHHHHHHHHCS---SCEEEEEECHHHHH----HHHHHSCC--CCSEEEE-ESCTTT---S-CC-
T ss_pred CcccCCeEEeeCCCCCHHHHHHHHhCC---CceeEeccCHHHHH----HHHHhhhhcccCceeee-cCcccc---C-CC-
Confidence 577788999999777777888999985 56788899755443 34444432112233333 334432 1 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---C-------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---D------------------- 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~------------------- 152 (214)
..+|.|++..=-.... | +-....++.+...|+|+|.+.|.=. +
T Consensus 243 -~~~D~~~~~~vlh~~~----d----------~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~ 307 (353)
T 4a6d_A 243 -PEADLYILARVLHDWA----D----------GKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQT 307 (353)
T ss_dssp -CCCSEEEEESSGGGSC----H----------HHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSS
T ss_pred -CCceEEEeeeecccCC----H----------HHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhC
Confidence 2368888754322221 1 1123345678888999999877521 1
Q ss_pred -CCCCCcccHhhHHHhcCCEEEEEec
Q 041136 153 -DHPYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 153 -~~Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
|..++.=++..+.+++||...+..+
T Consensus 308 ~g~ert~~e~~~ll~~AGf~~v~v~~ 333 (353)
T 4a6d_A 308 EGQERTPTHYHMLLSSAGFRDFQFKK 333 (353)
T ss_dssp SCCCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 1122333466789999999888654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.11 Score=44.44 Aligned_cols=110 Identities=8% Similarity=0.093 Sum_probs=64.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC-CCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR-HPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~-~~~~ 93 (214)
+..++.+||-||=|.=.++..|++. + ..| |+.|..+++.+ .+.+++... ...+|+.++.. .+..
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~-g--~~V--~gvD~S~~ml~---~Ar~~~~~~-------~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALER-G--ASV--TVFDFSQRMCD---DLAEALADR-------CVTIDLLDITAEIPKE 106 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHT-T--CEE--EEEESCHHHHH---HHHHHTSSS-------CCEEEECCTTSCCCGG
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhc-C--CEE--EEEECCHHHHH---HHHHHHHhc-------cceeeeeecccccccc
Confidence 5567889999996655566668775 2 344 45664444432 244433221 23445554432 0011
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
...+||.|+.|+.-.-. ..+-+...++....+| |||.+.++...+.
T Consensus 107 ~~~~fD~Vv~~~~l~~~--------------~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRF--------------TTEEARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp GTTCCSEEEEESCGGGS--------------CHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred cCCCccEEEEhhhhHhC--------------CHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 24689999998653211 1122445667777889 9999999977654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.089 Score=40.70 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+++||.||.|. +..|..+++.+ .+.++. . ..+. +...|+.++... .+.
T Consensus 9 g~~~g~~vL~~~~g~-------------------v~vD~s~~ml~---~a~~~~---~-~~~~-~~~~d~~~~~~~-~~~ 60 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS-------------------SPVEALKGLVD---KLQALT---G-NEGR-VSVENIKQLLQS-AHK 60 (176)
T ss_dssp TCCTTSEEEEEECTT-------------------SCHHHHHHHHH---HHHHHT---T-TTSE-EEEEEGGGGGGG-CCC
T ss_pred CCCCCCEEEEecCCc-------------------eeeeCCHHHHH---HHHHhc---c-cCcE-EEEechhcCccc-cCC
Confidence 356789999999985 12554333331 122221 1 1243 445577776421 125
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC----CCC---cccHhhHHHh
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH----PYN---QWNVMGLADK 167 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~----Py~---~W~i~~lA~~ 167 (214)
..+||.|+.++--.-... + +..+++.+..+|+|||.+.+...... +.. .=.+..+.+.
T Consensus 61 ~~~fD~V~~~~~l~~~~~---~------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 125 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTTL---H------------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTL 125 (176)
T ss_dssp SSCEEEEEECCSTTCCCC---C------------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHH
T ss_pred CCCEeEEEECChhhhccc---C------------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHH
Confidence 678999998764322100 0 14577888999999999988532111 111 1135677888
Q ss_pred cCC
Q 041136 168 LGL 170 (214)
Q Consensus 168 ~gl 170 (214)
+||
T Consensus 126 aGf 128 (176)
T 2ld4_A 126 SGL 128 (176)
T ss_dssp TTC
T ss_pred CCC
Confidence 999
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.028 Score=45.85 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=63.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC-
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS- 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~- 94 (214)
...+.+||-||=|.=.++..|++... ++++ .|..++..+ .+.++. ...+ .-+...|+.++.....+.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~---~v~g--vD~s~~~~~---~a~~~~---~~~~-~~~~~~d~~~~~~~~~~~~ 121 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP---RVIG--LDVSKSALE---IAAKEN---TAAN-ISYRLLDGLVPEQAAQIHS 121 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS---CEEE--EESCHHHHH---HHHHHS---CCTT-EEEEECCTTCHHHHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC---CEEE--EECCHHHHH---HHHHhC---cccC-ceEEECccccccccccccc
Confidence 46778999999777677777888753 4554 554333331 233322 1113 334455776653211111
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...||.|+.+....-.. .+-...+++.+..+|++||.+.|.-
T Consensus 122 ~~~~d~v~~~~~~~~~~--------------~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 122 EIGDANIYMRTGFHHIP--------------VEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp HHCSCEEEEESSSTTSC--------------GGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred ccCccEEEEcchhhcCC--------------HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 13489999986554321 1123567888889999999976653
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.031 Score=46.25 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=66.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~~~ 95 (214)
..+.+||-||=|.=..+..|++..+ .++ |+.|-.+++.+ .+.++. +..+.. .++..||..+.. .+..
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v--~~id~~~~~~~---~a~~~~---~~~~~~~~~~~~~a~~~~~--~~~~ 126 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPI--DEH--WIIECNDGVFQ---RLRDWA---PRQTHKVIPLKGLWEDVAP--TLPD 126 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCE--EEE--EEEECCHHHHH---HHHHHG---GGCSSEEEEEESCHHHHGG--GSCT
T ss_pred cCCCeEEEECCCccHHHHHHHHhCC--cEE--EEEeCCHHHHH---HHHHHH---hhCCCceEEEeehHHhhcc--cccc
Confidence 5778999999776666666776542 344 45665455442 233332 233432 234456665432 2556
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
..||.|+|+-..... ...+..-...|++.+..+|+|||.+..
T Consensus 127 ~~FD~i~~D~~~~~~-----------~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 127 GHFDGILYDTYPLSE-----------ETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp TCEEEEEECCCCCBG-----------GGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cCCceEEEeeeeccc-----------chhhhcchhhhhhhhhheeCCCCEEEE
Confidence 789999997432221 012445577889999999999998754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.049 Score=48.40 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=79.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEE----ccccccCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLH----GVNVHTMDRHP 91 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~----~VDAt~L~~~~ 91 (214)
.....+||-||=|+=.++..|++. + . -.|+.|..++.. +..++.|..+.. ..|+..+.
T Consensus 105 ~~~~~~VLDiGcG~G~~~~~l~~~-g--~--~v~gvD~s~~~~----------~~a~~~~~~~~~~~~~~~~~~~l~--- 166 (416)
T 4e2x_A 105 TGPDPFIVEIGCNDGIMLRTIQEA-G--V--RHLGFEPSSGVA----------AKAREKGIRVRTDFFEKATADDVR--- 166 (416)
T ss_dssp CSSSCEEEEETCTTTTTHHHHHHT-T--C--EEEEECCCHHHH----------HHHHTTTCCEECSCCSHHHHHHHH---
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-C--C--cEEEECCCHHHH----------HHHHHcCCCcceeeechhhHhhcc---
Confidence 357789999996555566667764 2 2 456777544332 222333444332 22333321
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC-------CC----------
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD-------DH---------- 154 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~-------~~---------- 154 (214)
+..++||.|+.+.--.-. .-...|++.+..+|++||.+.++.-. ..
T Consensus 167 -~~~~~fD~I~~~~vl~h~----------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 229 (416)
T 4e2x_A 167 -RTEGPANVIYAANTLCHI----------------PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFF 229 (416)
T ss_dssp -HHHCCEEEEEEESCGGGC----------------TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCE
T ss_pred -cCCCCEEEEEECChHHhc----------------CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhh
Confidence 235789999998542211 11467888999999999999887421 00
Q ss_pred CCCcccHhhHHHhcCCEEEEEecCC
Q 041136 155 PYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 155 Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
.++.-.+..+++++||.+.+...+.
T Consensus 230 ~~s~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 230 LFSATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp ECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred cCCHHHHHHHHHHcCCEEEEEEEcc
Confidence 0222357889999999998876653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.074 Score=43.98 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=59.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
....+||-||=|.=.++..|++.++ +..++ +.|..++..+ .+.++. .++. +...|+.++. +...
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~--~vD~s~~~~~---~a~~~~-----~~~~-~~~~d~~~~~----~~~~ 147 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALP-EITTF--GLDVSKVAIK---AAAKRY-----PQVT-FCVASSHRLP----FSDT 147 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT-TSEEE--EEESCHHHHH---HHHHHC-----TTSE-EEECCTTSCS----BCTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCC-CCeEE--EEeCCHHHHH---HHHHhC-----CCcE-EEEcchhhCC----CCCC
Confidence 5678999999777666777888763 33554 4554333321 122221 2233 3445776653 4456
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+||.|+.+++. .+++.+..+|++||.+.+...
T Consensus 148 ~fD~v~~~~~~-----------------------~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 148 SMDAIIRIYAP-----------------------CKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp CEEEEEEESCC-----------------------CCHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEeCCh-----------------------hhHHHHHHhcCCCcEEEEEEc
Confidence 89999987651 124667889999999977643
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.063 Score=43.54 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=70.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccc-cCCCCCCCC-
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVH-TMDRHPTLS- 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt-~L~~~~~~~- 94 (214)
.+..+||-||=|.=.++..|++. + ..++ +.|..+...+ .+.++ ..++.+ ...|+. .+ .+.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~--~vD~s~~~~~---~a~~~-----~~~~~~-~~~d~~~~~----~~~~ 108 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ-A--ARWA--AYDFSPELLK---LARAN-----APHADV-YEWNGKGEL----PAGL 108 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG-S--SEEE--EEESCHHHHH---HHHHH-----CTTSEE-EECCSCSSC----CTTC
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-C--CEEE--EEECCHHHHH---HHHHh-----CCCceE-EEcchhhcc----CCcC
Confidence 57789999997766677778876 2 3454 4564333331 23333 123443 445663 22 234
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..+||.|+.+.. ...+++.+..+|+|||.+... +...+.-.+..+..++|+....
T Consensus 109 ~~~fD~v~~~~~----------------------~~~~l~~~~~~LkpgG~l~~~---~~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 109 GAPFGLIVSRRG----------------------PTSVILRLPELAAPDAHFLYV---GPRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp CCCEEEEEEESC----------------------CSGGGGGHHHHEEEEEEEEEE---ESSSCCTHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEeCCC----------------------HHHHHHHHHHHcCCCcEEEEe---CCcCCHHHHHHHHHHCCCeEEE
Confidence 578999999821 112345577899999998722 1223444677888899988765
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
.
T Consensus 164 ~ 164 (226)
T 3m33_A 164 E 164 (226)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=93.99 E-value=0.58 Score=39.08 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=55.3
Q ss_pred EEEcccccc-CCCC-CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec-CC-
Q 041136 78 VLHGVNVHT-MDRH-PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR-DD- 153 (214)
Q Consensus 78 Vl~~VDAt~-L~~~-~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~-~~- 153 (214)
-+...|+++ +.-. ..+...+||.|+.++-.... ..+..-+..+++.+..+|+|||.+.++-. ..
T Consensus 153 ~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~------------~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~ 220 (289)
T 2g72_A 153 RVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV------------SPDLASFQRALDHITTLLRPGGHLLLIGALEES 220 (289)
T ss_dssp EEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH------------CSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC
T ss_pred eEEecccCCCCCccccccCCCCCCEEEehhhhhhh------------cCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc
Confidence 345568876 3211 12445679999999642110 00122356788999999999999877521 10
Q ss_pred -----------CCCCcccHhhHHHhcCCEEEEEecCC
Q 041136 154 -----------HPYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 154 -----------~Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
.+++.-.+..+.+++||.+.....+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 221 WYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp EEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 12344457778889999988765543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.022 Score=51.81 Aligned_cols=120 Identities=17% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcC-ccH-HHHHHHHHhCCCEEEEcccccc-CCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKH-WTS-QAHLQSLWSRGCLVLHGVNVHT-MDRHPTL 93 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY-~~a-~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~ 93 (214)
+.++||++|=|+-+-++.+.++ . ...|++--+|.+- ++.++| |.. ....+..+.-.++|+++ ||.+ |.+. .-
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~-Da~~fl~~~-~~ 280 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE-DCIPVLKRY-AK 280 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES-CHHHHHHHH-HH
T ss_pred CCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH-HHHHHHHhh-hh
Confidence 4589999999999999988875 3 3567666666432 333444 221 11111112223444443 5543 1110 00
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
..++||.||-+-|.......- .. -.....-..||+.++..|+++|.+.
T Consensus 281 ~~~~yDvIIvDl~D~~~s~~p-~g-----~a~~Lft~eFy~~~~~~L~p~GVlv 328 (381)
T 3c6k_A 281 EGREFDYVINDLTAVPISTSP-EE-----DSTWEFLRLILDLSMKVLKQDGKYF 328 (381)
T ss_dssp HTCCEEEEEEECCSSCCCCC----------CHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred ccCceeEEEECCCCCcccCcc-cC-----cchHHHHHHHHHHHHHhcCCCCEEE
Confidence 246799999997754321100 00 0134456899999999999999753
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.75 Score=40.38 Aligned_cols=128 Identities=17% Similarity=0.129 Sum_probs=78.5
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++.+|.+|- +++.+.-. + ..++. +..-|+.+ . +..
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~---~------~~~v~-~~~~d~~~--~---~p~ 261 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYP---SINAINFDL-PHVIQDAP---A------FSGVE-HLGGDMFD--G---VPK 261 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTTCC---C------CTTEE-EEECCTTT--C---CCC
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCC---CCEEEEEeh-HHHHHhhh---h------cCCCE-EEecCCCC--C---CCC
Confidence 67889999999877778888999884 456788887 44442211 1 02333 33445543 1 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe-c-CCC-------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL-R-DDH------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl-~-~~~------------------- 154 (214)
. |.|+..+-..... .+-...+++.+..+|+|||.+.|.= . ...
T Consensus 262 ~--D~v~~~~vlh~~~--------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~ 325 (368)
T 3reo_A 262 G--DAIFIKWICHDWS--------------DEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLA 325 (368)
T ss_dssp C--SEEEEESCGGGBC--------------HHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred C--CEEEEechhhcCC--------------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHh
Confidence 2 9999877644321 1233467788899999999987742 1 111
Q ss_pred ------CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 ------PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 ------Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.++.=++..+.+++||...+..+-
T Consensus 326 ~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 355 (368)
T 3reo_A 326 YNPGGKERTEKEFQALAMASGFRGFKVASC 355 (368)
T ss_dssp HSSBCCCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred hcCCCccCCHHHHHHHHHHCCCeeeEEEEe
Confidence 112223567788889888776543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.1 Score=43.53 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=54.8
Q ss_pred EEccccccCCCCCCCCCCcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC--
Q 041136 79 LHGVNVHTMDRHPTLSQMKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-- 154 (214)
Q Consensus 79 l~~VDAt~L~~~~~~~~~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-- 154 (214)
++-.|+++..........+||.|+.++= |+.. +..-+...++....+|+|||.+.++-....
T Consensus 138 ~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~--------------~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~ 203 (263)
T 2a14_A 138 VLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC--------------SLDAYRAALCNLASLLKPGGHLVTTVTLRLPS 203 (263)
T ss_dssp EEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS--------------SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE
T ss_pred EEeccccCCCCCCccccCCCCEeeehHHHHHhcC--------------CHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc
Confidence 5566777743211123458999999873 2111 122345678888999999999977732111
Q ss_pred -----------CCCcccHhhHHHhcCCEEEEEecCC
Q 041136 155 -----------PYNQWNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 155 -----------Py~~W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+++.-.+.++...+||.+.+...+.
T Consensus 204 ~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 204 YMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp EEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred ceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 1233357788889999988765543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.38 Score=41.78 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=77.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCC--CcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSA--TNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~--~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
...+||=+|=|.=.|+.++++..... .....++.|..++.. .-|..|+.... ..+.+..+ |+... ...
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~---~~a~~n~~~~g-~~~~i~~~-D~l~~-----~~~ 199 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI---SLALVGADLQR-QKMTLLHQ-DGLAN-----LLV 199 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHH---HHHHHHHHHHT-CCCEEEES-CTTSC-----CCC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHH---HHHHHHHHhCC-CCceEEEC-CCCCc-----ccc
Confidence 45688877644444445576665311 124555666544443 24666665432 23444433 44331 224
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHH----HHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC--CCcccHhhHHHhcC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNL----IKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP--YNQWNVMGLADKLG 169 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~----i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P--y~~W~i~~lA~~~g 169 (214)
.+||.||.|.|. |... ..++.... ..-...+-..|++.+..+|+++|.+.+.+.++-- -..-.+.....+.+
T Consensus 200 ~~fD~Ii~NPPf-g~~~-~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~ 277 (344)
T 2f8l_A 200 DPVDVVISDLPV-GYYP-DDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG 277 (344)
T ss_dssp CCEEEEEEECCC-SEES-CHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred CCccEEEECCCC-CCcC-chhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCC
Confidence 679999999993 2110 00000000 0000012346888899999999998777643310 11223444444555
Q ss_pred CEEEEEecCCCCCCCCC
Q 041136 170 LVLKEKVEFLKQDFPGY 186 (214)
Q Consensus 170 l~l~~~~~F~~~~yPgY 186 (214)
+. ...+.+....|++.
T Consensus 278 ~~-~~ii~lp~~~F~~~ 293 (344)
T 2f8l_A 278 HI-EGIIKLPETLFKSE 293 (344)
T ss_dssp EE-EEEEECCGGGSCC-
T ss_pred eE-EEeeeCChhhccCC
Confidence 42 33344555555544
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.1 Score=48.30 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=63.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+.+||-||-|.=.++..|++. + ...|+|+-. .+.+. .+.++++.+.-.+..-+..-|+.++. + ..
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~--s~~l~----~A~~~~~~~gl~~~v~~~~~d~~~~~----~-~~ 223 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEA--STMAQ----HAEVLVKSNNLTDRIVVIPGKVEEVS----L-PE 223 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEEC--HHHHH----HHHHHHHHTTCTTTEEEEESCTTTCC----C-SS
T ss_pred cCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEc--HHHHH----HHHHHHHHcCCCCcEEEEECchhhCc----c-CC
Confidence 46789999996665566667763 2 346666544 33332 36667765532223344455776652 2 24
Q ss_pred cccEEEEcCC-CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFP-HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFP-H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+||.||.|.| +... +..++ ..+..+..+|++||.+.++.
T Consensus 224 ~fD~Ivs~~~~~~~~--------------~e~~~-~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 224 QVDIIISEPMGYMLF--------------NERML-ESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp CEEEEECCCCHHHHT--------------CHHHH-HHHHHGGGGEEEEEEEESCE
T ss_pred CeEEEEEeCchHhcC--------------cHHHH-HHHHHHHHhcCCCCEEEEEe
Confidence 7999999988 3221 11222 34456889999999986543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.81 Score=38.28 Aligned_cols=123 Identities=12% Similarity=0.069 Sum_probs=78.7
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCC-
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQ- 95 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~- 95 (214)
++.+||=||-|.=..+.+||+.. +...++| .|-.+... ..|.+|++.+.-.+ +.+.. -|+-. .+..
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~-~~~~V~a--vDi~~~al---~~A~~N~~~~gl~~~i~~~~-~d~l~-----~l~~~ 82 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERG-QIKSAIA--GEVVEGPY---QSAVKNVEAHGLKEKIQVRL-ANGLA-----AFEET 82 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTT-SEEEEEE--EESSHHHH---HHHHHHHHHTTCTTTEEEEE-CSGGG-----GCCGG
T ss_pred CCCEEEEeCCCcHHHHHHHHHhC-CCCEEEE--EECCHHHH---HHHHHHHHHcCCCceEEEEE-Cchhh-----hcccC
Confidence 56799999988888888888863 2234544 55434333 25788887765433 33333 34421 1222
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..||.|+.. |. --+++..++..+...|+++|.+.+.-.. ..-.+.....++||.+.+
T Consensus 83 ~~~D~Ivia----G~--------------Gg~~i~~Il~~~~~~L~~~~~lVlq~~~----~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 83 DQVSVITIA----GM--------------GGRLIARILEEGLGKLANVERLILQPNN----REDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp GCCCEEEEE----EE--------------CHHHHHHHHHHTGGGCTTCCEEEEEESS----CHHHHHHHHHHTTEEEEE
T ss_pred cCCCEEEEc----CC--------------ChHHHHHHHHHHHHHhCCCCEEEEECCC----CHHHHHHHHHHCCCEEEE
Confidence 269998862 22 1357889999999999999887776443 334566677788887765
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.76 Score=38.65 Aligned_cols=125 Identities=12% Similarity=0.012 Sum_probs=79.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.++.+||=||-|.=-.+.+|++.. +...++|+=.+ +... ..|.+|++.+.-.+ +.+..+ |+-+.- ...
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~AvDi~--~~al---~~A~~N~~~~gl~~~I~~~~g-D~l~~~----~~~ 88 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMG-YCDFAIAGEVV--NGPY---QSALKNVSEHGLTSKIDVRLA-NGLSAF----EEA 88 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTT-CEEEEEEEESS--HHHH---HHHHHHHHHTTCTTTEEEEEC-SGGGGC----CGG
T ss_pred CCCCEEEEECCchHHHHHHHHHhC-CCCEEEEEECC--HHHH---HHHHHHHHHcCCCCcEEEEEC-chhhcc----ccc
Confidence 356799999988777777788763 33345554444 3333 25888887765433 444444 444321 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
..||.|+. .|- --+++..++..+...|+++|.+.+.-. ...-.+.....++||.+.+
T Consensus 89 ~~~D~Ivi----aGm--------------Gg~lI~~IL~~~~~~l~~~~~lIlqp~----~~~~~lr~~L~~~Gf~i~~ 145 (230)
T 3lec_A 89 DNIDTITI----CGM--------------GGRLIADILNNDIDKLQHVKTLVLQPN----NREDDLRKWLAANDFEIVA 145 (230)
T ss_dssp GCCCEEEE----EEE--------------CHHHHHHHHHHTGGGGTTCCEEEEEES----SCHHHHHHHHHHTTEEEEE
T ss_pred cccCEEEE----eCC--------------chHHHHHHHHHHHHHhCcCCEEEEECC----CChHHHHHHHHHCCCEEEE
Confidence 36999885 232 135888999999999999998777632 2344566777888988765
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=2.1 Score=37.48 Aligned_cols=128 Identities=14% Similarity=0.139 Sum_probs=77.7
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++.+|.+|- .++.+. +.. ....-+..-|+.+ . +..
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~---a~~-------~~~v~~~~~D~~~--~---~p~ 259 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYP---TIKGVNFDL-PHVISE---APQ-------FPGVTHVGGDMFK--E---VPS 259 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC-------CTTEEEEECCTTT--C---CCC
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCC---CCeEEEecC-HHHHHh---hhh-------cCCeEEEeCCcCC--C---CCC
Confidence 77889999999777778888999884 456788888 444322 111 1223333445554 1 112
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE-e-cCCC-------------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT-L-RDDH------------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT-l-~~~~------------------- 154 (214)
. |.|+..+--.... .+-...+++.+...|+|||.+.|. . ....
T Consensus 260 ~--D~v~~~~vlh~~~--------------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~ 323 (364)
T 3p9c_A 260 G--DTILMKWILHDWS--------------DQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA 323 (364)
T ss_dssp C--SEEEEESCGGGSC--------------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHH
T ss_pred C--CEEEehHHhccCC--------------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHh
Confidence 2 9998765433221 123456678889999999998764 1 1111
Q ss_pred ------CCCcccHhhHHHhcCCEEEEEecC
Q 041136 155 ------PYNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 155 ------Py~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.++.=++..+.+++||...+..+.
T Consensus 324 ~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~ 353 (364)
T 3p9c_A 324 HNPGGRERYEREFQALARGAGFTGVKSTYI 353 (364)
T ss_dssp HCSSCCCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred cccCCccCCHHHHHHHHHHCCCceEEEEEc
Confidence 111222567788889888776543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.76 Score=39.01 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.++.+||=||-|.=-.+.+||+.. +...++| .|-.+... ..|.+|++.+.-.+ +.+.. -|+-.. +..
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~-~~~~V~a--vDi~~~al---~~A~~N~~~~gl~~~I~v~~-gD~l~~-----~~~ 87 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQ-TASFAIA--GEVVDGPF---QSAQKQVRSSGLTEQIDVRK-GNGLAV-----IEK 87 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTT-SEEEEEE--EESSHHHH---HHHHHHHHHTTCTTTEEEEE-CSGGGG-----CCG
T ss_pred CCCCEEEEECCccHHHHHHHHHhC-CCCEEEE--EECCHHHH---HHHHHHHHHcCCCceEEEEe-cchhhc-----cCc
Confidence 356799999987777777788763 2234554 45433333 25788887765333 33333 344332 222
Q ss_pred -CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 96 -MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 96 -~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
.+||.||. .|. --+++..++..+...|+++|.+.+.-.. ..-.+.....++||.+.+
T Consensus 88 ~~~~D~Ivi----agm--------------Gg~lI~~IL~~~~~~L~~~~~lIlq~~~----~~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 88 KDAIDTIVI----AGM--------------GGTLIRTILEEGAAKLAGVTKLILQPNI----AAWQLREWSEQNNWLITS 145 (244)
T ss_dssp GGCCCEEEE----EEE--------------CHHHHHHHHHHTGGGGTTCCEEEEEESS----CHHHHHHHHHHHTEEEEE
T ss_pred cccccEEEE----eCC--------------chHHHHHHHHHHHHHhCCCCEEEEEcCC----ChHHHHHHHHHCCCEEEE
Confidence 35999886 332 1358899999999999998888777433 334566677778887644
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=93.31 E-value=0.25 Score=39.60 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++.+||-||=|.=.++..|++.. ..+++ .|..++..+ .+.+++..+. ++. +...|+.+.. ..
T Consensus 67 ~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~--vD~~~~~~~---~a~~~~~~~~--~v~-~~~~d~~~~~----~~ 131 (231)
T 1vbf_A 67 DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVS--VEINEKMYN---YASKLLSYYN--NIK-LILGDGTLGY----EE 131 (231)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEE--EESCHHHHH---HHHHHHTTCS--SEE-EEESCGGGCC----GG
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEE--EeCCHHHHH---HHHHHHhhcC--CeE-EEECCccccc----cc
Confidence 45678899999977766777788764 35555 454343331 2444443221 333 3445666511 13
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
..+||.|+.+.+-.... ..+..+|++||.+.++....
T Consensus 132 ~~~fD~v~~~~~~~~~~----------------------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 132 EKPYDRVVVWATAPTLL----------------------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp GCCEEEEEESSBBSSCC----------------------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCccEEEECCcHHHHH----------------------HHHHHHcCCCcEEEEEEcCC
Confidence 46799999997653321 13667899999998886543
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.61 Score=40.48 Aligned_cols=127 Identities=13% Similarity=0.190 Sum_probs=78.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++.+|.+|. ..+.+. +.+ + .++.+. ..|+.+ . +.
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~---a~~----~--~~v~~~-~~d~~~-~----~~- 250 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFP---HLKCTVFDQ-PQVVGN---LTG----N--ENLNFV-GGDMFK-S----IP- 250 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCT---TSEEEEEEC-HHHHSS---CCC----C--SSEEEE-ECCTTT-C----CC-
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCC---CCeEEEecc-HHHHhh---ccc----C--CCcEEE-eCccCC-C----CC-
Confidence 45678999999777777888999874 456788887 444421 111 1 233333 335554 1 22
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCC---CCEEEEEe-c-CCC----------------
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGE---GGEVHVTL-R-DDH---------------- 154 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~---~G~i~VTl-~-~~~---------------- 154 (214)
.||.|+.+..-.-.. ..-...+++.+..+|++ ||.+.|.- . ...
T Consensus 251 -~~D~v~~~~vlh~~~--------------d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~ 315 (358)
T 1zg3_A 251 -SADAVLLKWVLHDWN--------------DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLV 315 (358)
T ss_dssp -CCSEEEEESCGGGSC--------------HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHH
T ss_pred -CceEEEEcccccCCC--------------HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHH
Confidence 399999987744321 11234667788899999 99987742 1 111
Q ss_pred --------CCCcccHhhHHHhcCCEEEEEec
Q 041136 155 --------PYNQWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 155 --------Py~~W~i~~lA~~~gl~l~~~~~ 177 (214)
.++.=++.++.+++||...+..+
T Consensus 316 ~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 316 MLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred HhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 11222355677788998877654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.16 Score=42.74 Aligned_cols=133 Identities=13% Similarity=0.041 Sum_probs=73.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHH---------HHH-------hCCCEEEE
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQ---------SLW-------SRGCLVLH 80 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~---------~L~-------~~g~~Vl~ 80 (214)
....+||-||=|+=-.+..||+. | . -+|+.|-.++..+ .|.+... ... ...-.-+.
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~-G--~--~V~gvD~S~~~i~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 138 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR-G--H--TVVGVEISEIGIR---EFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLY 138 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT-T--C--EEEEECSCHHHHH---HHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC-C--C--eEEEEECCHHHHH---HHHHhcccccccccccccccccccccCCCceEEE
Confidence 36789999995555555668875 3 2 4677885444432 1221111 000 01122344
Q ss_pred ccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEec------CC
Q 041136 81 GVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLR------DD 153 (214)
Q Consensus 81 ~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~------~~ 153 (214)
.-|+.++.. -...+||.|+.+.-..... ......+++.+..+|+|||.+ .+|+. .+
T Consensus 139 ~~D~~~l~~---~~~~~FD~V~~~~~l~~l~--------------~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g 201 (252)
T 2gb4_A 139 CCSIFDLPR---ANIGKFDRIWDRGALVAIN--------------PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAG 201 (252)
T ss_dssp ESCTTTGGG---GCCCCEEEEEESSSTTTSC--------------GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCC
T ss_pred ECccccCCc---ccCCCEEEEEEhhhhhhCC--------------HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCC
Confidence 557777642 1126899999765433221 123456788899999999998 46765 23
Q ss_pred CCCCccc---HhhHHHhcCCEEEEEe
Q 041136 154 HPYNQWN---VMGLADKLGLVLKEKV 176 (214)
Q Consensus 154 ~Py~~W~---i~~lA~~~gl~l~~~~ 176 (214)
.|+. +. +..+... ++.+....
T Consensus 202 ~~~~-~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 202 PPFY-VPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp SSCC-CCHHHHHHHHTT-TEEEEEEE
T ss_pred CCCC-CCHHHHHHHhhC-CeEEEEEe
Confidence 3432 33 3333333 47776644
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=92.93 E-value=0.32 Score=44.70 Aligned_cols=109 Identities=9% Similarity=-0.014 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccH-------HHHHHHHH--hCCCEEEEccccc
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTS-------QAHLQSLW--SRGCLVLHGVNVH 85 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a-------~~ni~~L~--~~g~~Vl~~VDAt 85 (214)
....+++||-||=|.=++++.||+..+. . .+++.|-.+++.+ .| ..|++.+. -.++.++.+-|..
T Consensus 239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~-~--~V~GVDis~~~l~---~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~ 312 (433)
T 1u2z_A 239 QLKKGDTFMDLGSGVGNCVVQAALECGC-A--LSFGCEIMDDASD---LTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 312 (433)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCC-S--EEEEEECCHHHHH---HHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHCCC-C--EEEEEeCCHHHHH---HHHHhHHHHHHHHHHcCCCCCceEEEEcCccc
Confidence 3467899999997766667778887752 2 4556664444331 23 44544432 1234444432221
Q ss_pred cCCCCCCC--CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 86 TMDRHPTL--SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 86 ~L~~~~~~--~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.. . .+ ....||+|+.|....+. + +...++.+..+|++||.|.++
T Consensus 313 ~~--~-~~~~~~~~FDvIvvn~~l~~~---------d--------~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 313 DN--N-RVAELIPQCDVILVNNFLFDE---------D--------LNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TC--H-HHHHHGGGCSEEEECCTTCCH---------H--------HHHHHHHHHTTCCTTCEEEES
T ss_pred cc--c-ccccccCCCCEEEEeCccccc---------c--------HHHHHHHHHHhCCCCeEEEEe
Confidence 10 0 01 13579999998544221 1 113345667889999999876
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.33 Score=43.74 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=64.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+++||-||-|-=-.|+-.|+ .| +..|+|.-... +. ..|.++++...-.+...+..-|++++.- .++
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~-aG-A~~V~ave~s~---~~---~~a~~~~~~n~~~~~i~~i~~~~~~~~l-----pe~ 149 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQ-AG-ARRVYAVEASA---IW---QQAREVVRFNGLEDRVHVLPGPVETVEL-----PEQ 149 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHH-TT-CSEEEEEECST---TH---HHHHHHHHHTTCTTTEEEEESCTTTCCC-----SSC
T ss_pred CCCEEEEeCCCccHHHHHHHH-hC-CCEEEEEeChH---HH---HHHHHHHHHcCCCceEEEEeeeeeeecC-----Ccc
Confidence 467899999665333332343 33 45787765432 22 1366676665544445555567877642 367
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV 146 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i 146 (214)
||.||.+.-..+. .+..+|..++.....+|+|+|.+
T Consensus 150 ~DvivsE~~~~~l-------------~~e~~l~~~l~a~~r~Lkp~G~~ 185 (376)
T 4hc4_A 150 VDAIVSEWMGYGL-------------LHESMLSSVLHARTKWLKEGGLL 185 (376)
T ss_dssp EEEEECCCCBTTB-------------TTTCSHHHHHHHHHHHEEEEEEE
T ss_pred ccEEEeecccccc-------------cccchhhhHHHHHHhhCCCCceE
Confidence 9999987554432 13346788888888999998874
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.27 Score=42.11 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=60.8
Q ss_pred CCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCC--CCCcccHHHHHHhH---HHHHHHHHHHHhccCCCCEEEEE
Q 041136 75 GCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSP--PLSEQDTNLIKRHK---NLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 75 g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~--~~~~~~~~~i~~n~---~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
+-..++.-|+.++-+ .+..++||.||.|.|-..... ...++..+ +..+. ..+...++.|..+|+++|.+.|.
T Consensus 20 ~~~~i~~gD~~~~l~--~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~-~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 20 GVHRLHVGDAREVLA--SFPEASVHLVVTSPPYWTLKRYEDTPGQLGH-IEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp -CEEEEESCHHHHHT--TSCTTCEEEEEECCCCCCCC-------CCHH-HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHh--hCCCCceeEEEECCCCCCccccCCChhhhcc-cccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 444566678887322 245678999999999864321 01111111 12222 23567889999999999999888
Q ss_pred ecCCC----CCCc-------ccHhhHHHhcCCEEEEEecCC
Q 041136 150 LRDDH----PYNQ-------WNVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 150 l~~~~----Py~~-------W~i~~lA~~~gl~l~~~~~F~ 179 (214)
+-+.+ .+.. -.+..+..+.|+.+.......
T Consensus 97 ~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW~ 137 (297)
T 2zig_A 97 VGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPIIWH 137 (297)
T ss_dssp ECCEEEECC----EEEECHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ECCCccccccCCcccccccHHHHHHHHHHcCCeeeccEEEe
Confidence 65432 1111 146667788999887755443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.14 Score=50.99 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCC--CCcEEEeecCChHHHHhcCccH--HHHHHHH-HhCCC--EEEEccccccCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGS--ATNMVASSLDSERTLKTKHWTS--QAHLQSL-WSRGC--LVLHGVNVHTMDR 89 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~--~~~l~ATs~ds~~~l~~kY~~a--~~ni~~L-~~~g~--~Vl~~VDAt~L~~ 89 (214)
..+.+||=.|=|.=+|..++++.++. ..+|++.-+|...-- -| ..|+... -..|. ..+.+-|...+.
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~-----LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~- 393 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLE-----LLSIRLGLLFPQLVSSNNAPTITGEDVCSLN- 393 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHH-----HHHHHHHTTSTTTCBTTBCCEEECCCGGGCC-
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHH-----HHHHHHHHHHhhhhcCCCcceEEecchhccc-
Confidence 45778886654444555557776641 245665555543211 12 2222210 00122 123343443321
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHh--------------HHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRH--------------KNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n--------------~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.....+||.||.|.|-.+... ......+..... ..+...|++.|..+|+++|.+.+-+
T Consensus 394 --~~~~~kFDVVIgNPPYg~~~~-~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIl 465 (878)
T 3s1s_A 394 --PEDFANVSVVVMNPPYVSGVT-DPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIM 465 (878)
T ss_dssp --GGGGTTEEEEEECCBCCSSCC-CHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred --ccccCCCCEEEECCCcccccc-chhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEE
Confidence 123467999999999976432 111100100000 1256679999999999999985553
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=1.9 Score=37.27 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=62.8
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
++...+||-||=|.=.++..|++.+. ++..|++|. +.+.+. +.+ + .++. +..-|+.+ . +.
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~---a~~----~--~~v~-~~~~d~~~--~---~p- 245 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFP---KLKCIVFDR-PQVVEN---LSG----S--NNLT-YVGGDMFT--S---IP- 245 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEEC-HHHHTT---CCC----B--TTEE-EEECCTTT--C---CC-
T ss_pred cccCceEEEeCCCccHHHHHHHHHCC---CCeEEEeeC-HHHHhh---ccc----C--CCcE-EEeccccC--C---CC-
Confidence 56678999999777777888998874 345778888 555432 111 1 2333 33445543 1 21
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCC---CCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGE---GGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~---~G~i~VT 149 (214)
.||.|+.+.--.-.. ..-...+++.+..+|+| ||.+.|.
T Consensus 246 -~~D~v~~~~~lh~~~--------------d~~~~~~l~~~~~~L~p~~~gG~l~i~ 287 (352)
T 1fp2_A 246 -NADAVLLKYILHNWT--------------DKDCLRILKKCKEAVTNDGKRGKVTII 287 (352)
T ss_dssp -CCSEEEEESCGGGSC--------------HHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred -CccEEEeehhhccCC--------------HHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 299999987643221 11234677888899999 9998766
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.39 Score=41.24 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=45.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
....+++||-||=|.=.++..|++. +..++| .|..+.+. ..+.+|++.....++. +..-|+.++. +
T Consensus 39 ~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~--vDi~~~~~---~~a~~~~~~~~~~~v~-~~~~D~~~~~----~- 104 (299)
T 2h1r_A 39 KIKSSDIVLEIGCGTGNLTVKLLPL---AKKVIT--IDIDSRMI---SEVKKRCLYEGYNNLE-VYEGDAIKTV----F- 104 (299)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHTTT---SSEEEE--ECSCHHHH---HHHHHHHHHTTCCCEE-C----CCSSC----C-
T ss_pred CCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEE--EECCHHHH---HHHHHHHHHcCCCceE-EEECchhhCC----c-
Confidence 3467889999995555555557764 235555 55434443 2355565533212333 3445777653 2
Q ss_pred CCcccEEEEcCCCCC
Q 041136 95 QMKFDVIIFNFPHAG 109 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G 109 (214)
..||.||.|.|...
T Consensus 105 -~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 105 -PKFDVCTANIPYKI 118 (299)
T ss_dssp -CCCSEEEEECCGGG
T ss_pred -ccCCEEEEcCCccc
Confidence 36999999999865
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.54 Score=39.93 Aligned_cols=145 Identities=14% Similarity=0.164 Sum_probs=77.9
Q ss_pred CCCeEEEEecCc-hhHHHHHHHH--h---CCCC---cEEEeecCC----hHHH---HhcCccHHHHHHHHHhC-------
Q 041136 18 NNQRILLVGEGD-FSFSDCLARA--F---GSAT---NMVASSLDS----ERTL---KTKHWTSQAHLQSLWSR------- 74 (214)
Q Consensus 18 ~~~~ILlVGeGn-FSFS~sLa~~--~---~~~~---~l~ATs~ds----~~~l---~~kY~~a~~ni~~L~~~------- 74 (214)
+..+||.+|=|- ++|...+... . .+.. .+--+|+|. .+++ .+.||....-.+.|-+.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 457899999775 8887655422 1 3321 344555543 2333 33455533333333211
Q ss_pred --------C-C-EEEEcccccc-CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHH-HHHHHHHHHhccCC
Q 041136 75 --------G-C-LVLHGVNVHT-MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNL-LEAFLKNGREMLGE 142 (214)
Q Consensus 75 --------g-~-~Vl~~VDAt~-L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~L-L~~Ff~Sa~~lL~~ 142 (214)
| + .-++--||.+ |...+......||.|+.+--... .|.+| -..||.....+|++
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~--------------~~p~lw~~~~l~~l~~~L~p 205 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPA--------------KNPDMWTQNLFNAMARLARP 205 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTT--------------TCGGGCCHHHHHHHHHHEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcc--------------cChhhcCHHHHHHHHHHcCC
Confidence 1 1 1234457766 33321111237999999721111 12333 34688889999999
Q ss_pred CCEEEEEecCCCCCCcc-cHhhHHHhcCCEEEEEecCCCCCCCCCccccC
Q 041136 143 GGEVHVTLRDDHPYNQW-NVMGLADKLGLVLKEKVEFLKQDFPGYHNKRG 191 (214)
Q Consensus 143 ~G~i~VTl~~~~Py~~W-~i~~lA~~~gl~l~~~~~F~~~~yPgY~~~rt 191 (214)
||.+. | |+.= .+......+|+.+.+ -||+..||+
T Consensus 206 GG~l~-t------ysaa~~vrr~L~~aGF~v~~--------~~g~~~kr~ 240 (257)
T 2qy6_A 206 GGTLA-T------FTSAGFVRRGLQEAGFTMQK--------RKGFGRKRE 240 (257)
T ss_dssp EEEEE-E------SCCBHHHHHHHHHHTEEEEE--------ECCSTTCCC
T ss_pred CcEEE-E------EeCCHHHHHHHHHCCCEEEe--------CCCCCCCCc
Confidence 99865 4 2221 244555668999877 477776665
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.57 Score=39.85 Aligned_cols=81 Identities=23% Similarity=0.184 Sum_probs=47.6
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+...+++||-||=|.=.++..|++.. ..++|.-+| +.+.+ .+.++++.........+..-|+.++. +
T Consensus 25 ~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~--~~~~~---~a~~~~~~~~~~~~v~~~~~D~~~~~----~- 91 (285)
T 1zq9_A 25 ALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELD--PRLVA---ELHKRVQGTPVASKLQVLVGDVLKTD----L- 91 (285)
T ss_dssp CCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESC--HHHHH---HHHHHHTTSTTGGGEEEEESCTTTSC----C-
T ss_pred CCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECC--HHHHH---HHHHHHHhcCCCCceEEEEcceeccc----c-
Confidence 34678899999966555666688763 356655444 33331 24444432211012334455887763 2
Q ss_pred CCcccEEEEcCCCCC
Q 041136 95 QMKFDVIIFNFPHAG 109 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G 109 (214)
..||.|+.|.|...
T Consensus 92 -~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 92 -PFFDTCVANLPYQI 105 (285)
T ss_dssp -CCCSEEEEECCGGG
T ss_pred -hhhcEEEEecCccc
Confidence 26999999999865
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=1.3 Score=38.30 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-..+++||.||=|.=.++..|++. +..|+|.-+|.. +. +.+.++++ ...++.+ ..-|+.++. +.
T Consensus 47 ~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~--li---~~a~~~~~--~~~~v~v-i~gD~l~~~----~~ 111 (295)
T 3gru_A 47 NLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKS--LE---PYANKLKE--LYNNIEI-IWGDALKVD----LN 111 (295)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGG--GH---HHHHHHHH--HCSSEEE-EESCTTTSC----GG
T ss_pred CCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHH--HH---HHHHHHhc--cCCCeEE-EECchhhCC----cc
Confidence 3457889999996666666668876 246777666653 22 13445554 1224444 445887764 34
Q ss_pred CCcccEEEEcCCC
Q 041136 95 QMKFDVIIFNFPH 107 (214)
Q Consensus 95 ~~~FD~IiFNFPH 107 (214)
...||.||.|.|-
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 4579999999996
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=88.92 E-value=0.35 Score=39.07 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=50.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+.+||-+|=|.=.++..|++.. ..+ |+.|..++..+ .+..|++.+.-..-..+..-|+.++. ...+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~---~~v--~~vD~s~~~~~---~a~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~ 144 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG---MRV--IAIDIDPVKIA---LARNNAEVYGIADKIEFICGDFLLLA-----SFLK 144 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT---CEE--EEEESCHHHHH---HHHHHHHHTTCGGGEEEEESCHHHHG-----GGCC
T ss_pred CCCEEEECccccCHHHHHHHHcC---CEE--EEEECCHHHHH---HHHHHHHHcCCCcCeEEEECChHHhc-----ccCC
Confidence 67899999966656666677752 344 45664444432 36666655431112445556887764 2468
Q ss_pred ccEEEEcCCCCCC
Q 041136 98 FDVIIFNFPHAGH 110 (214)
Q Consensus 98 FD~IiFNFPH~G~ 110 (214)
||.|+.|.|..+.
T Consensus 145 ~D~v~~~~~~~~~ 157 (241)
T 3gdh_A 145 ADVVFLSPPWGGP 157 (241)
T ss_dssp CSEEEECCCCSSG
T ss_pred CCEEEECCCcCCc
Confidence 9999999998764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=88.61 E-value=4.9 Score=35.89 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=37.0
Q ss_pred EEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCC
Q 041136 46 MVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHA 108 (214)
Q Consensus 46 l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~ 108 (214)
...+++|......+ .|..|++...-.+...+..-|+.++.. ...||.||.|.|--
T Consensus 257 ~~v~GvDid~~al~---~Ar~Na~~~gl~~~I~~~~~D~~~l~~-----~~~fD~Iv~NPPYG 311 (384)
T 3ldg_A 257 LDISGFDFDGRMVE---IARKNAREVGLEDVVKLKQMRLQDFKT-----NKINGVLISNPPYG 311 (384)
T ss_dssp CCEEEEESCHHHHH---HHHHHHHHTTCTTTEEEEECCGGGCCC-----CCCSCEEEECCCCT
T ss_pred ceEEEEECCHHHHH---HHHHHHHHcCCCCceEEEECChHHCCc-----cCCcCEEEECCchh
Confidence 34566675554442 577888766433446677789988753 24799999999963
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=1 Score=41.30 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=59.2
Q ss_pred CCCeEEEEecC-------chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC
Q 041136 18 NNQRILLVGEG-------DFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 18 ~~~~ILlVGeG-------nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~ 90 (214)
...+||-||=| .. .|+.+++.+.+...|++.=++.. .. ....++. +..-|+.++.-.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG-~Sl~la~~~fP~a~V~GVDiSp~--m~------------~~~~rI~-fv~GDa~dlpf~ 279 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGG-GSLRMWKSFFPRGQIYGLDIMDK--SH------------VDELRIR-TIQGDQNDAEFL 279 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCC-HHHHHHHHHCTTCEEEEEESSCC--GG------------GCBTTEE-EEECCTTCHHHH
T ss_pred CCCEEEEEecCCCcCCCCCH-HHHHHHHHhCCCCEEEEEECCHH--Hh------------hcCCCcE-EEEecccccchh
Confidence 46899999988 22 35557776644456665544433 11 1122343 445677775310
Q ss_pred CCCC--CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 PTLS--QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 ~~~~--~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+. ..+||.|+.+-=|. . .-...+|+.+..+|++||.+.|.
T Consensus 280 ~~l~~~d~sFDlVisdgsH~-------------~----~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 280 DRIARRYGPFDIVIDDGSHI-------------N----AHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHHHHHCCEEEEEECSCCC-------------H----HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhhhcccCCccEEEECCccc-------------c----hhHHHHHHHHHHhcCCCeEEEEE
Confidence 0010 46899999874331 0 11346788999999999998875
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=88.57 E-value=1.2 Score=37.42 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=57.3
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-||=|.=-++..|++.. .+|+| .|..+++.+ ..++..-..+..-|+.++. +...+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~---~~v~g--vD~s~~ml~----------~a~~~~~v~~~~~~~e~~~----~~~~s 99 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF---ERVHA--VDPGEAQIR----------QALRHPRVTYAVAPAEDTG----LPPAS 99 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC---SEEEE--EESCHHHHH----------TCCCCTTEEEEECCTTCCC----CCSSC
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC---CEEEE--EeCcHHhhh----------hhhhcCCceeehhhhhhhc----ccCCc
Confidence 45789999944444555577653 36655 564333322 1112222334445776653 56789
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
||.|+.+.-..-. + ...|++.+..+|+|||.+.+.
T Consensus 100 fD~v~~~~~~h~~--------------~---~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 100 VDVAIAAQAMHWF--------------D---LDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp EEEEEECSCCTTC--------------C---HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEeeehhHh--------------h---HHHHHHHHHHHcCCCCEEEEE
Confidence 9999986432111 1 135788899999999998554
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=88.56 E-value=4 Score=36.30 Aligned_cols=84 Identities=11% Similarity=0.096 Sum_probs=48.2
Q ss_pred EEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHh
Q 041136 46 MVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRH 125 (214)
Q Consensus 46 l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n 125 (214)
...+++|......+ .|..|++...-.+..-+..-|+.++.. ...||.||.|.|- |.. + ..
T Consensus 258 ~~V~GvDid~~ai~---~Ar~Na~~~gl~~~i~~~~~D~~~l~~-----~~~~D~Iv~NPPy-g~r----------l-~~ 317 (385)
T 3ldu_A 258 FKIYGYDIDEESID---IARENAEIAGVDEYIEFNVGDATQFKS-----EDEFGFIITNPPY-GER----------L-ED 317 (385)
T ss_dssp CCEEEEESCHHHHH---HHHHHHHHHTCGGGEEEEECCGGGCCC-----SCBSCEEEECCCC-CCS----------H-HH
T ss_pred ceEEEEECCHHHHH---HHHHHHHHcCCCCceEEEECChhhcCc-----CCCCcEEEECCCC-cCc----------c-CC
Confidence 34556675554442 477787765322235566678887653 3479999999995 321 1 12
Q ss_pred HHHHHHHHHHHHhccCC--CCEEEEE
Q 041136 126 KNLLEAFLKNGREMLGE--GGEVHVT 149 (214)
Q Consensus 126 ~~LL~~Ff~Sa~~lL~~--~G~i~VT 149 (214)
.+-+..+++.-..+|++ +|.+.|.
T Consensus 318 ~~~l~~ly~~lg~~lk~~~g~~~~ii 343 (385)
T 3ldu_A 318 KDSVKQLYKELGYAFRKLKNWSYYLI 343 (385)
T ss_dssp HHHHHHHHHHHHHHHHTSBSCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 23344445444444444 7887554
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=0.78 Score=39.68 Aligned_cols=110 Identities=12% Similarity=0.128 Sum_probs=63.5
Q ss_pred CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeec---CChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 15 HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSL---DSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 15 ~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~---ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
..+++.+||=|| -|.+|.. |++. + .|++.=. .+...+. . .. ++.+...++.++.++|++.+.
T Consensus 79 ~~~~g~~VLDlGcG~G~~s~~--la~~-~---~V~gvD~~~~~~~~~~~--~-~~---~~~~~~~~v~~~~~~D~~~l~- 145 (305)
T 2p41_A 79 LVTPEGKVVDLGCGRGGWSYY--CGGL-K---NVREVKGLTKGGPGHEE--P-IP---MSTYGWNLVRLQSGVDVFFIP- 145 (305)
T ss_dssp SSCCCEEEEEETCTTSHHHHH--HHTS-T---TEEEEEEECCCSTTSCC--C-CC---CCSTTGGGEEEECSCCTTTSC-
T ss_pred CCCCCCEEEEEcCCCCHHHHH--HHhc-C---CEEEEeccccCchhHHH--H-HH---hhhcCCCCeEEEeccccccCC-
Confidence 356788999997 6666554 7765 2 5666322 1121110 0 00 011111246677677888764
Q ss_pred CCCCCCCcccEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 90 HPTLSQMKFDVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
..+||.|+.|.+.. |.. ...+...+ ..+..+..+|+|||.+.+....+
T Consensus 146 -----~~~fD~V~sd~~~~~g~~----------~~d~~~~l-~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 146 -----PERCDTLLCDIGESSPNP----------TVEAGRTL-RVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp -----CCCCSEEEECCCCCCSSH----------HHHHHHHH-HHHHHHHHHCCTTCEEEEEESCC
T ss_pred -----cCCCCEEEECCccccCcc----------hhhHHHHH-HHHHHHHHHhCCCCEEEEEeCCC
Confidence 24799999998643 321 11122223 57788889999999887765544
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.51 E-value=3.6 Score=33.78 Aligned_cols=99 Identities=15% Similarity=0.122 Sum_probs=54.6
Q ss_pred CCCCeEEEEecCchhHHHH-HHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh--CCCEEEEccccccC------
Q 041136 17 TNNQRILLVGEGDFSFSDC-LARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS--RGCLVLHGVNVHTM------ 87 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~s-La~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~--~g~~Vl~~VDAt~L------ 87 (214)
...++||.+|-| +|.. +|+ .. +..| ||.|+.++..+ .+.+|++..-- ..-..++-.||...
T Consensus 29 ~~a~~VLEiGtG---ySTl~lA~-~~-~g~V--vtvE~d~~~~~---~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p 98 (202)
T 3cvo_A 29 EEAEVILEYGSG---GSTVVAAE-LP-GKHV--TSVESDRAWAR---MMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHP 98 (202)
T ss_dssp HHCSEEEEESCS---HHHHHHHT-ST-TCEE--EEEESCHHHHH---HHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCB
T ss_pred hCCCEEEEECch---HHHHHHHH-cC-CCEE--EEEeCCHHHHH---HHHHHHHHcCCCCCCceEEEEeCchhhhccccc
Confidence 357899999998 3433 344 31 2344 45555555542 35666654321 11133555676543
Q ss_pred ---------CCCC----CC-CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE
Q 041136 88 ---------DRHP----TL-SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV 146 (214)
Q Consensus 88 ---------~~~~----~~-~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i 146 (214)
.++. .+ ....||.|+-+ |.+ + ..++..+..+|++||.|
T Consensus 99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfID----g~k-----------~------~~~~~~~l~~l~~GG~I 150 (202)
T 3cvo_A 99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVD----GRF-----------R------VGCALATAFSITRPVTL 150 (202)
T ss_dssp SSSTTGGGTTHHHHGGGGCTTCCCCSEEEEC----SSS-----------H------HHHHHHHHHHCSSCEEE
T ss_pred ccchhhhhHHHHhhhhhccccCCCCCEEEEe----CCC-----------c------hhHHHHHHHhcCCCeEE
Confidence 1110 01 23679999877 332 1 14555577899999988
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=86.33 E-value=2.6 Score=35.56 Aligned_cols=116 Identities=15% Similarity=0.103 Sum_probs=64.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CCEEEE-ccccccCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GCLVLH-GVNVHTMDRHP 91 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~Vl~-~VDAt~L~~~~ 91 (214)
...++++||=||=|.=.|+..|++. ..|+|.=+... +....... + ..+.. ++.++. ..|++.|.
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~m--~~~a~~~~---~-~~~~~~~~v~~~~~~~D~~~l~--- 137 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYTL--GVGGHEVP---R-ITESYGWNIVKFKSRVDIHTLP--- 137 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEECC--CCSSCCCC---C-CCCBTTGGGEEEECSCCTTTSC---
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECchh--hhhhhhhh---h-hhhccCCCeEEEecccCHhHCC---
Confidence 3467889999994444445557765 25776544431 11100000 0 00111 344432 56888764
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC--EEEEEecCCCCCCc
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG--EVHVTLRDDHPYNQ 158 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G--~i~VTl~~~~Py~~ 158 (214)
..+||.|+.++.|+... . .+ .+...+. .+..+..+|+||| .+.+.... |+..
T Consensus 138 ---~~~fD~V~sd~~~~~~~---~-----~~-d~~~~l~-~L~~~~r~LkpGG~~~fv~kv~~--~~~~ 191 (265)
T 2oxt_A 138 ---VERTDVIMCDVGESSPK---W-----SV-ESERTIK-ILELLEKWKVKNPSADFVVKVLC--PYSV 191 (265)
T ss_dssp ---CCCCSEEEECCCCCCSC---H-----HH-HHHHHHH-HHHHHHHHHHHCTTCEEEEEESC--TTSH
T ss_pred ---CCCCcEEEEeCcccCCc---c-----ch-hHHHHHH-HHHHHHHHhccCCCeEEEEEeCC--CCCh
Confidence 46799999999865431 0 01 1111122 7788889999999 88776655 5543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=85.95 E-value=7.3 Score=34.78 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=35.4
Q ss_pred EEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCcccEEEEcCCC
Q 041136 46 MVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMKFDVIIFNFPH 107 (214)
Q Consensus 46 l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH 107 (214)
...++.|......+ .|..|++...-.+..-+..-|+.++.. ...||.||.|.|-
T Consensus 264 ~~V~GvDid~~al~---~Ar~Na~~~gl~~~I~~~~~D~~~~~~-----~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 264 LNIIGGDIDARLIE---IAKQNAVEAGLGDLITFRQLQVADFQT-----EDEYGVVVANPPY 317 (393)
T ss_dssp CCEEEEESCHHHHH---HHHHHHHHTTCTTCSEEEECCGGGCCC-----CCCSCEEEECCCC
T ss_pred ceEEEEECCHHHHH---HHHHHHHHcCCCCceEEEECChHhCCC-----CCCCCEEEECCCC
Confidence 34566675555442 477787765433334566678888753 2479999999996
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=85.82 E-value=0.71 Score=41.75 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=62.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhC------------CCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CCEEEEc
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFG------------SATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GCLVLHG 81 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~------------~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~Vl~~ 81 (214)
....+||=.|=|.=+|..++++.+. ...++++.-++. +.. .-|..|+.. ... .+.+.+
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~--~~~---~lA~~nl~l-~g~~~~~~~i~~- 242 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTP--LVV---TLASMNLYL-HGIGTDRSPIVC- 242 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCH--HHH---HHHHHHHHH-TTCCSSCCSEEE-
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCH--HHH---HHHHHHHHH-hCCCcCCCCEee-
Confidence 3467888766444445555666531 113455544443 222 134455442 212 223333
Q ss_pred cccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHH-HhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 82 VNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIK-RHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 82 VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~-~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
-|+-.... ..+||.||-|.|..+.......-.+.... .....-..|++.+..+|+++|.+.+.+.+
T Consensus 243 gD~l~~~~-----~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 243 EDSLEKEP-----STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CCTTTSCC-----SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCCCCCcc-----cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 34433221 23799999999988754321110000000 00001236888888999999998666543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.75 E-value=5.6 Score=39.99 Aligned_cols=109 Identities=12% Similarity=-0.014 Sum_probs=68.1
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHh---CC--CEEEEccccccCCCCCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWS---RG--CLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~---~g--~~Vl~~VDAt~L~~~~~ 92 (214)
...+||-||=|.=.++..|++..++... .+++|..+++.+ .|.+++..... .| -..+..-|++++.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~--VtGVDIS~emLe---~AReRLa~~lnAkr~gl~nVefiqGDa~dLp---- 791 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQT--IIGVDISPKGLA---RAAKMLHVKLNKEACNVKSATLYDGSILEFD---- 791 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCE--EEEEESCHHHHH---HHHHHHHHHTTTTCSSCSEEEEEESCTTSCC----
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCe--EEEEECCHHHHH---HHHHHhhhccchhhcCCCceEEEECchHhCC----
Confidence 6789999996666667778876533234 456674444442 36565554421 12 2445566787764
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+....||.|+.+.--.- .....+..|++.+..+|+|| .+.|+.
T Consensus 792 ~~d~sFDlVV~~eVLeH--------------L~dp~l~~~L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEH--------------MEEDQACEFGEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp TTSCSCCEEEEESCGGG--------------SCHHHHHHHHHHHHHTTCCS-EEEEEE
T ss_pred cccCCeeEEEEeCchhh--------------CChHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 34578999999643211 12335667888999999998 666664
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=85.36 E-value=3.3 Score=38.20 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=60.9
Q ss_pred CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH----HhCC----CEEEEcccc
Q 041136 15 HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL----WSRG----CLVLHGVNV 84 (214)
Q Consensus 15 ~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L----~~~g----~~Vl~~VDA 84 (214)
....+++||=|| .|++++. +|...+. . -+++.|-.+++.+ -|..|++.+ +..| -.-+..-|+
T Consensus 170 ~l~~gd~VLDLGCGtG~l~l~--lA~~~g~--~-kVvGIDiS~~~le---lAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 170 KMTDDDLFVDLGSGVGQVVLQ--VAAATNC--K-HHYGVEKADIPAK---YAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp CCCTTCEEEEESCTTSHHHHH--HHHHCCC--S-EEEEEECCHHHHH---HHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred CCCCCCEEEEeCCCCCHHHHH--HHHHCCC--C-EEEEEeCCHHHHH---HHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 456788999999 6666655 6655542 2 3556675444432 355555443 2223 233445577
Q ss_pred ccCCCCCCCCC--CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 85 HTMDRHPTLSQ--MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 85 t~L~~~~~~~~--~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.++. +.. ..||.|+.|.+.... ..++.| . ....+|+|||.|.++
T Consensus 242 ~~lp----~~d~~~~aDVVf~Nn~~F~p------------dl~~aL-~----Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 242 LSEE----WRERIANTSVIFVNNFAFGP------------EVDHQL-K----ERFANMKEGGRIVSS 287 (438)
T ss_dssp TSHH----HHHHHHTCSEEEECCTTCCH------------HHHHHH-H----HHHTTSCTTCEEEES
T ss_pred cCCc----cccccCCccEEEEcccccCc------------hHHHHH-H----HHHHcCCCCcEEEEe
Confidence 7653 211 369999999875431 122333 2 234689999999654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=84.65 E-value=9.4 Score=32.66 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=66.1
Q ss_pred CCCCCCeEEEEecCchh-HHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFS-FSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFS-FS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.-..+++||++|-|..- ++..||+.+| .+++||+...+ +++.++++|+...+ -|...+.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~------------~~~~~~~lGa~~v~-~~~~~~~----- 232 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEH------------KKQDALSMGVKHFY-TDPKQCK----- 232 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSST------------THHHHHHTTCSEEE-SSGGGCC-----
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHH------------HHHHHHhcCCCeec-CCHHHHh-----
Confidence 35678999999988763 4555677775 37998875442 24456678886555 3433332
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC-CCCCcccHhhHHHhcCCEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD-HPYNQWNVMGLADKLGLVL 172 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~-~Py~~W~i~~lA~~~gl~l 172 (214)
. .+|.|+=. +|... -+..+..+|+++|++.+.=..+ .+....+...+....++.+
T Consensus 233 -~-~~D~vid~---~g~~~-------------------~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i 288 (348)
T 3two_A 233 -E-ELDFIIST---IPTHY-------------------DLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKV 288 (348)
T ss_dssp -S-CEEEEEEC---CCSCC-------------------CHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEE
T ss_pred -c-CCCEEEEC---CCcHH-------------------HHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEE
Confidence 2 68988743 33310 1233667889999986541111 2222234333332445555
Q ss_pred EE
Q 041136 173 KE 174 (214)
Q Consensus 173 ~~ 174 (214)
..
T Consensus 289 ~g 290 (348)
T 3two_A 289 YG 290 (348)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.44 E-value=2.4 Score=36.68 Aligned_cols=95 Identities=13% Similarity=0.211 Sum_probs=59.4
Q ss_pred EEcccccc-CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC----
Q 041136 79 LHGVNVHT-MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD---- 153 (214)
Q Consensus 79 l~~VDAt~-L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~---- 153 (214)
++.-|+.+ |. .+..++||.|+.+.|--..... ...+.. ...-...+...+..+..+|+++|.|.|.+.+.
T Consensus 17 ii~gD~~~~l~---~l~~~svDlI~tDPPY~~~~~~-~y~~~~-~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g 91 (323)
T 1boo_A 17 MYIGDSLELLE---SFPEESISLVMTSPPFALQRKK-EYGNLE-QHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKG 91 (323)
T ss_dssp EEESCHHHHGG---GSCSSCEEEEEECCCCSSSCSC-SSCSCH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETT
T ss_pred EEeCcHHHHHh---hCCCCCeeEEEECCCCCCCccc-ccCCcC-HHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCC
Confidence 34456664 33 2456789999999998543211 111111 12334578889999999999999999987653
Q ss_pred CCCC---ccc-HhhHHHhcCCEEEEEecC
Q 041136 154 HPYN---QWN-VMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 154 ~Py~---~W~-i~~lA~~~gl~l~~~~~F 178 (214)
.|+. .|. +..+....|+.+......
T Consensus 92 ~~~~~~~~~~~i~~~~~~~Gf~~~~~iiW 120 (323)
T 1boo_A 92 VPARSIYNFRVLIRMIDEVGFFLAEDFYW 120 (323)
T ss_dssp EEEECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CcccccchHHHHHHHHHhCCCEEEEEEEE
Confidence 2322 233 234557889988765544
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=83.96 E-value=2.8 Score=39.32 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=48.5
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcc-cHHH------------H--HHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQ-DTNL------------I--KRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN 157 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~-~~~~------------i--~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~ 157 (214)
+...+||.||-|.|-.+........ +..+ + ..+-.+ .|++.+..+|+++|++-|.+-+|-...
T Consensus 325 ~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~--~Fl~~~l~~Lk~gGr~aiVlP~g~L~~ 402 (544)
T 3khk_A 325 HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANF--AWMLHMLYHLAPTGSMALLLANGSMSS 402 (544)
T ss_dssp CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHH--HHHHHHHHTEEEEEEEEEEEETHHHHC
T ss_pred cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhH--HHHHHHHHHhccCceEEEEecchhhhc
Confidence 3457899999999997532111000 0000 0 011122 599999999999999866654433221
Q ss_pred ----cccHhhHHHhcCCEEEEEecCCCCCCCC
Q 041136 158 ----QWNVMGLADKLGLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 158 ----~W~i~~lA~~~gl~l~~~~~F~~~~yPg 185 (214)
.-.|.+.-.+.+. +...+.+....|.+
T Consensus 403 ~~~~~~~iRk~Lle~~~-l~aII~LP~~lF~~ 433 (544)
T 3khk_A 403 NTNNEGEIRKTLVEQDL-VECMVALPGQLFTN 433 (544)
T ss_dssp CGGGHHHHHHHHHHTTC-EEEEEECCTTBCCS
T ss_pred CcchHHHHHHHHHhCCc-HhEEEECCCCCCCC
Confidence 1234443333333 44555566666654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=83.62 E-value=2.1 Score=36.05 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=46.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-..+++||-||=|.=.++..|++.. ..++|.-.|. ++. +.+.++++. .+-..++.-|+.++.-......
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~--~~~---~~~~~~~~~---~~~v~~i~~D~~~~~~~~~~~~ 95 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDR--DLV---AFLQKKYNQ---QKNITIYQNDALQFDFSSVKTD 95 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCH--HHH---HHHHHHHTT---CTTEEEEESCTTTCCGGGSCCS
T ss_pred CCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCH--HHH---HHHHHHHhh---CCCcEEEEcchHhCCHHHhccC
Confidence 4568899999955444555577653 3666655553 333 124444433 2333445558887642111224
Q ss_pred CcccEEEEcCCC
Q 041136 96 MKFDVIIFNFPH 107 (214)
Q Consensus 96 ~~FD~IiFNFPH 107 (214)
.+|| ||.|.|.
T Consensus 96 ~~~~-vv~NlPY 106 (255)
T 3tqs_A 96 KPLR-VVGNLPY 106 (255)
T ss_dssp SCEE-EEEECCH
T ss_pred CCeE-EEecCCc
Confidence 6788 9999997
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=83.28 E-value=2 Score=36.71 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=31.6
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH 154 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~ 154 (214)
..+||.|+... + .+....+.....+......|+|||.+.+.+.+..
T Consensus 211 ~~~fDlI~crn--v------------liyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE~~ 256 (274)
T 1af7_A 211 PGPFDAIFCRN--V------------MIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENF 256 (274)
T ss_dssp CCCEEEEEECS--S------------GGGSCHHHHHHHHHHHGGGEEEEEEEEECTTCCC
T ss_pred CCCeeEEEECC--c------------hHhCCHHHHHHHHHHHHHHhCCCcEEEEEecccc
Confidence 35799999831 1 1223445567777788899999999998765543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=83.22 E-value=2.5 Score=35.91 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CCEEEE-ccccccCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GCLVLH-GVNVHTMDRHPT 92 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~Vl~-~VDAt~L~~~~~ 92 (214)
..++.+||=||=|-=.||..|++. + .|+|.=+... +.. +.++....+.. ++.++. ..|++.|.
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~-~---~V~gVD~s~m--~~~----a~~~~~~~~~~~~~v~~~~~~~D~~~l~---- 145 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ-P---NVREVKAYTL--GTS----GHEKPRLVETFGWNLITFKSKVDVTKME---- 145 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS-T---TEEEEEEECC--CCT----TSCCCCCCCCTTGGGEEEECSCCGGGCC----
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc-C---CEEEEECchh--hhh----hhhchhhhhhcCCCeEEEeccCcHhhCC----
Confidence 457889999994433444557765 2 5766544331 110 00000000111 344432 56888764
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCC--EEEEEecCCCCCC
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGG--EVHVTLRDDHPYN 157 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G--~i~VTl~~~~Py~ 157 (214)
..+||.|+.++.|+... .. + .+...+. .+..+..+|+||| .+.+.... |+.
T Consensus 146 --~~~fD~Vvsd~~~~~~~---~~-----~-d~~~~l~-~L~~~~r~LkpGG~~~~v~~~~~--~~~ 198 (276)
T 2wa2_A 146 --PFQADTVLCDIGESNPT---AA-----V-EASRTLT-VLNVISRWLEYNQGCGFCVKVLN--PYS 198 (276)
T ss_dssp --CCCCSEEEECCCCCCSC---HH-----H-HHHHHHH-HHHHHHHHHHHSTTCEEEEEESC--CCS
T ss_pred --CCCcCEEEECCCcCCCc---hh-----h-hHHHHHH-HHHHHHHHhccCCCcEEEEEeCC--CCc
Confidence 46799999999865431 00 1 1111122 6788889999999 88776554 554
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=80.59 E-value=5.2 Score=33.22 Aligned_cols=83 Identities=8% Similarity=0.107 Sum_probs=52.3
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLK 173 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~ 173 (214)
..++||.|+.+.|---.......-. ....-..++...+..+..+|+++|.|+|.+.+ +..-.+..+..+.|+.+.
T Consensus 20 ~~~~vdlI~~DPPY~~~~~~~d~~~--~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d---~~~~~~~~~~~~~gf~~~ 94 (260)
T 1g60_A 20 ENKSVQLAVIDPPYNLSKADWDSFD--SHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---FNCAFICQYLVSKGMIFQ 94 (260)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCS--SHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---HHHHHHHHHHHHTTCEEE
T ss_pred cccccCEEEECCCCCCCcccccccC--CHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc---HHHHHHHHHHHhhcccee
Confidence 3468999999999853211000000 01234567888899999999999999888632 222234445567788887
Q ss_pred EEecCCCC
Q 041136 174 EKVEFLKQ 181 (214)
Q Consensus 174 ~~~~F~~~ 181 (214)
........
T Consensus 95 ~~iiW~K~ 102 (260)
T 1g60_A 95 NWITWDKR 102 (260)
T ss_dssp EEEEECCC
T ss_pred EEEEEEec
Confidence 76555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 214 | |||
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.26 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.2 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.16 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 97.89 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 97.82 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 97.8 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 97.73 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 97.6 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 97.58 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 97.57 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 97.54 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 97.53 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.44 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.44 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 97.4 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.38 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.37 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.25 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 97.22 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 97.09 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 97.02 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 97.02 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 96.97 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 96.94 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 96.89 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 96.88 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 96.83 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 96.78 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 96.51 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 96.47 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 96.46 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.45 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.35 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 96.29 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 96.24 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 96.22 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 96.22 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 96.19 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 96.19 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 96.19 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 96.01 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 96.01 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 95.99 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 95.96 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 95.91 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 95.78 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 95.51 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 95.48 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 95.46 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 95.46 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 95.45 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 95.29 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.15 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 95.13 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 95.1 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 95.09 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 94.98 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 94.94 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 94.83 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 94.65 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 94.51 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 93.89 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 93.81 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 93.55 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 93.54 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 92.4 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 92.18 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 92.04 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 91.12 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 90.17 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 90.04 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 89.61 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 89.41 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 89.08 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 88.76 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 88.19 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 87.75 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 87.32 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 86.9 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 85.96 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 85.65 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 85.59 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 83.66 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 83.14 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 83.05 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 81.82 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 80.38 |
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.26 E-value=9.6e-07 Score=70.00 Aligned_cols=110 Identities=19% Similarity=0.306 Sum_probs=71.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~~~ 93 (214)
+-.++++||-||=|.=.+|.+|++.. .+++++-++. ..+. .+.+|++.+.-.+..+ +..-|+.+ .+
T Consensus 49 ~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~-~~i~----~a~~n~~~~~l~~~~i~~~~~d~~~-----~~ 115 (194)
T d1dusa_ 49 VVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINR-RAIK----LAKENIKLNNLDNYDIRVVHSDLYE-----NV 115 (194)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCH-HHHH----HHHHHHHHTTCTTSCEEEEECSTTT-----TC
T ss_pred CcCCCCeEEEEeecCChhHHHHHhhc---cccceeeecc-ccch----hHHHHHHHhCCccceEEEEEcchhh-----hh
Confidence 34568899999944444555577643 3777765442 2222 4777877665434322 23334432 24
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
..++||.|+.|.|...+ .+.+..+++.+..+|+++|.++|.+..
T Consensus 116 ~~~~fD~Ii~~~p~~~~---------------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAG---------------KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TTSCEEEEEECCCSTTC---------------HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccCCceEEEEcccEEec---------------chhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 56789999999997543 235677899999999999998776543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.20 E-value=1.2e-06 Score=71.17 Aligned_cols=158 Identities=16% Similarity=0.308 Sum_probs=99.1
Q ss_pred ccccCCCCCC-eEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 11 KWISHYTNNQ-RILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 11 ~~~~~~~~~~-~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
+|-.-|.+.. .||-||=|+=-|+..||+.+. ..+++ +.|....... .+..+++.....++ -+...||..|..
T Consensus 21 ~w~~~F~~~~PlvLeIGcG~G~~~~~lA~~~p-~~~~i--GiD~~~~~i~---~a~~~~~~~~l~Nv-~~~~~Da~~l~~ 93 (204)
T d2fcaa1 21 KWNTVFGNDNPIHIEVGTGKGQFISGMAKQNP-DINYI--GIELFKSVIV---TAVQKVKDSEAQNV-KLLNIDADTLTD 93 (204)
T ss_dssp CHHHHHTSCCCEEEEECCTTSHHHHHHHHHCT-TSEEE--EECSCHHHHH---HHHHHHHHSCCSSE-EEECCCGGGHHH
T ss_pred HHHHHcCCCCceEEEEEecCcHHHHHHHHhCC-CCcEE--EeecchHHHH---HHHHHHHHHhccCc-hhcccchhhhhc
Confidence 3544444433 579999666566666998874 34444 6774433331 35555555443344 455679998764
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
.+....+|.|..+||-.-.+. +. ..+|-+-..|++....+|+|||.++|+- |..+|-.|-+..+.+...
T Consensus 94 --~~~~~~~d~v~i~fp~P~~k~----~h----~k~Rl~~~~~l~~~~r~LkpgG~l~i~T-D~~~y~~~~~~~~~~~~~ 162 (204)
T d2fcaa1 94 --VFEPGEVKRVYLNFSDPWPKK----RH----EKRRLTYSHFLKKYEEVMGKGGSIHFKT-DNRGLFEYSLKSFSEYGL 162 (204)
T ss_dssp --HCCTTSCCEEEEESCCCCCSG----GG----GGGSTTSHHHHHHHHHHHTTSCEEEEEE-SCHHHHHHHHHHHHHHTC
T ss_pred --ccCchhhhccccccccccchh----hh----cchhhhHHHHHHHHHHhCCCCcEEEEEE-CChHHHHHHHHHHHHCCC
Confidence 266788999999999776531 11 1233345789999999999999998862 556678887777776655
Q ss_pred CEEEEEecCCCCCCCCC
Q 041136 170 LVLKEKVEFLKQDFPGY 186 (214)
Q Consensus 170 l~l~~~~~F~~~~yPgY 186 (214)
+............++++
T Consensus 163 ~~~~~~~d~~~~~~~~~ 179 (204)
T d2fcaa1 163 LLTYVSLDLHNSNLEGN 179 (204)
T ss_dssp EEEEEESSGGGSSCTTC
T ss_pred ccccCChhhcccCCCCC
Confidence 54444444444445543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.16 E-value=4.5e-06 Score=67.59 Aligned_cols=159 Identities=19% Similarity=0.353 Sum_probs=97.9
Q ss_pred ccccccCCCC-CCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC
Q 041136 9 KVKWISHYTN-NQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM 87 (214)
Q Consensus 9 ~~~~~~~~~~-~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L 87 (214)
+.+|-.-|.+ ...||-||=|+=.|...||+.+. ..++++ .|-...... .+.+.+..+.-.++.+++ .||..|
T Consensus 21 ~~~w~~~f~~~~plvLdIGcG~G~~~~~lA~~~p-~~~~iG--id~~~~~v~---~a~~~~~~~~l~Ni~~~~-~da~~l 93 (204)
T d1yzha1 21 KAKWRDLFGNDNPIHVEVGSGKGAFVSGMAKQNP-DINYIG--IDIQKSVLS---YALDKVLEVGVPNIKLLW-VDGSDL 93 (204)
T ss_dssp TTTHHHHHTSCCCEEEEESCTTSHHHHHHHHHCT-TSEEEE--EESCHHHHH---HHHHHHHHHCCSSEEEEE-CCSSCG
T ss_pred hccHHHHcCCCCCeEEEEeccCCHHHHHHHHHCC-CCceEE--EeccHHHHH---HHHHhhhhhccccceeee-cCHHHH
Confidence 3456555644 34589999555555555888874 455555 553333221 355556665544555555 589988
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHh
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADK 167 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~ 167 (214)
... +....+|.|+.|||..-.+. +. +..|-+-..|+.....+|++||.++++- |...|-.|-++.+..
T Consensus 94 ~~~--~~~~~~~~i~i~fPdPw~K~----~h----~krRl~~~~~l~~~~~~LkpgG~l~i~T-D~~~Y~~~~le~~~~- 161 (204)
T d1yzha1 94 TDY--FEDGEIDRLYLNFSDPWPKK----RH----EKRRLTYKTFLDTFKRILPENGEIHFKT-DNRGLFEYSLVSFSQ- 161 (204)
T ss_dssp GGT--SCTTCCSEEEEESCCCCCSG----GG----GGGSTTSHHHHHHHHHHSCTTCEEEEEE-SCHHHHHHHHHHHHH-
T ss_pred hhh--ccCCceehhcccccccccch----hh----hhhhhhHHHHHHHHHHhCCCCcEEEEEE-CCccHHHHHHHHHHH-
Confidence 653 67788999999999886542 11 1223344789999999999999998852 334566666655544
Q ss_pred cCCEEEEE-ecCCCCCCCCC
Q 041136 168 LGLVLKEK-VEFLKQDFPGY 186 (214)
Q Consensus 168 ~gl~l~~~-~~F~~~~yPgY 186 (214)
.++..... .....+.++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~ 181 (204)
T d1yzha1 162 YGMKLNGVWLDLHASDFEGN 181 (204)
T ss_dssp HTCEEEEEESSGGGSCCCCC
T ss_pred CCcccccccccccccccCCC
Confidence 46655432 22334445543
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.89 E-value=1.4e-05 Score=68.68 Aligned_cols=157 Identities=16% Similarity=0.115 Sum_probs=93.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+++++||=+|-|.=.||.++|+. | +.. +|+.|..++.. ..+.+|++.+.-.+..-+..-||.+.-......+
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~-g-a~~--V~~vD~s~~al---~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~ 215 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIA-G-ADE--VIGIDKSPRAI---ETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKG 215 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHT-T-CSE--EEEEESCHHHH---HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTT
T ss_pred cCCCCeeecccCcccchhhhhhhc-C-CcE--EEeecCCHHHH---HHHHHHHHHcCCCccceeeechhhhhhHHHHhcc
Confidence 367899999986666666556654 2 333 55666544443 2577787766422223345556654221111245
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-CCcc-c-HhhHHHhcCCEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-YNQW-N-VMGLADKLGLVL 172 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-y~~W-~-i~~lA~~~gl~l 172 (214)
.+||+||.|.|..+... ++ ...-.....+++..|..+|+|||.++.+.|...- ...| + |.+.+.++|-.+
T Consensus 216 ~~fD~Vi~DpP~~~~~~--~~-----~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~~ 288 (324)
T d2as0a2 216 EKFDIVVLDPPAFVQHE--KD-----LKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL 288 (324)
T ss_dssp CCEEEEEECCCCSCSSG--GG-----HHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred CCCCchhcCCccccCCH--HH-----HHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCeE
Confidence 78999999999987531 11 1222345667788899999999999888776431 1222 2 334556677555
Q ss_pred EE--EecCCCCCCCCC
Q 041136 173 KE--KVEFLKQDFPGY 186 (214)
Q Consensus 173 ~~--~~~F~~~~yPgY 186 (214)
.- .+...+.++|--
T Consensus 289 ~~~~~~~~~~~DhP~~ 304 (324)
T d2as0a2 289 KMLEPYRTQAPDHPIL 304 (324)
T ss_dssp EESSCBBCSCTTSCCB
T ss_pred EEeeecCCCCCCCCCC
Confidence 44 334466677643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.82 E-value=4.9e-05 Score=63.41 Aligned_cols=127 Identities=10% Similarity=0.060 Sum_probs=84.9
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
..+++.+||-+|=|-=+||+.+|+. + +..|+|.-.+. +.. ..+.+|++.+.-.+....+.-||.++..
T Consensus 104 ~~~~g~~VlD~~aG~G~~~l~~a~~-~-~~~V~avd~n~--~a~---~~~~~N~~~n~l~~~v~~~~~D~~~~~~----- 171 (260)
T d2frna1 104 VAKPDELVVDMFAGIGHLSLPIAVY-G-KAKVIAIEKDP--YTF---KFLVENIHLNKVEDRMSAYNMDNRDFPG----- 171 (260)
T ss_dssp HCCTTCEEEETTCTTTTTHHHHHHH-T-CCEEEEECCCH--HHH---HHHHHHHHHTTCTTTEEEECSCTTTCCC-----
T ss_pred hcCCccEEEECcceEcHHHHHHHHh-C-CcEEEEecCCH--HHH---HHHHHHHHHhCCCceEEEEEcchHHhcc-----
Confidence 4578999999886655666667765 3 34666655544 222 2478888887655656667779988643
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec-CCCCCCccc---HhhHHHhcCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR-DDHPYNQWN---VMGLADKLGL 170 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~-~~~Py~~W~---i~~lA~~~gl 170 (214)
...||+||.|.|+.+. .|+..|..+|++||.||+... ...-...|. +..++...|+
T Consensus 172 ~~~~D~Ii~~~p~~~~--------------------~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~ 231 (260)
T d2frna1 172 ENIADRILMGYVVRTH--------------------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 231 (260)
T ss_dssp CSCEEEEEECCCSSGG--------------------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred CCCCCEEEECCCCchH--------------------HHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 4679999999998542 245567888999999988632 222223343 3457778888
Q ss_pred EEE
Q 041136 171 VLK 173 (214)
Q Consensus 171 ~l~ 173 (214)
.+.
T Consensus 232 ~v~ 234 (260)
T d2frna1 232 DVE 234 (260)
T ss_dssp EEE
T ss_pred ceE
Confidence 764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=97.80 E-value=0.00013 Score=60.10 Aligned_cols=145 Identities=15% Similarity=0.165 Sum_probs=95.5
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+|+..++||=||=|.=.++..|++++. ++.+|++|..+.+. .+.+++......+...+..-|..+ . +
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P---~~~~~~~Dlp~~~~----~a~~~~~~~~~~~ri~~~~~d~~~--~---~ 144 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAP---HLRGTLVELAGPAE----RARRRFADAGLADRVTVAEGDFFK--P---L 144 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCT---TCEEEEEECHHHHH----HHHHHHHHTTCTTTEEEEECCTTS--C---C
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhc---CcEEEEecChHHHH----HHHHHHhhcCCcceeeeeeeeccc--c---c
Confidence 3688999999999777778888999984 57888899754433 466666665444444444445432 1 1
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec----------------------
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---------------------- 151 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---------------------- 151 (214)
...||.|++.+=-... +.+=...+++.+.+.|+|||++.|.=.
T Consensus 145 -p~~~D~v~~~~vLh~~--------------~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~ 209 (256)
T d1qzza2 145 -PVTADVVLLSFVLLNW--------------SDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLT 209 (256)
T ss_dssp -SCCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHH
T ss_pred -cccchhhhcccccccc--------------CcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHh
Confidence 2359999987532222 112234557778999999999887621
Q ss_pred --CCCCCCcccHhhHHHhcCCEEEEEecCCCCCCCC
Q 041136 152 --DDHPYNQWNVMGLADKLGLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 152 --~~~Py~~W~i~~lA~~~gl~l~~~~~F~~~~yPg 185 (214)
.|.+++.=++.++.+++||.+.+..++.....|-
T Consensus 210 ~~~g~~rt~~e~~~ll~~AGf~~~~~~~~~~~~~~~ 245 (256)
T d1qzza2 210 FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPF 245 (256)
T ss_dssp HHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSS
T ss_pred hCCCccCCHHHHHHHHHHCCCceeEEEEeCCcCccC
Confidence 1222333346788999999999988777665553
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=0.00013 Score=61.55 Aligned_cols=139 Identities=19% Similarity=0.157 Sum_probs=90.2
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCC-hHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDS-ERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds-~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
+...+||-+|-|.=.-+.+||+.+. +...|+.|- .+.+. .|.+|++.+.-.++.++.+ |.- . .+..
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p---~~~v~avDis~~Al~----~A~~Na~~~~~~~v~~~~~-d~~---~--~~~~ 173 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERP---DCEIIAVDRMPDAVS----LAQRNAQHLAIKNIHILQS-DWF---S--ALAG 173 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCT---TSEEEEECSSHHHHH----HHHHHHHHHTCCSEEEECC-STT---G--GGTT
T ss_pred ccccceeeeehhhhHHHHHHHhhCC---cceeeeccchhHHHh----HHHHHHHHhCcccceeeec-ccc---c--ccCC
Confidence 4457899999998888888998874 344555663 33333 5888998886545554443 221 1 2345
Q ss_pred CcccEEEEcCCCCCCCCCC---Cccc----HHH--HHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHH
Q 041136 96 MKFDVIIFNFPHAGHSPPL---SEQD----TNL--IKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLAD 166 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~---~~~~----~~~--i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~ 166 (214)
.+||.||.|.|-+...... ...+ ... =..-...+..++..|..+|+++|.+.+-+-. .+.=.+.++++
T Consensus 174 ~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~---~q~~~v~~~l~ 250 (274)
T d2b3ta1 174 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW---QQGEAVRQAFI 250 (274)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS---SCHHHHHHHHH
T ss_pred CceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc---hHHHHHHHHHH
Confidence 7899999999998643100 0000 000 0112467889999999999999999886422 23345778888
Q ss_pred hcCCE
Q 041136 167 KLGLV 171 (214)
Q Consensus 167 ~~gl~ 171 (214)
++|+.
T Consensus 251 ~~gf~ 255 (274)
T d2b3ta1 251 LAGYH 255 (274)
T ss_dssp HTTCT
T ss_pred HCCCC
Confidence 88875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=97.60 E-value=0.0003 Score=57.24 Aligned_cols=143 Identities=23% Similarity=0.242 Sum_probs=87.7
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
..+++..++||=||=|.=.++..|++.+. ++.+|.+|..+.+. .+.+++......+..-+..-|+.+.
T Consensus 75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p---~~~~~~~D~~~~~~----~a~~~~~~~~~~~rv~~~~~D~~~~----- 142 (253)
T d1tw3a2 75 AYDWTNVRHVLDVGGGKGGFAAAIARRAP---HVSATVLEMAGTVD----TARSYLKDEGLSDRVDVVEGDFFEP----- 142 (253)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEECTTHHH----HHHHHHHHTTCTTTEEEEECCTTSC-----
T ss_pred hcCCccCCEEEEeCCCCCHHHHHHHHhcc---eeEEEEccCHHHHH----HHHHHHHHhhcccchhhccccchhh-----
Confidence 34788999999999555556666998874 57788888644332 3555555443223333444465431
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC----C---------------
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD----D--------------- 153 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~----~--------------- 153 (214)
....||.|+.++=-.-. ..+-...+++.+...|+|||.+.|.-.. +
T Consensus 143 -~~~~~D~v~~~~vlh~~--------------~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~ 207 (253)
T d1tw3a2 143 -LPRKADAIILSFVLLNW--------------PDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLV 207 (253)
T ss_dssp -CSSCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHH
T ss_pred -cccchhheeeccccccC--------------CchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHh
Confidence 12469999876432111 1122345688899999999999876221 1
Q ss_pred ----CCCCcccHhhHHHhcCCEEEEEecCCCCC
Q 041136 154 ----HPYNQWNVMGLADKLGLVLKEKVEFLKQD 182 (214)
Q Consensus 154 ----~Py~~W~i~~lA~~~gl~l~~~~~F~~~~ 182 (214)
..++.=++.++.+++||.+.+...+....
T Consensus 208 ~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~ 240 (253)
T d1tw3a2 208 FLGGALRTREKWDGLAASAGLVVEEVRQLPSPT 240 (253)
T ss_dssp HHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSS
T ss_pred hCCCcCCCHHHHHHHHHHCCCeEEEEEECCCCC
Confidence 11222234568889999998877665443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=97.58 E-value=0.00011 Score=61.00 Aligned_cols=126 Identities=15% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.++++||-+|=|.=++|.+||+..++...|++. |-.++.. ..|.+|++.....+...+..-|+.+. +..
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~v--D~~e~~~---~~A~~n~~~~~~~~nv~~~~~Di~~~-----~~~ 152 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVV--ERDEDNL---KKAMDNLSEFYDIGNVRTSRSDIADF-----ISD 152 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEE--CSCHHHH---HHHHHHHHTTSCCTTEEEECSCTTTC-----CCS
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEE--ECCHHHH---HHHHHHHHHhcCCCceEEEEeeeecc-----ccc
Confidence 4788999999988878888899998765556554 5444443 24778887654444444455566543 345
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC--cccHhhHHHhcCCEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN--QWNVMGLADKLGLVLK 173 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~--~W~i~~lA~~~gl~l~ 173 (214)
..||+|+.|.|..- .++..+..+|+|||.+.+. .|.- .=.+.+..+++|+...
T Consensus 153 ~~fD~V~ld~p~p~---------------------~~l~~~~~~LKpGG~lv~~----~P~i~Qv~~~~~~l~~~gf~~i 207 (250)
T d1yb2a1 153 QMYDAVIADIPDPW---------------------NHVQKIASMMKPGSVATFY----LPNFDQSEKTVLSLSASGMHHL 207 (250)
T ss_dssp CCEEEEEECCSCGG---------------------GSHHHHHHTEEEEEEEEEE----ESSHHHHHHHHHHSGGGTEEEE
T ss_pred ceeeeeeecCCchH---------------------HHHHHHHHhcCCCceEEEE----eCCcChHHHHHHHHHHCCCcee
Confidence 78999999987531 2356688999999999776 3421 1223344456788765
Q ss_pred EEe
Q 041136 174 EKV 176 (214)
Q Consensus 174 ~~~ 176 (214)
+..
T Consensus 208 ~~~ 210 (250)
T d1yb2a1 208 ETV 210 (250)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.57 E-value=0.0008 Score=54.78 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=92.3
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+.+++++||-+|=|.=+++..||+..|+...|+|.-+.. ...+ .+.+ ..+..+..+..-.|+.....++..
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~--~~l~---~a~~---~a~~~~~~~~i~~d~~~~~~~~~~ 140 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP--RVLR---ELVP---IVEERRNIVPILGDATKPEEYRAL 140 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH--HHHH---HHHH---HHSSCTTEEEEECCTTCGGGGTTT
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcH--HHHH---HHHH---HHHhcCCceEEEEECCCccccccc
Confidence 4788999999999888888888999998777788865543 2221 2322 234456666566678777665333
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC---CCccc----HhhHHH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP---YNQWN----VMGLAD 166 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P---y~~W~----i~~lA~ 166 (214)
...+|.|+.++||... ...++.+|..+|++||.+.|.++.... -.... +..+ .
T Consensus 141 -~~~vD~i~~d~~~~~~------------------~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l-~ 200 (227)
T d1g8aa_ 141 -VPKVDVIFEDVAQPTQ------------------AKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERE-L 200 (227)
T ss_dssp -CCCEEEEEECCCSTTH------------------HHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHH-H
T ss_pred -ccceEEEEEEccccch------------------HHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHH-H
Confidence 3579999999999752 224678899999999999888764221 11112 2222 2
Q ss_pred hcCCEEEEEecCC
Q 041136 167 KLGLVLKEKVEFL 179 (214)
Q Consensus 167 ~~gl~l~~~~~F~ 179 (214)
+.||.+.+.....
T Consensus 201 ~~gf~iie~i~L~ 213 (227)
T d1g8aa_ 201 SEYFEVIERLNLE 213 (227)
T ss_dssp HTTSEEEEEEECT
T ss_pred HcCCEEEEEEcCC
Confidence 4589988876443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=97.54 E-value=0.00024 Score=57.54 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=69.3
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
+++++||-||=|.=.++..+++.- ..++ |+.|-.++..+ .|.+....++...-..++..|+....- ...+
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~--~~~v--~GiD~S~~~l~---~A~~r~~~~~~~~~v~f~~~D~~~~~~---~~~~ 92 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAG--IGEY--YGVDIAEVSIN---DARVRARNMKRRFKVFFRAQDSYGRHM---DLGK 92 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHT--CSEE--EEEESCHHHHH---HHHHHHHTSCCSSEEEEEESCTTTSCC---CCSS
T ss_pred CCcCEEEEecccCcHHHHHHHHcC--CCeE--EEecCCHHHHH---HHHHHHHhcCCCcceEEEEcchhhhcc---cccc
Confidence 467899999944444455577653 1244 56774333331 355544444432234456667765432 2357
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||.|+.++=-.-. -.+.+-+..+|+.+..+|+|||.+.+|.
T Consensus 93 ~fD~V~~~~~l~~~------------~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 93 EFDVISSQFSFHYA------------FSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp CEEEEEEESCGGGG------------GSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cceEEEEcceeeec------------CCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 89999988721110 1245678899999999999999988764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.00013 Score=58.10 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=83.6
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+-....+||-||=|.=.++..|++... .. +|+.|..+++.+ .|.+++..... ...-++..|++++. +
T Consensus 56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~--v~~vD~s~~~l~---~ak~~~~~~~~-~~~~f~~~d~~~~~----~ 123 (222)
T d2ex4a1 56 PNKTGTSCALDCGAGIGRITKRLLLPLF--RE--VDMVDITEDFLV---QAKTYLGEEGK-RVRNYFCCGLQDFT----P 123 (222)
T ss_dssp --CCCCSEEEEETCTTTHHHHHTTTTTC--SE--EEEEESCHHHHH---HHHHHTGGGGG-GEEEEEECCGGGCC----C
T ss_pred cCCCCCCEEEEeccCCCHhhHHHHHhcC--CE--EEEeecCHHHhh---ccccccccccc-cccccccccccccc----c
Confidence 3456778999999444444444655442 23 556785454442 35554443322 22346677998875 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec---CCCC---------CCcccH
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR---DDHP---------YNQWNV 161 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~---~~~P---------y~~W~i 161 (214)
...+||.|+.++=- .. ....-+..+++.+..+|+++|.+.|+-. ++.. ++...+
T Consensus 124 ~~~~fD~I~~~~~l-~h-------------~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (222)
T d2ex4a1 124 EPDSYDVIWIQWVI-GH-------------LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVV 189 (222)
T ss_dssp CSSCEEEEEEESCG-GG-------------SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHH
T ss_pred cccccccccccccc-cc-------------chhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHH
Confidence 56889999987522 11 1112356788999999999999977622 1111 234457
Q ss_pred hhHHHhcCCEEEEEe
Q 041136 162 MGLADKLGLVLKEKV 176 (214)
Q Consensus 162 ~~lA~~~gl~l~~~~ 176 (214)
.++..++||.+.+..
T Consensus 190 ~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 190 RRIICSAGLSLLAEE 204 (222)
T ss_dssp HHHHHHTTCCEEEEE
T ss_pred HHHHHHcCCEEEEEE
Confidence 788999999987753
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.44 E-value=0.00021 Score=61.15 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=87.9
Q ss_pred cccccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEcccccc
Q 041136 10 VKWISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHT 86 (214)
Q Consensus 10 ~~~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~ 86 (214)
..++..+..+++||=+. .|.||-+ .+. +.+..+++. |...... ..+++|++...-. ...-+..-||-+
T Consensus 136 ~~l~~~~~~g~~VLdlf~~~G~~sl~--aa~--~ga~~V~~v--D~s~~a~---~~a~~N~~~n~l~~~~~~~i~~d~~~ 206 (317)
T d2b78a2 136 NELINGSAAGKTVLNLFSYTAAFSVA--AAM--GGAMATTSV--DLAKRSR---ALSLAHFEANHLDMANHQLVVMDVFD 206 (317)
T ss_dssp HHHHHTTTBTCEEEEETCTTTHHHHH--HHH--TTBSEEEEE--ESCTTHH---HHHHHHHHHTTCCCTTEEEEESCHHH
T ss_pred HHHHHHhhCCCceeecCCCCcHHHHH--HHh--CCCceEEEe--cCCHHHH---HHHHHHHHHhcccCcceEEEEccHHH
Confidence 34567889999997776 6666543 333 223345444 5333222 1477787655422 223455667644
Q ss_pred CCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCC-CCc--ccHhh
Q 041136 87 MDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHP-YNQ--WNVMG 163 (214)
Q Consensus 87 L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P-y~~--W~i~~ 163 (214)
.-+...-.+++||.||.|.|-.+...... .. ..+.. .+.++.|.++|+|||.+.++.|...- .+. ..|.+
T Consensus 207 ~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~-~~--~~~~~----~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~ 279 (317)
T d2b78a2 207 YFKYARRHHLTYDIIIIDPPSFARNKKEV-FS--VSKDY----HKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEK 279 (317)
T ss_dssp HHHHHHHTTCCEEEEEECCCCC-----CC-CC--HHHHH----HHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCEEEEcChhhccchhHH-HH--HHHHH----HHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHH
Confidence 21110123578999999999776432111 11 12233 34567789999999999988776431 111 22445
Q ss_pred HHHhcCCEEEEEecCCCCCCCC
Q 041136 164 LADKLGLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 164 lA~~~gl~l~~~~~F~~~~yPg 185 (214)
.+.+.+..+..... .+.+||-
T Consensus 280 a~~~~~~~~~~~~~-~~~DfP~ 300 (317)
T d2b78a2 280 GFGKQKHTYLDLQQ-LPSDFAV 300 (317)
T ss_dssp HHTTCCCEEEEEEC-CCTTSCC
T ss_pred HHHHcCCeEEEecc-CCCCCCC
Confidence 56667877765543 3445663
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.002 Score=52.83 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=90.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcccc-ccCCCC-CCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNV-HTMDRH-PTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDA-t~L~~~-~~~~ 94 (214)
++..+||=+|-|.=.-+.+||+... ..+++|+=.+.+.- . -|.+|++.+.-.+...+..+|. ..+... ....
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al-~----~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 133 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCF-N----YAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEES 133 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHH-H----HHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCC
T ss_pred cccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHH-H----HHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcc
Confidence 4556899999999889999998874 45777776655432 2 4889998887555444444443 333221 1223
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHh-------------------HHHHHHHHHHHHhccCCCCEEEEEecCCCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRH-------------------KNLLEAFLKNGREMLGEGGEVHVTLRDDHP 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n-------------------~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~P 155 (214)
..+||.||.|.|.+.........+....+.. -..+....+.|..++++.|-+..-+ |..
T Consensus 134 ~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~i--g~~ 211 (250)
T d2h00a1 134 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCML--GKK 211 (250)
T ss_dssp SCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEE--SST
T ss_pred cCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEe--cch
Confidence 5689999999999964321111110000000 1246667778888888877653332 233
Q ss_pred CCcccHhhHHHhcCCEEEEEecC
Q 041136 156 YNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 156 y~~W~i~~lA~~~gl~l~~~~~F 178 (214)
.+.=.|..+..+.|+.=.+..+|
T Consensus 212 ~~l~~i~~~L~~~g~~~i~~ie~ 234 (250)
T d2h00a1 212 CSLAPLKEELRIQGVPKVTYTEF 234 (250)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEE
T ss_pred hhHHHHHHHHHHcCCCeEEEEEe
Confidence 34455778888888865454444
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.40 E-value=0.00058 Score=57.05 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=85.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC--CCEEEEccccccCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR--GCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~--g~~Vl~~VDAt~L~~~~~~~ 94 (214)
+++++||.+|-|.=|.|++||+..++...| +++|..++..+ .|.+|++.+... ....+..-|+.+.. +.
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V--~~~d~~~~~~~---~Ar~n~~~~~~~~~~nv~~~~~d~~~~~----~~ 165 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVGPAGQV--ISYEQRADHAE---HARRNVSGCYGQPPDNWRLVVSDLADSE----LP 165 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEE--EEECSCHHHHH---HHHHHHHHHHTSCCTTEEEECSCGGGCC----CC
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhCCCcEE--EEecCCHHHHH---HHHHhhhhhccCCCceEEEEeccccccc----cc
Confidence 789999999999999999999999865554 45665555542 588899887432 23344455666542 45
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC--CcccHhhHH-HhcCCE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY--NQWNVMGLA-DKLGLV 171 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py--~~W~i~~lA-~~~gl~ 171 (214)
...||.|+.+-|..- .++..+..+|+|||.+.+. .|. +.+.+.+.. ..+|+.
T Consensus 166 ~~~fDaV~ldlp~P~---------------------~~l~~~~~~LkpGG~lv~~----~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 166 DGSVDRAVLDMLAPW---------------------EVLDAVSRLLVAGGVLMVY----VATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp TTCEEEEEEESSCGG---------------------GGHHHHHHHEEEEEEEEEE----ESSHHHHHHHHHHHHHHSSBC
T ss_pred CCCcceEEEecCCHH---------------------HHHHHHHhccCCCCEEEEE----eCccChHHHHHHHHHHcCCee
Confidence 688999999776531 2255688999999999877 352 344555544 456776
Q ss_pred EEEEe
Q 041136 172 LKEKV 176 (214)
Q Consensus 172 l~~~~ 176 (214)
..+..
T Consensus 221 ~i~~~ 225 (264)
T d1i9ga_ 221 EPRAW 225 (264)
T ss_dssp CCEEE
T ss_pred cceEE
Confidence 54433
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.38 E-value=0.00068 Score=55.46 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=89.9
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.|.....+||-||=|.=.++..|+..+. .+| +..|..+++.+ .|.++ +...+..-++..|+.++. +
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v--~~vD~s~~~l~---~a~~~---~~~~~~~~~~~~d~~~~~----~ 154 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLY--ATT--DLLEPVKHMLE---EAKRE---LAGMPVGKFILASMETAT----L 154 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHC--SEE--EEEESCHHHHH---HHHHH---TTTSSEEEEEESCGGGCC----C
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcC--ceE--EEEcCCHHHHH---hhhcc---ccccccceeEEccccccc----c
Confidence 3556788999999555556666777663 244 45575555442 23322 223333345566777654 4
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec--CCC------C-----CCccc
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR--DDH------P-----YNQWN 160 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~--~~~------P-----y~~W~ 160 (214)
...+||.|+.+..-.-. ...-+..||+.+..+|+++|.|.|.-. ... . ++.-.
T Consensus 155 ~~~~fD~I~~~~vl~hl--------------~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~ 220 (254)
T d1xtpa_ 155 PPNTYDLIVIQWTAIYL--------------TDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIH 220 (254)
T ss_dssp CSSCEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHH
T ss_pred CCCccceEEeecccccc--------------chhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHH
Confidence 56789999998753211 122366899999999999999987532 111 0 11224
Q ss_pred HhhHHHhcCCEEEEEec---CCCCCCCCC
Q 041136 161 VMGLADKLGLVLKEKVE---FLKQDFPGY 186 (214)
Q Consensus 161 i~~lA~~~gl~l~~~~~---F~~~~yPgY 186 (214)
+.++.+++||.+.+... |..+.||-|
T Consensus 221 ~~~l~~~aGf~ii~~~~q~~fP~~l~~V~ 249 (254)
T d1xtpa_ 221 YKRLFNESGVRVVKEAFQEEWPTDLFPLK 249 (254)
T ss_dssp HHHHHHHHTCCEEEEEECTTCCTTSCCEE
T ss_pred HHHHHHHcCCEEEEEEeeCCCCccceEEE
Confidence 77899999998877543 555566643
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=0.0012 Score=55.54 Aligned_cols=141 Identities=13% Similarity=0.080 Sum_probs=85.9
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
..+++++||-||=|-=+++.-+|+.++ .++++.++.. +++. .+.+.++.+...+...+.-.|.. ..
T Consensus 58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~-~q~~----~a~~~~~~~~l~~~v~~~~~d~~-------~~ 123 (291)
T d1kpia_ 58 NLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSE-NQYA----HDKAMFDEVDSPRRKEVRIQGWE-------EF 123 (291)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH-HHHH----HHHHHHHHSCCSSCEEEEECCGG-------GC
T ss_pred CCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchH-HHHH----HHHHHHHhhccchhhhhhhhccc-------cc
Confidence 467899999999776677777999986 3565554443 3332 24444444332222222222221 23
Q ss_pred CCcccEEEEc--CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe---cCC---------CC-----
Q 041136 95 QMKFDVIIFN--FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL---RDD---------HP----- 155 (214)
Q Consensus 95 ~~~FD~IiFN--FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl---~~~---------~P----- 155 (214)
..+||+|+.. |-|+|...+. ...+=...||+.+..+|+|||.+.|.. .+. .|
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~---------~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~ 194 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGD---------AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLR 194 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSC---------CSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHH
T ss_pred ccccceEeechhHHhcchhhhh---------hHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcc
Confidence 4679999864 8899853211 112346789999999999999986532 110 11
Q ss_pred ---------------CCcccHhhHHHhcCCEEEEEecC
Q 041136 156 ---------------YNQWNVMGLADKLGLVLKEKVEF 178 (214)
Q Consensus 156 ---------------y~~W~i~~lA~~~gl~l~~~~~F 178 (214)
-+.-.+..+++.+||.+.....+
T Consensus 195 ~~~fi~kyiFpgg~lps~~~~~~~~e~~gl~v~~~~~~ 232 (291)
T d1kpia_ 195 FIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRI 232 (291)
T ss_dssp HHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred cchHHHHHhcCCCCCCCHHHHHhhhcccccccceeeec
Confidence 02234556788899999886555
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.25 E-value=0.00018 Score=61.36 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=84.4
Q ss_pred cccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 12 WISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 12 ~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
|+... .+++||=++ .|.|| .++|+. +..| |+.|..+...+ .+++|++.+.-.+ ..+...|+.+..+
T Consensus 140 ~~~~~-~g~rVLDl~~gtG~~s--~~~a~g---~~~V--~~vD~s~~al~---~a~~n~~~ngl~~-~~~i~~d~~~~~~ 207 (318)
T d1wxxa2 140 YMERF-RGERALDVFSYAGGFA--LHLALG---FREV--VAVDSSAEALR---RAEENARLNGLGN-VRVLEANAFDLLR 207 (318)
T ss_dssp HGGGC-CEEEEEEETCTTTHHH--HHHHHH---EEEE--EEEESCHHHHH---HHHHHHHHTTCTT-EEEEESCHHHHHH
T ss_pred HHHHh-CCCeeeccCCCCcHHH--HHHHhc---CCcE--EeecchHHHHH---HHHHHHHHcCCCC-cceeeccHHHHhh
Confidence 44333 688999887 56555 456643 2344 56775444442 5778877654323 3445667766433
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC--cc-c-HhhHH
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN--QW-N-VMGLA 165 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~--~W-~-i~~lA 165 (214)
......++||.||.|.|..+... .+ +..-.....+.+..|..+|+|||.+.++.|... .+ .| + |.+.+
T Consensus 208 ~~~~~~~~fD~Vi~DpP~~~~~~--~~-----~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~-~~~~~f~~~v~~a~ 279 (318)
T d1wxxa2 208 RLEKEGERFDLVVLDPPAFAKGK--KD-----VERAYRAYKEVNLRAIKLLKEGGILATASCSHH-MTEPLFYAMVAEAA 279 (318)
T ss_dssp HHHHTTCCEEEEEECCCCSCCST--TS-----HHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT-SCHHHHHHHHHHHH
T ss_pred hhHhhhcCCCEEEEcCCccccch--HH-----HHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-cCHHHHHHHHHHHH
Confidence 21124578999999999887532 11 222344456778889999999999988877633 22 22 1 33445
Q ss_pred HhcCCEE
Q 041136 166 DKLGLVL 172 (214)
Q Consensus 166 ~~~gl~l 172 (214)
..+|-.+
T Consensus 280 ~~a~~~~ 286 (318)
T d1wxxa2 280 QDAHRLL 286 (318)
T ss_dssp HHTTCCE
T ss_pred HHcCCCE
Confidence 5666433
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.22 E-value=0.00073 Score=52.38 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=67.6
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.++..|++. +.+| |+.|..+++.+ .|+++..... ..+..+ ..|+++|. +..+
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~---~~~v--~giD~S~~~i~---~ak~~~~~~~-~~~~~~-~~d~~~l~----~~~~ 101 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY---GFEV--VGVDISEDMIR---KAREYAKSRE-SNVEFI-VGDARKLS----FEDK 101 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT---TCEE--EEEESCHHHHH---HHHHHHHHTT-CCCEEE-ECCTTSCC----SCTT
T ss_pred CCCCEEEEECCCcchhhhhHhhh---hccc--ccccccccchh---hhhhhhcccc-cccccc-cccccccc----ccCc
Confidence 56789999995555566668864 2355 55675444442 3444444432 234444 45888875 5678
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
+||.|+.++ .. + .....-+..+++.+..+|+|||.+.|+..
T Consensus 102 ~fD~I~~~~---~l---------~--~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 102 TFDYVIFID---SI---------V--HFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CEEEEEEES---CG---------G--GCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEec---ch---------h--hCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 899999874 11 0 00112255789999999999999877754
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.09 E-value=0.005 Score=49.00 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=86.0
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+.+++++||-||=|.=.++..|++..+. . ..++.|..++..+ .+.++. +..+..+..-.|+.+..... .
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~-g--~V~gvDis~~~i~---~a~~~a---~~~~ni~~i~~d~~~~~~~~-~ 121 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDE-G--IIYAVEYSAKPFE---KLLELV---RERNNIIPLLFDASKPWKYS-G 121 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTT-S--EEEEECCCHHHHH---HHHHHH---HHCSSEEEECSCTTCGGGTT-T
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccC-C--eEEEEeCCHHHHH---HHHHHh---hccCCceEEEeeccCccccc-c
Confidence 57889999999996666677778988753 2 4577786555442 233333 34455666667888766542 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC---CCCC-CcccHhhHHH--h
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD---DHPY-NQWNVMGLAD--K 167 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~---~~Py-~~W~i~~lA~--~ 167 (214)
....+|.|.-++||... ...|+..+..+|++||.+.|.++. +.+- ..+.+....+ +
T Consensus 122 ~~~~vd~v~~~~~~~~~------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~ 183 (209)
T d1nt2a_ 122 IVEKVDLIYQDIAQKNQ------------------IEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEME 183 (209)
T ss_dssp TCCCEEEEEECCCSTTH------------------HHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHH
T ss_pred ccceEEEEEecccChhh------------------HHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHH
Confidence 23457777778888652 124678889999999999888752 2111 1222322222 4
Q ss_pred cCCEEEEEe
Q 041136 168 LGLVLKEKV 176 (214)
Q Consensus 168 ~gl~l~~~~ 176 (214)
+||.+.+..
T Consensus 184 ~gf~i~E~i 192 (209)
T d1nt2a_ 184 GDFKIVKHG 192 (209)
T ss_dssp TTSEEEEEE
T ss_pred cCCEEEEEE
Confidence 699998865
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=97.02 E-value=0.0013 Score=54.61 Aligned_cols=127 Identities=17% Similarity=0.262 Sum_probs=84.4
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-.++++||-+|-|.=++|..||+..++...| +++|..++..+ .|.+|++.........+..-|+ .. .+..
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V--~~vD~~~~~~~---~A~~~~~~~g~~~~v~~~~~d~---~~--~~~~ 170 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKV--FAYEKREEFAK---LAESNLTKWGLIERVTIKVRDI---SE--GFDE 170 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEE--EEECCCHHHHH---HHHHHHHHTTCGGGEEEECCCG---GG--CCSC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEE--EEEeCCHHHHH---HHHHHHHHhccccCcEEEeccc---cc--cccc
Confidence 4789999999988888888899998754444 56775555542 5777777654222222222232 22 2556
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC--CcccHhhHHHhcCCEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY--NQWNVMGLADKLGLVLK 173 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py--~~W~i~~lA~~~gl~l~ 173 (214)
..||.|+.+.|..- .++..+..+|+|||.+.+. .|. +.-.+.+..+++|+...
T Consensus 171 ~~~D~V~~d~p~p~---------------------~~l~~~~~~LKpGG~lv~~----~P~~~Qv~~~~~~l~~~gF~~i 225 (266)
T d1o54a_ 171 KDVDALFLDVPDPW---------------------NYIDKCWEALKGGGRFATV----CPTTNQVQETLKKLQELPFIRI 225 (266)
T ss_dssp CSEEEEEECCSCGG---------------------GTHHHHHHHEEEEEEEEEE----ESSHHHHHHHHHHHHHSSEEEE
T ss_pred cceeeeEecCCCHH---------------------HHHHHHHhhcCCCCEEEEE----eCcccHHHHHHHHHHHCCceeE
Confidence 77999998776421 2467789999999999877 342 22345566677898877
Q ss_pred EEec
Q 041136 174 EKVE 177 (214)
Q Consensus 174 ~~~~ 177 (214)
+...
T Consensus 226 ~~~E 229 (266)
T d1o54a_ 226 EVWE 229 (266)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 7654
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=97.02 E-value=0.0032 Score=49.14 Aligned_cols=136 Identities=15% Similarity=0.279 Sum_probs=81.3
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+.+.+++++||-||=|.=.|+..|++.. .++ |+.|..++..+ .|+++++.....++. +..-|+++|.
T Consensus 10 ~~~l~~~~rVLDiGcG~G~~~~~l~~~~---~~v--~gvD~s~~~i~---~A~~~~~~~~~~~i~-~~~~d~~~l~---- 76 (231)
T d1vl5a_ 10 IAALKGNEEVLDVATGGGHVANAFAPFV---KKV--VAFDLTEDILK---VARAFIEGNGHQQVE-YVQGDAEQMP---- 76 (231)
T ss_dssp HHTCCSCCEEEEETCTTCHHHHHHGGGS---SEE--EEEESCHHHHH---HHHHHHHHTTCCSEE-EEECCC-CCC----
T ss_pred hcCCCCcCEEEEecccCcHHHHHHHHhC---CEE--EEEECCHHHHh---hhhhccccccccccc-cccccccccc----
Confidence 3577889999999944334445577653 244 56674444432 366666665433444 4445787764
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC--CC--------------C-
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD--DH--------------P- 155 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~--~~--------------P- 155 (214)
+..++||.|+.++= -- |-.=...+++.+..+|+|||.+.|+-.. .. +
T Consensus 77 ~~~~~fD~v~~~~~--l~--------------~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 140 (231)
T d1vl5a_ 77 FTDERFHIVTCRIA--AH--------------HFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDY 140 (231)
T ss_dssp SCTTCEEEEEEESC--GG--------------GCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCT
T ss_pred cccccccccccccc--cc--------------ccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhccc
Confidence 55688999987641 10 0001336788899999999998764211 00 0
Q ss_pred --CCcc---cHhhHHHhcCCEEEEEec
Q 041136 156 --YNQW---NVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 156 --y~~W---~i~~lA~~~gl~l~~~~~ 177 (214)
...| ++..+.+++||...+...
T Consensus 141 ~~~~~~~~~~~~~~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 141 SHHRAWKKSDWLKMLEEAGFELEELHC 167 (231)
T ss_dssp TCCCCCBHHHHHHHHHHHTCEEEEEEE
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1222 355677788998776443
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.0023 Score=50.99 Aligned_cols=104 Identities=18% Similarity=0.228 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
--+++++||.||=|.=.+|..||+..+....|++ .|..+++.+ .+.+|++.....++.+.++ |+.+.- ..
T Consensus 72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~--id~~~~~~~---~a~~~~~~~~~~n~~~~~~-d~~~~~----~~ 141 (213)
T d1dl5a1 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVS--VEYSRKICE---IAKRNVERLGIENVIFVCG-DGYYGV----PE 141 (213)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEE--EESCHHHHH---HHHHHHHHTTCCSEEEEES-CGGGCC----GG
T ss_pred hccccceEEEecCccchhHHHHHHHhCCCCcEEE--eecchhhHH---HhhhhHhhhcccccccccC-chHHcc----cc
Confidence 3678999999997776677779999876555555 454444442 4777877766555655543 555432 33
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...||+|+.++...-. -.+| ...|+|||.+.+.+
T Consensus 142 ~~~fD~I~~~~~~~~~--------------p~~l--------~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 142 FSPYDVIFVTVGVDEV--------------PETW--------FTQLKEGGRVIVPI 175 (213)
T ss_dssp GCCEEEEEECSBBSCC--------------CHHH--------HHHEEEEEEEEEEB
T ss_pred ccchhhhhhhccHHHh--------------HHHH--------HHhcCCCcEEEEEE
Confidence 5679999987632111 0122 24589999998865
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=96.94 E-value=0.0017 Score=51.39 Aligned_cols=107 Identities=11% Similarity=0.204 Sum_probs=69.5
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+.++++|||-||=|.=.++..|++.. .++ |+.|-.+.+.+ .|.++++...-.+ ..+..-|+.++. +
T Consensus 12 ~~~~~~~rILDiGcGtG~~~~~la~~~---~~v--~gvD~S~~~l~---~A~~~~~~~~~~~-~~~~~~d~~~~~----~ 78 (234)
T d1xxla_ 12 AECRAEHRVLDIGAGAGHTALAFSPYV---QEC--IGVDATKEMVE---VASSFAQEKGVEN-VRFQQGTAESLP----F 78 (234)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGGS---SEE--EEEESCHHHHH---HHHHHHHHHTCCS-EEEEECBTTBCC----S
T ss_pred hCCCCCCEEEEeCCcCcHHHHHHHHhC---CeE--EEEeCChhhhh---hhhhhhccccccc-cccccccccccc----c
Confidence 467899999999955555555687754 254 67884444332 3666666653323 444445777653 5
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..++||.|+.++--.=.. + ...+++.+..+|+|||.+.++
T Consensus 79 ~~~~fD~v~~~~~l~~~~-------------d---~~~~l~~~~r~LkpgG~~~~~ 118 (234)
T d1xxla_ 79 PDDSFDIITCRYAAHHFS-------------D---VRKAVREVARVLKQDGRFLLV 118 (234)
T ss_dssp CTTCEEEEEEESCGGGCS-------------C---HHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccceeeeeceeeccc-------------C---HHHHHHHHHHeeCCCcEEEEE
Confidence 678899999865321110 1 346788899999999998775
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.89 E-value=0.0023 Score=53.21 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=69.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-+++++||-||=|.=+++.-+++.++ .++++..+.. +++. .+++.++.....+.......|...+
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~-~q~~----~a~~~~~~~~l~~~~~~~~~d~~~~------- 114 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSK-NQHA----RCEQVLASIDTNRSRQVLLQGWEDF------- 114 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCH-HHHH----HHHHHHHTSCCSSCEEEEESCGGGC-------
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchH-HHHH----HHHHHHHhhccccchhhhhhhhhhh-------
Confidence 467899999999665567777888886 3555555443 3332 2555554443333344444555543
Q ss_pred CCcccEEE--EcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVII--FNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~Ii--FNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..+||+|+ ..|-|+|.+ =+..||+.+..+|+|||.+.|.
T Consensus 115 ~~~fD~i~si~~~eh~~~~----------------~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHE----------------NYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp CCCCSEEEEESCGGGTCGG----------------GHHHHHHHHHHHSCTTCEEEEE
T ss_pred ccchhhhhHhhHHHHhhhh----------------hHHHHHHHHHhccCCCceEEEE
Confidence 35799997 457787741 1568999999999999998663
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0025 Score=54.48 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=69.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC----------CCEEEEccccc
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR----------GCLVLHGVNVH 85 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~----------g~~Vl~~VDAt 85 (214)
-.++++||-+|-|.=++|.+||+..++...|+ ++|..++..+ .|++|++..... +...++.-|+.
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~--t~E~~~~~~~---~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~ 170 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVI--SFEVRKDHHD---LAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDIS 170 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEE--EEESSHHHHH---HHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTT
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEE--EecCCHHHHH---HHHHHHHHhhhhhhhhhhhccccceeEEecchh
Confidence 46799999999999999999999998655555 5676555542 588888876421 12223333554
Q ss_pred cCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 86 TMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 86 ~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.... .+....||+|+.+-|+.-. .+..+..+|+|||.+.+-
T Consensus 171 ~~~~--~~~~~~fD~V~LD~p~P~~---------------------~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 171 GATE--DIKSLTFDAVALDMLNPHV---------------------TLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp CCC---------EEEEEECSSSTTT---------------------THHHHGGGEEEEEEEEEE
T ss_pred hccc--ccCCCCcceEeecCcCHHH---------------------HHHHHHHhccCCCEEEEE
Confidence 4321 2456789999998886421 234588899999998776
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=96.83 E-value=0.004 Score=50.78 Aligned_cols=135 Identities=15% Similarity=0.123 Sum_probs=82.1
Q ss_pred cCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 14 SHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 14 ~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+.+++.+||-||=|.=.++..||++++ .+| |++|..+...+ .+.++.....-..-.-+...|+.+|. +
T Consensus 63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v--~gvD~s~~~i~---~a~~~~~~~gl~~~v~~~~~d~~~l~----~ 131 (282)
T d2o57a1 63 GVLQRQAKGLDLGAGYGGAARFLVRKFG--VSI--DCLNIAPVQNK---RNEEYNNQAGLADNITVKYGSFLEIP----C 131 (282)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHHC--CEE--EEEESCHHHHH---HHHHHHHHHTCTTTEEEEECCTTSCS----S
T ss_pred cCCCCCCEEEEeCCCCcHHHhhhhccCC--cEE--EEEeccchhhh---hhhccccccccccccccccccccccc----c
Confidence 4678999999999544455566888875 355 56674333331 24544444322222345567888774 4
Q ss_pred CCCcccEEEEcCC--CCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe---cCCCCCC-------c---
Q 041136 94 SQMKFDVIIFNFP--HAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL---RDDHPYN-------Q--- 158 (214)
Q Consensus 94 ~~~~FD~IiFNFP--H~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl---~~~~Py~-------~--- 158 (214)
...+||.|+...- |+.. ...+|+.+..+|+|||.+.++- .++.+.. .
T Consensus 132 ~~~sfD~V~~~~~l~h~~d------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSPD------------------KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL 193 (282)
T ss_dssp CTTCEEEEEEESCGGGCSC------------------HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTC
T ss_pred cccccchhhccchhhhccC------------------HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhcc
Confidence 5678999998743 3221 1357888999999999987752 2221110 0
Q ss_pred --c----cHhhHHHhcCCEEEEEec
Q 041136 159 --W----NVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 159 --W----~i~~lA~~~gl~l~~~~~ 177 (214)
| ....+++++|+.......
T Consensus 194 ~~~~s~~~~~~~l~~~Gf~~i~~~d 218 (282)
T d2o57a1 194 HDMGSLGLYRSLAKECGLVTLRTFS 218 (282)
T ss_dssp SSCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCceEEEEE
Confidence 1 124577888988766554
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.78 E-value=0.012 Score=49.02 Aligned_cols=104 Identities=18% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.-+++++||=||=|-=+++.-+|+.+| ..+++.++.. +++. .+.+.+++....+...+.-.|...+.
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~-~Q~~----~a~~~~~~~g~~~~v~~~~~d~~~~~------ 125 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSK-NQAN----HVQQLVANSENLRSKRVLLAGWEQFD------ 125 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCH-HHHH----HHHHHHHTCCCCSCEEEEESCGGGCC------
T ss_pred CCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccH-HHHH----HHHHHHHhhhhhhhhHHHHhhhhccc------
Confidence 457899999999888888888999996 4666666554 3332 25555554443444445555766553
Q ss_pred CCcccEEEE--cCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 95 QMKFDVIIF--NFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 95 ~~~FD~IiF--NFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.+||+|+. -|-|+|.+ | ...||+.+..+|+|||.+.|
T Consensus 126 -~~fD~i~si~~~eh~~~~-------------~---~~~~~~~~~r~LkpgG~~~l 164 (285)
T d1kpga_ 126 -EPVDRIVSIGAFEHFGHE-------------R---YDAFFSLAHRLLPADGVMLL 164 (285)
T ss_dssp -CCCSEEEEESCGGGTCTT-------------T---HHHHHHHHHHHSCTTCEEEE
T ss_pred -ccccceeeehhhhhcCch-------------h---HHHHHHHHHhhcCCCCcEEE
Confidence 46999864 57777742 1 23589999999999999754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.51 E-value=0.02 Score=46.04 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=86.0
Q ss_pred ccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 13 ISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 13 ~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
..|.+++.+||-||=|.=.++..||+.. +...|+| .|..+...+ .+.+ ..+..+..+..-.|+.....+..
T Consensus 69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~a--VDiS~~~i~---~a~~---~a~~~~ni~~i~~d~~~~~~~~~ 139 (230)
T d1g8sa_ 69 VMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYA--IEYAPRIMR---ELLD---ACAERENIIPILGDANKPQEYAN 139 (230)
T ss_dssp CCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEE--EESCHHHHH---HHHH---HTTTCTTEEEEECCTTCGGGGTT
T ss_pred hCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEE--EeCcHHHHH---HHHH---HHhhhcccceEEEeeccCccccc
Confidence 4689999999999977777777899875 3345554 564333331 1222 12334556666677777665422
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC------CCCc-ccHhhHH
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH------PYNQ-WNVMGLA 165 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~------Py~~-W~i~~lA 165 (214)
....+|.|+..+.|... ...++..+..+|++||.+.|.++... |... =++++..
T Consensus 140 -~~~~v~~i~~~~~~~~~------------------~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L 200 (230)
T d1g8sa_ 140 -IVEKVDVIYEDVAQPNQ------------------AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEIL 200 (230)
T ss_dssp -TCCCEEEEEECCCSTTH------------------HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHH
T ss_pred -ccceeEEeeccccchHH------------------HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHH
Confidence 22345556566665431 23456778999999999988876422 1111 1244566
Q ss_pred HhcCCEEEEEecCC
Q 041136 166 DKLGLVLKEKVEFL 179 (214)
Q Consensus 166 ~~~gl~l~~~~~F~ 179 (214)
+.+||.+.+...+.
T Consensus 201 ~~aGF~ive~idL~ 214 (230)
T d1g8sa_ 201 EAGGFKIVDEVDIE 214 (230)
T ss_dssp HHHTEEEEEEEECT
T ss_pred HHcCCEEEEEecCC
Confidence 77899999877554
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=96.47 E-value=0.0049 Score=48.91 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=65.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
..++||-||=|.=.++..|++.. .+ +|+.|..+++.+ .|.+++.... ..+.++ .-|++++.. .++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g---~~--v~GvD~S~~ml~---~A~~~~~~~~-~~v~~~-~~d~~~~~~-----~~~ 101 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF---KN--TWAVDLSQEMLS---EAENKFRSQG-LKPRLA-CQDISNLNI-----NRK 101 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS---SE--EEEECSCHHHHH---HHHHHHHHTT-CCCEEE-CCCGGGCCC-----SCC
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC---Cc--cEeeccchhhhh---hccccccccC-ccceee-ccchhhhcc-----ccc
Confidence 45789999955545565677752 24 468895555442 3555544322 245544 458887642 357
Q ss_pred ccEEEEcC---CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 98 FDVIIFNF---PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 98 FD~IiFNF---PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
||.|+..+ -|+- +.+=+..+|+++..+|+|||.+.+.+
T Consensus 102 fD~i~~~~~~~~~~~---------------~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 102 FDLITCCLDSTNYII---------------DSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp EEEEEECTTGGGGCC---------------SHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccccceeeeeeeccC---------------CHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 99998643 2222 24456779999999999999987764
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.46 E-value=0.0046 Score=51.39 Aligned_cols=108 Identities=23% Similarity=0.251 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++++||-||-|-=.+|+.+|++ | +..|+|. |..+.+. .+..++..........+..-|+.++. +.
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~-G-a~~V~ai--d~s~~~~----~a~~~~~~~~~~~~i~~~~~~~~~l~----~~ 99 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGV--DQSEILY----QAMDIIRLNKLEDTITLIKGKIEEVH----LP 99 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEE--ESSTHHH----HHHHHHHHTTCTTTEEEEESCTTTSC----CS
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHc-C-CCEEEEE--eCHHHHH----HHHHHHHHhCCCccceEEEeeHHHhc----Cc
Confidence 4456889999998854456666764 3 3466665 4333222 24444444443344555566777775 34
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVH 147 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~ 147 (214)
..+||.||.+....+.. +..++..++.....+|+|||.|.
T Consensus 100 ~~~~D~Ivse~~~~~~~-------------~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 100 VEKVDVIISEWMGYFLL-------------FESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CSCEEEEEECCCBTTBT-------------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred cccceEEEEeeeeeecc-------------cccccHHHHHHHHhcCCCCcEEe
Confidence 57899999986655431 23356666777788999999863
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.45 E-value=0.019 Score=48.27 Aligned_cols=148 Identities=18% Similarity=0.221 Sum_probs=93.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
..+++||=+-=|-=.=+..|+...+....|+|.-.+. .-+. ....|++.+...+ .+...-|++.+.. ...
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~-~r~~----~l~~~~~r~~~~~-i~~~~~d~~~~~~----~~~ 184 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDE-NRLR----ETRLNLSRLGVLN-VILFHSSSLHIGE----LNV 184 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCH-HHHH----HHHHHHHHHTCCS-EEEESSCGGGGGG----GCC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCH-HHHH----HHHHHHHHHHhhc-ccccccccccccc----ccc
Confidence 4566776544222222333666665555677655442 2222 3555666665433 4566678877653 346
Q ss_pred cccEEEEcCCCCCCCCCCCc------ccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC-CcccHhhHHHhcC
Q 041136 97 KFDVIIFNFPHAGHSPPLSE------QDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY-NQWNVMGLADKLG 169 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~------~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py-~~W~i~~lA~~~g 169 (214)
.||+|+-+-|+.|.+.-... .....+.....+=...+.+|..+|++||.+..+-|.-.|- +.+.|....++.+
T Consensus 185 ~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~ 264 (313)
T d1ixka_ 185 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD 264 (313)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred cccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCC
Confidence 79999999999987531111 1223355556777788899999999999998888887763 5666777777777
Q ss_pred CEEEE
Q 041136 170 LVLKE 174 (214)
Q Consensus 170 l~l~~ 174 (214)
+.+..
T Consensus 265 ~~~~~ 269 (313)
T d1ixka_ 265 VELLP 269 (313)
T ss_dssp EEEEC
T ss_pred CEEee
Confidence 66654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.35 E-value=0.00052 Score=57.51 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=82.9
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHHHHhCCCEEEEcccccc-CCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHT-MDRHPTL 93 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~-L~~~~~~ 93 (214)
..+.++||++|=|+-+-++.+.++.+ ...|++.-+|.+ -++.++|-. .+-..++.-.+.++.+ ||.. |.+
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~--~~~~~~~d~r~~i~~~-D~~~~l~~---- 144 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLP--SIAGKLDDPRVDVQVD-DGFMHIAK---- 144 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCH--HHHTTTTSTTEEEEES-CSHHHHHT----
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhCh--hhcccccCCCeEEEec-hHHHHHhh----
Confidence 35668999999999999988887653 346777777754 244445521 1223344445555554 7776 332
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCC----CcccHhhHHHhc
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPY----NQWNVMGLADKL 168 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py----~~W~i~~lA~~~ 168 (214)
..++||.||-+.|+..+.. . .-.-..||+.+++.|+++|-+.+-. +.|+ ..+.+..-.++.
T Consensus 145 ~~~~yDvIi~D~~~p~~~~---~---------~L~t~eFy~~~~~~L~~~Gv~v~q~--~s~~~~~~~~~~i~~tl~~~ 209 (274)
T d1iy9a_ 145 SENQYDVIMVDSTEPVGPA---V---------NLFTKGFYAGIAKALKEDGIFVAQT--DNPWFTPELITNVQRDVKEI 209 (274)
T ss_dssp CCSCEEEEEESCSSCCSCC---C---------CCSTTHHHHHHHHHEEEEEEEEEEC--CCTTTCHHHHHHHHHHHHTT
T ss_pred cCCCCCEEEEcCCCCCCcc---h---------hhccHHHHHHHHhhcCCCceEEEec--CCccccHHHHHHHHHhhhhh
Confidence 2467999999998854321 0 1125689999999999999876542 2332 235555544444
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.29 E-value=0.0015 Score=55.07 Aligned_cols=115 Identities=14% Similarity=0.193 Sum_probs=77.0
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccc-cCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVH-TMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt-~L~~~~~~~ 94 (214)
.+.++||++|=|+-+-++.+.++.+ ...|++.-+|.+- ++.++|.. .+-..+..-.+.++.+ ||. -|.+ ..
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~--~~~~~~~~~r~~i~~~-Da~~~l~~---~~ 151 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFP--DVAIGYEDPRVNLVIG-DGVAFLKN---AA 151 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCH--HHHGGGGSTTEEEEES-CHHHHHHT---SC
T ss_pred CCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhch--hhhccccCCCcEEEEc-cHHHHHhh---cc
Confidence 4668999999999999998888653 3467777777542 45555532 1222345555677766 544 3433 23
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..+||.||-+.+...+. ..+-.=..||+.+++.|+++|-+.+-+
T Consensus 152 ~~~yDvIi~D~~dp~~~------------~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 152 EGSYDAVIVDSSDPIGP------------AKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp TTCEEEEEECCCCTTSG------------GGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccCccEEEEcCCCCCCc------------chhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 45899999998874321 112245789999999999999887664
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0022 Score=51.24 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=69.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~~~~~~~ 95 (214)
..+.+||-||=|.=..+..|++..+ .+++ +.|..+++.+ .+.++. +..+.. .....||..+.. .+..
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~--~id~s~~~~~---~a~~~~---~~~~~~~~~~~~~~~~~~~--~~~~ 119 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHW--IIECNDGVFQ---RLRDWA---PRQTHKVIPLKGLWEDVAP--TLPD 119 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE--EEEE--EEECCHHHHH---HHHHHG---GGCSSEEEEEESCHHHHGG--GSCT
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC--CeEE--EeCCCHHHHH---HHHHHh---hhccccccccccccccccc--cccc
Confidence 4678999999777777777887542 3554 5564444332 233332 333332 333455555433 2556
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV 148 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V 148 (214)
.+||.|+|+..+.... -.|..-...||+.+..+|+|||.+.+
T Consensus 120 ~~fD~i~fD~~~~~~~-----------~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 120 GHFDGILYDTYPLSEE-----------TWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp TCEEEEEECCCCCBGG-----------GTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred ccccceeecccccccc-----------cccccCHHHHHHHHHHHcCCCcEEEE
Confidence 7899999998776531 12444567899999999999998765
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=96.22 E-value=0.0051 Score=47.37 Aligned_cols=121 Identities=18% Similarity=0.240 Sum_probs=76.5
Q ss_pred ccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC
Q 041136 13 ISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 13 ~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~ 90 (214)
+.++.+..+||-|| .|.|+.. |+ .+ ++.|..+.+. +..++.++. ++.-|+.++.
T Consensus 31 ~~~~~~~~~vLDiGcG~G~~~~~--~~-------~~--~giD~s~~~~----------~~a~~~~~~-~~~~d~~~l~-- 86 (208)
T d1vlma_ 31 VKCLLPEGRGVEIGVGTGRFAVP--LK-------IK--IGVEPSERMA----------EIARKRGVF-VLKGTAENLP-- 86 (208)
T ss_dssp HHHHCCSSCEEEETCTTSTTHHH--HT-------CC--EEEESCHHHH----------HHHHHTTCE-EEECBTTBCC--
T ss_pred HHhhCCCCeEEEECCCCcccccc--cc-------eE--EEEeCChhhc----------ccccccccc-cccccccccc--
Confidence 44455677999999 6655433 42 22 4567544333 223344555 4557887774
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC----------------
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH---------------- 154 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~---------------- 154 (214)
+..++||.|+.++ +=.. + .=...+++.+..+|+|||.+.++.-+..
T Consensus 87 --~~~~~fD~I~~~~--~l~h----------~----~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 148 (208)
T d1vlma_ 87 --LKDESFDFALMVT--TICF----------V----DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVF 148 (208)
T ss_dssp --SCTTCEEEEEEES--CGGG----------S----SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CC
T ss_pred --ccccccccccccc--cccc----------c----cccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccc
Confidence 4568899999874 2110 0 0134688999999999999977754321
Q ss_pred -----CCCcccHhhHHHhcCCEEEEE
Q 041136 155 -----PYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 155 -----Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.++...+..+.+++||...+.
T Consensus 149 ~~~~~~~s~~~l~~~l~~~Gf~~i~v 174 (208)
T d1vlma_ 149 YKNARFFSTEELMDLMRKAGFEEFKV 174 (208)
T ss_dssp STTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cccccCCCHHHHHHHHHHcCCeEEEE
Confidence 134556888999999986653
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.22 E-value=0.0062 Score=50.90 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=67.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
++++||-||-|.=-.|..+|++ | +..|+|.-.. +... .+.++++.....+...+..-|+.++. +...+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s--~~~~----~a~~~~~~n~~~~~v~~~~~~~~~~~----~~~~~ 100 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS--SISD----YAVKIVKANKLDHVVTIIKGKVEEVE----LPVEK 100 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECS--TTHH----HHHHHHHHTTCTTTEEEEESCTTTCC----CSSSC
T ss_pred CcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCc--HHHh----hhhhHHHHhCCccccceEeccHHHcc----cccce
Confidence 5789999996642334445653 3 3456655433 2222 24555655554455666667888775 45678
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV 146 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i 146 (214)
||.|+.+....+.. +..++..++.....+|+|||.|
T Consensus 101 ~D~ivs~~~~~~l~-------------~e~~~~~~l~~~~r~Lkp~G~i 136 (316)
T d1oria_ 101 VDIIISEWMGYCLF-------------YESMLNTVLHARDKWLAPDGLI 136 (316)
T ss_dssp EEEEEECCCBBTBT-------------BTCCHHHHHHHHHHHEEEEEEE
T ss_pred eEEEeeeeeeeeec-------------cHHHHHHHHHHHHhcCCCCeEE
Confidence 99999987765531 3446777888899999999986
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.011 Score=47.02 Aligned_cols=137 Identities=17% Similarity=0.106 Sum_probs=80.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
...++++||=||=|.=..+..|++.++ .. +|+.|-.+...+ .+.++.+..--.+...+..-|++.+ +.
T Consensus 30 ~l~pg~~VLDiGCG~G~~~~~la~~~~--~~--v~GvD~s~~~~~---~ar~~~~~~gl~~~v~~~~~d~~~~-----~~ 97 (245)
T d1nkva_ 30 RMKPGTRILDLGSGSGEMLCTWARDHG--IT--GTGIDMSSLFTA---QAKRRAEELGVSERVHFIHNDAAGY-----VA 97 (245)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHHTC--CE--EEEEESCHHHHH---HHHHHHHHTTCTTTEEEEESCCTTC-----CC
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHhcC--CE--EEEEecccchhh---HHHHHHHHhhccccchhhhhHHhhc-----cc
Confidence 467789999999433345556888774 23 467784443332 3455444432222234445688775 23
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe--cCCCC----------CCcc---
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL--RDDHP----------YNQW--- 159 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl--~~~~P----------y~~W--- 159 (214)
..+||.|+...=-.-. .=...+|+.+..+|+|||.+.|+- ....| ...|
T Consensus 98 ~~~fD~v~~~~~~~~~----------------~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (245)
T d1nkva_ 98 NEKCDVAACVGATWIA----------------GGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDF 161 (245)
T ss_dssp SSCEEEEEEESCGGGT----------------SSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGS
T ss_pred cCceeEEEEEehhhcc----------------CCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCccc
Confidence 5779999976422211 012457888999999999997762 12222 1111
Q ss_pred ----cHhhHHHhcCCEEEEEecCC
Q 041136 160 ----NVMGLADKLGLVLKEKVEFL 179 (214)
Q Consensus 160 ----~i~~lA~~~gl~l~~~~~F~ 179 (214)
++..++.++|+.+......+
T Consensus 162 ~~~~~~~~~~~~aG~~~v~~~~~~ 185 (245)
T d1nkva_ 162 LTLPGLVGAFDDLGYDVVEMVLAD 185 (245)
T ss_dssp CCHHHHHHHHHTTTBCCCEEEECC
T ss_pred CCHHHHHHHHHHcCCEEEEEEeCC
Confidence 25567788898877655444
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0015 Score=54.87 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=72.3
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
-.+.++||++|=|+-+-++.+.++.+ ..+|++.-+|..- ++.++|-. .+-..++.-.+.|+++ ||...-+. .
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~--~~~~~~~d~rv~i~~~-Da~~~l~~---~ 148 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLP--GMAIGYSSSKLTLHVG-DGFEFMKQ---N 148 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCH--HHHGGGGCTTEEEEES-CHHHHHHT---C
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhch--hhccccCCCCceEEEc-cHHHHHhc---C
Confidence 34668999999999999998887653 4577777777542 45555532 2223344445565554 66542221 2
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.++||.||-+.++..+. ...-.-..||+.++..|+++|-+.+-
T Consensus 149 ~~~yDvIi~D~~~p~~~------------~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 149 QDAFDVIITDSSDPMGP------------AESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp SSCEEEEEEECC-----------------------CHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCEEEEcCCCCCCc------------ccccccHHHHHHHHHhcCCCCeEEEe
Confidence 46799999999875321 11224568999999999999987554
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=96.19 E-value=0.0063 Score=47.79 Aligned_cols=108 Identities=16% Similarity=0.196 Sum_probs=67.1
Q ss_pred CCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 16 YTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 16 ~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.+++.+||-|| .|+.+.. |++... ..+.-.|+.|..+++.+ .|.+++.........-+...|+..+.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~--l~~~~~-~~~~~v~giD~S~~ml~---~A~~~~~~~~~~~~~~~~~~d~~~~~----- 105 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLS--ARRNIN-QPNVKIIGIDNSQPMVE---RCRQHIAAYHSEIPVEILCNDIRHVE----- 105 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHH--HHHTCC-CSSCEEEEECSCHHHHH---HHHHHHHTSCCSSCEEEECSCTTTCC-----
T ss_pred cCCCCEEEEeccchhhHHHH--HHHhhc-CCCCceEEeCCCHHHHH---HHHHHhHhhcccchhhhccchhhccc-----
Confidence 46778999999 6777766 777653 23566777996555542 46666665544334444555655432
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+|.|+.++=-.= .+.+=...+|+.+..+|+|||.+.+.
T Consensus 106 -~~~~d~i~~~~~l~~--------------~~~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 106 -IKNASMVILNFTLQF--------------LPPEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp -CCSEEEEEEESCGGG--------------SCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred -cccceeeEEeeeccc--------------cChhhHHHHHHHHHHhCCCCceeecc
Confidence 346788887641100 01112336888899999999998765
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.01 E-value=0.0064 Score=51.69 Aligned_cols=124 Identities=13% Similarity=0.058 Sum_probs=72.6
Q ss_pred ccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE-EEEccccccCCC
Q 041136 13 ISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL-VLHGVNVHTMDR 89 (214)
Q Consensus 13 ~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~-Vl~~VDAt~L~~ 89 (214)
+..++.+.+||=+. -|.||.+ +|.. +.. +|+.|..+...+ .+.+|++...-.... -+..-||.+.-+
T Consensus 127 ~~~~~~~~rVLdlf~~tG~~sl~--aa~~---GA~--V~~VD~s~~al~---~a~~N~~ln~~~~~~~~~i~~D~~~~l~ 196 (309)
T d2igta1 127 VETADRPLKVLNLFGYTGVASLV--AAAA---GAE--VTHVDASKKAIG---WAKENQVLAGLEQAPIRWICEDAMKFIQ 196 (309)
T ss_dssp HHHSSSCCEEEEETCTTCHHHHH--HHHT---TCE--EEEECSCHHHHH---HHHHHHHHHTCTTSCEEEECSCHHHHHH
T ss_pred HhhccCCCeEEEecCCCcHHHHH--HHhC---CCe--EEEEeChHHHHH---HHHHhhhhhcccCCcEEEEeCCHHHhHH
Confidence 34567888998776 6766554 4432 234 456886555442 588888765433322 234457765321
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE-EEEecC
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV-HVTLRD 152 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i-~VTl~~ 152 (214)
.....+.+||.||-|.|-.|......... ++. -+......|..||+++|.+ .+|.+.
T Consensus 197 ~~~~~~~~fD~IilDPP~f~~~~~~~~~~---~~~---~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 197 REERRGSTYDIILTDPPKFGRGTHGEVWQ---LFD---HLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp HHHHHTCCBSEEEECCCSEEECTTCCEEE---HHH---HHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred HHhhcCCCCCEEEECCCcccccccchhHH---HHH---HHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 11123578999999999876532222211 222 2334566799999999875 455433
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.01 E-value=0.0083 Score=44.97 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=69.9
Q ss_pred cccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 12 WISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 12 ~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
|+.++-++.+||=+|=|.=+|+...+. .| +.+ +|+.|...+..+ .+.+|++.+...+...++.-||++.-+
T Consensus 8 ~l~~~~~g~~vlDl~~GtG~~~iea~~-rg-a~~--v~~ve~~~~a~~---~~~~n~~~~~~~~~~~ii~~D~~~~l~-- 78 (152)
T d2esra1 8 MIGPYFNGGRVLDLFAGSGGLAIEAVS-RG-MSA--AVLVEKNRKAQA---IIQDNIIMTKAENRFTLLKMEAERAID-- 78 (152)
T ss_dssp HHCSCCCSCEEEEETCTTCHHHHHHHH-TT-CCE--EEEECCCHHHHH---HHHHHHHTTTCGGGEEEECSCHHHHHH--
T ss_pred HHHhhCCCCeEEEcCCccCHHHHHHHH-hC-cce--eeeehhchhhhh---hhhhhhhhcccccchhhhccccccccc--
Confidence 567788899999887444344432332 23 234 455554444331 467788877655545566679887432
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
...++||.|+.|.|-.. ......|..-. ...+|+++|.|.+....
T Consensus 79 -~~~~~fDiIf~DPPy~~-------------~~~~~~l~~i~--~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 79 -CLTGRFDLVFLDPPYAK-------------ETIVATIEALA--AKNLLSEQVMVVCETDK 123 (152)
T ss_dssp -HBCSCEEEEEECCSSHH-------------HHHHHHHHHHH--HTTCEEEEEEEEEEEET
T ss_pred -ccccccceeEechhhcc-------------chHHHHHHHHH--HCCCcCCCeEEEEEeCC
Confidence 23568999999999521 11233333322 34689999999887543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.029 Score=44.81 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=67.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHH-----HhCCCEEEEccccccCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSL-----WSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-----~~~g~~Vl~~VDAt~L~~~ 90 (214)
.+++++||.||=|.=-.+..||+..++...|+ ++|..+++.+ .|.+|++.. ...++.+.+ -|+....
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~--~ie~~~~l~~---~a~~~l~~~~~~~~~~~~~~~~~-gD~~~~~-- 145 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVI--GIDHIKELVD---DSVNNVRKDDPTLLSSGRVQLVV-GDGRMGY-- 145 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEE--EEESCHHHHH---HHHHHHHHHCTHHHHTSSEEEEE-SCGGGCC--
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEE--EEcCCHHHHH---HHHHhccccCcccccccceEEEE-eeccccc--
Confidence 57889999999877677777888877544444 5677777763 567777653 323344443 4666542
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
....+||+|+.+.-..-. -..| ...|++||.+.+.+.
T Consensus 146 --~~~~~fD~I~~~~~~~~i--------------p~~l--------~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 146 --AEEAPYDAIHVGAAAPVV--------------PQAL--------IDQLKPGGRLILPVG 182 (224)
T ss_dssp --GGGCCEEEEEECSBBSSC--------------CHHH--------HHTEEEEEEEEEEES
T ss_pred --chhhhhhhhhhhcchhhc--------------CHHH--------HhhcCCCcEEEEEEc
Confidence 345689999987532111 1122 356899999988764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=95.96 E-value=0.011 Score=46.02 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=60.7
Q ss_pred CCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 16 YTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 16 ~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
.++..+||-|| .|.++. .|++. + ..| |+.|..+++. +..++.+....+.-|+.+|. +
T Consensus 40 ~~~~~~vLDiGcG~G~~~~--~l~~~-~--~~v--~giD~s~~~l----------~~a~~~~~~~~~~~~~~~l~----~ 98 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSL--FLQER-G--FEV--VLVDPSKEML----------EVAREKGVKNVVEAKAEDLP----F 98 (246)
T ss_dssp CCSCCEEEEETCTTCHHHH--HHHTT-T--CEE--EEEESCHHHH----------HHHHHHTCSCEEECCTTSCC----S
T ss_pred cCCCCEEEEECCCCchhcc--ccccc-c--eEE--EEeecccccc----------cccccccccccccccccccc----c
Confidence 44678999999 666555 47664 2 355 5556434332 22223344334556888874 5
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
..++||.|+..+.=...-. + ...+|+.+.++|+|||.+.++.
T Consensus 99 ~~~~fD~ii~~~~~~~~~~------------d---~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 99 PSGAFEAVLALGDVLSYVE------------N---KDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp CTTCEEEEEECSSHHHHCS------------C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeeecchhhhhh------------h---HHHHHHHHHhhcCcCcEEEEEE
Confidence 5688999997654111000 1 2347888999999999998874
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=95.91 E-value=0.0069 Score=46.52 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=66.7
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.+..+.+||=+|=|.=+++...+.. | ..++ ..|..++..+ .+.+|++.+.-..-.+...+|+-. ......
T Consensus 38 ~~~~g~~vLDl~~G~G~~~i~a~~~-g--a~vv--~vD~~~~a~~---~~~~N~~~~~~~~~v~~~~~d~~~--~~~~~~ 107 (171)
T d1ws6a1 38 RYPRRGRFLDPFAGSGAVGLEAASE-G--WEAV--LVEKDPEAVR---LLKENVRRTGLGARVVALPVEVFL--PEAKAQ 107 (171)
T ss_dssp HCTTCCEEEEETCSSCHHHHHHHHT-T--CEEE--EECCCHHHHH---HHHHHHHHHTCCCEEECSCHHHHH--HHHHHT
T ss_pred cccCCCeEEEeccccchhhhhhhhc-c--chhh--hcccCHHHHh---hhhHHHHhhccccceeeeehhccc--cccccc
Confidence 4578889999997777777554443 3 3555 4686665542 578888876432223333444321 111134
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..+||.|+.|.|.... . .+++..++ ++.+|+++|.|.+...
T Consensus 108 ~~~fD~If~DPPY~~~---~-----------~~~l~~l~--~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 108 GERFTVAFMAPPYAMD---L-----------AALFGELL--ASGLVEAGGLYVLQHP 148 (171)
T ss_dssp TCCEEEEEECCCTTSC---T-----------THHHHHHH--HHTCEEEEEEEEEEEE
T ss_pred CCccceeEEccccccC---H-----------HHHHHHHH--HcCCcCCCeEEEEEec
Confidence 5789999999995321 0 12344444 3468999999887643
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.78 E-value=0.015 Score=44.53 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=76.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC-CCEEEEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR-GCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~-g~~Vl~~VDAt~L~~~~~~ 93 (214)
.-.++++||-+|=|-=++|.+||+.. ..|+ +.|-.++..+ .+.+|++.+.-. ++.++. -||.++..
T Consensus 30 ~~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~--avD~~~~~l~---~a~~n~~~~gl~~~v~~~~-gda~~~~~---- 96 (186)
T d1l3ia_ 30 EPGKNDVAVDVGCGTGGVTLELAGRV---RRVY--AIDRNPEAIS---TTEMNLQRHGLGDNVTLME-GDAPEALC---- 96 (186)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTTS---SEEE--EEESCHHHHH---HHHHHHHHTTCCTTEEEEE-SCHHHHHT----
T ss_pred CCCCCCEEEEEECCeEcccccccccc---eEEE--EecCCHHHHH---HHHHHHHHcCCCcceEEEE-Cchhhccc----
Confidence 34688999999966545566677653 3555 5675554442 588888776532 455554 57776542
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCC
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGL 170 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl 170 (214)
....||.|+.+-+... +..+++.+..+|+++|.+.+.... +-+...+.+.....|+
T Consensus 97 ~~~~~D~v~~~~~~~~-------------------~~~~~~~~~~~LkpgG~lvi~~~~--~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 97 KIPDIDIAVVGGSGGE-------------------LQEILRIIKDKLKPGGRIIVTAIL--LETKFEAMECLRDLGF 152 (186)
T ss_dssp TSCCEEEEEESCCTTC-------------------HHHHHHHHHHTEEEEEEEEEEECB--HHHHHHHHHHHHHTTC
T ss_pred ccCCcCEEEEeCcccc-------------------chHHHHHHHHHhCcCCEEEEEeec--cccHHHHHHHHHHcCC
Confidence 3467999998854311 235678899999999998776322 1133445555555555
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=95.51 E-value=0.037 Score=42.28 Aligned_cols=106 Identities=16% Similarity=0.114 Sum_probs=66.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...+||-||=|.=..+..|++. + ..++ +.|..++..+ .+.++.+... ....-..-.|++++. + ...
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~-g--~~v~--gvD~s~~~l~---~a~~~~~~~~-~~~~~~~~~d~~~~~----~-~~~ 95 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN-G--YDVT--AWDKNPASMA---NLERIKAAEG-LDNLQTDLVDLNTLT----F-DGE 95 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT-T--CEEE--EEESCHHHHH---HHHHHHHHTT-CTTEEEEECCTTTCC----C-CCC
T ss_pred CCCcEEEECCCCCHHHHHHHHH-h--hhhc--cccCcHHHHH---HHHHHhhhcc-ccchhhhheeccccc----c-ccc
Confidence 4459999998887788888875 2 3554 5664444332 2444433322 122333445655543 2 367
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
||.|+.++...-. +...+..+++.+..+|+++|.+.++..
T Consensus 96 fD~I~~~~~~~~~--------------~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 96 YDFILSTVVMMFL--------------EAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp EEEEEEESCGGGS--------------CTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccEEEEeeeeecC--------------CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999998765321 223567788899999999999877643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=95.48 E-value=0.018 Score=47.05 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=67.5
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEE-EEccccccCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLV-LHGVNVHTMDRHPTL 93 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~V-l~~VDAt~L~~~~~~ 93 (214)
..++..+||-||=|.=.++..|++.++.+..+ |+.|..+++.+ .|.+++.. .+..+ +..-|++++. +
T Consensus 24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v--~giD~s~~~l~---~a~~~~~~---~~~~~~f~~~d~~~~~----~ 91 (281)
T d2gh1a1 24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKY--TGIDSGETLLA---EARELFRL---LPYDSEFLEGDATEIE----L 91 (281)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEE--EEEECCHHHHH---HHHHHHHS---SSSEEEEEESCTTTCC----C
T ss_pred ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEE--EEEecchhHhh---hhhccccc---cccccccccccccccc----c
Confidence 35677899999977767777788877544445 55675444432 35554433 45444 3445777764 3
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
. .+||.|+.++=..-.. + ...+++.+.++|+|||.+.+.
T Consensus 92 ~-~~fD~v~~~~~l~~~~-------------d---~~~~l~~~~~~LkpgG~lii~ 130 (281)
T d2gh1a1 92 N-DKYDIAICHAFLLHMT-------------T---PETMLQKMIHSVKKGGKIICF 130 (281)
T ss_dssp S-SCEEEEEEESCGGGCS-------------S---HHHHHHHHHHTEEEEEEEEEE
T ss_pred c-CCceEEEEehhhhcCC-------------C---HHHHHHHHHHHcCcCcEEEEE
Confidence 2 4699999986322110 1 124678899999999998765
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=95.46 E-value=0.053 Score=44.20 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=73.8
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.++++||=||=|.=.+|.++++ ++ ..++| .|..++.. ..|.+|++... ..+.++. .|+... +...
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~-~g--~~V~g--vDis~~av---~~A~~na~~n~-~~~~~~~-~d~~~~-----~~~~ 183 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEK-LG--GKALG--VDIDPMVL---PQAEANAKRNG-VRPRFLE-GSLEAA-----LPFG 183 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH-TT--CEEEE--EESCGGGH---HHHHHHHHHTT-CCCEEEE-SCHHHH-----GGGC
T ss_pred CccCEEEEcccchhHHHHHHHh-cC--CEEEE--EECChHHH---HHHHHHHHHcC-CceeEEe-cccccc-----cccc
Confidence 5678999999544444555655 43 35654 56433333 14777776442 3445443 343321 3346
Q ss_pred cccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE-ecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 97 KFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT-LRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 97 ~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT-l~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
+||.|+-|.. ...+..++....++|+|||.+.++ +-. .+.=.|.+.++++|+.+.+.
T Consensus 184 ~fD~V~ani~-------------------~~~l~~l~~~~~~~LkpGG~lilSgil~---~~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 184 PFDLLVANLY-------------------AELHAALAPRYREALVPGGRALLTGILK---DRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp CEEEEEEECC-------------------HHHHHHHHHHHHHHEEEEEEEEEEEEEG---GGHHHHHHHHHHTTCEEEEE
T ss_pred ccchhhhccc-------------------cccHHHHHHHHHHhcCCCcEEEEEecch---hhHHHHHHHHHHCCCEEEEE
Confidence 8999999832 113455677788899999999875 111 12224667788899988764
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=95.46 E-value=0.0038 Score=52.77 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=71.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.++||++|=|+-+-++.+.++. +...|++.-+|.+ -++.++|-. .+-..++.-.+.|+++ ||.+.-+. ..
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~--~~~~~~~d~rv~v~~~-Da~~~l~~---~~ 160 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLK--QTSCGFDDPRAEIVIA-NGAEYVRK---FK 160 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCH--HHHGGGGCTTEEEEES-CHHHHGGG---CS
T ss_pred CCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHH--hhcccccCCCcEEEhh-hHHHHHhc---CC
Confidence 567899999999998888887755 3457888778754 244455521 2223355555666664 66542221 24
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
++||.||-+.+..-... ..+-.-..||+.++..|+++|-+.+-
T Consensus 161 ~~yDvIi~D~~dp~~~~-----------~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 161 NEFDVIIIDSTDPTAGQ-----------GGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp SCEEEEEEEC---------------------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEEEEcCCCCCcCc-----------hhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 67999999987642110 11223578999999999999977554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.45 E-value=0.024 Score=44.44 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
..++.++||-|| .|.+|. .|+++ + .++ |+.|..+.+.+ .|.+++.... ..+. ++.-|+++|.
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~--~l~~~-~--~~v--~gvD~s~~mi~---~a~~~~~~~~-~~i~-~~~~d~~~l~---- 101 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTL--ELAER-G--YEV--VGLDLHEEMLR---VARRKAKERN-LKIE-FLQGDVLEIA---- 101 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHH--HHHHT-T--CEE--EEEESCHHHHH---HHHHHHHHTT-CCCE-EEESCGGGCC----
T ss_pred cCCCCCEEEEeCCCCCccch--hhccc-c--eEE--EEEeecccccc---cccccccccc-ccch-heehhhhhcc----
Confidence 455677999997 666654 47774 2 354 56685444442 3666554322 2333 4566888875
Q ss_pred CCCCcccEEEEcC---CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNF---PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNF---PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
+. +.||.|+..+ -|. +.+-+..+++++..+|+|||.+.|.+
T Consensus 102 ~~-~~fD~I~~~~~~~~~~----------------~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 102 FK-NEFDAVTMFFSTIMYF----------------DEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp CC-SCEEEEEECSSGGGGS----------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc-cccchHhhhhhhhhcC----------------ChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 33 4799999753 222 12233578999999999999987754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.02 Score=46.10 Aligned_cols=120 Identities=11% Similarity=0.037 Sum_probs=69.1
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHh---CCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEE-EEccccccCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAF---GSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLV-LHGVNVHTMDR 89 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~---~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~V-l~~VDAt~L~~ 89 (214)
..++.-+||-||=|.=.|+..|++++ .++..+..|+.|..+...+ .+.++++...... +.+ ++..++..+..
T Consensus 37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (280)
T d1jqea_ 37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA---KYKELVAKISNLENVKFAWHKETSSEYQS 113 (280)
T ss_dssp TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHH---HHHHHHTTCCSCTTEEEEEECSCHHHHHH
T ss_pred cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHH---HHHHHHhhccccccccccchhhhhhhhcc
Confidence 34555689999944333444455442 2345677899997665553 3444444433322 222 33333332110
Q ss_pred --CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCC
Q 041136 90 --HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDD 153 (214)
Q Consensus 90 --~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~ 153 (214)
.......+||.|+..+=..... =+..+++.+..+|+|||.+.|+..++
T Consensus 114 ~~~~~~~~~~fD~I~~~~~l~~~~----------------d~~~~l~~l~~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 114 RMLEKKELQKWDFIHMIQMLYYVK----------------DIPATLKFFHSLLGTNAKMLIIVVSG 163 (280)
T ss_dssp HHTTSSSCCCEEEEEEESCGGGCS----------------CHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred hhcccCCCCceeEEEEccceecCC----------------CHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 1124568899999976532221 02357788889999999998887653
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.1 Score=42.99 Aligned_cols=158 Identities=18% Similarity=0.135 Sum_probs=91.7
Q ss_pred CccccCccccccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCC--EE
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGC--LV 78 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~--~V 78 (214)
||.+++-.-.+..-..+++||=+- =|.=|.. ||... ....|+|.-.+.... . ...+| ++..|+ .+
T Consensus 87 QD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~--la~l~-~~~~i~a~d~~~~R~-~----~l~~~---~~r~g~~~~~ 155 (284)
T d1sqga2 87 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTH--ILEVA-PEAQVVAVDIDEQRL-S----RVYDN---LKRLGMKATV 155 (284)
T ss_dssp CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHH--HHHHC-TTCEEEEEESSTTTH-H----HHHHH---HHHTTCCCEE
T ss_pred ccccccccccccCccccceeEeccCccccchhh--hhhhh-hhhhhhhhhcchhhh-h----hHhhh---hhccccccee
Confidence 444444444444456677887664 5555544 66543 335677776654321 1 23334 444554 34
Q ss_pred EEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCccc------HHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 79 LHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQD------TNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 79 l~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~------~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
....|++.... .....||+|+-+-|+.|.+.-....+ ...+....+|=...+.+|.++|++||.+.-+-|.
T Consensus 156 ~~~~~~~~~~~---~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 156 KQGDGRYPSQW---CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp EECCTTCTHHH---HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred eeccccccchh---cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 44444432211 22467999999999998743111111 1123445566677788999999999999888898
Q ss_pred CCCCCccc-HhhHHH-hcCCEEEE
Q 041136 153 DHPYNQWN-VMGLAD-KLGLVLKE 174 (214)
Q Consensus 153 ~~Py~~W~-i~~lA~-~~gl~l~~ 174 (214)
-.|-...+ |....+ ..++.+..
T Consensus 233 ~~~~ENE~vv~~~l~~~~~~~~~~ 256 (284)
T d1sqga2 233 VLPEENSLQIKAFLQRTADAELCE 256 (284)
T ss_dssp CCGGGTHHHHHHHHHHCTTCEECS
T ss_pred CchhhCHHHHHHHHHhCCCcEEec
Confidence 77754444 444333 45676643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.13 E-value=0.0025 Score=54.47 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=67.1
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCCh-HHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSE-RTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~-~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
-.+.++||+||=|+-+-++.+.++.+ ..+|++.-+|.+ -++.++|-. .+-..++.-.+.|++ -||.+.-+ -.
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~--~~~~~~~dprv~i~i-~Da~~~l~---~~ 176 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLP--GMSCGFSHPKLDLFC-GDGFEFLK---NH 176 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCT--TTSGGGGCTTEEEEC-SCHHHHHH---HC
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhch--hhccccCCCCeEEEE-chHHHHHH---hC
Confidence 35678999999999999988887642 346776666643 234444421 111224433445544 35554211 12
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.++||.||-+.+..-+. .....-..||+.++..|+++|-+.+-
T Consensus 177 ~~~yDvII~D~~dp~~~------------~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 177 KNEFDVIITDSSDPVGP------------AESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp TTCEEEEEECCC-------------------------HHHHHHHHEEEEEEEEEE
T ss_pred CCCCCEEEEcCCCCCCc------------chhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 56799999998875321 12335689999999999999976554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=95.10 E-value=0.071 Score=44.50 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=82.3
Q ss_pred CCCCeE--EEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 17 TNNQRI--LLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 17 ~~~~~I--LlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
..+++| |..|-|.||.. ||+.. ..|+|. |..++.. .+|..|.+.+.-.++..+.+-....+... ...
T Consensus 211 ~~~~~vlDLycG~G~fsl~--La~~~---~~V~gv--E~~~~ai---~~A~~na~~n~i~n~~~~~~~~~~~~~~~-~~~ 279 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLP--LATQA---ASVVGV--EGVPALV---EKGQQNARLNGLQNVTFYHENLEEDVTKQ-PWA 279 (358)
T ss_dssp CTTCEEEEESCTTTTTHHH--HHTTS---SEEEEE--ESCHHHH---HHHHHHHHHTTCCSEEEEECCTTSCCSSS-GGG
T ss_pred CCCceEEEecccccccchh--ccccc---cEEEec--cCcHHHH---HHHHHhHHhcccccceeeecchhhhhhhh-hhh
Confidence 345666 55688988876 77654 357665 4333333 25788888776666776666555555432 233
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCc-ccHhhHHHhcCCEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQ-WNVMGLADKLGLVLK 173 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~-W~i~~lA~~~gl~l~ 173 (214)
...||.||.|.|=.|.. ..+ +.|+ + +++.--|+|+ |+ |.+. -++..| .+.||.+.
T Consensus 280 ~~~~d~vilDPPR~G~~--------~~~---~~l~----~-----~~~~~ivYVS-Cn--p~TlaRDl~~l-~~~gy~l~ 335 (358)
T d1uwva2 280 KNGFDKVLLDPARAGAA--------GVM---QQII----K-----LEPIRIVYVS-CN--PATLARDSEAL-LKAGYTIA 335 (358)
T ss_dssp TTCCSEEEECCCTTCCH--------HHH---HHHH----H-----HCCSEEEEEE-SC--HHHHHHHHHHH-HHTTCEEE
T ss_pred hccCceEEeCCCCccHH--------HHH---HHHH----H-----cCCCEEEEEe-CC--HHHHHHHHHHH-HHCCCeEe
Confidence 56799999999999962 111 2222 1 1343234665 43 4221 223222 25799999
Q ss_pred EEecCCCCCCCCCccc
Q 041136 174 EKVEFLKQDFPGYHNK 189 (214)
Q Consensus 174 ~~~~F~~~~yPgY~~~ 189 (214)
+..+|| +||.=.|-
T Consensus 336 ~i~~~D--~FP~T~Hv 349 (358)
T d1uwva2 336 RLAMLD--MFPHTGHL 349 (358)
T ss_dssp EEEEEC--CSTTSSCC
T ss_pred EEEEEe--cCCCCccE
Confidence 999999 89976664
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.038 Score=46.02 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=65.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+++||-||-|-=-.|+.+|++ | +..|+|.-.. +.+. .+.++++.........+..-|+.++. +...+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~-G-a~~V~avd~s--~~~~----~a~~~~~~~~~~~~i~~i~~~~~~l~----~~~~~ 105 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS--SIIE----MAKELVELNGFSDKITLLRGKLEDVH----LPFPK 105 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS--THHH----HHHHHHHHTTCTTTEEEEESCTTTSC----CSSSC
T ss_pred CcCEEEEeCCCCCHHHHHHHHh-C-CCEEEEEeCC--HHHH----HHHHHHHHhCccccceEEEeehhhcc----Ccccc
Confidence 5789999997754444445654 3 3456665443 2222 25556666555555556666777764 44678
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEV 146 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i 146 (214)
||.|+.+-...... +..++...+.....+|+|||.|
T Consensus 106 ~D~i~se~~~~~~~-------------~e~~~~~~~~a~~r~LkpgG~i 141 (328)
T d1g6q1_ 106 VDIIISEWMGYFLL-------------YESMMDTVLYARDHYLVEGGLI 141 (328)
T ss_dssp EEEEEECCCBTTBS-------------TTCCHHHHHHHHHHHEEEEEEE
T ss_pred eeEEEEEecceeec-------------cchhHHHHHHHHHhccCCCeEE
Confidence 99999876554331 2234556666778899999986
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=94.98 E-value=0.0062 Score=51.59 Aligned_cols=117 Identities=16% Similarity=0.299 Sum_probs=69.4
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
.+.++||++|=|+-+-++.+.++. +..+|++.-+|.+- ++.++|- ..-+-..++.-.+.|+++ ||...-+. ..
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f-~~~~~~~~~d~rv~i~~~-Da~~~l~~---~~ 149 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHM-PEWHQGAFDDPRAVLVID-DARAYLER---TE 149 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHC-HHHHTTGGGCTTEEEEES-CHHHHHHH---CC
T ss_pred CCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcC-cccccCccCCCceEEEEc-hHHHHhhh---cC
Confidence 567899999999998888887764 34567766666432 2333331 111111233334555544 66653211 24
Q ss_pred CcccEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 96 MKFDVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 96 ~~FD~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.+||.||-+.++. |.... ..+-.-..||+.+++.|+++|-+.+-
T Consensus 150 ~~yDvIi~D~~dp~~~~~~----------~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 150 ERYDVVIIDLTDPVGEDNP----------ARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp CCEEEEEEECCCCBSTTCG----------GGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred CcccEEEEeCCCcccccch----------hhhhhhHHHHHHHHHhcCCCceEEEe
Confidence 6799999988663 32110 01112368999999999999976543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.94 E-value=0.0078 Score=49.96 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=69.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChH-HHHhcCccH----HHHHHHHHhCCCEEEEccccccCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSER-TLKTKHWTS----QAHLQSLWSRGCLVLHGVNVHTMDRH 90 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~-~l~~kY~~a----~~ni~~L~~~g~~Vl~~VDAt~L~~~ 90 (214)
-.+.++||++|=|+.+-+..+.++ + ...|++.-+|..= ++.++|... .+.......-.+.|++ -||.+.-+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~-~Da~~~l~- 145 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI-GDGFEFIK- 145 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE-SCHHHHHH-
T ss_pred CCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE-ChHHHHHh-
Confidence 456789999999999888888763 3 3467776666432 334444321 1112222222345554 45553221
Q ss_pred CCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 91 PTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 91 ~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
..++||.||-+.|+..+. ..+-.=..||+.+++.|+++|-+.+-
T Consensus 146 ---~~~~yDvIi~D~~~~~~~------------~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 146 ---NNRGFDVIIADSTDPVGP------------AKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp ---HCCCEEEEEEECCCCC-----------------TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred ---ccCCCCEEEEeCCCCCCC------------cccccCHHHHHhhHhhcCCCceEEEe
Confidence 136799999999875321 11222468999999999999976543
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.83 E-value=0.27 Score=40.44 Aligned_cols=155 Identities=10% Similarity=0.012 Sum_probs=85.3
Q ss_pred CccccCccccccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEcc
Q 041136 3 QKKSNKKVKWISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGV 82 (214)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~V 82 (214)
||.+++-.-.+..-..+++||=+.=|-=+=+..||...+....|+|.-.+. .-+. ...+|++.+.-.+ ..+..-
T Consensus 79 QD~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~-~R~~----~l~~~l~r~g~~~-~~~~~~ 152 (293)
T d2b9ea1 79 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA-KRLA----SMATLLARAGVSC-CELAEE 152 (293)
T ss_dssp CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCH-HHHH----HHHHHHHHTTCCS-EEEEEC
T ss_pred cCCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCH-HHHH----HHHHHHHhcCccc-eeeeeh
Confidence 555555544444456678887665333333444777766555677766543 2222 2455666554333 455667
Q ss_pred ccccCCCCCCCCCCcccEEEEcCCCCCCCCCC-----------CcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 83 NVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPL-----------SEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 83 DAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~-----------~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
|++.+... .....+||+|+-+-|+.|.+.-. ++.+.+.+...| ..-+.+|.. |+++|.+.-+-|
T Consensus 153 d~~~~~~~-~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q---~~il~~a~~-l~~gG~lvYsTC 227 (293)
T d2b9ea1 153 DFLAVSPS-DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQ---QRALCHALT-FPSLQRLVYSTC 227 (293)
T ss_dssp CGGGSCTT-CGGGTTEEEEEECCCCCC------------------CCHHHHHHHH---HHHHHHHTT-CTTCCEEEEEES
T ss_pred hhhhhccc-ccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhh---HHhHHHhhh-cccccEEEEeec
Confidence 88877653 12236799999999999864210 111112122112 223455664 689999877778
Q ss_pred CCCCCCccc-HhhHHHhc
Q 041136 152 DDHPYNQWN-VMGLADKL 168 (214)
Q Consensus 152 ~~~Py~~W~-i~~lA~~~ 168 (214)
.-.|-...+ |....+++
T Consensus 228 Sl~~~ENe~vV~~~L~~~ 245 (293)
T d2b9ea1 228 SLCQEENEDVVRDALQQN 245 (293)
T ss_dssp CCCGGGTHHHHHHHHTTS
T ss_pred cCChhHhHHHHHHHHHhC
Confidence 777754444 44555444
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.051 Score=43.97 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=58.5
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQM 96 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~ 96 (214)
.+..+||-||=|.=.|+..|++... +..+++.|..+...+ .+.+. ..++. +.--|+++|. +...
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~---~~~~~giD~s~~~~~---~a~~~-----~~~~~-~~~~d~~~l~----~~~~ 146 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALP---EITTFGLDVSKVAIK---AAAKR-----YPQVT-FCVASSHRLP----FSDT 146 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCT---TSEEEEEESCHHHHH---HHHHH-----CTTSE-EEECCTTSCS----BCTT
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC---CCEEEEecchHhhhh---hhhcc-----ccccc-ceeeehhhcc----CCCC
Confidence 4567999999555555666888763 355667785444332 12211 12333 3445888764 6678
Q ss_pred cccEEEEcC-CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 97 KFDVIIFNF-PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 97 ~FD~IiFNF-PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
.||.|+.++ ||. ++.+..+|+|||.+.|+.
T Consensus 147 sfD~v~~~~~~~~------------------------~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 147 SMDAIIRIYAPCK------------------------AEELARVVKPGGWVITAT 177 (268)
T ss_dssp CEEEEEEESCCCC------------------------HHHHHHHEEEEEEEEEEE
T ss_pred CEEEEeecCCHHH------------------------HHHHHHHhCCCcEEEEEe
Confidence 899999765 321 122467899999998874
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.51 E-value=0.016 Score=47.37 Aligned_cols=115 Identities=23% Similarity=0.207 Sum_probs=68.7
Q ss_pred CCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhC---CCEEEEccccccCCCCCCC
Q 041136 17 TNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSR---GCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 17 ~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~---g~~Vl~~VDAt~L~~~~~~ 93 (214)
+..++||-||=|.=.++..||+. | .+ +|+.|-.+++.+ .|.++....+.. -..++..+|...+... ..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~-g--~~--v~gvD~S~~ml~---~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 125 (292)
T d1xvaa_ 55 HGCHRVLDVACGTGVDSIMLVEE-G--FS--VTSVDASDKMLK---YALKERWNRRKEPAFDKWVIEEANWLTLDKD-VP 125 (292)
T ss_dssp TTCCEEEESSCTTSHHHHHHHHT-T--CE--EEEEESCHHHHH---HHHHHHHHTTTSHHHHTCEEEECCGGGHHHH-SC
T ss_pred cCCCEEEEecCCCcHHHHHHHHc-C--Ce--eeeccCchHHHH---HHHHHHHhcccccccceeeeeeccccccccc-cC
Confidence 45789999995555566668875 3 34 567885554442 255544433221 1223344454443321 12
Q ss_pred CCCcccEEEEc---CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 94 SQMKFDVIIFN---FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 94 ~~~~FD~IiFN---FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
....||.|+.- +.|+.... ...+-+..+|+++..+|+|||.+.+++.
T Consensus 126 ~~~~fd~v~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 126 AGDGFDAVICLGNSFAHLPDSK-----------GDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CTTCEEEEEECSSCGGGSCCTT-----------SSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCceEEEEecCchhhcCCcc-----------cChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 34679999863 56765421 1223467789999999999999988764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=93.89 E-value=0.11 Score=40.41 Aligned_cols=131 Identities=15% Similarity=0.224 Sum_probs=75.1
Q ss_pred cccCCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCC
Q 041136 12 WISHYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHP 91 (214)
Q Consensus 12 ~~~~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~ 91 (214)
.+.+|....+||-||=|.=.|+..|++. + ..+ |+.|..++..+ .+++ ....++.++ ..|+.++.
T Consensus 14 ~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g--~~v--~giD~s~~~i~---~a~~----~~~~~~~~~-~~~~~~~~--- 77 (225)
T d2p7ia1 14 AFTPFFRPGNLLELGSFKGDFTSRLQEH-F--NDI--TCVEASEEAIS---HAQG----RLKDGITYI-HSRFEDAQ--- 77 (225)
T ss_dssp HHGGGCCSSCEEEESCTTSHHHHHHTTT-C--SCE--EEEESCHHHHH---HHHH----HSCSCEEEE-ESCGGGCC---
T ss_pred HhhhhCCCCcEEEEeCCCcHHHHHHHHc-C--CeE--EEEeCcHHHhh---hhhc----ccccccccc-cccccccc---
Confidence 3567888999999984444455667764 2 344 45564333221 1221 112345544 44666553
Q ss_pred CCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHH-hccCCCCEEEEEecCCC----------------
Q 041136 92 TLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGR-EMLGEGGEVHVTLRDDH---------------- 154 (214)
Q Consensus 92 ~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~-~lL~~~G~i~VTl~~~~---------------- 154 (214)
+ .++||.|+... +=-. .. + ...++.... .+|++||.+.|+.-+..
T Consensus 78 -~-~~~fD~I~~~~--vleh--~~---------d---~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~ 139 (225)
T d2p7ia1 78 -L-PRRYDNIVLTH--VLEH--ID---------D---PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHN 139 (225)
T ss_dssp -C-SSCEEEEEEES--CGGG--CS---------S---HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSST
T ss_pred -c-ccccccccccc--eeEe--cC---------C---HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhh
Confidence 2 46799999752 1100 01 1 234556665 78999999999863211
Q ss_pred --------------CCCcccHhhHHHhcCCEEEEEe
Q 041136 155 --------------PYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 155 --------------Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
.|+.=.+..+..++|+.+....
T Consensus 140 ~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 140 SAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp TCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred hhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 1122237789999999887644
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=93.81 E-value=0.11 Score=42.87 Aligned_cols=136 Identities=12% Similarity=0.112 Sum_probs=77.0
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
...++|.+|-|.=.-+.++++ . +...++|+=.+. +.+. -|..|++.+...+...++..|..... .....+
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~-~~~~v~a~Dis~-~Al~----~A~~Na~~~~~~~~~~i~~~~~~~~~---~~~~~~ 179 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-F-SDAIVFATDVSS-KAVE----IARKNAERHGVSDRFFVRKGEFLEPF---KEKFAS 179 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-H-SSCEEEEEESCH-HHHH----HHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTT
T ss_pred cccEEEEeeeeeehhhhhhhh-c-ccceeeechhhh-hHHH----HHHHHHHHcCCCceeEEeeccccccc---ccccCc
Confidence 345789999888888877875 3 345666653333 3332 48889887765555545554443321 123368
Q ss_pred ccEEEEcCCCCCCCCCCCcccH--H-HHHH-----hHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcC
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDT--N-LIKR-----HKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLG 169 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~--~-~i~~-----n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~g 169 (214)
||.||.|.|=+...... .... + .+.+ --.+++.++ +++|+++|.+.+-+-. .+.=.+..++...|
T Consensus 180 fDlIVsNPPYI~~~~~l-~~~~~~EP~~AL~gg~dGl~~~r~i~---~~~L~~~G~l~~Eig~---~Q~~~v~~l~~~~g 252 (271)
T d1nv8a_ 180 IEMILSNPPYVKSSAHL-PKDVLFEPPEALFGGEDGLDFYREFF---GRYDTSGKIVLMEIGE---DQVEELKKIVSDTV 252 (271)
T ss_dssp CCEEEECCCCBCGGGSC-TTSCCCSCHHHHBCTTTSCHHHHHHH---HHCCCTTCEEEEECCT---TCHHHHTTTSTTCE
T ss_pred ccEEEEcccccCccccc-ceeeeeccccccccccchHHHHHHHH---HHhcCCCCEEEEEECH---HHHHHHHHHHHhCC
Confidence 99999999977432110 0000 0 0000 012344443 5789999987776533 23345666777666
Q ss_pred C
Q 041136 170 L 170 (214)
Q Consensus 170 l 170 (214)
+
T Consensus 253 ~ 253 (271)
T d1nv8a_ 253 F 253 (271)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=93.55 E-value=0.11 Score=41.62 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=63.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
--+++++||.||-|.=.+|..||+..+ .|+| .|..+++.+ .|.+|+... .++.+.++ |+..- ...
T Consensus 67 ~l~~g~~VLdIG~GsGy~ta~La~l~~---~V~a--iE~~~~~~~---~A~~~~~~~--~nv~~~~~-d~~~g----~~~ 131 (224)
T d1vbfa_ 67 DLHKGQKVLEIGTGIGYYTALIAEIVD---KVVS--VEINEKMYN---YASKLLSYY--NNIKLILG-DGTLG----YEE 131 (224)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSS---EEEE--EESCHHHHH---HHHHHHTTC--SSEEEEES-CGGGC----CGG
T ss_pred hhcccceEEEecCCCCHHHHHHHHHhc---cccc--ccccHHHHH---HHHHHHhcc--cccccccC-chhhc----chh
Confidence 467899999999876566777777542 4554 555555542 355554432 34455444 44431 123
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHh
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVM 162 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~ 162 (214)
..+||+||.+..-.- + -..|+ ..|++||.+.+-+-.+.-...+.+.
T Consensus 132 ~~pfD~Iiv~~a~~~------------i--p~~l~--------~qLk~GGrLV~pvg~~~~q~l~~i~ 177 (224)
T d1vbfa_ 132 EKPYDRVVVWATAPT------------L--LCKPY--------EQLKEGGIMILPIGVGRVQKLYKVI 177 (224)
T ss_dssp GCCEEEEEESSBBSS------------C--CHHHH--------HTEEEEEEEEEEECSSSSEEEEEEE
T ss_pred hhhHHHHHhhcchhh------------h--hHHHH--------HhcCCCCEEEEEEcCCCceEEEEEE
Confidence 467999997632110 0 12232 4689999998876544322344443
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.54 E-value=0.083 Score=42.02 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=67.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQ 95 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~ 95 (214)
-+++++||.||-|.=-.|..||+..+ ..+ ++.|..+++.+ .+.+|++.+.-.++.++++ |+.... ...
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g--~~V--~~ie~~~~l~~---~a~~~l~~~g~~nv~~~~g-d~~~g~----~~~ 143 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVK--TDV--YTIERIPELVE---FAKRNLERAGVKNVHVILG-DGSKGF----PPK 143 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHC--SCE--EEEESCHHHHH---HHHHHHHHTTCCSEEEEES-CGGGCC----GGG
T ss_pred cCccceEEEecCCCChhHHHHHHhhC--cee--EEEeccHHHHH---HHHHHHHHcCCceeEEEEC-ccccCC----ccc
Confidence 57789999999887666767787765 234 45666566653 5888888877666666655 665422 345
Q ss_pred CcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 96 MKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 96 ~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
.+||+||.+---.. ....|+ ..|++||++.+-+..
T Consensus 144 ~pfD~Iiv~~a~~~--------------ip~~l~--------~qL~~gGrLv~pv~~ 178 (215)
T d1jg1a_ 144 APYDVIIVTAGAPK--------------IPEPLI--------EQLKIGGKLIIPVGS 178 (215)
T ss_dssp CCEEEEEECSBBSS--------------CCHHHH--------HTEEEEEEEEEEECS
T ss_pred CcceeEEeeccccc--------------CCHHHH--------HhcCCCCEEEEEEcc
Confidence 78999998522111 012232 348999999876654
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.40 E-value=0.14 Score=39.74 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=64.8
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+++||=+|-|.=.++.+++. .+ +..++|. |..++..+ .+.+|++.+.. .+.+ ..-|+.++ ..+
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~-~g-~~~v~~v--di~~~~~~---~a~~N~~~~~~-~~~~-~~~d~~~~-------~~~ 109 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALL-LG-AKEVICV--EVDKEAVD---VLIENLGEFKG-KFKV-FIGDVSEF-------NSR 109 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHH-TT-CSEEEEE--ESCHHHHH---HHHHHTGGGTT-SEEE-EESCGGGC-------CCC
T ss_pred CCCEEEECcCcchHHHHHHHH-cC-CCEEEEE--cCcHHHHH---HHHHHHHHcCC-CceE-EECchhhh-------CCc
Confidence 567999998555555554543 33 3355554 54333331 46677655432 2333 34466654 356
Q ss_pred ccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEEE
Q 041136 98 FDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 98 FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~~ 175 (214)
||.||.|.|--.... .... .|+..+..+ .+.++..+.. .+....-++.++...|+.+...
T Consensus 110 fD~Vi~nPP~~~~~~----------~~d~----~~l~~~~~~---~~~v~~ih~~-~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 110 VDIVIMNPPFGSQRK----------HADR----PFLLKAFEI---SDVVYSIHLA-KPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp CSEEEECCCCSSSST----------TTTH----HHHHHHHHH---CSEEEEEEEC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred CcEEEEcCccccccc----------cccH----HHHHHHHhh---cccchhcccc-hHHHHHHHHHHHhhcCceEEEE
Confidence 999999999632211 0111 233334333 2333332221 2222344667889999876553
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=92.18 E-value=0.11 Score=38.13 Aligned_cols=109 Identities=6% Similarity=-0.037 Sum_probs=62.8
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCE--------------EEE
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCL--------------VLH 80 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~--------------Vl~ 80 (214)
.-.++.|||-||=|.=..+.-||++ | . .+|++|.-++..+ .+.+.. +..+.. .++
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~-G--~--~V~gvD~S~~~i~---~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQ-G--Y--HVVGAELSEAAVE---RYFTER---GEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHH-C--C--EEEEEEECHHHHH---HHHHHH---CSCSEEEEETTEEEEECSSSEEE
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHc-C--C--ceEeecccHHHHH---HHHHHh---ccccchhhhhhhhhcccccccee
Confidence 4568899999996666678888875 3 3 4577784444332 133222 222211 122
Q ss_pred ccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 81 GVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 81 ~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
..|+..+.. .....||.|+...=.... +.+....+++....+|++||.+.+...
T Consensus 86 ~~d~~~l~~---~~~~~~D~i~~~~~l~~l--------------~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 86 CGDFFALTA---RDIGHCAAFYDRAAMIAL--------------PADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp EECCSSSTH---HHHHSEEEEEEESCGGGS--------------CHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred ccccccccc---ccccceeEEEEEeeeEec--------------chhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 233333321 234679999764433221 123445688889999999999866543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.18 Score=39.12 Aligned_cols=69 Identities=16% Similarity=0.068 Sum_probs=47.2
Q ss_pred CCCCcccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCC-------------CCC
Q 041136 93 LSQMKFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDH-------------PYN 157 (214)
Q Consensus 93 ~~~~~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~-------------Py~ 157 (214)
+....||.|+..| -|++. +++-+..+++....+|+|||.+.++-..+. +++
T Consensus 148 ~~~~~fD~i~~~~~l~~~~~--------------~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~ 213 (257)
T d2a14a1 148 AVLPLADCVLTLLAMECACC--------------SLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALE 213 (257)
T ss_dssp CCCCCEEEEEEESCHHHHCS--------------SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCC
T ss_pred ccCCcccEEeehhhHHHhcc--------------cHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCC
Confidence 4567899998754 23332 244567888999999999999866532211 123
Q ss_pred cccHhhHHHhcCCEEEEE
Q 041136 158 QWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 158 ~W~i~~lA~~~gl~l~~~ 175 (214)
.=.|.++.+++||.+.+.
T Consensus 214 ~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 214 KGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 344777899999998775
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=91.12 E-value=0.064 Score=41.28 Aligned_cols=115 Identities=12% Similarity=0.158 Sum_probs=69.5
Q ss_pred cccCCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCC
Q 041136 12 WISHYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 12 ~~~~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
++.++.++.+||=+. -|.+++. .+. .| +..+ |..|...+.. ..+..|++.+......-++..||.+.-+
T Consensus 35 ~l~~~~~~~~vLDlfaGsG~~g~e--a~s-rG-a~~v--~~ve~~~~a~---~~~~~N~~~~~~~~~~~i~~~D~~~~l~ 105 (182)
T d2fhpa1 35 MIGPYFDGGMALDLYSGSGGLAIE--AVS-RG-MDKS--ICIEKNFAAL---KVIKENIAITKEPEKFEVRKMDANRALE 105 (182)
T ss_dssp HHCSCCSSCEEEETTCTTCHHHHH--HHH-TT-CSEE--EEEESCHHHH---HHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred HHHHhcCCCEEEEcccccccccce--eee-cc-hhHH--HHHHHHHHHH---HHHHHHhhhhhcccccccccccchhhhh
Confidence 456788899998765 6666553 222 22 3334 4566544443 2578899888765556677889886422
Q ss_pred CCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 90 HPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 90 ~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
...-...+||.|+.+.|-.-. . ..++|.... ...+|+++|-|.+-+
T Consensus 106 ~~~~~~~~fDlIflDPPY~~~-------~------~~~~l~~i~--~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 106 QFYEEKLQFDLVLLDPPYAKQ-------E------IVSQLEKML--ERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHTTCCEEEEEECCCGGGC-------C------HHHHHHHHH--HTTCEEEEEEEEEEE
T ss_pred hhcccCCCcceEEechhhhhh-------H------HHHHHHHHH--HCCCCCCCEEEEEEc
Confidence 111135689999999995211 0 123333333 246899999887654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.17 E-value=0.095 Score=40.90 Aligned_cols=116 Identities=23% Similarity=0.357 Sum_probs=66.4
Q ss_pred CCCCeEE--EEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCC-CCC
Q 041136 17 TNNQRIL--LVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRH-PTL 93 (214)
Q Consensus 17 ~~~~~IL--lVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~-~~~ 93 (214)
.++..+| +.|.|++|.+ |++.++ ...|+ ++|-.++..+ .+.++++... +-..++..+..++... ..+
T Consensus 22 ~~~~~~lD~t~G~Gghs~~--il~~~~-~~~vi--~~D~d~~~l~---~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~ 91 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRA--ILEHCP-GCRII--GIDVDSEVLR---IAEEKLKEFS--DRVSLFKVSYREADFLLKTL 91 (192)
T ss_dssp CTTCEEEETTCTTSHHHHH--HHHHCT-TCEEE--EEESCHHHHH---HHHHHTGGGT--TTEEEEECCGGGHHHHHHHT
T ss_pred CCCCEEEEecCCCcHHHHH--HHhcCC-CCeEE--EeechHHHHH---HHHHhhcccc--ccccchhHHHhhHHHHHHHc
Confidence 4555665 4678888776 888874 34554 5554433331 2444443322 2344555555554331 113
Q ss_pred CCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.|+++++-... .+++.+ ..-..+..++.+|..+|+++|.+.|.
T Consensus 92 ~~~~vdgIl~DlGvSs~--Qld~~~-----r~~~~~~~~L~~a~~~Lk~gG~l~ii 140 (192)
T d1m6ya2 92 GIEKVDGILMDLGVSTY--QLKGEN-----RELENLKEFLKKAEDLLNPGGRIVVI 140 (192)
T ss_dssp TCSCEEEEEEECSCCHH--HHHTSH-----THHHHHHHHHHHGGGGEEEEEEEEEE
T ss_pred CCCCcceeeeccchhHh--hhhhhh-----ccchhHHHHHHHHHHhcCCCCeeeee
Confidence 34789999999665221 011111 12344778889999999999998555
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.04 E-value=0.19 Score=39.48 Aligned_cols=115 Identities=12% Similarity=0.142 Sum_probs=64.2
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEcccccc-CCCCC-CCC
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHT-MDRHP-TLS 94 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~-L~~~~-~~~ 94 (214)
+.++||.+|-|.=.-|..||++++.+..|++ .|..++.. ..+..|++..--.+ ++++.| |+.+ |.+.. ...
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~s--id~~~~~~---~~a~~~~~~~gl~~~i~l~~G-d~~e~l~~l~~~~~ 129 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLT--MEMNPDYA---AITQQMLNFAGLQDKVTILNG-ASQDLIPQLKKKYD 129 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEE--EESCHHHH---HHHHHHHHHHTCGGGEEEEES-CHHHHGGGHHHHSC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEE--EeccHHHH---HHHHHHHHHcCCCccceeeec-cccccccchhhccc
Confidence 4579999996554555668888765555655 44444333 24667776543222 455544 5544 32210 123
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEE--EecCCCC
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHV--TLRDDHP 155 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~V--Tl~~~~P 155 (214)
...||.|..+.-|.. ......+..+..+|++||-|.+ ++..|.|
T Consensus 130 ~~~~D~ifiD~~~~~-----------------~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~ 175 (214)
T d2cl5a1 130 VDTLDMVFLDHWKDR-----------------YLPDTLLLEKCGLLRKGTVLLADNVIVPGTP 175 (214)
T ss_dssp CCCEEEEEECSCGGG-----------------HHHHHHHHHHTTCEEEEEEEEESCCCCCCCH
T ss_pred ccccceeeecccccc-----------------cccHHHHHHHhCccCCCcEEEEeCcCCCCCh
Confidence 467999988732211 1122245567789999996654 3444444
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.61 E-value=0.31 Score=34.20 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=44.4
Q ss_pred CCeEEEEecCchhH--HHHHHHHhCCCCcEEEeecCChHHHHhcCc-c-HHHHHHHHHhCCCEEEEccccccCCC
Q 041136 19 NQRILLVGEGDFSF--SDCLARAFGSATNMVASSLDSERTLKTKHW-T-SQAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 19 ~~~ILlVGeGnFSF--S~sLa~~~~~~~~l~ATs~ds~~~l~~kY~-~-a~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
.++|++||=|--.. |..|. .++.. ..-.|-++..+.+...++ + ++.-.+.|++.|+.++.+..++.++.
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~-~l~~~-~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~ 92 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFN-AYKPK-DGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVEL 92 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHH-HHCCT-TCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEE
T ss_pred CCeEEEECCcHHHHHHHHHhh-hcccC-CcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEE
Confidence 47999999995544 43333 34321 222355565555655553 2 33456778999999999999988853
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=89.41 E-value=0.72 Score=36.54 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=68.2
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccC-CCCC--C
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTM-DRHP--T 92 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L-~~~~--~ 92 (214)
-.+.++||.+|.+.=-=++.+|+.++....|++...|.+.. .-|.+|++..--.....++.-||... .+-. .
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~-----~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~ 131 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENY-----ELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDE 131 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHH-----HHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCG
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhH-----HHHHHHHHHhccccceeeeehHHHHHHHHHHhcc
Confidence 35678999999776555777888886556777666665432 23666666543222344455555432 2100 0
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
....+||.|.-+-=|.. ...+|+-+..+|++||-|.+-
T Consensus 132 ~~~~~fD~iFiDa~k~~-------------------y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 132 KNHGSYDFIFVDADKDN-------------------YLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp GGTTCBSEEEECSCSTT-------------------HHHHHHHHHHHBCTTCCEEEE
T ss_pred ccCCceeEEEeccchhh-------------------hHHHHHHHHhhcCCCcEEEEc
Confidence 12457999998743311 236677788899999998775
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=89.08 E-value=0.97 Score=36.73 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=76.1
Q ss_pred CCCCeEEE--EecCchhHHHHHHHHhC--CCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 17 TNNQRILL--VGEGDFSFSDCLARAFG--SATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 17 ~~~~~ILl--VGeGnFSFS~sLa~~~~--~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
+++.+||= +|.|.|.. ++++.+. ....+..++.|..+...+ -|..|+. +...+..+.++-+.. .
T Consensus 116 ~~~~~vlDp~~GsG~~l~--~~~~~l~~~~~~~~~~~g~di~~~~~~---~a~~~~~-~~~~~~~~~~~d~~~------~ 183 (328)
T d2f8la1 116 KKNVSILDPACGTANLLT--TVINQLELKGDVDVHASGVDVDDLLIS---LALVGAD-LQRQKMTLLHQDGLA------N 183 (328)
T ss_dssp CSEEEEEETTCTTSHHHH--HHHHHHHTTSSCEEEEEEEESCHHHHH---HHHHHHH-HHTCCCEEEESCTTS------C
T ss_pred CCCCEEEeCCCCcchhHH--HHHHHHHhccCccceEEEecccHHHHH---HHHHHHH-Hhhhhhhhhcccccc------c
Confidence 34556776 56776644 4655432 123455666675444432 2444443 334455555442211 1
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHH----HHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC-cc-cHhh-HH
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTN----LIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN-QW-NVMG-LA 165 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~----~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~-~W-~i~~-lA 165 (214)
....+||.||-|.|-..... .+.... ....+..+=.-|++-|..+|+++|.+.+-+-.+--.. .. .+.+ +.
T Consensus 184 ~~~~~fD~vi~NPPy~~~~~--~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~ 261 (328)
T d2f8la1 184 LLVDPVDVVISDLPVGYYPD--DENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIK 261 (328)
T ss_dssp CCCCCEEEEEEECCCSEESC--HHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHH
T ss_pred cccccccccccCCCCCCCcc--chhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHH
Confidence 33568999999999642210 000000 0000112334589999999999999755433221000 01 1333 33
Q ss_pred HhcCCEEEEEecCCCCCCCC
Q 041136 166 DKLGLVLKEKVEFLKQDFPG 185 (214)
Q Consensus 166 ~~~gl~l~~~~~F~~~~yPg 185 (214)
++ ..+...+.+....|++
T Consensus 262 ~~--~~i~~ii~lp~~~F~~ 279 (328)
T d2f8la1 262 KN--GHIEGIIKLPETLFKS 279 (328)
T ss_dssp HH--EEEEEEEECCGGGSCC
T ss_pred hC--CcEEEEEECCccccCC
Confidence 33 3555556666666654
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=88.76 E-value=0.21 Score=35.46 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=45.0
Q ss_pred CCCCeEEEEecC--chhHHHHHHHHhCCCCcEEEeecCChHHHHhcCc-cH-HHHHHHHHhCCCEEEEccccccCCC
Q 041136 17 TNNQRILLVGEG--DFSFSDCLARAFGSATNMVASSLDSERTLKTKHW-TS-QAHLQSLWSRGCLVLHGVNVHTMDR 89 (214)
Q Consensus 17 ~~~~~ILlVGeG--nFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~-~a-~~ni~~L~~~g~~Vl~~VDAt~L~~ 89 (214)
+..++|++||=| ..-+|.+|++ +| .+ .|-++..+.+...++ +. ..-.+.|++.|+.++.+.+++.+.+
T Consensus 20 ~~p~~v~IiGgG~iG~E~A~~l~~-~g--~~--Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~ 91 (117)
T d1onfa2 20 KESKKIGIVGSGYIAVELINVIKR-LG--ID--SYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKK 91 (117)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHT-TT--CE--EEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHHh-cc--cc--ceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEEEEE
Confidence 345899999999 5566666653 33 34 444554444545553 33 3345678999999999999998864
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=88.19 E-value=0.26 Score=38.54 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=42.5
Q ss_pred CCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCCCCc
Q 041136 18 NNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLSQMK 97 (214)
Q Consensus 18 ~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~~~~ 97 (214)
.+++||=+|=|.=-+|.+++. ++ +.+|+++-.|.. .+. .+.+|++ ++. +..-|++++. .+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~-~g-a~~V~~vDid~~-a~~----~ar~N~~-----~~~-~~~~D~~~l~-------~~ 107 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYL-LG-AESVTAFDIDPD-AIE----TAKRNCG-----GVN-FMVADVSEIS-------GK 107 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHH-TT-BSEEEEEESCHH-HHH----HHHHHCT-----TSE-EEECCGGGCC-------CC
T ss_pred CCCEEEEeCCCCcHHHHHHHH-cC-CCcccccccCHH-HHH----HHHHccc-----ccc-EEEEehhhcC-------Cc
Confidence 478999999776666654444 33 346666655542 222 2445542 233 4455776653 46
Q ss_pred ccEEEEcCCC
Q 041136 98 FDVIIFNFPH 107 (214)
Q Consensus 98 FD~IiFNFPH 107 (214)
||.||.|.|.
T Consensus 108 fD~Vi~NPPf 117 (197)
T d1ne2a_ 108 YDTWIMNPPF 117 (197)
T ss_dssp EEEEEECCCC
T ss_pred ceEEEeCccc
Confidence 9999999995
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.75 E-value=0.59 Score=36.84 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=66.0
Q ss_pred CCCCCeEEEEecCchhHHHHHHHHhCC---CCcEEEeecCChHHHHhcCccHHHHHHHH-----HhCCCEEEEccccccC
Q 041136 16 YTNNQRILLVGEGDFSFSDCLARAFGS---ATNMVASSLDSERTLKTKHWTSQAHLQSL-----WSRGCLVLHGVNVHTM 87 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sLa~~~~~---~~~l~ATs~ds~~~l~~kY~~a~~ni~~L-----~~~g~~Vl~~VDAt~L 87 (214)
-+++++||.||-|-=-+|..|++..++ ....-.+++|..+++.+ .+.+|+... .-.++.+.+ -|+.+.
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~---~a~~~l~~~~~~~~~~~nv~~~~-~d~~~~ 153 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVR---RSKANLNTDDRSMLDSGQLLIVE-GDGRKG 153 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHH---HHHHHHHHHHHHHHHHTSEEEEE-SCGGGC
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHH---HHHHhhhhcchhhcCccEEEEEe-cccccc
Confidence 467899999997777777777776542 11123456787777763 466666543 233455554 476653
Q ss_pred CCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 88 DRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 88 ~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
. ....+||+|+.+..-.-. ...| .+.|++||.+.+.+.
T Consensus 154 ~----~~~~~fD~Iiv~~a~~~~--------------p~~l--------~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 154 Y----PPNAPYNAIHVGAAAPDT--------------PTEL--------INQLASGGRLIVPVG 191 (223)
T ss_dssp C----GGGCSEEEEEECSCBSSC--------------CHHH--------HHTEEEEEEEEEEES
T ss_pred c----ccccceeeEEEEeechhc--------------hHHH--------HHhcCCCcEEEEEEe
Confidence 2 235689999996643211 1222 357899999987765
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=87.32 E-value=2.5 Score=33.30 Aligned_cols=127 Identities=13% Similarity=0.118 Sum_probs=77.4
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
.|+...+||=||=|.=.++.+|++++. ++.+|.+|-.+.+.+..+ ..++.. ..-|.. +. +
T Consensus 78 ~f~~~~~vlDiGGG~G~~~~~l~~~~P---~l~~~v~Dlp~vi~~~~~----------~~ri~~-~~gd~~--~~---~- 137 (244)
T d1fp1d2 78 GFEGISTLVDVGGGSGRNLELIISKYP---LIKGINFDLPQVIENAPP----------LSGIEH-VGGDMF--AS---V- 137 (244)
T ss_dssp TTTTCSEEEEETCTTSHHHHHHHHHCT---TCEEEEEECHHHHTTCCC----------CTTEEE-EECCTT--TC---C-
T ss_pred cccCCcEEEEecCCCcHHHHHHHHHCC---CCeEEEecchhhhhccCC----------CCCeEE-ecCCcc--cc---c-
Confidence 378889999999888888888999984 678899998665543221 112333 233432 11 1
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe--cC--------------------
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL--RD-------------------- 152 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl--~~-------------------- 152 (214)
...|.|++..=-.... + .....+ ++.+.+.|+|+|+|.|.= .+
T Consensus 138 -p~~D~~~l~~vLh~~~----d------e~~~~i----L~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~ 202 (244)
T d1fp1d2 138 -PQGDAMILKAVCHNWS----D------EKCIEF----LSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMF 202 (244)
T ss_dssp -CCEEEEEEESSGGGSC----H------HHHHHH----HHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHH
T ss_pred -ccceEEEEehhhhhCC----H------HHHHHH----HHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 1248877654333331 1 123444 555777789999986651 11
Q ss_pred ----CCCCCcccHhhHHHhcCCEEEEEe
Q 041136 153 ----DHPYNQWNVMGLADKLGLVLKEKV 176 (214)
Q Consensus 153 ----~~Py~~W~i~~lA~~~gl~l~~~~ 176 (214)
|..++.=++.++.+++||...+..
T Consensus 203 ~~~~g~ert~~e~~~ll~~AGF~~v~v~ 230 (244)
T d1fp1d2 203 ITVGGRERTEKQYEKLSKLSGFSKFQVA 230 (244)
T ss_dssp HHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred hhCCCcCCCHHHHHHHHHHcCCCceEEE
Confidence 111223345678888999887754
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=86.90 E-value=0.31 Score=37.61 Aligned_cols=91 Identities=9% Similarity=0.116 Sum_probs=55.3
Q ss_pred EEccccccCCCCCCCCCCcccEEEEcCCCC-CCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCC
Q 041136 79 LHGVNVHTMDRHPTLSQMKFDVIIFNFPHA-GHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYN 157 (214)
Q Consensus 79 l~~VDAt~L~~~~~~~~~~FD~IiFNFPH~-G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~ 157 (214)
+|+-|+.++-+ .+..+++|.||...|-- |........+ ...-.+.+...+..+..+|+++|.+++-..+ ..
T Consensus 7 i~~gDcle~l~--~lpd~sVdliitdPPY~~~~~~~d~~~~---~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~---~~ 78 (256)
T d1g60a_ 7 IHQMNCFDFLD--QVENKSVQLAVIDPPYNLSKADWDSFDS---HNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP---FN 78 (256)
T ss_dssp EEECCHHHHHH--HSCTTCEEEEEECCCCSSCSSGGGCCSS---HHHHHHHHHHHHHHHHHHEEEEEEEEEEECH---HH
T ss_pred EEeccHHHHHh--hCcCCCcCEEEECCCCCCCcCcCcCCCC---HHHHHHHHHHHHHHhhhccccCcccccccCc---hh
Confidence 45556655322 25567899999999963 3211111111 2345678889999999999999998765322 11
Q ss_pred cccHhhHHHhcCCEEEEEec
Q 041136 158 QWNVMGLADKLGLVLKEKVE 177 (214)
Q Consensus 158 ~W~i~~lA~~~gl~l~~~~~ 177 (214)
.=.+.......|+.+...+.
T Consensus 79 ~~~~~~~~~~~g~~~~~~ii 98 (256)
T d1g60a_ 79 CAFICQYLVSKGMIFQNWIT 98 (256)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhhhhhcccceeeeeeE
Confidence 11233444567888776553
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.96 E-value=1.5 Score=33.59 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=61.2
Q ss_pred CCCCCCeEEEEecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHH---------HHh-------CCCEE
Q 041136 15 HYTNNQRILLVGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQS---------LWS-------RGCLV 78 (214)
Q Consensus 15 ~~~~~~~ILlVGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~---------L~~-------~g~~V 78 (214)
.-..+.|||.+|=|+=..|..||+. | .. .|++|--++..+ .+.+.... +.. ....-
T Consensus 42 ~~~~~~rvLd~GCG~G~~a~~LA~~-G--~~--V~gvD~S~~ai~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 113 (229)
T d2bzga1 42 KGKSGLRVFFPLCGKAVEMKWFADR-G--HS--VVGVEISELGIQ---EFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS 113 (229)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHT-T--CE--EEEECSCHHHHH---HHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHhC-C--Cc--EEEEeCCHHHHH---HHHHHhhccccccchhcccccceeeecCCcEE
Confidence 3467789999996666667678874 3 34 477884443321 11111000 000 01122
Q ss_pred EEccccccCCCCCCCCCCcccEEEEc--CCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEec
Q 041136 79 LHGVNVHTMDRHPTLSQMKFDVIIFN--FPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLR 151 (214)
Q Consensus 79 l~~VDAt~L~~~~~~~~~~FD~IiFN--FPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~ 151 (214)
++..|+..+.. .....||.|+-- |-|+. ......+++....+|+|||.+.++..
T Consensus 114 ~~~~d~~~l~~---~~~~~fd~i~~~~~l~~~~----------------~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 114 LYCCSIFDLPR---TNIGKFDMIWDRGALVAIN----------------PGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EEESCGGGGGG---SCCCCEEEEEESSSTTTSC----------------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcchhhccc---cccCceeEEEEEEEEEecc----------------chhhHHHHHHHHhhcCCcceEEEEEc
Confidence 33445555442 345679988742 22322 23456678889999999999766543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=85.65 E-value=0.53 Score=35.64 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=66.5
Q ss_pred CCCCCeEEE--EecCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCC-CEEEEccccccCCCCCC
Q 041136 16 YTNNQRILL--VGEGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRG-CLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 16 ~~~~~~ILl--VGeGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g-~~Vl~~VDAt~L~~~~~ 92 (214)
+-++.++|= -|-|.+++-+ | ..| +. -||..|......+ ...+|++.|.... ...++..|+.+.-+. .
T Consensus 41 ~~~~~~vLDlFaGsG~~glEa-l--SRG-A~--~v~fVE~~~~a~~---~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~-~ 110 (183)
T d2ifta1 41 YIHQSECLDGFAGSGSLGFEA-L--SRQ-AK--KVTFLELDKTVAN---QLKKNLQTLKCSSEQAEVINQSSLDFLKQ-P 110 (183)
T ss_dssp HHTTCEEEETTCTTCHHHHHH-H--HTT-CS--EEEEECSCHHHHH---HHHHHHHHTTCCTTTEEEECSCHHHHTTS-C
T ss_pred hcccceEeecccCccceeeee-e--eec-ce--eeEEeecccchhh---hHhhHHhhhcccccccccccccccccccc-c
Confidence 335566654 4677777652 2 233 22 5666776554442 4678999886533 567777777654332 2
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
....+||.|..+.|.--. ...++|.... ...+|+++|-|.+-+..
T Consensus 111 ~~~~~fDlIFlDPPY~~~-------------~~~~~l~~l~--~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 111 QNQPHFDVVFLDPPFHFN-------------LAEQAISLLC--ENNWLKPNALIYVETEK 155 (183)
T ss_dssp CSSCCEEEEEECCCSSSC-------------HHHHHHHHHH--HTTCEEEEEEEEEEEES
T ss_pred ccCCcccEEEechhHhhh-------------hHHHHHHHHH--HhCCcCCCcEEEEEecC
Confidence 234579999999997321 1233444333 23689999988876543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=85.59 E-value=0.43 Score=36.19 Aligned_cols=108 Identities=11% Similarity=0.107 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCC
Q 041136 15 HYTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPT 92 (214)
Q Consensus 15 ~~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~ 92 (214)
++-++.+||=++ -|.+++. ||. .| +..+ |..|...... ..+.+|++.+...++.|+ .-||.+.-+
T Consensus 40 ~~~~~~~vLDlfaGsG~~gie-als--rG-a~~v--~~VE~~~~a~---~~~k~N~~~~~~~~~~ii-~~d~~~~l~--- 106 (183)
T d2fpoa1 40 PVIVDAQCLDCFAGSGALGLE-ALS--RY-AAGA--TLIEMDRAVS---QQLIKNLATLKAGNARVV-NSNAMSFLA--- 106 (183)
T ss_dssp HHHTTCEEEETTCTTCHHHHH-HHH--TT-CSEE--EEECSCHHHH---HHHHHHHHHTTCCSEEEE-CSCHHHHHS---
T ss_pred cccchhhhhhhhccccceeee-EEe--cC-ccee--EEEEEeechh---hHHHHHHhhccccceeee-eeccccccc---
Confidence 445667887665 6666553 222 22 2344 4456444433 247788888766566554 457775432
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEe
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTL 150 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl 150 (214)
....+||.|+.+.|--.. ...+++.... ...+|+++|.|.|-.
T Consensus 107 ~~~~~fDlIf~DPPY~~~-------------~~~~~l~~l~--~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 107 QKGTPHNIVFVDPPFRRG-------------LLEETINLLE--DNGWLADEALIYVES 149 (183)
T ss_dssp SCCCCEEEEEECCSSSTT-------------THHHHHHHHH--HTTCEEEEEEEEEEE
T ss_pred ccccccCEEEEcCccccc-------------hHHHHHHHHH--HCCCCCCCeEEEEEe
Confidence 245789999999994221 0122333332 246799999887753
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.66 E-value=0.44 Score=34.64 Aligned_cols=122 Identities=11% Similarity=0.103 Sum_probs=68.9
Q ss_pred CCCCCeEEEEecCchhHHHHH-HHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCCC
Q 041136 16 YTNNQRILLVGEGDFSFSDCL-ARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTLS 94 (214)
Q Consensus 16 ~~~~~~ILlVGeGnFSFS~sL-a~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~~ 94 (214)
-+++++||+.|-|..-.+... +++.+ ..+++|+.+.+ .++.+++.|+....+-.-.+....-.-.
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g--~~v~~~~~~~~------------r~~~~k~~Ga~~~~~~~~~~~~~~~~~~ 90 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDE------------KLELAKELGADLVVNPLKEDAAKFMKEK 90 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHH------------HHHHHHHTTCSEEECTTTSCHHHHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcCC--CeEeccCCCHH------------HhhhhhhcCcceecccccchhhhhcccc
Confidence 457899999999998765443 55554 36777754321 2566777888766553222211100001
Q ss_pred CCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecCCCCCCcccHhhHHHhcCCEEEE
Q 041136 95 QMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRDDHPYNQWNVMGLADKLGLVLKE 174 (214)
Q Consensus 95 ~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~~~Py~~W~i~~lA~~~gl~l~~ 174 (214)
...+|.||++- +.. .. +..+-.+|+++|.+.+.=..+.| ..+++..+- ..+..+..
T Consensus 91 ~~~~~~~v~~~---~~~---------------~~----~~~a~~~l~~~G~i~~~g~~~~~-~~~~~~~~~-~~~~~i~g 146 (168)
T d1rjwa2 91 VGGVHAAVVTA---VSK---------------PA----FQSAYNSIRRGGACVLVGLPPEE-MPIPIFDTV-LNGIKIIG 146 (168)
T ss_dssp HSSEEEEEESS---CCH---------------HH----HHHHHHHEEEEEEEEECCCCSSE-EEEEHHHHH-HTTCEEEE
T ss_pred cCCCceEEeec---CCH---------------HH----HHHHHHHhccCCceEecccccCC-CCCCHHHHH-HCCcEEEE
Confidence 23466677652 321 01 34566778999998776333333 346665543 44567766
Q ss_pred E
Q 041136 175 K 175 (214)
Q Consensus 175 ~ 175 (214)
+
T Consensus 147 s 147 (168)
T d1rjwa2 147 S 147 (168)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=83.14 E-value=3.8 Score=30.35 Aligned_cols=112 Identities=21% Similarity=0.181 Sum_probs=61.6
Q ss_pred CCCCCeEEEEe--cCchhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCCCCCCC
Q 041136 16 YTNNQRILLVG--EGDFSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMDRHPTL 93 (214)
Q Consensus 16 ~~~~~~ILlVG--eGnFSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~~~~~~ 93 (214)
-..+.+||=-| .|+| ..++.+.+....++++.-.|... ..- .....++++..... .
T Consensus 17 ~~~~~~IlDp~~G~G~f--l~~~~~~~~~~~~i~g~ei~~~~--~~~------------~~~~~~~~~~~~~~------~ 74 (223)
T d2ih2a1 17 APRGGRVLEPACAHGPF--LRAFREAHGTAYRFVGVEIDPKA--LDL------------PPWAEGILADFLLW------E 74 (223)
T ss_dssp CCTTCEEEEETCTTCHH--HHHHHHHHCSCSEEEEEESCTTT--CCC------------CTTEEEEESCGGGC------C
T ss_pred CCCcCEEEECCCchHHH--HHHHHHhccccceEEeeecCHHH--Hhh------------cccceeeeeehhcc------c
Confidence 34567887655 7765 45577777655566655554321 100 01234444432221 2
Q ss_pred CCCcccEEEEcCCCCCCCCCCCccc--HHHHHH-----------hHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 94 SQMKFDVIIFNFPHAGHSPPLSEQD--TNLIKR-----------HKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 94 ~~~~FD~IiFNFPH~G~~~~~~~~~--~~~i~~-----------n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
...+||.||-|.|............ ...... +..+-..|++.|.++|+++|.+-+-
T Consensus 75 ~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I 143 (223)
T d2ih2a1 75 PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 143 (223)
T ss_dssp CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence 3467999999999865432111110 000001 1124567889999999999998444
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.05 E-value=1.6 Score=34.07 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=63.7
Q ss_pred CCCCCeEEEEecCc-hhHHHHHHHHhCCCCcEEEeecCChHHHHhcCccHHHHHHHHHhCCCEEEEccccccCC-CC-CC
Q 041136 16 YTNNQRILLVGEGD-FSFSDCLARAFGSATNMVASSLDSERTLKTKHWTSQAHLQSLWSRGCLVLHGVNVHTMD-RH-PT 92 (214)
Q Consensus 16 ~~~~~~ILlVGeGn-FSFS~sLa~~~~~~~~l~ATs~ds~~~l~~kY~~a~~ni~~L~~~g~~Vl~~VDAt~L~-~~-~~ 92 (214)
-...++||.||-|- +| ++++|+.++....|++.-.|.+ .. ..|.+|++...-....-++.-||.+.- +. ..
T Consensus 57 ~~~~k~vLEiGt~~GyS-tl~~a~al~~~g~i~tie~~~~--~~---~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~ 130 (219)
T d2avda1 57 LIQAKKALDLGTFTGYS-ALALALALPADGRVVTCEVDAQ--PP---ELGRPLWRQAEAEHKIDLRLKPALETLDELLAA 130 (219)
T ss_dssp HTTCCEEEEECCTTSHH-HHHHHTTSCTTCEEEEEESCSH--HH---HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT
T ss_pred ccCCCeEEEEechhhHH-HHHHHHhCCCCceEEEEeechh--HH---HHHHHHHHhcCccceEEEEEeehhhcchhhhhh
Confidence 45678999999664 45 6778887754455555554443 22 236666665543333333444554421 10 01
Q ss_pred CCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE
Q 041136 93 LSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT 149 (214)
Q Consensus 93 ~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT 149 (214)
.....||.|.-+--+.. ...+|..+..+|++||-|.+-
T Consensus 131 ~~~~~fD~ifiD~dk~~-------------------y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 131 GEAGTFDVAVVDADKEN-------------------CSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp TCTTCEEEEEECSCSTT-------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCccEEEEeCCHHH-------------------HHHHHHHHHHHhcCCcEEEEe
Confidence 23567999998743311 133556677899999998764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=81.82 E-value=0.86 Score=35.93 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=46.0
Q ss_pred EEEccccccCCCCCCCCCCcccEEEEcCCCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEEecC
Q 041136 78 VLHGVNVHTMDRHPTLSQMKFDVIIFNFPHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVTLRD 152 (214)
Q Consensus 78 Vl~~VDAt~L~~~~~~~~~~FD~IiFNFPH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VTl~~ 152 (214)
.++.-|+-++-+ .+..+++|+||...|---......+.. . ...-.+.+...+.-+..+|+++|.|+|...+
T Consensus 14 ~l~~GD~le~l~--~l~~~sVdli~tDPPY~~~~~~~~~~~-~-~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~ 84 (320)
T d1booa_ 14 SMYIGDSLELLE--SFPEESISLVMTSPPFALQRKKEYGNL-E-QHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 84 (320)
T ss_dssp EEEESCHHHHGG--GSCSSCEEEEEECCCCSSSCSCSSCSC-H-HHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEehhHHHHHh--hCccCCCCEEEECCCCcCCCCCCCCCC-C-HHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence 444455554322 256789999999999763321111111 1 1234567888999999999999999887543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.38 E-value=2.7 Score=32.96 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=52.5
Q ss_pred EEEccccccCCCC--CCCCCCcccEEEEcC--CCCCCCCCCCcccHHHHHHhHHHHHHHHHHHHhccCCCCEEEEE-ecC
Q 041136 78 VLHGVNVHTMDRH--PTLSQMKFDVIIFNF--PHAGHSPPLSEQDTNLIKRHKNLLEAFLKNGREMLGEGGEVHVT-LRD 152 (214)
Q Consensus 78 Vl~~VDAt~L~~~--~~~~~~~FD~IiFNF--PH~G~~~~~~~~~~~~i~~n~~LL~~Ff~Sa~~lL~~~G~i~VT-l~~ 152 (214)
-.+..|+++-... .......||+|+-.| -|+. .+++=+..+++.+..+|+|||.+.+. ...
T Consensus 136 ~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~--------------~~~~~~~~~l~~~~~~LkPGG~li~~~~~~ 201 (263)
T d2g72a1 136 RVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS--------------PDLASFQRALDHITTLLRPGGHLLLIGALE 201 (263)
T ss_dssp EEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC--------------SSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred ccccccccCCCccccCCcCcCccCeeeeHHHHHHHc--------------cCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence 3344566643321 123356799998876 2332 13444788889999999999997554 221
Q ss_pred CC------------CCCcccHhhHHHhcCCEEEEE
Q 041136 153 DH------------PYNQWNVMGLADKLGLVLKEK 175 (214)
Q Consensus 153 ~~------------Py~~W~i~~lA~~~gl~l~~~ 175 (214)
.. ..+.=.|.++..++||.+...
T Consensus 202 ~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~ 236 (263)
T d2g72a1 202 ESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 236 (263)
T ss_dssp CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CcccccCCcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 11 124445778899999988763
|