Citrus Sinensis ID: 041151
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 463 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S7E9 | 481 | Glutamate--glyoxylate ami | yes | no | 1.0 | 0.962 | 0.835 | 0.0 | |
| Q9LR30 | 481 | Glutamate--glyoxylate ami | no | no | 0.997 | 0.960 | 0.823 | 0.0 | |
| Q54MJ7 | 534 | Probable alanine aminotra | yes | no | 0.974 | 0.844 | 0.483 | 1e-124 | |
| P52894 | 482 | Alanine aminotransferase | N/A | no | 0.965 | 0.927 | 0.468 | 1e-119 | |
| Q9LDV4 | 540 | Alanine aminotransferase | no | no | 0.961 | 0.824 | 0.459 | 1e-116 | |
| P34106 | 482 | Alanine aminotransferase | N/A | no | 0.965 | 0.927 | 0.485 | 1e-113 | |
| F4I7I0 | 543 | Alanine aminotransferase | no | no | 0.974 | 0.830 | 0.462 | 1e-112 | |
| Q8BGT5 | 522 | Alanine aminotransferase | yes | no | 0.963 | 0.854 | 0.424 | 1e-107 | |
| Q6GM82 | 540 | Alanine aminotransferase | N/A | no | 0.963 | 0.825 | 0.419 | 1e-106 | |
| Q6NYL5 | 549 | Alanine aminotransferase | no | no | 0.963 | 0.812 | 0.439 | 1e-106 |
| >sp|Q9S7E9|GGT2_ARATH Glutamate--glyoxylate aminotransferase 2 OS=Arabidopsis thaliana GN=GGAT2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/481 (83%), Positives = 436/481 (90%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
M+ KALDYES+NENVK QYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MSLKALDYESLNENVKNCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVV+LCQAPFLLDDPNVG++FPADAIARAKHYLSLTSGGLGAYSDSRG+PGVRKEVAEFI
Sbjct: 61 QVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTT--------- 165
ERRDGYPSDPELIFLTDGASKGVMQ LNCVIRG+ DG+++ L+ T
Sbjct: 121 ERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISLLGGTLV 180
Query: 166 ---WKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ + L +N+L+QSVAQARS+GITVRAMVIINPGNPTGQCLSEAN+REILRFC
Sbjct: 181 PYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILRFCC 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
E LVLLGDEVYQQNIYQDERPF+SSKKVLMDMG P SKEVQL+SFHTVSKGYWGECGQR
Sbjct: 241 DERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPP+TV+EIYK+ASIALSPNV AQIFMGLMV+P KPGDISY+QFVRESKGIL
Sbjct: 301 GGYFEMTNIPPRTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYDQFVRESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESLRRRARMMTDGFNSC+NVVCNFTEGAMYSFPQI+LP KAI+AAK+AGKVPDVFYCL+L
Sbjct: 361 ESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPSKAIQAAKQAGKVPDVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEE+MP IM+SFKKFNDEFM QY D GYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQYADNFGYSR 480
Query: 463 M 463
M
Sbjct: 481 M 481
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Catalyzes the Glu:glyoxylate aminotransferase (GGT), Ala:glyoxylate aminotransferase (AGT), Ala:2-oxoglutarate aminotransferase (AKT) and Glu:pyruvate aminotransferase (GPT) reactions in peroxisomes. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: - |
| >sp|Q9LR30|GGT1_ARATH Glutamate--glyoxylate aminotransferase 1 OS=Arabidopsis thaliana GN=GGAT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/482 (82%), Positives = 437/482 (90%), Gaps = 20/482 (4%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
MA KALDY+++NENVKK QYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MALKALDYDTLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVVALCQAPFLLDDPNVG++FPADAIARAKHYLSLTSGGLGAYSDSRG+PGVRKEVAEFI
Sbjct: 61 QVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTW-------- 166
+RRDGYPSDPELIFLTDGASKGVMQ LNCVIRG GDG+++ L+ T
Sbjct: 121 QRRDGYPSDPELIFLTDGASKGVMQILNCVIRGNGDGILVPVPQYPLYSATISLLGGTLV 180
Query: 167 -----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221
+ + G+ + N L+QSVAQARS+GITVRAMVIINPGNPTGQCLSEAN+REIL+FC
Sbjct: 181 PYYLDESENWGLDVAN-LRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILKFC 239
Query: 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQ 281
Y E LVLLGDEVYQQNIYQDERPF+SSKKVLM+MG PFSKEVQLVSFHTVSKGYWGECGQ
Sbjct: 240 YNEKLVLLGDEVYQQNIYQDERPFISSKKVLMEMGSPFSKEVQLVSFHTVSKGYWGECGQ 299
Query: 282 RGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341
RGGYFEMTN+PP+ V+EIYK+ASIALSPNV AQIFMGLMVNP KPGDISY+QF RESKGI
Sbjct: 300 RGGYFEMTNLPPRVVEEIYKVASIALSPNVSAQIFMGLMVNPPKPGDISYDQFARESKGI 359
Query: 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLR 401
LESLRRRAR+MTDGFNSC+NVVCNFTEGAMYSFPQIRLP A++AAK+AGKVPDVFYCL+
Sbjct: 360 LESLRRRARLMTDGFNSCKNVVCNFTEGAMYSFPQIRLPTGALQAAKQAGKVPDVFYCLK 419
Query: 402 LLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYS 461
LLEATGISTVPGSGFGQKEG+FHLRTTILPAE++MP IM+SFKKFNDEFM QY++ GYS
Sbjct: 420 LLEATGISTVPGSGFGQKEGVFHLRTTILPAEDEMPEIMDSFKKFNDEFMTQYDNNFGYS 479
Query: 462 RM 463
+M
Sbjct: 480 KM 481
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Catalyzes the glutamate:glyoxylate (GGT or GGAT), alanine:glyoxylate (AGT), alanine:2-oxoglutarate (AKT) and glutamate:pyruvate (GPT) aminotransferase reactions in peroxisomes. Required for abscisic acid (ABA)- and stress-mediated responses in an H(2)O(2)-dependent manner. Function as a photorespiratory aminotransferase that modulates amino acid content during photorespiration (GGAT activity); promotes serine, glycine and citrulline metabolism in response to light. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q54MJ7|ALAM_DICDI Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/484 (48%), Positives = 327/484 (67%), Gaps = 33/484 (6%)
Query: 4 KALDYESMNENVKKVQYAVRGELYLRAS----ELQK---EGKK------IIFTNVGNPHA 50
K++ +++ +NV+ QYAVRGEL +RA +LQK EG K I++ N+GNP
Sbjct: 52 KSMTIDNICQNVRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGNPQQ 111
Query: 51 LGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIP 110
L Q+PLT+ RQVV+L + P LLD+P V ++PAD I+RAK L + GAYS+S+GI
Sbjct: 112 LKQKPLTYFRQVVSLVECPDLLDNPYVEKIYPADVISRAKEILGSINNTTGAYSNSQGIG 171
Query: 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHT 164
V + VA+FIERRDG+ SDP IFLTDGAS GV + L +I+ DG+++ L+
Sbjct: 172 LVLRSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYPLYSA 231
Query: 165 T---WKRQQIGVLI---------INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212
T + Q+G L+ I+ L+ S A SKGI RA+VIINPGNPTGQCL A
Sbjct: 232 TIELYNGSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQCLDRA 291
Query: 213 NLREILRFCYQENLVLLGDEVYQQNIY-QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV 271
N+ EI++FC ++N+VLL DEVYQ+N+Y ++ +PF+S KKV+ DMG ++ ++++VSFH+V
Sbjct: 292 NMEEIVKFCLEKNVVLLADEVYQENVYVKESKPFISFKKVVKDMGGDYA-DLEMVSFHSV 350
Query: 272 SKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISY 331
SKG+ GECG+RGGY E+ + EIYK+ASI L PNV Q+ + LMV P G+ S+
Sbjct: 351 SKGFVGECGKRGGYMELNGVTQDVKAEIYKLASIGLCPNVIGQLVVDLMVRPPVAGEQSH 410
Query: 332 EQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAG 391
+ +++E I ESL++RA ++T+ N+ V CN +EGAMY+FPQIRLP KA+E A G
Sbjct: 411 DLYLKERDNIYESLKKRANLLTNALNNLEGVTCNPSEGAMYAFPQIRLPAKAVEYANSIG 470
Query: 392 KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451
K PD +YC++LLEATGI VPGSGFGQK+G +H RTT LP+EE + + + F+ FM
Sbjct: 471 KAPDAYYCIQLLEATGICVVPGSGFGQKDGTWHFRTTFLPSEEAIEGVCKRIADFHQSFM 530
Query: 452 EQYE 455
+Y+
Sbjct: 531 NKYK 534
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Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|P52894|ALA2_HORVU Alanine aminotransferase 2 OS=Hordeum vulgare PE=1 SV=1 | Back alignment and function description |
|---|
Score = 430 bits (1105), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/476 (46%), Positives = 306/476 (64%), Gaps = 29/476 (6%)
Query: 9 ESMNENVKKVQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQRPLTFP 59
+++N V K +YAVRGE+ + A LQ++ K +I++ N+GNP +LGQ+P+TF
Sbjct: 8 DNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFF 67
Query: 60 RQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAE 118
R+V+ALC P LL + +F AD+I+RAK L++ G GAYS S+GI G+R +A
Sbjct: 68 REVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIKGLRDAIAS 127
Query: 119 FIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTT------- 165
I RDG+P++ + IFLTDGAS GV + +IR E DG+++ L+ +
Sbjct: 128 GIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGA 187
Query: 166 ----WKRQQIGV-LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220
+ + G L +D+++ + ARS+GI VRA+V+INPGNPTGQ L+E N +I++F
Sbjct: 188 LVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKF 247
Query: 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280
C E LVLL DEVYQ+NIY D + F S KK++ +G +++ LVS+ +VSKGY+GECG
Sbjct: 248 CKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYG-EEDLPLVSYQSVSKGYYGECG 306
Query: 281 QRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG 340
+RGGYFE+T ++IYKIAS+ L N+ QI L++NP K D SY + E G
Sbjct: 307 KRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDG 366
Query: 341 ILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400
IL SL RRA+ + FN + CN EGAMY FPQI LP KAIEAAK A K PD FY L
Sbjct: 367 ILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYAL 426
Query: 401 RLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 456
RLLE+TGI VPGSGFGQ G +H R TILP E+ +PA++ F F++ FM +Y D
Sbjct: 427 RLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 482
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Transfer of C3 units between the cytosol of mesophyll and bundle sheath cells to maintain a nitrogen-carbon balance in the C4-dicarboxylic pathway. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q9LDV4|ALAT2_ARATH Alanine aminotransferase 2, mitochondrial OS=Arabidopsis thaliana GN=ALAAT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/488 (45%), Positives = 301/488 (61%), Gaps = 43/488 (8%)
Query: 3 PKALDYESMNENVKKVQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQ 53
P LD S+N V K +YAVRGE+ A +LQ++ K +II+ N+GNP +LGQ
Sbjct: 62 PVTLD--SINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQSLGQ 119
Query: 54 RPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGV 112
P+ F R+V+ALC LLD+ +F D+I RA L G GAYS S+GI G+
Sbjct: 120 LPIKFFREVLALCDHASLLDESETHGLFSTDSIDRAWRILDHIPGRATGAYSHSQGIKGL 179
Query: 113 RKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV------------L 160
R +A IE RDG+P+DP IFLTDGAS V + ++ E DG++ +
Sbjct: 180 RDVIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLLSSEKDGILSPIPQYPLYSASI 239
Query: 161 LFH------------TTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208
H T W L I+DL++ + +ARSKGI+VRA+V+INPGNPTGQ
Sbjct: 240 ALHGGSLVPYYLDEATGWG------LEISDLKKQLEEARSKGISVRALVVINPGNPTGQV 293
Query: 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSF 268
L+E N R+I+ FC QE LVLL DEVYQ+N+Y ++ F S KKV +G K++ LVSF
Sbjct: 294 LAEENQRDIVNFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSLGYG-EKDISLVSF 352
Query: 269 HTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGD 328
+VSKGY+GECG+RGGY E+T ++IYK+AS+ L N+ QI L+++P KPGD
Sbjct: 353 QSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLVMSPPKPGD 412
Query: 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388
SY+ ++ E GIL S+ +RA+ + D NS V CN EGAMY FP+I LP KAIEAA+
Sbjct: 413 DSYDSYMAERDGILSSMAKRAKTLEDALNSLEGVTCNRAEGAMYLFPRINLPQKAIEAAE 472
Query: 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448
PD FYC RLL ATG+ VPGSGFGQ G +H R TILP E+ +PAI+ +F+
Sbjct: 473 AEKTAPDAFYCKRLLNATGVVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVNRLTEFHK 532
Query: 449 EFMEQYED 456
FM+++ +
Sbjct: 533 SFMDEFRN 540
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|P34106|ALA2_PANMI Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 231/476 (48%), Positives = 309/476 (64%), Gaps = 29/476 (6%)
Query: 9 ESMNENVKKVQYAVRGELYLRASELQKEG---------KKIIFTNVGNPHALGQRPLTFP 59
E++N V K +YAVRGE+ + A LQ++ +I++ N+GNP +LGQ+P+TF
Sbjct: 8 ENLNPKVLKCEYAVRGEIVIHAQHLQQQLQTQPGSLPFDEILYCNIGNPQSLGQQPVTFF 67
Query: 60 RQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAE 118
R+V+ALC P LL+ +F ADAI+RAK LS G GAYS S+GI G+R +A
Sbjct: 68 REVLALCDHPCLLEKEETKSLFSADAISRAKQILSTIPGRATGAYSHSQGIKGLRDAIAA 127
Query: 119 FIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTT------- 165
I RDG+P++ + IF+TDGAS GV + +IR E DG++ L+ +
Sbjct: 128 GIASRDGFPANADDIFVTDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSASIALHGGT 187
Query: 166 ----WKRQQIGV-LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220
+ ++ G L I+DL++ + ARSKGI VRA+V+INPGNPTGQ L+E N +I+RF
Sbjct: 188 LVPYYLDEKTGWGLEISDLKKQLEDARSKGIDVRALVVINPGNPTGQVLAEDNQCDIVRF 247
Query: 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280
C E LVLL DEVYQ+NIY D++ F S KK+ +G ++ LVSF +VSKGY+GECG
Sbjct: 248 CKNEGLVLLADEVYQENIYVDDKKFNSFKKIARSVGYG-EDDLPLVSFQSVSKGYYGECG 306
Query: 281 QRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG 340
+RGGY E+T ++IYKIAS+ L N+ QI L++NP K GD SY + E G
Sbjct: 307 KRGGYMEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKVGDESYAAYKAEKDG 366
Query: 341 ILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400
IL+SL RRA+ + D FN+ + CN EGAMY FPQI LP KAIEAAK A K PD FY L
Sbjct: 367 ILQSLARRAKALEDAFNNLEGISCNKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFYAL 426
Query: 401 RLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 456
RLLE+TGI VPGSGFGQ G +H+R TILP E+ +PA++ FK F++ FM +Y D
Sbjct: 427 RLLESTGIVVVPGSGFGQVPGTWHIRCTILPQEDKIPAVITRFKAFHEAFMAEYRD 482
|
Transfer of C3 units between the cytosol of mesophyll and bundle sheath cells to maintain a nitrogen-carbon balance in the C4-dicarboxylic pathway. Panicum miliaceum (taxid: 4540) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|F4I7I0|ALAT1_ARATH Alanine aminotransferase 1, mitochondrial OS=Arabidopsis thaliana GN=ALAAT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/482 (46%), Positives = 302/482 (62%), Gaps = 31/482 (6%)
Query: 3 PKALDYESMNENVKKVQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQ 53
P LD ++N V K +YAVRGE+ A +LQ++ K +II+ N+GNP +LGQ
Sbjct: 65 PVTLD--TINPKVIKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEIIYCNIGNPQSLGQ 122
Query: 54 RPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGV 112
+P+TF R+V+ALC LLD+ +F +D+I RA L G GAYS S+GI G+
Sbjct: 123 QPITFFREVLALCSYTALLDESATHGLFSSDSIERAWKILDQIPGRATGAYSHSQGIKGL 182
Query: 113 RKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----FHTTWK 167
R +A+ IE RDG+P+DP IF+TDGAS GV + +I E DG++ ++
Sbjct: 183 RDAIADGIEARDGFPADPNDIFMTDGASPGVHMMMQLLITSEKDGILCPIPQYPLYSASI 242
Query: 168 RQQIGVLI-------------INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214
G L+ I++L++ + ARSKGITVRA+ +INPGNPTGQ LSE N
Sbjct: 243 ALHGGTLVPYYLDEASGWGLEISELKKQLEDARSKGITVRALAVINPGNPTGQVLSEENQ 302
Query: 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKG 274
R++++FC QE LVLL DEVYQ+N+Y ++ F S KKV MG K++ LVSF +VSKG
Sbjct: 303 RDVVKFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYG-EKDLALVSFQSVSKG 361
Query: 275 YWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQF 334
Y+GECG+RGGY E+T ++IYK+AS+ L N+ QI L+++P KPGD SYE +
Sbjct: 362 YYGECGKRGGYMEVTGFTSDVREQIYKMASVNLCSNISGQILASLIMSPPKPGDDSYESY 421
Query: 335 VRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP 394
+ E GIL SL RRA+ + + N V CN EGAMY FP + LP KAI AA+ P
Sbjct: 422 IAEKDGILSSLARRAKTLEEALNKLEGVTCNRAEGAMYLFPCLHLPQKAIAAAEAEKTAP 481
Query: 395 DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
D FYC RLL+ATGI VPGSGF Q G +H R TILP E+ +PAI++ F+ FM+++
Sbjct: 482 DNFYCKRLLKATGIVVVPGSGFRQVPGTWHFRCTILPQEDKIPAIVDRLTAFHQSFMDEF 541
Query: 455 ED 456
D
Sbjct: 542 RD 543
|
Major alanine aminotransferase in roots. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: - |
| >sp|Q8BGT5|ALAT2_MOUSE Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/481 (42%), Positives = 297/481 (61%), Gaps = 35/481 (7%)
Query: 4 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRP 55
+ L ESMN VK V+YAVRG + L+A E++ E ++ +I N+G+ HA+GQ+P
Sbjct: 46 RILTLESMNPQVKAVEYAVRGPIVLKAGEIEMELQRGIKKPFTEVIRANIGDAHAMGQQP 105
Query: 56 LTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRK 114
+TF RQV+ALC P LL+ P+ FP DA RA+ L G LG+YS S+G+ +R+
Sbjct: 106 ITFLRQVMALCTYPNLLNSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIRE 161
Query: 115 EVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD---GVVL------LFHTT 165
+VA FI RRDG P+DP+ I+LT GAS G+ L ++ G G GV++ L+
Sbjct: 162 DVAAFITRRDGVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMIPIPQYPLYSAV 221
Query: 166 ------------WKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213
+ L +++L++++ QA+ + + IINPGNPTGQ S
Sbjct: 222 ISELDAVQVNYYLDEENCWALNVDELRRALRQAKDH-CDPKVLCIINPGNPTGQVQSRKC 280
Query: 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSK 273
+ +++ F ++E L LL DEVYQ N+Y + F S KKVL MG +S V+L SFH+ SK
Sbjct: 281 IEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYQMGHEYSSNVELASFHSTSK 340
Query: 274 GYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQ 333
GY GECG RGGY E+ N+ P+ ++ K+ S+ L P V Q M ++VNP +PG+ S+EQ
Sbjct: 341 GYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPEPGEESFEQ 400
Query: 334 FVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV 393
F RE + +L +L ++A++ D FN + CN +GAMY+FP+I +P KA+EAA+
Sbjct: 401 FSREKEFVLGNLAKKAKLTEDLFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQSHKMA 460
Query: 394 PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQ 453
PD+FYC++LLE TGI VPGSGFGQ+EG +H R TILP + + ++ K F+ +F+EQ
Sbjct: 461 PDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVDKLKTVLHKVKDFHLKFLEQ 520
Query: 454 Y 454
Y
Sbjct: 521 Y 521
|
Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q6GM82|ALAT2_XENLA Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/482 (41%), Positives = 301/482 (62%), Gaps = 36/482 (7%)
Query: 4 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRP 55
+ L +SMN ++KV+YAVRG + +RA EL+KE ++ +I N+G+ HA+GQ+P
Sbjct: 63 RILTLDSMNPCIQKVEYAVRGPIVIRAVELEKELQQGVKKPFTEVIKANIGDAHAMGQKP 122
Query: 56 LTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRK 114
+TF RQV A+C P L++D FP D +A L G +GAYS S+GI +R+
Sbjct: 123 VTFLRQVSAICLYPELMNDNK----FPEDVKQKAARILQACGGHSIGAYSASQGIEVIRQ 178
Query: 115 EVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEGD---GVVL------LFHT 164
+VA++IERRDG SDP I+L+ GAS ++ L ++ G+G GV++ L+
Sbjct: 179 DVAKYIERRDGGILSDPNNIYLSTGASDSIVTMLKLLVSGQGKSRTGVMIPIPQYPLYSA 238
Query: 165 TW------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212
+ L IN+L++++A+AR K + + IINPGNPTGQ S
Sbjct: 239 ALAELDAVQVNYYLDEENCWALDINELRRALAEAR-KHCDPKVLCIINPGNPTGQVQSRK 297
Query: 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272
+ +++RF +ENL L+ DEVYQ N+Y F S KKVL +MG +S+ ++L SFH+ S
Sbjct: 298 CIEDVIRFAAEENLFLMADEVYQDNVYAKGCAFHSFKKVLFEMGPKYSETLELASFHSTS 357
Query: 273 KGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYE 332
KGY GECG RGGY E+ N+ P ++ K+ S+ L P VP Q+ + ++VNP KPG+ SY+
Sbjct: 358 KGYMGECGFRGGYMEVINMDPAVKQQLTKLVSVRLCPPVPGQVLLDVIVNPPKPGEPSYK 417
Query: 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392
QF+ E + +L +L +AR+ + N + CN +GAMYSFP+I +P KAI+ A+ G+
Sbjct: 418 QFISEKQAVLNNLAEKARLTEEILNQAPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQ 477
Query: 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452
PD+F+C++LLE TGI VPGSGFGQ+EG H R TILP + + +++E K F+ +FM+
Sbjct: 478 APDMFFCMKLLEETGICVVPGSGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFMD 537
Query: 453 QY 454
+Y
Sbjct: 538 EY 539
|
Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q6NYL5|ALAT2_DANRE Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2 | Back alignment and function description |
|---|
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 212/482 (43%), Positives = 297/482 (61%), Gaps = 36/482 (7%)
Query: 4 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRP 55
K L ++MN NVKKV YAVRG + RA +++KE K+ +I N+G+ HA+GQRP
Sbjct: 72 KVLTVDTMNANVKKVDYAVRGPIVQRAVQIEKELKEGVKKPFDEVIKANIGDAHAMGQRP 131
Query: 56 LTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRK 114
+TF RQV+ALC P LLDD FP DA RA+ L G +GAY+ S+GI VR+
Sbjct: 132 ITFFRQVMALCTYPQLLDDNK----FPEDAKNRARRILQSCGGNSIGAYTTSQGIDCVRQ 187
Query: 115 EVAEFIERRD-GYPSDPELIFLTDGASKGVMQTLNCVIRGEG---DGVVL------LFHT 164
+VA++IERRD G PSDP+ I+LT GAS G++ L + GEG GV++ L+
Sbjct: 188 DVAKYIERRDGGIPSDPDNIYLTTGASDGIVTILKLLTAGEGLTRTGVMISIPQYPLYSA 247
Query: 165 T------------WKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212
+ ++ L I++LQ+S+ AR K R + IINPGNPTGQ S
Sbjct: 248 SIAELGAVQINYYLNEEKCWSLDISELQRSLQAAR-KHCNPRVLCIINPGNPTGQVQSRQ 306
Query: 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272
+ ++++F +ENL L+ DEVYQ N+Y F S KKVL +MG +SK+V+L SFH+ S
Sbjct: 307 CIEDVIQFAAKENLFLMADEVYQDNVYAKGCEFHSFKKVLFEMGPEYSKKVELASFHSTS 366
Query: 273 KGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYE 332
K Y GECG RGGY E+ N+ ++ K+ S+ L P P Q M L+VNP +PG+ S++
Sbjct: 367 KCYMGECGFRGGYMEVINMDADVKAQLTKLVSVRLCPPAPGQALMDLVVNPPQPGEPSHQ 426
Query: 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392
F++E +L +L +A++ N+ + CN +GAMYSFP+I LP +AI AK G+
Sbjct: 427 TFMQERTAVLSALAEKAKLTEQILNTVPGISCNPVQGAMYSFPRITLPERAISEAKAKGQ 486
Query: 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452
PD+FYC++LLE TGI VPGSGFGQ+EG +H R TILP + + ++ K F+ F +
Sbjct: 487 APDMFYCMKLLEETGICLVPGSGFGQREGTYHFRMTILPPTDKLKLMLNKLKDFHQRFTQ 546
Query: 453 QY 454
QY
Sbjct: 547 QY 548
|
Catalyzes the reversible transamination between alanine and 2-oxoglutarate to form pyruvate and glutamate. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 463 | ||||||
| 224110900 | 481 | predicted protein [Populus trichocarpa] | 1.0 | 0.962 | 0.837 | 0.0 | |
| 224102443 | 481 | predicted protein [Populus trichocarpa] | 1.0 | 0.962 | 0.841 | 0.0 | |
| 225470587 | 481 | PREDICTED: alanine aminotransferase 2 is | 1.0 | 0.962 | 0.835 | 0.0 | |
| 71842524 | 484 | AlaT1 [Vitis vinifera] | 1.0 | 0.956 | 0.835 | 0.0 | |
| 359495900 | 487 | PREDICTED: alanine aminotransferase 2 is | 1.0 | 0.950 | 0.833 | 0.0 | |
| 147779937 | 481 | hypothetical protein VITISV_023686 [Viti | 1.0 | 0.962 | 0.833 | 0.0 | |
| 15223186 | 481 | alanine-2-oxoglutarate aminotransferase | 1.0 | 0.962 | 0.835 | 0.0 | |
| 222424303 | 481 | AT1G70580 [Arabidopsis thaliana] | 1.0 | 0.962 | 0.833 | 0.0 | |
| 297850792 | 481 | alanine-2-oxoglutarate aminotransferase | 1.0 | 0.962 | 0.829 | 0.0 | |
| 21537112 | 481 | putative alanine aminotransferase [Arabi | 1.0 | 0.962 | 0.831 | 0.0 |
| >gi|224110900|ref|XP_002315675.1| predicted protein [Populus trichocarpa] gi|222864715|gb|EEF01846.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/481 (83%), Positives = 440/481 (91%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
MAP+ALDYES+NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MAPRALDYESLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVVALCQAPFLLDDPNVG++FPADAIA+AKHYL++T+GGLGAYSDSRG+PGVRKEVA+FI
Sbjct: 61 QVVALCQAPFLLDDPNVGLLFPADAIAKAKHYLAMTTGGLGAYSDSRGMPGVRKEVADFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------------------LF 162
ERRDGYPSDPELIFLTDGASKGVMQ L+ +IRGE DGV++ L
Sbjct: 121 ERRDGYPSDPELIFLTDGASKGVMQILSTIIRGESDGVLVPVPQYPLYSAAISLFGGSLV 180
Query: 163 HTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ + L +NDL+QSVAQAR KGITV+AMVIINPGNPTGQCLSEANLREILRFCY
Sbjct: 181 PYYLEETENWGLDVNDLRQSVAQARYKGITVKAMVIINPGNPTGQCLSEANLREILRFCY 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
QENL LLGDEVYQQNIYQDERPF+SS+KVLM MG P SKEVQLVSFHTVSKGYWGECGQR
Sbjct: 241 QENLALLGDEVYQQNIYQDERPFISSRKVLMGMGPPISKEVQLVSFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPPKTVDEIYK+AS++LSPNVPAQIFMGLMVNPLKPG+ISYEQF+RESKGI+
Sbjct: 301 GGYFEMTNIPPKTVDEIYKVASVSLSPNVPAQIFMGLMVNPLKPGNISYEQFIRESKGII 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESLRRRARMMTDGFNSC+NV+CNFTEGAMYSFPQIRLPPKAIEAAK+AGKVPDVFYCL+L
Sbjct: 361 ESLRRRARMMTDGFNSCKNVICNFTEGAMYSFPQIRLPPKAIEAAKKAGKVPDVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEE+MP IM SFKKFN+EFMEQY+D GYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMASFKKFNNEFMEQYDDRSGYSR 480
Query: 463 M 463
+
Sbjct: 481 L 481
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224102443|ref|XP_002312679.1| predicted protein [Populus trichocarpa] gi|222852499|gb|EEE90046.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/481 (84%), Positives = 438/481 (91%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
MAP+ALDYES+NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MAPRALDYESLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVVALCQAPFLLDDPNVG+ FPADAIA+AKHYL++T GGLGAY+DSRG+PGVRKEVA+FI
Sbjct: 61 QVVALCQAPFLLDDPNVGLFFPADAIAKAKHYLAMTIGGLGAYTDSRGMPGVRKEVADFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL-------------LFHTTW- 166
ERRDGYPSDPELIFLTDGASKGVMQ LN +IRGE DG+++ LF +
Sbjct: 121 ERRDGYPSDPELIFLTDGASKGVMQILNTIIRGESDGILVPVPQYPLYSAAISLFGGSLV 180
Query: 167 ----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ L +NDL+QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL FCY
Sbjct: 181 PYFLEETANWGLDVNDLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILHFCY 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
QENLVLLGDEVYQQNIYQDERPF+S++KVLM MG P SKEVQL+SFHTVSKGYWGECGQR
Sbjct: 241 QENLVLLGDEVYQQNIYQDERPFISARKVLMGMGPPVSKEVQLISFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPPK VDEIYK+AS++LSPNVPAQIFMGLMVNP KPGDISYEQF+RESKGIL
Sbjct: 301 GGYFEMTNIPPKAVDEIYKVASVSLSPNVPAQIFMGLMVNPPKPGDISYEQFIRESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESLRRRARMMTDGFNSCRNV+CNFTEGAMYSFPQIRLPPKAI+AAK AGKVPDVFYCL+L
Sbjct: 361 ESLRRRARMMTDGFNSCRNVICNFTEGAMYSFPQIRLPPKAIDAAKMAGKVPDVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEEDMP IM+SFKKFNDEFMEQYE + GYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPEIMDSFKKFNDEFMEQYEGHGGYSR 480
Query: 463 M 463
+
Sbjct: 481 L 481
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470587|ref|XP_002273994.1| PREDICTED: alanine aminotransferase 2 isoform 1 [Vitis vinifera] gi|296083415|emb|CBI23368.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/481 (83%), Positives = 434/481 (90%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
M+ K LDYE++NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MSHKGLDYETLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVVALCQAPFLLDDPNVG+VFPADAIARAKHYLSLTSGGLGAYSDSRG+PG+RKEVAEFI
Sbjct: 61 QVVALCQAPFLLDDPNVGLVFPADAIARAKHYLSLTSGGLGAYSDSRGLPGIRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------------------LF 162
RRDGYPSDPELIFLTDGASKGVMQ LN +IRGE DG+++ L
Sbjct: 121 GRRDGYPSDPELIFLTDGASKGVMQILNTIIRGERDGILVPVPQYPLYSAAISLFGGSLV 180
Query: 163 HTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ L +N+L SVA ARSKGITVRAMVIINPGNPTGQCLSEANL+EIL FCY
Sbjct: 181 PYYLEETANWGLDVNNLHSSVAAARSKGITVRAMVIINPGNPTGQCLSEANLKEILHFCY 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
QENLVLLGDEVYQQNIYQDERPF+S++KVLMDMG P SKE+QLVSFHTVSKGYWGECGQR
Sbjct: 241 QENLVLLGDEVYQQNIYQDERPFISARKVLMDMGPPISKELQLVSFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPP+TVDEIYK+ASI+LSPNVP QIF+G+MVNP PGDISY QF+RESKGIL
Sbjct: 301 GGYFEMTNIPPQTVDEIYKVASISLSPNVPGQIFLGVMVNPPTPGDISYLQFMRESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESL+RRA++MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK+AGKV DVFYCL+L
Sbjct: 361 ESLKRRAQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKKAGKVADVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED+RGYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDHRGYSR 480
Query: 463 M 463
M
Sbjct: 481 M 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|71842524|gb|AAZ43369.1| AlaT1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/481 (83%), Positives = 434/481 (90%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
M+ K LDYE++NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MSHKGLDYETLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVVALCQAPFLLDDPNVG+VFPADAIARAKHYLSLTSGGLGAYSDSRG+PG+RKEVAEFI
Sbjct: 61 QVVALCQAPFLLDDPNVGLVFPADAIARAKHYLSLTSGGLGAYSDSRGLPGIRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------------------LF 162
RRDGYPSDPELIFLTDGASKGVMQ LN +IRGE DG+++ L
Sbjct: 121 GRRDGYPSDPELIFLTDGASKGVMQILNTIIRGERDGILVPVPQYPLYSAAISLFGGSLV 180
Query: 163 HTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ L +N+L SVA ARSKGITVRAMVIINPGNPTGQCLSEANL+EIL FCY
Sbjct: 181 PYYLEETANWGLDVNNLHSSVAAARSKGITVRAMVIINPGNPTGQCLSEANLKEILHFCY 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
QENLVLLGDEVYQQNIYQDERPF+S++KVLMDMG P SKE+QLVSFHTVSKGYWGECGQR
Sbjct: 241 QENLVLLGDEVYQQNIYQDERPFISARKVLMDMGPPISKELQLVSFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPP+TVDEIYK+ASI+LSPNVP QIF+G+MVNP PGDISY QF+RESKGIL
Sbjct: 301 GGYFEMTNIPPQTVDEIYKVASISLSPNVPGQIFLGVMVNPPTPGDISYLQFMRESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESLRRRA++MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK+AGKV DVFYCL+L
Sbjct: 361 ESLRRRAQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKKAGKVADVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEE+MPAIMESFKKFNDEFMEQYED+RGYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPAIMESFKKFNDEFMEQYEDHRGYSR 480
Query: 463 M 463
M
Sbjct: 481 M 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495900|ref|XP_003635112.1| PREDICTED: alanine aminotransferase 2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/481 (83%), Positives = 434/481 (90%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
M+ K LDYE++NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MSHKGLDYETLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVVALCQAPFLLDDPNVG+VFPADAIARAKHYLSLTSGGLGAYSDSRG+PG+RKEVAEFI
Sbjct: 61 QVVALCQAPFLLDDPNVGLVFPADAIARAKHYLSLTSGGLGAYSDSRGLPGIRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------------------LF 162
RRDGYPSDPELIFLTDGASKGVMQ LN +IRGE DG+++ L
Sbjct: 121 GRRDGYPSDPELIFLTDGASKGVMQILNTIIRGERDGILVPVPQYPLYSAAISLFGGSLV 180
Query: 163 HTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ L +N+L SVA ARSKGITVRAMVIINPGNPTGQCLSEANL+EIL FCY
Sbjct: 181 PYYLEETANWGLDVNNLHSSVAAARSKGITVRAMVIINPGNPTGQCLSEANLKEILHFCY 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
QENLVLLGDEVYQQNIYQDERPF+S++KVLMDMG P SKE+QLVSFHTVSKGYWGECGQR
Sbjct: 241 QENLVLLGDEVYQQNIYQDERPFISARKVLMDMGPPISKELQLVSFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPP+TVDEIYK+ASI+LSPNVP QIF+G+MVNP PGDISY QF+RESKGIL
Sbjct: 301 GGYFEMTNIPPQTVDEIYKVASISLSPNVPGQIFLGVMVNPPTPGDISYLQFMRESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESL+RRA++MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK+AGKV DVFYCL+L
Sbjct: 361 ESLKRRAQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKKAGKVADVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED+RGYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDHRGYSR 480
Query: 463 M 463
+
Sbjct: 481 I 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147779937|emb|CAN62302.1| hypothetical protein VITISV_023686 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/481 (83%), Positives = 433/481 (90%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
M+ K LDYE++NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MSHKGLDYETLNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVVALCQAPFLLDDPNVG+VFPADAIARAKHYLSLTSGGLGAYSDSRG+PG+RKEVAEFI
Sbjct: 61 QVVALCQAPFLLDDPNVGLVFPADAIARAKHYLSLTSGGLGAYSDSRGLPGIRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------------------LF 162
RRDGYPSDPELIFLTDGASKGVMQ LN +IRGE DG+++ L
Sbjct: 121 GRRDGYPSDPELIFLTDGASKGVMQILNTIIRGERDGILVPVPQYPLYSAAISLFGGSLV 180
Query: 163 HTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ L +N+L SVA ARSKGITVRAMVIINPGNPTGQCLSEANL+EIL FCY
Sbjct: 181 PYYLEETANWGLDVNNLHSSVAAARSKGITVRAMVIINPGNPTGQCLSEANLKEILHFCY 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
QENLVLLGDEVYQQNIYQDERPF+S++KVLMDMG P SKE+QLVSFHTVSKGYWGECGQR
Sbjct: 241 QENLVLLGDEVYQQNIYQDERPFISARKVLMDMGPPISKELQLVSFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPP+TVDEIYK+ASI+LSPNVP QIF+G+MVNP PGDISY QF+RESKGIL
Sbjct: 301 GGYFEMTNIPPQTVDEIYKVASISLSPNVPGQIFLGVMVNPPTPGDISYLQFMRESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESL+RRA++MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK+AGKV DVFYCL+L
Sbjct: 361 ESLKRRAQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKKAGKVADVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEE MPAIMESFKKFNDEFMEQYED+RGYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEXMPAIMESFKKFNDEFMEQYEDHRGYSR 480
Query: 463 M 463
M
Sbjct: 481 M 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15223186|ref|NP_177215.1| alanine-2-oxoglutarate aminotransferase 2 [Arabidopsis thaliana] gi|42572063|ref|NP_974122.1| alanine-2-oxoglutarate aminotransferase 2 [Arabidopsis thaliana] gi|79321034|ref|NP_001031262.1| alanine-2-oxoglutarate aminotransferase 2 [Arabidopsis thaliana] gi|79321061|ref|NP_001031263.1| alanine-2-oxoglutarate aminotransferase 2 [Arabidopsis thaliana] gi|75193808|sp|Q9S7E9.1|GGT2_ARATH RecName: Full=Glutamate--glyoxylate aminotransferase 2; Short=AtGGT2; AltName: Full=Alanine aminotransferase GGT2; AltName: Full=Alanine--glyoxylate aminotransferase GGT2; AltName: Full=Alanine-2-oxoglutarate aminotransferase 2 gi|12324762|gb|AAG52344.1|AC011663_23 putative alanine aminotransferase; 91367-88744 [Arabidopsis thaliana] gi|12325053|gb|AAG52480.1|AC010796_19 putative alanine aminotransferase; 63135-65758 [Arabidopsis thaliana] gi|24461829|gb|AAN62333.1|AF479640_1 glutamate:glyoxylate aminotransferase 2 [Arabidopsis thaliana] gi|14334914|gb|AAK59635.1| putative alanine aminotransferase [Arabidopsis thaliana] gi|17104535|gb|AAL34156.1| putative alanine aminotransferase [Arabidopsis thaliana] gi|222423048|dbj|BAH19506.1| AT1G70580 [Arabidopsis thaliana] gi|332196961|gb|AEE35082.1| alanine-2-oxoglutarate aminotransferase 2 [Arabidopsis thaliana] gi|332196962|gb|AEE35083.1| alanine-2-oxoglutarate aminotransferase 2 [Arabidopsis thaliana] gi|332196963|gb|AEE35084.1| alanine-2-oxoglutarate aminotransferase 2 [Arabidopsis thaliana] gi|332196964|gb|AEE35085.1| alanine-2-oxoglutarate aminotransferase 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/481 (83%), Positives = 436/481 (90%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
M+ KALDYES+NENVK QYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MSLKALDYESLNENVKNCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVV+LCQAPFLLDDPNVG++FPADAIARAKHYLSLTSGGLGAYSDSRG+PGVRKEVAEFI
Sbjct: 61 QVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTT--------- 165
ERRDGYPSDPELIFLTDGASKGVMQ LNCVIRG+ DG+++ L+ T
Sbjct: 121 ERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISLLGGTLV 180
Query: 166 ---WKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ + L +N+L+QSVAQARS+GITVRAMVIINPGNPTGQCLSEAN+REILRFC
Sbjct: 181 PYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILRFCC 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
E LVLLGDEVYQQNIYQDERPF+SSKKVLMDMG P SKEVQL+SFHTVSKGYWGECGQR
Sbjct: 241 DERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPP+TV+EIYK+ASIALSPNV AQIFMGLMV+P KPGDISY+QFVRESKGIL
Sbjct: 301 GGYFEMTNIPPRTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYDQFVRESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESLRRRARMMTDGFNSC+NVVCNFTEGAMYSFPQI+LP KAI+AAK+AGKVPDVFYCL+L
Sbjct: 361 ESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPSKAIQAAKQAGKVPDVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEE+MP IM+SFKKFNDEFM QY D GYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQYADNFGYSR 480
Query: 463 M 463
M
Sbjct: 481 M 481
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222424303|dbj|BAH20108.1| AT1G70580 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/481 (83%), Positives = 436/481 (90%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
M+ KALDYES+NENVK QYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MSLKALDYESLNENVKNCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVV+LCQAPFLLDDPNVG++FPADAIARAKHYLSLTSGGLGAYSDSRG+PGVRKEVAEFI
Sbjct: 61 QVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTT--------- 165
ERRDGYPSDPELIFLTDGASKGVMQ LNCVIRG+ DG+++ L+ T
Sbjct: 121 ERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISLLGGTLV 180
Query: 166 ---WKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ + L +N+L+QSVAQARS+GITVRAMVIINPGNPTGQCLSEAN+REILRFC
Sbjct: 181 PYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILRFCC 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
E LVLLGDEVYQQNIYQDERPF+SSKKVLMDMG P SKEVQL+SFHTVSKGYWGECGQR
Sbjct: 241 DERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPP+TV+EI+K+ASIALSPNV AQIFMGLMV+P KPGDISY+QFVRESKGIL
Sbjct: 301 GGYFEMTNIPPRTVEEIHKVASIALSPNVSAQIFMGLMVSPPKPGDISYDQFVRESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESLRRRARMMTDGFNSC+NVVCNFTEGAMYSFPQI+LP KAI+AAK+AGKVPDVFYCL+L
Sbjct: 361 ESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPSKAIQAAKQAGKVPDVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEE+MP IM+SFKKFNDEFM QY D GYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQYADNFGYSR 480
Query: 463 M 463
M
Sbjct: 481 M 481
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850792|ref|XP_002893277.1| alanine-2-oxoglutarate aminotransferase 1 [Arabidopsis lyrata subsp. lyrata] gi|297339119|gb|EFH69536.1| alanine-2-oxoglutarate aminotransferase 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/481 (82%), Positives = 436/481 (90%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
MA KALDY+++NENVKK QYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MALKALDYDTLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVVALCQAPFLLDDPNVG++FPADAIARAKHYLSLTSGGLGAYSDSRG+PGVRKEVAEFI
Sbjct: 61 QVVALCQAPFLLDDPNVGMLFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTT--------- 165
+RRDGYPSDPELIFLTDGASKGVMQ LNCVIRG+GDG+++ L+ T
Sbjct: 121 QRRDGYPSDPELIFLTDGASKGVMQILNCVIRGDGDGILVPVPQYPLYSATISLLGGTLV 180
Query: 166 ---WKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
Q L +N+L+QSVAQARS+GITVRAMVIINPGNPTGQCLSEAN+REIL+FCY
Sbjct: 181 PYYLDESQNWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILKFCY 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
E LVLLGDEVYQQNIYQDERPF+SSKKVLM+MG PFSK VQLVSFHTVSKGYWGECGQR
Sbjct: 241 NEKLVLLGDEVYQQNIYQDERPFISSKKVLMEMGSPFSKGVQLVSFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTN+PP+ V+EIYK+ASIALSPNV AQI MGLMV+P KPGDISY+QF RESKGIL
Sbjct: 301 GGYFEMTNLPPRVVEEIYKVASIALSPNVSAQILMGLMVSPPKPGDISYDQFARESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESLRRRAR+MTDGFNSC+NVVCNFTEGAMYSFPQIRLPP AI+AAK+AGKVPDVFYCL+L
Sbjct: 361 ESLRRRARIMTDGFNSCKNVVCNFTEGAMYSFPQIRLPPGAIQAAKQAGKVPDVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEE+MP IM+SFKKFNDEFM QY++ GYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMTQYDNNVGYSR 480
Query: 463 M 463
M
Sbjct: 481 M 481
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21537112|gb|AAM61453.1| putative alanine aminotransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/481 (83%), Positives = 435/481 (90%), Gaps = 18/481 (3%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
M+ KALDYES+NENVK QYAVRGELYLRASELQKE KKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MSLKALDYESLNENVKNCQYAVRGELYLRASELQKECKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVV+LCQAPFLLDDPNVG++FPADAIARAKHYLSLTSGGLGAYSDSRG+PGVRKEVA+FI
Sbjct: 61 QVVSLCQAPFLLDDPNVGMIFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVADFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTT--------- 165
ERRDGYPSDPELIFLTDGASKGVMQ LNCVIRG+ DG+++ L+ T
Sbjct: 121 ERRDGYPSDPELIFLTDGASKGVMQILNCVIRGQKDGILVPVPQYPLYSATISLLGGTLV 180
Query: 166 ---WKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
+ + L +N+L+QSVAQARS+GITVRAMVIINPGNPTGQCLSEAN+REILRFC
Sbjct: 181 PYYLEESENWGLDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILRFCC 240
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
E LVLLGDEVYQQNIYQDERPF+SSKKVLMDMG P SKEVQL+SFHTVSKGYWGECGQR
Sbjct: 241 DERLVLLGDEVYQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYWGECGQR 300
Query: 283 GGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
GGYFEMTNIPP+TV+EIYK+ASIALSPNV AQIFMGLMV+P KPGDISY+QFVRESKGIL
Sbjct: 301 GGYFEMTNIPPRTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYDQFVRESKGIL 360
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
ESLRRRARMMTDGFNSC+NVVCNFTEGAMYSFPQI+LP KAI+AAK+AGKVPDVFYCL+L
Sbjct: 361 ESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPSKAIQAAKQAGKVPDVFYCLKL 420
Query: 403 LEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSR 462
LEATGISTVPGSGFGQKEG+FHLRTTILPAEE+MP IM+SFKKFNDEFM QY D GYSR
Sbjct: 421 LEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQYADNFGYSR 480
Query: 463 M 463
M
Sbjct: 481 M 481
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 463 | ||||||
| TAIR|locus:2026841 | 481 | AOAT2 "alanine-2-oxoglutarate | 0.626 | 0.602 | 0.882 | 5.4e-217 | |
| TAIR|locus:2028000 | 481 | GGT1 "glutamate:glyoxylate ami | 0.626 | 0.602 | 0.858 | 4.4e-215 | |
| DICTYBASE|DDB_G0285899 | 534 | DDB_G0285899 "glutamate pyruva | 0.606 | 0.526 | 0.522 | 1.1e-116 | |
| TAIR|locus:2195808 | 543 | AlaAT1 "alanine aminotransfera | 0.609 | 0.519 | 0.522 | 8.1e-108 | |
| MGI|MGI:1915391 | 522 | Gpt2 "glutamic pyruvate transa | 0.742 | 0.659 | 0.402 | 2.8e-101 | |
| UNIPROTKB|G3V872 | 522 | Gpt2 "Protein Gpt2" [Rattus no | 0.742 | 0.659 | 0.399 | 4.6e-101 | |
| ZFIN|ZDB-GENE-050302-11 | 566 | gpt2l "glutamic pyruvate trans | 0.604 | 0.494 | 0.459 | 4.6e-101 | |
| UNIPROTKB|Q6GM82 | 540 | gpt2 "Alanine aminotransferase | 0.604 | 0.518 | 0.466 | 1.2e-100 | |
| UNIPROTKB|Q28DB5 | 524 | gpt2 "Alanine aminotransferase | 0.604 | 0.534 | 0.469 | 3.2e-100 | |
| UNIPROTKB|A4IFH5 | 496 | GPT "Alanine aminotransferase | 0.604 | 0.564 | 0.437 | 3.7e-99 |
| TAIR|locus:2026841 AOAT2 "alanine-2-oxoglutarate aminotransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1358 (483.1 bits), Expect = 5.4e-217, Sum P(2) = 5.4e-217
Identities = 256/290 (88%), Positives = 276/290 (95%)
Query: 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233
L +N+L+QSVAQARS+GITVRAMVIINPGNPTGQCLSEAN+REILRFC E LVLLGDEV
Sbjct: 192 LDVNNLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILRFCCDERLVLLGDEV 251
Query: 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293
YQQNIYQDERPF+SSKKVLMDMG P SKEVQL+SFHTVSKGYWGECGQRGGYFEMTNIPP
Sbjct: 252 YQQNIYQDERPFISSKKVLMDMGAPISKEVQLISFHTVSKGYWGECGQRGGYFEMTNIPP 311
Query: 294 KTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
+TV+EIYK+ASIALSPNV AQIFMGLMV+P KPGDISY+QFVRESKGILESLRRRARMMT
Sbjct: 312 RTVEEIYKVASIALSPNVSAQIFMGLMVSPPKPGDISYDQFVRESKGILESLRRRARMMT 371
Query: 354 DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413
DGFNSC+NVVCNFTEGAMYSFPQI+LP KAI+AAK+AGKVPDVFYCL+LLEATGISTVPG
Sbjct: 372 DGFNSCKNVVCNFTEGAMYSFPQIKLPSKAIQAAKQAGKVPDVFYCLKLLEATGISTVPG 431
Query: 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSRM 463
SGFGQKEG+FHLRTTILPAEE+MP IM+SFKKFNDEFM QY D GYSRM
Sbjct: 432 SGFGQKEGVFHLRTTILPAEEEMPEIMDSFKKFNDEFMSQYADNFGYSRM 481
|
|
| TAIR|locus:2028000 GGT1 "glutamate:glyoxylate aminotransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1334 (474.7 bits), Expect = 4.4e-215, Sum P(2) = 4.4e-215
Identities = 249/290 (85%), Positives = 275/290 (94%)
Query: 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233
L + +L+QSVAQARS+GITVRAMVIINPGNPTGQCLSEAN+REIL+FCY E LVLLGDEV
Sbjct: 192 LDVANLRQSVAQARSQGITVRAMVIINPGNPTGQCLSEANIREILKFCYNEKLVLLGDEV 251
Query: 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293
YQQNIYQDERPF+SSKKVLM+MG PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN+PP
Sbjct: 252 YQQNIYQDERPFISSKKVLMEMGSPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNLPP 311
Query: 294 KTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
+ V+EIYK+ASIALSPNV AQIFMGLMVNP KPGDISY+QF RESKGILESLRRRAR+MT
Sbjct: 312 RVVEEIYKVASIALSPNVSAQIFMGLMVNPPKPGDISYDQFARESKGILESLRRRARLMT 371
Query: 354 DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413
DGFNSC+NVVCNFTEGAMYSFPQIRLP A++AAK+AGKVPDVFYCL+LLEATGISTVPG
Sbjct: 372 DGFNSCKNVVCNFTEGAMYSFPQIRLPTGALQAAKQAGKVPDVFYCLKLLEATGISTVPG 431
Query: 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYEDYRGYSRM 463
SGFGQKEG+FHLRTTILPAE++MP IM+SFKKFNDEFM QY++ GYS+M
Sbjct: 432 SGFGQKEGVFHLRTTILPAEDEMPEIMDSFKKFNDEFMTQYDNNFGYSKM 481
|
|
| DICTYBASE|DDB_G0285899 DDB_G0285899 "glutamate pyruvate transaminase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 1.1e-116, Sum P(2) = 1.1e-116
Identities = 148/283 (52%), Positives = 205/283 (72%)
Query: 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233
L I+ L+ S A SKGI RA+VIINPGNPTGQCL AN+ EI++FC ++N+VLL DEV
Sbjct: 253 LEISQLEHSYNDAVSKGINPRALVIINPGNPTGQCLDRANMEEIVKFCLEKNVVLLADEV 312
Query: 234 YQQNIY-QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292
YQ+N+Y ++ +PF+S KKV+ DMG ++ ++++VSFH+VSKG+ GECG+RGGY E+ +
Sbjct: 313 YQENVYVKESKPFISFKKVVKDMGGDYA-DLEMVSFHSVSKGFVGECGKRGGYMELNGVT 371
Query: 293 PKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMM 352
EIYK+ASI L PNV Q+ + LMV P G+ S++ +++E I ESL++RA ++
Sbjct: 372 QDVKAEIYKLASIGLCPNVIGQLVVDLMVRPPVAGEQSHDLYLKERDNIYESLKKRANLL 431
Query: 353 TDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412
T+ N+ V CN +EGAMY+FPQIRLP KA+E A GK PD +YC++LLEATGI VP
Sbjct: 432 TNALNNLEGVTCNPSEGAMYAFPQIRLPAKAVEYANSIGKAPDAYYCIQLLEATGICVVP 491
Query: 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYE 455
GSGFGQK+G +H RTT LP+EE + + + F+ FM +Y+
Sbjct: 492 GSGFGQKDGTWHFRTTFLPSEEAIEGVCKRIADFHQSFMNKYK 534
|
|
| TAIR|locus:2195808 AlaAT1 "alanine aminotransferas" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 8.1e-108, Sum P(2) = 8.1e-108
Identities = 148/283 (52%), Positives = 194/283 (68%)
Query: 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233
L I++L++ + ARSKGITVRA+ +INPGNPTGQ LSE N R++++FC QE LVLL DEV
Sbjct: 262 LEISELKKQLEDARSKGITVRALAVINPGNPTGQVLSEENQRDVVKFCKQEGLVLLADEV 321
Query: 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293
YQ+N+Y ++ F S KKV MG K++ LVSF +VSKGY+GECG+RGGY E+T
Sbjct: 322 YQENVYVPDKKFHSFKKVARSMGYG-EKDLALVSFQSVSKGYYGECGKRGGYMEVTGFTS 380
Query: 294 KTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
++IYK+AS+ L N+ QI L+++P KPGD SYE ++ E GIL SL RRA+ +
Sbjct: 381 DVREQIYKMASVNLCSNISGQILASLIMSPPKPGDDSYESYIAEKDGILSSLARRAKTLE 440
Query: 354 DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413
+ N V CN EGAMY FP + LP KAI AA+ PD FYC RLL+ATGI VPG
Sbjct: 441 EALNKLEGVTCNRAEGAMYLFPCLHLPQKAIAAAEAEKTAPDNFYCKRLLKATGIVVVPG 500
Query: 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 456
SGF Q G +H R TILP E+ +PAI++ F+ FM+++ D
Sbjct: 501 SGFRQVPGTWHFRCTILPQEDKIPAIVDRLTAFHQSFMDEFRD 543
|
|
| MGI|MGI:1915391 Gpt2 "glutamic pyruvate transaminase (alanine aminotransferase) 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 689 (247.6 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
Identities = 142/353 (40%), Positives = 212/353 (60%)
Query: 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK-GVM-----QTLNCVIRGEGDGVVLL 161
G+P + DG + +L+ G S+ GVM L + E D V +
Sbjct: 172 GVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMIPIPQYPLYSAVISELDAVQVN 231
Query: 162 FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221
++ + L +++L++++ QA+ + + IINPGNPTGQ S + +++ F
Sbjct: 232 YYLD--EENCWALNVDELRRALRQAKDH-CDPKVLCIINPGNPTGQVQSRKCIEDVIHFA 288
Query: 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQ 281
++E L LL DEVYQ N+Y + F S KKVL MG +S V+L SFH+ SKGY GECG
Sbjct: 289 WEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYQMGHEYSSNVELASFHSTSKGYMGECGY 348
Query: 282 RGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341
RGGY E+ N+ P+ ++ K+ S+ L P V Q M ++VNP +PG+ S+EQF RE + +
Sbjct: 349 RGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPEPGEESFEQFSREKEFV 408
Query: 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLR 401
L +L ++A++ D FN + CN +GAMY+FP+I +P KA+EAA+ PD+FYC++
Sbjct: 409 LGNLAKKAKLTEDLFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQSHKMAPDMFYCMK 468
Query: 402 LLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
LLE TGI VPGSGFGQ+EG +H R TILP + + ++ K F+ +F+EQY
Sbjct: 469 LLEETGICVVPGSGFGQREGTYHFRMTILPPVDKLKTVLHKVKDFHLKFLEQY 521
|
|
| UNIPROTKB|G3V872 Gpt2 "Protein Gpt2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 687 (246.9 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 141/353 (39%), Positives = 210/353 (59%)
Query: 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK-GVM-----QTLNCVIRGEGDGVVLL 161
G+P + DG + +L+ G S+ GVM L + E D + +
Sbjct: 172 GVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVN 231
Query: 162 FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221
++ L +++L++++ QA+ + + IINPGNPTGQ S + +++ F
Sbjct: 232 YYLD--EDNCWALNVDELRRALRQAKDH-CDPKVLCIINPGNPTGQVQSRKCIEDVIHFA 288
Query: 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQ 281
++E L LL DEVYQ N+Y + F S KKVL MG +S V+L SFH+ SKGY GECG
Sbjct: 289 WEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYQMGPEYSSNVELASFHSTSKGYMGECGY 348
Query: 282 RGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341
RGGY E+ N+ P+ ++ K+ S+ L P V Q M ++VNP PG+ S+EQF RE + +
Sbjct: 349 RGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVPGEESFEQFTREKESV 408
Query: 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLR 401
L +L ++A++ D FN + CN +GAMY+FP+I +P KA+EAA+ PD+FYC++
Sbjct: 409 LGNLAKKAKLTEDLFNQVPGIQCNPLQGAMYAFPRILIPAKAVEAAQSHKMAPDMFYCMK 468
Query: 402 LLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
LLE TGI VPGSGFGQ+EG +H R TILP E + ++ K F+ +F+E+Y
Sbjct: 469 LLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLHKVKDFHLKFLEKY 521
|
|
| ZFIN|ZDB-GENE-050302-11 gpt2l "glutamic pyruvate transaminase (alanine aminotransferase) 2, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 673 (242.0 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
Identities = 129/281 (45%), Positives = 182/281 (64%)
Query: 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233
L I++LQ+S+ AR K R + IINPGNPTGQ S + ++++F +ENL L+ DEV
Sbjct: 286 LDISELQRSLQAAR-KHCNPRVLCIINPGNPTGQVQSRQCIEDVIQFAAKENLFLMADEV 344
Query: 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293
YQ N+Y F S KKVL +MG +SK+V+L SFH+ SK Y GECG RGGY E+ N+
Sbjct: 345 YQDNVYAKGCEFHSFKKVLFEMGPEYSKKVELASFHSTSKCYMGECGFRGGYMEVINMDA 404
Query: 294 KTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
++ K+ S+ L P P Q M L+VNP +PG+ S++ F++E +L +L +A++
Sbjct: 405 DVKAQLTKLVSVRLCPPAPGQALMDLVVNPPQPGEPSHQTFMQERTAVLSALAEKAKLTE 464
Query: 354 DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413
N+ + CN +GAMYSFP+I LP +AI AK G+ PD+FYC++LLE TGI VPG
Sbjct: 465 QILNTVPGISCNPVQGAMYSFPRITLPERAISEAKAKGQAPDMFYCMKLLEETGICLVPG 524
Query: 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
SGFGQ+EG +H R TILP + + ++ K F+ F +QY
Sbjct: 525 SGFGQREGTYHFRMTILPPTDKLKLMLNKLKDFHQRFTQQY 565
|
|
| UNIPROTKB|Q6GM82 gpt2 "Alanine aminotransferase 2" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
Identities = 131/281 (46%), Positives = 192/281 (68%)
Query: 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233
L IN+L++++A+AR K + + IINPGNPTGQ S + +++RF +ENL L+ DEV
Sbjct: 260 LDINELRRALAEAR-KHCDPKVLCIINPGNPTGQVQSRKCIEDVIRFAAEENLFLMADEV 318
Query: 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293
YQ N+Y F S KKVL +MG +S+ ++L SFH+ SKGY GECG RGGY E+ N+ P
Sbjct: 319 YQDNVYAKGCAFHSFKKVLFEMGPKYSETLELASFHSTSKGYMGECGFRGGYMEVINMDP 378
Query: 294 KTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
++ K+ S+ L P VP Q+ + ++VNP KPG+ SY+QF+ E + +L +L +AR+
Sbjct: 379 AVKQQLTKLVSVRLCPPVPGQVLLDVIVNPPKPGEPSYKQFISEKQAVLNNLAEKARLTE 438
Query: 354 DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413
+ N + CN +GAMYSFP+I +P KAI+ A+ G+ PD+F+C++LLE TGI VPG
Sbjct: 439 EILNQAPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPG 498
Query: 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
SGFGQ+EG H R TILP + + +++E K F+ +FM++Y
Sbjct: 499 SGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFMDEY 539
|
|
| UNIPROTKB|Q28DB5 gpt2 "Alanine aminotransferase 2" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 3.2e-100, Sum P(2) = 3.2e-100
Identities = 132/281 (46%), Positives = 189/281 (67%)
Query: 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233
L IN+L++S+ +AR K + + IINPGNPTGQ S + +++RF +ENL L+ DEV
Sbjct: 244 LDINELRRSLTEAR-KHCDPKVLCIINPGNPTGQVQSRKCIEDVIRFAAEENLFLMADEV 302
Query: 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293
YQ N+Y F S KKVL +MG +S+ V+L SFH+ SKGY GECG RGGY E+ N+ P
Sbjct: 303 YQDNVYAKGCTFHSFKKVLFEMGPKYSETVELASFHSTSKGYMGECGFRGGYMEVINMDP 362
Query: 294 KTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
++ K+ S+ L P VP Q + ++VNP KPG+ SY+QF+ E + +L +L +AR+
Sbjct: 363 AVKQQLTKLVSVRLCPPVPGQALLDVIVNPPKPGEPSYKQFMAEKQAVLGNLAEKARLTE 422
Query: 354 DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413
+ N + CN +GAMYSFP+I +P KAI+ A+ G+ PD+F+C++LLE TGI VPG
Sbjct: 423 EILNQSPGIRCNPVQGAMYSFPRIHIPEKAIKLAQAEGQAPDMFFCMKLLEETGICVVPG 482
Query: 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
SGFGQ+EG H R TILP + + +++E K F+ +F E+Y
Sbjct: 483 SGFGQREGTHHFRMTILPPTDKLKSLLERLKDFHQKFTEEY 523
|
|
| UNIPROTKB|A4IFH5 GPT "Alanine aminotransferase 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 123/281 (43%), Positives = 183/281 (65%)
Query: 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233
L + +L++++ QAR RA+ +INPGNPTGQ + + +++RF Y+E L LL DEV
Sbjct: 216 LDVAELRRALRQARDH-CRPRALCVINPGNPTGQVQTRECIEDVIRFAYEEKLFLLADEV 274
Query: 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293
YQ N+Y + F S KKVL +MG P++ + +L SFH++SKGY GECG RGGY E+ N+
Sbjct: 275 YQDNVYAESSQFHSFKKVLTEMGPPYAAQQELASFHSISKGYMGECGFRGGYVEVVNMDA 334
Query: 294 KTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
++ K+ S+ L P P Q+ + + V+P P D S+ +F E + +L L +A++
Sbjct: 335 AVKQQMQKLRSVRLCPPTPGQVLLDVAVSPPAPSDPSFPRFQAERRAVLAELAAKAKLTE 394
Query: 354 DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413
FN + CN +GAMYSFP+++LPP+A++ A+ G PD+F+CLRLLE TGI VPG
Sbjct: 395 QVFNEAPGIRCNPVQGAMYSFPRVQLPPRAVQRAQELGLAPDMFFCLRLLEETGICVVPG 454
Query: 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
SGFGQ+EG +H R TILP E + ++E +F+ +F +Y
Sbjct: 455 SGFGQREGTYHFRMTILPPMEKLRPLLEKLSQFHAKFTREY 495
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9S7E9 | GGT2_ARATH | 2, ., 6, ., 1, ., - | 0.8357 | 1.0 | 0.9625 | yes | no |
| Q8TD30 | ALAT2_HUMAN | 2, ., 6, ., 1, ., 2 | 0.4211 | 0.9632 | 0.8527 | yes | no |
| Q54MJ7 | ALAM_DICDI | 2, ., 6, ., 1, ., 2 | 0.4834 | 0.9740 | 0.8445 | yes | no |
| Q8BGT5 | ALAT2_MOUSE | 2, ., 6, ., 1, ., 2 | 0.4241 | 0.9632 | 0.8544 | yes | no |
| Q9LR30 | GGT1_ARATH | 2, ., 6, ., 1, ., - | 0.8236 | 0.9978 | 0.9604 | no | no |
| Q10334 | ALAT_SCHPO | 2, ., 6, ., 1, ., 2 | 0.4016 | 0.9568 | 0.8772 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.921 |
| 4th Layer | 2.6.1.2 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 463 | |||
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 0.0 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 0.0 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 1e-167 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 5e-43 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 1e-36 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 2e-34 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 2e-32 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 3e-23 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 5e-20 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 3e-16 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 8e-16 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 1e-15 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 1e-14 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 2e-14 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 4e-14 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 7e-14 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 2e-12 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 2e-11 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 2e-11 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 5e-11 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 9e-11 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 2e-10 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 2e-10 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 2e-10 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 8e-10 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 1e-09 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 3e-09 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 3e-09 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 4e-09 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 4e-09 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 5e-09 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 2e-08 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 3e-08 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 4e-08 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 6e-08 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 1e-07 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 2e-07 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 7e-07 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 3e-06 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 1e-05 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 2e-05 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 3e-05 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 6e-05 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 6e-05 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 1e-04 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 2e-04 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 5e-04 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 0.001 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 0.002 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 0.002 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 0.002 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 0.002 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 0.003 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 784 bits (2027), Expect = 0.0
Identities = 346/408 (84%), Positives = 368/408 (90%), Gaps = 20/408 (4%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPR 60
M+ KALDYES+NENVKK QYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQ+PLTFPR
Sbjct: 1 MSLKALDYESLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPR 60
Query: 61 QVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI 120
QVVALCQAPFLLDDPNVG++FPADAIARAKHYLSLTSGGLGAYSDSRG+PGVRKEVAEFI
Sbjct: 61 QVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFI 120
Query: 121 ERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL-------------LFHTTW- 166
ERRDGYPSDPELIFLTDGASKGVMQ LN VIRGE DGV++ L T
Sbjct: 121 ERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLV 180
Query: 167 -----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221
+ + G L +N+L+QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL+FC
Sbjct: 181 PYYLEESENWG-LDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFC 239
Query: 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQ 281
YQE LVLLGDEVYQQNIYQDERPF+S+KKVLMDMG P SKEVQLVSFHTVSKGYWGECGQ
Sbjct: 240 YQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQ 299
Query: 282 RGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341
RGGYFEMTNIPPKTV+EIYK+ASIALSPNV QIFMGLMVNP KPGDISY+QFVRESKGI
Sbjct: 300 RGGYFEMTNIPPKTVEEIYKVASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGI 359
Query: 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389
LESLRRRARMMTDGFNSC+NVVCNFTEGAMYSFPQI+LPPKAIEAA+
Sbjct: 360 LESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPPKAIEAARM 407
|
Length = 407 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 632 bits (1632), Expect = 0.0
Identities = 236/479 (49%), Positives = 316/479 (65%), Gaps = 27/479 (5%)
Query: 3 PKALDYESMNENVKKVQYAVRGELYLRASELQKE---------GKKIIFTNVGNPHALGQ 53
K+ E +N V +YAVRG + RA+E+++E I++ N+GNP ALGQ
Sbjct: 2 MKSFTVEDINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQ 61
Query: 54 RPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVR 113
+PLTF RQV++L + PFLL+DP+V +FPAD +ARAK YL+ GG GAY+DS G P VR
Sbjct: 62 KPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVR 121
Query: 114 KEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTWK 167
K VA FIERRDG P DP IFLTDGAS G+ L +I DGV++ L+
Sbjct: 122 KAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAIT 181
Query: 168 R---QQIG---------VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215
+Q+ L +L+++ QA GIT RA+V+INPGNPTGQ L+ +
Sbjct: 182 LLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVME 241
Query: 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275
EI++FCY++ +VL+ DEVYQ+NIY E+PF+S +KVL+++ ++ +V+LVSFH+ SKG
Sbjct: 242 EIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGI 301
Query: 276 WGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335
GECG+RGGYFE+TNIPP+ ++IYK+ASI L NV Q+ GLM NP + GD SY +
Sbjct: 302 IGECGRRGGYFELTNIPPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYK 361
Query: 336 RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395
RE I SL+RRA ++TD N V C EGAMY+FP+I LP KAI+ AK G PD
Sbjct: 362 RERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGLAPD 421
Query: 396 VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
V YCL LLE+TGI VPGSGFGQK G +H R TILP EE + +++ K+F++ FM++Y
Sbjct: 422 VLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFMKKY 480
|
Length = 481 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 482 bits (1242), Expect = e-167
Identities = 235/490 (47%), Positives = 303/490 (61%), Gaps = 43/490 (8%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKK---------IIFTNVGNPHAL 51
P LD ++N V K +YAVRGE+ A LQ+E K I++ N+GNP +L
Sbjct: 54 SLPVTLD--TINPKVLKCEYAVRGEIVTIAQRLQEELKTNPGSYPFDEILYCNIGNPQSL 111
Query: 52 GQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIP 110
GQ+P+TF R+V+ALC P LLD +F ADAI RA L G GAYS S+GI
Sbjct: 112 GQQPITFFREVLALCDHPSLLDKSETHGLFSADAIERAWQILDQIPGRATGAYSHSQGIK 171
Query: 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV----------- 159
G+R +A IE RDG+P+DP IFLTDGAS V + +IR E DG++
Sbjct: 172 GLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSA 231
Query: 160 -LLFH------------TTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206
+ H T W L I++L++ + ARSKGITVRA+V+INPGNPTG
Sbjct: 232 SIALHGGTLVPYYLDEATGWG------LEISELKKQLEDARSKGITVRALVVINPGNPTG 285
Query: 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLV 266
Q L+E N R+I+ FC QE LVLL DEVYQ+N+Y ++ F S KKV MG K++ LV
Sbjct: 286 QVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYG-EKDISLV 344
Query: 267 SFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKP 326
SF +VSKGY+GECG+RGGY E+T ++IYK+AS+ L N+ QI L+++P KP
Sbjct: 345 SFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKP 404
Query: 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEA 386
GD SYE ++ E GIL SL RRA+ + D NS V CN EGAMY FP+I LP KAI+A
Sbjct: 405 GDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPRIHLPQKAIKA 464
Query: 387 AKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446
A+ A PD FYC RLL ATGI VPGSGFGQ G +H R TILP E+ +PAI+ +F
Sbjct: 465 AEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEF 524
Query: 447 NDEFMEQYED 456
+ FM+++ D
Sbjct: 525 HKSFMDEFRD 534
|
Length = 534 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 5e-43
Identities = 84/361 (23%), Positives = 158/361 (43%), Gaps = 50/361 (13%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161
Y+ S GIP +R+ +AE +RR G DPE I +T GA + + ++ GD V++
Sbjct: 61 YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-NPGDEVLIP 119
Query: 162 --FHTTWKRQQI---GVLII-------NDLQQSVAQARSKGIT--VRAMVIINPGNPTGQ 207
+ +++ G + N + + + IT +A+++ +P NPTG
Sbjct: 120 DPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAA-ITPKTKAIILNSPNNPTGA 178
Query: 208 CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVS 267
S+ L+ I+ + +++++ DE+Y++ +Y D S ++ + ++
Sbjct: 179 VYSKEELKAIVELAREHDIIIISDEIYEELVY-DGAEHPSILELAGA-------RDRTIT 230
Query: 268 FHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALS-PNVPAQIFMGLMVNPLKP 326
++ SK Y G G R G+ + P + + + K+ S S PAQ + L
Sbjct: 231 INSFSKTY-GMTGWRIGW--VVGPPEELIAALRKLKSYLTSCAPTPAQY---AAIAALNG 284
Query: 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIE 385
++ V E + E R R ++ + N + EGA Y FP+I
Sbjct: 285 PQ--SDEVVEE---MREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIP------- 332
Query: 386 AAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKK 445
+ + +LLE G++ VPGSGFG+ G ++R ++ +EE + + +
Sbjct: 333 -----ELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLAR 387
Query: 446 F 446
F
Sbjct: 388 F 388
|
Length = 393 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-36
Identities = 83/379 (21%), Positives = 145/379 (38%), Gaps = 52/379 (13%)
Query: 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGAS 140
FP + GL Y G+P +R+ +AE++ RR G PE I +T+GA
Sbjct: 10 FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQ 69
Query: 141 KGVMQTLNCVIRGEGDGVVL------LFHTTWKRQQIGVLII------NDLQQSVAQARS 188
+ + L ++ GD V++ + + V+ + L +
Sbjct: 70 EALSLLLRALLN-PGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAA 128
Query: 189 KGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248
K + + + NP NPTG LSE L E+ + ++++ DE Y + +Y E P +
Sbjct: 129 KTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALA 188
Query: 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIA-- 306
L + E +++ + SK + G G R GY PP+ + E K
Sbjct: 189 --------LLDAYE-RVIVLRSFSKTF-GLPGLRIGYLI---APPEELLERLKKLLPYTT 235
Query: 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF 366
P+ +Q ++ E+ + E + E RRR + + +V
Sbjct: 236 SGPSTLSQAAAAAALDD-------GEEHLEE---LRERYRRRRDALLEALKELGPLVVVK 285
Query: 367 TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLR 426
G + + + LP D + RLL G+ PGS FG+ G +R
Sbjct: 286 PSGGFFLW--LDLPEG-----------DDEEFLERLLLEAGVVVRPGSAFGE-GGEGFVR 331
Query: 427 TTILPAEEDMPAIMESFKK 445
+ EE++ +E +
Sbjct: 332 LSFATPEEELEEALERLAE 350
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 2e-34
Identities = 111/453 (24%), Positives = 189/453 (41%), Gaps = 84/453 (18%)
Query: 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVV-ALCQAPF 70
+E V+YA+R ++ L A EL+K+G K+I N+G+P +P P + A C
Sbjct: 5 SERAMGVEYAIR-DVVLPARELEKKGIKVIRLNIGDPVKFDFQP---PEHMKEAYC---- 56
Query: 71 LLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP 130
AI +Y Y S G+P +R+ + + +R++G P
Sbjct: 57 -------------RAIKEGHNY----------YGPSEGLPELREAIVKREKRKNGVDITP 93
Query: 131 ELIFLTDGASKGVMQTLNCVIRGEGDGVVL------------LFHTTWKRQQIGVLIIND 178
+ + +T ++ +Q + + GD +++ F+ + +
Sbjct: 94 DDVRVTAAVTEA-LQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEE-EG 151
Query: 179 LQQSVAQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236
Q + R K IT +A+ +INP NPTG + L+EIL + +L ++ DE+Y
Sbjct: 152 WQPDIDDIRKK-ITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDL 210
Query: 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296
Y+ + VS + +K+V ++ + +SK Y+ G R GY + K
Sbjct: 211 MTYEGK--HVSPGSL--------TKDVPVIVMNGLSKVYFAT-GWRLGYIYFVDPEGKLA 259
Query: 297 D---EIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
+ I K+A I L PN PAQ + P D E+++++ L+ R +
Sbjct: 260 EVREAIDKLARIRLCPNTPAQF--AAIAGLTGPMD-YLEEYMKK-------LKERRDYIY 309
Query: 354 DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413
N + +GA Y FP+I P D + L +L + V G
Sbjct: 310 KRLNEIPGISTTKPQGAFYIFPRIEEGPWK----------DDKEFVLDVLHEAHVLFVHG 359
Query: 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446
SGFG + G H R LP E + M+ F++F
Sbjct: 360 SGFG-EYGAGHFRLVFLPPVEILEEAMDRFEEF 391
|
Length = 398 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-32
Identities = 126/470 (26%), Positives = 194/470 (41%), Gaps = 113/470 (24%)
Query: 18 VQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNV 77
V Y +RG + A L++EG KI+ N+GNP APF + P+
Sbjct: 13 VCYDIRGPVLKEAKRLEEEGHKILKLNIGNP-------------------APFGFEAPDE 53
Query: 78 GIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS-DPELIFLT 136
+ D I L G YSDS+G+ RK + ++ +++ G P D + I++
Sbjct: 54 ILR---DVI----RNLPTAQG----YSDSKGLFSARKAIMQYYQQK-GIPDVDVDDIYIG 101
Query: 137 DGASKGVMQTLNCVIRGEGDGVVL------LF------------HTTWKRQQIGVLIIND 178
+G S+ ++ + ++ GD V++ L+ H +
Sbjct: 102 NGVSELIVMAMQALLN-NGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEE-------AG 153
Query: 179 LQQSVAQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236
+ RSK IT +A+VIINP NPTG S+ L EI+ Q NL++ DE+Y +
Sbjct: 154 WFPDLDDIRSK-ITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDK 212
Query: 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296
+Y D +S + ++ V+F+ +SK Y G R G+ ++ PK
Sbjct: 213 ILY-DGAVHISIA--------SLAPDLLCVTFNGLSKAY-RVAGFRVGWMVLSG--PKKH 260
Query: 297 DEIYK-----IASIALSPNVPAQ--IFMGL----MVNPL-KPGDISYEQFVRESKGILES 344
+ Y +AS+ L NVPAQ I L +N L PG YEQ
Sbjct: 261 AKGYIEGLDMLASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQ----------- 309
Query: 345 LRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLE 404
R RA + N+ V C +GA+Y+FP +L PK D + L LL
Sbjct: 310 -RDRA---WELLNAIPGVSCVKPKGALYAFP--KLDPKVYPIHD------DEQFVLDLLL 357
Query: 405 ATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
+ V G+GF E H R LP +D+ + F+ Y
Sbjct: 358 QEKVLLVQGTGFNWPEPD-HFRIVTLPRVDDLEEAIGRI----GRFLSGY 402
|
Length = 404 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 91/392 (23%), Positives = 151/392 (38%), Gaps = 52/392 (13%)
Query: 74 DPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI 133
DP+V D A +L SG Y+ S G R+ VAE++ + +
Sbjct: 40 DPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDV 99
Query: 134 FLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTWKRQQIGVLIIN---------D 178
LT G S+ + + + G +++ L+ T + V + + D
Sbjct: 100 VLTSGCSQAI-EICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEID 158
Query: 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238
L + A K TV A+V+INP NP G S +L++I + + ++ DE+Y +
Sbjct: 159 LDGLESLADEK--TV-AIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMV 215
Query: 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM---TNIPPKT 295
+ D PF+ M F+ V ++S +SK W G R G+ + I T
Sbjct: 216 FGD-APFIP-------MA-SFASIVPVLSLGGISKR-WVVPGWRLGWIIIHDPHGIFRDT 265
Query: 296 V-DEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354
V + + L P Q G + + L+ + G + L+ A + +
Sbjct: 266 VLQGLKNLLQRILGPATIVQ---GALPDILENTPQEF------FDGKISVLKSNAELCYE 316
Query: 355 GFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414
+VC EGAMY ++ L + K DV +C +L + +PGS
Sbjct: 317 ELKDIPGLVCPKPEGAMYLMVKLEL--ELFPEIKD-----DVDFCEKLAREESVICLPGS 369
Query: 415 GFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446
FG +R TI E + K+F
Sbjct: 370 AFGLPN---WVRITITVPESMLEEACSRIKEF 398
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (228), Expect = 5e-20
Identities = 85/349 (24%), Positives = 145/349 (41%), Gaps = 69/349 (19%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL- 161
Y+ + GIP +R+ +A ++R +G DP + +T GA + + ++ GD V++
Sbjct: 64 YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLD-PGDEVIIPA 122
Query: 162 -FHTTWKRQQI----GVLII------NDLQQSVAQARSKGITVR-AMVIIN-PGNPTGQC 208
+ ++ + + GV + N + +V Q + IT + +I+N P NPTG
Sbjct: 123 PYWVSY-PEMVKLAGGVPVFVPTGEENGFKLTVEQLEAA-ITPKTKALILNSPSNPTGAV 180
Query: 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSF 268
S L I + ++ +L DE+Y++ +Y D F S + ++ ++ + ++
Sbjct: 181 YSPEELEAIADVAVEHDIWVLSDEIYEKLVY-DGAEFTSIASLSPEL-----RD-RTITV 233
Query: 269 HTVSKGY----WGECGQRGGYFEMTNIPPKTV-DEIYKIAS-IALSPNVPAQI-----FM 317
+ SK Y W R GY PK + + K+ S +P AQ
Sbjct: 234 NGFSKAYAMTGW-----RLGYA----AGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALN 284
Query: 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQI 377
G P D V E + E RR +M DG N + C EGA Y FP +
Sbjct: 285 G-------PQD-----EVEEMRQAFE--ERR-DLMVDGLNEIPGLECPKPEGAFYVFPNV 329
Query: 378 RLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLR 426
+ ++ F LLE G++ VPG FG ++R
Sbjct: 330 S------KLLGKSITDSLEF-AEALLEEAGVAVVPGIAFGAPG---YVR 368
|
Length = 393 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 3e-16
Identities = 85/395 (21%), Positives = 136/395 (34%), Gaps = 50/395 (12%)
Query: 69 PFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS 128
+ DP V P D SL SG Y+ + G R+ +A + DG P
Sbjct: 35 KLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDG-PI 93
Query: 129 DPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTWKRQQIGV-----LIIN 177
+ + + L G S + + + G +++ L+ T + I V L
Sbjct: 94 EADDVVLCSGCSHAIEMCIA-ALANAGQNILVPRPGFPLYRTLAESMGIEVKLYNLLPDK 152
Query: 178 DLQQSVAQARS-KGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236
+ + Q S A+V+ NP NP G S +L EIL ++ L ++ DE+Y
Sbjct: 153 SWEIDLKQLESLIDEKTAALVVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGD 212
Query: 237 NIYQDER--PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG---YFEMTNI 291
++ P S S V ++S ++K W G R G + I
Sbjct: 213 MVFSGATFEPVAS-----------LSSNVPILSCGGLAKR-WLVPGWRLGWIIIHDRRGI 260
Query: 292 PPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARM 351
D + K++ L P Q G + + L Y G L L A +
Sbjct: 261 LRDIRDGLVKLSQRILGPCTIVQ---GALPSILLRTPQEYFD------GTLSVLESNAML 311
Query: 352 MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV 411
+ + GAMY I +E DV + RL+ + +
Sbjct: 312 CYGALAAVPGLQPVMPSGAMYMMVGI-----EMEHFPEFKN--DVEFTERLIAEQSVFCL 364
Query: 412 PGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446
PGS F + G F R + M ++F
Sbjct: 365 PGSCF-EYPGFF--RVVLTVPVVMMEEACSRIQEF 396
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 8e-16
Identities = 62/351 (17%), Positives = 120/351 (34%), Gaps = 53/351 (15%)
Query: 95 LTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE 154
L G Y + G+P +R+ +A+F+ R D E + + ++ L ++R
Sbjct: 29 LAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAGANIEALIFLLRLN 88
Query: 155 GDGVVLLFHTTW-------KRQQIGVLII---------NDLQQSVAQARSKGITVRAMVI 198
+L+ T+ + V+ D A + + ++
Sbjct: 89 PGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFHLDFDALEAALKEATEGNKVVLH 148
Query: 199 INPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLP 258
+P NPTG + L ++L + N++LL DE Y ++ + +
Sbjct: 149 TSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALL------- 201
Query: 259 FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMG 318
++ L+ + SK + G G R GY + ++ K+A S
Sbjct: 202 -AEGPNLLVVGSFSKAF-GLAGWRVGY---ILGNAAVISQLRKLARPFYSSTHLQAAAAA 256
Query: 319 LMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR 378
+ E + + + ++ R + DG + + ++ +
Sbjct: 257 AL--------SDPLLVASELEEMRQRIKERRDYLRDGLEAA-GLSVLPSQAGFFLL--TG 305
Query: 379 LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429
L P+A A + LLE G+ PGS FG LR T+
Sbjct: 306 LDPEAALALAQV-----------LLEEVGVYVTPGSSFGGPG---WLRITV 342
|
Length = 357 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 40/286 (13%)
Query: 102 AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161
AYS S+GIP +R+ A++ ++ G +P+ I +T+G S+ ++ + I GD +++
Sbjct: 61 AYSHSQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAILFAMM-AICDPGDEILVP 118
Query: 162 --FHTTWK--RQQIGVLII-------NDLQQSVAQARSKGIT--VRAMVIINPGNPTGQC 208
F+ + GV I+ + K IT +A++I NPGNPTG
Sbjct: 119 EPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGVV 178
Query: 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM-GLPFSKEVQLVS 267
++ L + + +L L+ DEVY++ +Y D + S + + GL E +++
Sbjct: 179 YTKEELEMLAEIAKKHDLFLISDEVYREFVY-DGLKYTS----ALSLEGL----EDRVII 229
Query: 268 FHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQI-FMGLMVNPLKP 326
+VSK Y CG R G N + + K+ LSP QI L+ P
Sbjct: 230 IDSVSKRY-SACGARIGCLISKN--KELIAAAMKLCQARLSPPTLEQIGAAALLDTPE-- 284
Query: 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMY 372
SY VRE E +RR ++ + N VVC +GA Y
Sbjct: 285 ---SYFDEVRE-----EYKKRR-DILYEELNKIPGVVCEKPKGAFY 321
|
Length = 397 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 89/368 (24%), Positives = 157/368 (42%), Gaps = 63/368 (17%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRG---E 154
G +Y+ + G+ +R+E+A+++++R DP I +T GAS Q L+ +R
Sbjct: 49 GYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGAS----QALDVAMRAIINP 104
Query: 155 GDGVV-----------LLFHTTWKRQQIGVLIINDLQQSVAQARSKGITVR--AMVIINP 201
GD V+ L+ + + N+ + AQ + IT + A+++ +P
Sbjct: 105 GDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAA-ITAKTKAILLCSP 163
Query: 202 GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261
NPTG L+++ L EI + +L++L DE+Y + Y + +S + +
Sbjct: 164 NNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFAS--------IKGMR 215
Query: 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIAL--SPNVPAQIFMGL 319
E + + SKG+ G R G+ P + + KI ++ +P + AQ F L
Sbjct: 216 E-RTILISGFSKGF-AMTGWRLGF---IAAPVYFSEAMLKIHQYSMMCAPTM-AQ-FAAL 268
Query: 320 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379
L+ G+ + S R+R FN + C+ GA Y+FP I
Sbjct: 269 --EALRAGNDDVIRMRD-------SYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSI-- 316
Query: 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPA 438
G + F +LL ++ VPGS FG+ EG +R + + E +
Sbjct: 317 --------SSTGLSSEEF-AEQLLLEEKVAVVPGSVFGESGEG--FIRCSYATSLEQLQE 365
Query: 439 IMESFKKF 446
M+ K+F
Sbjct: 366 AMKRMKRF 373
|
Length = 378 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 89/362 (24%), Positives = 137/362 (37%), Gaps = 76/362 (20%)
Query: 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGAS 140
F DA A A G Y+ + GIP +R+ +A ++ R G + PE I +T
Sbjct: 41 FIRDAAAAALA------DGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGV 94
Query: 141 KGVMQTLNCVIRGEGDGVVLLFHTTWKRQQIGVLIINDLQQSVAQARSKGITV------- 193
+ +M ++ G GD VV + W V + AR + +
Sbjct: 95 QALMLAAQALV-GPGDEVVAV-TPLWPN---LVAAP-----KILGARVVCVPLDFGGGGW 144
Query: 194 ---------------RAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238
RA+ I +P NPTG S +LR IL C + L ++ DEVY++
Sbjct: 145 TLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLY 204
Query: 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298
Y S +D+ + +++ ++ SK W G R G+ PP
Sbjct: 205 YAPGGRAPS----FLDI---AEPDDRIIFVNSFSKN-WAMTGWRLGWLVA---PPALGQV 253
Query: 299 IYKIASIALSPNVPAQIFM--GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356
+ K+ S V F+ + L G E FV E + LRR + D
Sbjct: 254 LEKLIEYNTS-CVAQ--FVQRAAVA-ALDEG----EDFVAEL---VARLRRSRDHLVDAL 302
Query: 357 NSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVF-YCLRLLEATGISTVPGSG 415
+ V +GAMY+F +I G V D RL++ G+ PG+
Sbjct: 303 RALPGVEVAKPDGAMYAFFRI------------PG-VTDSLALAKRLVDEAGLGLAPGTA 349
Query: 416 FG 417
FG
Sbjct: 350 FG 351
|
Length = 382 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 4e-14
Identities = 105/430 (24%), Positives = 159/430 (36%), Gaps = 99/430 (23%)
Query: 25 ELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPAD 84
L RA+EL+ G +I +G P T +VA QA
Sbjct: 19 ALLARANELEAAGHDVIHLEIGEPD------FTTAEPIVAAGQA---------------- 56
Query: 85 AIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVM 144
A+A G Y+ +RG+P +R+ +A F +R G DPE I +T G S ++
Sbjct: 57 ALA----------AGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALL 106
Query: 145 QTLNCVIRGEGDGVVL-----------LFHTTWKRQQIGVLIINDLQQSVAQARS--KGI 191
+ ++ G +L L Q + V + Q + A
Sbjct: 107 LASSLLVD-PGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNAD 165
Query: 192 TVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251
TV A+V +P NPTG LS L + + L+ DE+Y Y + V
Sbjct: 166 TVGALVA-SPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASV----- 219
Query: 252 LMDMGLPFSKEVQLV-SFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA-SIALSP 309
L + ++ SF SK Y+G G R G+ PP V E+ K+A ++ +S
Sbjct: 220 -----LEVDDDAFVLNSF---SK-YFGMTGWRLGWLVA---PPAAVPELEKLAQNLYISA 267
Query: 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLR----RRARMMTDGFNSCRNVVCN 365
+ PAQ + F E+ ILE+ R RR + +
Sbjct: 268 STPAQ-------------HAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAV 314
Query: 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVF-YCLRLLEATGISTVPGSGFGQKEGIFH 424
+GA Y + I A D F +C LE ++ PG FG+ + H
Sbjct: 315 EPQGAFYLYADI----SAFGG--------DAFAFCRHFLETEHVAFTPGLDFGRHQAGQH 362
Query: 425 LR---TTILP 431
+R T LP
Sbjct: 363 VRFAYTQSLP 372
|
Length = 387 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 7e-14
Identities = 112/467 (23%), Positives = 184/467 (39%), Gaps = 119/467 (25%)
Query: 18 VQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNV 77
V Y VRG + A+ ++ G I+ N+GNP APF P
Sbjct: 126 VLYDVRGPVVDEANRMEAAGTHILKLNIGNP-------------------APFGFRTP-- 164
Query: 78 GIVFPADAIAR-AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS-DPELIFL 135
D + L+ T G YSDS+G+ RK + ++ + + G P+ D + I+
Sbjct: 165 ------DEVVYDMAQQLTDTEG----YSDSKGLFSARKAIMQYAQLK-GLPNVDVDDIYT 213
Query: 136 TDGASKGVMQTLNCVIRGEGDGVVL------------------LFHTTWKRQQIGVLIIN 177
+G S+ + +++ ++ +GD V++ H Q +
Sbjct: 214 GNGVSELINLSMSALL-DDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQ-------S 265
Query: 178 DLQQSVAQARSKGITVR--AMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235
+ + RSK IT R A+VIINP NPTG L++I+ + L++ DE+Y
Sbjct: 266 EWYPDIDDIRSK-ITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYD 324
Query: 236 QNIYQDERPFVSSKKVLMDMGL------PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289
+++MD GL + ++ V+F +SK + G R G+ ++
Sbjct: 325 --------------RLVMD-GLEHTSIASLAPDLFCVTFSGLSKSHM-IAGYRIGWMILS 368
Query: 290 NIPPKTVDEIYKI---ASIALSPNVPA----QIFMG---LMVNPLKPGDISYEQFVRESK 339
D I + A++ L NVPA Q +G + + L PG YEQ RE
Sbjct: 369 GNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQ--RE-- 424
Query: 340 GILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYC 399
++ + N+ + + A Y FP+I + I D +
Sbjct: 425 -----------LVYNALNAIPGISAVKPKAAFYIFPKIDVKKFNIHD--------DEQFA 465
Query: 400 LRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446
L LL + V G+GF + H R LP ED+ M+ F
Sbjct: 466 LDLLHDKKVLIVQGTGFNWDKPD-HFRVVYLPRLEDLEDAMDRLADF 511
|
Length = 517 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 69.0 bits (168), Expect = 2e-12
Identities = 84/354 (23%), Positives = 149/354 (42%), Gaps = 67/354 (18%)
Query: 95 LTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE 154
L SG +Y GI R+ VA+++ R + PE IFLT G ++G+ + R
Sbjct: 96 LRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPN 155
Query: 155 GDGVV-----------------------LLFHTTWKRQQIGVLIINDLQQSVAQARSKGI 191
+ ++ LL W+ G+ I D + +VA
Sbjct: 156 ANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIAD-ENTVA------- 207
Query: 192 TVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251
MV+INP NP G S +L+++ + ++++ DEVY + I+ D PFVS K
Sbjct: 208 ----MVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN-PFVSMGK- 261
Query: 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI-----ASIA 306
F+ V +++ +SKG W G + G+ + + P+ V E K+ ++
Sbjct: 262 -------FASIVPVLTLAGISKG-WVVPGWKIGWIALND--PEGVFETTKVLQSIKQNLD 311
Query: 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-N 365
++P+ PA I + L+ D ++ F +++K L+ ++ D VVC
Sbjct: 312 VTPD-PATIIQAALPAILEKADKNF--FAKKNK----ILKHNVDLVCDRLKDIPCVVCPK 364
Query: 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK 419
E Y ++ L ++ K D+ +C++L + +PG G K
Sbjct: 365 KPESCTYLLTKLEL--SLMDNIK-----DDIDFCVKLAREENLVFLPGDALGLK 411
|
Length = 462 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL- 161
Y+DS G + +E+ ++ + I T GA G+ L I GD V++
Sbjct: 62 YTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQ-SILDPGDEVIIHE 120
Query: 162 -FHTTWKRQQI----GVLII------NDLQQSVAQARSKGITVR--AMVIINPGNPTGQC 208
+ T +K QI G II + Q +V + + IT + A+++ +P NPTG
Sbjct: 121 PYFTPYK-DQIEMVGGKPIILETYEEDGFQINVKKLEAL-ITSKTKAIILNSPNNPTGAV 178
Query: 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVS 247
S+ L EI + + +L ++ DEVY + + FV
Sbjct: 179 FSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE--DFVP 215
|
Length = 384 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 31/157 (19%)
Query: 114 KEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG---EGDGVVLL------FHT 164
+A + ++R + PE I GV+ ++ IR GDGVV+ F+
Sbjct: 67 AAIAHWFKQRHQWEIKPEWIV----FVPGVVPGISLAIRALTKPGDGVVIQTPVYPPFYN 122
Query: 165 TWKRQQIGVLII-------------NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211
K V+ + L+++ R V+ ++ NP NPTG+ ++
Sbjct: 123 AIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDER-----VKLFILCNPHNPTGRVWTK 177
Query: 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248
LR+I C + + ++ DE++ + + +
Sbjct: 178 EELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFA 214
|
Length = 388 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 103 YSDSRGIPGVRKEVAEFIER-RDGYPS-DPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160
+ D G+ R+ +A F+E+ R G DP+ I LT GA+ + L ++ GD L
Sbjct: 91 FQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGAT-AANELLTFILADPGDA--L 147
Query: 161 LFHTTWK-------RQQIGVLII-------NDLQQSVA-------QARSKGITVRAMVII 199
L T + R + GV I+ N+ Q + +A + I VR ++I
Sbjct: 148 LVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLIT 207
Query: 200 NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256
NP NP G + + L +IL F ++N+ L+ DE+Y +++ FVS +++ G
Sbjct: 208 NPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASE-FVSVAEIVEARG 263
|
Length = 447 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 9e-11
Identities = 92/394 (23%), Positives = 157/394 (39%), Gaps = 80/394 (20%)
Query: 59 PRQVVALCQAPFLLDDPNVGIVFPA-----DAIARAKHYLSLTSGGLGAYSDSRGIPGVR 113
PR V+ L DP+ F DA+A A L SG +YS G+ R
Sbjct: 51 PRPVLPLGHG-----DPSAFPCFRTAPEAEDAVAAA-----LRSGKYNSYSTCVGLLPAR 100
Query: 114 KEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL-----LFHTT--- 165
+ +AE++ R Y + I+LT G ++ + + + V+ G ++L +
Sbjct: 101 RAIAEYLSRDLPYELSTDDIYLTAGCAQAI-EIIMSVLAQPGANILLPRPGYPLYEARAV 159
Query: 166 ----------------WKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209
W+ GV +++A TV AMVIINP NP G
Sbjct: 160 FSGLEVRHFDLLPERGWEVDLEGV-------EALADEN----TV-AMVIINPNNPCGSVY 207
Query: 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269
S +L +I + ++++ DEVY + +PFV MG+ F + +++
Sbjct: 208 SYEHLAKIAETARKLGILVIADEVYDHLTF-GSKPFVP-------MGV-FGEVAPVLTLG 258
Query: 270 TVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNV---PAQIFMGLMVNPLKP 326
++SK W G R G+ + P + E + SI N+ PA G + +
Sbjct: 259 SISK-RWVVPGWRLGWIATCD-PNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIAN 316
Query: 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIE 385
E+F + L L+ A + + + + C + EG+M F ++L +
Sbjct: 317 TK---EEFFTK---TLGLLKETADICYEKIKEIKCITCPHKPEGSM--FVMVKLDLSCLS 368
Query: 386 AAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK 419
K D+ +C +L + + +PGS G K
Sbjct: 369 GIK-----DDMDFCCKLAKEESVVVLPGSALGMK 397
|
Length = 430 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 111/459 (24%), Positives = 180/459 (39%), Gaps = 121/459 (26%)
Query: 30 ASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89
A +L+K G KI + N+G+P A G++ + +++VA + +
Sbjct: 24 AKKLEKLGVKITWENIGDPIAKGEKIPDWMKEIVA-------------------ELVMDD 64
Query: 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIF---LTDGASK--GV 143
K Y Y ++G+ R+ +AE +R G P+ +IF L D +K G+
Sbjct: 65 KSY---------GYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGL 115
Query: 144 MQTLNCVI----------RGE----GDGVV---LLFHTTWKRQQIGVLIINDLQQSVAQA 186
++ VI E G V L W ++DL+ V
Sbjct: 116 LRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPD------LDDLENKVKYN 169
Query: 187 RSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFV 246
S + +++INP NPTG + LREI+ + +L ++ DE+Y +Y ++ V
Sbjct: 170 PS----IAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKT-V 224
Query: 247 SSKKVLMDMGLPFSKEVQLVSFHTVSKGY-WGECGQRGGYFEMTNIPPKTVDEIYK--IA 303
+V+ D V ++ +SK W G R G+ E+ N DE++K I
Sbjct: 225 PLSEVIGD--------VPGIALKGISKELPWP--GSRCGWIEVYN---ADKDEVFKKYIN 271
Query: 304 SI-------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356
SI S +P M P Y+ +++E E +R+ + +
Sbjct: 272 SILNAKMIEVCSTTLPQ------MAIPRIMSHPEYKNYLKERNKRYE---KRSNIAYEKL 322
Query: 357 NSCRNVVCNFTEGAMYS---F------PQIRLP---PKA---IEAAKRAGKVPD---VFY 398
+ N T GA Y F + LP P+ +E + PD V+Y
Sbjct: 323 KDVPGLKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYY 382
Query: 399 CLRLLEATGISTVPGSGF-GQKEGIFHLRTTILPAEEDM 436
LL +TGI VP S F + G R T+L E D
Sbjct: 383 ---LLASTGICVVPLSSFCTELNG---FRVTLL--ERDE 413
|
Length = 433 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-10
Identities = 87/369 (23%), Positives = 149/369 (40%), Gaps = 55/369 (14%)
Query: 74 DPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI 133
DP+ F IA ++ S +Y+ + GI R+ +A+++ Y P+ +
Sbjct: 41 DPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDV 100
Query: 134 FLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTWKRQ-----QIGVLI 175
+LT G + + R E + +LL FH R + G +
Sbjct: 101 YLTLGCKHAAEIIIKVLARPEAN--ILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEV 158
Query: 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235
D +++A + AMVIINPGNP G S +L +I + ++++ DEVY
Sbjct: 159 DLDAVEAIADENTI-----AMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYG 213
Query: 236 QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK- 294
++ +PFV MGL F+ V +++ ++SK W G G+ +T P
Sbjct: 214 HIVF-GSKPFVP-------MGL-FASIVPVITLGSISK-RWMIPGWGLGWL-VTCDPSGL 262
Query: 295 -TVDEIYKIASIALSPN-VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMM 352
+ EI AL+P P + L+ + E F ++ I LR
Sbjct: 263 LQICEIADSIKKALNPAPFPPTFIQAAIPEILEK---TTEDFFSKTINI---LRAALAFC 316
Query: 353 TDGFNSCRNVVC-NFTEGAMYSFPQIRLP-PKAIEAAKRAGKVPDVFYCLRLLEATGIST 410
D ++C EGA ++ ++ L + IE D+ +CL+L + +
Sbjct: 317 YDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIE--------DDMEFCLKLAKEESLII 368
Query: 411 VPGSGFGQK 419
+PG G K
Sbjct: 369 LPGVTVGLK 377
|
Length = 409 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 84/357 (23%), Positives = 142/357 (39%), Gaps = 61/357 (17%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161
Y +GIP + + + + +++ +G + E I +T G++ M + I GD ++L
Sbjct: 61 YQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAI-LAITDPGDEIILN 119
Query: 162 ----FHTTWKRQQIG---VLIINDLQ-----QSVAQARSKGIT--VRAMVIINPGNPTGQ 207
F+ G +L+ D +++ QA IT RA+V I+P NPTG
Sbjct: 120 TPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQA----ITPKTRAIVTISPNNPTGV 175
Query: 208 CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVS 267
EA LR + + C + + + DE Y+ Y + F S + +S
Sbjct: 176 VYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHF--SPGSIPG------SGNHTIS 227
Query: 268 FHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKP 326
+++SK Y G R GY M IP ++ I KI +I + P V +Q + L+
Sbjct: 228 LYSLSKAY-GFASWRIGY--MV-IPIHLLEAIKKIQDTILICPPVVSQY---AALGALQV 280
Query: 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT--EGAMYSFPQIRLPPKAI 384
G +Q + E + + L + + D C GA Y F ++
Sbjct: 281 GKSYCQQHLPEIAQVRQILLKSLGQLQD--------RCTLHPANGAFYCFLKVNTDLNDF 332
Query: 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI--LPAEEDMPAI 439
E K +L+ ++ +PG+ FG K G + LR L I
Sbjct: 333 ELVK------------QLIREYRVAVIPGTTFGMKNGCY-LRIAYGALQKATAKEGI 376
|
Length = 389 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 8e-10
Identities = 65/256 (25%), Positives = 114/256 (44%), Gaps = 30/256 (11%)
Query: 72 LDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE 131
+ DP F +A+ +L S Y+ + G+P R+ +AE++ R Y +
Sbjct: 38 MGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLD 97
Query: 132 LIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTWKRQQIGVLIINDLQQS--- 182
+F+T G ++ + L+ + R G ++L ++ + + V ++ L +
Sbjct: 98 DVFITSGCTQAIDVALSMLAR-PGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWE 156
Query: 183 ----VAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238
+A + TV A+VIINPGNP G S +L++I + ++++ DEVY
Sbjct: 157 VDLDAVEALADQNTV-ALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLA 215
Query: 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN-----IPP 293
+ PFV MG+ F V +++ ++SK W G R G+F T+ P
Sbjct: 216 F-GSNPFVP-------MGV-FGSIVPVLTLGSLSK-RWIVPGWRLGWFVTTDPSGSFRDP 265
Query: 294 KTVDEIYKIASIALSP 309
K V+ I K I P
Sbjct: 266 KIVERIKKYFDILGGP 281
|
Length = 409 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 96/438 (21%), Positives = 145/438 (33%), Gaps = 124/438 (28%)
Query: 25 ELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPAD 84
EL A L++ G+ II +G P T P VV +A A
Sbjct: 17 ELAKEAQALERAGRDIIHMGIGEPD------FTAPEPVV---EA--------------AA 53
Query: 85 AIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVM 144
R G+ Y+ + G+ +R+ +A + RR G PE I +T GAS +
Sbjct: 54 RALRR---------GVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGAS-AAL 103
Query: 145 QTLNCVIRGEGDGV---------------------VLLFHTTWKRQQIGVLIINDLQQSV 183
+ GD V VL+ +R Q+ +
Sbjct: 104 LLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQL----------TA 153
Query: 184 AQARSK-GITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242
A + G R +++ +P NPTG ++ LR I+ + DE+YQ Y D
Sbjct: 154 ADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSY-DA 212
Query: 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN-------IPPKT 295
P VS L +V ++ ++ SK YF MT +P
Sbjct: 213 AP-VS--------ALSLGDDV--ITINSFSK-----------YFNMTGWRLGWLVVPEAL 250
Query: 296 VDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMM-- 352
V K+A ++ + + AQ L F ++ I E RRRA
Sbjct: 251 VGTFEKLAQNLFICASALAQ-HAALAC------------FEPDTLAIYE--RRRAEFKRR 295
Query: 353 ----TDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGI 408
S V +GA Y + R A A +L G+
Sbjct: 296 RDFIVPALESLGFKVPVMPDGAFYVYADCR------GVAHPAAGDSAAL-TQAMLHDAGV 348
Query: 409 STVPGSGFGQKEGIFHLR 426
VPG FG ++R
Sbjct: 349 VLVPGRDFGPHAPRDYIR 366
|
Length = 388 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 28/189 (14%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLLF 162
YS S+GIPG+R+ A + RR G +P+ + SK + I GD V+L
Sbjct: 64 YSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGD-VILCP 122
Query: 163 HTTWKRQQIGVLI----------------INDLQQSVAQARSKGITVRAMVIINPGNPTG 206
+ ++ G ++ L+++V + K I A+++ P NPT
Sbjct: 123 NPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSIPKPI---ALIVNYPSNPTA 179
Query: 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLV 266
++++ F + ++++L D Y + IY D P S +V P +K+V V
Sbjct: 180 YVADLDFYKDVVAFAKKHDIIILSDLAYSE-IYFDGNPPPSVLQV------PGAKDVT-V 231
Query: 267 SFHTVSKGY 275
F ++SK +
Sbjct: 232 EFTSMSKTF 240
|
Length = 405 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-09
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 23/179 (12%)
Query: 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPS--DPELIFLTDGASKGVMQTLNCVIRGEGDG 157
L + D G+P + +AEF+ G DP + LT GA+ +TL + GD
Sbjct: 79 LALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSA-NETLMFCLAEPGDA 137
Query: 158 VVLL--FHTTWKRQ---QIGVLII-------ND-------LQQSVAQARSKGITVRAMVI 198
+L ++ + R + GV I+ N L+++ QA+ + V+ ++I
Sbjct: 138 FLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLI 197
Query: 199 INPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257
NP NP G + L ++ F +N+ L+ DE+Y ++ D FVS +VL D L
Sbjct: 198 TNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVF-DSPGFVSVMEVLKDRKL 255
|
Length = 468 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 58/259 (22%), Positives = 107/259 (41%), Gaps = 51/259 (19%)
Query: 81 FPADAIARAKHYLSLTSGGLGA--YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDG 138
FP +A+ RA + G A Y + G+P +R+ +A ++ R G +PE I +T G
Sbjct: 104 FPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSG 163
Query: 139 ASKGVMQTLNCVIRGEGDGVV------LLFHTTWKRQQ---IGV------LIINDLQQSV 183
A + + L ++ GD V+ + I V + L++++
Sbjct: 164 AQQALDLLLRLLLD-PGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEAL 222
Query: 184 AQARSKGITVRAMVIINP--GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241
AQ + K V + P NPTG +S + +L + +++++ D+ Y + +
Sbjct: 223 AQWKPK------AVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGE--LRY 274
Query: 242 ERPFVSSKKVLMDMGLP-----FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296
+ P K L G FSK T++ G R GY PP+ +
Sbjct: 275 DGPPPPPLKALDAPGRVIYLGSFSK--------TLAPGL------RLGYVVA---PPELI 317
Query: 297 DEIYKIASIA-LSPNVPAQ 314
+++ ++ A L P+ +Q
Sbjct: 318 EKLLRLKQAADLGPSSLSQ 336
|
Length = 459 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 78/340 (22%), Positives = 129/340 (37%), Gaps = 71/340 (20%)
Query: 104 SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161
S G G+R +A R D ++ T G+S+ + L ++R GD VV++
Sbjct: 48 GPSLGGEGLRAAIA----DRWR-GGDAHVVMTTHGSSEAIYLVLTALLR-PGDEVVVVDP 101
Query: 162 -FH-------------TTWKRQQIGVLIINDLQQSVAQARSKGITVR-AMVIIN-PGNPT 205
+H W +L + + + R+ +T R V++N P NPT
Sbjct: 102 AYHSLSHLAVATGCEVRPWP-----LLAVRGFRPDLDALRAL-LTPRTRAVVVNFPHNPT 155
Query: 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQL 265
G ++ L E+L + VLL D + ++ + P + L D +
Sbjct: 156 GASVTPRELDELLERAARSGAVLLWDNAFADLVH--DAPPLPDPSALYDRVI-------- 205
Query: 266 VSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLK 325
SF T+SK + G G R G+ + P + L+ V + + L ++PL
Sbjct: 206 -SFGTLSKAF-GLPGLRVGWC----VGPADL----------LAELVRLRDYTTLSLSPLV 249
Query: 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA-- 383
++ E V + ++ AR N R + A +R P
Sbjct: 250 --ELLAEVAVEHADALIGPRLAEARA-----NRRR-----LLDWAAAHPDVVRCTPPEGG 297
Query: 384 IEAAKRAGKVPDVF-YCLRLLEATGISTVPGSGFGQKEGI 422
+ A R DV C RLL G+ VPGS FG + +
Sbjct: 298 VAAFPRFPGHADVTDLCRRLLARHGVLLVPGSCFGAADRM 337
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 80/344 (23%), Positives = 120/344 (34%), Gaps = 80/344 (23%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKG---VMQTLNCVIRGEGDGVV 159
Y G+P +R+ A R G PE + +T G ++ M TL G GD V+
Sbjct: 63 YGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTL-A---GAGDEVI 118
Query: 160 L----LF-HTTWKRQQ-IGVLII-----NDLQQSVAQARSKGIT--VRAMVIINPGNPTG 206
L F H W I + + L A A + IT RA+ ++ P NPTG
Sbjct: 119 LPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEAL-ITPRTRAIALVTPNNPTG 177
Query: 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKE---- 262
L E+ + + L+ DE Y+ P D+ F+
Sbjct: 178 VVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPH--------DL---FADPDWDD 226
Query: 263 --VQLVSFHTVSKGYWGEC--GQRGGYFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFM 317
V L SF SK Y G R G P + EI K ++A+ QI +
Sbjct: 227 TLVHLYSF---SKSY---ALTGHRVG---AVVASPARIAEIEKFMDTVAICAPRIGQIAV 277
Query: 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF---NSCRNVVCNFTEGAMYSF 374
+ L + ++ E RRR F + GA +++
Sbjct: 278 AWGLPNL-------ADWRAGNR--AEIARRRDA-FRAVFARLPGWELLAS----GAYFAY 323
Query: 375 PQIRLPPKA-IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417
+ P + E A+ RL + GI +PG+ FG
Sbjct: 324 VRHPFPDRPSREVAR------------RLAKEAGILCLPGTMFG 355
|
Length = 386 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 76/359 (21%), Positives = 138/359 (38%), Gaps = 85/359 (23%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK-GVMQTLNCVIRGEGDGVVLL 161
Y G+ R+ VA++ +RR G DPE L+ SK G+ + GD +VL+
Sbjct: 63 YPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV-NPGD-IVLV 120
Query: 162 FHTTWKRQQIGVLI-------------------INDLQQSVAQARSKGITVRAMVIINPG 202
+ +IG L + + + +A ++K M I P
Sbjct: 121 PDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA-KKAKL-----MFINYPN 174
Query: 203 NPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKE 262
NPTG +E++ F + N+++ D Y + + + + + +K+
Sbjct: 175 NPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKA-------PSFLEVDGAKD 227
Query: 263 VQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVN 322
V + FH++SK Y G R G + N + + K+ + NV + +F
Sbjct: 228 VG-IEFHSLSKTY-NMTGWRIG-MAVGN--ADLIAGLGKVKT-----NVDSGVF-----Q 272
Query: 323 PLKPGDI----SYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR 378
++ I + V+E + I +RR ++ + + + +
Sbjct: 273 AIQYAAIAALNGPQDVVKEIRKI---YQRRRDLLLEAL---KKIGIDVE----------- 315
Query: 379 LPPKA---IEAAKRAGKVPDVF----YCLRLLEATGISTVPGSGFGQK-EGIFHLRTTI 429
PKA + VP+ + + RLLE TG+ PG GFG+ EG + T+
Sbjct: 316 -KPKATFYVWV-----PVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIRISLTV 368
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 56/194 (28%)
Query: 84 DAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKG 142
+A+A A + G Y G+ +R+ +A R G D + I +T GA++
Sbjct: 50 EALAYA------MAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEA 103
Query: 143 VMQTLNCVIRGEGDGVVLL---------------------------FHTTWKRQQIGVLI 175
+ + ++R GD V++ F W
Sbjct: 104 LFAAILALVR-PGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDW--------- 153
Query: 176 INDLQQSVAQARSKGITVRA-MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233
Q A A I+ R ++I+N P NP+G S A++R + + ++ +L DEV
Sbjct: 154 -----QRFAAA----ISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEV 204
Query: 234 YQQNIYQDERPFVS 247
Y+ ++ D S
Sbjct: 205 YEHIVF-DGAGHAS 217
|
Length = 386 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 4e-08
Identities = 72/307 (23%), Positives = 134/307 (43%), Gaps = 49/307 (15%)
Query: 100 LGAYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157
+ + D G+ R+ +A F+ + G DPE + ++ GA+ G +T+ + GD
Sbjct: 87 IANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGAT-GANETIMFCLADPGD- 144
Query: 158 VVLL---FHTTWKRQ---QIGV--------------LIINDLQQSVAQARSKGITVRAMV 197
V L+ ++ + R + GV L ++ + +A+ V+ ++
Sbjct: 145 VFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLI 204
Query: 198 IINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257
+ NP NP G L + L ++RF ++N+ L+ DE+Y ++ FVS +V+ D+ +
Sbjct: 205 LTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGG-DFVSVAEVVNDVDI 263
Query: 258 PFSKEVQLVSFHTV---SKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQ 314
EV + H V SK G G R G N V K++S L + Q
Sbjct: 264 ---SEVNVDLIHIVYSLSKDM-GLPGFRVGIVYSFN--DSVVSCARKMSSFGLVSS-QTQ 316
Query: 315 IFMGLMVNPLKPGDISYEQFVRESKGILESLRR---RARMMTDGFNSCRNVVCNFTEGAM 371
+ + M +S +QFV ++ES RR R ++ T G ++ C + +
Sbjct: 317 LMLASM--------LSDDQFV--DNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSNAGL 365
Query: 372 YSFPQIR 378
+++ +R
Sbjct: 366 FAWMDLR 372
|
Length = 496 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 6e-08
Identities = 102/414 (24%), Positives = 154/414 (37%), Gaps = 91/414 (21%)
Query: 29 RASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88
RA EL+ G+ I+ VG P D P D I +
Sbjct: 24 RARELRAAGRSIVDLTVGEPD----------------------FDTP--------DHIKQ 53
Query: 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK----GVM 144
A + G Y+ G P +RK + +ERR+G I + GA + +M
Sbjct: 54 AAV--AAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALM 111
Query: 145 QTLNCVIRGEGDGVVLLFHTTWKRQQIGVL------IINDLQQS-----VAQARSKGITV 193
TL E V++ W VL +I + +A IT
Sbjct: 112 ATL------EAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITP 165
Query: 194 RAM-VIIN-PGNPTGQCLSEANLREI----LRFCYQENLVLLGDEVYQQNIYQDER--PF 245
R +I+N P NPTG S A LR + LR ++++L D++Y + DE
Sbjct: 166 RTRWLILNAPSNPTGAVYSRAELRALADVLLR---HPHVLVLTDDIYDHIRFDDEPTPHL 222
Query: 246 VSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI 305
+++ P ++ LV+ + VSK Y G R GY P + I K+ S
Sbjct: 223 LAA--------APELRDRVLVT-NGVSKTY-AMTGWRIGY---AAGPADLIAAINKLQS- 268
Query: 306 ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365
S + P+ I L GD S FV ES + ++R N+ + C
Sbjct: 269 -QSSSCPSSISQAAAAAALN-GDQS---FVTES---VAVYKQRRDYALALLNAIPGLSCL 320
Query: 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKV--PDVFYCLRLLEATGISTVPGSGFG 417
+GA Y + I GKV D L LL++ G++ V G+ +G
Sbjct: 321 VPDGAFYLYVNC---AGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYG 371
|
Length = 402 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 75/307 (24%), Positives = 123/307 (40%), Gaps = 65/307 (21%)
Query: 41 IFTNVGNPHALGQRPLTFPRQVVALCQ-APFLLDDPNVGIVFPADAIARAKHYLSLTSGG 99
IFT +G L + L Q AP DP + + +ARA G
Sbjct: 18 IFTVIGQ--------LAAQHDALNLSQGAPNFAPDPAL-----VEGVARA------MRDG 58
Query: 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGV 158
Y+ GI +R+ +AE ER G DP + + AS+G+ ++ ++ GD V
Sbjct: 59 HNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVH-PGDEV 117
Query: 159 VLLFHTTWK------RQQIGV-----LIINDLQQSVAQARSKGITVRA-MVIIN-PGNPT 205
+ F ++ R Q L D + + + + IT R M+I+N P NP+
Sbjct: 118 IY-FEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAA-ITPRTRMIIVNTPHNPS 175
Query: 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER-------PFVSSKKVLMDMGLP 258
S A+L + + ++V+L DEVY+ ++ R ++ + V++
Sbjct: 176 ATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVS---S 232
Query: 259 FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQI-F 316
F K S+H G R GY P + +DEI K+ + S + P Q F
Sbjct: 233 FGK-----SYHVT--------GWRVGY---CLAPAELMDEIRKVHQFMVFSADTPMQHAF 276
Query: 317 MGLMVNP 323
+ P
Sbjct: 277 AEALAEP 283
|
Length = 384 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 108/426 (25%), Positives = 165/426 (38%), Gaps = 116/426 (27%)
Query: 70 FLLDDPNVGIVFPADAIARA-KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS 128
F L +P+V P A+ A + GL Y + G P VR+ +AE + RR G P
Sbjct: 38 FSLGNPSVP---PPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPL 94
Query: 129 DPELIFLTDGASKGVMQTLNCVIRG---EGDGVVLL---F--HTTWKRQQIGVLII---- 176
+ I +T GA+ LN ++ GD V++ F + + G L++
Sbjct: 95 TADHIVMTCGAAGA----LNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD 150
Query: 177 -NDLQQSVAQARSKGITVR-AMVIIN-PGNPTGQCLSEANLR---EILRFCYQEN---LV 227
+ Q + A IT + VIIN P NPTG SE L+ +L +E +
Sbjct: 151 TDTFQPDLD-ALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIY 209
Query: 228 LLGDEVYQQNIYQD-ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286
L+ DE Y++ +Y E P++ + +V + S GE R GY
Sbjct: 210 LISDEPYREIVYDGAEVPYI----------FKYYDNSIVVYSFSKSLSLPGE---RIGYI 256
Query: 287 ----EMTNIPPKTVDEIYKIASIALSP------NVPA--QIFMGLMVNPLKPGDIS-YEQ 333
EM + D++ A++ + N PA Q + ++ D+S Y+
Sbjct: 257 AVNPEMED-----ADDLV--AALVFANRILGFVNAPALMQRVVAKCLD--ATVDVSIYK- 306
Query: 334 FVRESKGILESLRRRARMMTDGFNSCRNVVCNFT----EGAMYSFPQIRLPPKAIEAAKR 389
R R ++ DG F +GA Y F PK+ E
Sbjct: 307 ------------RNR-DLLYDGLTE-----LGFECVKPQGAFYLF------PKSPEE--- 339
Query: 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHL-----RTTILPAEEDMPAIMESFK 444
DV +C + + + VPGSGFG G F L TI E +PA F+
Sbjct: 340 ----DDVAFCEKAKK-HNLLLVPGSGFG-CPGYFRLSYCVDTETI---ERSLPA----FE 386
Query: 445 KFNDEF 450
K E+
Sbjct: 387 KLAKEY 392
|
Length = 394 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 41/173 (23%)
Query: 98 GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGD 156
GG+ Y GIP +R +A RR G DP+ + +T GA++ + + ++ GD
Sbjct: 52 GGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLVE-PGD 110
Query: 157 GVVLL--FHTTWKRQQIGVLIINDLQQSVAQARSKGITV----------------RA--- 195
V+L+ ++ ++ +A A + + V RA
Sbjct: 111 EVLLIEPYYDSYA-------------AVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVT 157
Query: 196 ----MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243
+I+N P NPTG L+ A L I + +L+++ DEVY+ ++ R
Sbjct: 158 PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGAR 210
|
Length = 387 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 29/227 (12%)
Query: 194 RAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253
+A+++ NP NP G S ++ +I+R C + L L+ DE+Y ++ F S +
Sbjct: 179 KALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGAT-FTS----VA 233
Query: 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGG---YFEMTNIPPKTVDEIYKIASIALSPN 310
D F V V +K G R G + +D + ++ + P
Sbjct: 234 D----FDTTVPRVILGGTAK-NLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPC 288
Query: 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGA 370
Q + L + + I+ L A ++ + C + G+
Sbjct: 289 SVVQ---AALGEALLNTPQEH------LEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGS 339
Query: 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417
M F RL + K DV + +LLE + +PG F
Sbjct: 340 M--FLMSRLDLEKFRDIKS-----DVEFYEKLLEEENVQVLPGEIFH 379
|
Length = 412 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 102 AYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGDGVVL 160
+Y+ + G+ +RK F++ + PE I +T GAS+ + I G V+L
Sbjct: 60 SYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFR-TILEPGTEVIL 118
Query: 161 LFHTTWKRQQIGVL-----IINDLQQS----VAQARSKGIT--VRAMVIINPGNPTGQCL 209
+ I L + D + + A+A IT R +V+ P NPTG L
Sbjct: 119 PAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTL 178
Query: 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVS 247
S+ L++I +N+ +L DE+Y + +Y E+P S
Sbjct: 179 SKEELQDIADVLKDKNIFVLSDEIYSELVY--EQPHTS 214
|
Length = 387 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGV 158
G Y+ + GIP +R+ +AE+ ++ G D + + +T GA + ++ EGD V
Sbjct: 62 GWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLE-EGDEV 120
Query: 159 VL------LFHTTWKRQQIGVLII-----NDLQQSVAQARSKGITVRA-MVIIN-PGNPT 205
++ + K + + I N+ Q + IT R M++IN P NPT
Sbjct: 121 IIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLEL-ITKRTRMIVINYPNNPT 179
Query: 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243
G L + + I N+ +L DE Y+ +Y+ +
Sbjct: 180 GATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAK 217
|
Length = 391 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 48/216 (22%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS--DPEL-IFLTD 137
F +A+ H GL Y ++G+P +R+ +A ++ERR P+ DPE + +
Sbjct: 45 FVLEALRENLH-------GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVN 97
Query: 138 GASKGVMQTLNCVIRGEGDGVVLL---FHTTWKRQQI--GVLI--------INDLQQSVA 184
G + + VI +V++ F+ QI G + +N ++
Sbjct: 98 GTREALFAFAQAVINPGQAPLVVMPNPFY------QIYEGAALLAGAEPYFLNCTAENGF 151
Query: 185 QARSKGIT------VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238
+ + + + +PGNPTG LS L++++ Q ++ DE Y + +
Sbjct: 152 LPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSE-L 210
Query: 239 YQDE-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSK 273
Y DE P + +G + + + FH++SK
Sbjct: 211 YFDEGNPPAGLLQAAAQLGRDDFR--RCLVFHSLSK 244
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 83/334 (24%), Positives = 139/334 (41%), Gaps = 55/334 (16%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLLF 162
YS SRGIP +R+ ++ + + R DPE + SK + L GD VL+
Sbjct: 63 YSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGD-TVLVP 121
Query: 163 HTTWKRQQIGVLIIN------------DLQQSVAQARSKGITVRAMVIIN-PGNPTGQCL 209
+ ++ G +I D + +A + M+I+ P NPT QC+
Sbjct: 122 NPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCV 181
Query: 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDER-PFVSSKKVLMDMGLPFSKEVQLVSF 268
+++ + +++++ D Y +Y + P + M +P +K+V V F
Sbjct: 182 ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSI--------MQVPGAKDVA-VEF 232
Query: 269 HTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPG 327
T+SK Y G R G F + N P+ V + +I S P Q+ + L+ G
Sbjct: 233 FTLSKSY-NMAGWRIG-FMVGN--PELVSALARIKSYHDYGTFTPLQV---AAIAALE-G 284
Query: 328 DISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA---I 384
D +Q VR+ I E +RR ++ G + +V + +MY + +I P A +
Sbjct: 285 D---QQCVRD---IAEQYKRRRDVLVKGLHEAGWMVEM-PKASMYVWAKIPEPYAAMGSL 337
Query: 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418
E AK +LL + PG GFG
Sbjct: 338 EFAK------------KLLNEAKVCVSPGIGFGD 359
|
Length = 395 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 31/165 (18%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGDG 157
G Y+ G+P + +AE ++ G DPE + +T G ++ + T+ +I GD
Sbjct: 83 GKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI-NPGDE 141
Query: 158 VVLLFHTTWKRQQIGVLIINDLQQSVAQARSKGITV--------------------RAMV 197
V+L F + + + S+A A+ K +T+ RA++
Sbjct: 142 VIL-FAPFYDSYEATL--------SMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAIL 192
Query: 198 IINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242
I P NPTG+ + L I C + +++ DEVY + ++ +
Sbjct: 193 INTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGD 237
|
Length = 413 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 32/200 (16%)
Query: 73 DDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL 132
DDP P D A L G Y G+P +R+ VA R G DPE
Sbjct: 37 DDPG-----PEDVRRAAADALL---DGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPET 88
Query: 133 -IFLTDGASKGVMQTLNCVIRGEGDGVVL---LFHT--TWKRQQIGVLIINDL------- 179
+ +T GA++ + L ++ GD VVL L+ R+ GV + L
Sbjct: 89 EVMVTSGATEALAAALLALVE-PGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRL 147
Query: 180 -QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238
+ ++A A S +A+++ NP NP G+ L + FC + + V + DEV++ +
Sbjct: 148 PRAALAAAFSP--RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVV 205
Query: 239 YQDERPFVSSKKVLMDMGLP 258
+ D R + M LP
Sbjct: 206 F-DGRRHIPL------MTLP 218
|
Length = 387 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 25/163 (15%)
Query: 97 SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP--ELIFLTDGASKGVMQTLNCVIRGE 154
GG+ AY++ RG +R+ +A + G P D ELI +T G + + +
Sbjct: 68 RGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELI-ITPGTQGALFLAVAATV-AR 125
Query: 155 GDGV-------------VLLFHTTWKRQQIGVLIIN-----DLQQSVAQARSKGITVRAM 196
GD V V F Q+ L + DL Q ++ VR
Sbjct: 126 GDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG---VRVF 182
Query: 197 VIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+ NP NP G S + +I + ++ D++Y + +Y
Sbjct: 183 LFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLY 225
|
Length = 405 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 83/363 (22%), Positives = 142/363 (39%), Gaps = 93/363 (25%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK-GVMQTLNCVIRGEGDGVVLL 161
Y G+ RK VA++ +RR G DPE ++ SK G+ + GD VVL+
Sbjct: 65 YPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFV-NPGD-VVLV 122
Query: 162 FHTTWKRQQIGVLI-------------------INDLQQSVAQARSKGITVRAMVIIN-P 201
+ +IG + ++ + + VA+ ++K ++ IN P
Sbjct: 123 PDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAK-KAK------LMFINYP 175
Query: 202 GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261
NPTG E++ F + ++++ D Y + Y +P S +V P +K
Sbjct: 176 NNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKP-PSFLEV------PGAK 228
Query: 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLM- 320
+V + FH++SK Y G R G F + N + + K+ S NV + +F +
Sbjct: 229 DVG-IEFHSLSKTY-NMTGWRIG-FAVGN--ADLIAGLGKVKS-----NVDSGVFQAIQE 278
Query: 321 --VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CRNVVCNFTEGAMYSF 374
+ L + V E + I + R ++ +G
Sbjct: 279 AGIAALNGPQ----EVVEELRKI---YQERRDILVEGLRKLGLEVE-------------- 317
Query: 375 PQIRLPPKA---IEAAKRAGKVPDVF----YCLRLLEATGISTVPGSGFGQK-EGIFHLR 426
PPKA + A VP + + LL+ G+ PG+GFG+ EG F +
Sbjct: 318 -----PPKATFYVWA-----PVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIA 367
Query: 427 TTI 429
T+
Sbjct: 368 LTV 370
|
Length = 385 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 27/141 (19%)
Query: 108 GIPGVRKEVAEFIERRDGYPS-DPELIFLTDGASKGV--MQTLNCVIRGEGDGVVL--LF 162
G P +R+ + ++ RR G DP + G+ + V + TL + G GD VV+ L
Sbjct: 63 GTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGL--GPGDVVVIPELA 120
Query: 163 HTTWKRQQIGVLIINDLQQSVAQARSK--------GITVRAMVIIN-PGNPTGQCLSEAN 213
+ T+ ++G + A A G A++ +N P NPTG+ L +
Sbjct: 121 YPTY---EVGARL--------AGATVVRADSLTELGPQRPALIWLNSPSNPTGRVLGVDH 169
Query: 214 LREILRFCYQENLVLLGDEVY 234
LR+++ + + V+ DE Y
Sbjct: 170 LRKVVAWARERGAVVASDECY 190
|
Length = 364 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232
+ + + +V+ NP NPTG+ + L + L+ DE
Sbjct: 114 PDLDRLPAALEEADLLVVCNPNNPTGRLIPPETLLALAARLRARGGWLVVDE 165
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 30/154 (19%)
Query: 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG---EGDGVVLL------FHTTW 166
V ++ +R G+ DPE I GV+ +L +R G+GV++ F +
Sbjct: 69 VINWLAQRHGWQIDPEWIVFL----PGVVPSLFAAVRALTAPGEGVIVQTPVYPPFLSAV 124
Query: 167 K-----------RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215
K + G DL+ K R +++ +P NP G+ + L
Sbjct: 125 KSNGRELVLNPLKLDPGRYRF-DLEDLEDAITEK---ARLLLLCSPHNPVGRVWTREELT 180
Query: 216 EILRFCYQENLVLLGDEVYQQNIYQDER--PFVS 247
+ C + N+V++ DE++ +Y + P S
Sbjct: 181 RLAELCLRHNVVVVSDEIHADLVYPPNKHIPLAS 214
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 196 MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244
+VI+N P NPTG+ LS L E ++ + + +L+ DE Y + IY++ P
Sbjct: 158 LVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSE-IYENTPP 206
|
Length = 374 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 195 AMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243
+ + NP NPTGQ +S+ +++IL C + N+ L+ DE + + ++E
Sbjct: 144 LVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENET 192
|
Length = 354 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 10/92 (10%)
Query: 195 AMVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253
M+I+N PGNP E +E++ F + N++++ D Y + + +P +
Sbjct: 168 KMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKP-------IS 220
Query: 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285
+ +P +KEV V +++SK Y G R GY
Sbjct: 221 FLSVPGAKEVG-VEINSLSKSY-SLAGSRIGY 250
|
Length = 399 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 463 | |||
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.97 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.97 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.97 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.97 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.97 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.97 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.96 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.96 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.96 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.96 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.96 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.95 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.95 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.95 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.95 | |
| PLN02721 | 353 | threonine aldolase | 99.95 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.95 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.95 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.94 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.94 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.94 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.94 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.94 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.94 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.94 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.94 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.94 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.94 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.93 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.93 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.93 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.93 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.93 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.92 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.92 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.92 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.92 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.92 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.92 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.92 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.92 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.92 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.91 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.91 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.91 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.91 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.91 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.91 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.91 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.91 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.91 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.91 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.9 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.89 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.89 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.89 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.89 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.89 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.89 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.89 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.89 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.89 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.89 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.89 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.89 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.89 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.89 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.88 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.88 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.88 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.88 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.88 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.88 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.88 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.87 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.87 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.87 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.87 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.87 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.87 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.87 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.86 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.86 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.86 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.86 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.86 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.86 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.86 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.85 | |
| PLN02651 | 364 | cysteine desulfurase | 99.85 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.85 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.85 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.84 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.84 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.84 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.84 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.84 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.83 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.83 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.83 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.83 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.83 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.83 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.82 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.82 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.82 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.82 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.81 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.81 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.81 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.81 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.81 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.8 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.8 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.8 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.8 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.8 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.79 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.79 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.79 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.79 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.78 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.78 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.78 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.78 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.78 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.78 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.77 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.77 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.76 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.76 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.76 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.76 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.75 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.75 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.75 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.75 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.74 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.74 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.73 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.73 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.73 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.72 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.72 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.7 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.7 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.7 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.7 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.68 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.68 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.67 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.67 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.66 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.65 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.65 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.65 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.65 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.64 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.64 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.63 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.63 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.63 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.62 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.62 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.62 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.62 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.62 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.61 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.61 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.6 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.6 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.6 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.59 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.58 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.58 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.55 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.54 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.54 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.54 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.54 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.53 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.53 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.53 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.52 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.52 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.51 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.51 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.5 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.5 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.5 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.49 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.49 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.49 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.49 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.49 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.49 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.49 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.48 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.48 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.47 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.47 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.47 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.47 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.47 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.46 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.46 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.44 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.44 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.44 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.44 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.44 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.43 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.42 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.42 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.42 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.42 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.41 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.41 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.41 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.4 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.39 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.39 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.38 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.38 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.35 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.34 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.34 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.33 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.3 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.29 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.29 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.28 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.28 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.28 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.26 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.26 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.26 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.22 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.22 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.21 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.18 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.14 | |
| PLN02263 | 470 | serine decarboxylase | 99.11 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.04 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.04 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.02 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.02 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.0 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 98.99 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.98 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 98.98 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 98.96 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 98.95 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.89 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.88 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.83 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.64 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.56 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.45 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 98.33 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.32 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.22 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 98.22 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 98.08 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 97.99 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.99 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.98 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 97.87 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 97.76 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.7 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 97.46 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.38 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.24 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 97.11 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 96.64 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 94.07 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 86.22 |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-62 Score=502.15 Aligned_cols=447 Identities=52% Similarity=0.908 Sum_probs=374.1
Q ss_pred CCCChhhhhhhhhhccchhhhhHHHHHHHHHH---------hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCC
Q 041151 4 KALDYESMNENVKKVQYAVRGELYLRASELQK---------EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDD 74 (463)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (463)
+.++..++|+++.+++++.++++...++++++ .|.+||+|++|+|+.+|+.+.+++|+++.....|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~ 82 (481)
T PTZ00377 3 KSFTVEDINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLED 82 (481)
T ss_pred CcCCccccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcC
Confidence 34667899999999999999999999999987 457999999999987899999999999999888887765
Q ss_pred CCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC
Q 041151 75 PNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 75 ~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
+.....+|..+++++.+++.........|+++.|.++||++||+|+.+++|+++++++|++|+|+++++..++.+++.+|
T Consensus 83 ~~~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~ 162 (481)
T PTZ00377 83 PSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDP 162 (481)
T ss_pred ccccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCC
Confidence 55556689999999887766533345789999999999999999999999999999999999999999999999996259
Q ss_pred CCEEEEc-------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 155 GDGVVLL-------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 155 gd~Vlvp-------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
||.|+++ .|+++ .+++|++|+ +.|++.+++....+.++|+|+++|||||||.++|.++++
T Consensus 163 gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~ 241 (481)
T PTZ00377 163 SDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQ-EELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVME 241 (481)
T ss_pred CCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCH-HHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHH
Confidence 9999997 66665 345689999 999999986444444689999999999999999999999
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC----CceEEEEecCCcccCCCCCceeEEEEecCC
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK----EVQLVSFHTVSKGYWGECGQRGGYFEMTNI 291 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 291 (463)
+|+++|++|+++||+||+|.++.|+++.++.++..+.+++ +. ..++|+++||||+++++||||+||+++.++
T Consensus 242 ~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l----~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~ 317 (481)
T PTZ00377 242 EIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLEL----PAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNI 317 (481)
T ss_pred HHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhh----cccccCCeEEEEEecCCcccccCCcCceEEEEEeCC
Confidence 9999999999999999999999884334556666554444 33 237999999999844899999999984223
Q ss_pred ChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCcee
Q 041151 292 PPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAM 371 (463)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~ 371 (463)
++++++.+.+.....++++.+.|.++..+++.....++.++.+.++++.+++.|+++++.+.+.|++++|+.+..|+|+|
T Consensus 318 p~~li~~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~ 397 (481)
T PTZ00377 318 PPEVREQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAM 397 (481)
T ss_pred CHHHHHHHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeE
Confidence 78999999887764567899999999999976543455677788888888889999999999999998899999999999
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|+|+++++|..........+..++..++..+++++||.+.||+.|+..++.+++|||++.+++++++++++|++++++++
T Consensus 398 fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~~~~e~l~~~l~rl~~~~~~~~ 477 (481)
T PTZ00377 398 YAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITILPPEEQIEEMVKKIKEFHESFM 477 (481)
T ss_pred EEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 99988877654433222333344666778899999999999999986445679999999777899999999999999999
Q ss_pred HHhc
Q 041151 452 EQYE 455 (463)
Q Consensus 452 ~~~~ 455 (463)
++|+
T Consensus 478 ~~~~ 481 (481)
T PTZ00377 478 KKYG 481 (481)
T ss_pred HhhC
Confidence 9984
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=499.92 Aligned_cols=449 Identities=51% Similarity=0.863 Sum_probs=380.6
Q ss_pred CChhhhhhhhhhccchhhhhHHHHHHHHHHhc---------ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCC
Q 041151 6 LDYESMNENVKKVQYAVRGELYLRASELQKEG---------KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPN 76 (463)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (463)
++...+|+++.+.++.+.+.|...+.++++++ .+||.+++|+|..+|+.|.++.|+++.+++.|+.++.+.
T Consensus 57 ~~~~~~~~~~~~~~y~vrg~~~~~a~~~~~~~~~~~~~~pf~~~~~~nig~p~~~~~~~~~~~r~v~~~~~~p~~i~~~~ 136 (534)
T PLN02231 57 VTLDTINPKVLKCEYAVRGEIVTIAQRLQEELKTNPGSYPFDEILYCNIGNPQSLGQQPITFFREVLALCDHPSLLDKSE 136 (534)
T ss_pred CChhhcCHHHHHhhhhccchHHHHHHHHHHHHhcCCCcCChhhhhhhccCCHHHcCCCccHHHHHHHHhccCCccCCCCC
Confidence 45678999999999999999999999998876 369999999999999999999999999999999987765
Q ss_pred CCCCCcHHHHHHHHHHhhhcC-CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 77 VGIVFPADAIARAKHYLSLTS-GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 77 ~~~~~p~~~~~a~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
....||..+++++.+.+.... .....|+++.|.++||++||+|+.+++|+++++++|++|+|+++++..++.+++..+|
T Consensus 137 ~~~~fp~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~g 216 (534)
T PLN02231 137 THGLFSADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEK 216 (534)
T ss_pred ccccCCHHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCC
Confidence 567789999999988776542 2467899999999999999999998899999999999999999999999999962479
Q ss_pred CEEEEc-------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 156 DGVVLL-------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 156 d~Vlvp-------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
|.|++| +|+++ .+++|++|+ ++|++.+++....+.++|+|+++|||||||.++|.+++++
T Consensus 217 d~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~-~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~ 295 (534)
T PLN02231 217 DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEI-SELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRD 295 (534)
T ss_pred CEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCH-HHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHH
Confidence 999997 66665 234689999 9999999875444446899999999999999999999999
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
|+++|++++++||+||+|.++.|.++.++.++..+..+++.+ ..+.++|+++||||.++|+||+|+||+++++.+++++
T Consensus 296 Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~-~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~ 374 (534)
T PLN02231 296 IVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYG-EKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVR 374 (534)
T ss_pred HHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccc-cCCceEEEEeccCcccccCCccceEEEEEecCCHHHH
Confidence 999999999999999999999984345566777665433110 1234799999999986589999999998532378899
Q ss_pred HHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeee
Q 041151 297 DEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQ 376 (463)
Q Consensus 297 ~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~ 376 (463)
+.+.+......+++.+.|.++..+++.+..+++.|+.+.++.+.+++.|+++++++.+.|++++|+.+..|+|+||+|++
T Consensus 375 ~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p~Ggfylw~~ 454 (534)
T PLN02231 375 EQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKAEGAMYLFPR 454 (534)
T ss_pred HHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeeEEecc
Confidence 99988776556778899999999987654445688888888888999999999999999999889999999999999988
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHHhcc
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 456 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~~~~ 456 (463)
+++|.+.++..+..+..++..++..+++++||.+.||+.|+..++..++|+++..+++++++++++|++++++++++|+|
T Consensus 455 l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit~~~~~e~l~eal~RL~~~~~~~~~~~~~ 534 (534)
T PLN02231 455 IHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVSRLTEFHKSFMDEFRD 534 (534)
T ss_pred ccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88776544443433444566677888999999999999998655667899999988899999999999999999999985
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=459.79 Aligned_cols=362 Identities=26% Similarity=0.433 Sum_probs=309.2
Q ss_pred hccchhhhhHHHHHHHHHHh-c-ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhh
Q 041151 17 KVQYAVRGELYLRASELQKE-G-KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLS 94 (463)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~-~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~ 94 (463)
+..++..+.+...+.+..+. + .++|+|++|+|++ |. |+.+++++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~iG~Pd~------------------------~~-----p~~i~~a~~~a~~ 55 (393)
T COG0436 5 KVLPSYTFAVLAEAKAAAELKGKEDVIDLSIGEPDF------------------------PT-----PEHIIEAAIEALE 55 (393)
T ss_pred ccCcchhHHHHhHHHHHHHhcCCCCEEEeCCCCCCC------------------------CC-----CHHHHHHHHHHHh
Confidence 34455555565533344433 2 4799999999997 55 8999999999888
Q ss_pred hcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCc-EEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------
Q 041151 95 LTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGDGVVLL------------ 161 (463)
Q Consensus 95 ~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------ 161 (463)
.. .. .|.+.+|.++||++|++++.+++|+.+++++ |++|+|+++++..++.+++ +|||+|++|
T Consensus 56 ~~--~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~~-~pGDeVlip~P~Y~~y~~~~~ 131 (393)
T COG0436 56 EG--GT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALL-NPGDEVLIPDPGYPSYEAAVK 131 (393)
T ss_pred cc--cC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCCcCHHHHHH
Confidence 72 22 7779999999999999999999999999886 9999999999999999998 999999997
Q ss_pred -cCcee---c---C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 162 -FHTTW---K---R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 162 -~g~~~---~---~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
.|+++ + . ++|.+|+ +.|++++++ ++|+|++|+||||||.+++++++++|+++|++||++||+||+
T Consensus 132 ~~gg~~v~v~l~~~~~~f~~d~-~~l~~~i~~------ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEi 204 (393)
T COG0436 132 LAGGKPVPVPLDEEENGFKPDL-EDLEAAITP------KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEI 204 (393)
T ss_pred hcCCEEEEEeCCcCccCCcCCH-HHHHhhcCc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehh
Confidence 77776 2 2 5899999 999999998 899999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC-hhHHHHHHhhhh-hcccCCh
Q 041151 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP-PKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 234 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ 311 (463)
|..+.| ++..+.++..+. +..+++|++.||||++ +|+|||+||++ ++ +++++.+.+++. ..++++.
T Consensus 205 Y~~l~y-d~~~~~s~~~~~-------~~~~~~i~i~s~SK~~-~mtGwRvG~~v---~~~~~l~~~~~~~~~~~~~~~~~ 272 (393)
T COG0436 205 YEELVY-DGAEHPSILELA-------GARDRTITINSFSKTY-GMTGWRIGWVV---GPPEELIAALRKLKSYLTSCAPT 272 (393)
T ss_pred hhhccc-CCCCcCCHhhcC-------CCcceEEEEecccccc-cccccceeEee---cChHHHHHHHHHHHHhcccCCCH
Confidence 999999 444566776642 2136899999999999 99999999999 46 889999998876 6779999
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhc
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
+.|.++..+|+... . ....+.+++.|++||+.+.+.|++.+|+.+.. |+|+||+|++++..
T Consensus 273 ~~Q~aa~~aL~~~~-------~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~---------- 334 (393)
T COG0436 273 PAQYAAIAALNGPQ-------S-DEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPEL---------- 334 (393)
T ss_pred HHHHHHHHHhcCcc-------c-hHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCC----------
Confidence 99999999998543 1 23344567899999999999999998899988 89999999777632
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
.++.+++.++|+++||.+.||+.||...|.+++|||++.+.+++++++++++++++++
T Consensus 335 --~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~~~l~~a~~rl~~~~~~~ 392 (393)
T COG0436 335 --LDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSEETLEEALRRLARFLAEY 392 (393)
T ss_pred --CCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHhc
Confidence 2588999999999999999999999855788999999977799999999999988754
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-57 Score=420.19 Aligned_cols=445 Identities=58% Similarity=0.947 Sum_probs=413.4
Q ss_pred CCCCCChhhhhhhhhhccchhhhhHHHHHHHHHHhccc--------ceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCC
Q 041151 2 APKALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLD 73 (463)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (463)
.-+.+++.++|+++.+..+.+.++|.-.+.+++.+.++ ||..++|+|..+||.|.+|+|+++.+|+.|.+++
T Consensus 4 ~~~~lt~~~~N~~V~k~eYAVRG~i~~rA~El~~eL~~~~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p~lLd 83 (475)
T KOG0258|consen 4 SAKALTLDSLNPNVKKAEYAVRGPIVIRADELEKELKKGVKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYPELLD 83 (475)
T ss_pred cccccchhhcChhhhhhhhhhccchhhhHHHHHHHHHhcccCChHHHHhhcCCCHHHhCCCChhHHHHHHHHhcChhhcC
Confidence 45678899999999999999999999999999987665 9999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC
Q 041151 74 DPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 74 ~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~ 153 (463)
.|. ||.++++++...+...++....|+.++|.+-+|+.+|+|+.++.|++.+|++|++|.|++.++..++..++..
T Consensus 84 ~~~----fp~Dai~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~ 159 (475)
T KOG0258|consen 84 SPE----FPTDAIKRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAG 159 (475)
T ss_pred CCC----CCHHHHHHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcC
Confidence 887 6999999999999998778899999999999999999999999999999999999999999999999999867
Q ss_pred CCCEEEEc-------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 154 EGDGVVLL-------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 154 ~gd~Vlvp-------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
+.+.|++| +|+.. .+.+|++|. ++|++.+++.. ++-+++++++.||.||||.++|++.+
T Consensus 160 ~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~-~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~i 237 (475)
T KOG0258|consen 160 KKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDV-AELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENI 237 (475)
T ss_pred CCCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCH-HHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHH
Confidence 88999998 34333 678999999 99999999876 56689999999999999999999999
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|+.+|.+++++++.||+|.+-.|.++.++.|+..++.+||.+..+...++.++|.||.+.|-.|.|.||+-+.+-+++
T Consensus 238 e~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~pr 317 (475)
T KOG0258|consen 238 EGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPR 317 (475)
T ss_pred HHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChh
Confidence 99999999999999999999999997777899999999999666555678899999999998999999999988777888
Q ss_pred HHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEe
Q 041151 295 TVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSF 374 (463)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~ 374 (463)
..+.+.+..+...+++...|..+-..++.+..++.+|+.+.++.+.+.+.++++.+.+.+.+++++|+.+.+++|.+|+|
T Consensus 318 v~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~f 397 (475)
T KOG0258|consen 318 VKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLF 397 (475)
T ss_pred HHHHHHHHHhhhhcCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeec
Confidence 99999888887889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
.++.+|.+.+.+++..+..+|.-.|.+||+..||.++||+.||..+|..++|.++-... + ..+++++++-.+++++|
T Consensus 398 P~i~lP~kaie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~TiLp~~--~-~~i~~~~~fH~~f~~~Y 474 (475)
T KOG0258|consen 398 PQISLPPKAIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTILPPG--L-EIIEKFKKFHAEFMDEY 474 (475)
T ss_pred ccccCCHHHHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEeecCch--h-HHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999653 5 99999999999999987
Q ss_pred c
Q 041151 455 E 455 (463)
Q Consensus 455 ~ 455 (463)
+
T Consensus 475 ~ 475 (475)
T KOG0258|consen 475 R 475 (475)
T ss_pred C
Confidence 5
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-55 Score=436.94 Aligned_cols=383 Identities=89% Similarity=1.375 Sum_probs=316.0
Q ss_pred CCCCCCChhhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCC
Q 041151 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIV 80 (463)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (463)
|.-+.++...+|+++.+++++.++.+...+++++++|.++|+|++|+|++.|+.|.+|.|+++.++++++....|.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 80 (407)
T PLN02368 1 MSLKALDYESLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLL 80 (407)
T ss_pred CCCCCCChhhcCHHHHhhhhhcCCHHHHHHHHHHHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCcccccc
Confidence 55567788899999999999999999999999999999999999999999999999999999999999998876642234
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
+|+..+.++...+........+|+++.|.++||++||+|+.+++|+.+++++|++|+|+++++..++.+++.+|||.|++
T Consensus 81 ~p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli 160 (407)
T PLN02368 81 FPADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLV 160 (407)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEE
Confidence 56677777665543211246789999999999999999999888999999999999999999999999985359999999
Q ss_pred c-------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L-------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p-------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
| .|+++ .+++|++|+ +.|++.+++....+.++|+|+++|||||||.++|.+++++|+++|
T Consensus 161 ~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~-~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a 239 (407)
T PLN02368 161 PVPQYPLYSATISLLGGTLVPYYLEESENWGLDV-NNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFC 239 (407)
T ss_pred eCCCCccHHHHHHHcCCEEEEEecccccCCCCCH-HHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHH
Confidence 7 66665 234689999 999999975322233689999999999999999999999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
++|+++||+||+|.++.|++..++.++..+..++.-+..+.+++|+++||||+|+|+||||+||+++.++++++++.+.+
T Consensus 240 ~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~ 319 (407)
T PLN02368 240 YQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYK 319 (407)
T ss_pred HHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHH
Confidence 99999999999999999843234556665543330000234589999999999746999999999843337889999988
Q ss_pred hhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCCh
Q 041151 302 IASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP 381 (463)
Q Consensus 302 ~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~ 381 (463)
.....++++.+.|.++..+++....++..+..+.++++++++.|++|++++.+.|+++||+.+..|+|+||+|+++.+|.
T Consensus 320 ~~~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~lp~ 399 (407)
T PLN02368 320 VASIALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIKLPP 399 (407)
T ss_pred HhcccCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCCCCH
Confidence 75446788999999999999754323345556667767789999999999999999999999999999999999999987
Q ss_pred hhH
Q 041151 382 KAI 384 (463)
Q Consensus 382 ~~~ 384 (463)
+.+
T Consensus 400 ~~~ 402 (407)
T PLN02368 400 KAI 402 (407)
T ss_pred HHH
Confidence 643
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=433.55 Aligned_cols=376 Identities=23% Similarity=0.386 Sum_probs=306.2
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+|+++.+++++.++.+...++++++.|+++|+|+.|+|+.++. +. |+.+++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~---------------------~~-----p~~~~~~~ 171 (517)
T PRK13355 118 KKSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGF---------------------RT-----PDEVVYDM 171 (517)
T ss_pred ChhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCC---------------------CC-----CHHHHHHH
Confidence 47999999999999999999999998999999999999973221 32 88899999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+++.. ..+|+++.|.++||++||+|+..+++..+++++|++|+|+++++..++.+++ ++||+|++|
T Consensus 172 ~~~~~~----~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~-~~Gd~Vli~~P~y~~y~ 246 (517)
T PRK13355 172 AQQLTD----TEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALL-DDGDEVLIPSPDYPLWT 246 (517)
T ss_pred HHHhhc----CCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhC-CCCCEEEEcCCCCcCHH
Confidence 887654 3579999999999999999998776667899999999999999999999998 999999997
Q ss_pred -----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ .+.+|.+|+ +.+++.+.+ ++|+|+++|||||||.+++.+++++|+++|++|+++||+
T Consensus 247 ~~~~~~g~~~v~~~~~~~~~~~~d~-~~l~~~~~~------~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~ 319 (517)
T PRK13355 247 ACVNLAGGTAVHYRCDEQSEWYPDI-DDIRSKITS------RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFS 319 (517)
T ss_pred HHHHHCCCEEEEeecCcccCCCCCH-HHHHHhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 66665 234688999 999998876 899999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh----HHHHHHhhhhhc
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK----TVDEIYKIASIA 306 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~l~~~~~~~ 306 (463)
||+|.++.| ++..+.++..+ ..+..+|+++||||+| ++||||+||++++ ++++ +++.+.......
T Consensus 320 DE~Y~~~~~-~~~~~~s~~~~--------~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~-~~~~~~~~~~~~l~~~~~~~ 388 (517)
T PRK13355 320 DEIYDRLVM-DGLEHTSIASL--------APDLFCVTFSGLSKSH-MIAGYRIGWMILS-GNKRIAKDYIEGLNMLANMR 388 (517)
T ss_pred ehhhhhhcC-CCCCcccHHHh--------CCCCeEEEEecchhhc-cCcccceEEEEee-CchhhHHHHHHHHHHHhcCc
Confidence 999999988 44455676655 3334688899999999 9999999999853 1343 344454444444
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHH
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEA 386 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~ 386 (463)
.+++.+.|.++..+|... ..+..+.. ..+ ++.++++++.+.|+++||+.+..|+|+||+|++++...
T Consensus 389 ~~~~~~~q~a~~~aL~~~----~~~~~~~~---~~~-~~~~~r~~l~~~L~~~~g~~~~~p~g~fy~~~~l~~~~----- 455 (517)
T PRK13355 389 LCSNVPAQSIVQTALGGH----QSVKDYLV---PGG-RVYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKK----- 455 (517)
T ss_pred CCcChHHHHHHHHHhcCC----ccHHHHHH---HHH-HHHHHHHHHHHHHhcCCCcccCCCCeeeEEEeecCccc-----
Confidence 678899999999998531 22333433 233 34456799999999988999999999999997664211
Q ss_pred HhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 387 AKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.++.++.+++..+|+++||.|.||+.|+. .+.+++||+++.++++|++++++|++++++++
T Consensus 456 ---~~~~~~~~~~~~ll~~~gV~v~pg~~F~~-~~~~~~Ris~~~~~~~l~~a~~rl~~~~~~~~ 516 (517)
T PRK13355 456 ---FNIHDDEQFALDLLHDKKVLIVQGTGFNW-DKPDHFRVVYLPRLEDLEDAMDRLADFFSYYR 516 (517)
T ss_pred ---CCCCCHHHHHHHHHHhCCEEEeCcchhCC-CCcCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 01224667788899999999999999975 35569999999888999999999999987653
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=408.29 Aligned_cols=377 Identities=20% Similarity=0.286 Sum_probs=317.3
Q ss_pred ChhhhhhhhhhccchhhhhHHHHHHHHHHhccccee-ccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHH
Q 041151 7 DYESMNENVKKVQYAVRGELYLRASELQKEGKKIIF-TNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADA 85 (463)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 85 (463)
.+...+.++...+++++.++.+.+.|.. +.+ |+.|.|++ |. |+.+
T Consensus 4 ~~~~~~~~l~~~~~~vw~e~~~la~e~~-----~~~~LgqGfp~~------------------------~~-----P~fv 49 (420)
T KOG0257|consen 4 FKRLRNRNLSTSKPYVWTEINRLAAEHK-----VPNPLGQGFPDF------------------------PP-----PKFV 49 (420)
T ss_pred ccccccccccccCCcHHHHHHHHHHhcC-----CCCcccCCCCCC------------------------CC-----cHHH
Confidence 3445577888888888888877665544 234 99999997 65 8999
Q ss_pred HHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---
Q 041151 86 IARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL--- 161 (463)
Q Consensus 86 ~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--- 161 (463)
.+++++++.. ...++|.+..|+++|+++|++.+.+.||....++ +|+||+|+.++|..++++++ ++||+|++.
T Consensus 50 ~ea~~~~~~~--~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~-~~GDeVii~eP~ 126 (420)
T KOG0257|consen 50 TEAAKNAAKE--PSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL-NPGDEVIVFEPF 126 (420)
T ss_pred HHHHHHHhcc--chhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-CCCCEEEEecCc
Confidence 9999999887 3678999999999999999999999898877666 79999999999999999998 999999995
Q ss_pred ----------cCcee------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 162 ----------FHTTW------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 162 ----------~g~~~------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
+|+++ ....|.+|+ +.|+.++++ +||+|++|+||||||.++|+++|++|++
T Consensus 127 fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~-~~le~~~t~------kTk~Ii~ntPhNPtGkvfsReeLe~ia~ 199 (420)
T KOG0257|consen 127 FDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDP-EELESKITE------KTKAIILNTPHNPTGKVFSREELERIAE 199 (420)
T ss_pred chhhhhHHhhcCCcceeeccccccccccCccccCCh-HHHHhhccC------CccEEEEeCCCCCcCcccCHHHHHHHHH
Confidence 66665 356899999 999999999 9999999999999999999999999999
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|++||++||.||+|..+.| ++..+.+++.+ |+| .+ ++|.++|+||+| |++|||+||++ +++.++..+
T Consensus 200 l~~k~~~lvisDevYe~~v~-d~~~h~r~asl-Pgm----~e--rtitvgS~gKtf-~~TGWrlGW~i---gp~~L~~~~ 267 (420)
T KOG0257|consen 200 LCKKHGLLVISDEVYEWLVY-DGNKHIRIASL-PGM----YE--RTITVGSFGKTF-GVTGWRLGWAI---GPKHLYSAL 267 (420)
T ss_pred HHHHCCEEEEEhhHhHHHhh-CCCcceeeecC-Cch----hh--eEEEecccccee-eeeeeeeeeee---chHHhhhhH
Confidence 99999999999999999999 56667777776 887 44 899999999999 99999999999 799999999
Q ss_pred Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeee
Q 041151 300 YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE--QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQ 376 (463)
Q Consensus 300 ~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~ 376 (463)
..+++ ..+.++.+.|.|.+++++... ... .......++.+.|+++|+.|.+.|.++ |+++..|+|+||+|++
T Consensus 268 ~~vh~~~~~~~~Tp~q~A~a~a~~~~~----~~~~p~~~y~~~~~~~~y~~krdil~k~L~~l-g~~v~~p~gayyl~ad 342 (420)
T KOG0257|consen 268 FPVHQNFVFTCPTPIQEASAAAFALEL----ACLQPGGSYFITELVKEYKEKRDILAKALEEL-GLKVTGPEGAYYLWAD 342 (420)
T ss_pred HHHhhccccccCcHHHHHHHHHHhhhh----hccCCcchhHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCceEEEEe
Confidence 98886 678899999999988876432 100 001234457889999999999999999 9999999999999999
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC----CcEEEEEecCCcCcHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG----IFHLRTTILPAEEDMPAIMESFK 444 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~----~~~lRis~~~~~e~i~~~~~~l~ 444 (463)
+.++..+-.........++-.++..++++.|+.+.|++.|+..+. .+++|+++..+++.++.++++|+
T Consensus 343 fs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~~~k~~~~L~~a~e~l~ 414 (420)
T KOG0257|consen 343 FSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFCFCKADETLRKAIERLK 414 (420)
T ss_pred ccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 885544322222333446778888999999999999999997532 45789999988899999998887
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=376.80 Aligned_cols=372 Identities=22% Similarity=0.298 Sum_probs=315.8
Q ss_pred hccchhhhhHHHHHHHHHHhc--ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhh
Q 041151 17 KVQYAVRGELYLRASELQKEG--KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLS 94 (463)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~ 94 (463)
+...-++|.+........... +++|.++.|+|+.++- ++. .+.+.+|+.+++.
T Consensus 38 ka~~~tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~--------------------~~t-----s~~a~~Av~~al~ 92 (447)
T KOG0259|consen 38 KAASVTIRGILSALFDCCDPEKKKPILPLGHGDPSVYPC--------------------FRT-----SQEAEQAVVDALR 92 (447)
T ss_pred hhccccHHHHHHHHhhcCCcccCceeccCCCCCCCcccc--------------------ccC-----CHHHHHHHHHHHh
Confidence 344555666665554444333 4799999999997442 233 6788889999988
Q ss_pred hcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------
Q 041151 95 LTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------- 161 (463)
Q Consensus 95 ~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------- 161 (463)
+ +..++|+|+.|....|+++|+|++++....+++++|++|+|++|||..++.+|. +||..|++|
T Consensus 93 S--gk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA-~p~aNILlPrPGfp~Y~~~a~~ 169 (447)
T KOG0259|consen 93 S--GKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA-NPGANILLPRPGFPLYDTRAIY 169 (447)
T ss_pred c--CCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhc-CCCCceecCCCCCchHHHhhhh
Confidence 7 578899999999999999999998887788999999999999999999999999 999999998
Q ss_pred cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccc
Q 041151 162 FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235 (463)
Q Consensus 162 ~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~ 235 (463)
.|.++ ++.+|.+|+ +.+|..+.+ +|.+|+++|||||+|.++|.+.|++|++.|+++++.||.||+|.
T Consensus 170 ~~lEVR~ydlLPe~~weIDL-~~veal~DE------NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~ 242 (447)
T KOG0259|consen 170 SGLEVRYYDLLPEKDWEIDL-DGVEALADE------NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYG 242 (447)
T ss_pred cCceeEeecccCcccceech-HHHHHhhcc------CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcc
Confidence 45554 899999999 999999998 89999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC-----CChhHHHHHHhhhhhcccCC
Q 041151 236 QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN-----IPPKTVDEIYKIASIALSPN 310 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 310 (463)
++.| ++.++.++..+ .....+|.++|+||-| =.||||+||+++-+ .+..+++.+.+..+...+++
T Consensus 243 ~~vf-g~~pfvpmg~f--------ssiVPVitlggisKrW-~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~ 312 (447)
T KOG0259|consen 243 HTVF-GDKPFVPMGKF--------SSIVPVITLGGISKRW-IVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPA 312 (447)
T ss_pred eeec-CCCCccchhhc--------cccCceEeeccccccc-ccCCceeeeEEEecccccccchHHHHHHHHHHhccCCcc
Confidence 9999 67888887766 5566899999999999 79999999999843 12245577777777788999
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCceeEEeeeccCChhhHHHHhh
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
.+.|.|+-.+|+... + +........++.+.+..++.|+++|++. ...|+|.+|+|+.+++.. +
T Consensus 313 TiiQ~AlP~IL~kTp---~------efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~-------~ 376 (447)
T KOG0259|consen 313 TIIQGALPDILEKTP---E------EFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSL-------F 376 (447)
T ss_pred HhHHHHhHHHHHhCh---H------HHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhh-------h
Confidence 999999999987432 1 2234567789999999999999999998 578999999997765331 2
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
..+++|.+|+.++.+|+.+.+.||..|+.+ +|+|+++....+.+++++.||+.|+.++.+
T Consensus 377 ~~~~dD~dFc~kL~~Eesv~~LPG~af~~~---nw~Ri~i~~~~~~leea~~Rik~Fc~RH~~ 436 (447)
T KOG0259|consen 377 PDIEDDVDFCQKLAREESVICLPGQAFGLK---NWLRIVITVEEEMLEEAFSRIKEFCDRHSK 436 (447)
T ss_pred ccccccHHHHHHHhhhcceEEeccccccCC---CeEEEEEccChHHHHHHHHHHHHHHHhhhh
Confidence 246789999999999999999999999974 399999998889999999999999999873
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=408.83 Aligned_cols=364 Identities=21% Similarity=0.312 Sum_probs=293.5
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..++.+.+..+...+++.+..|+++|+|+.|+|++ +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~~ 53 (388)
T PRK07366 3 FAQRLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSSDL------------------------PA-----PAHALEAIA 53 (388)
T ss_pred hhhhhhcCCccHHHHHHHHHHHHHhcCCCeEEeCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 5778888888888888788888888899999999999885 43 778888888
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.. ....+|+++.|.++||+++|+|+.+.+|+.++++ +|++|+|+++++..++.+++ +|||.|+++
T Consensus 54 ~~~~~--~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~ 130 (388)
T PRK07366 54 QSLHD--PSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVL-NPGDFALLLDPGYPSHA 130 (388)
T ss_pred HHHhC--cccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchH
Confidence 77654 2456899999999999999999998899999998 79999999999999999998 899999997
Q ss_pred -----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ .+.++.+|+ +++++.+.. ++|+|++|+||||||.++|.+++++|+++|++|+++||+
T Consensus 131 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~~~~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 203 (388)
T PRK07366 131 GGVYLAGGQIYPMPLRAENDFLPVF-ADIPTEVLA------QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVH 203 (388)
T ss_pred HHHHhcCCEEEEEECCCccCCCCCH-HHHHHhhcc------cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEE
Confidence 66666 234577888 999887765 789999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.|++.....++..+. ....++|+++||||+| |+||+|+||++ +++++++.+.+... ...+.
T Consensus 204 De~Y~~~~~~~~~~~~~~~~~~-------~~~~~vi~~~SfSK~~-g~~GlRiG~~v---~~~~li~~l~~~~~~~~~~~ 272 (388)
T PRK07366 204 DFPYVDLVFDGEVEPPSILQAD-------PEKSVSIEFFTLSKSY-NMGGFRIGFAI---GNAQLIQALRQVKAVVDFNQ 272 (388)
T ss_pred ecchhhcccCCCCCCCChhhCC-------CCcccEEEEeeccccc-CCcchhheehc---CCHHHHHHHHHHHhhcccCC
Confidence 9999999883222244554431 1224689999999999 99999999999 69999999988876 34444
Q ss_pred Ch-HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 310 NV-PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 310 ~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
+. +.|.++..+.. ..++.+++++.|+++++.+.+.|+++ |+.+..|+|++|+|++++ ...
T Consensus 273 ~~~~~~~a~~~l~~-----------~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~~~--~~~----- 333 (388)
T PRK07366 273 YRGILNGAIAALTG-----------PQATVQQTVQIFRQRRDAFINALHQI-GWPVPLPEATMYVWAKLP--EPW----- 333 (388)
T ss_pred CHHHHHHHHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECC--ccc-----
Confidence 33 34444444322 12445678899999999999999988 888788999999996654 210
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
..++.+++..+++++||.+.||+.|+.. +.+|+||+++.+++++++++++|++++
T Consensus 334 ---~~~~~~~~~~l~~~~gv~v~pg~~f~~~-~~~~iRi~~~~~~~~l~~~l~rl~~~l 388 (388)
T PRK07366 334 ---QGNSVEFCTQLVAQTGVAASPGSGFGKS-GEGYVRFALVHDPDILEEAVERIAAFL 388 (388)
T ss_pred ---CCCHHHHHHHHHHhCCEEEeCchHhCcC-CCCeEEEEecCCHHHHHHHHHHHHHhC
Confidence 0124566677778899999999999752 446999999977899999999998763
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=411.26 Aligned_cols=372 Identities=22% Similarity=0.319 Sum_probs=289.2
Q ss_pred hhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCC
Q 041151 22 VRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLG 101 (463)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~ 101 (463)
.++.+...+++.+..|+++++|++|+|+.++. +. |+.+.+++.+.+.. ....
T Consensus 16 ~~~~~~~~~~~~~~~g~~~~~~~~G~p~~~~~---------------------~~-----p~~~~~a~~~~~~~--~~~~ 67 (433)
T PRK06855 16 EIRNIVAVAKKLEKLGVKITWENIGDPIAKGE---------------------KI-----PDWMKEIVAELVMD--DKSY 67 (433)
T ss_pred HHHHHHHHHHHHHhccccccccccCCCcccCC---------------------CC-----CHHHHHHHHHHhhc--CCCC
Confidence 45556666777777788999999999963111 32 77788787776654 2557
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCcee-
Q 041151 102 AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHTTW- 166 (463)
Q Consensus 102 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~~~- 166 (463)
+|++..|.++||+++++|+.+++|+.+++++|++|+|++++|..++. ++ +|||.|+++ .|+++
T Consensus 68 ~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l~-~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v 145 (433)
T PRK06855 68 GYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-LL-RREARVIGPSPAYSTHSSAEAAHAGYPPV 145 (433)
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-hc-CCCCeEEEeCCCCchHHHHHHHhcCCeEE
Confidence 89999999999999999999889999999999999999999999985 66 899999997 24443
Q ss_pred -----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 167 -----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 167 -----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
..++|++|+ ++|++.++.. ++++++++++||||||.++|.+++++|+++|++||++||+||+|.++.| +
T Consensus 146 ~v~~~~~~~~~~d~-~~l~~~~~~~----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~-~ 219 (433)
T PRK06855 146 TYRLDPENNWYPDL-DDLENKVKYN----PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVY-N 219 (433)
T ss_pred EEecccccCCCCCH-HHHHHHHhcC----CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccccc-C
Confidence 235688999 9999998731 1579999999999999999999999999999999999999999999988 4
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC--Ch---hHHHHHHhhhhhcccCChHHHHH
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI--PP---KTVDEIYKIASIALSPNVPAQIF 316 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~--~~---~~~~~l~~~~~~~~~~~~~~q~~ 316 (463)
+.++.++..+ ..+.++|+++||||+| ++||+|+||+++++. ++ ++++.+........+++.+.|.+
T Consensus 220 ~~~~~sl~~~--------~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a 290 (433)
T PRK06855 220 GKKTVPLSEV--------IGDVPGIALKGISKEL-PWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMA 290 (433)
T ss_pred CCCCCCHHHH--------cCcCCeEEEecCcccc-CCCcceEEEEEEeCCchhhHHHHHHHHHHHhhccccCCChHHHHH
Confidence 4445566655 2223579999999999 899999999996321 12 22333333332245678999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhH--------H---
Q 041151 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAI--------E--- 385 (463)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~--------~--- 385 (463)
+..++++. .++ ++.+++++.|+++++.+.+.|++++|+.+..|+|+||+|++++ .... +
T Consensus 291 ~~~~l~~~-----~~~---~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~w~~l~--~~~~~~~~~~~~~~~~ 360 (433)
T PRK06855 291 IPRIMSHP-----EYK---NYLKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFE--DGVLNNKQSLPIENPE 360 (433)
T ss_pred HHHhhcCC-----cHH---HHHHHHHHHHHHHHHHHHHHHhcCCCeeccCCCeeEEEeeccc--cccccccccCCcchhh
Confidence 99999743 233 3455678899999999999999888888899999999996654 2210 0
Q ss_pred --H-H---hhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 386 --A-A---KRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 386 --~-~---~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
. . ...+..++.+++..+++++||.+.||+.|+.. + .++|||++ .++++|++++++|++++++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~-~-~~~Rls~~~~~~~~i~~~~~~l~~~~~~~ 430 (433)
T PRK06855 361 VKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE-L-NGFRVTLLERDEEKFEWIYQTLAEKIEEY 430 (433)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC-C-CceEEEECCCcHHHHHHHHHHHHHHHHHH
Confidence 0 0 00001236677888899999999999999752 3 35999999 68999999999999998753
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=410.37 Aligned_cols=360 Identities=19% Similarity=0.317 Sum_probs=300.5
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++.+++.+.++.+...+. +.++|+|+.|.|+. +. |+.+.+++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~P~~------------------------~~-----~~~~~~~~ 76 (413)
T PLN00175 31 QVAKRLEKFKTTIFTQMSSLAI-----KHGAINLGQGFPNF------------------------DG-----PDFVKEAA 76 (413)
T ss_pred chhHHhhcCCCCHHHHHHHHhh-----cCCeEecCCCCCCC------------------------CC-----CHHHHHHH
Confidence 3678888889988877765542 34799999999995 33 77788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+++.. ....|++..|.++||+++++++.+++|++++++ +|++|+|+++++..++.+++ +|||+|+++
T Consensus 77 ~~~~~~---~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~ 152 (413)
T PLN00175 77 IQAIRD---GKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLI-NPGDEVILFAPFYDSY 152 (413)
T ss_pred HHHHhc---CCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHhC-CCCCEEEEeCCCchhH
Confidence 877765 347899999999999999999999999999998 79999999999999999998 999999997
Q ss_pred ------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 ------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 ------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ ..+++.+|+ +.|++.+.+ ++|+|++++||||||.++|.+++++|+++|++|+++||+
T Consensus 153 ~~~~~~~g~~~~~v~~~~~~~~~~~-~~l~~~~~~------~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 153 EATLSMAGAKIKTVTLRPPDFAVPE-DELKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFT 225 (413)
T ss_pred HHHHHHcCCEEEEEECCcccCCCCH-HHHHHhcCc------CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEE
Confidence 56665 223588999 999999876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.|+ + .+.++..+. ...+++|+++||||.| ++||+|+||++ +++++++.+.+... ..+++
T Consensus 226 De~Y~~l~~~-~-~~~s~~~~~-------~~~~~vi~i~SfSK~~-~~~G~RiG~~v---~~~~l~~~l~~~~~~~~~~~ 292 (413)
T PLN00175 226 DEVYDKLAFE-G-DHISMASLP-------GMYERTVTMNSLGKTF-SLTGWKIGWAI---APPHLTWGVRQAHSFLTFAT 292 (413)
T ss_pred ecccCccccC-C-cccChhhCC-------CCcCcEEEEecchhhc-cCcchheeeeE---eCHHHHHHHHHHHhhccCCC
Confidence 9999999883 3 233554431 1135899999999999 89999999999 69999999988775 56889
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..+|++. ..+.++.++.|+++++.+.+.|++. |+.+..|+|+||+|+++. +.+
T Consensus 293 s~~~Q~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~~f~~~~~~-~~~------- 353 (413)
T PLN00175 293 ATPMQWAAVAALRAP----------ESYYEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDHT-PFG------- 353 (413)
T ss_pred CHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecc-ccC-------
Confidence 999999999998632 1235568889999999999999998 888889999999997653 111
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCC--CCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQK--EGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~--~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
..++.+++..+++++||.+.||+.|+.. .+.+++||+++.+++++++++++|+++++
T Consensus 354 --~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 354 --FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCKDEETLRAAVERMKTKLK 412 (413)
T ss_pred --CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 1235678888888899999999999642 34569999999888999999999998875
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=406.05 Aligned_cols=359 Identities=19% Similarity=0.279 Sum_probs=298.5
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++....++.+..+...+.+.+..++++++|+.|.|+. +. ++.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~------------------------~~-----~~~~~~~~~ 55 (399)
T PRK07681 5 LATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDM------------------------PP-----ADFVREEMV 55 (399)
T ss_pred HhHHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 5788888889999998888887777788899999999985 33 677777777
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+... ...+|+ ..|.++||++||+|+++++|+++++ ++|++|+|+++++..++.+++ ++||.|+++
T Consensus 56 ~~~~~~--~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~-~~Gd~Vlv~~P~y~~~~ 131 (399)
T PRK07681 56 HTANQK--ESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYA-NPGDIILVPDPGYTAYE 131 (399)
T ss_pred HHHhcc--ccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhC-CCCCEEEECCCCccchH
Confidence 766542 334565 4799999999999999999999998 799999999999999999998 999999997
Q ss_pred -----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ .+.+|.+|+ +.+++.+.+ ++++|++||||||||.++|.+++++|+++|++++++||+
T Consensus 132 ~~~~~~G~~~~~v~~~~~~~~~~d~-~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~ 204 (399)
T PRK07681 132 TGIQMAGATSYYMPLKKENDFLPDL-ELIPEEIAD------KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVH 204 (399)
T ss_pred HHHHhcCCEEEEEecCCCCCCcCCH-HHHHHhccc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 66666 234578899 999998876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.| ++.+..++..+. ...+++|+++||||+| |+||+|+||++ +++++++.+.+... ..+++
T Consensus 205 De~y~~~~~-~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-~~~GlRiG~~i---~~~~l~~~~~~~~~~~~~~~ 272 (399)
T PRK07681 205 DFAYAEFYF-DGNKPISFLSVP-------GAKEVGVEINSLSKSY-SLAGSRIGYMI---GNEEIVRALTQFKSNTDYGV 272 (399)
T ss_pred eccchhhee-CCCCCCChhhCC-------CCcccEEEEeeccccc-CCccceeEEEe---cCHHHHHHHHHHHhhcccCC
Confidence 999999988 344444554431 1234789999999999 89999999999 69999999988775 56789
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..++.+.. .+.++.++.|+++++.+.+.|++. |+.+..|++++|+|++++ ..
T Consensus 273 s~~~q~~~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~--~~------- 332 (399)
T PRK07681 273 FLPIQKAACAALRNGA----------AFCEKNRGIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIP--KG------- 332 (399)
T ss_pred CHHHHHHHHHHHhCcH----------HHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeeEEEEECC--CC-------
Confidence 9999999999986421 234456778999999999999998 888888999999997654 22
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.++.+++..+++++||.+.||..|+. .+.+++||+++.+.+++++++++|++
T Consensus 333 ---~~~~~~~~~l~~~~gv~v~pg~~f~~-~~~~~iRis~~~~~~~~~~~l~~l~~ 384 (399)
T PRK07681 333 ---WTSLSFAYALMDRANVVVTPGHAFGP-HGEGFVRIALVQDEEVLQQAVENIRN 384 (399)
T ss_pred ---CCHHHHHHHHHHhCCEEEeCChhhCc-CCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 13566777877779999999999975 34569999999777999999999987
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=405.17 Aligned_cols=363 Identities=19% Similarity=0.289 Sum_probs=294.5
Q ss_pred hhhhhhccchhhhhHHHHHHHH-HHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASEL-QKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+.++.+++++++..+...+++. +..|+++|+|+.|+|+. +. |+.+.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~------------------------~~-----~~~~~~~~~ 52 (396)
T PRK09147 2 NPRLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKH------------------------PT-----PAFIKDALA 52 (396)
T ss_pred cchhhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 4567788899999888888877 44588999999999985 33 677788877
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCC-cEEEcCCcHHHHHHHHHHHhcCC---CCEEEEc----
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPE-LIFLTDGASKGVMQTLNCVIRGE---GDGVVLL---- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~~~~---gd~Vlvp---- 161 (463)
+.+. ....|++..|.++||++||+|+++++|++ ++++ +|++|+|+++++..++.+++ +| ||.|++|
T Consensus 53 ~~~~----~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~-~~~~~gd~vlv~~P~y 127 (396)
T PRK09147 53 ANLD----GLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVI-DRDGPGPLVVCPNPFY 127 (396)
T ss_pred HHhh----hhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHc-CCCCCCCEEEEcCCCc
Confidence 6654 34789999999999999999999889998 8986 99999999999999999998 89 8999997
Q ss_pred ---------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCe
Q 041151 162 ---------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENL 226 (463)
Q Consensus 162 ---------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~ 226 (463)
.|+++ .+++|++|+ +.+++.+.+ ++|+|++||||||||.++|.+++++|+++|++|++
T Consensus 128 ~~~~~~~~~~g~~~~~vp~~~~~~~~~d~-~~l~~~~~~------~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~ 200 (396)
T PRK09147 128 QIYEGAALLAGAEPYFLNCDPANNFAPDF-DAVPAEVWA------RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGF 200 (396)
T ss_pred cchHHHHHhcCCEEEEeccCccccCccCH-HHHHHHHhh------ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCe
Confidence 56665 244688999 999988876 79999999999999999999999999999999999
Q ss_pred EEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h
Q 041151 227 VLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I 305 (463)
Q Consensus 227 ~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~ 305 (463)
+||+||+|.++.|++..+..+.......++. +..+++|+++||||.| ++||+|+||++ +++++++.+.+... .
T Consensus 201 ~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~~~S~SK~~-~~~GlRiG~~~---~~~~l~~~~~~~~~~~ 274 (396)
T PRK09147 201 VIASDECYSEIYFDEAAPPLGLLEAAAELGR--DDFKRLVVFHSLSKRS-NVPGLRSGFVA---GDAALLKKFLLYRTYH 274 (396)
T ss_pred EEEeeccccccccCCCCCCchhhhhccccCc--cccccEEEEecccccc-CCccceeeeec---CCHHHHHHHHHHhhhc
Confidence 9999999999988432122222221111100 2235899999999998 89999999999 68999999987775 4
Q ss_pred cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHH
Q 041151 306 ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIE 385 (463)
Q Consensus 306 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~ 385 (463)
.++++.+.|.++...+.. ..+.++.++.|+++++.+.+.|++. +.+..|+|++|+|++++ .
T Consensus 275 ~~~~~~~~q~a~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~g~f~~~~~~--~---- 335 (396)
T PRK09147 275 GCAMPPAVQAASIAAWND-----------EAHVRENRALYREKFDAVTPILAPV--LDVQLPDAGFYLWAKVP--G---- 335 (396)
T ss_pred ccCCCHHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeEEEEEECC--C----
Confidence 577889999987777641 1234567888999999999999874 56678999999997664 1
Q ss_pred HHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC-----CCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 386 AAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ-----KEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 386 ~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~-----~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
++.+++..+++++||.+.||..|+. ..+.+++||+++.+++++++++++|++++.
T Consensus 336 --------~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 336 --------DDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVAPLAECVEAAERIVDFCR 395 (396)
T ss_pred --------CHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhc
Confidence 2566777778889999999999864 234579999999778999999999998763
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=404.60 Aligned_cols=373 Identities=20% Similarity=0.294 Sum_probs=301.9
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH 91 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~ 91 (463)
+.++.+++.+++..+...+.+.+..+.++++|+.|+|+. +. |+.+++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~------------------------~~-----~~~~~~~~~~ 57 (403)
T PRK08636 7 FNKIKRLPKYVFAEVNELKMAARRAGEDIIDFSMGNPDG------------------------PT-----PQHIIDKLCE 57 (403)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCCCEEEcCCcCCCC------------------------CC-----CHHHHHHHHH
Confidence 456778888888888888888888888899999999995 32 6778888876
Q ss_pred HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 92 YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 92 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
.+.. .....|+++.|.++||+++|+|+++++|+.++++ +|++|+|+++++..++.+++ +|||.|+++
T Consensus 58 ~~~~--~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~ 134 (403)
T PRK08636 58 SAQK--PKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAIT-NPGDVAIVPDPAYPIHSQ 134 (403)
T ss_pred HhcC--CccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHH
Confidence 6543 2467899999999999999999998899999998 79999999999999999998 999999996
Q ss_pred ----cCcee---c---CCCcccChHHHHHHHHHHHHhc-CCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 ----FHTTW---K---RQQIGVLIINDLQQSVAQARSK-GITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 ----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~-~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ + ++++++|+ +.+.+.+.+..+. .+++++|++|+||||||.++|.+++++|+++|++|+++||+
T Consensus 135 ~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~ 213 (403)
T PRK08636 135 AFILAGGNVHKMPLEYNEDFELDE-DQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIIS 213 (403)
T ss_pred HHHhcCCEEEEEeccccccCccCh-hhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEE
Confidence 56666 2 34589998 8665444332211 23789999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|+++.| ++.+..++..+. ...+++|+++||||+| |+||+|+||++ +++++++.+.+... ..+++
T Consensus 214 De~Y~~l~~-~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-~~~GlRiG~iv---~~~~li~~~~~~~~~~~~~~ 281 (403)
T PRK08636 214 DIAYADITF-DGYKTPSILEVE-------GAKDVAVESYTLSKSY-NMAGWRVGFVV---GNKKLVGALKKIKSWLDYGM 281 (403)
T ss_pred eccchhhcc-CCCCCCChhcCC-------CccccEEEEEeccccc-CCccceeeeee---CCHHHHHHHHHHHHHhcccC
Confidence 999999988 344444554431 1124688899999999 89999999998 69999999988775 45777
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..++.. ...+.+++++.|+++++.+.+.|++. |+.+..|+||+|+|++++ ..+
T Consensus 282 ~~~~q~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~g~~~~~~l~--~~~------ 342 (403)
T PRK08636 282 FTPIQVAATIALDG----------DQSCVEEIRETYRKRRDVLIESFANA-GWELQKPRASMFVWAKIP--EPA------ 342 (403)
T ss_pred ChHHHHHHHHHHhC----------cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCcceEEEEECC--Ccc------
Confidence 88899888877631 12345568889999999999999987 788888999999997654 210
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
...++.+++..+++++||.+.||..|+.. +.+++||+++.+++++++++++|+++++++
T Consensus 343 -~~~~~~~l~~~ll~~~gV~v~pg~~f~~~-~~~~iRi~~~~~~~~l~~~~~rl~~~l~~~ 401 (403)
T PRK08636 343 -RHLGSLEFSKQLLTEAKVAVSPGIGFGEY-GDEYVRIALIENENRIRQAARNIKKFLKEL 401 (403)
T ss_pred -CCCCHHHHHHHHHHhCCEEEecchhhCcC-CCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 00124667777788899999999999763 456999999988899999999999998764
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-50 Score=405.80 Aligned_cols=366 Identities=21% Similarity=0.317 Sum_probs=292.1
Q ss_pred hhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCC
Q 041151 23 RGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGL 100 (463)
Q Consensus 23 ~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~ 100 (463)
++.+...++++... ++++|+|++|+|+.+.. .+. |+.+.+++.+++.. ...
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~i~l~~G~P~~~~~--------------------~~~-----~~~~~~a~~~al~~--~~~ 87 (430)
T PLN00145 35 RAVLNRVKACVDAGGGPRPVLPLGHGDPSAFPC--------------------FRT-----APEAEDAVAAALRS--GKY 87 (430)
T ss_pred hhHHHHHHHhhhcccCCCCeeeCCCCCCCCCCC--------------------CCC-----CHHHHHHHHHHHHc--CcC
Confidence 33344555555433 77899999999984221 133 78888988888775 234
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee-
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW- 166 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~- 166 (463)
..|++..|.+++|+++++++.+++|.++++++|++|+|++++|.+++.++. +|||+|++| .|..+
T Consensus 88 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~-~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~ 166 (430)
T PLN00145 88 NSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLA-QPGANILLPRPGYPLYEARAVFSGLEVR 166 (430)
T ss_pred CCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHcCCEEE
Confidence 689999999999999999999889999999999999999999999999998 899999997 45544
Q ss_pred -----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 167 -----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 167 -----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
+..+|.+|+ +.+++.+++ ++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.| +
T Consensus 167 ~~~~~~~~~~~~d~-~~l~~~~~~------~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~-~ 238 (430)
T PLN00145 167 HFDLLPERGWEVDL-EGVEALADE------NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTF-G 238 (430)
T ss_pred EeeCCcccCCcCCH-HHHHHHhCc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhcc-C
Confidence 345789999 999998877 899999999999999999999999999999999999999999999988 3
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH------HHHhhhhhcccCChHHHH
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD------EIYKIASIALSPNVPAQI 315 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~q~ 315 (463)
+.++.++..+ +...++|+++||||.| ++||||+||++..+ ++.+++ .+........+++.+.|.
T Consensus 239 ~~~~~~~~~~--------~~~~~vi~~~S~SK~~-~~pG~RlG~iv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ 308 (430)
T PLN00145 239 SKPFVPMGVF--------GEVAPVLTLGSISKRW-VVPGWRLGWIATCD-PNGILKETKVVDSIRNYLNISTDPATFVQG 308 (430)
T ss_pred CCCccchhhh--------cccCcEEEEecccccc-CCCCeeEEEEEEec-chhhhhhhHHHHHHHHHhcccCCCCHHHHH
Confidence 4444555443 4445899999999999 89999999998521 333333 333443334467889999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHHHHhhcCCCC
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAKRAGKVP 394 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (463)
++..+|... ...+.++.++.++++++.+.+.|++++|+.+ ..|+|++|+|++++... ..+..+
T Consensus 309 a~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~-------~~~~~~ 372 (430)
T PLN00145 309 AIPQIIANT---------KEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSC-------LSGIKD 372 (430)
T ss_pred HHHHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhh-------cCCCCC
Confidence 999998631 1234556788899999999999999888876 47999999997654210 001224
Q ss_pred hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 041151 395 DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 395 ~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+.+++..+++++||.+.||..|+.+ +|+||+++.+.+++++++++|++++.+++++
T Consensus 373 ~~~~~~~ll~~~gV~v~pG~~fg~~---~~lRis~~~~~~~l~~al~rl~~~~~~~~~~ 428 (430)
T PLN00145 373 DMDFCCKLAKEESVVVLPGSALGMK---NWLRITFAIDPPSLEDGLERLKSFCLRHAKL 428 (430)
T ss_pred HHHHHHHHHHhCCEEEeCccccCCC---CeEEEEeCCCHHHHHHHHHHHHHHHHHhccc
Confidence 6778889999999999999999852 5999999988899999999999999888764
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-50 Score=408.28 Aligned_cols=368 Identities=20% Similarity=0.306 Sum_probs=290.3
Q ss_pred hhhhhHHHHH-HHHH-HhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCC
Q 041151 21 AVRGELYLRA-SELQ-KEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG 98 (463)
Q Consensus 21 ~~~~~~~~~~-~~~~-~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~ 98 (463)
-+++.+...+ .... +.++++|+|+.|+|+.+.. .+. |+.+.+++.+++.. +
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp~~~p~--------------------~~~-----~~~~~~~~~~~~~~--~ 99 (462)
T PLN02187 47 VTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPC--------------------FRT-----CIEAEDAVVDVLRS--G 99 (462)
T ss_pred chHhhHHHHHHhhcccCCCCCeEECCCCCCCCCCC--------------------CCC-----CHHHHHHHHHHHhC--C
Confidence 3555554333 2222 3467899999999985110 022 67888888887775 2
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCce
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTT 165 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~ 165 (463)
....|++..|.++||+++|+|+++++++.+++++|++|+|++++|..++.+++ +|||.|+++ .|++
T Consensus 100 ~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~y~~~~~~~g~~ 178 (462)
T PLN02187 100 KGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLA-RPNANILLPRPGFPHYDARAAYSGLE 178 (462)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCCccHHHHHHHcCCE
Confidence 45689999999999999999999888999999999999999999999999998 999999997 5655
Q ss_pred e------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccccc
Q 041151 166 W------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239 (463)
Q Consensus 166 ~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~ 239 (463)
+ +.++|++|+ +.|++++++ ++++|+++|||||||.+++.+++++|+++|++++++||+||+|.++.|
T Consensus 179 ~~~~~l~~~~~~~~d~-~~l~~~~~~------~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f 251 (462)
T PLN02187 179 VRKFDLLPEKEWEIDL-EGIEAIADE------NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIF 251 (462)
T ss_pred EEEEeCccccCCccCH-HHHHHhcCC------CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEecccccccc
Confidence 5 246799999 999998876 789999999999999999999999999999999999999999999988
Q ss_pred CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh----HHHHHHhhhh-hcc--cCChH
Q 041151 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK----TVDEIYKIAS-IAL--SPNVP 312 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~l~~~~~-~~~--~~~~~ 312 (463)
+ +.++.++..+ ....++|+++||||+| ++||||+||+++ .+++ +++.+..... ..+ +++.+
T Consensus 252 ~-~~~~~s~~~~--------~~~~~vi~l~SfSK~f-~~pGlRiG~~v~--~~p~~~~~~~~~~~~~~~~~~~~~~~s~~ 319 (462)
T PLN02187 252 G-DNPFVSMGKF--------ASIVPVLTLAGISKGW-VVPGWKIGWIAL--NDPEGVFETTKVLQSIKQNLDVTPDPATI 319 (462)
T ss_pred C-CCCceeHHHh--------ccCCcEEEEecchhhc-CCccceeEEEEe--cCchhHHHHHHHHHHHHHhccccCCCCHH
Confidence 3 4444455544 3334799999999999 999999999995 2332 3345555554 223 45899
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCceeEEeeeccCChhhHHHHhhcC
Q 041151 313 AQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFTEGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 313 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
.|.++..+|++. ...+.++.++.|+++++.+.+.|++++++. +..|+|++|+|+++..+.. .+
T Consensus 320 ~Q~a~~~~L~~~---------~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~-------~~ 383 (462)
T PLN02187 320 IQAALPAILEKA---------DKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLM-------DN 383 (462)
T ss_pred HHHHHHHHHhcC---------cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhC-------CC
Confidence 999999998531 123455678899999999999999986554 3478999999976642110 01
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
+.++.+++..+++++||.+.||+.|+. .+|+||+++.+++++++++++|++++++++++.
T Consensus 384 ~~~~~~~~~~ll~~~gV~v~pG~~fg~---~~~iRis~~~~~e~l~~al~rL~~~l~~~~~~~ 443 (462)
T PLN02187 384 IKDDIDFCVKLAREENLVFLPGDALGL---KNWMRITIGVEAHMLEDALERLKGFCTRHAKKT 443 (462)
T ss_pred CCCHHHHHHHHHhhCCEEEECccccCC---CCeEEEEeCCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 123567778888999999999999974 359999999888999999999999999888764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=401.34 Aligned_cols=371 Identities=22% Similarity=0.309 Sum_probs=308.9
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
..+++|+...+++.+..+...+++....+.++++|+.|.|+. +. |+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~------------------------~~-----~~~~~~~ 54 (402)
T PRK06107 4 FVPAARVSRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDF------------------------DT-----PDHIKQA 54 (402)
T ss_pred hhhhHHhhhcCccHHHHHHHHHHHHHhccCCEEEcCCCCCCC------------------------CC-----CHHHHHH
Confidence 357888888888887777777887877788899999999985 33 6778888
Q ss_pred HHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 89 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
+.+.+.. ...+|+++.|.++||+++++++.+.+|+.+++++|++|+|+++++..++.+++ ++||.|++|
T Consensus 55 ~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~vl~~~p~y~~y 130 (402)
T PRK06107 55 AVAAIER---GETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATL-EAGDEVIIPAPYWVSY 130 (402)
T ss_pred HHHHHHc---CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCCCcCH
Confidence 8887764 34689999999999999999998888999999999999999999999999987 899999997
Q ss_pred ------cCcee-----c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC-CeEE
Q 041151 162 ------FHTTW-----K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE-NLVL 228 (463)
Q Consensus 162 ------~g~~~-----~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~-~~~v 228 (463)
.++.+ . ++++.+|+ +.+++.+.+ ++++|++++||||||.++|.+++++|+++|+++ +++|
T Consensus 131 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~i 203 (402)
T PRK06107 131 PDMVLANDGTPVIVACPEEQGFKLTP-EALEAAITP------RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLV 203 (402)
T ss_pred HHHHHHcCCEEEEecCCcccCCCCCH-HHHHhhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEE
Confidence 23333 1 34577999 999998876 799999999999999999999999999999998 9999
Q ss_pred EecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc
Q 041151 229 LGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL 307 (463)
Q Consensus 229 i~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~ 307 (463)
|+||+|.++.| .+.+..++..+.++. .+++|+++||||.| ++||+|+||++ +++++++.+..... ..+
T Consensus 204 I~De~y~~l~~-~~~~~~~~~~~~~~~------~~~vi~~~S~SK~~-~~pGlRiG~~~---~~~~~~~~~~~~~~~~~~ 272 (402)
T PRK06107 204 LTDDIYDHIRF-DDEPTPHLLAAAPEL------RDRVLVTNGVSKTY-AMTGWRIGYAA---GPADLIAAINKLQSQSSS 272 (402)
T ss_pred EEehhcccccc-CCCCCCCHHHhCcCc------cCCEEEEeccchhh-cCcccceeeee---cCHHHHHHHHHHHHhccc
Confidence 99999999888 344455665543322 24799999999999 89999999999 69999999998876 578
Q ss_pred cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC------Ch
Q 041151 308 SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL------PP 381 (463)
Q Consensus 308 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~------~~ 381 (463)
+++.+.|.++..+|.+. .++.++.++.|+++++.+.+.|++++|+.+..|+||||+|+++.. |.
T Consensus 273 ~~s~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~~~~~~~~~~~~~~~~ 342 (402)
T PRK06107 273 CPSSISQAAAAAALNGD----------QSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPE 342 (402)
T ss_pred CCChHHHHHHHHHhcCC----------hHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEeeeccccccccccc
Confidence 89999999999998631 133456788899999999999998878898899999999977631 11
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+. ...++.+++..+++++||.++||+.|+.. +++||+++.+.+++++++++|+++++++
T Consensus 343 ~~-------~~~~~~~~~~~l~~~~gv~v~pg~~Fg~~---~~iRis~~~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 343 GK-------VLETDQDVVLYLLDSAGVAVVQGTAYGLS---PYFRLSIATSLETLEEACARIERAVAAL 401 (402)
T ss_pred cc-------CCCCHHHHHHHHHHhCCEEEeCccccCCC---CeEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 10 01245677888889999999999999852 4899999988899999999999988764
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=397.35 Aligned_cols=362 Identities=22% Similarity=0.319 Sum_probs=301.6
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.++++++++.++++.++...+++.+..+.++++|+.|.|+. |. |+.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~------------------------~~-----~~~v~~a~ 54 (387)
T PRK08960 4 GYSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDF------------------------TT-----AEPIVAAG 54 (387)
T ss_pred chhhHHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCC------------------------CC-----CHHHHHHH
Confidence 45788889999999999998888888888999999999985 43 88899998
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.. ....|++..|.+++|+++|+++++++|+.+++++|++|+|+++++..++.+++ +|||+|+++
T Consensus 55 ~~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~ 130 (387)
T PRK08960 55 QAALAA---GHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLV-DPGKHWLLADPGYPCNR 130 (387)
T ss_pred HHHHhc---CCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhc-CCCCEEEEcCCCCcchH
Confidence 888764 33579989999999999999999999999999999999999999999999998 999999997
Q ss_pred -----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ .+.++.+|+ +.+++.+++ +++++++++||||||.+++.+++++|+++|++++++||+
T Consensus 131 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~ 203 (387)
T PRK08960 131 HFLRLVEGAAQLVPVGPDSRYQLTP-ALVERHWNA------DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVV 203 (387)
T ss_pred HHHHhcCCeEEEEecCcccCCCCCH-HHHHHHhCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEE
Confidence 45544 233578999 999998877 789999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.|+ + ...++... + .++|+++||||.| |++|+|+||++ +++++++.+.++.. ...++
T Consensus 204 De~Y~~~~~~-~-~~~~~~~~--------~--~~vi~~~S~SK~~-g~~GlRiG~~~---~~~~~~~~~~~~~~~~~~~~ 267 (387)
T PRK08960 204 DEIYHGLTYG-V-DAASVLEV--------D--DDAFVLNSFSKYF-GMTGWRLGWLV---APPAAVPELEKLAQNLYISA 267 (387)
T ss_pred EccccccccC-C-CCCChhhc--------c--CCEEEEeeccccc-CCcccEEEEEE---cCHHHHHHHHHHHhhhccCC
Confidence 9999998773 2 22344322 2 3789999999999 89999999999 68999999988775 56788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHHHHh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
+.+.|.++..++.+. ...+.++.++.|+++++.+.+.|+++ |+.+ ..|+|++|+|++++ ..
T Consensus 268 s~~~q~a~~~~l~~~---------~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~--~~------ 329 (387)
T PRK08960 268 STPAQHAALACFEPE---------TLAILEARRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADIS--AF------ 329 (387)
T ss_pred CHHHHHHHHHHhhcC---------cHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEecc--cc------
Confidence 999999998887521 12445567889999999999999987 7664 46899999996654 10
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
..++.+++..+++++||.+.||+.|+.....+++||+++.+.+++.+++++|++++.
T Consensus 330 ---~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~~~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 330 ---GGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYTQSLPRLQEAVERIARGLR 386 (387)
T ss_pred ---CCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 013566777778889999999999976434569999999777889999999887764
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=398.19 Aligned_cols=361 Identities=19% Similarity=0.270 Sum_probs=294.5
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++.+..++.+..+...+.+....+.++|+|+.|+|+. +. ++.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~------------------------~~-----~~~~~~~~~ 55 (389)
T PRK08068 5 PSELLKQLPKQFFASLVAKVNKKVAEGHDVINLGQGNPDQ------------------------PT-----PEHIVEALQ 55 (389)
T ss_pred hhhHhhhcCccHHHHHHHHHHHHHhcCCCeEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 5677888888888888888877777778899999999985 33 667788777
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+++.. .....|++..|.++||+++|+|+.+++|.+++++ +|++|+|+++++..++.+++ ++||.|++|
T Consensus 56 ~~~~~--~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~-~~gd~vlv~~P~y~~~~ 132 (389)
T PRK08068 56 EAAEN--PANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLM-NPGDTILVPDPGYPDYL 132 (389)
T ss_pred HHHhC--CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchH
Confidence 77664 2456899999999999999999998889999998 89999999999999999998 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ + +.++.+|+ +++++.+.+ ++++|++||||||||.++|.+++++|+++|++++++||+
T Consensus 133 ~~~~~~g~~~~~i~~~~~~~~~~d~-~~l~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~ 205 (389)
T PRK08068 133 SGVALARAQFETMPLIAENNFLPDY-TKIPEEVAE------KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVH 205 (389)
T ss_pred HHHHhcCCEEEEeecccccCCCCCH-HHHHHhccc------cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEE
Confidence 56655 2 23678899 999998876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.|+ +....++... . +...++|+++||||+| |+||+|+||++ +++++++.+.+... ...++
T Consensus 206 Deay~~~~~~-~~~~~s~~~~---~----~~~~~~i~~~S~SK~~-g~~GlRiG~~~---~~~~l~~~l~~~~~~~~~~~ 273 (389)
T PRK08068 206 DFAYGAIGFD-GQKPVSFLQT---P----GAKDVGIELYTLSKTF-NMAGWRVAFAV---GNESVIEAINLLQDHLFVSL 273 (389)
T ss_pred ehhhhhhccC-CCCCcChhhC---C----CccCCEEEEecchhcc-CCccceeEeEe---cCHHHHHHHHHHHhhccCCC
Confidence 9999998773 3233343332 1 2234789999999999 99999999999 69999999988875 34555
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..++.+. .++.+++++.|+++++.+.+.|+++ |+.+.+|+|++|+|++++ ..
T Consensus 274 ~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~~~~g~~~~~v~~~--~~------- 333 (389)
T PRK08068 274 FGAIQDAAIEALLSD----------QSCVAELVARYESRRNAFISACREI-GWEVDAPKGSFFAWMPVP--KG------- 333 (389)
T ss_pred ChHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECC--CC-------
Confidence 666788887776421 1445568889999999999999998 888889999999996553 21
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
.++.++...+++++||.+.||..|+. .+.+++||+++.+++++.+++++|+++
T Consensus 334 ---~~~~~~~~~l~~~~gi~v~pg~~f~~-~~~~~iRi~~~~~~~~l~~al~~l~~~ 386 (389)
T PRK08068 334 ---YTSEQFADLLLEKAHVAVAPGNGFGE-HGEGYVRVGLLTDEERLREAVERIGKL 386 (389)
T ss_pred ---CCHHHHHHHHHHhCCEEEecchHhCc-cCCCeEEEEEcCCHHHHHHHHHHHHHh
Confidence 13566667766678999999999985 345699999997778888888887653
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=398.05 Aligned_cols=374 Identities=19% Similarity=0.301 Sum_probs=299.9
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH 91 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~ 91 (463)
++++.+++++.+.++...+++.+..|+++|+|+.|+|+. +. |+.+++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~------------------------~~-----~~~~~~~~~~ 54 (405)
T PRK09148 4 FHRIRRLPPYVFEQVNRLKAAARAAGADIIDLGMGNPDL------------------------PT-----PQHIVDKLCE 54 (405)
T ss_pred hhhhhcCCccHHHHHHHHHHHHHhcCCCeEEcCCCCCCC------------------------CC-----CHHHHHHHHH
Confidence 466777888888888888887888888999999999985 33 7788888777
Q ss_pred HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 92 YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 92 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
.+.. .....|+++.|.++||+++|+|+++++|+.++++ +|++|+|+++++..++.+++ ++||.|+++
T Consensus 55 ~~~~--~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~ 131 (405)
T PRK09148 55 TAQD--PRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAIT-APGDVILCPNPSYPIHAF 131 (405)
T ss_pred HHcC--cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhc-CCCCEEEEcCCCCcccHH
Confidence 6643 2457899999999999999999998889989998 89999999999999999998 999999997
Q ss_pred ----cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccc
Q 041151 162 ----FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234 (463)
Q Consensus 162 ----~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay 234 (463)
.|+++ +.+..+.+. +.+++.++.. .+++++|++++||||||.++|.+++++|+++|++++++||+||+|
T Consensus 132 ~~~~~g~~v~~v~~~~~~~~~-~~l~~~~~~~---~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y 207 (405)
T PRK09148 132 GFIMAGGVIRSVPAEPDEEFF-PALERAVRHS---IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAY 207 (405)
T ss_pred HHHhcCCEEEEEeCCCCCCCc-cCHHHHHhhc---cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccc
Confidence 56665 222222233 4555554421 117899999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHH
Q 041151 235 QQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPA 313 (463)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 313 (463)
.++.| ++.+..++..+ + ...+++|+++||||.| |+||+|+||++ +++++++.+.+.+. ..++++.+.
T Consensus 208 ~~~~~-~~~~~~s~~~~-~------~~~~~~i~~~SfSK~~-~~pGlR~G~~v---~~~~~i~~l~~~~~~~~~~~~~~~ 275 (405)
T PRK09148 208 SEIYF-DGNPPPSVLQV-P------GAKDVTVEFTSMSKTF-SMAGWRMGFAV---GNERLIAALTRVKSYLDYGAFTPI 275 (405)
T ss_pred hhhhc-CCCCCCChhhC-C------CccCcEEEEecccccc-CCcchheeeee---CCHHHHHHHHHHHHHhccCCChHH
Confidence 99888 34344455443 1 1124688999999999 99999999999 69999999988876 567888999
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCC
Q 041151 314 QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV 393 (463)
Q Consensus 314 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 393 (463)
|.++..+|.+. ..+.++.++.|+++++.+.+.|++. |+.+..|+|++|+|++++ ... ...
T Consensus 276 q~~~~~~L~~~----------~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~l~--~~~-------~~~ 335 (405)
T PRK09148 276 QVAATAALNGP----------QDCIAEMRELYKKRRDVLVESFGRA-GWDIPPPAASMFAWAPIP--EAF-------RHL 335 (405)
T ss_pred HHHHHHHHhCc----------HHHHHHHHHHHHHHHHHHHHHHHHc-CCccCCCCeeEEEEEECC--Ccc-------CCC
Confidence 99999998531 2334567888999999999999987 788778999999996654 210 001
Q ss_pred ChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 394 PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 394 ~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
++.+++..+++++||.+.||..|+. .+.+++||+++.+.+++.+++++|++++.++.+-.
T Consensus 336 ~~~~~~~~ll~~~gV~v~pg~~f~~-~~~~~~Ri~~~~~~~~l~~al~~l~~~l~~~~~~~ 395 (405)
T PRK09148 336 GSLEFSKLLVEKADVAVAPGVGFGE-HGDGYVRIALVENEQRIRQAARNIKRFLSSADETL 395 (405)
T ss_pred CHHHHHHHHHHhCCEEEeCchhhCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456777778889999999999975 34569999999888999999999999998876543
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=398.47 Aligned_cols=360 Identities=20% Similarity=0.294 Sum_probs=297.1
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
|+.++.+..++.+..+...+++.++.|+++++|+.|+|+. +. |+.+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------~~-----~~~~~~~~~ 52 (383)
T TIGR03540 2 LADRIENLPPYLFAEIDKKKAEKKAEGVDVISLGIGDPDL------------------------PT-----PKHIVEALC 52 (383)
T ss_pred cchhhccCChhHHHHHHHHHHHHHhcCCCeEEeCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 3566777777777778888888888888999999999985 33 778888888
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+++.. .....|+++.|.++||+++++|+.+++|++++++ +|++|+|+++++..++.+++ ++||.|+++
T Consensus 53 ~~~~~--~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~-~~gd~vlv~~P~y~~~~ 129 (383)
T TIGR03540 53 KAAEN--PENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFV-NPGDIVLVPDPGYPVYR 129 (383)
T ss_pred HHHhC--CCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHhC-CCCCEEEEeCCCCcchH
Confidence 77654 2457899999999999999999998889988887 69999999999999999998 899999997
Q ss_pred -----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ .++++.+|+ +++++.+.+ ++++|++++||||||.+++.+++++|+++|++|+++||+
T Consensus 130 ~~~~~~G~~v~~v~~~~~~g~~~d~-~~l~~~~~~------~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 202 (383)
T TIGR03540 130 IGTLFAGGEPYEMPLKEENGFLPDF-DAIPEDIAK------KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCH 202 (383)
T ss_pred HHHHhcCCEEEEEecCcccCCccCH-HHHHhhccc------cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEE
Confidence 56655 234577899 999998876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.| ++....++..+. ....++|+++||||.| |+||+|+||++ +++++++.+.+... ...++
T Consensus 203 De~y~~l~~-~~~~~~~~~~~~-------~~~~~~i~~~SfSK~~-g~~GlRiG~~i---~~~~l~~~~~~~~~~~~~~~ 270 (383)
T TIGR03540 203 DNAYSEITF-DGYKAPSFLEVD-------GAKDVGIEFHSLSKTY-NMTGWRIGMAV---GNADLIAGLGKVKTNVDSGV 270 (383)
T ss_pred ecchhhhcc-CCCCCcCcccCC-------CcccCEEEEEeccccc-CCccceeeEEe---CCHHHHHHHHHHHHhcccCC
Confidence 999999888 344444544331 1124789999999999 89999999998 69999999988775 45677
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..++.+. .++.+++++.++++++.+.+.|++. |+.+..|++++|+|++++ .+.
T Consensus 271 ~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~l~--~~~------ 331 (383)
T TIGR03540 271 FQAIQYAAIAALNGP----------QDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKPKATFYVWVPVP--EGY------ 331 (383)
T ss_pred ChHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCEecCCCcceEEEEECC--CCC------
Confidence 889999999888631 2344567888999999999999998 888889999999996653 221
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
++.+++..+++++||.+.||+.|+. .+.+++||+++.+++++.+++++|++
T Consensus 332 ----~~~~~~~~ll~~~gi~v~~g~~f~~-~~~~~~Ris~~~~~~~l~~~l~~l~~ 382 (383)
T TIGR03540 332 ----TSAEFAARLLEETGVVVTPGVGFGE-YGEGYIRISLTVPDERLEEAVARIKK 382 (383)
T ss_pred ----CHHHHHHHHHHHCCEEEecchhhCc-cCCCeEEEEecCCHHHHHHHHHHHhh
Confidence 3567777778889999999999975 34569999999777888888888864
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=398.49 Aligned_cols=361 Identities=19% Similarity=0.264 Sum_probs=293.6
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++.++.++....+...+++.+..|+++++|+.|+|+. +. |..+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~p~~------------------------~~-----p~~~~~~~ 57 (394)
T PRK05942 7 TPADRLQALPPYVFARLDELKARAREQGLDLIDLGMGNPDG------------------------AA-----PQPVIEAA 57 (394)
T ss_pred chhhhhccCCCcHHHHHHHHHHHHHhcCCCeEEcCCCCCCC------------------------CC-----CHHHHHHH
Confidence 44677777777767667667777777788899999999984 32 67788887
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+.. .....|+++.|.++||+++|+|+++++|++++++ +|++|+|+++++..++.+++ +|||+|+++
T Consensus 58 ~~~~~~--~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~-~~gd~Vlv~~P~y~~~ 134 (394)
T PRK05942 58 IAALAD--PQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYV-NPGDVVLVPSPAYPAH 134 (394)
T ss_pred HHHHhC--CCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHhC-CCCCEEEEcCCCCcch
Confidence 776653 2457899999999999999999998889989998 59999999999999999998 999999997
Q ss_pred ------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|+++ .+.+|.+|+ +++++.+.+ ++|+|+++|||||||.++|.+++++|+++|++++++||
T Consensus 135 ~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~~~~------~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI 207 (394)
T PRK05942 135 FRGPLIAGAQIYPIILKPENDWLIDL-SSIPEEVAQ------QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLV 207 (394)
T ss_pred HHHHHHcCCEEEEeecCCccCCccCH-HHHHHhccc------cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEE
Confidence 56665 234578999 999998876 89999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
+||+|.++.+ ++....++..+. ...+++|+++||||.| |+||+|+||++ +++++++.+.+... ..++
T Consensus 208 ~De~y~~~~~-~~~~~~~~~~~~-------~~~~~~i~~~SfSK~~-~~~GlRiG~i~---~~~~l~~~l~~~~~~~~~~ 275 (394)
T PRK05942 208 HDLCYAELAF-DGYQPTSLLEIP-------GAKDIGVEFHTLSKTY-NMAGWRVGFVV---GNRHIIQGLRTLKTNLDYG 275 (394)
T ss_pred Eeccchhhcc-CCCCCCChhhCC-------CccccEEEEecchhcc-CChhhheeeee---cCHHHHHHHHHHHhhcccC
Confidence 9999999887 343344544431 1123679999999999 89999999999 68999999988775 4677
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
++.+.|.++..+++. ..++.++.++.|+++++.+.+.|++. |+.+..|+|++|+|++++ ..
T Consensus 276 ~~~~~q~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~~~~~--~~------ 336 (394)
T PRK05942 276 IFSALQKAAETALQL----------PDSYLQQVQERYRTRRDFLIQGLGEL-GWNIPPTKATMYLWVPCP--VG------ 336 (394)
T ss_pred CCHHHHHHHHHHHhC----------cHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeeEEEEECC--CC------
Confidence 888999999988852 12334567888999999999999887 888888999999996654 21
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.++.+++..+++++||.+.||+.|+. .+.+++||+++.+.+.+.+++++|++
T Consensus 337 ----~~~~~~~~~~l~~~gV~v~~g~~f~~-~~~~~iRis~~~~~~~l~~~l~~l~~ 388 (394)
T PRK05942 337 ----MGSTDFALNVLQKTGVVVTPGNAFGE-GGEGYVRISLIADCDRLGEALDRLKQ 388 (394)
T ss_pred ----CCHHHHHHHHHHHCCEEEeCChhhCc-CCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 12456667788899999999999975 34569999999666777777777654
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=397.66 Aligned_cols=359 Identities=20% Similarity=0.290 Sum_probs=298.2
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++....++....+...+++.+..+.++++|+.|+|+. +. |+.+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~~ 54 (385)
T PRK09276 4 LADRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDL------------------------PT-----PDHIIEAMC 54 (385)
T ss_pred hhhHhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 5788888889988888888888888888999999999885 33 677888887
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+++.. .....|+++.|.++||+++++|+++++|.+++++ +|++|+|+++++..++.+++ +|||.|+++
T Consensus 55 ~~~~~--~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~-~~gd~Vl~~~P~y~~~~ 131 (385)
T PRK09276 55 KAVED--PENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFV-NPGDVVLVPDPGYPVYK 131 (385)
T ss_pred HHHhC--CCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC-CCCCEEEEcCCCCcChH
Confidence 77764 2457899999999999999999998889888887 59999999999999999998 999999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + +.++.+|+ +++++.+.+ ++++|+++|||||||.+++.+++++|+++|++++++||+
T Consensus 132 ~~~~~~g~~~~~v~~~~~~g~~~d~-~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (385)
T PRK09276 132 IGTIFAGGEPYFMPLKEENGFLPDL-DAIPEDVAK------KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCH 204 (385)
T ss_pred HHHHHcCCEEEEEecCCCCCCcCCH-HHHHHhccc------cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 56655 2 33577899 999888776 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
||+|.++.| ++....++..+ +. .+++|+++||||.| |+||+|+||++ +++++++.+.+... ...+
T Consensus 205 De~y~~~~~-~~~~~~~~~~~--------~~~~~~~i~~~S~SK~~-g~~GlRiG~~i---~~~~l~~~~~~~~~~~~~~ 271 (385)
T PRK09276 205 DAAYSEIAY-DGYKPPSFLEV--------PGAKDVGIEFHSLSKTY-NMTGWRIGFAV---GNADLIAGLGKVKSNVDSG 271 (385)
T ss_pred ecchhheec-CCCCCCChhcc--------CCCcCCEEEEecchhhc-CCcchhheeee---CCHHHHHHHHHHHhhccCC
Confidence 999999887 34444455443 22 34789999999999 99999999999 69999999988775 4556
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
++.+.|.++..++.+ ...+.+++++.++++++.+.+.|++. |+.+..|+|++|+|++++ ..
T Consensus 272 ~~~~~q~~~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~v~~~--~~------ 332 (385)
T PRK09276 272 VFQAIQEAGIAALNG----------PQEVVEELRKIYQERRDILVEGLRKL-GLEVEPPKATFYVWAPVP--KG------ 332 (385)
T ss_pred CCHHHHHHHHHHHcC----------cHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEEECC--CC------
Confidence 778899999888852 12345567888999999999999998 888888999999996653 22
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.++.+++..+++++||.+.||..|+. .+.+++||+++.+++++.+++++|++
T Consensus 333 ----~~~~~l~~~ll~~~gi~v~~g~~f~~-~~~~~~Ris~~~~~~~l~~~l~~l~~ 384 (385)
T PRK09276 333 ----YTSAEFATLLLDKAGVVVTPGNGFGE-YGEGYFRIALTVPDERIEEAVERIKK 384 (385)
T ss_pred ----CCHHHHHHHHHHhCCEEECCchhhCC-CCCCeEEEEeCCCHHHHHHHHHHHhh
Confidence 13566777777889999999999975 34569999999777888888888864
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=396.47 Aligned_cols=358 Identities=21% Similarity=0.322 Sum_probs=293.1
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++.......++.+..... ...+++||+.|+|+. +. ++.+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~p~~------------------------~~-----~~~~~~~~ 51 (384)
T PRK06348 5 FLAKKYQQMEVNIMAEIATLAK----KFPDIIDLSLGDPDL------------------------IT-----DESIINAA 51 (384)
T ss_pred HHHHHHhcCCccHHHHHHHHHH----hcCCcEEcCCCCCCC------------------------CC-----CHHHHHHH
Confidence 4677787777777777766543 234689999999985 33 66777776
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.... ....|+++.|.++||+++++|+.+++|+.+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 52 ~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~ 127 (384)
T PRK06348 52 FEDAKK---GHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYK 127 (384)
T ss_pred HHHHhc---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchH
Confidence 665543 45789999999999999999999889999999999999999999999999998 999999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + .+++.+|+ +.|++.+++ ++++|++++||||||.++|.+++++|+++|++++++||+
T Consensus 128 ~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 128 DQIEMVGGKPIILETYEEDGFQINV-KKLEALITS------KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred HHHHHcCCEEEEecCCcCcCCcCCH-HHHHHhhCc------CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEE
Confidence 45554 2 34677999 999998876 789999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.|+ + ...++..+. ...+++|+++||||++ |+||+|+||++ +++++++.+.++.. ..+++
T Consensus 201 De~y~~~~~~-~-~~~~~~~~~-------~~~~~vi~~~SfSK~~-~l~GlRiG~~v---~~~~~~~~~~~~~~~~~~~~ 267 (384)
T PRK06348 201 DEVYDGFSFY-E-DFVPMATLA-------GMPERTITFGSFSKDF-AMTGWRIGYVI---APDYIIETAKIINEGICFSA 267 (384)
T ss_pred ecccccceeC-C-CccchhhcC-------CCcCcEEEEecchhcc-CCccccceeee---cCHHHHHHHHHHHHhccCCC
Confidence 9999999883 3 233443331 1134899999999999 99999999999 58899999988775 46788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..++.. ..++.+++++.|+++++.+.+.|+.++++.+..|+|+||+|++++.+ +
T Consensus 268 ~~~~q~~~~~~l~~----------~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~~~~~~~~~-~------- 329 (384)
T PRK06348 268 PTISQRAAIYALKH----------RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIYAFINIKKT-G------- 329 (384)
T ss_pred CHHHHHHHHHHHhC----------cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEecccC-C-------
Confidence 99999999988852 12334567888999999999999988788888999999999665421 1
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
.++.+++..+++++||.+.||+.|+. .+.+++||+++.+.+++++++++|+++
T Consensus 330 ---~~~~~l~~~l~~~~gv~v~pg~~f~~-~~~~~iRi~~~~~~~~l~~al~~l~~~ 382 (384)
T PRK06348 330 ---LSSVEFCEKLLKEAHVLVIPGKAFGE-SGEGYIRLACTVGIEVLEEAFNRIEKM 382 (384)
T ss_pred ---CCHHHHHHHHHHhCCEEEcCchhhcc-CCCCeEEEEecCCHHHHHHHHHHHHhh
Confidence 13566777777889999999999975 356799999998889999999998754
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=395.43 Aligned_cols=343 Identities=17% Similarity=0.264 Sum_probs=280.9
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
++++++|+.|+|+. .+. |+.+.+++.+++.. ....+|++..|.++||++|
T Consensus 38 ~~~~i~l~~g~~~~-----------------------~~p-----~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~LR~ai 87 (405)
T PRK06207 38 PGRPVDFSHGDVDA-----------------------HEP-----TPGAFELFSAGVER--GGVQAYTEYRGDADIRELL 87 (405)
T ss_pred CCCceecCCcCCCC-----------------------CCC-----CHHHHHHHHHHHhc--CCCccCCCCCCCHHHHHHH
Confidence 35689999999983 122 67888888887765 2456899999999999999
Q ss_pred HHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c------CCCccc
Q 041151 117 AEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K------RQQIGV 173 (463)
Q Consensus 117 a~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~------~~~~~~ 173 (463)
++++.+.+|+++++ ++|++|+|+++++..++.+++ ++||.|+++ .|.++ + ..++++
T Consensus 88 a~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~ 166 (405)
T PRK06207 88 AARLAAFTGAPVDAADELIITPGTQGALFLAVAATV-ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGL 166 (405)
T ss_pred HHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCc
Confidence 99999988998898 899999999999999999998 999999996 56665 2 136889
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 253 (463)
|+ +.|++++++ ++++|++++||||||.+++.+++++|+++|++++++||+||+|.++.|+ +.++.++..+.
T Consensus 167 d~-~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~-~~~~~~~~~~~- 237 (405)
T PRK06207 167 DL-DQLEEAFKA------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYD-GTSYTHLRALP- 237 (405)
T ss_pred CH-HHHHHhhhh------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC-CCCCCchhcCC-
Confidence 99 999999887 7999999999999999999999999999999999999999999999883 33444443321
Q ss_pred hcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH
Q 041151 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE 332 (463)
Q Consensus 254 ~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 332 (463)
...+++|+++||||+| ++||+|+||++ +++++++++.+... ...+.+.+.|.++..++++..
T Consensus 238 ------~~~~~vi~i~SfSK~~-~lpGlRiG~ii---~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~------- 300 (405)
T PRK06207 238 ------IDPENVITIMGPSKTE-SLSGYRLGVAF---GSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD------- 300 (405)
T ss_pred ------CCcCcEEEEecchhhc-cCcccceEEEE---cCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcH-------
Confidence 1235899999999999 99999999998 68999999988876 566778899999999986311
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC
Q 041151 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p 412 (463)
.+.++..+.++++++.+.+.|++++|+.+..|+|++|+|++++ .. ..++.+++..+++++||.+.|
T Consensus 301 ---~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~--~~---------~~~~~~~~~~l~~~~gV~v~p 366 (405)
T PRK06207 301 ---GWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLP--RL---------AVSLHDFVKILRLQAGVIVTP 366 (405)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCc--cc---------CCCHHHHHHHHHHhcCEEEeC
Confidence 1223345567888999999998887888888999999997654 21 013456676766789999999
Q ss_pred CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|+.|+.. +.+++|||++.+.+++++++++|++++++++
T Consensus 367 G~~F~~~-~~~~~Ris~~~~~~~l~~al~rl~~~l~~~~ 404 (405)
T PRK06207 367 GTEFSPH-TADSIRLNFSQDHAAAVAAAERIAQLIERYR 404 (405)
T ss_pred chHhCCC-CCCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 9999753 4569999999878999999999999987654
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=393.51 Aligned_cols=360 Identities=20% Similarity=0.343 Sum_probs=289.9
Q ss_pred hhhhhccchhhhhHHHHHHHHH-HhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQ-KEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH 91 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~ 91 (463)
.++...+.+.++.+...+.+.. ..|+++++|+.|+|+. +. |+.+.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~------------------------~~-----~~~~~~a~~~ 52 (393)
T TIGR03538 2 PNLSRLQPYPFEKLAALLAGVTPPASKPPIALSIGEPKH------------------------PT-----PAFVLEALRE 52 (393)
T ss_pred chhhhCCccHHHHHHHHHHhhhhhcCCCeEEecCCCCCC------------------------CC-----CHHHHHHHHH
Confidence 4566777888888888887765 3678999999999985 33 7778888877
Q ss_pred HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC--CCCC-cEEEcCCcHHHHHHHHHHHhcCCCCE--EEEc-----
Q 041151 92 YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP--SDPE-LIFLTDGASKGVMQTLNCVIRGEGDG--VVLL----- 161 (463)
Q Consensus 92 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~--~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~--Vlvp----- 161 (463)
.+. ....|+++.|.++||+++|+|+++++|++ ++++ +|++|+|+++++..++.+++ +|||. |++|
T Consensus 53 ~~~----~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~-~~gd~~~vlv~~P~y~ 127 (393)
T TIGR03538 53 NLH----GLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVI-NPGQAPLVVMPNPFYQ 127 (393)
T ss_pred Hhh----ccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHc-CCCCcceEEecCCCCc
Confidence 654 34789999999999999999999988886 7885 89999999999999999998 89986 8886
Q ss_pred --------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 162 --------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 162 --------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
.|+++ .++++.+|+ +++++.+.+ ++|+|+++|||||||.++|.+++++|+++|++|+++
T Consensus 128 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~~~~------~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ 200 (393)
T TIGR03538 128 IYEGAALLAGAEPYFLNCTAENGFLPDF-DAVPESVWR------RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFI 200 (393)
T ss_pred chHHHHHhcCCeEEEeeccccCCCCCCH-HHHHHHHhh------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEE
Confidence 46665 244588999 999998876 799999999999999999999999999999999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hc
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IA 306 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~ 306 (463)
||+||+|.++.+++..+..+........+. +..+++|+++||||.| ++||+|+||++ +++++++.+.++.. ..
T Consensus 201 ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vi~i~S~SK~~-~~~GlRvG~~i---~~~~l~~~~~~~~~~~~ 274 (393)
T TIGR03538 201 IASDECYSELYFDEGNPPAGLLQAAAQLGR--DDFRRCLVFHSLSKRS-NLPGLRSGFVA---GDAEILKAFLRYRTYHG 274 (393)
T ss_pred EEECcchhhcccCCCCCCcCHHHhcccccc--cccccEEEEecchhhc-CCcccceEEEe---cCHHHHHHHHHHHHhhc
Confidence 999999999887322233333222222200 1345899999999998 89999999999 68999999988775 45
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHH
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEA 386 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~ 386 (463)
++++.+.|.++...+.. .++.++.++.|+++++.+.+.|++. +.+..|+|++|+|++++ .
T Consensus 275 ~~~~~~~q~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~gg~f~~~~~~--~----- 334 (393)
T TIGR03538 275 CAMPIPTQLASIAAWND-----------EQHVRENRALYREKFAAVLEILGQV--LDLELPDAGFYLWPKVP--G----- 334 (393)
T ss_pred cCcCHHHHHHHHHHhcC-----------hHHHHHHHHHHHHHHHHHHHHHHhh--CcccCCCeeEEEEEECC--C-----
Confidence 67889999998777641 2334567888999999999999874 45678999999997654 1
Q ss_pred HhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC-----CCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 387 AKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ-----KEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~-----~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
++.+++..+++++||.+.||+.|+. .++.+++|||++.+++++++++++|+++
T Consensus 335 -------~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 335 -------DDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVAPLEECVEAAERIRSF 392 (393)
T ss_pred -------CHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecCCHHHHHHHHHHHHHh
Confidence 2456677777889999999999863 2345799999997789999999999875
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=395.44 Aligned_cols=354 Identities=22% Similarity=0.344 Sum_probs=285.3
Q ss_pred HHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHH
Q 041151 34 QKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVR 113 (463)
Q Consensus 34 ~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr 113 (463)
+..|+++|+|++|+|+... ..+. |+.+.+++.+++.. ....+|++..|.++||
T Consensus 27 ~~~~~~~i~l~~G~p~~~~--------------------~~~~-----~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~lr 79 (409)
T PLN02656 27 EENGKRVISLGMGDPTAYS--------------------CFHT-----THVAQEAVVDALQS--NKFNGYAPTVGLPQAR 79 (409)
T ss_pred cccCCeeeecCCCCCCcCC--------------------CCCC-----CHHHHHHHHHHHhc--CCCCCCCCCCCCHHHH
Confidence 3467889999999998300 0133 78888888887775 2457899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee------cCCCcccC
Q 041151 114 KEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW------KRQQIGVL 174 (463)
Q Consensus 114 ~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~------~~~~~~~d 174 (463)
+++++|+++.+|+.+++++|++|+|+++++..++.+++ ++||+|+++ .|+++ ..+++.+|
T Consensus 80 ~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d 158 (409)
T PLN02656 80 RAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLA-RPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVD 158 (409)
T ss_pred HHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHh-CCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCC
Confidence 99999999888999999999999999999999999998 999999997 45555 23468899
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHh
Q 041151 175 IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMD 254 (463)
Q Consensus 175 ~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 254 (463)
+ +.+++.+++ ++++|++++||||||.++|.+++++|+++|++++++||+||+|.++.| ++....++..+
T Consensus 159 ~-~~l~~~~~~------~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~--- 227 (409)
T PLN02656 159 L-DAVEALADQ------NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAF-GSNPFVPMGVF--- 227 (409)
T ss_pred H-HHHHHHhcc------CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc-CCCCcccHHHh---
Confidence 9 999998876 789999999999999999999999999999999999999999999988 34344454443
Q ss_pred cCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC-----ChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCc
Q 041151 255 MGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI-----PPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 255 ~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
+...++|+++||||+| ++||+|+||++.++. ++++++++.+......+++.+.|.++..++++..
T Consensus 228 -----~~~~~vi~~~SfSK~f-~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~---- 297 (409)
T PLN02656 228 -----GSIVPVLTLGSLSKRW-IVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILEQTD---- 297 (409)
T ss_pred -----cccCcEEEEcccchhc-cCcceeEEEEEEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHhcCc----
Confidence 3345799999999999 899999999995210 3578888887765345678999999999986311
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCe
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGI 408 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI 408 (463)
..+.++.++.++++++.+.+.|++++++. +..|+|++|+|++++.+.. .+..++.+++..+++++||
T Consensus 298 -----~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~-------~~~~~~~~~~~~~l~~~gV 365 (409)
T PLN02656 298 -----ESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLL-------EDISDDIDFCFKLAREESV 365 (409)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhc-------CCCCCHHHHHHHHHHhCCE
Confidence 23345578889999999999999886554 3578999999977642100 0011345667788899999
Q ss_pred EeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 409 STVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 409 ~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+.||+.|+. .+++||+++.+++++++++++|++++.++.
T Consensus 366 ~v~pg~~fg~---~~~iRi~~~~~~e~l~eal~rl~~~~~~~~ 405 (409)
T PLN02656 366 IILPGTAVGL---KNWLRITFAADPSSLEEALGRIKSFYLRHS 405 (409)
T ss_pred EEecchhcCC---CCeEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999974 348999999888999999999999887654
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=392.93 Aligned_cols=375 Identities=26% Similarity=0.425 Sum_probs=295.1
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
..|+++.+++++.+.++...+++.+..|+++++|+.|+|+.++. |. |+.+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~---------------------~~-----~~~i~~~~ 58 (404)
T PRK09265 5 EKSSKLENVCYDIRGPVLKEAKRLEEEGHKILKLNIGNPAPFGF---------------------EA-----PDEILRDV 58 (404)
T ss_pred chhHHHHhcCcchhHHHHHHHHHHHHcCCCeEEecCCCCCcCCC---------------------CC-----CHHHHHHH
Confidence 34566778888988888888888888888999999999974221 33 77888888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.. ...|+++.|.++||+++|+++..+++..+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 59 ~~~~~~----~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~p~y~~~~ 133 (404)
T PRK09265 59 IRNLPT----AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALL-NNGDEVLVPAPDYPLWT 133 (404)
T ss_pred HHHhhc----CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhC-CCCCEEEEeCCCCcChH
Confidence 776543 3689999999999999999997655447899999999999999999999997 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ + ..++.+|+ +.+++.+++ ++++|+++|||||||.+++.+++++|+++|+++|++||+
T Consensus 134 ~~~~~~g~~~v~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~ 206 (404)
T PRK09265 134 AAVSLSGGKPVHYLCDEEAGWFPDL-DDIRSKITP------RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFA 206 (404)
T ss_pred HHHHHcCCEEEEEecccccCCCCCH-HHHHHhccc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45444 1 23577899 999998876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh----HHHHHHhhhhhc
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK----TVDEIYKIASIA 306 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~l~~~~~~~ 306 (463)
||+|.++.| ++....++..+ +.+.++|+++||||+| |+||+|+||++++ ++++ +++.+.......
T Consensus 207 De~y~~~~~-~~~~~~~~~~~--------~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~-~~~~~~~~~~~~~~~~~~~~ 275 (404)
T PRK09265 207 DEIYDKILY-DGAVHISIASL--------APDLLCVTFNGLSKAY-RVAGFRVGWMVLS-GPKKHAKGYIEGLDMLASMR 275 (404)
T ss_pred ehhhhhccC-CCCCcCCHHHc--------CCCceEEEEecchhhc-cCcccceEEEEEe-CchHHHHHHHHHHHHHhccc
Confidence 999999888 34444555543 3334799999999999 8999999999952 1443 344443333335
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHH
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEA 386 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~ 386 (463)
++++.+.|.++..+|... ..+..+. +.++.+.++++.+.+.|++++|+.+..|+|++|+|++++....
T Consensus 276 ~~~~~~~q~~~~~~l~~~----~~~~~~~----~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~l~~~~~~~~~---- 343 (404)
T PRK09265 276 LCANVPAQHAIQTALGGY----QSINELI----LPGGRLYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVY---- 343 (404)
T ss_pred cCCCcHHHHHHHHHhcCc----hhHHHHH----HHHHHHHHHHHHHHHHHhcCCCCcccCCCcceEEEEEeccccc----
Confidence 678999999999998532 1111121 1234577889999999998888998999999999976642110
Q ss_pred HhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 387 AKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..++.+++.+++.++||.+.||+.|+.. +.+++||+++.+++++++++++|+++++++
T Consensus 344 ----~~~~~~~~~~~~l~~~gv~v~pg~~F~~~-~~~~~Ri~~~~~~e~l~~~l~rl~~~l~~~ 402 (404)
T PRK09265 344 ----PIHDDEQFVLDLLLQEKVLLVQGTGFNWP-EPDHFRIVTLPRVDDLEEAIGRIGRFLSGY 402 (404)
T ss_pred ----CCCCHHHHHHHHHHhCCEEEECchhhCCC-CCCeEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence 11235566778899999999999999752 456999999988899999999999988754
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=393.82 Aligned_cols=352 Identities=20% Similarity=0.300 Sum_probs=275.9
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
.++++|+|+.|+|+.++. .+. |+.+.+++.+++.. ....+|++..|.++||++
T Consensus 30 ~~~~~i~l~~G~p~~~~~--------------------~~~-----p~~~~~a~~~~~~~--~~~~~Y~~~~G~~~lr~a 82 (409)
T PLN00143 30 DHRLAISFGFGDPSCFEC--------------------FRT-----TNIAEDAIVEAVRS--AKFNSYAPTGGILPARRA 82 (409)
T ss_pred CCCceeeCCCCCCCCCCC--------------------CCC-----CHHHHHHHHHHHhC--cCCCCCCCCCCCHHHHHH
Confidence 577899999999982111 133 88888888888775 245679999999999999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee------cCCCcccChH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW------KRQQIGVLII 176 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~------~~~~~~~d~~ 176 (463)
+|+|+.+++|+++++++|++|+|+++++..++.+++ ++||.|+++ .|.++ ..++|.+|+
T Consensus 83 ia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~- 160 (409)
T PLN00143 83 IADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLA-RPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDL- 160 (409)
T ss_pred HHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHc-CCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCH-
Confidence 999999999999999999999999999999999998 999999997 45555 235688999
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.|++++++ ++++++++|||||||.+++.+++++|+++|++|+++||+||+|.++.| ++.+..++..+
T Consensus 161 ~~l~~~~~~------~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~-~~~~~~~~~~~----- 228 (409)
T PLN00143 161 DAVEAIADE------NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVF-GSKPFVPMGLF----- 228 (409)
T ss_pred HHHHHhccc------CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEcccccccc-CCCCCcchhhh-----
Confidence 999988866 789999999999999999999999999999999999999999999988 33333444333
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH------HHHHhhhhhcccCChHHHHHHHHhcCCCCCCCch
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV------DEIYKIASIALSPNVPAQIFMGLMVNPLKPGDIS 330 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~ 330 (463)
+...++|+++||||.| ++||+|+||++.++ ++.++ +.+.+.......++.+.|.++..+|.+.
T Consensus 229 ---~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~------ 297 (409)
T PLN00143 229 ---ASIVPVITLGSISKRW-MIPGWGLGWLVTCD-PSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILEKT------ 297 (409)
T ss_pred ---cccCcEEEEccchhhc-CCCccceEEEEeeC-chhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHhcC------
Confidence 3345799999999999 89999999999411 23333 3333333323345889999999888521
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeE
Q 041151 331 YEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIS 409 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~ 409 (463)
...+.++.++.++++++.+.+.|+++++..+ ..|+|++|+|++++ ... ..+..++.+++..+++++||.
T Consensus 298 ---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~--~~~-----~~~~~~~~~~~~~ll~~~gV~ 367 (409)
T PLN00143 298 ---TEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLN--LLL-----LEDIEDDMEFCLKLAKEESLI 367 (409)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecc--hhh-----cCCCCCHHHHHHHHHHhCCEE
Confidence 1223445677788888889999988755443 46899999997664 100 001123567777888999999
Q ss_pred eeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 410 TVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 410 v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+.||..|+. .+++||+++.+.+++++++++|+++++++.+
T Consensus 368 v~pg~~f~~---~~~iRi~~~~~~~~l~~al~rl~~~l~~~~~ 407 (409)
T PLN00143 368 ILPGVTVGL---KNWLRITFAVEQSSLEDGLGRLKSFCGRHAK 407 (409)
T ss_pred EeCccccCC---CCeEEEEEcCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999974 3589999998789999999999999876654
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=389.90 Aligned_cols=364 Identities=21% Similarity=0.328 Sum_probs=299.5
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++.+.+++.++.+...+.+.+..+.++++|+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~~ 53 (388)
T PRK07337 3 LAARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDF------------------------TA-----PEPVVEAAA 53 (388)
T ss_pred hhhHhHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCCCC------------------------CC-----CHHHHHHHH
Confidence 5778888888999999988888887788899999999985 33 677888887
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ....|++..|.++||+++|+|+++++|+.+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 ~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~ 129 (388)
T PRK07337 54 RALRR---GVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALV-ERGDEVLMPDPSYPCNRH 129 (388)
T ss_pred HHHhc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHH
Confidence 77664 35679999999999999999999889999999999999999999999999998 999999997
Q ss_pred ----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|+++ + ...+++|+ +.+++.+.+ ++++|++++||||||.+++.+++++|+++|++++++||+|
T Consensus 130 ~~~~~g~~~~~~~~~~~~~~~~~~-~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D 202 (388)
T PRK07337 130 FVAAAEGRPVLVPSGPAERFQLTA-ADVEAAWGE------RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVD 202 (388)
T ss_pred HHHHcCCEEEEeecCCccCCcCCH-HHHHhhcCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45555 2 34678999 999998876 7899999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|.++.|. +. ..++..+ + +++|+++||||.| |+||+|+||++ +++++++.+.+... ...+++
T Consensus 203 e~y~~~~~~-~~-~~~~~~~--------~--~~vi~~~S~SK~~-~~~G~RiG~~~---~~~~l~~~l~~~~~~~~~~~s 266 (388)
T PRK07337 203 EIYQGLSYD-AA-PVSALSL--------G--DDVITINSFSKYF-NMTGWRLGWLV---VPEALVGTFEKLAQNLFICAS 266 (388)
T ss_pred ccccccccC-CC-CcChhhc--------c--CCEEEEEechhhc-CCchhheeeee---cCHHHHHHHHHHHHHhccCCC
Confidence 999998773 32 2333221 2 3689999999999 89999999999 58889999988875 456789
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHHHHhh
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
.+.|.++..++.+. .+ .+.++.++.|+++++.+.+.|+++ |+.+ ..|+|++|+|++++-...
T Consensus 267 ~~~q~~~~~~l~~~-----~~----~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~~------- 329 (388)
T PRK07337 267 ALAQHAALACFEPD-----TL----AIYERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAH------- 329 (388)
T ss_pred hHHHHHHHHHhccC-----ch----HHHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEEecccccC-------
Confidence 99999998888532 11 223456888999999999999987 7664 478999999977642100
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
.+..++.+++..+++++||.+.||+.|+...+.+++||+++.+++++++++++|++++
T Consensus 330 ~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~~~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 330 PAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYATSMSRLEEAVARLGKLF 387 (388)
T ss_pred CCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEecCCHHHHHHHHHHHHHHh
Confidence 0012356777788889999999999998644567999999977899999999998764
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=389.75 Aligned_cols=363 Identities=19% Similarity=0.280 Sum_probs=293.1
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
++++++.+++++.+..+....+ ..++++|+.|.|+. +. |+.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~g~p~~------------------------~~-----p~~~~~~~ 48 (387)
T PRK08912 3 MGNPVFADLPTTIFEVMSQLAR-----EHGAINLGQGFPDD------------------------PG-----PEDVRRAA 48 (387)
T ss_pred hhhHHHhhCCCCHHHHHHHHHh-----hCCeEEccCCCCCC------------------------CC-----CHHHHHHH
Confidence 4577888888887666554432 24689999999985 33 77788887
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+.. ...+|+++.|.++||+++++++.+.+|+.++++ +|++|+|+++++..++.+++ ++||+|+++
T Consensus 49 ~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~ 124 (387)
T PRK08912 49 ADALLD---GSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAY 124 (387)
T ss_pred HHHHhc---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhh
Confidence 776654 346899999999999999999998889999998 99999999999999999998 899999997
Q ss_pred ------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 ------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 ------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ ...++++|+ +.+++.+.+ ++++|++++||||||.++|.+++++|+++|++++++||+
T Consensus 125 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 125 LPLIRRAGGVPRLVRLEPPHWRLPR-AALAAAFSP------RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred HHHHHHcCCEEEEEecCcccCcCCH-HHHHHHhCc------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEE
Confidence 56665 234688999 999998876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.|+ +....++..+ + ...+++|+++||||.| |++|+|+||++ +++++++.+.+... ..++.
T Consensus 198 De~y~~~~~~-~~~~~~~~~~-~------~~~~~~i~~~S~SK~~-g~~GlRiG~~~---~~~~~~~~l~~~~~~~~~~~ 265 (387)
T PRK08912 198 DEVWEHVVFD-GRRHIPLMTL-P------GMRERTVKIGSAGKIF-SLTGWKVGFVC---AAPPLLRVLAKAHQFLTFTT 265 (387)
T ss_pred hhhhhhcccC-CCCCcChhhC-C------CccCceEEEeechhhc-cCcCceeEEEe---cCHHHHHHHHHHHhhccccC
Confidence 9999998883 3334444332 1 1134799999999999 99999999999 58999999987765 45677
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+...|.++..++... ..+.+++++.++++++.+.+.|+.. |+.+.+|+|+||+|+++.....
T Consensus 266 ~~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g~~~l~~~l~~~~~------- 327 (387)
T PRK08912 266 PPNLQAAVAYGLGKP----------DDYFEGMRADLARSRDRLAAGLRRI-GFPVLPSQGTYFLTVDLAPLGL------- 327 (387)
T ss_pred ChHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEecccccCC-------
Confidence 778888888877421 2233467888999999999999998 8888899999999966542000
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCC-CCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQ-KEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
..++.+++..+++++||.+.||..|+. .++.+++||+++.+++++++++++|++++++
T Consensus 328 --~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~~~~l~~~l~rl~~~l~~ 386 (387)
T PRK08912 328 --AEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKRDATLDEAVERLAAARRR 386 (387)
T ss_pred --CCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 013566777777889999999999964 2345799999997789999999999987753
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-48 Score=388.96 Aligned_cols=369 Identities=25% Similarity=0.414 Sum_probs=295.6
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
++.++.+++ +.++++...+.+.+.+|+++|+|+.|.|... +.+. |+.+.+++.
T Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~---------------------~~~p-----~~~~~~~~~ 56 (398)
T PRK08363 4 ASERAMGVE-YAIRDVVLPARELEKKGIKVIRLNIGDPVKF---------------------DFQP-----PEHMKEAYC 56 (398)
T ss_pred hhHHHHhcc-HHHHHHHHHHHHHHhcCCCeEEEeCCCCCcC---------------------CCCC-----CHHHHHHHH
Confidence 567777776 4567777777777778889999999999510 0122 778888888
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ....|++..|.++||+++++|+++.+|+.+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 57 ~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~~ 132 (398)
T PRK08363 57 RAIKE---GHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILIPGPSYPPYTG 132 (398)
T ss_pred HHHHc---CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhC-CCCCEEEEcCCCCcchHH
Confidence 77765 23579989999999999999999989999999999999999999999999997 999999996
Q ss_pred ----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|+++ ..+++.+|+ +.+++.+.+ ++++|++++||||||.+++.+++++|+++|++++++||+|
T Consensus 133 ~~~~~g~~~v~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~D 205 (398)
T PRK08363 133 LVKFYGGVPVEYRTIEEEGWQPDI-DDIRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISD 205 (398)
T ss_pred HHHHcCCEEEEeccccccCCcCCH-HHHHhhCCc------ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEh
Confidence 45544 234567899 999998876 7899999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh----hcc
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS----IAL 307 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~----~~~ 307 (463)
|+|.++.|. + ...++..+ +...++|+++||||+| ++||+|+||+++. +++++++.+.+... ..+
T Consensus 206 eay~~~~~~-~-~~~~~~~~--------~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~-~~~~~~~~l~~~~~~~~~~~~ 273 (398)
T PRK08363 206 EIYDLMTYE-G-KHVSPGSL--------TKDVPVIVMNGLSKVY-FATGWRLGYIYFV-DPEGKLAEVREAIDKLARIRL 273 (398)
T ss_pred hhhhhhccC-C-cccCHHHc--------CcCCcEEEEecchhcc-CCccceEEEEEEe-CcHHHHHHHHHHHHHHhcccc
Confidence 999998773 3 23344433 3344799999999998 8999999999841 15666666654432 246
Q ss_pred cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHH
Q 041151 308 SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAA 387 (463)
Q Consensus 308 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (463)
+++.+.|.++..+|.+. .+++++.++.++++++.+.+.|+++||+.+..|+|+||+|++++. ..
T Consensus 274 ~~s~~~q~~~~~~l~~~----------~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~~--~~---- 337 (398)
T PRK08363 274 CPNTPAQFAAIAGLTGP----------MDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPRIEE--GP---- 337 (398)
T ss_pred cCChHHHHHHHHHHhCC----------hHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEEEEEEecc--CC----
Confidence 78999999999888521 233445778899999999999998888888889999999965541 10
Q ss_pred hhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 388 KRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 388 ~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
..++.+++..+|+++||.+.||+.|+. .+.+|+|||++.+++++++++++|++++.+.
T Consensus 338 ----~~~~~~~~~~~l~~~gV~v~~g~~f~~-~~~~~iRis~~~~~~~l~~~l~~l~~~~~~~ 395 (398)
T PRK08363 338 ----WKDDKEFVLDVLHEAHVLFVHGSGFGE-YGAGHFRLVFLPPVEILEEAMDRFEEFMRER 395 (398)
T ss_pred ----CCCHHHHHHHHHHhCCEEEeCchhhCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 013556677888999999999999975 3556999999977899999999999988763
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=388.69 Aligned_cols=337 Identities=24% Similarity=0.418 Sum_probs=279.4
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
+++|+|+.|+|+. +. ++.+.+++.+.+.. ...+|++..|.++||+++|
T Consensus 20 ~~~i~l~~~~~~~------------------------~~-----~~~~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia 67 (378)
T PRK07682 20 EGVISLGVGEPDF------------------------VT-----PWNVREASIRSLEQ---GYTSYTANAGLLELRQEIA 67 (378)
T ss_pred CCeEEeCCCCCCC------------------------CC-----CHHHHHHHHHHHhc---CCCCCCCCCCcHHHHHHHH
Confidence 4689999999985 32 56677777776654 3567999999999999999
Q ss_pred HHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c---CCCcccChHH
Q 041151 118 EFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K---RQQIGVLIIN 177 (463)
Q Consensus 118 ~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~---~~~~~~d~~~ 177 (463)
+|+++++|+.++++ +|++|+|+++++..++.+++ +|||+|+++ .|+++ + .+++++|+ +
T Consensus 68 ~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~ 145 (378)
T PRK07682 68 KYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAII-NPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQP-A 145 (378)
T ss_pred HHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-CCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCH-H
Confidence 99999889988886 89999999999999999998 999999997 45554 2 34688999 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+|++++.+ ++++|++++||||||.++|.+++++|+++|++|+++||+||+|.++.|+ + .+.++..+.
T Consensus 146 ~l~~~~~~------~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~-~-~~~~~~~~~----- 212 (378)
T PRK07682 146 QIEAAITA------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYD-E-AYTSFASIK----- 212 (378)
T ss_pred HHHhhcCc------ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccC-C-CCCChhhcc-----
Confidence 99998876 7999999999999999999999999999999999999999999999883 2 233443331
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
+...++|+++||||+| |+||+|+||++ +++++++.+.+... ..++++.+.|.++..+|++.. .
T Consensus 213 --~~~~~~i~~~S~SK~~-~~~GlR~G~~~---~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~----------~ 276 (378)
T PRK07682 213 --GMRERTILISGFSKGF-AMTGWRLGFIA---APVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGN----------D 276 (378)
T ss_pred --cccCCEEEEecCcccc-cChhhhhhhhh---cCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCh----------H
Confidence 1124799999999999 89999999999 69999999987765 456788999999999986421 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
+.+++++.|+++++++.+.|+++ |+.+..|+|+||+|+.+... + .++.+++..+++++||.+.||..|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~g~~~~~~~~~~~-~----------~~~~~~~~~ll~~~gv~v~pg~~f 344 (378)
T PRK07682 277 DVIRMRDSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSISST-G----------LSSEEFAEQLLLEEKVAVVPGSVF 344 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCccCCCCeeEEEEEeccCC-C----------CCHHHHHHHHHHhCCEEEcCchhh
Confidence 24567888999999999999998 88888999999999765311 1 135667777777889999999999
Q ss_pred CCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 417 ~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+. .+.+++|||++.+.+++++++++|+++++++
T Consensus 345 ~~-~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~ 377 (378)
T PRK07682 345 GE-SGEGFIRCSYATSLEQLQEAMKRMKRFVENK 377 (378)
T ss_pred Cc-CCCCeEEEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 75 3457999999987899999999999988654
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=390.76 Aligned_cols=330 Identities=21% Similarity=0.343 Sum_probs=281.8
Q ss_pred CCcHHHHHHHHH-HhhhcCCC-CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 80 VFPADAIARAKH-YLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 80 ~~p~~~~~a~~~-~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
+||...++.+.. .+...... ...|.++.|.++||++|++++...+|+.+++++|++|+|+++++.+++..++ +|||+
T Consensus 103 ~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~-~pGd~ 181 (459)
T COG1167 103 LFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLL-DPGDT 181 (459)
T ss_pred cCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhC-CCCCE
Confidence 468777777754 44433233 6789999999999999999998889999999999999999999999999998 89999
Q ss_pred EEEc-------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHH
Q 041151 158 VVLL-------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 158 Vlvp-------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~ 220 (463)
|+++ +|.++ +.+..++|+ +.|++.++.. ++|++|++ +.+||||.++|.++.++|+++
T Consensus 182 v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~-e~le~~~~~~-----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~l 255 (459)
T COG1167 182 VLVEDPTYPGALQALEALGARVIPVPVDEDGIDP-EALEEALAQW-----KPKAVYVTPTFQNPTGVTMSLERRKALLAL 255 (459)
T ss_pred EEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCH-HHHHHHHhhc-----CCcEEEECCCCCCCCCCccCHHHHHHHHHH
Confidence 9996 67777 778999999 9999999975 79999988 889999999999999999999
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|++||++||+||+|+++.| ++.+..++..+ +..++||+++||||+++ ||+|+||++ +++++++.+.
T Consensus 256 A~~~~~~IIEDD~y~el~~-~~~p~~~l~~l--------d~~~rViy~gSFSK~l~--PglRlG~vv---~p~~~~~~~~ 321 (459)
T COG1167 256 AEKYDVLIIEDDYYGELRY-DGPPPPPLKAL--------DAPGRVIYLGSFSKTLA--PGLRLGYVV---APPELIEKLL 321 (459)
T ss_pred HHHcCCeEEeeCcchhhhc-CCCCCCChHhh--------CCCCCEEEEeeehhhcc--cccceeeee---CCHHHHHHHH
Confidence 9999999999999999999 45555566665 66679999999999995 999999999 6999999999
Q ss_pred hhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-CcccccCCceeEEeeec
Q 041151 301 KIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC-R-NVVCNFTEGAMYSFPQI 377 (463)
Q Consensus 301 ~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-p-g~~~~~~~g~~~~~~~~ 377 (463)
..+. ...+++.+.|.+++..+.+ +. +.++.++++..|+++++.+.+.|.+. | ++.+..|.||||+|+.
T Consensus 322 ~~k~~~~~~~s~~~Q~~la~~l~~-----G~---~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~- 392 (459)
T COG1167 322 RLKQAADLGPSSLSQAALAAFLLS-----GH---YDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLE- 392 (459)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHc-----CC---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEE-
Confidence 8886 7899999999999999874 33 44556678999999999999999985 4 6888999999999954
Q ss_pred cCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCCCCCC-CCcEEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 041151 378 RLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGFGQKE-GIFHLRTTIL-PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~~~~-~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+|.++ ++.. +...+.++||.+.| |..|.... ..+++|++++ .+++++++++++|.+++.+..
T Consensus 393 -l~~~~----------~~~~-l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 393 -LPEGI----------DARE-LLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPSEEEIEEGIKRLAALLREAA 457 (459)
T ss_pred -cCCCC----------CHHH-HHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 44432 2344 45566778999999 88887643 4568999999 889999999999999988764
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=386.71 Aligned_cols=363 Identities=19% Similarity=0.288 Sum_probs=288.2
Q ss_pred chhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCC
Q 041151 20 YAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGG 99 (463)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~ 99 (463)
..+++.+...+++.+..++++++|+.|+|+..+ +.+. ++.+.+++.+.+.. ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~--------------------~~~~-----~~~~~~~~~~~~~~--~~ 65 (401)
T TIGR01264 13 VNPIRAIVDNMKVKPNPEKPMIKLSIGDPTVFG--------------------NLPT-----DPEVMQAMKDSLDS--GK 65 (401)
T ss_pred hhHHHHHHHHHHhhhhcCCCeeecCCCCCCCcC--------------------CCCC-----CHHHHHHHHHHHhc--cC
Confidence 444777887888777777889999999996200 0122 77888888777665 24
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW 166 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~ 166 (463)
...|++..|.++||+++++++++ ++..+++++|++|+|+++++..++.+++ ++||+|+++ .|.++
T Consensus 66 ~~~Y~~~~g~~~lr~aia~~~~~-~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~v~i~~P~y~~~~~~~~~~g~~v 143 (401)
T TIGR01264 66 YNGYAPTVGALSAREAIASYYHN-PDGPIEADDVVLCSGCSHAIEMCIAALA-NAGQNILVPRPGFPLYETLAESMGIEV 143 (401)
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHEEECcChHHHHHHHHHHhC-CCCCEEEEeCCCChhHHHHHHHcCCEE
Confidence 56799999999999999999976 4667899999999999999999999998 899999997 56665
Q ss_pred ------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 167 ------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 167 ------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
.+.++++|+ +.+++.+++ ++++|++++||||||.+++.+++++|+++|++++++||+||+|.++.|
T Consensus 144 ~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~- 215 (401)
T TIGR01264 144 KLYNLLPDKSWEIDL-KQLESLIDE------KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVF- 215 (401)
T ss_pred EEeecCCccCCCCCH-HHHHHHhcc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhcc-
Confidence 233688999 999998876 789999999999999999999999999999999999999999999988
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh---hHHHHHHhhhhhcccCChHHHHHH
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP---KTVDEIYKIASIALSPNVPAQIFM 317 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~q~~~ 317 (463)
++....++..+ +...++|+++||||+| ++||+|+||++.++... ++++.+.++....++++.+.|.++
T Consensus 216 ~~~~~~~~~~~--------~~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~ 286 (401)
T TIGR01264 216 SGATFEPLASL--------SSTVPILSCGGLAKRW-LVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGAL 286 (401)
T ss_pred CCcccccHHHc--------CCCCcEEEEccCcccC-CCccceEEEEEecCcchhHHHHHHHHHHHhhccCCCCcHHHHHH
Confidence 33344455444 3334699999999999 89999999999521001 344555554433467889999999
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC---ChhhHHHHhhcCCCC
Q 041151 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL---PPKAIEAAKRAGKVP 394 (463)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~ 394 (463)
..+|.+. ...++++.++.++++++.+.+.|+++||+.+..|+||+|+|++++. |. ..+
T Consensus 287 ~~~l~~~---------~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~----------~~~ 347 (401)
T TIGR01264 287 PSILLRT---------PQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPE----------FKN 347 (401)
T ss_pred HHHHHhC---------cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCC----------CCC
Confidence 9988521 1234556788899999999999999878888889999999977642 21 113
Q ss_pred hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 395 DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 395 ~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+.+++..+++++||.+.||+.|+. .+++||+++.+++++++++++|+++++++
T Consensus 348 ~~~~~~~l~~~~gI~v~pg~~f~~---~~~iRis~~~~~~~l~~~l~rl~~~~~~~ 400 (401)
T TIGR01264 348 DVEFTERLVAEQSVFCLPGSCFEY---PGFFRVVLTVPVVMMEEACSRIQEFCERH 400 (401)
T ss_pred HHHHHHHHHHhCCEEEeCchhcCC---CCeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 566777777889999999999974 24899999977899999999999988654
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=388.75 Aligned_cols=352 Identities=20% Similarity=0.313 Sum_probs=280.4
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
.++++|+|+.|.|+. ++. ... |+.+.+++.+.+.. ....+|+++.|.++||++
T Consensus 31 ~~~~~i~l~~g~p~~-----------------~~~---~~p-----~~~~~~a~~~~~~~--~~~~~Y~~~~G~~~Lr~a 83 (412)
T PTZ00433 31 SPKSIIKLSVGDPTL-----------------DGN---LLT-----PAIQTKALVEAVDS--QECNGYPPTVGSPEAREA 83 (412)
T ss_pred CCCCeeecCCcCCCC-----------------cCC---CCC-----CHHHHHHHHHHhhc--CCCCCCCCCCCcHHHHHH
Confidence 678899999999983 000 011 67778877776664 245789999999999999
Q ss_pred HHHHHHHhc------CCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee------cCCC
Q 041151 116 VAEFIERRD------GYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW------KRQQ 170 (463)
Q Consensus 116 ia~~~~~~~------g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~------~~~~ 170 (463)
||+|+++++ |..+++++|++|+|+++++..++.+++ ++||+|+++ .|+++ .+.+
T Consensus 84 ia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~ 162 (412)
T PTZ00433 84 VATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKD 162 (412)
T ss_pred HHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEecCcccc
Confidence 999998765 467899999999999999999999998 899999997 56665 2346
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
+++|+ +.|++.+++ ++++|+++|||||||.+++.+++++|+++|+++|++||+||+|.++.|+ +....++..
T Consensus 163 ~~~d~-~~l~~~~~~------~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~ 234 (412)
T PTZ00433 163 WEADL-DEIRRLVDD------RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFN-GATFTSVAD 234 (412)
T ss_pred CcCCH-HHHHHHhcc------CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccC-CCCccchhh
Confidence 79999 999998876 7999999999999999999999999999999999999999999998883 333345544
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC---CChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCC
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN---IPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPG 327 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 327 (463)
+ +...++|+++||||.| |+||+|+||+++.+ .++++++.+.+.....++++.+.|.++..++.+.
T Consensus 235 ~--------~~~~~~i~~~SfSK~~-~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~--- 302 (412)
T PTZ00433 235 F--------DTTVPRVILGGTAKNL-VVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALLNT--- 302 (412)
T ss_pred c--------cCCCceEEEccchhhc-CCCCeeEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHhcC---
Confidence 3 3333689999999999 89999999999511 0245777777765534688999999999888531
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC
Q 041151 328 DISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG 407 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 407 (463)
. ..++++.++.++++++.+.+.|++..|+.+..|+|++|+|++++... + .+..++.+++..+++++|
T Consensus 303 ---~---~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~-~------~~~~~~~~~~~~ll~~~g 369 (412)
T PTZ00433 303 ---P---QEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEK-F------RDIKSDVEFYEKLLEEEN 369 (412)
T ss_pred ---c---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhh-c------CCCCCHHHHHHHHHHhcC
Confidence 1 23455678889999999999999866888889999999997654210 0 001135677777777899
Q ss_pred eEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 408 ISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 408 I~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|.+.||+.|+. .+++||+++..++++++++++|++++++++
T Consensus 370 V~v~pg~~f~~---~~~iRis~~~~~e~l~~al~~l~~~~~~~~ 410 (412)
T PTZ00433 370 VQVLPGEIFHM---PGFTRLTISRPVEVLREAVERIKAFCERHK 410 (412)
T ss_pred EEEeCccccCC---CCeEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999975 248999999778899999999999987665
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=384.70 Aligned_cols=362 Identities=21% Similarity=0.327 Sum_probs=295.6
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.|+.++.+.....++++.... +...++|+|+.|+|+. +. ++.+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~ 55 (391)
T PRK08361 9 FIAGRINLIQRSKIRELFERA----SKMENVISLGIGEPDF------------------------DT-----PKNIKEAA 55 (391)
T ss_pred chhHHHHhCCccHHHHHHHHH----HhhcCeEEcCCCCCCC------------------------CC-----CHHHHHHH
Confidence 568888888888777765543 2235689999999985 33 67788887
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+++.. ....|++..|.++||+++|+++++.+|..+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 56 ~~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~g~~Vlv~~p~y~~~~ 131 (391)
T PRK08361 56 KRALDE---GWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLL-EEGDEVIIPDPAFVCYV 131 (391)
T ss_pred HHHHhc---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCCcccH
Confidence 777664 34679888999999999999998888988999999999999999999999997 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + +.++.+|+ +.+++.+++ ++++|++++||||||.+++.+++++|+++|++++++||+
T Consensus 132 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~i~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK08361 132 EDAKIAEAKPIRIPLREENEFQPDP-DELLELITK------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILS 204 (391)
T ss_pred HHHHHcCCEEEEEecCCccCCCCCH-HHHHHhccc------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEE
Confidence 55555 2 23577999 999999887 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.| ++....++... + ..++|+++||||+| |++|+|+||++ +++++++.+.+... ..+++
T Consensus 205 De~y~~~~~-~~~~~~~~~~~--------~-~~~~i~~~s~SK~~-~~~GlRiG~~~---~~~~~~~~~~~~~~~~~~~~ 270 (391)
T PRK08361 205 DEPYEHFLY-EGAKHYPMIKY--------A-PDNTILANSFSKTF-AMTGWRLGFVI---APEQVIKDMIKLHAYIIGNV 270 (391)
T ss_pred Eccccccee-CCCCCCCHhhc--------C-CCCEEEEecCchhc-CCcHhhhhhhc---cCHHHHHHHHHHHhhhccCC
Confidence 999999887 33333444332 2 23789999999999 99999999999 58899998887765 45788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..++.+.. +. .+.++.++.++++++.+.+.|++++|+.+..|+|++|+|++++. .+
T Consensus 271 ~~~~q~~~~~~l~~~~-----~~---~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~-~~------- 334 (391)
T PRK08361 271 ASFVQIAGIEALRSKE-----SW---KAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDE-TG------- 334 (391)
T ss_pred ChHHHHHHHHHhcCCc-----cc---HHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCC-CC-------
Confidence 8999999999986432 21 23456788899999999999999888999999999999966641 11
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
.++.++...+++++||.+.||..|+. .+.+++||+++.+++++++++++|++++++
T Consensus 335 ---~~~~~l~~~l~~~~gv~v~pg~~f~~-~~~~~iRi~~~~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 335 ---MSSEDFAEWLLEKARVVVIPGTAFGK-AGEGYIRISYATSKEKLIEAMERMEKALEE 390 (391)
T ss_pred ---CCHHHHHHHHHHhCCEEEcCchhhCC-CCCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 13556666667788999999999975 345799999997778999999999988864
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=359.12 Aligned_cols=339 Identities=19% Similarity=0.288 Sum_probs=295.0
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
++++.|.+.+.|+ +. |+.+++++.+.+.. ...+|+ .+..++-++|+
T Consensus 25 ~DvlPmWVADMDf------------------------~~-----pp~i~~Al~~rvdh---GvfGY~--~~~~~~~~ai~ 70 (388)
T COG1168 25 EDVLPMWVADMDF------------------------PT-----PPEIIEALRERVDH---GVFGYP--YGSDELYAAIA 70 (388)
T ss_pred CCcceeeeecccC------------------------CC-----CHHHHHHHHHHHhc---CCCCCC--CCCHHHHHHHH
Confidence 6788888888886 55 99999999999887 667887 56788999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee-------cCCCcccChHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW-------KRQQIGVLIIN 177 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~-------~~~~~~~d~~~ 177 (463)
+|..++|++.+.++.|++++|...++..++++|. +|||.|++. .|.++ .+..+.+|+ +
T Consensus 71 ~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T-~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~-~ 148 (388)
T COG1168 71 HWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT-KPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDF-D 148 (388)
T ss_pred HHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC-cCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecH-H
Confidence 9999999999999999999999999999999998 999999995 66666 455688899 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
.||+.+.+. ++|++++||||||||.+|+.++|.+|.++|++||+.||+||+|+++.+ .+..+.++..+.+.+
T Consensus 149 ~LE~~~~~~-----~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~-~g~~h~~~a~ls~~~-- 220 (388)
T COG1168 149 ALEKAFVDE-----RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVL-GGHKHIPFASLSERF-- 220 (388)
T ss_pred HHHHHHhcC-----CccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccc-cCCCccchhhcChhh--
Confidence 999999984 689999999999999999999999999999999999999999999999 456777777775554
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
. +++|++.|.||+| +++|+.++++++ .+++++.++.+... ...++|.++..|..++++ +-.
T Consensus 221 --a--~~~it~~saSKtF-NlaGL~~a~~Ii--~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~----------~G~ 283 (388)
T COG1168 221 --A--DNSITLTSASKTF-NLAGLKCAYIII--SNRELRAKFLKRLKRNGLHGPSALGIIATEAAYN----------QGE 283 (388)
T ss_pred --h--cceEEEeeccccc-cchhhhheeEEe--cCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----------hch
Confidence 2 4799999999999 999999999999 78888777765543 456788888888888765 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
.|++++.+.++.|++++.+.|++ +|++++..|+|.|.+|+|++-.. . ++.+....++++.+|.+.+|.
T Consensus 284 ~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~----------l-~d~~l~~~ll~~akVal~~G~ 352 (388)
T COG1168 284 PWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELG----------L-DDSELAEFLLEEAKVALSPGS 352 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccC----------C-ChHHHHHHHHHhhcEeccCCC
Confidence 77888999999999999999987 69999999999999999986321 1 245667788999999999999
Q ss_pred CCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
.||. .|++++|++++++.+.+++++++|+..+++
T Consensus 353 ~FG~-~g~gf~RlN~acpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 353 TFGE-EGSGFVRLNFACPRAILEEALERLKRALKK 386 (388)
T ss_pred ccCc-CCCceEEEecCCCHHHHHHHHHHHHHHHhc
Confidence 9998 578899999999999999999999988765
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=383.81 Aligned_cols=358 Identities=22% Similarity=0.320 Sum_probs=292.5
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHY 92 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~ 92 (463)
+++.+.+.+.++.+...+. ..+++++|+.|+|+. |. |+.+.+++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~------------------------~~-----~~~~~~~~~~~ 49 (382)
T PRK06108 3 PAARALPESGIREVANAGR----GREGVLPLWFGESDL------------------------PT-----PDFIRDAAAAA 49 (382)
T ss_pred hhhhhCCchHHHHHHHHHh----ccCCeEEecCCCCCC------------------------CC-----CHHHHHHHHHH
Confidence 4556677777777655443 234689999999986 44 78888888887
Q ss_pred hhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------
Q 041151 93 LSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL----------- 161 (463)
Q Consensus 93 ~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----------- 161 (463)
+.+ ....|+++.|.++||+++++++.+.+|+.+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 50 ~~~---~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~ 125 (382)
T PRK06108 50 LAD---GETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALV-GPGDEVVAVTPLWPNLVAAP 125 (382)
T ss_pred Hhc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHH
Confidence 765 33569999999999999999999888988999999999999999999999998 899999996
Q ss_pred --cCcee---c----CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 --FHTTW---K----RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 --~g~~~---~----~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|+++ + ..+|.+|+ +.|++.+++ ++++|++++||||||.+++.+++++|+++|++++++||+||
T Consensus 126 ~~~g~~~~~v~~~~~~~~~~~d~-~~l~~~~~~------~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De 198 (382)
T PRK06108 126 KILGARVVCVPLDFGGGGWTLDL-DRLLAAITP------RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADE 198 (382)
T ss_pred HHCCCEEEEeeCCCCCCCccCCH-HHHHHhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeh
Confidence 56665 2 23567999 999998876 79999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
+|.++.++.+....++..+. +..+++|+++||||.| |++|+|+||++ +++++++.+.+... ...+++.
T Consensus 199 ~y~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-g~~G~RiG~~~---~~~~~~~~~~~~~~~~~~~~~~ 267 (382)
T PRK06108 199 VYERLYYAPGGRAPSFLDIA-------EPDDRIIFVNSFSKNW-AMTGWRLGWLV---APPALGQVLEKLIEYNTSCVAQ 267 (382)
T ss_pred hhhhhccCCCCCCCCHhhcC-------CCcCCEEEEeechhhc-cCcccceeeee---CCHHHHHHHHHHHHhcccCCCh
Confidence 99999883133333443331 2234799999999999 89999999999 68999999987765 4567899
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcC
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
+.|.++..+|... ..+.++++++++++++.+.+.|++++|+.+..|+|++|+|++++ ..
T Consensus 268 ~~q~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~--~~--------- 326 (382)
T PRK06108 268 FVQRAAVAALDEG----------EDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIP--GV--------- 326 (382)
T ss_pred HHHHHHHHHHhCC----------hHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCC--CC---------
Confidence 9999999888532 12344677889999999999999888899999999999996654 21
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.++.+++..+++++||.+.||+.|+. .+.+++|||++.+++++++++++|+++++
T Consensus 327 -~~~~~~~~~ll~~~gV~v~pg~~f~~-~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 327 -TDSLALAKRLVDEAGLGLAPGTAFGP-GGEGFLRWCFARDPARLDEAVERLRRFLA 381 (382)
T ss_pred -CCHHHHHHHHHHhCCEEEeCchhhCC-CCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 13556777778889999999999974 34579999999888999999999998774
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=383.60 Aligned_cols=335 Identities=20% Similarity=0.310 Sum_probs=276.3
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
..+++|+|+.|.|+. +. ++.+.+++.+.+.. ....|+++.|.++||++
T Consensus 27 ~~~~~i~l~~g~p~~------------------------~~-----~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ 74 (384)
T PRK12414 27 AQHDALNLSQGAPNF------------------------AP-----DPALVEGVARAMRD---GHNQYAPMAGIAALREA 74 (384)
T ss_pred HhCCeEEcCCCCCCC------------------------CC-----CHHHHHHHHHHHHh---CCCCcCCCCCcHHHHHH
Confidence 345799999999985 33 77788888776654 34689999999999999
Q ss_pred HHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c--CCCcccChH
Q 041151 116 VAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K--RQQIGVLII 176 (463)
Q Consensus 116 ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~--~~~~~~d~~ 176 (463)
+++++.+++|+++++ ++|++|+|+++++..++.+++ +|||+|+++ .|+++ + .+++.+|+
T Consensus 75 ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~- 152 (384)
T PRK12414 75 LAEKTERLYGARYDPASEVTVIASASEGLYAAISALV-HPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNW- 152 (384)
T ss_pred HHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCH-
Confidence 999999888988776 589999999999999999998 999999997 56655 2 24678999
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.|++.+++ ++++|++++||||||.++|.+++++|+++|++++++||+||+|.++.|+ +.+..++..+ +
T Consensus 153 ~~l~~~l~~------~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~-~~~~~~~~~~-~--- 221 (384)
T PRK12414 153 DEVAAAITP------RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFD-GARHHSMARH-R--- 221 (384)
T ss_pred HHHHhhcCc------ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCC-CCCccCcccC-c---
Confidence 999998876 7999999999999999999999999999999999999999999998883 3333344332 1
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
...+++|+++||||.| |+||+|+||++ +++++++.+.+... ..++++.+.|.++..+|.+.. +.
T Consensus 222 ---~~~~~~i~~~SfSK~~-~~pGlRiG~~v---~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~--------~~ 286 (384)
T PRK12414 222 ---ELAERSVIVSSFGKSY-HVTGWRVGYCL---APAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPA--------SY 286 (384)
T ss_pred ---CccCcEEEEecccccc-cCccceEEEEe---cCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCCh--------HH
Confidence 1134799999999999 89999999999 68999999988875 567889999999999986421 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC-ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL-PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
.++++.|+++++.+.+.|++. |+.+.+|+|+||+|++++- +. .++.+++..+++++||.+.||+
T Consensus 287 ---~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gV~v~pg~ 351 (384)
T PRK12414 287 ---LGLGAFYQRKRDLLARELAGS-RFELLPSEGSFFMLARFRHFSD-----------ESDSDFVLRLIRDARVATIPLS 351 (384)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhC-CCeecCCCcceEEEEcccccCC-----------CCHHHHHHHHHHhCCEEEecch
Confidence 135778999999999999998 8888899999999976641 11 1256777788899999999999
Q ss_pred CCCCCC-CCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 415 GFGQKE-GIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 415 ~f~~~~-~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.|+... +.+++||+++.+++++++++++|++
T Consensus 352 ~f~~~~~~~~~iRis~~~~~~~~~~~~~rl~~ 383 (384)
T PRK12414 352 AFYTDGTDTGLIRLSFSKDDATLVEGARRLCS 383 (384)
T ss_pred hhcCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 997432 2469999999888999999999874
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=384.34 Aligned_cols=370 Identities=24% Similarity=0.407 Sum_probs=307.1
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
++|+++++.+++++.++...+.+....+.++++|+.|+|+. +. ++.+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------------~~-----~~~~~~~~ 53 (393)
T PRK05764 3 KLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDF------------------------DT-----PEHIKEAA 53 (393)
T ss_pred chhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCC------------------------CC-----CHHHHHHH
Confidence 47999999999999999999888887788899999999985 33 67788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.+ ....|++..|...||+++++++.+.+|..+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 54 ~~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~y~~~~ 129 (393)
T PRK05764 54 IEALDD---GKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALL-DPGDEVIIPAPYWVSYP 129 (393)
T ss_pred HHHHhc---CCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhc-CCCCEEEecCCCCcchH
Confidence 877765 34569999999999999999999888888899999999999999999999997 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + +.++.+|+ +.+++.+++ ++++|++++||||||.++|.+++++|+++|++|++++|+
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~ 202 (393)
T PRK05764 130 EMVKLAGGVPVFVPTGEENGFKLTV-EQLEAAITP------KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLS 202 (393)
T ss_pred HHHHHcCCEEEEEecCcccCCcCCH-HHHHHhhCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence 56655 2 34678999 999998876 789999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|..+.| ++....++..+.. +..+++|+++||||.+ |++|+|+||++ +++++++.+..... ...++
T Consensus 203 De~y~~~~~-~~~~~~~~~~~~~------~~~~~~i~~~s~SK~~-~~~G~RiG~i~---~~~~~~~~~~~~~~~~~~~~ 271 (393)
T PRK05764 203 DEIYEKLVY-DGAEFTSIASLSP------ELRDRTITVNGFSKAY-AMTGWRLGYAA---GPKELIKAMSKLQSHSTSNP 271 (393)
T ss_pred eccccceee-CCCCcccHHHcCC------CCcCCEEEEecCcccc-cCccceeEEEe---cCHHHHHHHHHHHhhcccCC
Confidence 999999887 3333345444322 2234799999999999 99999999999 69999999988775 56788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..++.. . ..+.+++++.++++++.+.+.|++++|+.+..|+|++|+|+++..... .
T Consensus 272 ~~~~q~~~~~~l~~-------~---~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~~~~~------~ 335 (393)
T PRK05764 272 TSIAQYAAVAALNG-------P---QDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG------K 335 (393)
T ss_pred ChHHHHHHHHHHcC-------C---hHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceEEEEecccccc------c
Confidence 99999999988852 1 133456788899999999999999889999999999999976642110 0
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+ .++.++...+++++||.+.||..|+. .+++||+++.+++++++++++|+++++++
T Consensus 336 ~~-~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~vRis~~~~~~~~~~~i~~l~~~~~~~ 392 (393)
T PRK05764 336 SI-TDSLEFAEALLEEAGVAVVPGIAFGA---PGYVRLSYATSLEDLEEGLERIERFLESL 392 (393)
T ss_pred cc-CCHHHHHHHHHHhCCEEEccccccCC---CCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 00 02466677778889999999999975 35899999988899999999999988754
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-47 Score=381.52 Aligned_cols=365 Identities=21% Similarity=0.307 Sum_probs=294.7
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.|++++..++++.+..+...++ ...++++|+.|.|+. +. |+.+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~g~~~~------------------------~~-----~~~~~~a~ 49 (389)
T PRK05957 3 QFTSRMDAVQSPIIPVVGQLIR----ENPGTISLGQGVVSY------------------------PP-----PPEAIEAL 49 (389)
T ss_pred hhhHHHHhcCCcHHHHHHHHHH----hCCCeEEccCCCCCC------------------------CC-----CHHHHHHH
Confidence 3578887888877765443332 335689999999885 33 78888888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCC-CCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSD-PELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+.. .....|++..|.+++|+++++++.+++|+.++ +++|++|+|+++++..++.+++ ++||.|+++
T Consensus 50 ~~~~~~--~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~P~y~~~ 126 (389)
T PRK05957 50 NNFLAN--PENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAIT-DPGDEIILNTPYYFNH 126 (389)
T ss_pred HHHHhC--CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCCcCH
Confidence 877654 24468999999999999999999988898877 6799999999999999999997 899999996
Q ss_pred ------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|+++ .+.++++|+ +.+++.+++ ++|+|++++||||||.+++.+++++|+++|+++|++||+|
T Consensus 127 ~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~D 199 (389)
T PRK05957 127 EMAITMAGCQPILVPTDDNYQLQP-EAIEQAITP------KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISD 199 (389)
T ss_pred HHHHHhcCCEEEEeecCCCCCcCH-HHHHHhcCc------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEe
Confidence 56665 344678999 999999876 7999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|.++.|+ +.+..+...+. +...++|+++||||.| |++|+|+||++ .++++++++.+... ...+++
T Consensus 200 e~y~~~~~~-~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-g~~GlRiG~~~---~~~~~~~~~~~~~~~~~~~~~ 267 (389)
T PRK05957 200 EAYEYFTYD-GVKHFSPGSIP-------GSGNHTISLYSLSKAY-GFASWRIGYMV---IPIHLLEAIKKIQDTILICPP 267 (389)
T ss_pred ccchhccCC-CCCccChhhCC-------CccCcEEEEecchhhc-cCccceeEEEe---cCHHHHHHHHHHHhhcccCCC
Confidence 999999883 33333333221 3335899999999999 99999999999 58999999988775 456788
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccccCCceeEEeeeccCChhhHHHHhh
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV-VCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
.+.|.++..++.+.. .++++.++.++++++.+.+.|++++++ .+.+|+|++|+|+++. .+
T Consensus 268 ~~~q~~~~~~l~~~~----------~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~--~~------- 328 (389)
T PRK05957 268 VVSQYAALGALQVGK----------SYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVN--TD------- 328 (389)
T ss_pred cHHHHHHHHHHhCCh----------HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCC--CC-------
Confidence 899999988886321 122334566899999999999988774 7788999999996654 22
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.++.+++..+++++||.+.||+.|+.. +.+++||+++ .+.+++++++++|.+.++++.+
T Consensus 329 ---~~~~~~~~~l~~~~gv~v~pg~~f~~~-~~~~iRis~~~~~~~~l~~~~~~l~~~~~~~~~ 388 (389)
T PRK05957 329 ---LNDFELVKQLIREYRVAVIPGTTFGMK-NGCYLRIAYGALQKATAKEGIERLVQGLKTIVQ 388 (389)
T ss_pred ---CChHHHHHHHHHHCCEEEccchhhCCC-CCCEEEEEEecCCHHHHHHHHHHHHHHHHhhhc
Confidence 135677777777899999999999753 3569999998 7889999999999999887654
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-47 Score=380.77 Aligned_cols=364 Identities=19% Similarity=0.310 Sum_probs=293.9
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.|++++.....+.++++..... ...++|+|+.|.|+. +. |+.+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~ 52 (391)
T PRK07309 6 RFNKQLDKIEVSLIRQFDQSIS----DIPGILKLTLGEPDF------------------------TT-----PDHVKEAA 52 (391)
T ss_pred HHHhhhhhcCccHHHHHHHHHH----hcCCeEEcCCCCCCC------------------------CC-----CHHHHHHH
Confidence 4578888888887777665432 235699999999985 32 66777777
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+++.. ....|++..|.++||+++++++.+.+|+.+++ ++|++|+|+++++..++.+++ ++||.|+++
T Consensus 53 ~~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~vl~~~p~y~~~ 128 (391)
T PRK07309 53 KRAIDA---NQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAIL-EPGDKVLLPAPAYPGY 128 (391)
T ss_pred HHHHhc---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCCcch
Confidence 777664 33579999999999999999999889988775 699999999999999999997 899999997
Q ss_pred ------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 ------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 ------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + ..++.+|+ +.++++++.. ..++++|++++||||||.+++.+++++|+++|++|+++||+
T Consensus 129 ~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~~~~~---~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (391)
T PRK07309 129 EPIVNLVGAEIVEIDTTENDFVLTP-EMLEKAILEQ---GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVIS 204 (391)
T ss_pred HHHHHHcCCEEEEEecCCcCCcCCH-HHHHHHhhcc---CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEE
Confidence 56655 2 33577999 9999988642 11589999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|+++.| ++.+..++..+ .. +++|+++||||.| |+||+|+||++ +++++++.+.+... ...++
T Consensus 205 D~~y~~~~~-~~~~~~~~~~~--------~~-~~~i~~~S~SK~~-g~~GlRvG~~v---~~~~~~~~~~~~~~~~~~~~ 270 (391)
T PRK07309 205 DEVYSELTY-TGEPHVSIAEY--------LP-DQTILINGLSKSH-AMTGWRIGLIF---APAEFTAQLIKSHQYLVTAA 270 (391)
T ss_pred Eccccceee-CCCCCCCHHHh--------cc-CCEEEEecChhhc-cCccceeEEEE---eCHHHHHHHHHHHhhcccCC
Confidence 999999988 34444455443 22 3799999999999 99999999999 68999999987764 45678
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..++.+.. + +....++.|+++++.+.+.|++. |+.+..|+|++|+|+++ |.+.
T Consensus 271 ~~~~q~~~~~~l~~~~-----~-----~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~~~~~~l--~~~~------ 331 (391)
T PRK07309 271 TTMAQFAAVEALTNGK-----D-----DALPMKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYIFAKI--PAGY------ 331 (391)
T ss_pred ChHHHHHHHHHHhCCh-----h-----HHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEEC--CCCC------
Confidence 9999999999986421 1 12346778899999999999988 88889999999999654 3221
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
..++.+++..+++++||.+.||+.|+.. +.+++||+++.+.+++++++++|+++++++
T Consensus 332 --~~~~~~~~~~l~~~~gv~v~pg~~f~~~-~~~~iRi~~~~~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 332 --NQDSFKFLQDFARKKAVAFIPGAAFGPY-GEGYVRLSYAASMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred --CCCHHHHHHHHHHhCCEEEeCchhhCCC-CCCEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 0134566667788899999999999763 567999999977789999999999998765
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-47 Score=380.37 Aligned_cols=360 Identities=22% Similarity=0.340 Sum_probs=295.1
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
|++++...+.+.+.++...+. ..+++++|+.|.|+. |. ++.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~~~p~~------------------------~~-----~~~~~~a~~ 51 (387)
T PRK07683 5 INPRVKDIQISGIRQFSNMVQ----NYDNLISLTIGQPDF------------------------PT-----PSHVKEAAK 51 (387)
T ss_pred hhHHHHhCCccHHHHHHHHHH----hcCCeEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 478888888888877766542 335689999999885 33 677888888
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.. ....|++..|.++||+++++++++.+|+.++++ +|++|+|+++++..++.+++ ++||.|++|
T Consensus 52 ~~~~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~ 127 (387)
T PRK07683 52 RAITE---NYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTIL-EPGTEVILPAPIYPGYE 127 (387)
T ss_pred HHHhc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhC-CCCCEEEEcCCCccchH
Confidence 87765 457899999999999999999998889999998 99999999999999999997 899999997
Q ss_pred -----cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 -----FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 -----~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|.++ ..+++.+|. +.+++.+++ ++++|++++||||||.+++.+++++|+++|++++++||+|
T Consensus 128 ~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~~~~------~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D 200 (387)
T PRK07683 128 PIIRLCGAKPVFIDTRSTGFRLTA-EALENAITE------KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSD 200 (387)
T ss_pred HHHHHcCCEEEEeecCcccCCCCH-HHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEe
Confidence 55655 235677888 999998876 7899999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|+++.|+ + +..++..+. +..+++|+++||||.| |+||+|+||++ +++++++.+.+... ...+++
T Consensus 201 e~y~~~~~~-~-~~~~~~~~~-------~~~~~vi~~~s~SK~~-~~pGlRiG~i~---~~~~l~~~~~~~~~~~~~~~~ 267 (387)
T PRK07683 201 EIYSELVYE-Q-PHTSIAHFP-------EMREKTIVINGLSKSH-SMTGWRIGFLF---APSYLAKHILKVHQYNVTCAS 267 (387)
T ss_pred cccccceeC-C-CcCChhhcc-------CCcCCeEEEeeccccc-cCccceeEEEE---cCHHHHHHHHHHHHhccCCCC
Confidence 999998873 3 233444321 2234799999999999 99999999999 68999999987764 345678
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..++.+.. .+.++.++.++++++.+.+.|++. |+.+..|+|++|+|+.+... .
T Consensus 268 ~~~q~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~-~-------- 327 (387)
T PRK07683 268 SISQYAALEALTAGK----------DDAKMMRHQYKKRRDYVYNRLISM-GLDVEKPTGAFYLFPSIGHF-T-------- 327 (387)
T ss_pred hHHHHHHHHHHhCCh----------HHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCeeEEEEEecccC-C--------
Confidence 899999999986421 234457888999999999999987 88888999999999654310 1
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
.++.+++..+++++||.+.||+.|+. .+.+++||+++.+++++.+++++|++++.+.
T Consensus 328 --~~~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~~Ri~~~~~~~~~~~al~~l~~~l~~~ 384 (387)
T PRK07683 328 --MSSFDFALDLVEEAGLAVVPGSAFSE-YGEGYVRLSYAYSIETLKEGLDRLEAFLQQK 384 (387)
T ss_pred --CCHHHHHHHHHHhCCEEEcCchhhCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 13556777788999999999999975 3457999999987899999999999887643
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=382.92 Aligned_cols=357 Identities=18% Similarity=0.249 Sum_probs=290.7
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
++.++.+++.+.++.+...++ ..++|+|+.|.|+. +. ++.+.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~g~~~~------------------------~~-----~~~~~~~~~ 53 (386)
T PRK09082 8 PQSKLPNVGTTIFTVMSALAA-----EHGAINLSQGFPDF------------------------DG-----PPYLVEALA 53 (386)
T ss_pred hhhHhhccCccHHHHHHHHHh-----hCCEEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 455677777776665543332 34689999999985 33 677888877
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.. ....|++..|.++||+++++++.+.+|.+++++ +|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 ~~~~~---~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vli~~p~y~~~~ 129 (386)
T PRK09082 54 YAMAA---GHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALV-RPGDEVIVFDPSYDSYA 129 (386)
T ss_pred HHHHc---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCCchhhH
Confidence 77654 346899999999999999999998889888876 89999999999999999997 999999997
Q ss_pred -----cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 -----FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 -----~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|+++ ...++.+|+ +.+++.+++ ++++|++++||||||.+++.+++++|+++|++++++||+|
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~D 202 (386)
T PRK09082 130 PAIELAGGRAVRVALQPPDFRVDW-QRFAAAISP------RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSD 202 (386)
T ss_pred HHHHHcCCEEEEEecCcccccCCH-HHHHHhcCc------cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEe
Confidence 56665 234688999 999999876 7999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|.++.|+ +.+..++..+ + ....++|+++||||.| |++|+|+||++ +++++++.+.+... ..++++
T Consensus 203 e~y~~~~~~-~~~~~s~~~~-~------~~~~~~i~~~S~SK~~-~~~G~RiG~iv---~~~~l~~~~~~~~~~~~~~~~ 270 (386)
T PRK09082 203 EVYEHIVFD-GAGHASVLRH-P------ELRERAFVVSSFGKTY-HVTGWKVGYCV---APAALSAEFRKVHQYNTFTVN 270 (386)
T ss_pred hhhhhhccC-CCCCCChhhC-c------CccCcEEEEeechhhc-cchhhhhhhhh---CCHHHHHHHHHHHhhhcCCCC
Confidence 999999883 4444455443 1 1235899999999999 89999999999 69999999988875 567889
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..++.. ..++.+++++.|+++++++.+.|++. |+.+.+++|++|+|++++-..+
T Consensus 271 ~~~q~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~g~~~~~~~~~~~~~-------- 331 (386)
T PRK09082 271 TPAQLALADYLRA----------EPEHYLELPAFYQAKRDRFRAALANS-RFKLLPCEGTYFQLVDYSAISD-------- 331 (386)
T ss_pred hHHHHHHHHHHhC----------ChHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCeeEEEEEeccccCC--------
Confidence 9999999888752 12334457888999999999999986 8898899999999976641011
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCC-CCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQ-KEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~-~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.++.+++..+++++||.+.||+.|+. +.+.+++||+++.+++++++++++|++
T Consensus 332 --~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~~~~~~~l~~~~~rl~~ 385 (386)
T PRK09082 332 --LDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCFAKQEETLDAAAERLCQ 385 (386)
T ss_pred --CCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEecCCHHHHHHHHHHHhh
Confidence 13567777778899999999999864 334579999999888999999999875
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-47 Score=386.48 Aligned_cols=331 Identities=20% Similarity=0.317 Sum_probs=261.2
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCC--CCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------c
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGY--PSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------F 162 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~--~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~ 162 (463)
....|+++.|.++||++||+|+++++|. ++++++|++|+|+++++..++.+++ +|||.|++| .
T Consensus 78 ~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~-~pGd~Vlv~~P~Y~~~~~~~~~~~ 156 (468)
T PLN02450 78 ELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLA-EPGDAFLLPTPYYPGFDRDLKWRT 156 (468)
T ss_pred hhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhC-CCCCEEEECCCCCCchHHHHhhcC
Confidence 3456999999999999999999887774 4789999999999999999999998 999999997 3
Q ss_pred Ccee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 163 HTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 163 g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
|+++ + ++++.+|+ +.+++++++..+.+.++|+|++||||||||.++|.+++++|+++|++++++||+||+|++
T Consensus 157 g~~~v~v~~~~~~~~~~~~-~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~ 235 (468)
T PLN02450 157 GVEIVPIHCSSSNGFQITE-SALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSG 235 (468)
T ss_pred CcEEEEEecCCccCCcCCH-HHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccc
Confidence 5554 2 46788999 999999876544445799999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchHHHHHhcCC-CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHH
Q 041151 237 NIYQDERPFVSSKKVLMDMGL-PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQI 315 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~ 315 (463)
+.|+ +.++.++..+....+. +.+...++++++||||.| |+||+|+||++. .++.+++.+.+... ...++.+.|.
T Consensus 236 ~~f~-~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~li~--~~~~l~~~~~~~~~-~~~~s~~~Q~ 310 (468)
T PLN02450 236 TVFD-SPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDL-GLPGFRVGAIYS--NDEMVVSAATKMSS-FGLVSSQTQY 310 (468)
T ss_pred cccC-CCCcccHHHHhhhcccccCCCCCcEEEEEeccccC-CCCCccEEEEEE--CCHHHHHHHHHHhh-cCCCCHHHHH
Confidence 8883 3344455444221000 002345899999999999 999999999994 23456676666644 3457899999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
++..+|++. .+.. .++++.++.|+++++.+.+.|+++ |+.+.+|+||+|+|++++ ... + ...+.+.
T Consensus 311 a~~~~L~~~-----~~~~--~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~~~~g~flwi~l~--~~~-~---~~~~~~~ 376 (468)
T PLN02450 311 LLSALLSDK-----KFTK--NYLEENQKRLKQRQKKLVSGLEAA-GIKCLKSNAGLFCWVDMR--HLL-K---SNTFEAE 376 (468)
T ss_pred HHHHHhCCc-----hhHH--HHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCceEEEEEEch--Hhc-C---cCCchHH
Confidence 999999742 2221 134457888999999999999998 898889999999997764 210 0 0001123
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+++..+++++||.+.||+.|+.. +.+|+||+++ .+++++++++++|++++++..
T Consensus 377 ~~l~~~ll~~~gV~v~PG~~f~~~-~~g~~Rl~f~~~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 377 MELWKKIVYEVKLNISPGSSCHCT-EPGWFRVCFANMSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred HHHHHHHHHhCCEEEeCccccCCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHhcc
Confidence 456777788899999999999863 4569999999 588999999999999987654
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=378.05 Aligned_cols=362 Identities=19% Similarity=0.246 Sum_probs=296.3
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..+.++.++++...+.+.++.+++.++|+.|+|+. +. ++.+.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~~ 52 (386)
T PRK07550 2 LNPLIAALFPPPIPEVRAWLAGYDGADGPLIDLSQAVPGY------------------------PP-----PPELLRALA 52 (386)
T ss_pred cchhhhhcCChHHHHHHHHHHHHhhcCCCeEEeCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 5677888888899999999888888888999999999885 32 667777777
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. .....|++..|.++||+++++++.+.+|..+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 53 ~~~~~--~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~ 129 (386)
T PRK07550 53 EAAAD--PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLA-GAGDEVILPLPWYFNHKM 129 (386)
T ss_pred HHHhC--cCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhc-CCCCEEEEcCCCCcchHH
Confidence 76643 245789999999999999999999999999999999999999999999999997 899999997
Q ss_pred ----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|+++ + +.++.+|. +.+++.+++ ++++|++++||||||.++|.+++++|+++|++++++||+|
T Consensus 130 ~~~~~g~~~~~v~~~~~~~~~~~~-~~l~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~D 202 (386)
T PRK07550 130 WLDMLGIRPVYLPCDEGPGLLPDP-AAAEALITP------RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILD 202 (386)
T ss_pred HHHhcCCEEEEEecCCCcCCCCCH-HHHHHHhcc------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEe
Confidence 56665 2 34677899 999999987 7999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|+++.+. .....++... . +...++|+++||||++ |++|+|+||++ +++++++.+.+... ...+++
T Consensus 203 d~y~~~~~~-~~~~~~~~~~-~------~~~~~~i~~~S~SK~~-g~~G~RiG~i~---~~~~~~~~~~~~~~~~~~~~s 270 (386)
T PRK07550 203 ETYRDFDSG-GGAPHDLFAD-P------DWDDTLVHLYSFSKSY-ALTGHRVGAVV---ASPARIAEIEKFMDTVAICAP 270 (386)
T ss_pred ccchhhccC-CCCCcchhhC-C------CccccEEEEecchhhc-cCcccceEeee---cCHHHHHHHHHHHhhcccCCC
Confidence 999988662 2222233221 0 1234799999999999 89999999999 58889998888775 567789
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..++.+ + .++.++.++.++++++.+.+.|..++++.+ .+.|++|+|++++.. +
T Consensus 271 ~~~q~~~~~~l~~-------~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~g~~~~~~~~~~~-~-------- 330 (386)
T PRK07550 271 RIGQIAVAWGLPN-------L---ADWRAGNRAEIARRRDAFRAVFARLPGWEL-LASGAYFAYVRHPFP-D-------- 330 (386)
T ss_pred cHHHHHHHHHhcc-------H---HHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CCCceEEEEecCCCC-C--------
Confidence 9999999998852 2 334455778899999999999988756654 467899999654310 1
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKF 446 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~ 446 (463)
.++.+++..+++++||.|.||..|+. .+.+++||+++ .+++++++++++|+++
T Consensus 331 --~~~~~l~~~l~~~~gv~v~pg~~f~~-~~~~~iRis~~~~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 331 --RPSREVARRLAKEAGILCLPGTMFGP-GQEGYLRLAFANADVAGIGELVERLRAF 384 (386)
T ss_pred --CCHHHHHHHHHHhcCEEEeCchhhCC-CCCCEEEEEeecCCHHHHHHHHHHHHhh
Confidence 13567777777889999999999975 34569999999 6789999999999876
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=378.25 Aligned_cols=366 Identities=21% Similarity=0.344 Sum_probs=289.6
Q ss_pred hhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhh
Q 041151 15 VKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLS 94 (463)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~ 94 (463)
+.+.+++.+......+.+.++.++++++|+.|+|+. +. |+.+++++.+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~------------------------~~-----~~~~~~~~~~~~~ 56 (395)
T PRK08175 6 IDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDG------------------------PT-----PPHIVEKLCEVAQ 56 (395)
T ss_pred hhcCCchHHHHHHHHHHHHHhcCCCeEEcCCCCCCC------------------------CC-----CHHHHHHHHHHHh
Confidence 344455544334444455666788899999999995 32 6678888777664
Q ss_pred hcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------
Q 041151 95 LTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------ 161 (463)
Q Consensus 95 ~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------ 161 (463)
. .....|+++.|.++||+++++|+.+++|+.++++ +|++|+|+++++..++..++ +|||+|+++
T Consensus 57 ~--~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~ 133 (395)
T PRK08175 57 R--PDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATL-DHGDTVLVPNPSYPIHIYGAV 133 (395)
T ss_pred C--CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHH
Confidence 4 2457899999999999999999998889999887 89999999999999999997 999999997
Q ss_pred -cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 162 -FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 162 -~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.|+++ +.+..+.+. +.++++++.. .+++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++
T Consensus 134 ~~g~~~~~v~~~~~~~~~-~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l 209 (395)
T PRK08175 134 IAGAQVRSVPLVEGVDFF-NELERAIRES---YPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADI 209 (395)
T ss_pred HcCCeEEEEecccCCCcH-HHHHHHHhhc---cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhh
Confidence 45554 333333456 8888887641 126899999999999999999999999999999999999999999998
Q ss_pred ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIF 316 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~ 316 (463)
.| ++....++..+ + ...+++|+++||||.| |+||+|+||++ +++++++.+.+... ..++++.+.|.+
T Consensus 210 ~~-~~~~~~~~~~~-~------~~~~~~i~~~S~SK~~-g~pGlRiG~~~---~~~~l~~~~~~~~~~~~~~~~~~~q~~ 277 (395)
T PRK08175 210 VY-DGWKAPSIMQV-P------GAKDVAVEFFTLSKSY-NMAGWRIGFMV---GNPELVSALARIKSYHDYGTFTPLQVA 277 (395)
T ss_pred cc-CCCCCcchhcC-C------CcccCEEEEeeccccc-cCcchhheeee---CCHHHHHHHHHHHhhcccCCCcHHHHH
Confidence 88 44444454432 1 1124689999999999 89999999999 69999999988876 467778889998
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChH
Q 041151 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (463)
+..++.. ..++.+.+++.|+++++++.+.|+.. |+.+..|+|++|+|++++.... ..++.
T Consensus 278 ~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~~---------~~~~~ 337 (395)
T PRK08175 278 AIAALEG----------DQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYA---------AMGSL 337 (395)
T ss_pred HHHHHhC----------cHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCcccC---------CCCHH
Confidence 8888752 12345567889999999999999998 8888889999999976642110 01256
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 397 FYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 397 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+++..+++++||.|.||..|+. .+.+++||+++.+.+.+++++++|++++++
T Consensus 338 ~~~~~l~~~~gv~v~p~~~f~~-~~~~~lRis~~~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 338 EFAKKLLNEAKVCVSPGIGFGD-YGDTHVRFALIENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred HHHHHHHHhCCEEEeCchhhCc-CCCCeEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 6767778889999999999975 355689999997789999999999988863
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=378.95 Aligned_cols=366 Identities=20% Similarity=0.300 Sum_probs=291.7
Q ss_pred chhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCC
Q 041151 20 YAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGG 99 (463)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~ 99 (463)
-.+|+++...+.+....|.++++|+.|+|.. .|. .+. ++.+.+++.+.+... .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~-----------------~~~---~~~-----~~~~~~~~~~~l~~~--~ 65 (403)
T TIGR01265 13 VNPIRAIVDNLKVKPNPEKPIIPLSHGDPSV-----------------FGN---LRT-----DPEAEEAVKDALRSG--K 65 (403)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCCCCCCc-----------------cCC---CCC-----CHHHHHHHHHHHhcC--C
Confidence 4568888888888877789999999999962 001 122 778888888777652 3
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW 166 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~ 166 (463)
...|++..|.+++|++++++++.++++.+++++|++|+|+++++..++.++. ++||+|+++ .|.++
T Consensus 66 ~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 144 (403)
T TIGR01265 66 FNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALA-NPGANILVPRPGFPLYDTRAAFSGLEV 144 (403)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence 4589889999999999999999888888899999999999999999999997 899999997 46555
Q ss_pred ------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 167 ------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 167 ------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
+..++++|+ +.+++.+.+ +++++++++||||||.+++.+++++|+++|+++|++||+||+|.++.|+
T Consensus 145 ~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~ 217 (403)
T TIGR01265 145 RLYDLLPEKDWEIDL-DGLEALADE------KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFG 217 (403)
T ss_pred EEecCCcccCCccCH-HHHHHHhCc------CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccC
Confidence 234678999 999998876 7899999999999999999999999999999999999999999999883
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh-----HHHHHHhhhhhcccCChHHHH
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK-----TVDEIYKIASIALSPNVPAQI 315 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~q~ 315 (463)
+.+..++..+ +...++|+++||||+| ++||+|+||+++++ +++ +++.+.+......+++.+.|.
T Consensus 218 -~~~~~~~~~~--------~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 286 (403)
T TIGR01265 218 -DAPFIPMASF--------ASIVPVLSLGGISKRW-VVPGWRLGWIIIHD-PHGIFRDTVLQGLKNLLQRILGPATIVQG 286 (403)
T ss_pred -CCCccchhhh--------ccCCcEEEEeeccccc-CCCcceEEEEEEeC-chhhhHHHHHHHHHHHhhhhcCCChHHHH
Confidence 4444555554 4444799999999998 89999999999521 212 444454444335678999999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
++..++.+. ...+.++.++.++++++.+.+.|+.++|+.+..|+|++|+|++++... . .+..++
T Consensus 287 ~~~~~l~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~--~-----~~~~~~ 350 (403)
T TIGR01265 287 ALPDILENT---------PQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELEL--F-----PEIKDD 350 (403)
T ss_pred HHHHHHHhC---------hHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccc--c-----CCCCCH
Confidence 999988521 123455678889999999999999888888888999999997654210 0 001135
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++..+++++||.+.||+.|+. .+++||+++.+++++++++++|+++++++
T Consensus 351 ~~~~~~l~~~~gv~v~pg~~f~~---~~~iRis~~~~~~~l~~~l~~l~~~~~~~ 402 (403)
T TIGR01265 351 VDFCEKLVREESVICLPGSAFGL---PNWVRITITVPESMLEEACSRIKEFCERH 402 (403)
T ss_pred HHHHHHHHHhCCEEEeCccccCC---CCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 67777778899999999999974 35899999977889999999999888654
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=381.79 Aligned_cols=339 Identities=20% Similarity=0.244 Sum_probs=282.0
Q ss_pred hhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCcc
Q 041151 24 GELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAY 103 (463)
Q Consensus 24 ~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y 103 (463)
......++++.-.+.++++|++|+|+. +. |+.+ +++.+++.. ....|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~e~~~------------------------~~-----~~~~-~~~~~~~~~---~~~~Y 58 (373)
T PRK07324 12 LNVYEKSATYDIAESCIDSLTLEELLA------------------------LA-----GKNP-EAFYQELGQ---KKLTY 58 (373)
T ss_pred HHHhhccCccccccCCCCCCcHHHHHh------------------------cc-----Ccch-HHHHHHHhc---CCccC
Confidence 344455555666788899999999986 33 5566 777777765 44689
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----
Q 041151 104 SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---- 166 (463)
Q Consensus 104 ~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---- 166 (463)
++..|.++||++||+++.. +++++|++|+|+++++..++.+++ ++||+|+++ .|+++
T Consensus 59 ~~~~G~~~lr~~ia~~~~~-----~~~~~vi~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~ 132 (373)
T PRK07324 59 GWIEGSPEFKEAVASLYQN-----VKPENILQTNGATGANFLVLYALV-EPGDHVISVYPTYQQLYDIPESLGAEVDYWQ 132 (373)
T ss_pred CCCCCCHHHHHHHHHHhcC-----CChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEe
Confidence 9999999999999999852 678999999999999999999998 999999996 56665
Q ss_pred --cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCC
Q 041151 167 --KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 --~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~ 244 (463)
.+.++.+|+ +.+++.+++ ++|+|++++||||||.+++.+++++|+++|+++|++||+||+|..+.++ + .
T Consensus 133 ~~~~~~~~~d~-~~l~~~~~~------~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~-~-~ 203 (373)
T PRK07324 133 LKEENGWLPDL-DELRRLVRP------NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDED-G-S 203 (373)
T ss_pred cccccCCCCCH-HHHHHhCCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccC-C-C
Confidence 234577899 999988876 7999999999999999999999999999999999999999999998773 2 2
Q ss_pred ccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCC
Q 041151 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNP 323 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~ 323 (463)
..++... . +++|+++||||+| |++|+|+||++ +++++++.+.+.+. ..++++.+.|.++..+++.
T Consensus 204 ~~s~~~~--------~--~~~I~~~s~SK~~-~~~G~RiG~i~---~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~ 269 (373)
T PRK07324 204 TPSIADL--------Y--EKGISTNSMSKTY-SLPGIRVGWIA---ANEEVIDILRKYRDYTMICAGVFDDMLASLALEH 269 (373)
T ss_pred CCChhhc--------c--CCEEEEecchhhc-CCccceeEEEe---cCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcC
Confidence 3444332 2 3689999999999 99999999999 58999999999886 4677889999999888752
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHH
Q 041151 324 LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLL 403 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 403 (463)
....+++.++.++++++.+.+.|++.+++.+..|+|++|+|++++.+. ++.+++.+++
T Consensus 270 ----------~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~~------------~~~~~~~~ll 327 (373)
T PRK07324 270 ----------RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVDM------------PSEDFCLKLL 327 (373)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCCC------------CHHHHHHHHH
Confidence 223455678889999999999998887888899999999897776432 3677888888
Q ss_pred HhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 404 EATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 404 ~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+++||.+.||+.|+.+ +++|||++.+++.+++++++|++++++
T Consensus 328 ~~~gv~v~pg~~F~~~---~~iRis~~~~~~~l~~~l~rl~~~l~~ 370 (373)
T PRK07324 328 KETGVLLVPGNRFDLE---GHVRIGYCCDTETLKKGLKKLSEFLRE 370 (373)
T ss_pred HhcCEEEECccccCCC---CeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999752 489999998789999999999998865
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=377.82 Aligned_cols=366 Identities=23% Similarity=0.403 Sum_probs=294.1
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++....++.++.+.+...+....+.++++|+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~~~~a~~ 53 (397)
T PRK07568 3 ISKRVLNMPASPIRKLVPYADEAKKRGIKVYHLNIGQPDI------------------------KT-----PEVFFEAIK 53 (397)
T ss_pred hhhHhhhCCcchHHHHHHHHHHHHhhCCCEEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 5777877888888888877666665677899999999985 33 777777776
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+... ....|++..|.+++|+++++++. .+|+.+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 ~~~~----~~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~ 127 (397)
T PRK07568 54 NYDE----EVLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEILITNGGSEAILFAMMAIC-DPGDEILVPEPFYANYNG 127 (397)
T ss_pred HHhc----CCcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEEEcCChHHHHHHHHHHhc-CCCCEEEEecCCCccHHH
Confidence 5533 34689999999999999999997 57888999999999999999999999997 899999996
Q ss_pred ----cCcee---c---CCCccc-ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 ----FHTTW---K---RQQIGV-LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 ----~g~~~---~---~~~~~~-d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + +.++.. ++ +.|++.+++ ++++|++++||||||.+++.+++++|+++|++++++||+
T Consensus 128 ~~~~~g~~~~~v~~~~~~g~~~~~~-~~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 128 FATSAGVKIVPVTTKIEEGFHLPSK-EEIEKLITP------KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred HHHHcCCEEEEeecCcccCCCCCCH-HHHHHhcCc------cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 45555 2 234443 57 899988876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPN 310 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~ 310 (463)
||+|.++.|+ +.+..++..+. ...+++|+++||||.| |++|+|+||++. .++++++.+.+.....++++
T Consensus 201 De~y~~~~~~-~~~~~s~~~~~-------~~~~~~i~~~S~SK~~-~~~G~R~G~~~~--~~~~~~~~~~~~~~~~~~~s 269 (397)
T PRK07568 201 DEVYREFVYD-GLKYTSALSLE-------GLEDRVIIIDSVSKRY-SACGARIGCLIS--KNKELIAAAMKLCQARLSPP 269 (397)
T ss_pred eccchhcccC-CCCccChhhcC-------CCcCCEEEEecchhhc-cCCCcceEEEec--CCHHHHHHHHHHhhccCCCC
Confidence 9999998883 33444554431 1135799999999999 899999999994 35788888876654357889
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..++++. ..+.+++++.|+++++.+.+.|++++|+.+..|+|++|+|+++. ..
T Consensus 270 ~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~~~~~l~--~~-------- 329 (397)
T PRK07568 270 TLEQIGAAALLDTP----------ESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLP--VD-------- 329 (397)
T ss_pred cHHHHHHHHHhhCC----------HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceEEEEecC--CC--------
Confidence 99999999998631 13345578889999999999999887888888999999996553 21
Q ss_pred CCCChHHHHHHHHHh-----cCeEeeCCCCCCCCC--CCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEA-----TGISTVPGSGFGQKE--GIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~-----~gI~v~pg~~f~~~~--~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
++.++...++++ +||.+.||..|+..+ +.+++||+++.+++++++++++|+++++++.+
T Consensus 330 ---~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~~~~~~iRls~~~~~~~~~~~~~~l~~~l~~~~~ 395 (397)
T PRK07568 330 ---DAEDFAKWLLTDFNYNGETVMVAPASGFYATPGLGKNEIRIAYVLNEEDLKRAMEILKEALEKYNK 395 (397)
T ss_pred ---CHHHHHHHHHhhcccccceEEEeCchHhcCCCCCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence 245666666654 699999999996422 34699999997679999999999999877553
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=374.28 Aligned_cols=348 Identities=17% Similarity=0.227 Sum_probs=272.8
Q ss_pred ccchhhhhHHHHHHHHHHh-cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhc
Q 041151 18 VQYAVRGELYLRASELQKE-GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLT 96 (463)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~ 96 (463)
++++++..+...+.++... |.++++|+.|+|+. +. |+.+.+++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~------------------------~~-----~~~~~~a~~~~~~-- 51 (374)
T PRK05839 3 FEPYPFEKLRELLKEITPNKEYKGLDLTIGEPQF------------------------ET-----PKFIQDALKNNAH-- 51 (374)
T ss_pred CCcchHHHHHHHHHHhhhcCCCCeEEcCCCCCCC------------------------CC-----CHHHHHHHHHHhh--
Confidence 4566777777777778877 67999999999985 43 6667777665443
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEEc-------------c
Q 041151 97 SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVLL-------------F 162 (463)
Q Consensus 97 ~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlvp-------------~ 162 (463)
....|+++.|.++||+++|+|+++++|+++++++|++|+|+++++..++.+++. ++||.|++| .
T Consensus 52 --~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~ 129 (374)
T PRK05839 52 --LLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIAS 129 (374)
T ss_pred --ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhc
Confidence 357899999999999999999999999999999999999999999999888741 478999996 5
Q ss_pred Ccee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 163 HTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 163 g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
|+++ ..+++.+|. +..+ + + ++|+|+++|||||||.++|.+++++|+++|+++|++||+||+|.+
T Consensus 130 g~~v~~v~~~~~~~~~~d~-~~~~--~-~------~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~ 199 (374)
T PRK05839 130 RAKVLLMPLTKENDFTPSL-NEKE--L-Q------EVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSE 199 (374)
T ss_pred CCEEEEeecccccCCcCCc-chhh--h-c------cccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhh
Confidence 6666 234566666 4432 2 2 689999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHH
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQI 315 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~ 315 (463)
+.+ + .+..++.......+. ...+++|+++||||+| ++||+|+||++ +++++++++.+... ...+++.+.|.
T Consensus 200 ~~~-~-~~~~s~~~~~~~~~~--~~~~~vi~~~SfSK~~-~~~GlRiG~ii---~~~~~~~~~~~~~~~~~~~~~~~~q~ 271 (374)
T PRK05839 200 IYE-N-TPPPSLLEASILVGN--ESFKNVLVINSISKRS-SAPGLRSGFIA---GDASILKKYKAYRTYLGCASPLPLQK 271 (374)
T ss_pred ccc-C-CCCCCHhhhhcccCc--cccCcEEEEecccccc-CCccceeEEEe---cCHHHHHHHHHHHhhcCCCCChHHHH
Confidence 755 2 233344332110000 1235899999999999 89999999999 68999999988765 45678899999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
++..++.. ..+.+++++.++++++.+.+.| |+. .|+|++|+|++++ ++
T Consensus 272 ~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~l----~~~--~p~gg~fi~~~~~---------------~~ 319 (374)
T PRK05839 272 AAAVAWLD-----------DEHAEFFRNIYAKNLKLAREIL----GIT--IPPATFYVWLPVD---------------ND 319 (374)
T ss_pred HHHHHhcc-----------chHHHHHHHHHHHHHHHHHHhc----CCC--CCCeeEEEEEeCC---------------Ch
Confidence 98877642 2234457888999998888766 333 6889999996653 14
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.+++..+++++||.|.||+.|+.. .+.+|+|||++.+++++++++++|+++++
T Consensus 320 ~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 320 EEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVYDTPKLEKALEIIKTYLE 373 (374)
T ss_pred HHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecCCHHHHHHHHHHHHHHhh
Confidence 566777777799999999988753 23579999999778999999999998875
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=376.97 Aligned_cols=356 Identities=17% Similarity=0.219 Sum_probs=283.0
Q ss_pred chhhhhHHHHHHHHHH--hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcC
Q 041151 20 YAVRGELYLRASELQK--EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTS 97 (463)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~ 97 (463)
.+++-.+..+.+.++. .++++++|+.|+|+. +. ++.+++++.+.+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~------------------------~~-----~~~~~~~l~~~~~~-- 72 (410)
T PRK06290 24 IYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDE------------------------MA-----DESVVEVLCEEAKK-- 72 (410)
T ss_pred hhHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCC------------------------CC-----CHHHHHHHHHHHhC--
Confidence 3344455555555553 366799999999985 33 67788888776643
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------c
Q 041151 98 GGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------F 162 (463)
Q Consensus 98 ~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~ 162 (463)
.....|++ .|.++||+++|+|+.+++|+. ++++ +|++|+|++++|..++.+++ ++||.|++| .
T Consensus 73 ~~~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~ 150 (410)
T PRK06290 73 PENRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGYPVTGTHTKYY 150 (410)
T ss_pred CCCCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhC-CCCCEEEEeCCCCccHHHHHHHc
Confidence 13457875 899999999999999888998 9987 89999999999999999998 999999997 5
Q ss_pred Ccee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 163 HTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 163 g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
|.++ .+.++.+|+ +.+++.+.+ ++|+|+++|||||||.++|.+++++|+++|++|+++||+||+|.+
T Consensus 151 g~~v~~v~~~~~~~~~~d~-~~l~~~~~~------~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~ 223 (410)
T PRK06290 151 GGEVYNLPLLEENNFLPDL-DSIPKDIKE------KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAA 223 (410)
T ss_pred CCEEEEEecCCCcCCcCCH-HHHHHhhcc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhh
Confidence 6665 234577899 999998876 799999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHH
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQI 315 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~ 315 (463)
+.|+ + .+.++..+. +..+++|+++||||.| |+||+|+||++ +++++++.+.+... ...+++.+.|.
T Consensus 224 ~~~~-~-~~~s~~~~~-------~~~~~~I~i~SfSK~~-g~~GlRiG~ii---~~~~l~~~l~~~~~~~~~~~~~~~q~ 290 (410)
T PRK06290 224 LTFD-G-KPLSFLSVP-------GAKEVGVEIHSLSKAY-NMTGWRLAFVV---GNELIVKAFATVKDNNDSGQFIAIQK 290 (410)
T ss_pred ceeC-C-CCcChhcCC-------CccccEEEEeechhhc-CCchhheEeEE---eCHHHHHHHHHHHhccccCCcHHHHH
Confidence 8873 3 233444331 2234689999999999 89999999999 69999999988775 45667789999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
++..++.+. .+.++.++.|+++++.+.+.|++. |+.+.+|+|+||+|++++ ..... ..+..++
T Consensus 291 aa~~~l~~~-----------~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~f~l~v~lp--~~~~~---~~~~~~~ 353 (410)
T PRK06290 291 AGIYALDHP-----------EITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFYLYVKAP--KGTKS---GIKFENA 353 (410)
T ss_pred HHHHHhhCc-----------HHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCeeeEEEEECC--Ccccc---CCCCCCH
Confidence 999988631 234567888999999999999998 888888999999996553 21100 0001245
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++..++++.+|.+.||+.|+ +++||+++ .++++.+++++.|++.+.++
T Consensus 354 ~~~~~~Ll~~~~v~~~p~~~~~-----~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 354 EEFSQYLIKEKLISTVPWDDAG-----HFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred HHHHHHHHHhCCEEEECCcccc-----CeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 6777777777788888988765 38999999 68899999999999888664
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-46 Score=378.50 Aligned_cols=332 Identities=21% Similarity=0.324 Sum_probs=266.4
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcC--CCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------c
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------F 162 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~ 162 (463)
....|.+..|.+.||+++|+|+++.+| .++++++|++|+|+++++..++.+++ +|||.|++| .
T Consensus 87 ~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~-~pGD~Vlv~~P~Y~~f~~~~~~~~ 165 (447)
T PLN02607 87 ENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRWRT 165 (447)
T ss_pred hhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHhcC
Confidence 345688899999999999999998776 46899999999999999999999997 999999997 3
Q ss_pred Ccee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 163 HTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 163 g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
|+++ ..++|.+|+ +.+++++++..+.+.++|+|+++|||||||.++|++++++|+++|++++++||+||+|+.
T Consensus 166 g~~vv~v~~~~~~~f~~~~-~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~ 244 (447)
T PLN02607 166 GVKIVPIHCDSSNNFQVTP-QALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSG 244 (447)
T ss_pred CcEEEEEeCCCCCCCcCCH-HHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccc
Confidence 4444 235678999 999999987666667899999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHH
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIF 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~ 316 (463)
+.| ++.++.++..+..+++.+ +...++++++||||.| |++|+|+||++. .+++++..+.+... ...++.+.|.+
T Consensus 245 ~~f-~~~~f~S~~s~~~~~~~~-~~~~~v~vi~s~SK~f-g~~GlRvG~ivs--~n~~l~~~~~~~~~-~~~~s~~~q~~ 318 (447)
T PLN02607 245 SVF-SASEFVSVAEIVEARGYK-GVAERVHIVYSLSKDL-GLPGFRVGTIYS--YNDKVVTTARRMSS-FTLVSSQTQHL 318 (447)
T ss_pred ccc-CCCCcccHHHHHhhcCCC-CCcCcEEEEEcchhcC-CCCcceEEEEEE--cCHHHHHHHHHHhh-cCCCCHHHHHH
Confidence 888 445566777664443100 1135899999999999 999999999995 36777777766644 34578899999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChH
Q 041151 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (463)
+..+|.+.. ..+ ++.+..+++|+++++.+.+.|++. |+.+..++||+|+|++++ .. +. ......+.
T Consensus 319 ~~~~L~d~~----~~~---~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~ag~fvw~~L~--~~-~~---~~~~~~e~ 384 (447)
T PLN02607 319 LASMLSDEE----FTE---NYIRTNRERLRKRYEMIVQGLRRA-GIECLKGNAGLFCWMNLS--PL-LE---TPTREGEL 384 (447)
T ss_pred HHHHhCCch----hHH---HHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCCeeEEEEEEch--Hh-hc---CCCchhHH
Confidence 999997532 122 334567889999999999999997 888889999999997764 11 00 00011134
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 397 FYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 397 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+++..+++++||.+.||+.|+.. ..+|+||+|+ .++++++++++||++++++.+.+
T Consensus 385 ~l~~~ll~~~gV~v~pG~~f~~~-~~g~fRi~fa~~~~~~l~~gl~Ri~~~l~~~~~~ 441 (447)
T PLN02607 385 ALWDSILREVKLNISPGSSCHCS-EPGWFRVCFANMSEDTLEVALKRIHRFMDRRKTA 441 (447)
T ss_pred HHHHHHHHhCCEEEcCccccCCC-CCCEEEEEeccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 55667778889999999999863 4579999999 58999999999999999876543
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=375.27 Aligned_cols=357 Identities=18% Similarity=0.307 Sum_probs=288.1
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHY 92 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~ 92 (463)
.++..++.+.+..+...+.+ .+++||+.|.|+. +. |+.+++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-----~~~i~l~~g~p~~------------------------~~-----~~~~~~~~~~~ 49 (387)
T PRK07777 4 SRLRPFGTTIFAEMSALAVR-----TGAVNLGQGFPDE------------------------DG-----PPEMLEAAQEA 49 (387)
T ss_pred hhhhhcCccHHHHHHHHHhh-----CCeEEccCCCCCC------------------------CC-----CHHHHHHHHHH
Confidence 45667788877777665532 3689999999995 33 66677777776
Q ss_pred hhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----------
Q 041151 93 LSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------- 161 (463)
Q Consensus 93 ~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------- 161 (463)
+.. ....|++..|.++||+++++++.+.+|++++++ +|++|+|+++++..++.+++ ++||+|+++
T Consensus 50 ~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~vli~~p~y~~~~~~ 125 (387)
T PRK07777 50 IAG---GVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGLV-EPGDEVLLIEPYYDSYAAV 125 (387)
T ss_pred Hhc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHH
Confidence 654 346899999999999999999988899988887 79999999999999999997 899999986
Q ss_pred ---cCcee------cC-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ---FHTTW------KR-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ---~g~~~------~~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|.++ .. .++.+|+ ++|++.+.+ ++++|++++||||||.+++.+++++|+++|++++++||+|
T Consensus 126 ~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~D 198 (387)
T PRK07777 126 IAMAGAHRVPVPLVPDGRGFALDL-DALRAAVTP------RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITD 198 (387)
T ss_pred HHHCCCEEEEeecCCccCCCcCCH-HHHHHhcCc------ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEe
Confidence 45554 12 3567999 999998876 7899999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|.++.| ++..+.++..+ + +..+++|+++||||+| |+||+|+||++ +++++++.+.+... ..++++
T Consensus 199 e~y~~~~~-~~~~~~~~~~~-~------~~~~~~i~~~S~SK~~-g~~GlRiG~~~---~~~~l~~~~~~~~~~~~~~~~ 266 (387)
T PRK07777 199 EVYEHLVF-DGARHLPLATL-P------GMRERTVTISSAAKTF-NVTGWKIGWAC---GPAPLIAAVRAAKQYLTYVGG 266 (387)
T ss_pred ccchhccc-CCCCcccHhhC-C------CCcCcEEEEeechhhc-cCcCceeEEEe---cCHHHHHHHHHHHhhcccCCC
Confidence 99999888 33333444432 1 1134789999999999 89999999999 68999999887765 456778
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..++... ..+.+++++.++++++.+.+.|++. |+.+.+|+|+||+|++++...
T Consensus 267 ~~~q~~~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~g~~~~~~~~~~~~--------- 326 (387)
T PRK07777 267 APFQPAVAHALDHE----------DAWVAALRDSLQAKRDRLAAGLAEA-GFEVHDSAGTYFLCADPRPLG--------- 326 (387)
T ss_pred CHHHHHHHHHHhCC----------cHHHHHHHHHHHHHHHHHHHHHHhC-CCCccCCCcceEEEecccccC---------
Confidence 88998888887532 2334567889999999999999997 888889999999997654111
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCC--CCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQK--EGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~--~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
..++.+++..+++++||.|.||..|+.. .+.+++||+++.+++++++++++|+++.
T Consensus 327 -~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 327 -YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNHLVRFAFCKRDDTLDEAIRRLRALR 384 (387)
T ss_pred -CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 1235677777778899999999999742 2356899999988899999999998765
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=378.84 Aligned_cols=357 Identities=20% Similarity=0.271 Sum_probs=274.8
Q ss_pred hhhhhhhccc-hhhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 11 MNENVKKVQY-AVRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
+++...++.. +.+..+...+++.... ++++++|+.|+|+. +. |+.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~~~~ 54 (409)
T PRK07590 4 INENYLKLKAGYLFPEIARRVNAFREANPEAKIIRLGIGDVTQ------------------------PL-----PPAVIE 54 (409)
T ss_pred cccccCccCCcchHHHHHHHHHHHhhhcCCCceEEecCcCCCC------------------------CC-----CHHHHH
Confidence 3444444443 4566676767776654 56799999999996 33 777888
Q ss_pred HHHHHhhhcC--CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----
Q 041151 88 RAKHYLSLTS--GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---- 161 (463)
Q Consensus 88 a~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---- 161 (463)
++.+++.... ....+|++..|.++||+++|+|+.+.+|+.+++++|++|+|+++++..+. .++ +|||+|+++
T Consensus 55 ~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~-~~~-~~gd~V~v~~P~Y 132 (409)
T PRK07590 55 AMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNIL-DIF-GPDNTIAVTDPVY 132 (409)
T ss_pred HHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHH-Hhc-CCCCEEEEeCCCC
Confidence 8877776421 14578999999999999999999888999999999999999999999865 555 799999997
Q ss_pred ---------cCce-----------e---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 162 ---------FHTT-----------W---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 162 ---------~g~~-----------~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
.|.+ + + +.++.+|. +. . ++|+|++||||||||.++|.++++
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~-~~------~------~~k~i~l~nP~NPTG~~~s~~~~~ 199 (409)
T PRK07590 133 PVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPEL-PE------E------KVDIIYLCFPNNPTGTVLTKEQLK 199 (409)
T ss_pred cchHHHHHHcCCcccccccccccceeEeecccccCCcccC-cc------c------CceEEEEeCCCCCcCCcCCHHHHH
Confidence 5654 3 2 22344443 21 2 799999999999999999999999
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 295 (463)
+|+++|++|+++||+||+|.++.+ ++..+.++..+ + ...+++|+++||||+| |+||+|+||++ +++++
T Consensus 200 ~l~~~a~~~~~~iI~De~Y~~~~~-~~~~~~~~~~~-~------~~~~~vi~~~SfSK~~-~~pGlRiG~~i---~~~~l 267 (409)
T PRK07590 200 AWVDYAKENGSLILFDAAYEAFIS-DPSLPHSIYEI-E------GARECAIEFRSFSKTA-GFTGTRCAYTV---VPKEL 267 (409)
T ss_pred HHHHHHHHcCeEEEEEccchhhcc-CCCCCcchhhC-C------CcccceEEEecCcccc-CCcCceeEEEE---cCHHH
Confidence 999999999999999999999877 33333444433 1 1124789999999999 99999999999 58888
Q ss_pred HHHH------------Hhhhhhc-ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 296 VDEI------------YKIASIA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 296 ~~~l------------~~~~~~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
++.+ ....... .+++.+.|.++..++... ...+.+++++.|+++++.+.+.|++. |+
T Consensus 268 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~---------~~~~~~~~~~~~~~~r~~l~~~L~~~-~~ 337 (409)
T PRK07590 268 KGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE---------GKAQIKELIDYYMENAKIIREGLESA-GF 337 (409)
T ss_pred hhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 8732 1222222 467889999998887521 12345567889999999999999998 78
Q ss_pred ccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHH
Q 041151 363 VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMES 442 (463)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~ 442 (463)
.+..|+|++|+|++++ .. .++.+++..+++++||.+.||+.|+. .+.+++||++..+++++++++++
T Consensus 338 ~~~~~~g~~f~wi~~~--~~----------~~~~~~~~~l~~~~gv~v~pg~~f~~-~~~~~iRi~~~~~~~~l~~~l~r 404 (409)
T PRK07590 338 EVYGGVNAPYIWVKTP--DG----------MSSWDFFDKLLQEANVVGTPGSGFGP-SGEGYFRLSAFGSRENVLEAMER 404 (409)
T ss_pred ceecCCcceEEEEECC--CC----------CCHHHHHHHHHHHCCEEEeChhHhCC-CCCCEEEEEccCCHHHHHHHHHH
Confidence 8888899999997654 21 12456677777889999999999975 35579999987778999999999
Q ss_pred HHHH
Q 041151 443 FKKF 446 (463)
Q Consensus 443 l~~~ 446 (463)
|+++
T Consensus 405 l~~~ 408 (409)
T PRK07590 405 IKKA 408 (409)
T ss_pred HHhh
Confidence 9875
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=381.18 Aligned_cols=333 Identities=18% Similarity=0.311 Sum_probs=262.1
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcC--CCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------c
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------F 162 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~ 162 (463)
....|++..|.++||++||+|+++.+| +++++++|++|+|+++++..++.+++ +|||.|++| .
T Consensus 86 ~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~-~pGD~Vlv~~P~Y~~~~~~~~~~~ 164 (496)
T PLN02376 86 DIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLA-DPGDVFLIPSPYYAAFDRDLRWRT 164 (496)
T ss_pred hhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhC-CCCCEEEECCCCccchHHHHHhhC
Confidence 456789999999999999999998888 67899999999999999999999998 999999997 4
Q ss_pred Ccee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 163 HTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 163 g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
|+++ ..+++++|+ +.+++++....+.+.++|+|+++|||||||.++|.+++++|+++|++++++||+||+|+.
T Consensus 165 G~~vv~v~~~~~~~~~~~~-~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~ 243 (496)
T PLN02376 165 GVEIIPVPCSSSDNFKLTV-DAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAA 243 (496)
T ss_pred CCEEEEEeCCCCccCcCCH-HHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccc
Confidence 5555 235789999 999987654333334789999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHH
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIF 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~ 316 (463)
+.| ++.++.++..+.+++.......+++++++||||.| |+||+|+||++. .++.+++.+.+... ...++.+.|.+
T Consensus 244 ~~f-~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~-glpGlRvG~li~--~~~~l~~~~~~~~~-~~~vs~~~Q~a 318 (496)
T PLN02376 244 TVF-AGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM-GLPGFRVGIVYS--FNDSVVSCARKMSS-FGLVSSQTQLM 318 (496)
T ss_pred ccc-CCCCcccHHHhhccccccccCCCeEEEEEeccccC-CCCcceEEEEEE--CCHHHHHHHHHHhh-cCCCCHHHHHH
Confidence 988 44456677666443200000113678899999999 999999999994 24666666655544 44689999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChH
Q 041151 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (463)
+..+|.+. .+ ..+.+...++.|+++++.+.+.|++. |+.+..|+||+|+|++++ ... .. .....++.
T Consensus 319 ~~~~L~d~-----~~--~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~aG~flwi~l~--~~~-~~--~~~~~~e~ 385 (496)
T PLN02376 319 LASMLSDD-----QF--VDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSNAGLFAWMDLR--HLL-RD--RNSFESEI 385 (496)
T ss_pred HHHHhCCh-----hH--HHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCceEEEEEEch--hhh-cc--CCchhHHH
Confidence 99999642 22 12334567888999999999999987 888889999999997764 210 00 00011235
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 041151 397 FYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 397 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+++..++++.||.+.||+.|+.. +.+|+||+++ .++++++.++++|++++.+.+.
T Consensus 386 ~l~~~ll~~~gV~v~pGs~F~~~-~~g~~Ri~fa~~~~~~l~~al~rl~~~l~~~~~ 441 (496)
T PLN02376 386 ELWHIIIDKVKLNVSPGSSFRCT-EPGWFRICFANMDDDTLHVALGRIQDFVSKNKN 441 (496)
T ss_pred HHHHHHHHcCCEEEeCccccCCC-CCCEEEEEeeCCCHHHHHHHHHHHHHHHHHhhh
Confidence 66777788889999999999763 4569999999 6889999999999999976543
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=362.31 Aligned_cols=324 Identities=19% Similarity=0.338 Sum_probs=264.9
Q ss_pred ceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHH
Q 041151 40 IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEF 119 (463)
Q Consensus 40 ~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 119 (463)
+++|+.|+|+. |. ++.+.+++.+... ....|+++.|.++||+++++|
T Consensus 2 ~~~~~~g~p~~------------------------~~-----~~~~~~~~~~~~~----~~~~Y~~~~G~~~lr~aia~~ 48 (350)
T TIGR03537 2 LFDFGTGDPKE------------------------PT-----PPFIRKALIDAVP----EVSQYPSALGTKALREAISGW 48 (350)
T ss_pred eEeccCCCCCC------------------------CC-----CHHHHHHHHHHHh----ccCCCCCCCCCHHHHHHHHHH
Confidence 68999999885 43 6778888776643 356899999999999999999
Q ss_pred HHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCC---CEEEEc-------------cCcee------cCCCcccChH
Q 041151 120 IERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEG---DGVVLL-------------FHTTW------KRQQIGVLII 176 (463)
Q Consensus 120 ~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~g---d~Vlvp-------------~g~~~------~~~~~~~d~~ 176 (463)
+.+.+|++++++ +|++|+|+++++..++.+++ ++| |.|++| .|+++ .++++.+|+
T Consensus 49 ~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~-~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~- 126 (350)
T TIGR03537 49 FERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI-DPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRL- 126 (350)
T ss_pred HHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc-CCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCH-
Confidence 998889999998 99999999999999999997 887 699997 67766 234677899
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.+++++++ ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+.++ . +..++...
T Consensus 127 ~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~-~~~~~~~~----- 193 (350)
T TIGR03537 127 EKVEKSILE------ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFG-E-PPHSALEV----- 193 (350)
T ss_pred HHHHHhhhh------ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccC-C-CCCchhhc-----
Confidence 999999887 7999999999999999999999999999999999999999999988763 2 33344332
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
+ .+++|+++||||++ |++|+|+||++ +++++++.+..... ...+++.+.|.++..++.. .
T Consensus 194 ---~-~~~~i~~~s~SK~~-g~~GlRiG~~~---~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-----------~ 254 (350)
T TIGR03537 194 ---G-IENVLAFHSLSKRS-GMTGYRSGFVA---GDEKLISFLRKLRANFGVASPDFVQAAAKAAWSD-----------D 254 (350)
T ss_pred ---C-cCCEEEEeeccccc-CCccccceeee---cCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCC-----------c
Confidence 2 24799999999999 89999999998 68999999988765 4556666788888776642 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 415 (463)
.+.++.++.++++++.+.+.|++. |+.+..|+|++|+|++++ .. .++.+++.. |.++||.|.||..
T Consensus 255 ~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~g~~~~~~~~~--~~----------~~~~~l~~~-L~~~gv~v~~g~~ 320 (350)
T TIGR03537 255 NHVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATFYLWVKVP--SG----------IDAKDYALR-LLENGIVVAPGEN 320 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeEEEEEEECC--CC----------CCHHHHHHH-HHHCCEEEcCchh
Confidence 233456788999999999999987 888889999999997654 21 124555555 4568999999999
Q ss_pred CCCCCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 416 f~~~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
|+. .+.+++||+++.+++++++++++|++
T Consensus 321 f~~-~~~~~~Ri~~~~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 321 FGS-GEEGYVRVALVPTLEECEEALRLWER 349 (350)
T ss_pred hCC-CCCCEEEEEecCCHHHHHHHHHHHhc
Confidence 975 33568999998777999999998875
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=376.80 Aligned_cols=332 Identities=18% Similarity=0.282 Sum_probs=249.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHh-cCCCC-C--CCcEEEcCCcHHHHHHHHHH-----Hhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERR-DGYPS-D--PELIFLTDGASKGVMQTLNC-----VIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~-~g~~~-~--~~~i~~t~G~~~al~~~~~~-----l~~ 152 (463)
|+.+.+ +.+++.. ..|+++.|.+++|++|++++.++ ++... . .++|++|+|+++++..++.+ ++
T Consensus 115 ~~~v~e-~~~~~~~-----~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll- 187 (527)
T PRK09275 115 DEFVYE-LVDGIIG-----DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLL- 187 (527)
T ss_pred CHHHHH-HHHHHhc-----CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcC-
Confidence 667777 5555432 25999999999999999966443 33322 2 34999999999999999986 56
Q ss_pred CCCCEEEEc-------------c--Ccee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 153 GEGDGVVLL-------------F--HTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 153 ~~gd~Vlvp-------------~--g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
+|||+|+++ . |.++ .+++|.+|. +++++++++ ++|+|+++|||||||.++|.
T Consensus 188 ~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~-~~l~~~~~~------~tkai~l~nP~NPTG~v~s~ 260 (527)
T PRK09275 188 KAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPD-SELEKLRDP------SIKALFLVNPSNPPSVAMSD 260 (527)
T ss_pred CCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCH-HHHHhhcCC------CCCEEEEeCCcCCcCCCCCH
Confidence 899999997 2 3433 245699999 999998776 89999999999999999999
Q ss_pred HHHHHHHHHhhh--CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 212 ANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 212 ~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+++++|+++|++ ++++||+||+|..+.+ .+.++... + . .++|+++||||+| |++|||+||++
T Consensus 261 e~l~~I~~ia~~~~~~l~II~DEvY~~f~~----~~~s~~~~---~----~--~~~I~v~SfSK~f-~mtG~RlG~i~-- 324 (527)
T PRK09275 261 ESLEKIADIVNEKRPDLMIITDDVYGTFVD----DFRSLFAV---L----P--YNTILVYSFSKYF-GATGWRLGVIA-- 324 (527)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCChhhcc----cccCHHHh---C----C--CCEEEEeehhhhc-cCcHhHHhhhh--
Confidence 999999999964 5999999999998754 23344432 1 2 3799999999999 99999999999
Q ss_pred CCChh-----HHHHH--------------------------------Hhhhh-hcccCChHHHHHHH-----HhcCCCCC
Q 041151 290 NIPPK-----TVDEI--------------------------------YKIAS-IALSPNVPAQIFMG-----LMVNPLKP 326 (463)
Q Consensus 290 ~~~~~-----~~~~l--------------------------------~~~~~-~~~~~~~~~q~~~~-----~~l~~~~~ 326 (463)
++++ ++..+ +++.. .+.+.+.+.|.+++ ++++..
T Consensus 325 -~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~~-- 401 (527)
T PRK09275 325 -LHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDEE-- 401 (527)
T ss_pred -cCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCc--
Confidence 4654 33222 34443 56788899998733 334321
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh----cCCCChHHHHHHH
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR----AGKVPDVFYCLRL 402 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l 402 (463)
....+.+++.|++|++.+.+.|. . ++...+|+|+||+|+++...........+ ....++.+++.++
T Consensus 402 --------~~~~~~~~~~~~~Rr~~l~~~Lg-~-~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~L 471 (527)
T PRK09275 402 --------DAYKKAMKDIIRRRYKALYEGLG-L-PEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRL 471 (527)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHcC-C-CCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHH
Confidence 12344578899999999999882 2 33445799999999887521100000000 0012478899999
Q ss_pred HHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHHhcccc
Q 041151 403 LEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQYEDYR 458 (463)
Q Consensus 403 l~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~~~~~~ 458 (463)
++++||.+.||+.||.. ++++|||++ .+++++.++.++|++++.+++++|+...
T Consensus 472 l~e~gV~v~PG~~Fg~~--~~~vRis~a~~~~~~~~~~~~rl~~~l~~y~~~~~~~~ 526 (527)
T PRK09275 472 AEETGVVLLPGGGFGGP--EWSVRVSLANLNEEDYAKIGKAIRKLLDEYYEEYKKSK 526 (527)
T ss_pred HhcCCEEEeCchhhCCC--CCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999863 458999999 7889999999999999999999997654
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=362.02 Aligned_cols=339 Identities=22% Similarity=0.309 Sum_probs=270.4
Q ss_pred ccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcC
Q 041151 18 VQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTS 97 (463)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~ 97 (463)
+++.+++.+.+.+.+.+.++.++++|+.|+|+. |. ++.+.+++.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~------------------------~~-----~~~~~~~~~~~~~~-- 49 (357)
T TIGR03539 1 LPDFPWDSLAPYKAKAASHPDGIVDLSVGTPVD------------------------PV-----PPLIRAALAAAADA-- 49 (357)
T ss_pred CCcchHHHHHHHHHHhhhCCCCeEEccCCCCCC------------------------CC-----CHHHHHHHHHHHhh--
Confidence 367788999999999988888899999999985 32 66677776654432
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEEc-------------c
Q 041151 98 GGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVLL-------------F 162 (463)
Q Consensus 98 ~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlvp-------------~ 162 (463)
..|+++.|.++||+++++|+.+++|++ +++++|++|+|+++++..++..+ + ++||.|+++ .
T Consensus 50 ---~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~-~~gd~Vl~~~p~y~~~~~~~~~~ 125 (357)
T TIGR03539 50 ---PGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGL-GPGDTVVIPELAYPTYEVGALLA 125 (357)
T ss_pred ---CCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcC-CCCCEEEECCCCcHHHHHHHHhc
Confidence 579999999999999999999888997 99999999999999999999887 6 899999997 3
Q ss_pred Ccee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 163 HTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 163 g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
|+++ ..+ |+ +.+.. . ++++|++++||||||.+++.+++++|+++|+++|++||+||+|.++.|+
T Consensus 126 g~~~~~v~----~~-~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~- 190 (357)
T TIGR03539 126 GATPVAAD----DP-TELDP---V------GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWE- 190 (357)
T ss_pred CCEEeccC----Ch-hhcCc---c------CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccC-
Confidence 3333 111 33 44332 2 7899999999999999999999999999999999999999999988773
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHh
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLM 320 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~ 320 (463)
+.. .+. +.+.. .+ ....++|+++||||.| +++|+|+||++ +++++++.+.+... ..++++.+.|.++..+
T Consensus 191 ~~~-~~~--~~~~~-~~-~~~~~vi~~~S~SK~~-~~~G~R~G~~i---~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 261 (357)
T TIGR03539 191 GRP-VSI--LDPRV-CG-GDHTGLLAVHSLSKRS-NLAGYRAGFVA---GDPALVAELLTVRKHAGLMVPAPVQAAMVAA 261 (357)
T ss_pred CCC-ccc--eeccc-CC-CccccEEEEecccccc-CCCceeEEEEe---cCHHHHHHHHHHHhhcccCCCHHHHHHHHHH
Confidence 322 121 11110 00 1224799999999999 89999999999 68999999987765 4678899999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHH
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (463)
|.+ ..+.+.+++.|+++++.+.+.|++. |+.+.+|+|++|+|+++. . +..++ .
T Consensus 262 l~~-----------~~~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~p~~~~~~~~~~~--~------------~~~~~-~ 314 (357)
T TIGR03539 262 LGD-----------DGHVAEQKARYAARRAQLKPALEKA-GFRIDHSEAGLYLWATRG--E------------DAWDT-V 314 (357)
T ss_pred cCC-----------HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCcCCCccEEEEEECC--C------------CHHHH-H
Confidence 852 1223457888999999999999987 888889999999996543 1 13333 4
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHH
Q 041151 401 RLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESF 443 (463)
Q Consensus 401 ~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l 443 (463)
..|+++||.+.||..|+. .+.+++|||++.+++++++++++|
T Consensus 315 ~~l~~~gV~v~pg~~f~~-~~~~~iRis~~~~~~~i~~~~~~l 356 (357)
T TIGR03539 315 DRLAELGILVAPGDFYGP-AGSQHVRVALTATDERIAAAVARL 356 (357)
T ss_pred HHHHhCCEEECCccccCC-CCCCeEEEEecCCHHHHHHHHHhh
Confidence 567889999999998865 355799999997779999999876
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=373.21 Aligned_cols=310 Identities=15% Similarity=0.113 Sum_probs=250.5
Q ss_pred HHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-
Q 041151 83 ADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL- 161 (463)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp- 161 (463)
+.+.+++.+... ....|+++.|.++||+++++|+....+ .+++|++|+|++++|..++.+++ +|||.|+++
T Consensus 101 p~~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al~~~~~~l~-~pgd~Vlv~~ 172 (431)
T PRK15481 101 PDLSRYFARLSR----TPRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAIERLLCAHL-LPGDSVAVED 172 (431)
T ss_pred HHHHHHHHHhhh----hhhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHHHHHHHHhC-CCCCEEEEeC
Confidence 445555554433 235799999999999999999875322 34699999999999999999998 999999997
Q ss_pred ------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhC-
Q 041151 162 ------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQE- 224 (463)
Q Consensus 162 ------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~- 224 (463)
.|+++ +.+..++|+ +.|++++++ ++|+|+++ |||||||.++|.+++++|+++|+++
T Consensus 173 P~y~~~~~~~~~~g~~~~~v~~~~~g~~~-~~l~~~~~~------~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~ 245 (431)
T PRK15481 173 PCFLSSINMLRYAGFSASPVSVDAEGMQP-EKLERALAQ------GARAVILTPRAHNPTGCSLSARRAAALRNLLARYP 245 (431)
T ss_pred CCcHHHHHHHHHcCCeEEeeccCCCCCCH-HHHHHHHhc------CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcC
Confidence 67666 444457899 999999876 78999998 9999999999999999999999999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
+++||+||+|.++.+. +. .+... ....++|+++||||+| + ||+|+||++ +++++++.+.+...
T Consensus 246 ~~~ii~De~Y~~~~~~-~~--~~~~~---------~~~~~vi~~~SfSK~~-~-~GlRiG~~i---~~~~~~~~~~~~~~ 308 (431)
T PRK15481 246 QVLVIIDDHFALLSSS-PY--HSVIP---------QTTQRWALIRSVSKAL-G-PDLRLAFVA---SDSATSARLRLRLN 308 (431)
T ss_pred CceEEecCchhhhccC-CC--CCCCc---------CCCCCEEEEeeecccc-C-CCceeEEEe---CCHHHHHHHHHHHh
Confidence 9999999999998762 21 22211 1124899999999999 8 999999999 68999999977654
Q ss_pred -hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhh
Q 041151 305 -IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 305 -~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
...+++.+.|.++..+|++. . +.++++++++.|+++++.+.+.|++. |+.+..|+||+|+|++++ .
T Consensus 309 ~~~~~~s~~~q~a~~~~l~~~-----~---~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~--~-- 375 (431)
T PRK15481 309 SGTQWVSHLLQDLVYACLTDP-----E---YQARLAQARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLD--T-- 375 (431)
T ss_pred ccccCCCHHHHHHHHHHHhCc-----c---HHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECC--C--
Confidence 34678999999999999743 2 33445668999999999999999988 888878999999996654 2
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~ 448 (463)
++.+++.. |.++||.+.||+.|+.....+++|||++ .+++++++++++|++++.
T Consensus 376 ----------~~~~~~~~-l~~~gV~v~pg~~f~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~~~ 430 (431)
T PRK15481 376 ----------DSQATALT-LAKSGWLVREGEAFGVSAPSHGLRITLSTLNDAEINRLAADLHQALN 430 (431)
T ss_pred ----------CHHHHHHH-HHHCCcEEecCCccccCCCCCeEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 13444444 5678999999999975433458999999 688999999999998864
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=361.26 Aligned_cols=345 Identities=20% Similarity=0.312 Sum_probs=267.2
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+|.++...+..++..+ +......+.++++|+.|+|+. |. ++.+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~l~~~~p~~------------------------~~-----~~~~~~~~ 49 (364)
T PRK07865 2 PVSARLPDFPWDTLAPA---KATAAAHPDGIVDLSVGTPVD------------------------PV-----PPVIQEAL 49 (364)
T ss_pred CccccCCCccHHHHHHH---HHHHHhcCCCEEEcCCCCCCC------------------------CC-----CHHHHHHH
Confidence 35667766665544443 333334566799999999874 33 66677776
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEEc------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVLL------ 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlvp------ 161 (463)
.+.... .+|+++.|.++||+++++|+.+++|++ +++++|++|+|+++++..++.++ + ++||.|+++
T Consensus 50 ~~~~~~-----~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~-~~gd~Vl~~~p~y~~ 123 (364)
T PRK07865 50 AAAADA-----PGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGL-GPGDVVVIPELAYPT 123 (364)
T ss_pred HHHHhh-----CCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcC-CCCCEEEECCCCccc
Confidence 654332 489999999999999999999999997 99999999999999999988887 6 899999997
Q ss_pred -------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 162 -------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 162 -------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
.|.++ ..+ ++ +.+++ . ++++|++++||||||.+++.+++++|+++|++++++||+||+
T Consensus 124 ~~~~~~~~g~~~~~~~----~~-~~l~~---~------~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~ 189 (364)
T PRK07865 124 YEVGARLAGATVVRAD----SL-TELGP---Q------RPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDEC 189 (364)
T ss_pred HHHHHHhcCCEEEecC----Ch-hhCCc---c------cceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 34444 111 23 44432 2 789999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChH
Q 041151 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVP 312 (463)
Q Consensus 234 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 312 (463)
|.++.++ +. ..+... +... + ....++|+++||||.| |+||+|+||++ +++++++.+.+... ..++++.+
T Consensus 190 y~~~~~~-~~-~~~~~~--~~~~-~-~~~~~~i~~~S~SK~~-~~~GlRiG~i~---~~~~~~~~~~~~~~~~~~~~~~~ 259 (364)
T PRK07865 190 YLELGWD-AE-PVSILD--PRVC-G-GDHTGLLAVHSLSKQS-NLAGYRAGFVA---GDPALVAELLEVRKHAGMMVPAP 259 (364)
T ss_pred hhhhccC-CC-CCcccc--cccc-C-CccceEEEEeechhcc-CCCceeeEEEe---cCHHHHHHHHHHHHhcCCCcCHH
Confidence 9998773 32 222111 1100 0 1235899999999999 89999999998 69999999987764 56788999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 313 AQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 313 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
.|.++..++.+ .++.++.++.|+++++.+.+.|++. |+.+..|+|++|+|+.+. .
T Consensus 260 ~q~~~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~----------- 314 (364)
T PRK07865 260 VQAAMVAALGD-----------DAHVREQRERYARRRAVLRPALEAA-GFRVDHSEAGLYLWATRG--E----------- 314 (364)
T ss_pred HHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCCccEEEEEeCC--C-----------
Confidence 99999998852 1234457788999999999999987 888888999999996553 1
Q ss_pred CChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFK 444 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~ 444 (463)
+..++ .+.|+++||.+.||..|+. .+.+++||+++.+++++++++++|+
T Consensus 315 -~~~~~-~~~l~~~gv~v~pg~~f~~-~~~~~iRi~~~~~~~~~~~~~~~l~ 363 (364)
T PRK07865 315 -DCWDT-VAWLAERGILVAPGDFYGP-AGAQHVRVALTATDERIAAAVERLA 363 (364)
T ss_pred -CHHHH-HHHHHHCCEEEeCccccCc-CCCCEEEEEecCCHHHHHHHHHHhh
Confidence 12333 4567889999999998875 3456999999977899999999885
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=362.88 Aligned_cols=362 Identities=13% Similarity=0.123 Sum_probs=269.6
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCc-CCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPH-ALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
+..++...+.++++.+...+++.. +++++||+.|.|. . +. |....+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~g~~~~~------------------------~~-----~~~~~~~~ 52 (404)
T PTZ00376 4 LFSQVPLGPPDPILGLAAAFKADP--SPSKVNLGIGAYRDE------------------------NG-----KPYVLESV 52 (404)
T ss_pred hhhcCCcCCCChHHHHHHHHhhcC--CcccEecccceeECC------------------------CC-----CEehhhHH
Confidence 355666778888877776664332 4578999999874 2 11 22333333
Q ss_pred HHHhhhc--CCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEE--EcCCcHHHHHHHHH---HHhcCCCCEEEEc-
Q 041151 90 KHYLSLT--SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIF--LTDGASKGVMQTLN---CVIRGEGDGVVLL- 161 (463)
Q Consensus 90 ~~~~~~~--~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~~~---~l~~~~gd~Vlvp- 161 (463)
.+++... .....+|+++.|.++||+++++|+...++..+++++|+ .|.|+++++..++. +++ +|||+|+++
T Consensus 53 ~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~-~~Gd~Vlv~~ 131 (404)
T PTZ00376 53 RKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL-PAGTTVYVSN 131 (404)
T ss_pred HHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhc-CCCCEEEEcC
Confidence 3333111 12457899999999999999999976666678899999 59999999988875 566 899999997
Q ss_pred ------------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 162 ------------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 162 ------------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
.|+++ + ++++++|+ +.+++.++.. .++++++++++||||||.++|.+++++|+++|++
T Consensus 132 P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~-~~l~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~ 207 (404)
T PTZ00376 132 PTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDF-DGMLEDLRTA---PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKR 207 (404)
T ss_pred CCchhHHHHHHHcCCceeeccccCcccCCcCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 66666 2 24689999 9999998642 0145777778999999999999999999999999
Q ss_pred CCeEEEecccccccccCCC-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH---
Q 041151 224 ENLVLLGDEVYQQNIYQDE-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI--- 299 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l--- 299 (463)
|+++||+||+|.++.|++. ..+.++..+. ...+++|+++||||+| ++||+|+||+++..+++++++.+
T Consensus 208 ~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~-------~~~~~vi~i~SfSK~~-~~~GlRvG~~~~~~~~~~~~~~l~~~ 279 (404)
T PTZ00376 208 KNLIPFFDMAYQGFASGDLDKDAYAIRLFA-------ERGVEFLVAQSFSKNM-GLYGERIGALHIVCANKEEAANVLSQ 279 (404)
T ss_pred CCcEEEEehhhcCccCCCHHHHHHHHHHHH-------hcCCcEEEEEeCCCcc-cccccccceEEEEeCCHHHHHHHHHH
Confidence 9999999999999887311 1122333321 1123799999999999 99999999984211688765544
Q ss_pred -Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEEe
Q 041151 300 -YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYSF 374 (463)
Q Consensus 300 -~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~~ 374 (463)
.+... ...+++.+.|.++..++++. ...+.+.++.++++++|+++++.+.+.|++.. ++.+..|+||||+|
T Consensus 280 ~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~ 355 (404)
T PTZ00376 280 LKLIIRPMYSSPPIHGARIADRILSDP----ELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMFSF 355 (404)
T ss_pred HHHHHhhhcCCCchHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEEEe
Confidence 33332 23456789999999998631 11234556677788899999999999999862 35566899999999
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHH
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~ 448 (463)
+++. .+++..+++++||.+.|| + ||+++ .+.++++.++++|++++.
T Consensus 356 ~~~~-----------------~~~~~~L~~~~~v~v~p~-------~----Ris~~~~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 356 TGLT-----------------KEQVERLIEKYHIYLLDN-------G----RISVAGLTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred cCCC-----------------HHHHHHHHHhCCEeecCC-------C----eEEEeccCHHhHHHHHHHHHHHHh
Confidence 5442 356778888889999996 1 99998 888999999999999875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=359.93 Aligned_cols=362 Identities=14% Similarity=0.119 Sum_probs=267.1
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHY 92 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~ 92 (463)
+++...+.+.++.+...+++.. ..++|||+.|.|.. |.. ..|. .+.+.+++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~g~~~~------------------~~~-~~p~-----~~~l~~a~~~~ 56 (396)
T PRK09257 3 EHLEAAPADPILGLMEAFRADP--RPDKVNLGVGVYKD------------------EQG-RTPV-----LRAVKKAEARL 56 (396)
T ss_pred ccCCCCCCChHHHHHHHHhhCC--CcCcEecceeeEEC------------------CCC-CEec-----cHHHHHHHHHh
Confidence 4556777888877766554332 24689999997531 000 0011 25666666666
Q ss_pred hhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcE--EEcCCcHHHHHHHHHHHh-cCCCCEEEEc--------
Q 041151 93 LSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI--FLTDGASKGVMQTLNCVI-RGEGDGVVLL-------- 161 (463)
Q Consensus 93 ~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~-~~~gd~Vlvp-------- 161 (463)
+.. ....+|++..|.++||+++++|+.+.++..+++++| ++|+|+++++..+++++. .+|||+|+++
T Consensus 57 ~~~--~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~ 134 (396)
T PRK09257 57 LET--ETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHR 134 (396)
T ss_pred ccc--ccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHH
Confidence 543 244689999999999999999997665666788887 999999999999987663 1799999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ + .+++++|+ +.+++.++.. .++..++++++||||||.++|.+++++|+++|++|+++||+
T Consensus 135 ~~~~~~g~~~v~v~~~~~~~~~~d~-~~l~~~~~~~---~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~ 210 (396)
T PRK09257 135 AIFEAAGLEVKTYPYYDAATKGLDF-DAMLADLSQA---PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFL 210 (396)
T ss_pred HHHHHcCCcEEEEeccccccCccCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 66666 3 34689999 9999988742 01345556679999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH----HHHHHhhhh-h
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT----VDEIYKIAS-I 305 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~----~~~l~~~~~-~ 305 (463)
||+|.++.++.+....++..+. ....++|+++||||+| +++|+|+||+++...+++. +..+.+... .
T Consensus 211 De~Y~~l~~~~~~~~~~~~~~~-------~~~~~vi~i~SfSK~~-~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (396)
T PRK09257 211 DIAYQGFGDGLEEDAYGLRAFA-------AAGLELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRVLSQLKATIRTN 282 (396)
T ss_pred eccccccccchHHHHHHHHHHH-------hcCCcEEEEEEcCCcC-ccccccceeEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 9999998762122233443332 1224799999999999 8999999999732124443 334434333 3
Q ss_pred cccCChHHHHHHHHhcCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--CcccccCCceeEEeeeccCCh
Q 041151 306 ALSPNVPAQIFMGLMVNPLKPGDISY-EQFVRESKGILESLRRRARMMTDGFNSC-R--NVVCNFTEGAMYSFPQIRLPP 381 (463)
Q Consensus 306 ~~~~~~~~q~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~-p--g~~~~~~~g~~~~~~~~~~~~ 381 (463)
..+++.+.|.++..++.+ +.+ ..+.++.+++++.|+++++.+.+.|++. + ++.+..|+||||+|++++
T Consensus 283 ~~~~~~~~q~~~~~~l~~-----~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~--- 354 (396)
T PRK09257 283 YSNPPAHGAAIVATILND-----PELRAEWEAELEEMRERIKAMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLT--- 354 (396)
T ss_pred cCCCcHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccceEEEecCCC---
Confidence 455789999999999864 222 1235566778999999999999999986 2 377888999999995442
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
.+++..+++++||.+.|. + ||+++ .+++++++++++|++++
T Consensus 355 --------------~~~~~~l~~~~~V~~~p~-------~----ri~~~~~~~~~i~~~~~~i~~~~ 396 (396)
T PRK09257 355 --------------PEQVDRLREEFGVYAVGS-------G----RINVAGLNESNIDYVAEAIAAVL 396 (396)
T ss_pred --------------HHHHHHHHHcCCEEEcCC-------C----eEEEeeCCHHHHHHHHHHHHhhC
Confidence 235677889999999871 2 99998 88899999999998753
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=352.81 Aligned_cols=355 Identities=23% Similarity=0.381 Sum_probs=277.9
Q ss_pred hhhhhhhcc--chhhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 11 MNENVKKVQ--YAVRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 11 ~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
+|+.++++. .+.++.+.+.+..+..+ ..++++|+.|+|+. +. |+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~------------------------~~-----~~~v~ 52 (394)
T PRK06836 2 ISEKIKGLLEKSSWIRKMFEEGARLKAEYGADNVFDFSLGNPSV------------------------PP-----PAAVK 52 (394)
T ss_pred CchHHHHHHhcccHHHHHHHHHHHHHhhcCCCCeEEecCcCCCC------------------------CC-----CHHHH
Confidence 556666654 23455555555555443 34589999999884 33 77888
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL----- 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----- 161 (463)
+++.+.+.........|++..|++++|++++++++..++..+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 53 ~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vli~~p~~~ 131 (394)
T PRK06836 53 EALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAIL-NPGDEVIVFAPYFV 131 (394)
T ss_pred HHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCCc
Confidence 88877765432235789999999999999999999888988999999999999999999999997 899999997
Q ss_pred --------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh-----
Q 041151 162 --------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ----- 223 (463)
Q Consensus 162 --------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~----- 223 (463)
.|.++ ..+.+++|+ +.+++.+++ ++++|++++||||||.+++.+++++|+++|++
T Consensus 132 ~~~~~~~~~g~~v~~v~~~~~~~~~d~-~~l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~ 204 (394)
T PRK06836 132 EYRFYVDNHGGKLVVVPTDTDTFQPDL-DALEAAITP------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEY 204 (394)
T ss_pred cHHHHHHHcCCEEEEEecCCccCcCCH-HHHHhhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhcc
Confidence 56665 223368999 999999976 89999999999999999999999999999999
Q ss_pred -CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH----
Q 041151 224 -ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE---- 298 (463)
Q Consensus 224 -~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~---- 298 (463)
|+++||+||+|.++.|+ +....++.. ..+++|+++||||.| |+||+|+||++ +++++.+.
T Consensus 205 ~~~~~ii~De~y~~~~~~-~~~~~~~~~----------~~~~~i~~~S~SK~~-~~pGlRiG~~~---~~~~~~~~~~~~ 269 (394)
T PRK06836 205 GRPIYLISDEPYREIVYD-GAEVPYIFK----------YYDNSIVVYSFSKSL-SLPGERIGYIA---VNPEMEDADDLV 269 (394)
T ss_pred CCCeEEEEeccccccccC-CCCCCChHH----------ccCcEEEEecchhhc-cCcceeeEEEe---cCHHHhhhHHHH
Confidence 89999999999998873 333333322 123789999999999 89999999999 46655332
Q ss_pred --HHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEe
Q 041151 299 --IYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSF 374 (463)
Q Consensus 299 --l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~ 374 (463)
+..... ...+++.+.|.++..++.+. ..++.|+++++.+.+.|+++ |+.+..|+|+||+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---------------~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~ 333 (394)
T PRK06836 270 AALVFANRILGFVNAPALMQRVVAKCLDAT---------------VDVSIYKRNRDLLYDGLTEL-GFECVKPQGAFYLF 333 (394)
T ss_pred HHHHHHhhccccccCCHHHHHHHHHHhCCh---------------HHHHHHHHHHHHHHHHHHhC-CCEeecCCceEEEE
Confidence 111121 12467888999999888521 12456888899999999988 88888999999999
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
++++ .. ++.+++ ..|.++||.+.||+.|+. .+++||+++.+++++++++++|+++++++
T Consensus 334 ~~~~--~~-----------~~~~~~-~~l~~~gv~v~~g~~f~~---~~~iRi~~~~~~~~~~~~i~~l~~~l~~~ 392 (394)
T PRK06836 334 PKSP--EE-----------DDVAFC-EKAKKHNLLLVPGSGFGC---PGYFRLSYCVDTETIERSLPAFEKLAKEY 392 (394)
T ss_pred EeCC--CC-----------CHHHHH-HHHHhCCEEEECchhcCC---CCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 6543 21 245554 667888999999999974 24899999988899999999999988654
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=354.99 Aligned_cols=351 Identities=21% Similarity=0.272 Sum_probs=263.0
Q ss_pred hhhhccc-hhhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 14 NVKKVQY-AVRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 14 ~~~~~~~-~~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
.+.++.+ +.+..+...+++.... ++++++|+.|+|.. +. |+.+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~v~~~~~ 56 (402)
T TIGR03542 6 HFLKLKSSYLFSEINRRVNEFRKKHPSADIIRLGIGDTTQ------------------------PL-----PASVIEAFH 56 (402)
T ss_pred CccccCcchHHHHHHHHHHHHHhccCCCCeEEcCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 3444444 4555666666666643 57899999999885 33 778888888
Q ss_pred HHhhhcC--CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 91 HYLSLTS--GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 91 ~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
+.+.+.. .....|++..|.++||+++|+++.+. .+++++|++|+|+++++..++ .++ .+||.|+++
T Consensus 57 ~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~---~~~~d~I~it~Ga~~al~~l~-~l~-~~gd~Vlv~~P~y~~~ 131 (402)
T TIGR03542 57 NAVDELASEETFRGYGPEQGYPFLREAIAENDYRG---RIDPEEIFISDGAKCDVFRLQ-SLF-GSDNTVAVQDPVYPAY 131 (402)
T ss_pred HHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc---CCCHHHEEECCCcHHHHHHHH-Hhc-CCCCEEEEeCCCCcch
Confidence 7776521 12457988899999999999986321 278999999999999999864 555 799999997
Q ss_pred ------cCc-----------ee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHH
Q 041151 162 ------FHT-----------TW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 218 (463)
Q Consensus 162 ------~g~-----------~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~ 218 (463)
.|. ++ + ..++.+|+ +. .. ++++|++||||||||.++|.+++++|+
T Consensus 132 ~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~-----~~------~~~~i~l~nP~NPTG~~~s~~~~~~l~ 199 (402)
T TIGR03542 132 VDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDL-PE-----EP------KIDIIYLCSPNNPTGTVLTKEQLKELV 199 (402)
T ss_pred HHHHHHcCCccccccccccceEEEeecchhhCCCCCc-cc-----cC------CceEEEEeCCCCCCCccCCHHHHHHHH
Confidence 555 44 1 12343443 21 02 689999999999999999999999999
Q ss_pred HHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhHH-
Q 041151 219 RFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV- 296 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~- 296 (463)
++|++++++||+||+|.++.+ ++..+.++..+ +. .+++|+++||||.| |+||+|+||++ ++++++
T Consensus 200 ~~a~~~~~~iI~De~y~~~~~-~~~~~~~~~~~--------~~~~~~vi~~~SfSK~~-g~pGlRiG~~i---~~~~l~~ 266 (402)
T TIGR03542 200 DYANEHGSLILFDAAYSAFIS-DPSLPHSIFEI--------PGAKECAIEFRSFSKTA-GFTGVRLGWTV---VPKELTY 266 (402)
T ss_pred HHHHHcCeEEEEEchhhhhcc-CCCCCcchhhC--------CCCcccEEEEecCcccc-CCCCcceEEEE---ecHHHhh
Confidence 999999999999999999877 33323344332 22 24789999999999 99999999999 577776
Q ss_pred -------HHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 041151 297 -------DEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTE 368 (463)
Q Consensus 297 -------~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~ 368 (463)
..+.+.. ....+++.+.|.++..++.+. .+ .+..+.++.|+++++.+.+.|++. |+.+..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~-----~~----~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~ 336 (402)
T TIGR03542 267 ADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGE-----GL----QPILEAISYYMENARILRKALEAA-GFKVYGGE 336 (402)
T ss_pred cchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCc-----ch----hHHHHHHHHHHHHHHHHHHHHHhc-CceecCCC
Confidence 2222222 223468889999988887532 12 223345678999999999999987 78888888
Q ss_pred ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
+++|+|++++ .. .++.++...+++++||.+.||+.|+. .+.+++||+++.+++++++++++|+++
T Consensus 337 ~~~f~~v~l~--~~----------~~~~~l~~~l~~~~gv~v~pg~~f~~-~~~~~iRis~~~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 337 HAPYLWVKTP--EG----------ISSWDFFDFLLYQYHVVGTPGSGFGP-SGEGFVRFSAFGKRENIVEACERIKEA 401 (402)
T ss_pred ceeEEEEECC--CC----------CCHHHHHHHHHHhCCEEEeCchhhCC-CCCCEEEEEecCCHHHHHHHHHHHHhh
Confidence 9999996654 22 13556777778788999999999975 345799999887789999999999875
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=356.43 Aligned_cols=342 Identities=18% Similarity=0.258 Sum_probs=258.0
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH-HHHhhhc--CCCCCccCCCCCCHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA-KHYLSLT--SGGLGAYSDSRGIPGVRK 114 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~-~~~~~~~--~~~~~~Y~~~~g~~~lr~ 114 (463)
+++|+|+.|+|+. .|. |...+..+ .+.+... ......|+++.|.++||+
T Consensus 30 ~~~i~l~~g~p~~-----------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~ 81 (416)
T PRK09440 30 PGAIMLGGGNPAH-----------------------IPE-----MEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIE 81 (416)
T ss_pred CCceeccCCCCCc-----------------------cCC-----HHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHH
Confidence 5689999999983 121 33444444 4444431 123468999999999999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-----CCCEEEE-c---c----------Cc------ee---
Q 041151 115 EVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-----EGDGVVL-L---F----------HT------TW--- 166 (463)
Q Consensus 115 ~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----~gd~Vlv-p---~----------g~------~~--- 166 (463)
+||+|+.+++|+.+++++|++|+|+++++..++.+++ + +||.|++ + + +. .+
T Consensus 82 aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~-~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~ 160 (416)
T PRK09440 82 ALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFA-GRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELL 160 (416)
T ss_pred HHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHh-ccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccc
Confidence 9999999889999999999999999999999999997 5 5888988 3 1 11 11
Q ss_pred cCC--CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCC
Q 041151 167 KRQ--QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 ~~~--~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~ 244 (463)
..+ .+++|+ +.|+ +.. ++++|+++|||||||.++|.+++++|+++|++++++||+||+|..+.. ..
T Consensus 161 ~~~~~~~~~d~-~~l~--~~~------~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~--~~- 228 (416)
T PRK09440 161 PEGQFKYHVDF-EHLH--IDE------DTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFP--GI- 228 (416)
T ss_pred cccccccCCCH-HHcc--cCC------CceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCC--Cc-
Confidence 122 368899 9987 233 689999999999999999999999999999999999999999975321 11
Q ss_pred ccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCC
Q 041151 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNP 323 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~ 323 (463)
......+ ...+++|+++|||| + ++||+|+||++ +++++++.+.+... ...+++.+.|.++..++++
T Consensus 229 --~~~~~~~------~~~~~vI~~~SfSK-~-~~pGlRiG~~i---~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~ 295 (416)
T PRK09440 229 --IFSEATP------LWNPNIILCMSLSK-L-GLPGVRCGIVI---ADEEIIEALSNMNGIISLAPGRLGPAIAAEMIES 295 (416)
T ss_pred --chhhcCc------cccCCeEEEecccc-c-CCCcceEEEEe---CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcc
Confidence 1111111 11347999999999 5 78999999999 69999999988876 5678899999999999974
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHH
Q 041151 324 LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC-R--NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-p--g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (463)
. .+..+.. +.+++.|+++++.+.+.|.+. + ++.+..|+|++|+|++++-. . .++.++.
T Consensus 296 ~-----~~~~~~~--~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~fiw~~~~~~-~----------~~~~~~~- 356 (416)
T PRK09440 296 G-----DLLRLSE--TVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIFLWLWFKDL-P----------ITTEELY- 356 (416)
T ss_pred c-----hHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceEEEEECCCC-C----------CCHHHHH-
Confidence 3 2332222 235778888888888888763 3 35667899999999765410 1 1244554
Q ss_pred HHHHhcCeEeeCCCCCCCCC------CCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 401 RLLEATGISTVPGSGFGQKE------GIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 401 ~ll~~~gI~v~pg~~f~~~~------~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
..++++||.+.||+.|+... +.+++|||++.+++++++++++|++++++..+
T Consensus 357 ~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~~~~~l~~~i~~l~~~~~~~~~ 414 (416)
T PRK09440 357 QRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQDDEEIEKGIAILAEEVEKAYA 414 (416)
T ss_pred HHHHHCCEEEechHhhCCCCccccCCcCceEEEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999985321 13589999987789999999999999987654
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=360.48 Aligned_cols=328 Identities=18% Similarity=0.284 Sum_probs=240.7
Q ss_pred HHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHH-HHHHhcCCC-CCCC--cEEEcCCcHHHHHHHHHH-----HhcC
Q 041151 83 ADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE-FIERRDGYP-SDPE--LIFLTDGASKGVMQTLNC-----VIRG 153 (463)
Q Consensus 83 ~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~-~~~~~~g~~-~~~~--~i~~t~G~~~al~~~~~~-----l~~~ 153 (463)
+..+.++.+.+.. ..|+++.|..++++++++ |+.+.++.. .+++ +|++|+|+++++..++.+ ++ +
T Consensus 109 ~~~~~~~~~~~~~-----~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll-~ 182 (521)
T TIGR03801 109 DAFLYEMCDGIIG-----DNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELL-K 182 (521)
T ss_pred CHHHHHHHHHhhc-----CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcC-C
Confidence 3555666665533 259877888888888885 665554443 3444 899999999999999987 56 8
Q ss_pred CCCEEEEc---------------cCcee------cCCC-----cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 154 EGDGVVLL---------------FHTTW------KRQQ-----IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 154 ~gd~Vlvp---------------~g~~~------~~~~-----~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
|||+|+++ +|.++ .... |.+|. +++++++.+ ++|+|+++|||||||.
T Consensus 183 pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~-~~l~~~~~~------~~kai~l~nP~NPTG~ 255 (521)
T TIGR03801 183 KGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPD-KELEKLRDP------SIKALFVVNPSNPPSV 255 (521)
T ss_pred CCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCH-HHHHHhcCC------CCcEEEEeCCCCCCCC
Confidence 99999997 35554 1222 88999 999987765 8999999999999999
Q ss_pred CCCHHHHHHHHHHhhhC--CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 208 CLSEANLREILRFCYQE--NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 208 ~~s~~~l~~l~~~a~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
++|.+++++|+++|++| +++||+||+|..+.+ .+.++... . .+++|+++||||+| |++|||+||
T Consensus 256 vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~----~~~sl~~~--------~-~~~vI~v~SfSK~f-g~~G~RlG~ 321 (521)
T TIGR03801 256 AMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD----DFRSLFAE--------L-PYNTIGVYSFSKYF-GATGWRLGT 321 (521)
T ss_pred CCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc----cccchhhh--------C-CCCEEEEEcchhhc-cCchhhhhh
Confidence 99999999999999986 999999999998754 23354432 1 13799999999999 999999999
Q ss_pred EEecCCChh-----HH--------HHH------------------------Hhhhh-hcccCChHHHH--H---HHHhcC
Q 041151 286 FEMTNIPPK-----TV--------DEI------------------------YKIAS-IALSPNVPAQI--F---MGLMVN 322 (463)
Q Consensus 286 ~~~~~~~~~-----~~--------~~l------------------------~~~~~-~~~~~~~~~q~--~---~~~~l~ 322 (463)
++. +++ ++ +.+ +++.. .+.+.+.+.|. + +.+++.
T Consensus 322 i~~---~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~ 398 (521)
T TIGR03801 322 IAL---HKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMD 398 (521)
T ss_pred hhc---CchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhc
Confidence 994 543 22 112 22333 45667788776 2 334443
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh----cCCCChHHH
Q 041151 323 PLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR----AGKVPDVFY 398 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 398 (463)
.. ....+.+++.+++|++.+.+.| .+ .+...+|+|+||+|+++..-....+..++ ....++.++
T Consensus 399 ~~----------~~y~~~~~~~~~~R~~~l~~~L-g~-~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~ 466 (521)
T TIGR03801 399 KE----------NAYKAETKDICRRREKLLFRGL-GL-PLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDV 466 (521)
T ss_pred cc----------hhHHHHHHHHHHHHHHHHHHhc-CC-CCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHH
Confidence 11 1234457788999999999998 22 23345789999999887521100000000 001246889
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 399 CLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 399 ~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
+.++++++||.+.||..|+.+ ++++|||++ .+++++.++.++|++++.++.++|
T Consensus 467 ~~~L~~e~gV~v~PG~~Fg~~--~~~vRisla~l~~~~~~~~~~rl~~~~~~~~~~~ 521 (521)
T TIGR03801 467 LFRLAEETGIVLLPGGGFGGP--EWSVRVSLANLNEYDYAEIGRAIRKILDEYYEAW 521 (521)
T ss_pred HHHHHHhCCEEEeCchhcCCC--CCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999963 458999999 788999999999999998888775
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=347.69 Aligned_cols=320 Identities=14% Similarity=0.170 Sum_probs=254.1
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
.++++|+|+.|++++ +. |+.+++++.+.+... ..|+ ..|.++||++
T Consensus 27 ~~~~~i~l~~nen~~------------------------~~-----~~~v~~a~~~~~~~~----~~Yp-~~g~~~Lr~a 72 (366)
T PRK01533 27 GDHSFVKLASNENPF------------------------GC-----SPRVLDELQKSWLDH----ALYP-DGGATTLRQT 72 (366)
T ss_pred CCCceEEeCCCCCCC------------------------CC-----CHHHHHHHHHHHHhc----CcCC-CCCHHHHHHH
Confidence 356799999999886 44 888999988766542 3465 5689999999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cCCCcccChHHHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KRQQIGVLIINDL 179 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~~~~~~d~~~~l 179 (463)
+|++++ +++++|++|+|+++++..++.+++ ++||.|+++ .|.++ +.+++++|+ +.|
T Consensus 73 ia~~~~------~~~~~I~vt~Gs~e~i~~~~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~d~-~~l 144 (366)
T PRK01533 73 IANKLH------VKMEQVLCGSGLDEVIQIISRAVL-KAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYDL-DEI 144 (366)
T ss_pred HHHHhC------CCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecCCCCcCH-HHH
Confidence 999985 789999999999999999999998 899999996 67666 445678999 999
Q ss_pred HHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCC
Q 041151 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259 (463)
Q Consensus 180 ~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++++++ ++++|++||||||||.+++.+++++|+++|++++ ++|+||+|.++.+. +. ..+.... +
T Consensus 145 ~~~~~~------~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~-~~-~~~~~~~---~---- 208 (366)
T PRK01533 145 SSVVDN------DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTA-KD-FPETLPL---L---- 208 (366)
T ss_pred HHHhCc------CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhcc-cc-CcchhHH---h----
Confidence 998876 7899999999999999999999999999998876 56779999987662 21 1222222 2
Q ss_pred CCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 041151 260 SKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESK 339 (463)
Q Consensus 260 ~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (463)
+..+++|+++||||+| |+||+|+||++ +++++++.+.+... .++++.+.|.++..+|++ ..+.+
T Consensus 209 ~~~~~vi~~~SfSK~~-~l~GlRiG~~i---~~~~~~~~l~~~~~-~~~~~~~~q~aa~~~l~~-----------~~~~~ 272 (366)
T PRK01533 209 EKHKNILVLRTFSKAY-GLASFRVGYAV---GHEELIEKLNVVRL-PFNVSSLAQKAATIAFGD-----------DEFIE 272 (366)
T ss_pred ccCCCEEEEeCchHHh-cChHHHHhHHh---CCHHHHHHHHHhcC-CCCcCHHHHHHHHHHhCC-----------HHHHH
Confidence 3445899999999999 99999999999 68999999988775 688999999999999863 12233
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC
Q 041151 340 GILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK 419 (463)
Q Consensus 340 ~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~ 419 (463)
..++.++++++.+.+.++.+ |+.+.+++|+ |+|+++ +. ...+ ...|.++||.|++ |.
T Consensus 273 ~~~~~~~~~r~~~~~~l~~~-g~~~~~~~~n-f~~~~~--~~-------------~~~~-~~~l~~~GI~Vr~---~~-- 329 (366)
T PRK01533 273 EIVRVNTEGLRQYESFCKEN-EIPFYQSQTN-FIFLPV--EN-------------GGEI-YEACAHAGFIIRP---FP-- 329 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCccCCCcCc-EEEEeC--CC-------------HHHH-HHHHHHCCcEEcc---CC--
Confidence 45566777788888888877 8888877655 677544 32 2333 4556689999998 41
Q ss_pred CCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHHhcc
Q 041151 420 EGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYED 456 (463)
Q Consensus 420 ~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~~~~ 456 (463)
+++||+++.. +++++++++|+++++..+.+-+|
T Consensus 330 ---~~iRis~~~~-~~~~~l~~al~~~~~~~~~~~~~ 362 (366)
T PRK01533 330 ---NGVRITVGTR-EQNEGVISVLQQHFENKKRKSRD 362 (366)
T ss_pred ---CceEEeCCCH-HHHHHHHHHHHHHHHhccccccc
Confidence 3799999976 79999999999988877655443
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=369.98 Aligned_cols=388 Identities=14% Similarity=0.192 Sum_probs=282.7
Q ss_pred CChhhhhhhhhhccchhhhhHHHHHHHHHH-hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHH
Q 041151 6 LDYESMNENVKKVQYAVRGELYLRASELQK-EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPAD 84 (463)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 84 (463)
++-+.-+..+.+.+.+.+..+......... ++.++|+|+.|+|++ |. |+.
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~vI~LsinE~d~------------------------pp-----Pp~ 714 (1082)
T PLN02672 664 LPEEEESSKFIGFSSSARSALKEAELSVSGSQESSLIHMDVDESFL------------------------PV-----PSA 714 (1082)
T ss_pred cchhhhhHhhhCCCchhHHHHHhcccCCcccCCCCEEEEeCCCCCC------------------------CC-----CHH
Confidence 333444556667777766666443333333 367899999999996 54 889
Q ss_pred HHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--
Q 041151 85 AIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-- 161 (463)
+++++.+++... .+ ..|++++|+++++|+.+++|+++++ ++|++|+|+++++..++.+++ +|||.|++|
T Consensus 715 V~eAi~eal~~~-----~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl-~pGD~VLVp~P 786 (1082)
T PLN02672 715 VKASIFESFVRQ-----NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCV-QEGGTLCFPAG 786 (1082)
T ss_pred HHHHHHHHHhhc-----CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCC
Confidence 999998877541 22 3456889999999999999998865 599999999999999999998 999999997
Q ss_pred -----------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCC-CCCccCCCHHHHHHHHHHhhh
Q 041151 162 -----------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPG-NPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 162 -----------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~-NPtG~~~s~~~l~~l~~~a~~ 223 (463)
.|+++ .+++|.+|+ +.|++++++. +.++|++|||| ||||.++|.+++++|+++|++
T Consensus 787 tY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~-d~Le~al~~~-----~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k 860 (1082)
T PLN02672 787 SNGTYVSAAKFLKANFRRIPTKSSDGFKLTA-KTLASTLETV-----KKPWVYISGPTINPTGLLYSNSEIEEILSVCAK 860 (1082)
T ss_pred ChHHHHHHHHHcCCEEEEEecccccCCCCCH-HHHHHHhccC-----CCCEEEEECcCCCCcCccCCHHHHHHHHHHHHH
Confidence 66666 245799999 9999998651 34689999997 999999999999999999999
Q ss_pred CCeEEEecccccccccCCCC-CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 224 ENLVLLGDEVYQQNIYQDER-PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
||++||+||+|+++.|++.. ...++......+.. ..+..++|+++||||.| ++||+|+||++. .++++++.+.+.
T Consensus 861 ~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~-~sks~nVIvL~SfSKkf-~lpGLRIGylIa--p~~eLi~~l~~~ 936 (1082)
T PLN02672 861 YGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKS-SNPSFAVALLGGLSTEL-LSGGHEFGFLAL--NDSVLIDAFHSA 936 (1082)
T ss_pred cCCEEEEeCCCCccccCCCCCcccchhhHHHHhcc-ccCCceEEEEeCcHHhh-ccHHHHheeEEe--CCHHHHHHHHHh
Confidence 99999999999999884321 11122222112200 01124799999999999 999999999994 245589999876
Q ss_pred hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC-Ch
Q 041151 303 ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL-PP 381 (463)
Q Consensus 303 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~-~~ 381 (463)
.. ...+..+.|.++.+++.......+ .+..+..+.++.|+++++.+.+.|+++ |+.+.+|+|+||+|+++.- ..
T Consensus 937 ~~-~s~~~~~~q~Aaaaalall~~~~~---~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~PeGGFfLwl~l~~~l~ 1011 (1082)
T PLN02672 937 PG-LSRPHSTLKYTIKKLLGLKNQKSS---DLLDGVAEQKKILKSRAERLKETLEAC-GWDVLEPQGGISMVAKPSAYLG 1011 (1082)
T ss_pred hh-hcCCCcHHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEecCCcEEEEEEEcccccc
Confidence 54 223334456555544420000011 234456678889999999999999998 8999999999999976531 00
Q ss_pred hhHHHHhh---cC-CCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 382 KAIEAAKR---AG-KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 382 ~~~~~~~~---~~-~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
...+.... .+ ..++.+++..+++++||.+.||+.|+. .+|+||+++.+++++++++++|+++.+
T Consensus 1012 ~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~---~g~~RIsfa~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1012 KTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI---PGYCRFSFALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred ccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC---CCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 00000000 00 124677888888888999999998875 349999999888899999999998653
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=345.29 Aligned_cols=359 Identities=13% Similarity=0.116 Sum_probs=257.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCC-CcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGN-PHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
++..++.+.+.+.|+.+...+++. ....+++|+.|. |+. +. ++.+.++
T Consensus 22 ~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~l~l~~g~~p~~------------------------~~-----~p~~~~~ 70 (423)
T PLN02397 22 SRFEHVEPAPPDPILGVTEAFLAD--PSPVKLNLGVGAYRTE------------------------EG-----KPVVLNV 70 (423)
T ss_pred hHHHcCCcCCCChHHHHHHHHhhC--CCcceEecccceeeCC------------------------CC-----CcccchH
Confidence 345566777888887766655433 244578888885 563 11 2223333
Q ss_pred HHHH----hhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcE-----EEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 89 AKHY----LSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI-----FLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 89 ~~~~----~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i-----~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
+.++ +.. ....+|+++.|.++||+++++|+.+.++...++++| +.++|+. .+...+..++ +|||+|+
T Consensus 71 ~~~a~~~~~~~--~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~-~l~~~~~~~~-~pGd~Vl 146 (423)
T PLN02397 71 VRKAEQRLLAG--SRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSL-RLGAEFLARF-YPGSTIY 146 (423)
T ss_pred HHHHHHHhhcc--CCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHH-HHHHHHHHHh-CCCCEEE
Confidence 3332 322 345689999999999999999996554433344443 3344433 3445555555 7999999
Q ss_pred Ec-------------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 160 LL-------------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 160 vp-------------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++ .|+++ + .+++++|+ +.+++.+... .+++++|++++||||||.+++.+++++|+++
T Consensus 147 v~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~-~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~ 222 (423)
T PLN02397 147 IPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDF-DGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDL 222 (423)
T ss_pred EeCCCchhHHHHHHHcCCeEEEeecccCcCCccCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence 97 67666 2 23589999 9999887642 1157888888999999999999999999999
Q ss_pred hhhCCeEEEecccccccccCCC-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH-
Q 041151 221 CYQENLVLLGDEVYQQNIYQDE-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE- 298 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~- 298 (463)
|++|+++||+||+|.++.|++. .+..++..+. ....++|+++||||+| +++|||+||+++..+++++++.
T Consensus 223 a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~-------~~~~~vI~~~SfSK~~-~~~G~RvG~~v~~~~~~~~~~~~ 294 (423)
T PLN02397 223 IKSKNHLPFFDSAYQGFASGDLDADAQSVRMFV-------EDGHEILVAQSYAKNM-GLYGERVGALSVVCKSADVAVRV 294 (423)
T ss_pred HHhCCcEEEEecccCCccCCchhhhhHHHHHHH-------hcCCcEEEEEECcccC-CCccccceEEEEEeCCHHHHHHH
Confidence 9999999999999999988321 1223333321 1123699999999999 9999999998521146665544
Q ss_pred ---HHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----cccccCCce
Q 041151 299 ---IYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN----VVCNFTEGA 370 (463)
Q Consensus 299 ---l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg----~~~~~~~g~ 370 (463)
+.+... ..++++.+.|.++..+|++. ...+.+.++.+++++.|+++++.+.+.|+++ | +.+..|+|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~----~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~-~~~~~~~~~~p~gg 369 (423)
T PLN02397 295 KSQLKLIARPMYSNPPIHGASIVATILGDP----ELFSEWTKELKGMADRIISMRQKLYDALEAR-GSPGDWSHITKQIG 369 (423)
T ss_pred HHHHHHHHhcccCCCcHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcccCCce
Confidence 334443 34567889999999888631 1123444556788999999999999999988 5 777889999
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~ 448 (463)
||+|++++ .+++..+++++||.+.+ .+ ||+++ .+.+++++++++|++++.
T Consensus 370 ~fl~~~l~-----------------~~~~~~Ll~~~~V~v~~-------~~----Ri~~~~~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 370 MFSFTGLN-----------------KEQVDRMTKEYHIYMTR-------DG----RISMAGLSSKNVPYLADAIHAVVT 420 (423)
T ss_pred EEEecCCC-----------------HHHHHHHHHhCCEEECC-------CC----eEEEeeCCHHHHHHHHHHHHHHHh
Confidence 99996543 34788999999999963 22 99998 899999999999999974
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=341.59 Aligned_cols=323 Identities=14% Similarity=0.207 Sum_probs=253.0
Q ss_pred hhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCc
Q 041151 23 RGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGA 102 (463)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~ 102 (463)
...+...++++..++.++++|+.|.++. +. |+.+.+++.+.+.. ...
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~~~~~~~----~~~ 61 (357)
T PRK14809 15 GRGIEEVARELGLDPDDLVKLSSNENPH------------------------GP-----SPAAVEAIREAAER----VHS 61 (357)
T ss_pred CCCHHHHHHHhCCCccceeEecCCCCCC------------------------CC-----CHHHHHHHHHHHhh----hhc
Confidence 3345555666655677899999998775 33 77788888776543 367
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---
Q 041151 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW--- 166 (463)
Q Consensus 103 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~--- 166 (463)
|++ .|.++||+++|++++ +++++|++|+|+++++..++.+++ +|||.|+++ .|..+
T Consensus 62 Y~~-~~~~~lr~~ia~~~~------~~~~~I~it~G~~~al~~~~~~~~-~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~ 133 (357)
T PRK14809 62 YPK-ASHADLTAALADRWD------VSPEQVWLANGGDGALDYLARAML-DPGDTVLVPDPGFAYYGMSARYHHGEVREY 133 (357)
T ss_pred CCC-CCHHHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHHHHHHHcCCeEEEE
Confidence 875 688999999999985 889999999999999999999998 999999997 44444
Q ss_pred ---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCC
Q 041151 167 ---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243 (463)
Q Consensus 167 ---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~ 243 (463)
.++++.+|. +.+++.. + ++|+|++||||||||.++|.+++++|+++|++ +++||+||+|.++.+ ..
T Consensus 134 ~l~~~~~~~~~~-~~~~~~~-~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~-~~- 202 (357)
T PRK14809 134 PVSKADDFEQTA-DTVLDAY-D------GERIVYLTSPHNPTGSEIPLDEVEALAERTDE-ETLVVVDEAYGEFAE-RP- 202 (357)
T ss_pred ecccCcCCCcCH-HHHHHhh-c------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCcc-CcEEEEechhhhccC-Cc-
Confidence 234677787 8877754 2 58999999999999999999999999999875 789999999999865 21
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCC
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNP 323 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~ 323 (463)
+..... ...+++|+++||||+| |+||+|+||++ +++++++.+.+... .++++.+.|.++..++.+
T Consensus 203 ---~~~~~~-------~~~~~vi~~~SfSK~~-~~~GlRiG~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~l~~ 267 (357)
T PRK14809 203 ---SAVALV-------EERDDVAVLRTFSKAY-GLAGLRLGYAV---VPEEWADAYARVNT-PFAASELACRAGLAALDD 267 (357)
T ss_pred ---hhHHHH-------hhCCCEEEEecchhHh-cCcchhheeee---cCHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCC
Confidence 211211 2234799999999999 99999999999 68899999988765 677889999999888752
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHH
Q 041151 324 LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLL 403 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 403 (463)
..+.++.++.++++++.+.+.|... + .+.+++|+|+++. ++.+++ ..|
T Consensus 268 -----------~~~~~~~~~~~~~~r~~l~~~L~~~-~----~~~~g~f~~~~~~---------------~~~~~~-~~l 315 (357)
T PRK14809 268 -----------DEHVERTVETARWAREYIREELDAP-T----WESAGNFVLAEVG---------------DASAVA-EAA 315 (357)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhcCc-c----CCCCCCEEEEECC---------------CHHHHH-HHH
Confidence 2334556778889999999988653 2 2467788896542 134555 446
Q ss_pred HhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 404 EATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 404 ~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+++||.|.||+.|+.+ +++||+++. .+++++++++|+++++
T Consensus 316 ~~~gv~v~~g~~f~~~---~~iRls~~~-~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 316 QERGVIVRDCTSFGLP---ECIRITCGT-REETERAVEVLNEVLA 356 (357)
T ss_pred HHCCEEEEECccCCCC---CeEEEecCC-HHHHHHHHHHHHHHhc
Confidence 7889999999999752 489999985 4799999999988764
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-42 Score=341.88 Aligned_cols=323 Identities=16% Similarity=0.209 Sum_probs=248.8
Q ss_pred cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHH
Q 041151 39 KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE 118 (463)
Q Consensus 39 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 118 (463)
.+++|+.|.|.+ +. |+.+++++.+++... .....|++ .|.++||++||+
T Consensus 29 ~~~~l~~~~~~~------------------------~~-----~~~~~~~~~~~~~~~-~~~~~Y~~-~G~~~Lr~aia~ 77 (374)
T PRK02610 29 QLDRLDTNEFPY------------------------DL-----PPDLKQKLAWLYQQG-IESNRYPD-GGHEALKQAIAE 77 (374)
T ss_pred ceeEecCCCCCC------------------------CC-----CHHHHHHHHHHHhhc-ccccCCCC-CchHHHHHHHHH
Confidence 479999999885 44 888999988876641 12357865 699999999999
Q ss_pred HHHHhc--CCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC-EEEEc-------------cCcee---c--CCCcccChHH
Q 041151 119 FIERRD--GYPSDPELIFLTDGASKGVMQTLNCVIRGEGD-GVVLL-------------FHTTW---K--RQQIGVLIIN 177 (463)
Q Consensus 119 ~~~~~~--g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-~Vlvp-------------~g~~~---~--~~~~~~d~~~ 177 (463)
|+++++ |+.+++++|++|+|+++++..++.+++ .+|| .|+++ .|.++ + .+++++|+ +
T Consensus 78 ~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~-~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~ 155 (374)
T PRK02610 78 YVNESAAGSSQITPANISVGNGSDELIRSLLIATC-LGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDL-A 155 (374)
T ss_pred HhCccccccCCCCHHHEEEcCChHHHHHHHHHHHc-CCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCH-H
Confidence 998776 577899999999999999998888887 7886 78887 66666 2 33589999 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
.|+++++... ..++|+|++||||||||.++|.+++++|+++| ++++||+||+|.++.+ . ..+..+
T Consensus 156 ~l~~~~~~~~--~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~-~----~~~~~~------ 220 (374)
T PRK02610 156 AAQSAIEQTQ--NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQ-T----TLVGEL------ 220 (374)
T ss_pred HHHHHHHhhc--CCCceEEEEeCCCCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCc-c----chHHHH------
Confidence 9999886410 01799999999999999999999999999876 4999999999998743 1 122222
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 337 (463)
....++|+++||||+| |+||+|+||++ +++++++.+.+... .++++.+.|.++..++.. .+.+.+
T Consensus 221 --~~~~~~ivi~SfSK~~-g~~GlRiG~~v---~~~~l~~~l~~~~~-~~~~~~~~q~a~~~~l~~-------~~~~~~- 285 (374)
T PRK02610 221 --AQHPNWVILRTFSKAF-RLAAHRVGYAI---GHPELIAVLEKVRL-PYNLPSFSQLAAQLALEH-------RQELLA- 285 (374)
T ss_pred --hcCCCEEEEEecchhc-cCcccceeeee---cCHHHHHHHHHhcC-CCCCCHHHHHHHHHHhcC-------HHHHHH-
Confidence 3334689999999999 99999999999 69999999988774 567899999999988852 222333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 338 SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
.++..++ +++.+.+.|+.++++.+ .|++++|+|++++ ... ++.+++ ..|.++||.|.++
T Consensus 286 --~~~~~~~-~r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~--~~~----------~~~~~~-~~l~~~gi~v~~~---- 344 (374)
T PRK02610 286 --AIPEILQ-ERDRLYQALQELPQLRV-WPSAANFLYLRLS--QDA----------ALAALH-QALKAQGTLVRHT---- 344 (374)
T ss_pred --HHHHHHH-HHHHHHHHHHhCCCcEe-CCCcceEEEEeCC--CCC----------CHHHHH-HHHHHCCEEEEeC----
Confidence 3444444 46778888888878765 4788899996553 221 244544 4568899999763
Q ss_pred CCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 418 ~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++||+++.+ +++++++++|+++++++
T Consensus 345 ----~~~lRls~~~~-~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 345 ----GGGLRITIGTP-EENQRTLERLQAALTQL 372 (374)
T ss_pred ----CCeEEEeCCCH-HHHHHHHHHHHHHHhhc
Confidence 23799999964 67899999999888654
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=345.83 Aligned_cols=339 Identities=25% Similarity=0.401 Sum_probs=272.6
Q ss_pred cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH-HhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 39 KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH-YLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 39 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~-~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
++|||+.|++...... |. ++++++++.+ .... .....|+++.|.++||+++|
T Consensus 2 ~~I~l~~~~~~~~~~~--------------------~~-----~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia 54 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQN--------------------PP-----PPAAIKAAIRGAATS--SSFLGYPPPQGYPELREAIA 54 (363)
T ss_dssp TEEESSSSSTSSTTSS--------------------HH-----HHHHHHHHHHHHHHH--TGCTSSTCTTHHHHHHHHHH
T ss_pred CEEEEECCCCCCcccc--------------------cc-----hHHHHHHHHHHhhcc--cccccCCCchhhHHHHHHHH
Confidence 5899999998851110 11 5666666665 2222 36789999999999999999
Q ss_pred HHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHH-hcCCCCEEEEc-------------cCcee------cCCCcccChH
Q 041151 118 EFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCV-IRGEGDGVVLL-------------FHTTW------KRQQIGVLII 176 (463)
Q Consensus 118 ~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l-~~~~gd~Vlvp-------------~g~~~------~~~~~~~d~~ 176 (463)
+|+++.+|++++++ +|++|+|+.+++..++..+ . ++|++|+++ .|.++ ...++.+|+
T Consensus 55 ~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~-~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~- 132 (363)
T PF00155_consen 55 DFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI-NPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDP- 132 (363)
T ss_dssp HHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS-STTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETH-
T ss_pred HHhhhccCcccccceEEEEecccccchhhhhhcccc-cccccceecCCccccccccccccCceeeeccccccccccccc-
Confidence 99998899999999 9999999999999999998 6 799999997 56655 346899999
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
++|++.+++...++.++++|++++||||||.+++.+++++|+++|++++++||+||+|.++.++ .....+. ...+
T Consensus 133 ~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~-~~~~~~~---~~~~- 207 (363)
T PF00155_consen 133 EALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFG-DPDFGPI---RSLL- 207 (363)
T ss_dssp HHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSS-SSHTHHH---HGHH-
T ss_pred cccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccC-CCccCcc---cccc-
Confidence 9999999874433324789999999999999999999999999999999999999999999883 2222221 1222
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
+...++|+++|+||+| |++|+|+||+++ ++++++.+.+... .+..+.+.|.++..++.+ .....+
T Consensus 208 ---~~~~~vi~~~S~SK~~-g~~GlRvG~i~~---~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~-------~~~~~~ 272 (363)
T PF00155_consen 208 ---DEDDNVIVVGSLSKSF-GLPGLRVGYIVA---PPELIERLRRFQR-SGLSSSPMQAAAAAALSD-------PELVEK 272 (363)
T ss_dssp ---TTTSTEEEEEESTTTT-TSGGGTEEEEEE---EHHHHHHHHHHHH-HTTSSHHHHHHHHHHHHH-------HHHHHH
T ss_pred ---cccccceeeeeccccc-cccccccccccc---hhhhhhhhhhccc-cccccchhhHHHHHhhhc-------cccccc
Confidence 4444699999999999 999999999994 8899999988876 333388888888888742 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
+.+++++.|+++++.+.+.|++. |+.+..+++++|+|+.++.. ++.+++.++++++||.+.||..|
T Consensus 273 ~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~L~~~~gi~v~pg~~~ 338 (363)
T PF00155_consen 273 WLEELRERLRENRDLLREALEEI-GITVLPPEAGFFLWVRLDPN-------------DAEELAQELLEEYGILVRPGSYF 338 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHSBSSEEEEEESHH-------------HHHHHHHHHHHHHTEEEEEGGGG
T ss_pred ccccchhhHHHHHHHHHHHHHHh-hhheeeccCccEEEEEcccc-------------hHHHHHHHHHHhCCEEEEecCCC
Confidence 77889999999999999999998 99999999999999766511 24677778777779999999999
Q ss_pred CCCCCCcEEEEEec-CCcCcHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL-PAEEDMPAIMESF 443 (463)
Q Consensus 417 ~~~~~~~~lRis~~-~~~e~i~~~~~~l 443 (463)
+. .+++||+++ .+++++++++++|
T Consensus 339 ~~---~~~iRi~~a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 339 GV---PGYIRISLASHSEEDLEEALERL 363 (363)
T ss_dssp TS---TTEEEEEGGCSCHHHHHHHHHHH
T ss_pred CC---CCEEEEEeccCCHHHHHHHHhhC
Confidence 87 449999995 8999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=337.70 Aligned_cols=318 Identities=17% Similarity=0.235 Sum_probs=246.8
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
...+++||+.|.|.. +. |+.+++++.+.+.. ...|++. +.++||++
T Consensus 17 ~~~~~~~l~~~~~~~------------------------~~-----p~~~~~a~~~~~~~----~~~Y~~~-~~~~lr~~ 62 (354)
T PRK06358 17 TKNMILDFSANINPL------------------------GV-----PESLKQAITENLDK----LVEYPDP-DYLELRKR 62 (354)
T ss_pred CccceEEecCCCCCC------------------------CC-----CHHHHHHHHHHHHh----hhcCCCc-cHHHHHHH
Confidence 344589999997664 22 78888888876643 4678765 68999999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c---CCCcccChH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K---RQQIGVLII 176 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~---~~~~~~d~~ 176 (463)
+|+|++ +++++|++|+|+++++..++.++ .+ +.|+++ .|.++ + ..++.+|.
T Consensus 63 ia~~~~------~~~~~i~it~Ga~~~l~~~~~~~--~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~- 132 (354)
T PRK06358 63 IASFEQ------LDLENVILGNGATELIFNIVKVT--KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAANE- 132 (354)
T ss_pred HHHHhC------CChhhEEECCCHHHHHHHHHHHh--CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCccH-
Confidence 999985 89999999999999999999986 45 456675 56555 2 33466774
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.++ .+.+ ++++|++++||||||.+++.+++++|+++|++++++||+||+|.++.++ +.+ .+.... +
T Consensus 133 ~~~~-~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~-~~~-~~~~~~---~- 199 (354)
T PRK06358 133 IVLE-EIKE------EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEE-NET-ISMINY---L- 199 (354)
T ss_pred HHHH-hhcc------CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCC-ccc-hhHHHh---c-
Confidence 4444 3443 6899999999999999999999999999999999999999999998873 332 232222 2
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
+...++|+++||||+| |+||+|+||+++ .++++++.+.+... .++++.+.|.++..++.+ ..
T Consensus 200 ---~~~~~vi~~~S~SK~~-gl~G~RiG~lv~--~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~-----------~~ 261 (354)
T PRK06358 200 ---ENFKNLIIIRAFTKFF-AIPGLRLGYGLT--SNKNLAEKLLQMRE-PWSINTFADLAGQTLLDD-----------KE 261 (354)
T ss_pred ---cCCCCEEEEEechhhc-cCcchhheeeec--CCHHHHHHHHHhCC-CCcchHHHHHHHHHHhcc-----------HH
Confidence 4445899999999999 999999999984 35678889988776 678899999999999852 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
+.++.++.++++++.+.+.|++++|+.+..|+|+ |+|+++ |. ..++... |.++||.+.||+.|
T Consensus 262 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~--~~-------------~~~~~~~-l~~~gI~v~~~~~f 324 (354)
T PRK06358 262 YIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-FIFFKL--EK-------------PIDLRKE-LLKKGILIRSCSNY 324 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-EEEEEc--Cc-------------hHHHHHH-HHHCCeEEEECCCC
Confidence 3445677889999999999998888888888776 778544 32 3455544 55689999999999
Q ss_pred CCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 417 ~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
+. .+.+++||+++.+ ++.+++++.|++++
T Consensus 325 ~~-~~~~~iRls~~~~-~~~~~l~~~l~~~~ 353 (354)
T PRK06358 325 RG-LDENYYRVAVKSR-EDNKKLLKALEVIL 353 (354)
T ss_pred CC-CCCCEEEEEeCCH-HHHHHHHHHHHHHh
Confidence 54 2456899999976 78889998888765
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=317.19 Aligned_cols=327 Identities=23% Similarity=0.373 Sum_probs=276.1
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcC--CCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------c
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------F 162 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~ 162 (463)
....|.+..|.+.+|+++|+|+.+-.| +.++|+++++++|++.++..+..+|+ +|||..++| .
T Consensus 113 ~la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY~gfdrdl~~rT 191 (471)
T KOG0256|consen 113 ELAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA-DPGDAFLVPTPYYPGFDRDLRWRT 191 (471)
T ss_pred hHhhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc-CCCceeeecCCCCCcccccceecc
Confidence 457899999999999999999987665 56899999999999999999999998 999999998 4
Q ss_pred Ccee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 163 HTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 163 g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
|+++ ..+++.++. ++||.++++.++.+.++|.|+|+||+||.|.+++++++..++.++.++|+.||+||+|+.
T Consensus 192 gveivpv~c~Ss~~f~itv-~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~ 270 (471)
T KOG0256|consen 192 GVEIVPVHCSSSNGFQITV-EALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAG 270 (471)
T ss_pred CceEEEEEeecCCCccccH-HHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcc
Confidence 4444 678899999 999999999988888999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHH
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIF 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~ 316 (463)
..| ++..+.|+.++..+. +...+++-++.|+||-| |+||+|+|.++. -++.++++..++.+ ...+|+..|..
T Consensus 271 sVF-~~~~F~Sv~ev~~~~---~~~~~rvHivyslSKD~-GlpGfRvGviYS--~ne~VvsaA~kmss-f~~vSs~tQ~~ 342 (471)
T KOG0256|consen 271 SVF-DKSEFRSVLEVRKDP---HLDPDRVHIVYSLSKDF-GLPGFRVGVIYS--NNEDVVSAATKMSS-FGLVSSQTQYL 342 (471)
T ss_pred ccc-CccCceEHHHHhhcc---ccCCCcEEEEEEecccc-CCCceEEEEEEe--cChHHHHHHHHHhh-ccCCcHHHHHH
Confidence 999 566888888876554 11556889999999999 999999999997 57888888888888 66789999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChH
Q 041151 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (463)
++.+|.+. +..+.| +++...+++.+.+++.+.|+++ |+.+....+|+|+|++++.. +...+ ++...
T Consensus 343 la~LLSD~----~f~~~y---l~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~AGlF~wvDlr~l---L~s~t---fe~El 408 (471)
T KOG0256|consen 343 LASLLSDE----EFTREY---LRENNKRLRIRHRYIVEGLKAL-GIPCLKSNAGLFCWVDLRKL---LTSLT---FEGEL 408 (471)
T ss_pred HHHHhchH----HHHHHH---HHHHHHHHHHHHHHHHhhHHhc-CCceeecCCeeEEEEEhHHh---cCcCC---hHHHH
Confidence 99999742 233333 4457788999999999999999 99999999999999998621 11111 22345
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 397 FYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 397 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
++...++.+-++.+.||+.|.+. ..+|+|++|+ ..++.++-+++||++++.+.
T Consensus 409 ~Lw~~i~~~vklnlSpG~s~~C~-EpGWFRvcFAn~~~~t~~~am~Ri~~~~~~~ 462 (471)
T KOG0256|consen 409 ELWERILDNVKLNLSPGSSCHCH-EPGWFRVCFANMSEETLEVAMRRLKQFLDSQ 462 (471)
T ss_pred HHHHHHHHhhccccCCCCcceec-CCCeEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 66677777779999999999884 4569999999 55555555999999999854
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=335.75 Aligned_cols=352 Identities=16% Similarity=0.174 Sum_probs=273.5
Q ss_pred hhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhh
Q 041151 16 KKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSL 95 (463)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~ 95 (463)
.+++++.+..+........ .+.++|+|+.|.+.. +. ++.+.+++.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~------------------------~~-----~~~~~~a~~~~~~~ 56 (380)
T PRK06225 7 AKVPPSGFKTSNEFFDYVF-KDKEMIWMGQNTNHL------------------------GP-----HEEVREAMIRCIEE 56 (380)
T ss_pred cccCcchhhhHHHHHHHHh-hcCCeEEccCCCCCC------------------------CC-----CHHHHHHHHHHHhc
Confidence 3667777776666554443 356799999998775 43 78888888887765
Q ss_pred cCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------c
Q 041151 96 TSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------F 162 (463)
Q Consensus 96 ~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~ 162 (463)
.....|+++.|.++||++++++++ +++++|++|+|+++++..++.+++ .+||.|+++ .
T Consensus 57 --~~~~~y~~~~g~~~lr~~ia~~l~------~~~~~v~~~~g~t~al~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~ 127 (380)
T PRK06225 57 --GEYCKYPPPEGFPELRELILKDLG------LDDDEALITAGATESLYLVMRAFL-SPGDNAVTPDPGYLIIDNFASRF 127 (380)
T ss_pred --CCCCCCCCCcchHHHHHHHHHhcC------CCCCcEEEeCCHHHHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHHh
Confidence 245679999999999999999985 678899999999999999999997 899999996 4
Q ss_pred Ccee---c----CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccc
Q 041151 163 HTTW---K----RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235 (463)
Q Consensus 163 g~~~---~----~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~ 235 (463)
|.++ + ..++.+|+ +.+++.+.+ ++++|++++||||||.++|.+++++|+++|+++|+++|+||+|.
T Consensus 128 g~~~~~v~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~ 200 (380)
T PRK06225 128 GAEVIEVPIYSEECNYKLTP-ELVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYR 200 (380)
T ss_pred CceEEeeccccccCCccCCH-HHHHhhcCC------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHH
Confidence 5555 2 12478999 999998876 79999999999999999999999999999999999999999998
Q ss_pred ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHH
Q 041151 236 QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQI 315 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~ 315 (463)
++.. +.. +...+ + ..++|++.||||++ |++|+|+||++ +++++++.+.......++++.+.|.
T Consensus 201 ~~~~--~~~--~~~~~--------~-~~~~i~~~s~SK~~-g~~G~RiG~i~---~~~~l~~~~~~~~~~~~~~~~~~~~ 263 (380)
T PRK06225 201 DFAR--EHT--LAAEY--------A-PEHTVTSYSFSKIF-GMAGLRIGAVV---ATPDLIEVVKSIVINDLGTNVIAQE 263 (380)
T ss_pred HHhc--cCC--chhhc--------C-CCCEEEEeechhhc-CCccceeEEEe---cCHHHHHHHHHHHhcccCCCHHHHH
Confidence 7643 121 22221 2 24689999999999 99999999999 5889999888765446778899999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHHHHhhcCCCC
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAKRAGKVP 394 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (463)
++..++... ..+.+++++.++++++.+.+.|++++|+.+ ..|.+++|+|+++... + .+
T Consensus 264 ~a~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~-~----------~~ 322 (380)
T PRK06225 264 AAIAGLKVK----------DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA-G----------ID 322 (380)
T ss_pred HHHHHHhcc----------hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccc-c----------CC
Confidence 988887521 122344566778888889999988777543 2455677778655311 1 12
Q ss_pred hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 395 DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 395 ~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+.++... |.++||.++||..|+...+.+++|++++.+++++++++++|++++++++.
T Consensus 323 ~~~l~~~-l~~~gi~v~~g~~~~~~~~~~~iR~s~~~~~e~l~~~~~~l~~~~~~~~~ 379 (380)
T PRK06225 323 PEDLVEY-LLERKIFVRQGTYTSKRFGDRYIRVSFSIPREQVEVFCEEFPDVVETLRT 379 (380)
T ss_pred HHHHHHH-HHHCCEEEcCCcccCcCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhhc
Confidence 4455444 55889999999877654456799999998789999999999999987653
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=337.73 Aligned_cols=327 Identities=18% Similarity=0.193 Sum_probs=244.6
Q ss_pred HHHHHHHHHhhhc-CCCCCccCCCCCCHHHHHHHHHHHHHhcCCCC--CCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 84 DAIARAKHYLSLT-SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS--DPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 84 ~~~~a~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~--~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
.+++++.+.+... ....++|+++.|.++||+++++++.++++... +.++|++|+|+++++..++.+++ +|||.|++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv 98 (388)
T PRK08637 20 MYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLL 98 (388)
T ss_pred chHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc-CCCCEEEE
Confidence 4455555544431 23568999999999999999999876553211 23689999999999999999998 99999999
Q ss_pred c--------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L--------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p--------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|+++ + .+++++|+ +.+++.++.... ...++++++|||||||.++|.+++++|+++|
T Consensus 99 ~~P~y~~~~~~~~~~~g~~vv~v~~~~~~~~~d~-~~l~~~~~~~~~--~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~ 175 (388)
T PRK08637 99 PDHNWGNYKLTFNTRRGAEIVTYPIFDEDGGFDT-DALKEALQAAYN--KGKVIVILNFPNNPTGYTPTEKEATAIVEAI 175 (388)
T ss_pred cCCCCccHHHHHHHhcCCEEEEecccCCCCcCCH-HHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence 6 45555 3 25678999 999998871100 1445667779999999999999999999988
Q ss_pred hh-----CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCce--EEEEecCCcccCCCCCceeEEEEecC---C
Q 041151 222 YQ-----ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQ--LVSFHTVSKGYWGECGQRGGYFEMTN---I 291 (463)
Q Consensus 222 ~~-----~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~S~SK~~~g~~G~R~G~~~~~~---~ 291 (463)
++ |+++||+||+|.++.|+ +....++..... +..++ +|+++|+||.+ ++||+|+||++++. +
T Consensus 176 ~~~~~~~~~~~iI~De~Y~~l~~~-~~~~~~~~~~~~------~~~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~~~~~~ 247 (388)
T PRK08637 176 KELADAGTKVVAVVDDAYFGLFYE-DSYKESLFAALA------NLHSNILAVKLDGATKEE-FVWGFRVGFITFGTKAGS 247 (388)
T ss_pred HHHHhcCCcEEEEecccchhcccC-CccchhhHHHhh------cccccceEEEeccccccC-CCcccceEEEEEccccCC
Confidence 75 89999999999999883 333334322111 12234 45567999998 89999999999742 3
Q ss_pred ChhHHHHHHhhh----h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcc
Q 041151 292 PPKTVDEIYKIA----S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---RNVV 363 (463)
Q Consensus 292 ~~~~~~~l~~~~----~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~ 363 (463)
++++++.+.+.. . ..+++|.+.|.++..++++ +. +.++.++.+..++++++.+.+.|+.. +++.
T Consensus 248 ~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-----~~---~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~ 319 (388)
T PRK08637 248 SQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNS-----PE---FDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQ 319 (388)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCC-----HH---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 577888876421 1 2457899999999999963 22 34445567778999999999988764 2688
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMES 442 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~ 442 (463)
+.+|+||||+|++++ . . ++.+++..+++++||.+.+. +.+++||+++ .+.+++++++++
T Consensus 320 ~~~~~~g~~~~~~l~--~-~----------~~~~l~~~l~~~~gv~~~~~-------~~~~iRi~~~~~~~~~i~~~~~~ 379 (388)
T PRK08637 320 AYPFNSGYFMCLKLK--G-V----------DAEELRVHLLEKYGIGTIAL-------NETDLRIAFSCVEEEDIPELFDS 379 (388)
T ss_pred cccccceEEEEecCC--h-H----------HHHHHHHHHhhhcceEEEec-------cCCceEEEeecCCHHHHHHHHHH
Confidence 889999999996553 2 1 25667777677889988742 2348999999 788999999999
Q ss_pred HHHHHHHH
Q 041151 443 FKKFNDEF 450 (463)
Q Consensus 443 l~~~l~~~ 450 (463)
|+++++++
T Consensus 380 l~~~~~~~ 387 (388)
T PRK08637 380 IYKAIKDL 387 (388)
T ss_pred HHHHHHhc
Confidence 99998764
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=336.35 Aligned_cols=314 Identities=17% Similarity=0.152 Sum_probs=249.9
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
.++++|+.|.|.. +. ++.+.+++.+.+.. ..|.+..|.+++|+++|
T Consensus 29 ~~~i~l~~n~~~~------------------------~~-----~~~v~~a~~~~~~~-----~~~~p~~g~~~lr~~ia 74 (359)
T PRK03158 29 EKIVKLASNENPY------------------------GP-----SPKVKEAIAAHLDE-----LALYPDGYAPELRTKVA 74 (359)
T ss_pred CceEEecCCCCCC------------------------CC-----CHHHHHHHHHHHHH-----hhcCCCCcHHHHHHHHH
Confidence 3689999998774 22 77788888777654 34556679999999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cCCCcccChHHHHHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KRQQIGVLIINDLQQ 181 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~~~~~~d~~~~l~~ 181 (463)
++++ +++++|++|+|+++++..++.+++ ++||.|+++ .|.++ +.+++++|+ +.+++
T Consensus 75 ~~~~------~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~d~-~~l~~ 146 (359)
T PRK03158 75 KHLG------VDEEQLLFGAGLDEVIQMISRALL-NPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLKDGGHDL-EAMLK 146 (359)
T ss_pred HHhC------CCHHHEEECCCHHHHHHHHHHHHh-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecCCCCcCH-HHHHH
Confidence 9985 788999999999999999999998 899999996 56665 444678999 99998
Q ss_pred HHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC
Q 041151 182 SVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261 (463)
Q Consensus 182 ~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
.+++ ++++|++++||||||.+++.+++.++++.|+ ++++||+||+|.++.++ +.....+..+ +.
T Consensus 147 ~~~~------~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~-~~~~ii~De~y~~~~~~-~~~~~~~~~~--------~~ 210 (359)
T PRK03158 147 AIDE------QTKIVWICNPNNPTGTYVNHEELLSFLESVP-SHVLVVLDEAYYEYVTA-EDYPDTLPLL--------EK 210 (359)
T ss_pred hcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchHhhcCC-cccccHHHHH--------Hh
Confidence 8766 7999999999999999999999999998875 69999999999998773 2222222222 23
Q ss_pred CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 262 ~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
.+++|+++||||.| |++|+|+||++ +++++++.+.+... .++++.+.|.++..++++ ..+.+..
T Consensus 211 ~~~vi~~~S~SK~~-g~~GlRiG~~v---~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~-----------~~~~~~~ 274 (359)
T PRK03158 211 YENLIVLRTFSKAY-GLAALRVGYGI---ASEELIEKLNIARP-PFNTTRIAQYAAIAALED-----------QAFLKEC 274 (359)
T ss_pred cCCEEEEEechHhh-cCcchhhehhc---CCHHHHHHHHHhcC-CCCCCHHHHHHHHHHhcC-----------HHHHHHH
Confidence 34799999999999 99999999999 69999999988776 578899999999999852 1223345
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
++.++++++.+.+.|.+. |+.+.++ +++|+|+++. . ++.+++.. |.++||.+.||+.|+.
T Consensus 275 ~~~~~~~~~~~~~~l~~~-~~~~~~~-~g~~i~~~~~--~------------~~~~~~~~-l~~~gv~v~~g~~f~~--- 334 (359)
T PRK03158 275 VEKNAEGLEQYYAFCKEY-GLFYYPS-QTNFIFVDTG--R------------DANELFEA-LLKKGYIVRSGAALGF--- 334 (359)
T ss_pred HHHHHHHHHHHHHHHHHC-CCeeCCC-cCcEEEEECC--C------------CHHHHHHH-HHHCCeEEeeCCCCCC---
Confidence 667888888999999888 7777654 5678996553 1 24455555 4568999999999974
Q ss_pred CcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 422 IFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 422 ~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
.+++||+++. .+++++++++|+++
T Consensus 335 ~~~iRi~~~~-~~~~~~l~~al~~~ 358 (359)
T PRK03158 335 PTGVRITIGL-KEQNDKIIELLKEL 358 (359)
T ss_pred CCeEEEecCC-HHHHHHHHHHHHHh
Confidence 2489999995 47899999999875
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=335.24 Aligned_cols=321 Identities=18% Similarity=0.245 Sum_probs=254.6
Q ss_pred cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHH
Q 041151 39 KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE 118 (463)
Q Consensus 39 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 118 (463)
..++|+.|.|++ +. |+.+++++.+++.........|++ .|.+.||+++|+
T Consensus 27 ~~i~l~~~~~~~------------------------~~-----~~~~~~al~~~l~~~~~~~~~Y~~-~g~~~lr~aia~ 76 (368)
T PRK03317 27 VPVRLNTNENPY------------------------PP-----SPALVADIAEAVAEAAAGLNRYPD-RDAVALRADLAA 76 (368)
T ss_pred ceeEecCCCCCC------------------------CC-----CHHHHHHHHHHHhhhhhhhccCCC-CchHHHHHHHHH
Confidence 358999998875 44 888999998877542224578876 588999999999
Q ss_pred HHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c-CCCcccChHHHHHH
Q 041151 119 FIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K-RQQIGVLIINDLQQ 181 (463)
Q Consensus 119 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~-~~~~~~d~~~~l~~ 181 (463)
|+++++|+++++++|++|+|+++++..++.+++ +|||.|+++ .|.++ + .+++++|+ +.+++
T Consensus 77 ~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~l~~ 154 (368)
T PRK03317 77 YLTAQTGVGLTVENVWAANGSNEILQQLLQAFG-GPGRTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDV-DAAVA 154 (368)
T ss_pred HhhhhccCCCChhhEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCH-HHHHH
Confidence 999998999999999999999999999999998 999999986 45555 2 45789999 99999
Q ss_pred HHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC
Q 041151 182 SVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261 (463)
Q Consensus 182 ~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
++.+. ++++|++++||||||.+++.+++++|+++| +++||+||+|.++.+. +. .+...+. +.
T Consensus 155 ~~~~~-----~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~---~~~lI~DE~y~~~~~~-~~--~~~~~~~-------~~ 216 (368)
T PRK03317 155 AIAEH-----RPDVVFLTSPNNPTGTALPLDDVEAILDAA---PGIVVVDEAYAEFRRS-GT--PSALTLL-------PE 216 (368)
T ss_pred HHhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHHC---CceEEEeCCchhhccc-CC--cCHHHHH-------Hh
Confidence 98753 689999999999999999999999988876 6899999999998662 22 2333332 22
Q ss_pred CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 262 ~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
..++|+++||||+| |++|+|+||++ +++++++.+.+... .++++.+.|.++..++.. .+.+ .+.
T Consensus 217 ~~~~i~~~SfSK~~-g~~GlRiG~~~---~~~~~~~~l~~~~~-~~~~s~~~~~a~~~~l~~-------~~~~----~~~ 280 (368)
T PRK03317 217 YPRLVVSRTMSKAF-AFAGGRLGYLA---AAPAVVDALRLVRL-PYHLSAVTQAAARAALRH-------ADEL----LAS 280 (368)
T ss_pred CCCEEEEEechhhh-ccchhhhhhhh---CCHHHHHHHHhcCC-CCCCCHHHHHHHHHHhhC-------HHHH----HHH
Confidence 23789999999999 89999999999 69999999987765 678899999999888852 1112 233
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
++.++++++.+.+.|++. |+.+..++++|++|.++. ++..+ .+.|.++||.+.++ +.
T Consensus 281 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~---------------~~~~~-~~~l~~~Gv~v~~~---~~--- 337 (368)
T PRK03317 281 VAALRAERDRVVAWLREL-GLRVAPSDANFVLFGRFA---------------DRHAV-WQGLLDRGVLIRDV---GI--- 337 (368)
T ss_pred HHHHHHHHHHHHHHHHHC-CCEeCCCCCcEEEEeccC---------------CHHHH-HHHHHHCCEEEEeC---CC---
Confidence 456788888999999887 888888999999884432 13344 45566789999874 22
Q ss_pred CcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 422 IFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 422 ~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++||+++.. ++++.+++.|+++++.
T Consensus 338 ~~~iRi~~~~~-~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 338 PGWLRVTIGTP-EENDAFLAALAEVLAT 364 (368)
T ss_pred CCeEEEecCCH-HHHHHHHHHHHHHHHH
Confidence 24899999854 6889999999887754
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=331.17 Aligned_cols=327 Identities=14% Similarity=0.152 Sum_probs=247.6
Q ss_pred HHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCC
Q 041151 27 YLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDS 106 (463)
Q Consensus 27 ~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~ 106 (463)
...++++.-+++++++|+.|.|++ +. |+.+++++.+.+.. ...|++.
T Consensus 9 ~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----p~~~~~a~~~~~~~----~~~y~~~ 55 (356)
T PRK08056 9 REAATVLGISPDQLLDFSANINPL------------------------GM-----PVSLKRAIIDNLDC----AERYPDV 55 (356)
T ss_pred HHHHHHhCCChhhEEEeccccCCC------------------------CC-----CHHHHHHHHHHHHh----cccCcCc
Confidence 333444554567799999997775 33 88899998877654 2468764
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE-c-----------cCcee---c---C
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL-L-----------FHTTW---K---R 168 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv-p-----------~g~~~---~---~ 168 (463)
++.+||++||++++ +++++|++|+|+++++..++.++ .+|+.|+. | .|+++ + .
T Consensus 56 -~~~~lr~~ia~~~~------~~~~~i~it~Ga~~~l~~~~~~l--~~g~viv~~P~y~~~~~~~~~~g~~~~~v~~~~~ 126 (356)
T PRK08056 56 -EYRHLHQALARHHQ------VPASWILAGNGETESIFAVVSGL--KPRRAMIVTPGFAEYRRALQQVGCEIRRYSLREA 126 (356)
T ss_pred -cHHHHHHHHHHHhC------cChhhEEECCCHHHHHHHHHHHh--CCCCEEEeCCCcHHHHHHHHHcCCeEEEEecccc
Confidence 68999999999985 78999999999999999999986 57876555 3 56665 2 2
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
+++.+|. + +++.+.+ ++|+|+++|||||||.+++.+++++|+++|++++++||+||+|.++.+ ++..+.+.
T Consensus 127 ~~~~~~~-~-~~~~~~~------~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~ 197 (356)
T PRK08056 127 DGWQLTD-A-ILEALTP------DLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIP-DETGFIPQ 197 (356)
T ss_pred cCCCccH-H-HHHhccC------CCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCC-cchHHHHH
Confidence 3455553 3 4444544 799999999999999999999999999999999999999999999876 22222121
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
+ ...+++|+++||||+| |++|+|+||++. .++++++.+.+... .++++.+.|.++..++.+
T Consensus 198 ------~----~~~~~~i~~~S~SK~~-~~~G~RiG~~v~--~~~~~~~~l~~~~~-~~~~~~~~~~~a~~~l~~----- 258 (356)
T PRK08056 198 ------L----ADNPHLWVLRSLTKFY-AIPGLRLGYLVN--SDDAAVARMRRQQM-PWSINAFAALAGEVILQD----- 258 (356)
T ss_pred ------h----ccCCCEEEEEechhhc-cCcchhheeeec--CCHHHHHHHHHhCC-CCchhHHHHHHHHHHhCC-----
Confidence 1 2234789999999999 999999999984 35678888877654 567788999999888752
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCe
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGI 408 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI 408 (463)
..+.+++++.++++++.+.+.|++++|+.+.++ +++|+|+++. . ++.+++.. |.++||
T Consensus 259 ------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~~~~~~~~--~------------~~~~~~~~-l~~~gI 316 (356)
T PRK08056 259 ------RAYQQATWQWLAEEGARFYQALCALPLLTVWPG-RANYLFLRCE--R------------PDIDLQRA-LLTQRI 316 (356)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-CCcEEEEEcC--C------------ChHHHHHH-HHHCCe
Confidence 122345678899999999999998888876655 5788896554 1 13455544 557899
Q ss_pred EeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 409 STVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 409 ~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
.|++|+.|.. .+.+++||+++.. ++.+.+++.|++++
T Consensus 317 ~v~~~~~f~~-~~~~~iRis~~~~-~~~~~l~~~l~~~~ 353 (356)
T PRK08056 317 LIRSCANYPG-LDSRYYRVAIRSA-AENERLLAALRNVL 353 (356)
T ss_pred EEEECCCCCC-CCCCEEEEEEcCH-HHHHHHHHHHHHHH
Confidence 9999999953 2345999999854 78888888887764
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=331.18 Aligned_cols=319 Identities=19% Similarity=0.223 Sum_probs=246.5
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
.+.++|+|+.|.|.+ .. |+.+.+++.+... ....|++..| .+||++
T Consensus 34 ~~~~~i~l~~~~~~~------------------------~~-----~~~~~~al~~~~~----~~~~Y~~~~g-~~lr~~ 79 (371)
T PRK05166 34 GVPRIAKLGSNENPL------------------------GP-----SPAVRRAFADIAE----LLRLYPDPQG-RALREA 79 (371)
T ss_pred CCcceEEcCCCCCCC------------------------CC-----CHHHHHHHHHHHH----HhhcCCCCcH-HHHHHH
Confidence 455799999997764 22 6777777765433 2467999888 499999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c-CCCcccChHHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K-RQQIGVLIIND 178 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~-~~~~~~d~~~~ 178 (463)
+|++++ +++++|++|+|+++++..++.+++ ++||.|+++ .|+++ + ..++++|+ ++
T Consensus 80 ia~~~~------~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~ 151 (371)
T PRK05166 80 IAARTG------VPADRIILGNGSEDLIAVICRAVL-RPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLGFDL-DA 151 (371)
T ss_pred HHHHhC------cCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCCCCH-HH
Confidence 999985 678999999999999999999998 899999986 56666 2 33578999 99
Q ss_pred HHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCC
Q 041151 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLP 258 (463)
Q Consensus 179 l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
+++.+++ ++++|+++|||||||.+++.+++++|+++|++ +++||+||+|.++.++ + ...+......+
T Consensus 152 l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~-~-~~~~~~~~~~~---- 218 (371)
T PRK05166 152 LCAAVAR------APRMLMFSNPSNPVGSWLTADQLARVLDATPP-ETLIVVDEAYAEYAAG-D-DYPSALTLLKA---- 218 (371)
T ss_pred HHHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCC-c-CcccHHHHHhh----
Confidence 9998876 78999999999999999999999999999875 8899999999998762 2 22343333221
Q ss_pred CCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 041151 259 FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRES 338 (463)
Q Consensus 259 ~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 338 (463)
..+++|+++||||.| |+||+|+||+++ +++++++.+.+... .++++.+.|.++.+++.+ ..+.
T Consensus 219 --~~~~vi~i~SfSK~~-~l~GlRiG~~i~--~~~~l~~~~~~~~~-~~~~~~~~q~~~~~~l~~-----------~~~~ 281 (371)
T PRK05166 219 --RGLPWIVLRTFSKAY-GLAGLRVGYGLV--SDPELVGLLDRVRT-PFNVNGAAQAAALAALDD-----------EEHL 281 (371)
T ss_pred --cCCCEEEEeechHhh-hcchhheeeeec--CCHHHHHHHHHhcc-CCCCCHHHHHHHHHHhcC-----------HHHH
Confidence 224799999999999 999999999875 57888888887665 567899999888887742 1234
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 339 KGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 339 ~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
++.++.++++++.+.+.|++. |+.+. |.+++|+|+++. . ++.++... |.++||.+.||..++.
T Consensus 282 ~~~~~~~~~~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~~--~------------~~~~l~~~-l~~~gi~v~p~~~~~~ 344 (371)
T PRK05166 282 AKGVALALAERERLKKELAEM-GYRIA-PSRANFLFFDAR--R------------PASAVAEA-LLRQGVIVKPWKQPGF 344 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-cCeeC-CCcCCEEEEeCC--C------------CHHHHHHH-HHHCCeEEecCCCCCC
Confidence 456778899999999999988 77754 556788896643 1 24555544 5567999999986543
Q ss_pred CCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 419 ~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
.+++||+++.. ++.+++++.|+.++
T Consensus 345 ---~~~iRi~~~~~-~~~~~l~~~l~~i~ 369 (371)
T PRK05166 345 ---ETFIRVSIGSP-EENDHFVAALDKVL 369 (371)
T ss_pred ---CCeEEEEcCCH-HHHHHHHHHHHHHh
Confidence 45899999954 45666666665543
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=331.07 Aligned_cols=323 Identities=16% Similarity=0.149 Sum_probs=252.4
Q ss_pred HHhcccc-eeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHH
Q 041151 34 QKEGKKI-IFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGV 112 (463)
Q Consensus 34 ~~~~~~~-i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~l 112 (463)
...|.++ ++|+.|+|++ +. |+.+++++.+.+.. ..+|+++ +.++|
T Consensus 27 ~~~g~~~~~~l~~~~~~~------------------------~~-----~~~~~~a~~~~~~~----~~~Y~~~-~~~~L 72 (369)
T PRK08153 27 RQRGRPFRARIGANESGF------------------------GP-----SPSVIAAMREAAAE----IWKYGDP-ENHDL 72 (369)
T ss_pred HhcCCcceeEecCCCCCC------------------------CC-----CHHHHHHHHHHHHH----hhcCCCC-ccHHH
Confidence 3467765 6999999885 44 88899988876643 3578876 47899
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cCCCcccChH
Q 041151 113 RKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KRQQIGVLII 176 (463)
Q Consensus 113 r~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~~~~~~d~~ 176 (463)
|++||++++ +++++|++|+|+++++..++.+++ +|||.|+++ .|+++ +.+...+|+
T Consensus 73 r~~ia~~~~------~~~~~I~it~G~~~~l~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~~~~- 144 (369)
T PRK08153 73 RHALAAHHG------VAPENIMVGEGIDGLLGLIVRLYV-EPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDREDL- 144 (369)
T ss_pred HHHHHHHhC------CCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCCCCCH-
Confidence 999999985 788999999999999999999998 899999996 45555 444557888
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.+++.+... ++++|++++||||||.++|.+++.+|+++|++ +++||+||+|.++.++ + ...++..
T Consensus 145 ~~l~~~~~~~-----~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~-~-~~~~~~~------ 210 (369)
T PRK08153 145 DALLDAARRE-----NAPLVYLANPDNPMGSWHPAADIVAFIEALPE-TTLLVLDEAYCETAPA-G-AAPPIDT------ 210 (369)
T ss_pred HHHHHHhccc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCc-c-cchhhhh------
Confidence 9988776542 78999999999999999999999999999874 9999999999998762 2 1222221
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
...++|+++||||+| |+||+|+||++ +++++++.+.+... .++++.+.|.++..++++ ..
T Consensus 211 ----~~~~~i~~~SfSK~~-g~~GlRiG~~v---~~~~~~~~l~~~~~-~~~~s~~~q~~~~~~l~~-----------~~ 270 (369)
T PRK08153 211 ----DDPNVIRMRTFSKAY-GLAGARVGYAI---GAPGTIKAFDKVRN-HFGMNRIAQAAALAALKD-----------QA 270 (369)
T ss_pred ----cCCCEEEEecchHhc-cCcchheeeee---cCHHHHHHHHHhhc-CCCCCHHHHHHHHHHhcC-----------HH
Confidence 124799999999999 99999999999 68999999988776 577899999999999852 12
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee-CCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV-PGSG 415 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~-pg~~ 415 (463)
+.++.++.++++++.+.+.|++. |+.+. |.+++|+|+++..... .... +.+.|.++||.++ |+..
T Consensus 271 ~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~~~-----------~a~~-l~~~l~~~Gi~v~~p~~~ 336 (369)
T PRK08153 271 YLAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRDGA-----------FARA-VLDGLIARDIFVRMPGVA 336 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCCcc-----------cHHH-HHHHHHHCCeEEeeCCCC
Confidence 24456778899999999999887 77644 6788889966531110 1233 3444567899995 5542
Q ss_pred CCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 416 f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
. +.+++||+++. +++++.+++.|++++.+.+
T Consensus 337 ~----~~~~iRis~~~-~~~~~~~~~al~~~~~~~~ 367 (369)
T PRK08153 337 P----LDRCIRVSCGP-DEELDLFAEALPEALEAAR 367 (369)
T ss_pred C----CCCeEEEecCC-HHHHHHHHHHHHHHHHHhh
Confidence 1 33589999994 5899999999999887554
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=332.32 Aligned_cols=337 Identities=16% Similarity=0.200 Sum_probs=252.8
Q ss_pred hhhhhhhccch-hhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 11 MNENVKKVQYA-VRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 11 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
+.+.+.++.+. +.+.+...+++....++++|+|+.|.+.+ +. |+.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~n~~p~------------------------~~-----~~~v~~a~ 74 (380)
T PLN03026 24 IRKHILQLAPYQPILPFEVLSAQLGRKPEDIVKLDANENPY------------------------GP-----PPEVLEAL 74 (380)
T ss_pred hhHHhhcCCCCCCCCChHHHHHHhCCCccceEEccCCCCCC------------------------CC-----CHHHHHHH
Confidence 33445454443 33344444444444467899999997664 33 66777776
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+. . ....|+++ +..+||++++++++ +++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 75 ~~~-~----~~~~Yp~~-~~~~lr~~ia~~~~------~~~~~I~~t~Ga~~~i~~~~~~~~-~~gd~Vlv~~P~y~~y~ 141 (380)
T PLN03026 75 GNM-K----FPYVYPDP-ESRRLRAALAEDSG------LESENILVGCGADELIDLLMRCVL-DPGDKIIDCPPTFGMYV 141 (380)
T ss_pred Hhh-H----hhccCCCC-CHHHHHHHHHHHhC------cChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCChHHHH
Confidence 542 1 23468765 68999999999986 789999999999999999999998 899999996
Q ss_pred -----cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|+++ ...++++|+ +.|++.+... ++++|++|+||||||.+++.+++.+|++.+ ++||+||
T Consensus 142 ~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~~~~~-----~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~----~~vi~De 211 (380)
T PLN03026 142 FDAAVNGAEVIKVPRTPDFSLDV-PRIVEAVETH-----KPKLLFLTSPNNPDGSIISDDDLLKILELP----ILVVLDE 211 (380)
T ss_pred HHHHHcCCEEEEeecCCCCCcCH-HHHHHHHhcc-----CCcEEEEeCCCCCCCCCCCHHHHHHHHhcC----CEEEEEC
Confidence 66666 234688999 9999988432 799999999999999999999999988753 8999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChH
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVP 312 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 312 (463)
+|.++.+ .+ +..... ...+++|+++||||.| |++|+|+||++ +++++++.+.+... .++.+.+
T Consensus 212 aY~~~~~-~~----~~~~~~-------~~~~~viv~~SfSK~~-glaGlRiGy~~---~~~~~i~~l~~~~~-~~~~~~~ 274 (380)
T PLN03026 212 AYIEFST-QE----SRMKWV-------KKYDNLIVLRTFSKRA-GLAGLRVGYGA---FPLSIIEYLWRAKQ-PYNVSVA 274 (380)
T ss_pred cchhhcC-Cc----chHHHH-------HhCCCEEEEecchHhh-cCccccceeee---cCHHHHHHHHHhcC-CCCCCHH
Confidence 9998765 22 111211 2235799999999999 99999999999 69999999988776 5778999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 313 AQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 313 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
.|.++.++|++ ..+.++.++.++++++.+.+.|++++++.+ .|.+++|+|+++. .+
T Consensus 275 ~q~aa~~aL~~-----------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~--~~---------- 330 (380)
T PLN03026 275 AEVAACAALSN-----------PKYLEDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVT--SG---------- 330 (380)
T ss_pred HHHHHHHHhhC-----------HHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECC--CC----------
Confidence 99999998852 123445788899999999999998844544 5677888896543 21
Q ss_pred CChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.++.++... |.++||.|+++..++ ..+++|||++.. ++++.+++.|++
T Consensus 331 ~~~~~~~~~-l~~~gI~v~~~~~~~---~~~~lRis~~~~-~~~~~l~~al~~ 378 (380)
T PLN03026 331 RDAKKLKED-LAKMGVMVRHYNSKE---LKGYIRVSVGKP-EHTDALMEALKQ 378 (380)
T ss_pred CCHHHHHHH-HHHCCeEEEECCCCC---CCCEEEEecCCH-HHHHHHHHHHHH
Confidence 124555544 558899999987643 345899999954 577777777754
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=329.21 Aligned_cols=313 Identities=17% Similarity=0.205 Sum_probs=249.5
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
+.++++|+.|.|++ +. |+.+++++.+++.. .....|++ .|.++||+++
T Consensus 25 ~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~~~~~~~--~~~~~Y~~-~~~~~lr~~i 72 (356)
T PRK04870 25 ATGMVKLDAMENPY------------------------RL-----PAELRAELGERLAE--VALNRYPD-PRAAALKAAL 72 (356)
T ss_pred CCCceeCcCCCCCC------------------------CC-----CHHHHHHHHHHhhc--cccccCCC-CCHHHHHHHH
Confidence 45799999998875 44 88999999887764 24578987 5789999999
Q ss_pred HHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccChHHH
Q 041151 117 AEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLIIND 178 (463)
Q Consensus 117 a~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~ 178 (463)
|+|++ +.+ ++|++|+|+++++..++.+++ ++||+|+++ .|+++ ..+++++|+ +.
T Consensus 73 a~~~~------~~~~~~I~~t~G~~~~i~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~-~~ 144 (356)
T PRK04870 73 RAAMG------VPAGADVLLGNGSDELIQLLALACA-KPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDL-PA 144 (356)
T ss_pred HHHhC------cCCCCcEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCH-HH
Confidence 99985 444 589999999999999999998 899999997 67766 234578999 99
Q ss_pred HHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCC
Q 041151 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLP 258 (463)
Q Consensus 179 l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
+++.+.+. ++++|++++||||||.+++.+++++|+++| +.++|+||+|..+.+ . ...+ .+
T Consensus 145 l~~~~~~~-----~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~-~--~~~~--~~------- 204 (356)
T PRK04870 145 MLAAIAEH-----RPALVFLAYPNNPTGNLFDDADVERIIEAA---PGLVVVDEAYQPFAG-D--SWLP--RL------- 204 (356)
T ss_pred HHHHhhcC-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHHC---CCEEEEECCchhhcC-c--chHH--HH-------
Confidence 99998753 789999999999999999999999999988 678999999998643 1 1111 11
Q ss_pred CCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 041151 259 FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRES 338 (463)
Q Consensus 259 ~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 338 (463)
...+++|+++|||| + ++||+|+||++ +++++++.+.+... .++++.+.|.++..+++. ..+.
T Consensus 205 -~~~~~vi~~~S~SK-~-~~~GlRiG~~i---~~~~~i~~~~~~~~-~~~~~~~~q~~a~~~l~~-----------~~~~ 266 (356)
T PRK04870 205 -ARFPNLLVMRTVSK-L-GLAGLRLGYLA---GHPAWIAELDKVRP-PYNVNVLTQATALFALEH-----------VDVL 266 (356)
T ss_pred -hhCCCEEEEecchh-h-hhHHHhhhhhh---CCHHHHHHHHHccC-CCcCCHHHHHHHHHHHhC-----------HHHH
Confidence 23347999999999 8 89999999999 68999999887765 567888999988888742 1224
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 339 KGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 339 ~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
++.++.++++++.+.+.|++++|+.+. |.+++|+|++++ . +..+ ...|+++||.|++|..|+.
T Consensus 267 ~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~--~-------------~~~~-~~~l~~~gI~v~~~~~f~~ 329 (356)
T PRK04870 267 DAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP--D-------------AAAV-FDGLKTRGVLVKNLSGMHP 329 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--C-------------HHHH-HHHHHHCCEEEEECCCCCC
Confidence 456778899999999999988888764 556678886543 1 3343 4667889999999999864
Q ss_pred CCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 419 ~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
...+++||+++.. +++++++++|+++
T Consensus 330 -~~~~~iRis~~~~-~~~~~l~~al~~~ 355 (356)
T PRK04870 330 -LLANCLRVTVGTP-EENAQFLAALKAA 355 (356)
T ss_pred -CCCCeEEEeCCCH-HHHHHHHHHHHHh
Confidence 2456999999954 7888888888765
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=327.21 Aligned_cols=343 Identities=20% Similarity=0.201 Sum_probs=265.4
Q ss_pred hhhhhhhccchhh-hhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 11 MNENVKKVQYAVR-GELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 11 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
+++++.+++++.. +.+...+++. .++++++|+.|.|.. +. |+.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~------------------------~~-----~~~~~~a~ 54 (367)
T PRK02731 6 PNPGILDIAPYVPGKPIEELVREY--GIADIIKLASNENPL------------------------GP-----SPKAIEAI 54 (367)
T ss_pred chhhhcccCCcCCCCCHHHHHHhc--CCCceEEecCCCCCC------------------------CC-----CHHHHHHH
Confidence 4456666666532 3344444444 567799999998764 22 67788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.. ...|++.. ..+||+++|++++ +++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 55 ~~~~~~----~~~y~~~~-~~~lr~~ia~~~~------~~~~~i~~t~G~~~~l~~~~~~l~-~~gd~vl~~~p~y~~~~ 122 (367)
T PRK02731 55 RAAADE----LHRYPDGS-GFELKAALAEKFG------VDPERIILGNGSDEILELLARAYL-GPGDEVIYSEHGFAVYP 122 (367)
T ss_pred HHHHHh----hcCCCCCc-HHHHHHHHHHHhC------cCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEecCCHHHHH
Confidence 877653 36788765 4799999999985 678999999999999999999997 899999997
Q ss_pred -----cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 162 -----FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 162 -----~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
.|.++ +.+++++|+ +.+++.+++ ++++|++++||||||.+++.+++.+|++.|+ ++++||+||+
T Consensus 123 ~~~~~~g~~~~~~~~~~~~~~~-~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~ 194 (367)
T PRK02731 123 IAAQAVGAKPVEVPAKDYGHDL-DAMLAAVTP------RTRLVFIANPNNPTGTYLPAEEVERFLAGVP-PDVLVVLDEA 194 (367)
T ss_pred HHHHHcCCeEEEecccCCCCCH-HHHHHHhCC------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-CCcEEEEECc
Confidence 56666 556789999 999998875 7999999999999999999999999999875 6999999999
Q ss_pred ccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHH
Q 041151 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPA 313 (463)
Q Consensus 234 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 313 (463)
|..+.+. +....++ ... +...++|+++||||.| |++|+|+||++ +++++++.+.+... .++.+.+.
T Consensus 195 y~~~~~~-~~~~~~~-~~~-------~~~~~~i~~~S~SK~~-g~~G~RiG~l~---~~~~~~~~l~~~~~-~~~~~~~~ 260 (367)
T PRK02731 195 YAEYVRR-KDYEDGL-ELV-------AKFPNVVVTRTFSKAY-GLAGLRVGYGI---APPEIIDALNRVRQ-PFNVNSLA 260 (367)
T ss_pred HHHhccC-cCcccHH-HHH-------hhcCCEEEEeeehHhh-cCcccceeeee---CCHHHHHHHHHccC-CCCCCHHH
Confidence 9988773 2222233 221 2234789999999999 89999999999 68999999987765 46678899
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCC
Q 041151 314 QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV 393 (463)
Q Consensus 314 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 393 (463)
|.++..++++ ..+.++.++.++++++.+.+.|++. |+.+.+ .+++|+|+++ +.. .
T Consensus 261 ~~~a~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~g~~~~i~~--~~~----------~ 315 (367)
T PRK02731 261 LAAAVAALDD-----------DAFVEKSRALNAEGMAWLTEFLAEL-GLEYIP-SVGNFILVDF--DDG----------K 315 (367)
T ss_pred HHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCccCC-CCceEEEEEC--CCC----------C
Confidence 9999998852 1234457778899999999999988 887764 5568889665 221 1
Q ss_pred ChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 394 PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 394 ~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
++.+++ ..|.++||.++++..|+. .+++||+++. .++++++++.|+++++
T Consensus 316 ~~~~~~-~~L~~~gI~v~~~~~~~~---~~~iRis~~~-~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 316 DAAEAY-QALLKRGVIVRPVAGYGL---PNALRITIGT-EEENRRFLAALKEFLA 365 (367)
T ss_pred CHHHHH-HHHHHCCEEEEeCCCCCC---CCeEEEecCC-HHHHHHHHHHHHHHHh
Confidence 245554 446678999999998863 2489999985 4789999999988763
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=325.16 Aligned_cols=315 Identities=18% Similarity=0.168 Sum_probs=234.0
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
...++++|+.|.+.+ +. |+.+++++.+.+.. ...|+++. ..+||++
T Consensus 20 ~~~~~i~l~~~~n~~------------------------~~-----~~~~~~a~~~~~~~----~~~Y~~~~-~~~Lr~a 65 (360)
T PRK07392 20 PPDAILDFSASINPL------------------------GP-----PESVIAAIQSALSA----LRHYPDPD-YRELRLA 65 (360)
T ss_pred CcccEEEeCCcCCCC------------------------CC-----CHHHHHHHHHHHHH----hhcCCCcC-HHHHHHH
Confidence 344689999996654 33 78888888776653 46798764 6899999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC---CCc---cc
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR---QQI---GV 173 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~---~~~---~~ 173 (463)
||+|++ +++++|++|+|++++|..++.++. +||.|+++ .|+++ +. ..+ ..
T Consensus 66 ia~~~~------v~~~~I~it~G~~~~i~~~~~~l~--~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~ 137 (360)
T PRK07392 66 LAQHHQ------LPPEWILPGNGAAELLTWAGRELA--QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTL 137 (360)
T ss_pred HHHHhC------cChhhEEECCCHHHHHHHHHHHhC--CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCccccc
Confidence 999994 889999999999999999999874 68889986 67666 22 222 23
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 253 (463)
++ +.+++.. . ++++++++|||||||.+++.+++.++ ++++++ +|+||+|.++.++ +. ..++....
T Consensus 138 ~~-~~~~~~~-~------~~~~~~l~nP~NPTG~~~~~~~l~~l---~~~~~~-~IiDE~y~~~~~~-~~-~~s~~~~~- 202 (360)
T PRK07392 138 RL-QTLPPQL-T------PNDGLLLNNPHNPTGKLWSREAILPL---LEQFAL-VVVDEAFMDFLPP-DA-EQSLIPCL- 202 (360)
T ss_pred CH-HHHHHhc-c------CCCEEEEeCCCCCCCCCcCHHHHHHH---HHHCCE-EEEECchhhhccC-cc-ccchHHHh-
Confidence 45 5555432 2 68999999999999999997776655 457775 6669999998773 32 23433221
Q ss_pred hcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHH
Q 041151 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 254 ~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
+...++|+++||||+| |+||+|+||++ +++++++.+.+... .++++.+.|.++..++++ +.
T Consensus 203 ------~~~~~vi~i~S~SK~~-~l~GlRiG~~v---~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~-----~~--- 263 (360)
T PRK07392 203 ------AEYPNLIILRSLTKFY-SLPGLRLGYAI---AHPDRLQRWQQWRD-PWPVNGLAAAAAIAALAD-----RD--- 263 (360)
T ss_pred ------hcCCCEEEEEechhhh-cCCchheeeee---CCHHHHHHHHhhCC-CCCCCHHHHHHHHHHhcc-----HH---
Confidence 3345799999999999 99999999999 58889988877664 578899999999999863 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg 413 (463)
+ .+..++.++++++.+.+.|++++|+.+.+ .+++|+|++++ . ++.++...+++++||.+.||
T Consensus 264 ~---~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-~~~~fl~~~~~--~------------~~~~l~~~ll~~~gv~v~pg 325 (360)
T PRK07392 264 F---QQQTWAWLPPAREALFQGLASLPGLTPLP-SAANFLLVQSQ--G------------SALQLQEKLLQQHRILIRDC 325 (360)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHhCCCcEECC-CCCCEEEEEcC--C------------CHHHHHHHHHhhCCEEEEeC
Confidence 2 22345568888999999999888887654 77899996553 1 24566667778899999999
Q ss_pred CCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 414 ~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
..|+. .+.+++||+++.. ++.+++.+.|+++
T Consensus 326 ~~f~~-~~~~~iRi~~~~~-~~~~~l~~al~~~ 356 (360)
T PRK07392 326 LSFPE-LGDRYFRVAVRTE-AENQRLLEALAAI 356 (360)
T ss_pred CCCCC-CCCCEEEEEeCCH-HHHHHHHHHHHHH
Confidence 99975 2456999999964 2334444444443
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=317.79 Aligned_cols=310 Identities=16% Similarity=0.163 Sum_probs=240.9
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
+++++||+.|.+++ +. |+.+++++.+.+.. ...|+++.|..+||+++
T Consensus 21 ~~~~~~l~~~~~~~------------------------~~-----~~~~~~~~~~~~~~----~~~Y~~~~g~~~lr~ai 67 (349)
T PRK07908 21 GPGLLDFAVNVRHD------------------------TP-----PEWLRERLAARLGD----LAAYPSTEDERRARAAV 67 (349)
T ss_pred CCCeEEecCCCCCC------------------------CC-----CHHHHHHHHHHhhH----hhcCCCccchHHHHHHH
Confidence 56799999998774 33 88889998887754 35799989999999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE-c-----------cCcee---c-CCCcccChHHHHH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL-L-----------FHTTW---K-RQQIGVLIINDLQ 180 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv-p-----------~g~~~---~-~~~~~~d~~~~l~ 180 (463)
+++++ +++++|++|+|+++++..++. + ++|+.++. | .|+++ + +.++++|+ +.+
T Consensus 68 a~~~~------~~~~~I~it~Ga~~al~~~~~-l--~~~~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~-~~l- 136 (349)
T PRK07908 68 AARHG------RTPDEVLLLAGAAEGFALLAR-L--RPRRAAVVHPSFTEPEAALRAAGIPVHRVVLDPPFRLDP-AAV- 136 (349)
T ss_pred HHHhC------cChhhEEECCCHHHHHHHHHh-c--CCCeEEEeCCCChHHHHHHHHcCCEEEeeccCcccCcCh-hHh-
Confidence 99985 789999999999999999988 4 57665443 2 66666 2 22378888 754
Q ss_pred HHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCC
Q 041151 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFS 260 (463)
Q Consensus 181 ~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
.+ ++++|+++|||||||.++|.+++.+ +|+ ++.++|+||+|.++.+ + . ..++... +
T Consensus 137 ---~~------~~~~i~l~np~NPTG~~~~~~~l~~---l~~-~~~~iIvDe~y~~~~~-~-~-~~~l~~~--------~ 192 (349)
T PRK07908 137 ---PD------DADLVVIGNPTNPTSVLHPAEQLLA---LRR-PGRILVVDEAFADAVP-G-E-PESLAGD--------D 192 (349)
T ss_pred ---cc------CCCEEEEcCCCCCCCCCcCHHHHHH---HHh-cCCEEEEECcchhhcc-C-C-ccccccc--------c
Confidence 23 6899999999999999999876655 454 4778889999998744 2 2 2343321 2
Q ss_pred CCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 041151 261 KEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG 340 (463)
Q Consensus 261 ~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (463)
.+++|+++||||.| |++|+|+||++ +++++++.+.+... .+..+.+.|.++..++... ..++.++
T Consensus 193 -~~~~i~i~S~SK~~-~l~GlRiG~~~---~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~---------~~~~~~~ 257 (349)
T PRK07908 193 -LPGVLVLRSLTKTW-SLAGLRVGYAL---GAPDVLARLTRGRA-HWPVGTLQLEAIAACCAPR---------AVAEAAA 257 (349)
T ss_pred -CCCEEEEeeccccc-CCccceeeeee---cCHHHHHHHHhcCC-CCCccHHHHHHHHHHhccc---------chHHHHH
Confidence 23689999999999 99999999999 58999999987765 4667778888887776521 1234556
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC
Q 041151 341 ILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420 (463)
Q Consensus 341 ~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~ 420 (463)
+++.++++++.+.+.|+++ |+.+..|.+++|+|++++ . .+.+...|+++||.+.||..|+..
T Consensus 258 ~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~--~--------------~~~~~~~l~~~gI~v~~g~~f~~~- 319 (349)
T PRK07908 258 DAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVP--D--------------AELLRKRLRERGIAVRRGDTFPGL- 319 (349)
T ss_pred HHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECC--c--------------HHHHHHHHHhCCEEEEECCCCCCC-
Confidence 7889999999999999988 888888899999996554 1 234566788999999999999642
Q ss_pred CCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 421 GIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 421 ~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+.+++|||++ ++++++++++.|++++.
T Consensus 320 ~~~~vRis~~-~~~~~~~l~~al~~~~~ 346 (349)
T PRK07908 320 DPDYLRLAVR-PRAEVPVLVQALAEILK 346 (349)
T ss_pred CCCeEEEEeC-CCccHHHHHHHHHHHHh
Confidence 3569999997 45799999999987653
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=322.01 Aligned_cols=311 Identities=17% Similarity=0.222 Sum_probs=241.6
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
++++|+|+.|.|.+ +. |+.+.+++.+.+.. ....|++. |.++||++|
T Consensus 23 ~~~~i~l~~~~~~~------------------------~~-----~~~~~~a~~~~~~~---~~~~y~~~-~~~~lr~ai 69 (353)
T PRK05387 23 LAKLIKLNTNENPY------------------------PP-----SPKVLEAIRAALGD---DLRLYPDP-NADALRQAI 69 (353)
T ss_pred ccceeeccCCCCCC------------------------CC-----CHHHHHHHHHHhhh---hhhcCCCC-cHHHHHHHH
Confidence 35789999999885 33 77888888876664 34678765 669999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccChHHHH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLIINDL 179 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l 179 (463)
|++++ +++++|++|+|++++|..++.+++ +|||.|++| .|+++ ..+++++|+ +.+
T Consensus 70 a~~~~------~~~~~I~it~G~~~al~~~~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l 141 (353)
T PRK05387 70 AAYYG------LDPEQVFVGNGSDEVLAHAFLAFF-NHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDV-EDY 141 (353)
T ss_pred HHHhC------CCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCH-HHH
Confidence 99985 789999999999999999999998 999999997 66665 234678999 988
Q ss_pred HHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCC
Q 041151 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259 (463)
Q Consensus 180 ~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++ ..++|+++|||||||.+++.+++.+|+++++ +++||+||+|.++. +....++.
T Consensus 142 ~~----------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~--~~~livDe~y~~~~---~~~~~~~~---------- 196 (353)
T PRK05387 142 LR----------PNGGIIFPNPNAPTGIALPLAEIERILAANP--DSVVVIDEAYVDFG---GESAIPLI---------- 196 (353)
T ss_pred Hh----------cCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC--CcEEEEeCcccccC---CcchHHHH----------
Confidence 63 4688999999999999999999999998654 89999999998742 22211221
Q ss_pred CCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH
Q 041151 260 SKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337 (463)
Q Consensus 260 ~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 337 (463)
+...++|+++||||.| |++|+|+||++ +++++++.+.+... ..++++.+.|.++..++.+ ..+
T Consensus 197 ~~~~~~i~~~S~SK~~-~~~GlR~G~~~---~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~-----------~~~ 261 (353)
T PRK05387 197 DRYPNLLVVQTFSKSR-SLAGLRVGFAI---GHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIED-----------EAY 261 (353)
T ss_pred hhCCCEEEEEehhHhh-cchhhhceeee---cCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcC-----------HHH
Confidence 2234789999999999 99999999999 68999999988764 2467889999999888752 122
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 338 SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
.++.++++.++++.+.+.|+++ |+.+. |.+++|+|++++ .. ++.+++. .|.++||.+++ |+
T Consensus 262 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~--~~-----------~~~~~~~-~l~~~gi~v~~---~~ 322 (353)
T PRK05387 262 FEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHP--SH-----------DAAELAA-KLRERGIIVRH---FN 322 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECC--CC-----------CHHHHHH-HHHHCCEEEEE---CC
Confidence 3356778899999999999988 77764 556778885543 11 2445554 45788999985 33
Q ss_pred CCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 418 ~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.+...+++||+++. .+++++++++|++++.
T Consensus 323 ~~~~~~~iRis~~~-~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 323 KPRIDQFLRITIGT-DEEMEALVDALKEILA 352 (353)
T ss_pred CCCCCCeEEEEeCC-HHHHHHHHHHHHHHhh
Confidence 22234689999984 4899999999988764
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=316.48 Aligned_cols=311 Identities=16% Similarity=0.218 Sum_probs=239.5
Q ss_pred cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHH
Q 041151 39 KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE 118 (463)
Q Consensus 39 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 118 (463)
..++|+.|.|++ +. |+.+++++.+.+.. .....|++. +..+||+++|+
T Consensus 23 ~~~~l~~~~~~~------------------------~~-----p~~~~~a~~~~~~~--~~~~~y~~~-~~~~lr~~ia~ 70 (351)
T PRK14807 23 YKYKMDANETPF------------------------EL-----PEEVIKNIQEIVKS--SQVNIYPDP-TAEKLREELAR 70 (351)
T ss_pred ceeEccCCCCCC------------------------CC-----CHHHHHHHHHHhhc--CcccCCCCc-cHHHHHHHHHH
Confidence 358899998885 44 88999998877754 245678765 46899999999
Q ss_pred HHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccChHHHHHH
Q 041151 119 FIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLIINDLQQ 181 (463)
Q Consensus 119 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~ 181 (463)
+++ +++++|++|+|+++++..++.+++ ++||+|+++ .|.++ ....+++|+ +.+++
T Consensus 71 ~~~------~~~~~i~it~G~~~~l~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~ 142 (351)
T PRK14807 71 YCS------VVPTNIFVGNGSDEIIHLIMLAFI-NKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDV-GSFIK 142 (351)
T ss_pred HhC------CCcccEEEecCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHH
Confidence 985 788999999999999999999997 899999997 56555 234578999 99999
Q ss_pred HHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC
Q 041151 182 SVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261 (463)
Q Consensus 182 ~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
.+++. ++|+|++++||||||.+++.+++.+|++ +++.++|+||+|.++ + + ....+. + +.
T Consensus 143 ~~~~~-----~~k~v~l~~p~NPtG~~~~~~~l~~l~~---~~~~~~ivDe~y~~~-~-~-~~~~~~--~--------~~ 201 (351)
T PRK14807 143 VIEKY-----QPKLVFLCNPNNPTGSVIEREDIIKIIE---KSRGIVVVDEAYFEF-Y-G-NTIVDV--I--------NE 201 (351)
T ss_pred Hhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHH---hCCCEEEEeCcchhh-c-c-cchHHH--h--------hh
Confidence 98753 7999999999999999999888877765 556789999999875 3 2 222121 1 22
Q ss_pred CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 262 ~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
.+++|+++||||+| |+||+|+||++ +++++++.+.+.+. .++++.+.|.++..++++ .+.++.
T Consensus 202 ~~~vi~~~S~SK~~-~~~GlRiG~~v---~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~------------~~~~~~ 264 (351)
T PRK14807 202 FENLIVLRTLSKAF-GLAGLRVGYAV---ANENILKYLNLVKS-PYNINSLSQVIALKVLRT------------GVLKER 264 (351)
T ss_pred CCCEEEEecchHhc-ccchhceeeee---cCHHHHHHHHHccC-CCCcCHHHHHHHHHHHhH------------HHHHHH
Confidence 34799999999999 99999999999 69999999987766 466789999999998851 122334
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
.+.++++++.+.+.|++++|+.+.+ .+++|+|+++. . +.. +.+.|.++||.|+++..+.. .
T Consensus 265 ~~~~~~~r~~l~~~l~~~~g~~~~~-~~~~~~~i~~~--~-------------~~~-~~~~l~~~gV~v~~~~~~~~--~ 325 (351)
T PRK14807 265 VNYILNERERLIKELSKIPGIKVYP-SKTNFILVKFK--D-------------ADY-VYQGLLERGILVRDFSKVEG--L 325 (351)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEECc-CCccEEEEEcC--C-------------HHH-HHHHHHHCCEEEEECCCCCC--C
Confidence 5567888889999998878887754 45678886553 1 233 45566678999998654322 2
Q ss_pred CcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 422 IFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 422 ~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
.+++||+++.. ++.+++++.|++++
T Consensus 326 ~~~iRis~~~~-~~~~~l~~~l~~~~ 350 (351)
T PRK14807 326 EGALRITVSSC-EANDYLINGLKELL 350 (351)
T ss_pred CCeEEEEcCCH-HHHHHHHHHHHHhh
Confidence 45899999954 66778888877653
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=311.75 Aligned_cols=301 Identities=19% Similarity=0.258 Sum_probs=244.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+.+++.+.+.. .+.||++ ...+|+++++++++. +++++|++++|+.+.|..++++++ .+||.|+++
T Consensus 37 ~~~~~~~~~~~~~~----~~rYPd~-~~~~l~~a~a~~~~~-----~~~~~V~~gnGsde~i~~l~~~~~-~~gd~vl~~ 105 (356)
T COG0079 37 PPKVIEAIRAALDK----LNRYPDP-DYRELRAALAEYYGV-----VDPENVLVGNGSDELIELLVRAFV-EPGDTVLIP 105 (356)
T ss_pred CHHHHHHHHHHHHh----hccCCCC-cHHHHHHHHHHHhCC-----CCcceEEEcCChHHHHHHHHHHhh-cCCCEEEEc
Confidence 78888888777663 5789987 578999999999862 577899999999999999999998 999999996
Q ss_pred -------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 -------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 -------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
.|+++ +...|.+|+ +.+.+.+.+ ++++|++||||||||..++.++++++++.+.+ +
T Consensus 106 ~Ptf~~Y~~~a~~~g~~~~~v~~~~~~~d~-~~~~~~~~~------~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~-~ 177 (356)
T COG0079 106 EPTFSMYEIAAQLAGAEVVKVPLKEFRLDL-DAILAAIRD------KTKLVFLCNPNNPTGTLLPREELRALLEALPE-G 177 (356)
T ss_pred CCChHHHHHHHHhcCCeEEEecccccccCH-HHHHHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-C
Confidence 77665 333399999 999999987 79999999999999999999999999999988 9
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhh
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI 305 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~ 305 (463)
.+||+||+|.+|.- .+...+. ....|+|+++||||.| |++|+|+||++ +++++++.+.+++.
T Consensus 178 ~~vVvDEAY~eF~~------~~~~~l~-------~~~~nlivlRTfSKa~-gLAGlRlGy~i---a~~~~i~~l~~vr~- 239 (356)
T COG0079 178 GLVVIDEAYIEFSP------ESSLELL-------KYPPNLIVLRTFSKAF-GLAGLRVGYAI---ANPELIAALNKVRP- 239 (356)
T ss_pred cEEEEeCchhhcCC------chhhhhc-------cCCCCEEEEEecHHhh-hcchhceeecc---CCHHHHHHHHHhcC-
Confidence 99999999999632 2222221 2234799999999999 99999999988 79999999999998
Q ss_pred cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCceeEEeeeccCChhhH
Q 041151 306 ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFTEGAMYSFPQIRLPPKAI 384 (463)
Q Consensus 306 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~g~~~~~~~~~~~~~~~ 384 (463)
.|..+.+++.++.+++.+ .+++++.+....+.++.+.+.|+.++ +. +.++.+ .|++++++ ..
T Consensus 240 p~~v~~~a~~aa~aal~~-----------~~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~a-NFvlv~~~--~~-- 302 (356)
T COG0079 240 PFNVSSPALAAAIAALRD-----------ADYLEESVERIREERERLYAALKALG-LFGVFPSQA-NFVLVRVP--DA-- 302 (356)
T ss_pred CCCCCHHHHHHHHHHccc-----------HHHHHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCC-cEEEEECC--Cc--
Confidence 899999999999999863 24455678889999999999999984 55 566555 45554333 21
Q ss_pred HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
. ...+.+.|.++||.|+.+...+ ...+++||+++.. ++.++++++|++++++
T Consensus 303 ---------~-~~~l~~~L~~~giivR~~~~~~--~~~~~lRitvgt~-een~~ll~AL~~~~~~ 354 (356)
T COG0079 303 ---------E-AAALAEALLKKGILVRDCSSVG--LLPGYLRITVGTP-EENDRLLAALREVLKG 354 (356)
T ss_pred ---------c-HHHHHHHHHHCCEEEEeCCCCC--CCCCeEEEEeCCH-HHHHHHHHHHHHHHhc
Confidence 1 2335566778899999986622 2445999999987 4559999999888754
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=319.97 Aligned_cols=288 Identities=13% Similarity=0.200 Sum_probs=225.9
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEEc-------------cCce
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVLL-------------FHTT 165 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlvp-------------~g~~ 165 (463)
...|+++. ..+||+++|++++ +++++|++|+|+++++..++.+++ ++| +.|+++ .|.+
T Consensus 53 ~~~Y~~~~-~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~~~~~-~~g~~~vlv~~p~y~~~~~~~~~~g~~ 124 (364)
T PRK04781 53 TRRYPDPQ-PPGLRSALAALYG------CAPEQLLIGRGSDEAIDLLVRALC-VPGRDAVLVTPPVFGMYAVCARLQNAP 124 (364)
T ss_pred hccCCCCC-HHHHHHHHHHHhC------cChHHEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHHHHHHHHcCCE
Confidence 46788765 6899999999985 788999999999999999999997 888 788886 5666
Q ss_pred e---c----CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccc
Q 041151 166 W---K----RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238 (463)
Q Consensus 166 ~---~----~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~ 238 (463)
+ + .+++.+|+ +++++.+... ++++|+++|||||||.+++.+++++|+++|+ ++++||+||+|.++.
T Consensus 125 ~~~v~~~~~~~~~~~d~-~~l~~~~~~~-----~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~-~~~~iI~Deay~~f~ 197 (364)
T PRK04781 125 LVEVPLVDGADGFHADV-PAIVAAALAS-----NAKLVFLCSPSNPAGSAIALDQIERALQALQ-GKALVVVDEAYGEFS 197 (364)
T ss_pred EEEEecCCCccCCCcCH-HHHHHHHhcc-----CCeEEEEcCCCCCCCCCcCHHHHHHHHHhCC-CCcEEEEeCcchhhc
Confidence 5 2 12466788 8887665432 7999999999999999999999999999986 479999999999976
Q ss_pred cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHH
Q 041151 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMG 318 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~ 318 (463)
+ . . +...+. +..+++|+++||||+| |+||+|+||++ +++++++.+.+... .++.+.+.|.++.
T Consensus 198 ~-~-~---~~~~~~-------~~~~~vi~~~SfSK~~-gl~GlRvGy~v---~~~~l~~~l~~~~~-~~~~~~~~~~~a~ 260 (364)
T PRK04781 198 D-V-P---SAVGLL-------ARYDNLAVLRTLSKAH-ALAAARIGSLI---ANAELIAVLRRCQA-PYPVPTPCAALAE 260 (364)
T ss_pred C-C-c---chHHHH-------hhCCCEEEEecChhhc-ccccceeeeee---CCHHHHHHHHhccC-CCCCCHHHHHHHH
Confidence 5 1 1 222221 2335799999999999 99999999999 69999999998876 5778999999998
Q ss_pred HhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHH
Q 041151 319 LMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFY 398 (463)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (463)
.+|.+. .+.. ..+..+.++++++.+.+.|+.++|+....|.+++|+|++++ . ..+
T Consensus 261 ~~l~~~-----~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~--~-------------~~~- 315 (364)
T PRK04781 261 QALSAP-----ALAV----TARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD--D-------------AEA- 315 (364)
T ss_pred HHHhcc-----cHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--C-------------HHH-
Confidence 888632 1212 22344568889999999999887875455777899996553 1 233
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 399 CLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 399 ~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
+.+.+.++||.|+||..|+. ..+++||+++.. ++++++++.|+++.
T Consensus 316 ~~~~l~~~gI~v~~~~~~~~--~~~~~Ris~~~~-~~~~~l~~al~~~~ 361 (364)
T PRK04781 316 AFQALLAAGVVVRDQRAAPR--LSDALRITLGTP-EQNDRVLAALQRTQ 361 (364)
T ss_pred HHHHHHHCCeEEeeCCCCCC--CCCeEEEeCCCH-HHHHHHHHHHHHHH
Confidence 45667889999999987753 245899999965 67888888887653
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=317.53 Aligned_cols=309 Identities=18% Similarity=0.155 Sum_probs=240.8
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
+++++|+.|.|.. +. |+.+++++.+.+.. ...|++.. ..+||++|+
T Consensus 43 ~~~i~l~~~~~~~------------------------~~-----~~~~~~a~~~~~~~----~~~Y~~~~-~~~Lr~aia 88 (370)
T PRK09105 43 EGAVFLNANECPL------------------------GP-----SPAARDAAARSAAL----SGRYDLEL-EDDLRTLFA 88 (370)
T ss_pred CCcEEecCCCCCC------------------------CC-----CHHHHHHHHHHHHH----hcCCCCch-HHHHHHHHH
Confidence 3479999998775 43 88899988877654 24687764 899999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccChHHHHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLIINDLQ 180 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~ 180 (463)
++++ +++++|++|+|+++++..++.+++ ++||.|+++ .|+++ ...++.+|+ +.++
T Consensus 89 ~~~~------v~~e~I~it~Gs~~ai~~~~~~l~-~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~ 160 (370)
T PRK09105 89 AQEG------LPADHVMAYAGSSEPLNYAVLAFT-SPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDV-KAML 160 (370)
T ss_pred HHhC------cChhhEEEcCChHHHHHHHHHHHc-CCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCH-HHHH
Confidence 9875 789999999999999999999998 899999997 66665 234577899 9998
Q ss_pred HHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCC
Q 041151 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFS 260 (463)
Q Consensus 181 ~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
+. .+ ++++|++||||||||.+++.+++++|++.++ ++++||+||+|.++.. . .+...+. +
T Consensus 161 ~~-~~------~~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~~---~--~s~~~~~-------~ 220 (370)
T PRK09105 161 AA-DP------NAGLIYICNPNNPTGTVTPRADIEWLLANKP-AGSVLLVDEAYIHFSD---A--PSVVDLV-------A 220 (370)
T ss_pred hc-CC------CCCEEEEeCCCCCCCcCcCHHHHHHHHHhCC-CCcEEEEECchHHhcc---C--cchHHHH-------h
Confidence 76 33 6899999999999999999999999999764 5999999999987532 1 2333332 2
Q ss_pred CCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 041151 261 KEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG 340 (463)
Q Consensus 261 ~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (463)
...++|+++||||+| |++|+|+||++ +++++++.+.+. . ...++.+.|.++..++.+ ..+.++
T Consensus 221 ~~~~vi~~~SfSK~~-g~~GlRiG~~v---~~~~~i~~l~~~-~-~~~~~~~~~~aa~~~L~~-----------~~~~~~ 283 (370)
T PRK09105 221 QRKDLIVLRTFSKLY-GMAGMRLGLAA---ARPDLLAKLARF-G-HNPLPVPAAAAGLASLRD-----------PKLVPQ 283 (370)
T ss_pred hCCCEEEEecccHhh-cCCccceeeee---cCHHHHHHHHhc-C-CCCcCHHHHHHHHHHHhC-----------HHHHHH
Confidence 234799999999999 99999999999 689999998877 3 455788888888888752 233455
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC
Q 041151 341 ILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420 (463)
Q Consensus 341 ~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~ 420 (463)
.++.++++++.+.+.|++. |+.+.+++++||+ ++++ . ++.++...++ ++||.+ +..|+.
T Consensus 284 ~~~~~~~~r~~l~~~L~~~-g~~~~~~~~~f~~-~~~~--~------------~~~~l~~~L~-~~gI~v--~~~~~~-- 342 (370)
T PRK09105 284 RRAENAAVREDTIAWLKKK-GYKCTPSQANCFM-VDVK--R------------PAKAVADAMA-KQGVFI--GRSWPI-- 342 (370)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCcCCCCCcEEE-EeCC--C------------CHHHHHHHHH-HCCcEE--ecCCCC--
Confidence 6778999999999999997 8888888898875 4443 1 2455555555 569998 444532
Q ss_pred CCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 421 GIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 421 ~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
..+++||+++. +++++++++.|++++
T Consensus 343 ~~~~~Ris~~~-~~~~~~l~~al~~~~ 368 (370)
T PRK09105 343 WPNWVRVTVGS-EEEMAAFRSAFAKVM 368 (370)
T ss_pred CCCeEEEEcCC-HHHHHHHHHHHHHHh
Confidence 34599999995 467888888887664
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=300.07 Aligned_cols=338 Identities=18% Similarity=0.198 Sum_probs=267.4
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCc
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHT 164 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~ 164 (463)
...+|++..|.++|...+.++.+.....+ ...-+|++|+|.+.++..+++.++ ++||.|+++ .|+
T Consensus 92 ~alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~-N~gd~vlie~~ty~~AL~s~~a~gv 170 (472)
T KOG0634|consen 92 RALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI-NRGDHVLIEEYTYPSALQSMEALGV 170 (472)
T ss_pred hhhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh-cCCCceEEecccchHHHHhccccCc
Confidence 45899999999999999999654222223 333499999999999999999998 999999997 666
Q ss_pred ee---cCCCcccChHHHHHHHHHHHHhc---CCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 165 TW---KRQQIGVLIINDLQQSVAQARSK---GITVRAMVII-NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 165 ~~---~~~~~~~d~~~~l~~~l~~~~~~---~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
++ ..+..++++ |.|++.+.+.... .++++++|.. +-+||||.++|.+.+++|.++|++||++||+||.|..+
T Consensus 171 ~~ipv~md~~Gi~p-E~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~L 249 (472)
T KOG0634|consen 171 KIIPVKMDQDGIDP-ESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFL 249 (472)
T ss_pred eEEeccccCCCCCH-HHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCcccee
Confidence 55 677899999 9999998765332 2457776655 77999999999999999999999999999999999999
Q ss_pred ccCC-------CCCccchHHH----HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h
Q 041151 238 IYQD-------ERPFVSSKKV----LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I 305 (463)
Q Consensus 238 ~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~ 305 (463)
.|+. +.+..+...+ .+.+ +.-+.++|||...||||.++ ||+|+||+. +++-+++++-.... .
T Consensus 250 q~~~y~~~~~~~~p~~s~~~f~k~l~~sf-lslDtdGrVIr~dSFSKiia--PGlRlG~it---~~~~~l~ril~~ae~~ 323 (472)
T KOG0634|consen 250 QMNTYNPSLELESPAHSSSMFLKSLVPSF-LSLDTDGRVIRNDSFSKIIA--PGLRLGWIT---GNSLFLKRILDLAEVA 323 (472)
T ss_pred eccccCCCccccCccccHHHHHHhhcCCc-ccccccccEEeccchhhhhc--CcceeEEee---cCHHHHHHHhhhccee
Confidence 8842 2222231122 2222 11177889999999999984 999999999 78888888877776 6
Q ss_pred cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC--cccccCCceeEEeeeccCChh
Q 041151 306 ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CRN--VVCNFTEGAMYSFPQIRLPPK 382 (463)
Q Consensus 306 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~pg--~~~~~~~g~~~~~~~~~~~~~ 382 (463)
+.+++.+.|.++.++++. +.-+-+++|..+++..|..|++++..+|.+ +|+ +.+++|.+|+|+|+.++.+.
T Consensus 324 t~~pSg~sq~iv~a~l~~-----wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~~- 397 (472)
T KOG0634|consen 324 TSGPSGFSQGIVYAMLKR-----WGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYIN- 397 (472)
T ss_pred ecCcccccHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEecccc-
Confidence 778999999999999863 333556788889999999999999999987 564 67789999999997665221
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCc----EEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIF----HLRTTIL-PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~----~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
..+...+++-.+.....+.+.||.+.+|+.|...+... ++|++++ .+.|+++++++|+..+++++...
T Consensus 398 ---~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~e~l~~g~~rf~~~ike~f~~ 470 (472)
T KOG0634|consen 398 ---FDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEPEKLDEGIERFGSVIKEHFIT 470 (472)
T ss_pred ---cccccchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCHHHHHHHHHHHHHHHHHHhhc
Confidence 11112222346677788999999999999997653332 9999999 88899999999999999987653
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=314.57 Aligned_cols=283 Identities=14% Similarity=0.154 Sum_probs=215.4
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE-c-----------cCcee-
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL-L-----------FHTTW- 166 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv-p-----------~g~~~- 166 (463)
...|+++. ..+||+++|++++ +++++|++|+|++++|..++. ++ +||+.|++ | .|+++
T Consensus 34 ~~~Yp~~~-~~~lr~~ia~~~~------~~~~~I~it~Gs~~~l~~~~~-~~-~~~~vv~~~P~y~~y~~~~~~~G~~v~ 104 (332)
T PRK06425 34 ISIYPEIS-YTDIEDQIKIYTQ------GLKIKVLIGPGLTHFIYRLLS-YI-NVGNIIIVEPNFNEYKGYAFTHGIRIS 104 (332)
T ss_pred cccCcCcC-HHHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHH-Hh-CCCcEEEeCCChHHHHHHHHHcCCeEE
Confidence 35687664 7899999999997 789999999999999999997 45 78875555 2 67776
Q ss_pred --cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCC
Q 041151 167 --KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 --~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~ 244 (463)
+.+.++.|. +.+++ . ++|+|++||||||||.++|.+++++|+++|++++++||+||+|.++.+ ++.
T Consensus 105 ~vp~~~~~~~~-~~l~~---~------~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~-~~~- 172 (332)
T PRK06425 105 ALPFNLINNNP-EILNN---Y------NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVP-NRA- 172 (332)
T ss_pred EEeCCcccCcH-HHHhh---c------CCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccc-ccc-
Confidence 434455665 65542 2 789999999999999999999999999999999999999999999876 221
Q ss_pred ccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCC
Q 041151 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPL 324 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~ 324 (463)
.+...+. ...+++|+++||||+| |+||+|+||++ +++++++.+.+... .+..+.+.+.++...
T Consensus 173 -~~~~~~~-------~~~~~vi~~~SfSK~~-~l~GlRiGy~v---~~~~li~~l~~~~~-~~~~~~~~~~~l~~~---- 235 (332)
T PRK06425 173 -EEDVLLN-------RSYGNVIIGRSLTKIL-GIPSLRIGYIA---TDDYNMKISRKITE-PWSVCDPAIDFIRSI---- 235 (332)
T ss_pred -hhHHHHh-------ccCCCEEEEeecHHhc-CCchhhheeee---cCHHHHHHHHHcCC-CCccCHHHHHHHHHh----
Confidence 2333332 2335899999999999 99999999999 69999999988665 344454443332211
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHH
Q 041151 325 KPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLE 404 (463)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 404 (463)
. ...+.++.++.|+++++.+.+.|++. |+.+..+.++.|+|+.++ . +.++... |.
T Consensus 236 -----~---~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~--~-------------~~~~~~~-l~ 290 (332)
T PRK06425 236 -----D---LDYVAKHSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP--D-------------AHDFYSY-LL 290 (332)
T ss_pred -----h---hHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC--C-------------HHHHHHH-HH
Confidence 1 12234457888999999999999998 787765456677885543 1 4455545 45
Q ss_pred hcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 405 ATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 405 ~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
++||.|+||+.|+.. +.+++||+++.. +++++++++|++++
T Consensus 291 ~~gi~v~~~~~f~~~-~~~~iRis~~~~-~~~~~l~~al~~~~ 331 (332)
T PRK06425 291 KNGILVRLLDDYECL-GEQYIRIAIRRR-SFNIKLVNALRNFL 331 (332)
T ss_pred HCCeEEEECCCCCCC-CCCEEEEEeCCH-HHHHHHHHHHHHHh
Confidence 679999999999742 456999999975 68999999998764
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=311.31 Aligned_cols=311 Identities=18% Similarity=0.250 Sum_probs=247.2
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
.++|||+.|+++. +. |+.+++++.+++.. ...|+++.+ .++|+++|
T Consensus 19 ~~~i~l~~~~~~~------------------------~~-----~~~~~~a~~~~~~~----~~~y~~~~~-~~lr~~ia 64 (346)
T TIGR01141 19 KEVIKLNSNENPF------------------------GP-----PPKAKEALRAEADK----LHRYPDPDP-AELKQALA 64 (346)
T ss_pred CceEEccCCCCCC------------------------CC-----CHHHHHHHHHhHHH----hhcCCCCCH-HHHHHHHH
Confidence 4699999999875 44 88899999887643 367888776 89999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccChHHHHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLIINDLQ 180 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~ 180 (463)
++++ +++++|++|+|+++++..++.+++ ++||+|+++ .|.++ ....+.+|+ +.++
T Consensus 65 ~~~~------~~~~~i~~~~G~~~~l~~~~~~l~-~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~l~ 136 (346)
T TIGR01141 65 DYYG------VDPEQILLGNGSDEIIELLIRAFL-EPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDL-EDIL 136 (346)
T ss_pred HHhC------cChHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCH-HHHH
Confidence 9996 778999999999999999999997 899999997 56665 233466899 9999
Q ss_pred HHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCC
Q 041151 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFS 260 (463)
Q Consensus 181 ~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
+.+.+ ++++|++++||||||.+++.+++.++++.++ +++++|+||+|..+.+ .+ . ..... .
T Consensus 137 ~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~-~~-~---~~~~~-------~ 197 (346)
T TIGR01141 137 VAIDD------KPKLVFLCSPNNPTGNLLSRSDIEAVLERTP-EDALVVVDEAYGEFSG-EP-S---TLPLL-------A 197 (346)
T ss_pred HhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEECchhhhcC-Cc-c---HHHHH-------h
Confidence 98755 7999999999999999999999999999887 7999999999997654 21 1 11111 1
Q ss_pred CCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 041151 261 KEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG 340 (463)
Q Consensus 261 ~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (463)
...++|+++|+||+| |++|+|+||++ .++++++.+..... .++.+.+.|.++..+++. ..+.++
T Consensus 198 ~~~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-----------~~~~~~ 261 (346)
T TIGR01141 198 EYPNLIVLRTLSKAF-GLAGLRIGYAI---ANAEIIDALNKVRA-PFNLSRLAQAAAIAALRD-----------DDFIEK 261 (346)
T ss_pred hCCCEEEEehhhHhh-hchhhhceeee---cCHHHHHHHHhccC-CCCCCHHHHHHHHHHhCC-----------HHHHHH
Confidence 123689999999999 88999999999 58899999887765 567789999999888852 113456
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC
Q 041151 341 ILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420 (463)
Q Consensus 341 ~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~ 420 (463)
.++.++++++.+.+.|++++|+.+. |.+++|+|+.++ . ++.++. +.|.++||.+.||..|+..
T Consensus 262 ~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~--~------------~~~~~~-~~L~~~gI~v~~g~~f~~~- 324 (346)
T TIGR01141 262 TVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFP--R------------DADALF-EALLEKGIIVRDLNSYPGL- 324 (346)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecC--C------------CHHHHH-HHHHHCCeEEEeCCCcCCC-
Confidence 7888999999999999988888854 456788886544 1 144554 4566789999999988643
Q ss_pred CCcEEEEEecCCcCcHHHHHHHHH
Q 041151 421 GIFHLRTTILPAEEDMPAIMESFK 444 (463)
Q Consensus 421 ~~~~lRis~~~~~e~i~~~~~~l~ 444 (463)
.+++|+|++ ++++++++++.|+
T Consensus 325 -~~~iRls~~-~~~~i~~~~~~l~ 346 (346)
T TIGR01141 325 -PNCLRITVG-TREENDRFLAALR 346 (346)
T ss_pred -CCeEEEecC-CHHHHHHHHHHhC
Confidence 568999998 5678888887763
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=311.13 Aligned_cols=336 Identities=18% Similarity=0.256 Sum_probs=250.5
Q ss_pred hhhhhhhccchhhhh-HHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 11 MNENVKKVQYAVRGE-LYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
+-+++..+++..... +....+++..+++++|+|+.|+++. +. ++.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~ 56 (361)
T PRK00950 6 IRAEVKEIKPYVPGKSKEEIAREYGIDPESIIKLGSNENPL------------------------GP-----SPKAVEAI 56 (361)
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHhCCCccceEEccCCCCCC------------------------CC-----CHHHHHHH
Confidence 334555555543322 3444444444556899999998774 32 77788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE-cCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL-TDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+.. ...|+++.+ +++|+++|++++ +++++|++ |+|+++++..++.+++ ++||.|+++
T Consensus 57 ~~~~~~----~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~~~~Ga~~~i~~~~~~~~-~~gd~vlv~~p~y~~~ 124 (361)
T PRK00950 57 EKELSK----IHRYPEPDA-PELREALSKYTG------VPVENIIVGGDGMDEVIDTLMRTFI-DPGDEVIIPTPTFSYY 124 (361)
T ss_pred HHHHHh----hcCCCCCCH-HHHHHHHHHHhC------CCHHHEEEeCCCHHHHHHHHHHHhc-CCCCEEEEcCCChHHH
Confidence 776654 356877654 899999999985 78899999 7899999999999997 899999986
Q ss_pred ------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|.++ ...++++|+ +.+++.+.+ ++++|++++||||||.+++.+++.+|+ ++++++||+|
T Consensus 125 ~~~~~~~g~~~~~~~~~~~~~~~~-~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~---~~~~~~li~D 194 (361)
T PRK00950 125 EISAKAHGAKPVYAKREEDFSLDV-DSVLNAITE------KTKVIFLCTPNNPTGNLIPEEDIRKIL---ESTDALVFVD 194 (361)
T ss_pred HHHHHHcCCEEEEeecCCCCCcCH-HHHHHHhcc------CCCEEEEeCCCCCCCCCcCHHHHHHHH---HHCCcEEEEE
Confidence 56665 344578999 999998876 789999999999999999987766654 5789999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCCh
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNV 311 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~ 311 (463)
|+|.++.. .. ...+. ...+++++++||||++ |+||+|+||++ +++++++.+.+... .++.+.
T Consensus 195 e~y~~~~~---~~---~~~~~-------~~~~~vi~~~S~SK~~-g~~GlRiG~~~---~~~~~~~~~~~~~~-~~~~~~ 256 (361)
T PRK00950 195 EAYVEFAE---YD---YTPLA-------LEYDNLIIGRTFSKVF-GLAGLRIGYGF---VPEWLIDYYMRAKT-PFSLTR 256 (361)
T ss_pred CchhhhCc---cc---hHHHH-------HhcCCEEEEEeehHhh-cCchhhcchhc---CCHHHHHHHHHhcC-CCCCCH
Confidence 99987631 11 22222 2224789999999999 99999999999 68999999888776 456788
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcC
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
+.|.++..++.+ ..+.++.++.++++++.+.+.|. +.+ .+.+++|+|++++ .
T Consensus 257 ~~~~~a~~~l~~-----------~~~~~~~~~~~~~~r~~l~~~l~----~~~-~~~~~~~i~~~~~--~---------- 308 (361)
T PRK00950 257 LSQAAAIAALSD-----------KEYIEKSIEHGIKSREYLYNELP----FKV-YPSEANFVLVDVT--P---------- 308 (361)
T ss_pred HHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHhhcC----eeE-CCCcceEEEEECC--C----------
Confidence 999988888752 12234456778888888888775 343 3567789996662 1
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
.++.+++.. |.++||.++||..|+. .+.+++|||++. .+++++++++|++++
T Consensus 309 -~~~~~~~~~-l~~~gv~v~~~~~f~~-~~~~~lRis~~~-~~~~~~l~~~L~~il 360 (361)
T PRK00950 309 -MTAKEFCEE-LLKRGVIVRDCTSFRG-LGDYYIRVSIGT-FEENERFLEILKEIV 360 (361)
T ss_pred -CCHHHHHHH-HHHCCEEEeeCCccCC-CCCCeEEEECCC-HHHHHHHHHHHHHHh
Confidence 124555555 5567999999998864 345699999994 468999999998765
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=313.44 Aligned_cols=283 Identities=17% Similarity=0.264 Sum_probs=222.5
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEEc-------------cCc
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVLL-------------FHT 164 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlvp-------------~g~ 164 (463)
....|++.. ...|+++++++++ +++++|++|+|++++|..++.+++ ++| |.|+++ .|+
T Consensus 50 ~~~~Yp~~~-~~~l~~~~a~~~g------~~~~~I~~~~Gs~e~i~~~~~~~~-~~g~~~vli~~P~y~~y~~~~~~~G~ 121 (351)
T PRK01688 50 TLNRYPECQ-PKAVIENYAAYAG------VKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGV 121 (351)
T ss_pred ccccCCCCC-hHHHHHHHHHHhC------CCHHHEEEcCCHHHHHHHHHHHhc-CCCCCEEEEcCCCHHHHHHHHHHcCC
Confidence 346788765 4799999999986 789999999999999999999997 887 888886 666
Q ss_pred ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 165 TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 165 ~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
++ ...++++|+ +.+++++ + ++++|++||||||||.+++.+++++|++.|++ +++||+||+|.++..
T Consensus 122 ~~~~v~~~~~~~~d~-~~l~~~~-~------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~- 191 (351)
T PRK01688 122 EIRTVPTLDNWQLDL-PAIADNL-D------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRG-KAIVVADEAYIEFCP- 191 (351)
T ss_pred EEEEeecCCCCCCCH-HHHHHhc-c------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC-CcEEEEECchhhcCC-
Confidence 66 234589999 9999877 3 68999999999999999999999999999986 688999999998643
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHh
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLM 320 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 320 (463)
. .+...+. ....++|+++||||+| |++|+|+||++ +++++++.+.+... .++++.+.|.++..+
T Consensus 192 -~---~s~~~~~-------~~~~n~iv~rSfSK~~-glaGlRiGy~i---~~~~~i~~l~~~~~-~~~v~~~~~~~a~~~ 255 (351)
T PRK01688 192 -Q---ASLAGWL-------AEYPHLVILRTLSKAF-ALAGLRCGFTL---ANEEVINLLLKVIA-PYPLSTPVADIAAQA 255 (351)
T ss_pred -C---CChHHHH-------hhCCCEEEEecchHhh-cCHHHHHhHHh---CCHHHHHHHHhccC-CCCCCHHHHHHHHHH
Confidence 1 1333332 2234799999999999 99999999999 69999999988776 567888888888888
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHH
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (463)
|.+. ..++.++.++.++++++.+.+.|++++|+....|.++.|+|+++. . +.++.
T Consensus 256 L~~~---------~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~--~-------------~~~l~- 310 (351)
T PRK01688 256 LSPQ---------GIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT--A-------------SSAVF- 310 (351)
T ss_pred Hhcc---------hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--C-------------HHHHH-
Confidence 7521 123344566778889999999999887776455667778886543 1 34444
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHH
Q 041151 401 RLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESF 443 (463)
Q Consensus 401 ~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l 443 (463)
+.|.++||.|+++..|.. ..+++|||++.. +++++++++|
T Consensus 311 ~~L~~~gi~vr~~~~~~~--~~~~iRis~~~~-~e~~~l~~al 350 (351)
T PRK01688 311 KSLWDQGIILRDQNKQPG--LSNCLRITIGTR-EECQRVIDAL 350 (351)
T ss_pred HHHHHCCeEEEECCCcCC--CCCeEEEeCCCH-HHHHHHHHhh
Confidence 445678999998776532 234899999954 8888888876
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=275.22 Aligned_cols=360 Identities=18% Similarity=0.227 Sum_probs=273.0
Q ss_pred chhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH-HHhhhcC-
Q 041151 20 YAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK-HYLSLTS- 97 (463)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~-~~~~~~~- 97 (463)
.+-|..++....+--+++. .|+|+.|+|.. .|. -...++-+. +.+.+..
T Consensus 13 ~sGi~~lMdDl~d~Lrt~g-~imLggGNPa~-----------------------iPe-----m~~~f~~~~aemla~~~~ 63 (417)
T COG3977 13 HSGITQLMDDLNDGLRTPG-AIMLGGGNPAR-----------------------IPE-----MDDYFQDLLAEMLASGKA 63 (417)
T ss_pred hhhHHHHHHHHHhhccCCC-ceeeCCCCccc-----------------------Chh-----HHHHHHHHHHHHHhcchH
Confidence 4556777777666555544 89999999984 122 122222222 2222210
Q ss_pred -CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cCCC--CEEEEc----------c
Q 041151 98 -GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RGEG--DGVVLL----------F 162 (463)
Q Consensus 98 -~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~~g--d~Vlvp----------~ 162 (463)
...-.|..++|...|.++++++++++||+.+++.+|.+|+|++.+.+.++..+. +..| ..|+.| .
T Consensus 64 ~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~ 143 (417)
T COG3977 64 TEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADA 143 (417)
T ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhcccccc
Confidence 145789999999999999999999999999999999999999999999999885 1223 468887 1
Q ss_pred Ccee-------------c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 163 HTTW-------------K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 163 g~~~-------------~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
|... + ...+.+|+ ++|+-. + ++.+|.++.|.||||.+++.+|+.+|.++|++||+.
T Consensus 144 ~l~~d~fVs~kP~iel~~~g~FKY~vDF-~~l~i~--e------~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giP 214 (417)
T COG3977 144 GLEEDLFVSAKPNIELLPAGQFKYHVDF-EHLHIG--E------STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIP 214 (417)
T ss_pred ccCccceeeccCCcccccccceeeccCH-HHcccc--c------ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCc
Confidence 1111 2 22456788 777543 2 789999999999999999999999999999999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hc
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IA 306 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~ 306 (463)
+|+|.+|..- | ++- -+....+ --..|+|.|.|+|| + |+||.|+|.++ +++++++++..+.. .+
T Consensus 215 liIDnAYg~P-F-P~i---ifsd~~~------~w~~NiilC~SLSK-~-GLPG~R~GIiI---ane~viqaitnmn~iis 278 (417)
T COG3977 215 LIIDNAYGVP-F-PGI---IFSDATP------LWNENIILCMSLSK-L-GLPGSRCGIII---ANEKVIQAITNMNGIIS 278 (417)
T ss_pred EEEecccCCC-C-Cce---ecccccc------cCCCCEEEEeehhh-c-CCCCcceeEEE---ccHHHHHHHHhccceee
Confidence 9999999853 2 111 1212111 12348999999999 5 99999999999 79999999999987 78
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC--CcccccCCceeEEeeecc-CChh
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CR--NVVCNFTEGAMYSFPQIR-LPPK 382 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~p--g~~~~~~~g~~~~~~~~~-~~~~ 382 (463)
..+++..+++++.++++.. ..+..+ +-++..|+++.+...+.|++ +| -+.++.|+|..|+|++++ +|-
T Consensus 279 Lap~~~G~Aia~~mie~gd-----l~rlse--qVIrPFY~~~~q~~~~~l~~~lp~~~~~iHkpEGAIFlWLWf~dLPI- 350 (417)
T COG3977 279 LAPGRMGPAIAAEMIESGD-----LLRLSE--QVIRPFYRNRVQTTIAILRRYLPEYRCLIHKPEGAIFLWLWFKDLPI- 350 (417)
T ss_pred ecCCCccHHHHHHHhhcch-----HHHHHH--HhhhHHHHHHHHHHHHHHHHhcCccceeeecCCcceeehhhhccCCC-
Confidence 8999999999999998643 222222 24777888887777777765 34 367789999999999985 553
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC------CCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK------EGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~------~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+...+.+.|++.||++.||..|... +.+.++|+++..++++++.++++|++.+++..++
T Consensus 351 ------------tt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~~ie~Gva~lae~ve~~yq~ 415 (417)
T COG3977 351 ------------TTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPEKIEKGVAILAEEVERAYQE 415 (417)
T ss_pred ------------CHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 2344678899999999999998652 3456899999988899999999999999887764
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=306.45 Aligned_cols=311 Identities=18% Similarity=0.237 Sum_probs=240.4
Q ss_pred cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHH
Q 041151 39 KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE 118 (463)
Q Consensus 39 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 118 (463)
++|+|+.|.|.. +. |+.+.+++.+.+.. ...|++ .|..++|+++|+
T Consensus 23 ~~i~l~~~~~~~------------------------~~-----~~~~~~a~~~~~~~----~~~y~~-~g~~~lr~~ia~ 68 (352)
T PRK03321 23 GAIKLSSNETPF------------------------GP-----LPSVRAAIARAAAG----VNRYPD-MGAVELRAALAE 68 (352)
T ss_pred cceeccCCCCCC------------------------CC-----CHHHHHHHHHHHHh----cCcCCC-CcHHHHHHHHHH
Confidence 589999998874 32 77888888777653 356764 699999999999
Q ss_pred HHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cCC-CcccChHHHHHH
Q 041151 119 FIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KRQ-QIGVLIINDLQQ 181 (463)
Q Consensus 119 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~~-~~~~d~~~~l~~ 181 (463)
+++ +++++|++|+|+++++..++..++ +|||.|++| .|.++ +.+ .+++|+ +.+++
T Consensus 69 ~~~------~~~~~I~~~~G~~~~l~~~~~~~~-~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~l~~ 140 (352)
T PRK03321 69 HLG------VPPEHVAVGCGSVALCQQLVQATA-GPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDL-DAMAA 140 (352)
T ss_pred HhC------cCHHHEEECCCHHHHHHHHHHHhc-CCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCH-HHHHH
Confidence 996 788899999999999999999997 899999997 46655 322 578999 99999
Q ss_pred HHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC
Q 041151 182 SVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261 (463)
Q Consensus 182 ~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
.+++ ++++|++++||||||.+++.+++.++++.+ +++++||+||+|.++.++ +....++... +.
T Consensus 141 ~~~~------~~~~v~l~~p~NPtG~~~~~~~l~~l~~~~-~~~~~ii~De~y~~~~~~-~~~~~~~~~~--------~~ 204 (352)
T PRK03321 141 AITD------RTRLIFVCNPNNPTGTVVTPAELARFLDAV-PADVLVVLDEAYVEYVRD-DDVPDGLELV--------RD 204 (352)
T ss_pred hhcc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEechHHHhccC-cCCCcHHHHH--------hh
Confidence 8876 799999999999999999999999988876 479999999999998873 3322233222 33
Q ss_pred CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 262 ~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
.+++|+++||||.| |+||+|+||++ +++++++.+.+... .++++.+.|.++.+++.. ...+.+ .
T Consensus 205 ~~~vi~~~S~SK~~-g~~GlRiG~~v---~~~~~~~~~~~~~~-~~~~s~~~q~~a~~~l~~-------~~~~~~----~ 268 (352)
T PRK03321 205 HPNVVVLRTFSKAY-GLAGLRVGYAV---GHPEVIAALRKVAV-PFSVNSLAQAAAIASLAA-------EDELLE----R 268 (352)
T ss_pred CCCEEEEecchHHh-hhHHHhhhhhc---CCHHHHHHHHHhcC-CCCCCHHHHHHHHHHhcC-------HHHHHH----H
Confidence 34799999999999 89999999999 68999999987754 678899999988888752 112222 2
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
.+.+.++++.+.+.|++. |+.+.+ .+++|+|+++. . ++.++.. .|+++||.+.+ |+.
T Consensus 269 ~~~~~~~r~~~~~~L~~~-~~~~~~-~~g~~i~i~l~--~------------~~~~~~~-~l~~~gI~v~~---~~~--- 325 (352)
T PRK03321 269 VDAVVAERDRVRAALRAA-GWTVPP-SQANFVWLPLG--E------------RTADFAA-AAAEAGVVVRP---FAG--- 325 (352)
T ss_pred HHHHHHHHHHHHHHHHHC-CCccCC-CCCCEEEEeCC--C------------CHHHHHH-HHHHCCEEEEc---cCC---
Confidence 333455567788889887 776544 45788996553 1 1345544 46789999987 432
Q ss_pred CcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 422 IFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 422 ~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.++||+++.. +++++++++|+++++
T Consensus 326 -~~iRi~~~~~-~~~~~~~~al~~~~~ 350 (352)
T PRK03321 326 -EGVRVTIGAP-EENDAFLRAARAWRA 350 (352)
T ss_pred -CcEEEeeCCH-HHHHHHHHHHHHHhc
Confidence 2599999754 799999999988764
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=301.23 Aligned_cols=301 Identities=18% Similarity=0.243 Sum_probs=225.5
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
.++++++|+.|+|++ +. |+.+++++.+++.. .....|+++ |.++||++
T Consensus 17 ~~~~~i~l~~~~~~~------------------------~~-----p~~~~~~~~~~~~~--~~~~~Y~~~-~~~~Lr~a 64 (335)
T PRK14808 17 EKRDRTYLALNENPF------------------------PF-----PEDLVDEVFRRLNS--DTLRIYYDS-PDEELIEK 64 (335)
T ss_pred CCCceeEecCCCCCC------------------------CC-----CHHHHHHHHHHhhh--hhhhcCCCC-ChHHHHHH
Confidence 456799999999886 44 88999999877654 233457665 89999999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC-CCcccChHHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR-QQIGVLIIND 178 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~-~~~~~d~~~~ 178 (463)
+++|++++ + +++++|++|+|++++|..++.++ |.|+++ .|+++ +. ..+.++. ..
T Consensus 65 ia~~~~~~-~--~~~~~i~it~Ga~~~i~~~~~~~-----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~ 135 (335)
T PRK14808 65 ILSYLDTD-F--LSKNNVSVGNGADEIIYVMMLMF-----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPE-VN 135 (335)
T ss_pred HHHHhCCC-C--CCcceEEEcCCHHHHHHHHHHHh-----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCCh-hH
Confidence 99999754 2 68999999999999999999876 447775 67776 22 2343443 21
Q ss_pred HHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCC
Q 041151 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLP 258 (463)
Q Consensus 179 l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
+ . ++++|+++|||||||.++|.+++++|+ +++++||+||+|.++. + ....+ ....
T Consensus 136 ----~-~------~~~~i~i~nP~NPTG~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~--~-~~~~~---~~~~---- 190 (335)
T PRK14808 136 ----V-G------EGDVVFIPNPNNPTGHVFEREEIERIL----KTGAFVALDEAYYEFH--G-ESYVD---LLKK---- 190 (335)
T ss_pred ----c-c------CCCEEEEeCCCCCCCCCcCHHHHHHHH----hcCCEEEEECchhhhc--C-CchHH---HHHh----
Confidence 1 2 579999999999999999999988886 4799999999999863 1 12212 2122
Q ss_pred CCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 041151 259 FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRES 338 (463)
Q Consensus 259 ~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 338 (463)
..++|+++||||+| |++|+|+||++ +++++++.+.+.+. .++++.+.|.++..+++. ..+.
T Consensus 191 ---~~~vi~~~S~SK~~-~l~GlRvG~~v---~~~~~~~~l~~~~~-~~~~~~~~q~a~~~~l~~-----------~~~~ 251 (335)
T PRK14808 191 ---YENLAVIRTFSKAF-SLAAQRIGYVV---SSEKFIDAYNRVRL-PFNVSYVSQMFAKVALDH-----------REIF 251 (335)
T ss_pred ---CCCEEEEEechhhc-cCcccceEEEE---eCHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhC-----------HHHH
Confidence 23799999999999 99999999999 68899999987774 577889999999888742 1223
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 339 KGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 339 ~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
.+.++.+.++++.+.+.|++. |+.+.+|+|+ |+|+.++ .. +. ..+...|.++||.|+. |.
T Consensus 252 ~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~l~--~~-----------~~-~~~~~~l~~~Gi~V~~---~~- 311 (335)
T PRK14808 252 EERTKFIVEERERMKSALREM-GYRITDSRGN-FVFIFME--KE-----------EK-ERLLEHLRAKNIAVRS---FR- 311 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEECCCCCe-EEEEeCC--Cc-----------cH-HHHHHHHHHCCeEEEE---CC-
Confidence 345567778888999999988 8888777665 5575443 21 13 3345667889999995 32
Q ss_pred CCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 419 ~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
.++||+++.. ++++++++.|+++
T Consensus 312 ----~~~Risi~~~-~~~~~~~~~l~~~ 334 (335)
T PRK14808 312 ----EGVRITIGKR-EENDMILKELEVF 334 (335)
T ss_pred ----CCeEEecCCH-HHHHHHHHHHHhh
Confidence 3799999975 7888888887643
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=304.45 Aligned_cols=280 Identities=15% Similarity=0.250 Sum_probs=217.3
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEEc-------------cCce
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVLL-------------FHTT 165 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlvp-------------~g~~ 165 (463)
...|++. +..+||+++|++++ +++++|++|+|++++|..++.+++ ++| |.|+++ .|++
T Consensus 54 ~~~Yp~~-~~~~Lr~aia~~~~------~~~~~I~it~Gs~~~i~~~~~~~~-~~g~d~vlv~~P~y~~y~~~~~~~g~~ 125 (354)
T PRK04635 54 LNRYPEC-QPPELINAYSAYAG------VAPEQILTSRGADEAIELLIRAFC-EPGQDSIACFGPTYGMYAISAETFNVG 125 (354)
T ss_pred hccCCCC-CHHHHHHHHHHHhC------cCHHHEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHHHHHHHHcCCE
Confidence 4679876 47999999999985 889999999999999999999997 888 899986 5666
Q ss_pred e---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 166 W---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 166 ~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
+ + ..++.+|. +.++. + + ++|+|++||||||||.+++.+++.+|+++|+ +++||+||+|.++..
T Consensus 126 v~~v~~~~~~~~~~-~~l~~-~-~------~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~--~~~vivDeay~~~~~-- 192 (354)
T PRK04635 126 VKALPLTADYQLPL-DYIEQ-L-D------GAKLVFICNPNNPTGTVIDRADIEQLIEMTP--DAIVVVDEAYIEFCP-- 192 (354)
T ss_pred EEEEecCCCCCCCH-HHHHh-c-c------CCCEEEEeCCCCCCCccCCHHHHHHHHHhCC--CcEEEEeCchHhhcc--
Confidence 5 2 23578888 88863 3 3 7999999999999999999999999999876 499999999998643
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhc
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMV 321 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l 321 (463)
. .+...+. ....++|+++||||+| |++|+|+||++ +++++++.+.+... .++.+.+.|.++..++
T Consensus 193 ~---~s~~~~~-------~~~~~~iv~~S~SK~~-~l~GlRlG~~i---~~~~~~~~l~~~~~-~~~~~~~~~~~a~~~l 257 (354)
T PRK04635 193 E---YSVADLL-------ASYPNLVVLRTLSKAF-ALAGARCGFTL---ANEELIEILMRVIA-PYPVPLPVSEIATQAL 257 (354)
T ss_pred C---cchHHHH-------hhCCCEEEEechHHHh-hhhHHHHhhhh---CCHHHHHHHHhhcC-CCCCCHHHHHHHHHHH
Confidence 1 1333322 2234789999999999 99999999999 69999999887655 5677888888888887
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHH
Q 041151 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLR 401 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (463)
.+.. .++.++.++.++++++.+.+.|++++++.+.+++| .|+|++++ . ..+ +.+
T Consensus 258 ~~~~---------~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g-~f~~~~~~--~-------------~~~-~~~ 311 (354)
T PRK04635 258 SEAG---------LARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNG-NYVLAKFD--D-------------VDA-VFK 311 (354)
T ss_pred hccc---------HHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCC-cEEEEECC--C-------------HHH-HHH
Confidence 5311 12344566778999999999999986687777765 57775443 1 233 356
Q ss_pred HHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 402 LLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 402 ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
+|.++||.++++..++ ..+++|||++. .+++++++++|++
T Consensus 312 ~l~~~gv~v~~~~~~~---~~~~lRis~~~-~e~~~~l~~al~~ 351 (354)
T PRK04635 312 ALWDAGIVARAYKDPR---LANCIRFSFSN-RAETDKLIGLIRN 351 (354)
T ss_pred HHHHCCEEEEECCCCC---CCCeEEEEeCC-HHHHHHHHHHHHH
Confidence 6788999998764432 33589999985 4788888877753
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=298.42 Aligned_cols=311 Identities=16% Similarity=0.147 Sum_probs=235.8
Q ss_pred HHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCC
Q 041151 26 LYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSD 105 (463)
Q Consensus 26 ~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~ 105 (463)
+...++++...++++++|+.|.|.. +. | ..+... .....|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~-----~--~~~~~~-------~~~~~y~~ 46 (330)
T TIGR01140 5 LRRAAARYGIPPEDWLDFSTGINPL------------------------GP-----P--VPPIPA-------SAWARYPD 46 (330)
T ss_pred HHHHHHHcCCChhheeEccccCCCC------------------------CC-----C--hhhcch-------HHHhhCCC
Confidence 4455566665667899999998664 21 2 211111 13467888
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee-cCCCc
Q 041151 106 SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW-KRQQI 171 (463)
Q Consensus 106 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~-~~~~~ 171 (463)
+.+ +++|++++++++ +++++|++|+|+++++..+..++ .+| .|+++ .|.++ ...
T Consensus 47 ~~~-~~lr~~la~~~~------~~~~~i~~t~G~~~~i~~~~~~l--~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~-- 114 (330)
T TIGR01140 47 PEY-DELRAAAAAYYG------LPAASVLPVNGAQEAIYLLPRLL--APG-RVLVLAPTYSEYARAWRAAGHEVVELP-- 114 (330)
T ss_pred ccH-HHHHHHHHHHhC------CChhhEEECCCHHHHHHHHHHHh--CCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC--
Confidence 776 999999999985 67899999999999999987764 678 56665 55555 222
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
|+ +.+++.++ ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+.+ . .++...
T Consensus 115 --d~-~~l~~~~~-------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~-~----~~~~~~ 179 (330)
T TIGR01140 115 --DL-DRLPAALE-------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTP-D----ASLAPQ 179 (330)
T ss_pred --CH-HHHHhhcc-------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCC-c----cchhhH
Confidence 88 99998873 578999999999999999999999999999999999999999998754 1 133222
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
. +..+++|+++||||+| |++|+|+||++ +++++++.+..... .++++.+.|.++..++++.
T Consensus 180 ~-------~~~~~~i~~~S~SK~~-g~~G~R~G~i~---~~~~~~~~l~~~~~-~~~~s~~~q~~~~~~l~~~------- 240 (330)
T TIGR01140 180 A-------ARFPGLVVLRSLTKFF-GLAGLRLGFVV---AHPALLARLREALG-PWTVNGPARAAGRAALADT------- 240 (330)
T ss_pred h-------ccCCCEEEEEecchhh-cCchhhhhhee---CCHHHHHHHHhcCC-CCCchHHHHHHHHHHHhch-------
Confidence 1 2235799999999999 99999999999 58889999888765 5677899999999998631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV 411 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~ 411 (463)
.+.+..++.++++++.+.+.|++++++.+. +.+++|+|++++ . ..++... |.++||.+.
T Consensus 241 ----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~--~-------------~~~l~~~-l~~~gi~v~ 299 (330)
T TIGR01140 241 ----AWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTP--D-------------AAALHEA-LARRGILIR 299 (330)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcC--C-------------HHHHHHH-HHHCCEEEE
Confidence 122346788999999999999998556654 457899996543 1 3455544 556899999
Q ss_pred CCCCCCCCCCCcEEEEEecCCcCcHHHHHHHH
Q 041151 412 PGSGFGQKEGIFHLRTTILPAEEDMPAIMESF 443 (463)
Q Consensus 412 pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l 443 (463)
||..|+.. +.+++||+++...++ +.++.+|
T Consensus 300 pg~~f~~~-~~~~iRi~~~~~~~~-~~~~~~l 329 (330)
T TIGR01140 300 DFDNFPGL-DPRYLRFALPTDEEN-DRLEEAL 329 (330)
T ss_pred ECCCCCCC-CCCEEEEEecCHHHH-HHHHHhh
Confidence 99999642 345999999965444 6666665
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=297.52 Aligned_cols=298 Identities=19% Similarity=0.275 Sum_probs=224.4
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
+.++|+|+.|.|.+ +. |+.+++++.+++... ....|++ .|.+.||+++
T Consensus 17 ~~~~i~l~~~~~~~------------------------~~-----~~~~~~~~~~~~~~~--~~~~Y~~-~g~~~lr~~i 64 (337)
T PRK03967 17 GNYRIWLDKNENPF------------------------DL-----PEELKEEIFEELKRV--PFNRYPH-ITSDPLREAI 64 (337)
T ss_pred CCceEEecCCCCCC------------------------CC-----CHHHHHHHHHHhhcC--ccccCCC-CCHHHHHHHH
Confidence 34679999998774 43 788999998877542 3567875 6999999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccChHHHH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLIINDL 179 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l 179 (463)
++|++ +++++|++|+|+++++..++..+ +||+|+++ .|+++ ...++++|+ +.+
T Consensus 65 a~~~~------~~~~~I~~t~G~~~~l~~~~~~~---~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l 134 (337)
T PRK03967 65 AEFYG------LDAENIAVGNGSDELISYLVKLF---EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDG-ERI 134 (337)
T ss_pred HHHhC------cCcceEEEcCCHHHHHHHHHHHh---CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCH-HHH
Confidence 99996 78999999999999999887765 69999997 55555 234578999 999
Q ss_pred HHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCC
Q 041151 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259 (463)
Q Consensus 180 ~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++.+ + +++++++++||||||.+++.+++.+++ +++++||+||+|.++.. . +.....
T Consensus 135 ~~~~-~------~~~~v~~~~P~NPtG~~~~~~~l~~i~----~~~~~ii~De~y~~~~~---~---~~~~~~------- 190 (337)
T PRK03967 135 AEKA-K------NASAVFICSPNNPTGNLQPEEEILKVL----ETGKPVVLDEAYAEFSG---K---SLIGLI------- 190 (337)
T ss_pred HHhc-c------CCCEEEEeCCCCCCCCCCCHHHHHHHH----hcCCEEEEECchhhhcc---c---chHHHH-------
Confidence 8764 2 689999999999999999987777664 36999999999998642 1 121211
Q ss_pred CCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 041151 260 SKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESK 339 (463)
Q Consensus 260 ~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (463)
....++|+++||||+| |+||+|+||++ +++++++.+.+... .++++.+.|.++..++++ .+ +..
T Consensus 191 ~~~~~vi~l~S~SK~~-~l~GlRiG~iv---~~~~~i~~~~~~~~-~~~~~~~~q~~~~~~l~~-------~~----~~~ 254 (337)
T PRK03967 191 DEYPNLILLRTFSKAF-GLAGIRAGYAI---ANEEIIDALYRIKP-PFSLNILTMKIVRLALDH-------YD----LIE 254 (337)
T ss_pred hhCCCEEEEecchHhh-cchhhhheeee---cCHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhC-------HH----HHH
Confidence 2224799999999999 99999999999 68999999988776 567899999999999852 11 222
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC
Q 041151 340 GILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK 419 (463)
Q Consensus 340 ~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~ 419 (463)
+.++.+.++++.+.+.|.+. ..|.+++|+|++++ ..+.|.++||.|+++...
T Consensus 255 ~~~~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~~--------------------~~~~l~~~gi~v~~~~~~--- 306 (337)
T PRK03967 255 ERIDYIIKERERVRRELGEY-----AYPSDANFLLLKLD--------------------AYDYLLENGIVVRKLSGR--- 306 (337)
T ss_pred HHHHHHHHHHHHHHHHhccC-----cCCCCCcEEEEhHH--------------------HHHHHHHCCEEEEeCCCC---
Confidence 33445566677888888764 24678899995432 224455689999986522
Q ss_pred CCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 420 EGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 420 ~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
..+++||+++.. ++.+++++.|+.+
T Consensus 307 -~~~~~Ri~~~~~-~~~~~l~~~l~~~ 331 (337)
T PRK03967 307 -LEGHIRVTVGKR-EENDEFIKALKEI 331 (337)
T ss_pred -CCCeEEEecCCH-HHHHHHHHHHHHH
Confidence 234899999954 5666777666554
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=292.77 Aligned_cols=267 Identities=15% Similarity=0.212 Sum_probs=203.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCceecC
Q 041151 102 AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTWKR 168 (463)
Q Consensus 102 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~~~ 168 (463)
.|+.. ...||++|+++++ +++|++|+|++++|..++ ++ .+||+|+++ .|+++
T Consensus 46 ~yp~~--~~~Lr~~ia~~~~--------~~~I~it~Gs~~al~~~~--~~-~~gd~v~v~~P~y~~~~~~~~~~g~~~-- 110 (330)
T PRK05664 46 RLPET--DDGLEAAARAYYG--------APQLLPVAGSQAAIQALP--RL-RAPGRVGVLSPCYAEHAHAWRRAGHQV-- 110 (330)
T ss_pred hCCCC--hHHHHHHHHHHhC--------CCCEEECcCHHHHHHHHH--Hc-cCCCEEEEcCCChHHHHHHHHHcCCeE--
Confidence 47653 3899999999984 479999999999999885 34 799999997 45544
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
..++. +.+++.+. +++++++||||||||.++|.+++++|+++|++++++||+||+|.++. +..++
T Consensus 111 --~~v~~-~~~~~~~~-------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~-----~~~s~ 175 (330)
T PRK05664 111 --RELDE-AEVEAALD-------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT-----PQHSL 175 (330)
T ss_pred --EEech-hhHhhhhc-------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC-----Ccccc
Confidence 12334 55665553 57899999999999999999999999999999999999999998642 11233
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
..+ ...+++|+++||||+| |+||+|+||++ +++++++.+.+... .++.+.+.|.++..+|.+.
T Consensus 176 ~~~--------~~~~~vi~~~SfSK~~-gl~GlRiG~~v---~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~L~~~---- 238 (330)
T PRK05664 176 AAC--------AHRPGLIVLRSFGKFF-GLAGARLGFVL---AEPALLRALAELLG-PWTVSGPTRWLAQAALADT---- 238 (330)
T ss_pred ccc--------ccCCCEEEEeeccccc-cCCCcceEEEE---eCHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhCh----
Confidence 333 3345799999999999 99999999999 68999999988765 5677889999999998531
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCce--eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhc
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGA--MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEAT 406 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 406 (463)
.+.+..++.++++++.+.+.|++. |+. +.++ +|+|+ +.+. +.++ .+.|.++
T Consensus 239 -------~~~~~~~~~~~~~r~~l~~~L~~~-~~~---~~~~~~~f~~~--~~~~-------------~~~~-~~~l~~~ 291 (330)
T PRK05664 239 -------PWQRRQRERLLAASQRLAALLRRH-GLT---PAGGCALFQWV--RTED-------------AAAL-HEFLARR 291 (330)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHC-CCc---ccCCcceEEEE--ecCC-------------HHHH-HHHHHHC
Confidence 123456888999999999999987 653 3445 67774 4331 3344 4567788
Q ss_pred CeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 407 GISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 407 gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
||.|.+ |+. .+++||+++.+.++++++++.|+++.+
T Consensus 292 gi~v~~---f~~---~~~iRis~~~~~~~~~~l~~al~~~~~ 327 (330)
T PRK05664 292 GILTRL---FEQ---PASLRFGLPADEADWARLDQALLAYRK 327 (330)
T ss_pred CeEEEE---CCC---CCeEEEECCCCHHHHHHHHHHHHHHHh
Confidence 999985 542 248999999655677777777766544
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=293.09 Aligned_cols=274 Identities=14% Similarity=0.193 Sum_probs=208.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCC-CCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSD-PELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW 166 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~ 166 (463)
..|++.. .+||+++|++++ ++ +++|++|+|++++|..+.. ++ ++|+ |+++ .|+++
T Consensus 49 ~~Yp~~~--~~L~~~ia~~~~------~~~~~~I~i~~Gs~e~i~~l~~-~~-~~g~-v~v~~P~y~~y~~~~~~~g~~~ 117 (339)
T PRK06959 49 RRLPEDD--DGLAACAARYYG------APDAAHVLPVAGSQAAIRALPA-LL-PRGR-VGIAPLAYSEYAPAFARHGHRV 117 (339)
T ss_pred HhCCCch--HHHHHHHHHHhC------CCCcccEEECcCHHHHHHHHHH-hc-CCCe-EEEcCCCcHHHHHHHHHCCCEE
Confidence 4588754 899999999986 54 5899999999999997755 55 7887 6664 55554
Q ss_pred cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCcc
Q 041151 167 KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFV 246 (463)
Q Consensus 167 ~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~ 246 (463)
.. ++. +. +.+.+ .++++++||||||||.++|.+++++|++.|++++.+||+||+|.++.+ . .
T Consensus 118 ~~----v~~-~~--~~~~~------~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~-~----~ 179 (339)
T PRK06959 118 VP----LDE-AA--DTLPA------ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLP-A----A 179 (339)
T ss_pred Ee----ecc-cc--hhccc------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCC-c----c
Confidence 10 111 11 11222 568999999999999999999999999999999999999999998654 1 2
Q ss_pred chHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCC
Q 041151 247 SSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
++..+ .+..++|+++||||.| |+||+|+||++ +++++++.+.+... .++++.+.|.++.++|++
T Consensus 180 s~~~~--------~~~~~vi~l~SfSK~~-gl~GlRiGy~v---~~~~li~~l~~~~~-~~~vs~~~q~a~~~~L~~--- 243 (339)
T PRK06959 180 SLAAH--------TDRPGLVVLRSVGKFF-GLAGVRAGFVL---AAPALLAALRDALG-AWTVSGPARHAVRAAFAD--- 243 (339)
T ss_pred cchhc--------cCCCCEEEEecChhhc-CCcchheEEEe---cCHHHHHHHHHhcC-CCCCcHHHHHHHHHHhCc---
Confidence 33322 2234689999999999 99999999999 69999999998876 567899999999999863
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhc
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEAT 406 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 406 (463)
.. + .++.++.++++++.+.+.|+++ |+.+. .+++|+|++++ . ...+ ...|.++
T Consensus 244 --~~---~---~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~~f~~~~~~--~-------------~~~l-~~~l~~~ 296 (339)
T PRK06959 244 --AA---W---QAAMRERLAADGARLAALLRAH-GFAVH--ATPLFSWTDDP--R-------------AAAL-HAALARR 296 (339)
T ss_pred --HH---H---HHHHHHHHHHHHHHHHHHHHHC-CCCcc--CcceEEEEeCC--C-------------HHHH-HHHHHhC
Confidence 11 2 3356788999999999999998 77665 35789996543 1 2333 4557788
Q ss_pred CeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 407 GISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 407 gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
||.|+. |+. .+++||+++.+.++++++++.|+++++.+..
T Consensus 297 GI~vr~---~~~---~~~lRisi~~~~~e~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 297 GIWTRY---FAP---PPSVRFGLPADEAEWQRLEDALAECVPTLAA 336 (339)
T ss_pred CeEEEE---CCC---CCeEEEECCCCHHHHHHHHHHHHHHHHHHhh
Confidence 999985 432 2389999976668999999999988876653
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=282.34 Aligned_cols=275 Identities=15% Similarity=0.229 Sum_probs=199.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+.+++.+++.. ...|+. ...||++++++++ ++|++|+|+++++..++.. + .+||.|+++
T Consensus 22 p~~~~~a~~~~~~~----~~~yp~---~~~l~~~ia~~~~---------~~I~vt~G~~~al~~~~~~-~-~~gd~vlv~ 83 (311)
T PRK08354 22 PEWLDEMFERAKEI----SGRYTY---YEWLEEEFSKLFG---------EPIVITAGITEALYLIGIL-A-LRDRKVIIP 83 (311)
T ss_pred CHHHHHHHHHHHHH----hhcCCC---hHHHHHHHHHHHC---------CCEEECCCHHHHHHHHHHh-h-CCCCeEEEe
Confidence 66777777766543 346764 4679999998874 4799999999999988854 4 589999997
Q ss_pred -------------cCceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEE
Q 041151 162 -------------FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVL 228 (463)
Q Consensus 162 -------------~g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~v 228 (463)
.|+++. ...+|+ +.+++.++ ++++++++|||||||.+++.+++++|+++|++++++|
T Consensus 84 ~P~y~~~~~~~~~~g~~~~--~~~~d~-~~l~~~~~-------~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~l 153 (311)
T PRK08354 84 RHTYGEYERVARFFAARII--KGPNDP-EKLEELVE-------RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALL 153 (311)
T ss_pred CCCcHHHHHHHHHcCCEEe--ecCCCH-HHHHHhhc-------CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEE
Confidence 455541 235788 99988765 3678999999999999999999999999999999999
Q ss_pred EecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhccc
Q 041151 229 LGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALS 308 (463)
Q Consensus 229 i~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~ 308 (463)
|+||+|.++.++ +. +. . ..++|+++||||+| ++||+|+||++ + +.+.+++... .+.
T Consensus 154 i~De~y~~f~~~-~~---~~-----------~-~~~vi~~~S~SK~~-~l~GlRiG~~v---~---~~~~l~~~~~-~~~ 209 (311)
T PRK08354 154 ILDEAFIDFVKK-PE---SP-----------E-GENIIKLRTFTKSY-GLPGIRVGYVK---G---FEEAFRSVRM-PWS 209 (311)
T ss_pred EEeCcchhcccc-cc---cc-----------C-CCcEEEEeccHhhc-CCccceeeeee---e---hHHHHHHcCC-Ccc
Confidence 999999998773 21 10 1 23799999999999 99999999999 4 5666766654 455
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
.+.+.|.++..++. ..+ ++..+.++.++++++.+.+.+ ..+|+++|+++ ++ +
T Consensus 210 ~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~l~~~l-------~~~~~~~~~~~-~~--~-------- 261 (311)
T PRK08354 210 IGSTGYAFLEFLIE------DDF----EHLRKTMPLIWREKERFEKAL-------YVKSDANFFIK-DV--G-------- 261 (311)
T ss_pred CCHHHHHHHHHHHH------hHH----HHHHHHHHHHHHHHHHHHHhc-------CCCCCCcEEEE-EC--C--------
Confidence 66677777777764 111 222233444555555444433 23577777764 33 2
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
++.+++ +.|.++||.|+||+.|+. + +++||+++.. ++.+++++.|+++
T Consensus 262 -----~~~~~~-~~l~~~gv~v~~g~~f~~-~--~~iRi~~~~~-~~~~~l~~al~~~ 309 (311)
T PRK08354 262 -----DAEKFV-EFLKRNGILVRDCTSFGL-P--GYIRFSVRDR-EENEKLIRALREW 309 (311)
T ss_pred -----CHHHHH-HHHHHCCeEEEecccCCC-C--CeEEEEeCCH-HHHHHHHHHHHHh
Confidence 134444 456788999999999974 2 5999999954 3566666666553
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=282.94 Aligned_cols=360 Identities=16% Similarity=0.125 Sum_probs=258.9
Q ss_pred hhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHh
Q 041151 14 NVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYL 93 (463)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~ 93 (463)
+++.++++.+..+...++++++.|.++++|+.|+|+. +.+. +.+ ...+.+++.+++
T Consensus 12 r~~~v~~~~~~~~~~~~~~l~~~g~~~~~L~~g~p~~----------------------D~~t-ds~-t~a~~~a~~~a~ 67 (460)
T PRK13238 12 RIKMVEPIRLTTREERERALAEAGYNPFLLKSEDVFI----------------------DLLT-DSG-TGAMSDRQWAAM 67 (460)
T ss_pred eeceeccccccCHHHHHHHHHHcCCCEEeCCCCCCCC----------------------CCCC-CCC-chhhhHHHHHHH
Confidence 5567899999999999999999999999999999942 0122 000 125677777777
Q ss_pred hhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------
Q 041151 94 SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------ 161 (463)
Q Consensus 94 ~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------ 161 (463)
.. ...+|++..|.++||++++++++ .+.|++|+|+++++..++.+++ +||| |+++
T Consensus 68 ~~---g~~~Y~~~~g~~~Lreaia~~~~--------~~~vv~t~ggt~A~~~~~~all-~pGD-Vii~~p~~~~~~~~i~ 134 (460)
T PRK13238 68 MR---GDEAYAGSRSYYRLEDAVKDIFG--------YPYTIPTHQGRAAEQILFPVLI-KKGD-VVPSNYHFDTTRAHIE 134 (460)
T ss_pred Hh---CCcccCCCCCHHHHHHHHHHHhC--------CCcEEECCCHHHHHHHHHHHhC-CCCC-EEccCCcccchHHHHH
Confidence 54 34689999999999999999985 3579999999999999999998 9999 7776
Q ss_pred -cCcee---cC---------CCcc--cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-cCCCHHHHHHHHHHhhhCC
Q 041151 162 -FHTTW---KR---------QQIG--VLIINDLQQSVAQARSKGITVRAMVIINPGNPTG-QCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 -~g~~~---~~---------~~~~--~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG-~~~s~~~l~~l~~~a~~~~ 225 (463)
.|+++ +. ++|. +|+ +.|++.+++... +++++|++++|||||| .++|.+++++|.++|++||
T Consensus 135 ~~G~~~v~v~~~~~~~~~~~~~f~g~id~-e~Le~~i~~~~~--~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~g 211 (460)
T PRK13238 135 LNGATAVDLVIDEALDTGSRHPFKGNFDL-EKLEALIEEVGA--ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYG 211 (460)
T ss_pred HcCCEEEEEeccccccccccccccCCcCH-HHHHHHHhhcCC--CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence 46666 11 2454 999 999999985210 1699999999999998 9999999999999999999
Q ss_pred eEEEeccccc--ccccCC----CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee------EEEEecCCCh
Q 041151 226 LVLLGDEVYQ--QNIYQD----ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG------GYFEMTNIPP 293 (463)
Q Consensus 226 ~~vi~Deay~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~------G~~~~~~~~~ 293 (463)
++||+|+++. ...|.. +....++..+. +.++|++|++ .++|+|+ ||+++ .++
T Consensus 212 i~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~-------------~~~~s~~D~~-~~Sg~K~g~~~~GG~i~~--~d~ 275 (460)
T PRK13238 212 IPVVIDAARFAENAYFIKQREPGYKDKSIKEIA-------------REMFSYADGL-TMSAKKDAMVNIGGLLCF--RDE 275 (460)
T ss_pred CEEEEECcchhhhhhhhhhccccccCCCHHHHh-------------hhhcccCcEE-EEecccCCCCcceeEEEc--ChH
Confidence 9999999663 233311 12334544331 2334555555 4555553 45553 236
Q ss_pred hHHHHHHhhh----h-hcccC-ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Q 041151 294 KTVDEIYKIA----S-IALSP-NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT 367 (463)
Q Consensus 294 ~~~~~l~~~~----~-~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~ 367 (463)
++++++++.. . .+++. +...|.+++..+.... + +.+.. ...+++++|.+.|++. |+.+..|
T Consensus 276 ~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~--~---~~~~~-------~~~~~~~~l~~~L~~~-G~~~~~p 342 (460)
T PRK13238 276 DLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM--D---EDYLA-------YRIGQVEYLGEGLEEA-GVPIQTP 342 (460)
T ss_pred HHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh--C---hHHHH-------HHHHHHHHHHHHHHHC-CCCeEcc
Confidence 7888887763 2 23344 4444777776654210 0 11222 1233578999999987 9999999
Q ss_pred CceeEEeeecc-CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----C------CcEEEEEecC---Cc
Q 041151 368 EGAMYSFPQIR-LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----G------IFHLRTTILP---AE 433 (463)
Q Consensus 368 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----~------~~~lRis~~~---~~ 433 (463)
.|++|+++++. ++.+. +..+. ++..++..++++.||.+.|++.|..+. + ...+|+++.. +.
T Consensus 343 ~Gg~~v~~d~~~~~~~~----~~~~~-~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~ 417 (460)
T PRK13238 343 AGGHAVFVDAGKFLPHI----PAEQF-PAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQ 417 (460)
T ss_pred CCceEEEEEchhcCCCC----CCCCC-chHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCH
Confidence 99999998885 21110 00001 257789999999999999999886532 2 4689999996 88
Q ss_pred CcHHHHHHHHHHHH
Q 041151 434 EDMPAIMESFKKFN 447 (463)
Q Consensus 434 e~i~~~~~~l~~~l 447 (463)
+.++.+.++|+.+.
T Consensus 418 ~~~~~~~~~l~~~~ 431 (460)
T PRK13238 418 SHMDYVAEALKAVK 431 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=259.18 Aligned_cols=317 Identities=23% Similarity=0.412 Sum_probs=240.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
++..+.+..+ .........|++..|..++++.+++++...++.+..++++++++|+++++..++.++. ++|++|+++
T Consensus 13 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~g~~vl~~ 89 (350)
T cd00609 13 PPEVLEALAA--AALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL-NPGDEVLVP 89 (350)
T ss_pred CHHHHHHHHH--HhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC-CCCCEEEEc
Confidence 4555555544 2222356788899999999999999999888876778899999999999999999997 899999998
Q ss_pred -------------cCcee---cC-CCcccCh-HHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 162 -------------FHTTW---KR-QQIGVLI-INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 162 -------------~g~~~---~~-~~~~~d~-~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
.|..+ +. .....+. .+.++....+ ++++|++++|+||||.+++.+++.+|+++|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~ 163 (350)
T cd00609 90 DPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTP------KTKLLYLNNPNNPTGAVLSEEELEELAELAKK 163 (350)
T ss_pred CCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHh
Confidence 34343 21 2222221 0333333333 79999999999999999999999999999999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh-hHHHHHHhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-KTVDEIYKI 302 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~l~~~ 302 (463)
+|+++|+|++|+.+.+. +....... .. +..+.+++++|+||.+ +.+|+|+||+++ ++ ++.+.+...
T Consensus 164 ~~~~~ivD~a~~~~~~~-~~~~~~~~----~~----~~~~~~~~~~s~~K~~-~~~g~~~G~i~~---~~~~~~~~~~~~ 230 (350)
T cd00609 164 HGILIISDEAYAELVYD-GEPPPALA----LL----DAYERVIVLRSFSKTF-GLPGLRIGYLIA---PPEELLERLKKL 230 (350)
T ss_pred CCeEEEEecchhhceeC-Cccccccc----Cc----CccCcEEEEeeccccc-CCcccceEEEec---CHHHHHHHHHHH
Confidence 99999999999987763 22211011 11 3445689999999999 889999999994 66 788888877
Q ss_pred hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCCh
Q 041151 303 AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP 381 (463)
Q Consensus 303 ~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~ 381 (463)
.. ..++++...|.++..+++.. .++.+++++.++++++++.+.|++.+...+..+.+++++|+.++-+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~- 299 (350)
T cd00609 231 LPYTTSGPSTLSQAAAAAALDDG----------EEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG- 299 (350)
T ss_pred HHhcccCCChHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC-
Confidence 65 45788899999998888631 1456677888999999999999987444435677889999655422
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFK 444 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~ 444 (463)
.+.+.+.++|.++||.+.++..|.. .+..++|++++...+|++.++++|+
T Consensus 300 ------------~~~~~~~~~l~~~gi~i~~~~~~~~-~~~~~iRi~~~~~~~~i~~~~~al~ 349 (350)
T cd00609 300 ------------DDEEFLERLLLEAGVVVRPGSAFGE-GGEGFVRLSFATPEEELEEALERLA 349 (350)
T ss_pred ------------ChHHHHHHHHHhCCEEEeccccccc-CCCCeEEEEeeCCHHHHHHHHHHhh
Confidence 1355677889999999999988864 3445899999944899999999885
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=247.11 Aligned_cols=291 Identities=15% Similarity=0.144 Sum_probs=210.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
.+.+++++.+++..+ .++. .-+.+|++.+|+|++ ++++++++++|+++++..++.+++ +|||.|+++
T Consensus 35 ~~~~~~~~~~~~~~~----~g~~--~~~~~Le~~lA~~~g------~~~e~ilv~~gg~~a~~~~~~al~-~~gd~Vli~ 101 (346)
T TIGR03576 35 GFKIDEEDLELLETY----VGPA--IFEEKVQELGREHLG------GPEEKILVFNRTSSAILATILALE-PPGRKVVHY 101 (346)
T ss_pred ChhHHHHHHHHHHHh----cCCH--HHHHHHHHHHHHHcC------CCcceEEEECCHHHHHHHHHHHhC-CCCCEEEEC
Confidence 778899988888773 1222 223566666666664 678999999999999999999998 999999863
Q ss_pred ----------------cCceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 ----------------FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 ----------------~g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
.|+++.. -.|+ +.++. .+ ++++|+++ ++||+|.+++.+++++|+++|++++
T Consensus 102 ~~d~p~~~s~~~~~~l~ga~~~~---~~~l-~~l~~--~~------~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~~ 168 (346)
T TIGR03576 102 LPEKPAHPSIPRSCKLAGAEYFE---SDEL-SELKK--ID------GTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSKE 168 (346)
T ss_pred CCCCCCchhHHHHHHHcCCEEec---cCCH-HHHhh--Cc------CceEEEEE-CCCCCCcccCHHHHHHHHHHHHHcC
Confidence 2222200 1244 55322 11 57887775 5699999999999999999999999
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS- 304 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~- 304 (463)
++||+||+|..+..+ .....+... + .. .|+++||||++ +|+|+||++ +++++++.+.+...
T Consensus 169 ~~livDEAy~~~~~~-~~~~~~~~~----~----~~---divv~s~SKal---aG~r~G~v~---~~~~li~~l~~~~~~ 230 (346)
T TIGR03576 169 AIVLVDDASGARVRR-LYGQPPALD----L----GA---DLVVTSTDKLM---DGPRGGLLA---GRKELVDKIKSVGEQ 230 (346)
T ss_pred CEEEEECCccccccc-cCCCCCHHH----c----CC---cEEEeccchhc---cccceEEEE---eCHHHHHHHHHhhcC
Confidence 999999999986531 111112221 1 21 26778999954 799999999 69999999998875
Q ss_pred hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhH
Q 041151 305 IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAI 384 (463)
Q Consensus 305 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~ 384 (463)
..++++++.|.++.++|+.. . .+.+++.++++++++.+.++++ .+.++.++ |+|++++.
T Consensus 231 ~~~s~~~~~~~aa~~aL~~~-----------~-~~~~~~~l~~r~~~~~~~l~~~---~~~~~~~~-f~~~~~~~----- 289 (346)
T TIGR03576 231 FGLEAQAPLLAAVVRALEEF-----------E-LSRIRDAFKRKEEVYLRLFDKL---NVERTPTG-FVIKGVEE----- 289 (346)
T ss_pred cccCccHHHHHHHHHHHhhc-----------c-HHHHHHHHHHHHHHHHHHHHhC---CCCcCCCe-EEEEeCCC-----
Confidence 44557888998888887521 1 2345778888888888888743 44444555 68866541
Q ss_pred HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcC---cHHHHHHHHHHHH
Q 041151 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEE---DMPAIMESFKKFN 447 (463)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e---~i~~~~~~l~~~l 447 (463)
.++.+++..+|+++||.++||+.|.. ..+|+|||++.+++ +++.+++.|++-+
T Consensus 290 --------~~~~~~~~~ll~~~gV~v~~~~~f~~--~~~~vRis~~~~~~~~~~~~~~~~al~~~~ 345 (346)
T TIGR03576 290 --------EKLIEIGLDLLRNYGIITITAVGMPG--ASKTLRFDLAAKDAERIGDDYLVEAVKDSL 345 (346)
T ss_pred --------CCHHHHHHHHHHhCCEEEeCCcccCC--CCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence 12456788999999999999998842 24599999997655 7999999987654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=255.48 Aligned_cols=323 Identities=15% Similarity=0.153 Sum_probs=231.1
Q ss_pred cHHHHHHHHHHhhhcCC----CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSG----GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+.+++.+++.+++. ....|++..++.+|+++|+++++ .++.|++++|.+ ++..++.+++ ++||.
T Consensus 125 ~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s~G~~-a~~sai~a~~-~~gd~ 195 (481)
T PLN02822 125 NEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYSYGLS-TIFSVIPAFC-KKGDI 195 (481)
T ss_pred CHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEECCHHH-HHHHHHHHhC-CCCCE
Confidence 88999999999987532 12357777778999999999995 457899998877 6788999998 99999
Q ss_pred EEEc-------------cCceecCCCccc-ChHHHHHHHHHHHHhc---CCce-eEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 158 VVLL-------------FHTTWKRQQIGV-LIINDLQQSVAQARSK---GITV-RAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 158 Vlvp-------------~g~~~~~~~~~~-d~~~~l~~~l~~~~~~---~~~~-~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
|+++ .|.++ ..+.. |. +.++..+++..++ .+++ ++|+++.++|+||.+.+ +++|.+
T Consensus 196 Ii~d~~~H~s~~~~~~ls~~~~--~~~~~nd~-~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~---L~~i~~ 269 (481)
T PLN02822 196 IVADEGVHWGIQNGLYLSRSTI--VYFKHNDM-ESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP---LDEIVR 269 (481)
T ss_pred EEEeCCccHHHHHHHHHcCCeE--EEECCCCH-HHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC---HHHHHH
Confidence 9987 11122 00111 45 7777766643222 1234 68888899999999999 788888
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|++||+++|+||+|+...++ .... .+. ..+++ ......|+++||||++ |++| ||++ +++++++.+
T Consensus 270 l~~k~~~~LIvDEa~s~gvlG-~~G~-G~~---e~~~v--~~~~~dii~~s~sKal-g~~G---G~i~---g~~~ii~~~ 335 (481)
T PLN02822 270 LKEKYRFRVLLDESNSFGVLG-KSGR-GLS---EHFGV--PIEKIDIITAAMGHAL-ATEG---GFCT---GSARVVDHQ 335 (481)
T ss_pred HHHHcCCEEEEECCccccccC-CCCC-ChH---HHcCC--CCCCCeEEEecchhhh-hhCC---eEEE---cCHHHHHHH
Confidence 999999999999999977773 2211 121 22222 1123568999999999 7778 9998 799999988
Q ss_pred Hhhhh-hcccCC--hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeee
Q 041151 300 YKIAS-IALSPN--VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQ 376 (463)
Q Consensus 300 ~~~~~-~~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~ 376 (463)
+.... ..++.+ +..|.++.++|+ ..+...+++++++++++++.+.|++.+|+.+..+.+++++++.
T Consensus 336 ~~~~~~~~fsa~lPp~~~~Aa~~aL~-----------~l~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~ 404 (481)
T PLN02822 336 RLSSSGYVFSASLPPYLASAAITAID-----------VLEDNPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLH 404 (481)
T ss_pred HhcCCceeeccccCHHHHHHHHHHHH-----------HHHhCHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEE
Confidence 76543 344444 556666666653 2223356788999999999999998778888878889999877
Q ss_pred ccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCC--CCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPG--SGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg--~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
++-+.+.. ..+ ..+++..+++++||.+.|+ ..|+......++|++++ +++++|++++++|++++.+
T Consensus 405 l~~~~~~~-------~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 405 LEKSTGSA-------KEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred eCCCcccc-------cchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 74221100 001 2456777777899999976 44543222347999887 8999999999999999887
Q ss_pred HH
Q 041151 450 FM 451 (463)
Q Consensus 450 ~~ 451 (463)
..
T Consensus 478 ~~ 479 (481)
T PLN02822 478 VL 479 (481)
T ss_pred Hh
Confidence 64
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-28 Score=246.43 Aligned_cols=335 Identities=18% Similarity=0.208 Sum_probs=227.1
Q ss_pred hcccceeccCCC-CcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHH
Q 041151 36 EGKKIIFTNVGN-PHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRK 114 (463)
Q Consensus 36 ~~~~~i~l~~G~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~ 114 (463)
+|+++|||+.|+ |++ +. ++.+.+++.+.+.........|....|.+++++
T Consensus 40 ~g~~~i~l~~~~~~~~------------------------~~-----~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~ 90 (397)
T PRK06939 40 DGKEVINFCANNYLGL------------------------AN-----HPELIAAAKAALDSHGFGMASVRFICGTQDLHK 90 (397)
T ss_pred CCCeEEEeeccCcccc------------------------CC-----CHHHHHHHHHHHHHcCCCCcccccccCCcHHHH
Confidence 577899999987 443 33 788999998888763211223334578899999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCceecCCCcccChHHHHHH
Q 041151 115 EVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTWKRQQIGVLIINDLQQ 181 (463)
Q Consensus 115 ~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~~~~~~~~d~~~~l~~ 181 (463)
++++++.+.+|. +++|++|+| ++++..++.+++ +|||.|+++ .|.++.. -...|+ +.+++
T Consensus 91 ~l~~~la~~~g~---~~~i~~tsG-~~a~~~~~~~l~-~~gd~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~d~-~~l~~ 163 (397)
T PRK06939 91 ELEEKLAKFLGT---EDAILYSSC-FDANGGLFETLL-GKEDAIISDALNHASIIDGVRLCKAKRYR-YANNDM-ADLEA 163 (397)
T ss_pred HHHHHHHHHhCC---CcEEEEcCh-HHHHHHHHHHhC-CCCCEEEEEhhhhHHHHHHHHhcCCceEE-eCCCCH-HHHHH
Confidence 999999888773 378888888 778999999997 999999997 2333311 111588 99998
Q ss_pred HHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC
Q 041151 182 SVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261 (463)
Q Consensus 182 ~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
.+++....+.++++|++.+.+||||... ++++|+++|++++++||+||+|+...++ .... ..... .++ .+
T Consensus 164 ~i~~~~~~~~~~~~v~~~~v~~~~G~~~---~~~~l~~la~~~~~~li~De~~~~g~~~-~~~~-~~~~~-~~~----~~ 233 (397)
T PRK06939 164 QLKEAKEAGARHKLIATDGVFSMDGDIA---PLPEICDLADKYDALVMVDDSHAVGFVG-ENGR-GTVEH-FGV----MD 233 (397)
T ss_pred HHHhhhccCCCCeEEEEecCcCCCCCcC---CHHHHHHHHHHhCCEEEEECcccccCcC-CCCC-CHHHH-cCC----CC
Confidence 8875322222567777667899999864 4888899999999999999999743231 1111 11111 111 21
Q ss_pred CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc-C-ChHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 041151 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS-P-NVPAQIFMGLMVNPLKPGDISYEQFVRES 338 (463)
Q Consensus 262 ~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~-~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 338 (463)
+.+|+++|+||++ + |+|+||++ +++++++.+..... ...+ + +...+.++.++++ +..+.
T Consensus 234 -~~~i~~~S~sK~~-~--g~r~G~v~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~~ 295 (397)
T PRK06939 234 -RVDIITGTLGKAL-G--GASGGYTA---GRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLE-----------LLEES 295 (397)
T ss_pred -CCcEEEEECHHHh-C--ccCceEEE---eCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHH-----------HHhcC
Confidence 2469999999998 3 66999998 58889998876543 2222 2 2333444444432 22222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 339 KGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 339 ~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
++++++++++++++.+.|++. |+.+..+.++++.+ .++... ++.+++..++ ++||.+.++. |+.
T Consensus 296 ~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~---~~~~~~----------~~~~~~~~L~-~~gI~v~~~~-~~~ 359 (397)
T PRK06939 296 DELRDRLWENARYFREGMTAA-GFTLGPGEHPIIPV---MLGDAK----------LAQEFADRLL-EEGVYVIGFS-FPV 359 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEEEE---EECCHH----------HHHHHHHHHH-HCCceEeeeC-CCC
Confidence 457888999999999999987 77777677776644 222211 1445555554 5599999644 532
Q ss_pred -CCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 419 -KEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 419 -~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
..+..++|++++ .+++++++++++|++++++.
T Consensus 360 ~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 360 VPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 234468999986 78899999999999988653
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=230.75 Aligned_cols=358 Identities=18% Similarity=0.233 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCcc-
Q 041151 25 ELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAY- 103 (463)
Q Consensus 25 ~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y- 103 (463)
++....+++++.|.. +||+.|.|.. +++++...++.+........ .+.+...|
T Consensus 12 ~l~~~y~~~ka~~L~-LdmtRGKPs~---eQLdLS~~lL~~~~~~~~~~----------------------dG~D~RNY~ 65 (425)
T PF12897_consen 12 ELRKQYEELKAKGLK-LDMTRGKPSP---EQLDLSNPLLDLPGSSDYLA----------------------DGTDCRNYP 65 (425)
T ss_dssp HHHHHHHHHHHTT---EES---S--H---HHHHGGGGGGGSSTTCCBEC----------------------TTEBTTSS-
T ss_pred HHHHHHHHHHHcCCC-cccCCCCCCH---HHHhhhHHHhcCCCCccccC----------------------CCccccCCC
Confidence 345567777777765 9999999985 45555444444422221111 11267899
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHH-HHHH-HHh-----------cCCCCEEEEc---------
Q 041151 104 SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVM-QTLN-CVI-----------RGEGDGVVLL--------- 161 (463)
Q Consensus 104 ~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~-~~~~-~l~-----------~~~gd~Vlvp--------- 161 (463)
+...|++++|+.+|+.++ +++++|++..+++-.|. -++. +++ +.+.-+.++|
T Consensus 66 G~l~Gipe~r~l~a~llg------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFa 139 (425)
T PF12897_consen 66 GGLDGIPEARELFAELLG------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFA 139 (425)
T ss_dssp S-SS--HHHHHHHHHHHT------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHH
T ss_pred CccCChHHHHHHHHHHhC------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHH
Confidence 889999999999999998 89999999876654433 3222 221 1123457777
Q ss_pred ----cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHH-hhhCCeEEEecc
Q 041151 162 ----FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRF-CYQENLVLLGDE 232 (463)
Q Consensus 162 ----~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~-a~~~~~~vi~De 232 (463)
+|++. +....++|. +.+|+.+.+ .+.+|.||.. .-+||||.++|.|.+++|+++ +...|+.|+.|+
T Consensus 140 i~E~~Giemi~VpM~~dGPDm-D~Ve~LV~~----D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDN 214 (425)
T PF12897_consen 140 ITEHFGIEMIPVPMTEDGPDM-DMVEELVAE----DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDN 214 (425)
T ss_dssp HHHHCT-EEEEEEEETTEE-H-HHHHHHTHT----STTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-
T ss_pred HHHhhCcEEEecCCCCCCCCH-HHHHHHHhc----CCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeec
Confidence 77777 788899999 999999864 2378998766 559999999999999999998 445799999999
Q ss_pred cccccccCCCCC-c--cchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 233 VYQQNIYQDERP-F--VSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 233 ay~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
+|....+.++.+ . ..+...+... +..++++.+.|.||..+ ||..++++. ++++.++.+.+..+ .+++
T Consensus 215 AY~vHhL~~~~~~~~~~nil~~~~~A----Gnpdrv~~F~STSKITf--~GaGva~~a---aS~~Nl~~~~~~~~~~tIg 285 (425)
T PF12897_consen 215 AYAVHHLYDEEPRDALLNILDACAKA----GNPDRVYVFASTSKITF--PGAGVAFFA---ASEANLAWIKKHLSVQTIG 285 (425)
T ss_dssp TTTT-BSSSSSS------HHHHHHHT----T-TTSEEEEEESTTTS---TTSS-EEEE---E-HHHHHHHHHHHHHH-S-
T ss_pred CceEeeccccccchhhhHHHHHHHHc----CCCCeEEEEeccccccc--CCcceeeee---cCHHHHHHHHHHhcCceeC
Confidence 999877632222 2 3677777777 55568999999999865 899999999 58888899888876 7899
Q ss_pred CChHHHHHHHHhcCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhc-C----CCcccccCCceeEEeeeccCChh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYE-QFVRESKGILESLRRRARMMTDGFNS-C----RNVVCNFTEGAMYSFPQIRLPPK 382 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~-~----pg~~~~~~~g~~~~~~~~~~~~~ 382 (463)
+..+.|..-..++++ .+ ....++++.++.++-+.+.+.+.|++ + ....|..|.||||+++++. .+
T Consensus 286 pdKvNQLRHvrff~d-------~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~--~G 356 (425)
T PF12897_consen 286 PDKVNQLRHVRFFKD-------AEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVL--DG 356 (425)
T ss_dssp --HHHHHHHHHHHHS-------HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEES--TT
T ss_pred ccHHHHHHHHHHhcC-------hhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecC--CC
Confidence 999999999999964 33 34455666666666666666655543 3 2358899999999996543 23
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCCC--CCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGFG--QKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~--~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
.+..+.+++++.||.+.| |+.|. ..+....|||+.+ .+.+|++.+++.+.-+++-
T Consensus 357 ------------~AkrvV~lakeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P~leel~~Am~~~~~cv~l 415 (425)
T PF12897_consen 357 ------------TAKRVVELAKEAGVALTPAGATFPYGKDPRDSNIRIAPSYPSLEELETAMDVFATCVKL 415 (425)
T ss_dssp -------------HHHHHHHHHHTTEE---TTTTSGGG--TTS-EEEE--SSS-HHHHHHHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHhCceeCCCCCCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 455677899999999999 77773 3355678999999 8999999999999887654
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=242.71 Aligned_cols=326 Identities=15% Similarity=0.142 Sum_probs=218.6
Q ss_pred HhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCC----H
Q 041151 35 KEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGI----P 110 (463)
Q Consensus 35 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~----~ 110 (463)
.+|+++|||+.|+|. |. +. |+.+++++.+++..+......|....|. .
T Consensus 13 ~~g~~~id~~~~~~~--g~---------------------~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~ 64 (360)
T TIGR00858 13 RDGRRLLNFSSNDYL--GL---------------------AS-----HPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHE 64 (360)
T ss_pred ECCceEEecccCCcc--cC---------------------CC-----CHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHH
Confidence 468889999999653 11 22 6889999998887643222223333343 3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCceecCCCcccChHH
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTWKRQQIGVLIIN 177 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~~~~~~~~d~~~ 177 (463)
+++++++++++ .+++|++++|+.+ +..++.+++ ++||+|+++ .|.++. .-..+|+ +
T Consensus 65 ~l~~~la~~~~-------~~~~i~~~~G~~~-~~~~l~~~~-~~gd~v~~~~~~~~~~~~~~~~~g~~~~-~~~~~d~-~ 133 (360)
T TIGR00858 65 ELEEELAEWKG-------TEAALLFSSGYLA-NVGVISALV-GKGDLILSDALNHASLIDGCRLSGARVR-RYRHNDV-E 133 (360)
T ss_pred HHHHHHHHHhC-------CCCEEEECchHHH-HHHHHHHhC-CCCCEEEEEccccHHHHHHHHhcCCceE-EecCCCH-H
Confidence 46667766663 3568888888554 556778887 899999986 333331 1123688 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
.|++.++... ++++++|++.+++||||...+ +++|.++|++++++||+||+|..+.++ .. ..+.... .++
T Consensus 134 ~l~~~~~~~~--~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~-~~-~~~~~~~-~~~-- 203 (360)
T TIGR00858 134 HLERLLEKNR--GERRKLIVTDGVFSMDGDIAP---LPQLVALAERYGAWLMVDDAHGTGVLG-ED-GRGTLEH-FGL-- 203 (360)
T ss_pred HHHHHHHHcc--cCCCeEEEEeCCccCCCCCcC---HHHHHHHHHHcCcEEEEECcccccCcC-CC-CCchHHh-cCC--
Confidence 9999887520 014678888899999998876 677888899999999999999876552 21 1122221 112
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h--cccCChHHHHHHHHhcCCCCCCCchHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I--ALSPNVPAQIFMGLMVNPLKPGDISYEQF 334 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 334 (463)
..++++|+++||||+| +++| ||++ +++++++.+.+... . ..+.+...+.++.++++ +
T Consensus 204 --~~~~~~i~i~s~sK~~-~~~g---G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~-----------~ 263 (360)
T TIGR00858 204 --KPEPVDIQVGTLSKAL-GSYG---AYVA---GSQALIDYLINRARTLIFSTALPPAVAAAALAALE-----------L 263 (360)
T ss_pred --CccCCcEEEEechhhh-hccC---cEEE---cCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHH-----------H
Confidence 3345789999999999 6666 9998 68888888865443 2 22334444444445542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 335 VRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
..+.+.++++++++++++.+.|+++ ++.+.++ ++.++|+.++ ... ++.++. +.|.++||.+.++.
T Consensus 264 ~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~-~~~~~~~~~~--~~~----------~~~~~~-~~l~~~gI~v~~~~ 328 (360)
T TIGR00858 264 IQEEPWRREKLLALIARLRAGLEAL-GFTLMPS-CTPIVPVIIG--DNA----------SALALA-EELQQQGIFVGAIR 328 (360)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHc-CCccCCC-CCCEEEEEeC--CHH----------HHHHHH-HHHHHCCeeEeeeC
Confidence 2223456889999999999999987 6776644 5567775543 211 133444 45567899999987
Q ss_pred CCCCCCCCcEEEEEec--CCcCcHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~ 444 (463)
.++...+.+++||++. .+++++++++++|+
T Consensus 329 ~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 329 PPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 7654334568999999 58899999998874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=244.48 Aligned_cols=330 Identities=16% Similarity=0.164 Sum_probs=225.9
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCC---CC---
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSR---GI--- 109 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~---g~--- 109 (463)
+|+++|||+.|++-. .+. ++.+++++.+++..+ ..+|+++. |.
T Consensus 36 ~g~~~i~~~~~~~lg-----------------------~~~-----~~~v~~~~~~~~~~~---~~~~~~s~~~~G~~~~ 84 (393)
T TIGR01822 36 DGREVLNFCANNYLG-----------------------LSS-----HPDLIQAAKDALDEH---GFGMSSVRFICGTQDI 84 (393)
T ss_pred CCceEEEeeCCCccc-----------------------cCC-----CHHHHHHHHHHHHHh---CCCCCCcCcccCChHH
Confidence 677899999997532 133 788999999888763 13566555 75
Q ss_pred -HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------cCcee----cCCCcccChH
Q 041151 110 -PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------FHTTW----KRQQIGVLII 176 (463)
Q Consensus 110 -~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------~g~~~----~~~~~~~d~~ 176 (463)
.+|++++|++++ .+++++++|+++++..++.+++ ++||.|+++ .+.+. ...-...|+
T Consensus 85 ~~~le~~ia~~~g--------~~~~ii~~~~~~a~~~~~~~l~-~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~~~d~- 154 (393)
T TIGR01822 85 HKELEAKIAAFLG--------TEDTILYASCFDANGGLFETLL-GAEDAIISDALNHASIIDGVRLCKAKRYRYANNDM- 154 (393)
T ss_pred HHHHHHHHHHHhC--------CCcEEEECchHHHHHHHHHHhC-CCCCEEEEeccccHHHHHHHHhcCCceEEeCCCCH-
Confidence 788999998885 2567888888999999999998 999999997 11111 111124788
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.|++.+++....+.++++|++++++||||.+.+ +++|+++|++||++||+||+|+...++ . ...+.... .++
T Consensus 155 ~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~-~-~~~~~~~~-~~~- 227 (393)
T TIGR01822 155 ADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP---LDEICDLADKYDALVMVDECHATGFLG-P-TGRGSHEL-CGV- 227 (393)
T ss_pred HHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcC-C-CCCchHHh-cCC-
Confidence 9999998864222236788888899999999977 788888999999999999999754331 1 11122221 111
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc--CChHHHHHHHHhcCCCCCCCchHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS--PNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
. .+.+++++|+||++ +|+|+||++ +++++++.+.+... ...+ .+...+.++.++++
T Consensus 228 ---~-~~~di~~~s~sK~l---~g~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~----------- 286 (393)
T TIGR01822 228 ---M-GRVDIITGTLGKAL---GGASGGFTT---ARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLE----------- 286 (393)
T ss_pred ---C-CCCeEEEEEChHHh---hCCCcEEEE---eCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHH-----------
Confidence 2 13568999999987 478999998 68999998876532 2222 23333344444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg 413 (463)
..+..++++++++++++++.+.|++. |+.+..+.+.++.+ .++... +..+++.. |.++||.+. +
T Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~i---~~~~~~----------~~~~l~~~-L~~~gI~v~-~ 350 (393)
T TIGR01822 287 MLEASNELRDRLWANTRYFRERMEAA-GFDIKPADHPIIPV---MLYDAV----------LAQRFARR-LLEEGIYVT-G 350 (393)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEEEE---EeCCHH----------HHHHHHHH-HHHCCeeEe-e
Confidence 22234567888999999999999886 87776555554332 322211 13455555 455699998 5
Q ss_pred CCCCC-CCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 414 SGFGQ-KEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 414 ~~f~~-~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
..|.. +.+..++|++++ ++++|+++++++|+++++++
T Consensus 351 ~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 351 FFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred eCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 55542 234457999988 78999999999999887643
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=238.26 Aligned_cols=332 Identities=16% Similarity=0.187 Sum_probs=231.0
Q ss_pred HhcccceeccCCC-CcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHH
Q 041151 35 KEGKKIIFTNVGN-PHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVR 113 (463)
Q Consensus 35 ~~~~~~i~l~~G~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr 113 (463)
.+|++++||+.|+ ++. +. ++.+.+++.+++.........|....|..+++
T Consensus 30 ~~g~~~id~~~~~~~g~------------------------~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~ 80 (385)
T TIGR01825 30 VNGKEVINLSSNNYLGF------------------------AD-----HPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLH 80 (385)
T ss_pred ECCceEEEeeccCccCC------------------------CC-----CHHHHHHHHHHHHHcCCCCCccCcccCCcHHH
Confidence 3578899999886 342 33 78888888888775432345788888999999
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCceecCCCcccChHHHHH
Q 041151 114 KEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTWKRQQIGVLIINDLQ 180 (463)
Q Consensus 114 ~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~~~~~~~~d~~~~l~ 180 (463)
+++++++.+..|. ++.|++++| ++++..++.+++ ++||.|+++ .|.++ .....+|+ +.++
T Consensus 81 ~~l~~~l~~~~g~---~~~i~~~sG-~~a~~~a~~~~~-~~gd~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~d~-~~l~ 153 (385)
T TIGR01825 81 EELEEKLAKFKKT---EAALVFQSG-FNTNQGVLSALL-RKGDIVLSDELNHASIIDGLRLTKATK-KIYKHADM-DDLD 153 (385)
T ss_pred HHHHHHHHHHhCC---CcEEEECcH-HHHHHHHHHHhC-CCCCEEEEEccccHHHHHHHHhcCCce-EEeCCCCH-HHHH
Confidence 9999999887663 357888888 556778888887 899999986 12222 11235788 9999
Q ss_pred HHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCC
Q 041151 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFS 260 (463)
Q Consensus 181 ~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
+.+++... +++++|++++++||||.+.+ +++|.++|++||+++|+||+|..+.++. ........+ ++ .
T Consensus 154 ~~l~~~~~--~~~~~v~~~~v~~~tG~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~-~~~~~~~~~--~~----~ 221 (385)
T TIGR01825 154 RVLRENPS--YGKKLIVTDGVFSMDGDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGE-AGRGTVHHF--GL----E 221 (385)
T ss_pred HHHHhhcc--CCCeEEEEecCCcCCCCccC---HHHHHHHHHHhCCEEEEECcccccCcCC-CCCccHhhc--CC----C
Confidence 88875311 25788888889999999887 6778889999999999999998766521 111111111 11 2
Q ss_pred CCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h--cccCChHHHHHHHHhcCCCCCCCchHHHHHHH
Q 041151 261 KEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337 (463)
Q Consensus 261 ~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 337 (463)
.+++++++||||++ |++| ||++ +++++++.+..... . ....+.+.|.++.++++. ..+
T Consensus 222 -~~~~i~~~s~sK~~-~~~g---G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-----------~~~ 282 (385)
T TIGR01825 222 -DKVDIQVGTLSKAI-GVVG---GYAA---GHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDE-----------LQR 282 (385)
T ss_pred -cCCcEEEEeccHHh-hcCC---CEEe---cCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHH-----------Hhc
Confidence 34689999999998 6555 9998 68889888876542 2 122355667677666531 111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 338 SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
..+..+++.++++++.+.|+++ |+.+..++++++.+. +. ... ++.+++..+++ +||.+. +..|+
T Consensus 283 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~-~~--~~~----------~~~~~~~~L~~-~gi~v~-~~~~~ 346 (385)
T TIGR01825 283 SPELMERLWDNTRFFKAGLGKL-GYDTGGSETPITPVV-IG--DEK----------AAQEFSRRLFD-EGIFAQ-SIVFP 346 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEEEEE-EC--CHH----------HHHHHHHHHHH-CCcEEc-ccCCC
Confidence 1235666778899999999887 888877777654432 22 110 13455555555 599885 44454
Q ss_pred C-CCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 418 Q-KEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 418 ~-~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
. +.+..++|++++ .+++++++++++|++++++
T Consensus 347 ~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 347 TVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred CCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 3 234568999886 8999999999999998854
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-26 Score=230.42 Aligned_cols=346 Identities=14% Similarity=0.161 Sum_probs=236.3
Q ss_pred HHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCC
Q 041151 30 ASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGI 109 (463)
Q Consensus 30 ~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~ 109 (463)
.+++++.|.+++.|..|+|.. +++.+.. -..+.++..+++.. ....|++..|+
T Consensus 3 ~~~l~~~g~n~~~l~~~~v~i-------------------Dlltds~-----t~ams~~~~~a~~~---gd~~Y~~~~g~ 55 (431)
T cd00617 3 ERALKEAGYNVFLLRSEDVYI-------------------DLLTDSG-----TGAMSDYQWAAMML---GDEAYAGSKSF 55 (431)
T ss_pred HHHHHHcCCCEEeCCCCCcCC-------------------CCCCCCC-----cHHHHHHHHHHHHh---CCCccCCCCCH
Confidence 456788899999999999942 0111111 23555666666654 23569999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------cCcee------cC---
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------FHTTW------KR--- 168 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------~g~~~------~~--- 168 (463)
++|+++++++++ .+.+++|+|+++++..++.+++ +|||.|+.. .|+++ ..
T Consensus 56 ~~Leeaia~~~g--------~~~vv~t~~Gt~Al~la~~al~-~pGD~V~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~ 126 (431)
T cd00617 56 YDLEDAVQDLFG--------FKHIIPTHQGRGAENILFSILL-KPGRTVPSNMHFDTTRGHIEANGAVPVDLVIDEAHDA 126 (431)
T ss_pred HHHHHHHHHHHC--------CCeEEEcCCHHHHHHHHHHHhC-CCCCEEccCCcccchHHHHHhCCCEeEEEeccccccc
Confidence 999999999985 3689999999999999999998 999988421 56665 11
Q ss_pred -----CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHHhhhCCeEEEeccccccc--ccC
Q 041151 169 -----QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRFCYQENLVLLGDEVYQQN--IYQ 240 (463)
Q Consensus 169 -----~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~--~~~ 240 (463)
..+.+|+ +.|++.+++... .++++|++++||||+ |..+|.+++++|.++|++||++||+|+++... .|.
T Consensus 127 ~~~~pf~gniD~-e~Le~~I~~~~~--~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i 203 (431)
T cd00617 127 QELIPFKGNIDV-AKLEKLIDEVGA--ENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFI 203 (431)
T ss_pred ccccCCCCCcCH-HHHHHHhCcccC--CCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhh
Confidence 1244999 999999986200 138899999999998 99999999999999999999999999995421 120
Q ss_pred ----CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCce------eEEEEecCCChhHHHHHHhhh----h-h
Q 041151 241 ----DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR------GGYFEMTNIPPKTVDEIYKIA----S-I 305 (463)
Q Consensus 241 ----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R------~G~~~~~~~~~~~~~~l~~~~----~-~ 305 (463)
++....++..+ ++.+.|+||++ .++|+| .||+++ .+++++++++... . .
T Consensus 204 ~~r~~g~~~~si~ei-------------~~e~~s~sd~~-~mS~~K~~~~~~GG~i~~--~d~~l~~~~~~~~~~~~~~~ 267 (431)
T cd00617 204 KEREEGYRDKSIAEI-------------AREMFSYADGC-TMSAKKDGLVNIGGFLAL--RDDELYEEARQRVVLYEGFV 267 (431)
T ss_pred hcccccccCCCHHHH-------------HHHhhccCCEE-EEEeecCCCCccceEEEe--CcHHHHHHHHHhccccCCcc
Confidence 12333455443 23456777776 677776 678885 2346888887532 1 1
Q ss_pred cccCChHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc--CChh
Q 041151 306 ALSPNVPAQ-IFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR--LPPK 382 (463)
Q Consensus 306 ~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~--~~~~ 382 (463)
..+.....| .+++..|+... . .+.+.++++ ++++|.+.|.+. |+.+..|.|++++|+++. +|..
T Consensus 268 ~~gG~~~r~~~A~A~gL~e~~----------~-~~~l~~~~~-~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~~ 334 (431)
T cd00617 268 TYGGMAGRDMEALAQGLREAV----------E-EDYLRHRVE-QVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHI 334 (431)
T ss_pred ccccccHHHHHHHHHHHHhcc----------c-HHHHHHHHH-HHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhcCCC
Confidence 122222233 33333443110 0 112333344 558999999998 999999999999998875 1210
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCC-CCCCC--------CCcEEEEEec---CCcCcHHHHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSG-FGQKE--------GIFHLRTTIL---PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~-f~~~~--------~~~~lRis~~---~~~e~i~~~~~~l~~~l~~ 449 (463)
+..+ -++..++..++++.||.+.. |+. ++..+ .-..+||++. -+.++++...++|..+.++
T Consensus 335 -----~~~~-~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 335 -----PQEQ-FPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred -----Cccc-CcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 0000 14678888999999999764 441 22111 1257999999 4778999988888877765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=235.35 Aligned_cols=308 Identities=15% Similarity=0.151 Sum_probs=216.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC------CCCCCHHHHHHHHHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHHh---
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS------DSRGIPGVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCVI--- 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~------~~~g~~~lr~~ia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l~--- 151 (463)
|..+++++.+.+........... ....+.++|+.++++++ + ++++|++|+|+++++..++.++.
T Consensus 32 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~i~~~~~~t~~i~~~~~~~~~~~ 105 (401)
T PRK10874 32 PQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLN------APDAKNIVWTRGTTESINLVAQSYARPR 105 (401)
T ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcC------CCCCCEEEEECCHHHHHHHHHHHhhhcc
Confidence 78899999887765311111110 01224578888888886 5 68899999999999999999983
Q ss_pred cCCCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 152 RGEGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 152 ~~~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
.++||+|+++ .|+++ ...++.+|+ +.+++.+++ ++++|++++|+||||.+++
T Consensus 106 ~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~-~~l~~~i~~------~t~lv~i~~~~n~tG~~~~ 178 (401)
T PRK10874 106 LQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDV-DLLPELITP------RTRILALGQMSNVTGGCPD 178 (401)
T ss_pred CCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCH-HHHHHhcCc------CcEEEEEeCCcccccCcCC
Confidence 1689999997 45555 334567899 999999977 8999999999999999987
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
+++|+++|+++|+++++|++|+...+ +.++..+ +..+++.|++|.+ |++| +||+++
T Consensus 179 ---~~~i~~l~~~~g~~~ivD~a~~~g~~-----~~~~~~~-----------~~d~~~~s~~K~~-gp~G--~G~l~~-- 234 (401)
T PRK10874 179 ---LARAITLAHQAGMVVMVDGAQGAVHF-----PADVQAL-----------DIDFYAFSGHKLY-GPTG--IGVLYG-- 234 (401)
T ss_pred ---HHHHHHHHHHcCCEEEEECCcccccc-----cCCchhc-----------CCCEEEEeccccc-CCCc--cEEEEE--
Confidence 66778888899999999999975433 1222211 1347889999977 8888 699984
Q ss_pred CChhHHHHHHhhhh----------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIYKIAS----------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRR 348 (463)
Q Consensus 291 ~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (463)
++++++.+..... ...+++...+.++..+++ .+.+ ....+.+++.++.
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~-------~l~~--~g~~~~~~~~~~l 304 (401)
T PRK10874 235 -KSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALE-------WLAD--IDINQAESWSRSL 304 (401)
T ss_pred -chHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHH-------HHHH--hCHHHHHHHHHHH
Confidence 7888777643221 012344456666666653 1111 1123456777778
Q ss_pred HHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----CCCc
Q 041151 349 ARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-----EGIF 423 (463)
Q Consensus 349 ~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-----~~~~ 423 (463)
++++.+.|+++||+.+..+..+.++++.++ .. +..+ +...|.++||.+++|..|..+ ...+
T Consensus 305 ~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~--~~-----------~~~~-~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~ 370 (401)
T PRK10874 305 ATLAEDALAKLPGFRSFRCQDSSLLAFDFA--GV-----------HHSD-LVTLLAEYGIALRAGQHCAQPLLAALGVTG 370 (401)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCcEEEEEEC--Cc-----------CHHH-HHHHHHHCCcEEeccccchHHHHHHhCCCC
Confidence 889999999888988775555555553333 10 1333 446678899999999876421 1135
Q ss_pred EEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 424 HLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 424 ~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
++|+|++ ++++|++++++.|+++++.+
T Consensus 371 ~iRiS~~~~nt~edid~ll~al~~~~~~~ 399 (401)
T PRK10874 371 TLRASFAPYNTQSDVDALVNAVDRALELL 399 (401)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 8999999 89999999999999987753
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=230.20 Aligned_cols=331 Identities=14% Similarity=0.122 Sum_probs=213.8
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
+|+++|||+.|++. |. +. ++.+++++.+++..+......|....|...+++.
T Consensus 37 ~g~~~id~~~~~~~--g~---------------------~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~ 88 (385)
T PRK05958 37 DGRRMLNFASNDYL--GL---------------------AR-----HPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEA 88 (385)
T ss_pred CCceEEEeeCCCcc--cC---------------------CC-----CHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHH
Confidence 67889999988532 11 12 6889999998887642222234444455555555
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCceecCCCcccChHHHHHHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTWKRQQIGVLIINDLQQS 182 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~~~~~~~~d~~~~l~~~ 182 (463)
+++.+.+.++ .++.|++++| ++++..++..++ ++||.|+++ .|.++. .....|+ +.+++.
T Consensus 89 l~~~la~~~~---~~~~i~~~~g-~~~~~~~l~~~~-~~gd~V~~~~~~~~~~~~~~~~~g~~~~-~~~~~d~-~~l~~~ 161 (385)
T PRK05958 89 LEEELAEWFG---AERALLFSSG-YAANLAVLTALA-GKGDLIVSDKLNHASLIDGARLSRARVR-RYPHNDV-DALEAL 161 (385)
T ss_pred HHHHHHHHhC---CCcEEEECcH-HHHHHHHHHHhC-CCCCEEEEeCccCHHHHHHHHhcCCceE-EeCCCCH-HHHHHH
Confidence 5555555444 2345555554 566667778887 899999996 233331 0112478 999998
Q ss_pred HHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCC
Q 041151 183 VAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKE 262 (463)
Q Consensus 183 l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (463)
+++. .+++.++++.+++||||...+ +++|+++|++||+++|+||+|..+.++... . ..... ..+ +..
T Consensus 162 i~~~---~~~~~lvi~~~~~~~~G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g-~-~~~~~-~~~----~~~ 228 (385)
T PRK05958 162 LAKW---RAGRALIVTESVFSMDGDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQG-R-GLAAE-AGL----AGE 228 (385)
T ss_pred HHhc---cCCCeEEEEEecccCCCCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCC-C-chHHh-hCC----CCC
Confidence 8752 012455555588999998866 778888999999999999999876552111 1 11111 112 333
Q ss_pred ceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h--cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 041151 263 VQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESK 339 (463)
Q Consensus 263 ~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (463)
.++|++.|+||++ |++| ||++ +++++++.+.+... . ..+.+...+.++.++++ .....+
T Consensus 229 ~~~i~~~s~sK~~-~~~G---g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~-----------~~~~~~ 290 (385)
T PRK05958 229 PDVILVGTLGKAL-GSSG---AAVL---GSETLIDYLINRARPFIFTTALPPAQAAAARAALR-----------ILRREP 290 (385)
T ss_pred CceEEEEechhhc-ccCC---cEEE---cCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHH-----------HHhcCH
Confidence 4689999999999 7666 8887 58888888765432 1 22334444444445543 111113
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC
Q 041151 340 GILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK 419 (463)
Q Consensus 340 ~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~ 419 (463)
.+++++.++++.+.+.|++. |+++..+.++++ |+.+ +... ++.++... |.++||.+.++..+..+
T Consensus 291 ~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~-~~~~--~~~~----------~~~~~~~~-l~~~gI~v~~~~~~~~~ 355 (385)
T PRK05958 291 ERRERLAALIARLRAGLRAL-GFQLMDSQSAIQ-PLIV--GDNE----------RALALAAA-LQEQGFWVGAIRPPTVP 355 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEE-EEEe--CCHH----------HHHHHHHH-HHHCCceEecccCCCCC
Confidence 56788999999999999987 777777766654 5333 3211 13455444 56789999986655433
Q ss_pred CCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 420 EGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 420 ~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
.+.+++||+++ .+++++++++++|++++
T Consensus 356 ~~~~~lRis~~~~~~~~~i~~~l~~l~~~~ 385 (385)
T PRK05958 356 AGTSRLRITLTAAHTEADIDRLLEALAEAL 385 (385)
T ss_pred CCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence 34568999998 68999999999998753
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-26 Score=214.27 Aligned_cols=356 Identities=15% Similarity=0.152 Sum_probs=263.2
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcc-cceeccCCCCc-CCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGK-KIIFTNVGNPH-ALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~l~~G~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++...++++|- .....++++++ +.|||++|.-. ..|.. |. -+.+.++-+
T Consensus 3 ~~i~~~p~DpIl---gL~e~f~~D~R~~KVNLgIGvY~de~Gk~--------------------pv-----l~aV~~Ae~ 54 (396)
T COG1448 3 EKIEAAPADPIL---GLKEAFKADPRPNKVNLGIGVYKDEDGKT--------------------PV-----LRAVKKAEK 54 (396)
T ss_pred cccccCCCCchh---HHHHHHhcCCCcCeeeeeeeeeeCCCCCc--------------------ch-----hHHHHHHHH
Confidence 344455566544 44555565554 37999999533 21211 22 344444444
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC---CCCCcE--EEcCCcHHHHHHHHHHHhc-CCCCEEEEc---
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP---SDPELI--FLTDGASKGVMQTLNCVIR-GEGDGVVLL--- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~---~~~~~i--~~t~G~~~al~~~~~~l~~-~~gd~Vlvp--- 161 (463)
..+.. .....|-+..|.+.+++++++.+- |.+ +..+.| +-|.|++.|+......+.+ .|..+|+++
T Consensus 55 ~l~~~--~~~k~Yl~i~G~~~f~~~~~~llF---G~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~Pt 129 (396)
T COG1448 55 RLLEQ--EKTKNYLPIEGLPEFLEAVQKLLF---GADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPT 129 (396)
T ss_pred Hhhcc--ccccccCCcCCcHHHHHHHHHHhc---CCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCC
Confidence 44444 266899999999999999999973 433 344433 4588999999999888752 466778887
Q ss_pred ----------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 ----------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 ----------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|.++ .....++|+ +.+...|+.. +...+|++. .+|||||..++.+++++|+++.++.
T Consensus 130 W~NH~~If~~aGl~v~~Y~Yyd~~~~~~df-~~mla~L~~a----~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r 204 (396)
T COG1448 130 WPNHKAIFEAAGLEVETYPYYDAETKGLDF-DGMLADLKTA----PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER 204 (396)
T ss_pred cHhHHHHHHhcCCceeeeeccccccccccH-HHHHHHHHhC----CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 77777 455667999 9999999874 244666676 7799999999999999999999999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh---
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK--- 301 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~--- 301 (463)
+.+.+.|-+|..|.-+-+.....+..+.... ..++++.||||.| |+.|-|+|.+.+-..+.+..+++..
T Consensus 205 ~lip~~D~AYQGF~~GleeDa~~lR~~a~~~-------~~~lva~S~SKnf-gLYgERVGa~~vva~~~~~a~~v~sqlk 276 (396)
T COG1448 205 GLIPFFDIAYQGFADGLEEDAYALRLFAEVG-------PELLVASSFSKNF-GLYGERVGALSVVAEDAEEADRVLSQLK 276 (396)
T ss_pred CCeeeeehhhhhhccchHHHHHHHHHHHHhC-------CcEEEEehhhhhh-hhhhhccceeEEEeCCHHHHHHHHHHHH
Confidence 9999999999986432222222233332221 2389999999999 9999999999776566666665532
Q ss_pred -h-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--CcccccCCceeEEeee
Q 041151 302 -I-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC-R--NVVCNFTEGAMYSFPQ 376 (463)
Q Consensus 302 -~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-p--g~~~~~~~g~~~~~~~ 376 (463)
. +...++++.....+++..|+++ +....|..++..++.++.++|..|.+.|++. + .+.++..+.|||.+..
T Consensus 277 ~~iR~~ySnPP~~Ga~vva~IL~~p----~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~G 352 (396)
T COG1448 277 AIIRTNYSNPPAHGAAVVATILNNP----ELRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTG 352 (396)
T ss_pred HHHHhccCCCchhhHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCC
Confidence 2 2356788888999999999854 5677889999999999999999999999984 2 3888889999999843
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKF 446 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~ 446 (463)
+ +.+.+..+.+++||++.. .| |||++ .++..++.+.+.+.++
T Consensus 353 l-----------------s~~QV~rLree~~IY~v~-------sG----Ri~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 353 L-----------------SPEQVDRLREEFGIYLVA-------SG----RINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred C-----------------CHHHHHHHHHhccEEEec-------CC----eeeeccCChhhHHHHHHHHHhh
Confidence 3 344578889999999876 23 99999 8889999999998875
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=235.49 Aligned_cols=312 Identities=15% Similarity=0.124 Sum_probs=213.0
Q ss_pred cHHHHHHHHHHhhhcCCC----CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCC
Q 041151 82 PADAIARAKHYLSLTSGG----LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd 156 (463)
++.+++++.+++..+... ...|+....+.+|++++|++++ .++.|++++| ++++..++..+.+ .+|+
T Consensus 62 ~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g-------~~~~i~~~sG-~~a~~~~i~~l~~~~~g~ 133 (410)
T PRK13392 62 HPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG-------KESALLFTSG-YVSNDAALSTLGKLLPGC 133 (410)
T ss_pred CHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC-------CCCEEEECcH-HHHHHHHHHHHhcCCCCC
Confidence 889999999888764211 1223332235688888888875 2467888877 5677777777751 3889
Q ss_pred EEEEc-------------cCcee--cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 157 GVVLL-------------FHTTW--KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 157 ~Vlvp-------------~g~~~--~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
.|+++ .|.++ ... -|. +.+++.++... .+++++|++++|+||||.+++ +++|.++|
T Consensus 134 ~vi~~~~~h~s~~~~~~~~g~~~~~~~~---~d~-~~l~~~l~~~~--~~~t~~v~i~~~~n~tG~~~~---l~~i~~l~ 204 (410)
T PRK13392 134 VILSDALNHASMIEGIRRSGAEKQVFRH---NDL-ADLEEQLASVD--PDRPKLIAFESVYSMDGDIAP---IEAICDLA 204 (410)
T ss_pred EEEEehhhhHHHHHHHHHcCCeEEEEeC---CCH-HHHHHHHHhcc--CCCCEEEEEeCCCCCCccccc---HHHHHHHH
Confidence 88886 33333 111 245 66776665321 126899999999999999988 77777888
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+++++++|+||+|+...++ ... ..+... .++ .+ ...|+++||||+| |++| ||++ +++++++.+++
T Consensus 205 ~~~~~~livDea~~~g~~g-~~g-~g~~~~-~~~----~~-~~div~~tlsK~~-g~~G---G~~~---~~~~~~~~l~~ 269 (410)
T PRK13392 205 DRYNALTYVDEVHAVGLYG-ARG-GGIAER-DGL----MD-RIDMIQGTLAKAF-GCLG---GYIA---ASADLIDFVRS 269 (410)
T ss_pred HHcCCEEEEECCccccCcC-CCC-Cchhhh-ccC----CC-CCcEEEEEChHhh-hccc---chhh---cCHHHHHHHHH
Confidence 8999999999999965552 111 122111 111 11 1238889999999 7777 8998 68999998887
Q ss_pred hhh-h--cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc
Q 041151 302 IAS-I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR 378 (463)
Q Consensus 302 ~~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~ 378 (463)
... . +...+++.+.++.++|+ ...+....+++++++++.+.+.|++. |+.+.+++++++.. .+.
T Consensus 270 ~~~~~~~s~~~~~~~~~a~~aaL~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~i-~~~ 336 (410)
T PRK13392 270 FAPGFIFTTALPPAVAAGATAAIR-----------HLKTSQTERDAHQDRVAALKAKLNAN-GIPVMPSPSHIVPV-MVG 336 (410)
T ss_pred hCcchhccCcCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEEEE-EeC
Confidence 664 2 23345567777777764 22223345677899999999999987 88887777776532 232
Q ss_pred CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 379 LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+. +..++...+++++||.+.++.....+.+..++||++. .+++|+++++++|+++.+++
T Consensus 337 ~~~------------~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 337 DPT------------LCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CHH------------HHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 111 1345555666788999999765544445568999997 78899999999999887654
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=231.16 Aligned_cols=305 Identities=16% Similarity=0.142 Sum_probs=213.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC-------CCCHHHHHHHHHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHHh--
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS-------RGIPGVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCVI-- 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~-------~g~~~lr~~ia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l~-- 151 (463)
|+.+++++.+.+...... ..++.. ....++|+.++++++ . ++++|++|+|+++++..++.++.
T Consensus 29 p~~v~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~i~~t~g~t~~l~~~~~~~~~~ 101 (398)
T TIGR03392 29 PQAVIDATQQFYRLSSGT-VHRSQHQQAQSLTARYELARQQVARFLN------APDAENIVWTRGTTESINLVAQSYARP 101 (398)
T ss_pred CHHHHHHHHHHHHhcCCC-CCCcccHHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCChHHHHHHHHHHhhhc
Confidence 888999998877542111 112221 124568899999886 4 46899999999999999999872
Q ss_pred -cCCCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 152 -RGEGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 152 -~~~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
.++||+|+++ .|+++ ...++.+|+ +.+++++++ ++++|++++|+||||.++
T Consensus 102 ~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~-~~l~~~i~~------~t~lv~i~~~~n~tG~~~ 174 (398)
T TIGR03392 102 RLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDI-RQLPELLTP------RTRILALGQMSNVTGGCP 174 (398)
T ss_pred cCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCH-HHHHHHhcc------CceEEEEECccccccccC
Confidence 1689999996 35555 233466899 999999987 899999999999999998
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+ +++|+++|+++|+++++|++|+...+ ...+... + ..+++.|++|.+ |++| +||+++
T Consensus 175 ~---~~~i~~~~~~~~~~~ivD~a~~~~~~-----~~~~~~~--------~---~d~~~~s~~K~~-gp~G--~G~l~~- 231 (398)
T TIGR03392 175 D---LARAITLAHQYGAVVVVDGAQGVVHG-----PPDVQAL--------D---IDFYAFSGHKLY-GPTG--IGVLYG- 231 (398)
T ss_pred C---HHHHHHHHHHcCCEEEEEhhhhcCCC-----CCChhhc--------C---CCEEEEeccccc-CCCc--eEEEEE-
Confidence 8 66788889999999999999975433 1222221 1 236788999977 8777 899984
Q ss_pred CCChhHHHHHHhhhh----------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHH
Q 041151 290 NIPPKTVDEIYKIAS----------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESL 345 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~ 345 (463)
++++++.+..... ...+++.....++.++++ ++.+ .++++++.
T Consensus 232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~-----------~l~~~g~~~i~~~~ 298 (398)
T TIGR03392 232 --KTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALE-----------WLTDIDIAAAEAWS 298 (398)
T ss_pred --cHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHH-----------HHHHhCHHHHHHHH
Confidence 7777776642211 012333445555555542 1111 33566777
Q ss_pred HHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----C
Q 041151 346 RRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-----E 420 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-----~ 420 (463)
.+.++.+.+.|+++||+.+..+..+.++++.++ .. +..+ +...|.++||.+++|..|... .
T Consensus 299 ~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~--~~-----------~~~~-l~~~L~~~gI~v~~g~~~~~~~~~~~g 364 (398)
T TIGR03392 299 VSLADLAEERLAQLPGFRSFRCPGSSLLAFDFA--GV-----------HHSD-LAALLAESGIALRAGQHCAQPLMAALG 364 (398)
T ss_pred HHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeC--Cc-----------CHHH-HHHHHHhCCEEEecCccchHHHHHHhC
Confidence 788889999999888888765444555553332 10 1334 445577899999999876421 1
Q ss_pred CCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 421 GIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 421 ~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
..+++|+|+. ++++|++++++.|+++++++
T Consensus 365 ~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~ 396 (398)
T TIGR03392 365 VSGTLRASFAPYNTQQDVDALVDAVGAALELL 396 (398)
T ss_pred CCCEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 1358999998 89999999999999887753
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=225.43 Aligned_cols=294 Identities=11% Similarity=0.080 Sum_probs=201.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
++.+++++.++.. ....|++..+..+|++++|++++ + +.+++++|+++++..++.+++ ++||+|+++
T Consensus 13 ~~~~~~a~~~~~~----~~~~Y~~~~~~~~L~~~la~~~g------~--~~~~v~~~g~~a~~~~l~~~~-~~gd~vi~~ 79 (333)
T PRK10534 13 SRAMLEAMMAAPV----GDDVYGDDPTVNALQDYAAELSG------K--EAALFLPTGTQANLVALLSHC-ERGEEYIVG 79 (333)
T ss_pred CHHHHHHHHhccC----CCcccCCCHHHHHHHHHHHHHhC------C--CeEEEeCchHHHHHHHHHHhc-CCCCeeEEe
Confidence 7888888766443 33578666678999999999985 3 344677777888888888887 899998874
Q ss_pred ---------cC-------cee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 162 ---------FH-------TTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 162 ---------~g-------~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
.+ .++ ...++.+|+ ++|++++.+......++++|++|||+ ||.+++.+++++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~~~l~~i~~~~ 156 (333)
T PRK10534 80 QAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPL-DKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPREYLKQAWEFT 156 (333)
T ss_pred chhhhhHhcCCchHHhcCceEEeecCCCCCCCCH-HHHHHhhcccCcCcccceEEEEecCC--CCeecCHHHHHHHHHHH
Confidence 11 122 245688999 99999886410001147899999776 59999999999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeE-EEEecCCChhHHHHHH
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG-YFEMTNIPPKTVDEIY 300 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G-~~~~~~~~~~~~~~l~ 300 (463)
++++++|++||+|..... ... ..+...+. .. . +++ +.||||.+ |++ +| |++ +++++++.+.
T Consensus 157 ~~~~~~lvvDEA~~~~~~-~~~-~~~~~~~~-~~----~--~~~--~~s~SK~~-~~~---~G~~~~---~~~~~i~~~~ 218 (333)
T PRK10534 157 RERNLALHVDGARIFNAV-VAY-GCELKEIT-QY----C--DSF--TICLSKGL-GTP---VGSLLV---GNRDYIKRAR 218 (333)
T ss_pred HHcCCeEEeeHHHHHHHH-HHc-CCCHHHHH-hc----C--CEE--EEEeEcCC-CCc---ccceEE---cCHHHHHHHH
Confidence 999999999999873211 000 11222221 11 1 122 34899988 553 67 576 7999999998
Q ss_pred hhhh-hc--ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeec
Q 041151 301 KIAS-IA--LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQI 377 (463)
Q Consensus 301 ~~~~-~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~ 377 (463)
++.. .. +..+.+.|.++...++ +.. +..++..++++++.+.|+++ |+.+.+| +++|+|+++
T Consensus 219 ~~~~~~~~~~~~~~~~~a~~~~~l~----------~~~----~~~~~~~~~r~~l~~~L~~~-g~~~~~~-~~nfv~~~~ 282 (333)
T PRK10534 219 RWRKMTGGGMRQAGILAAAGLYALK----------HNV----ARLQEDHDNAAWLAEQLREA-GADVMRQ-DTNMLFVRV 282 (333)
T ss_pred HHHHHhCCchhhHHHHHHHHHHHHH----------hhH----HHHHHHHHHHHHHHHHHHhC-CCccCCC-CceEEEEEC
Confidence 8775 22 2223345555554442 111 12223445678999999998 8888777 467888655
Q ss_pred cCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 378 RLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
+ .. +...+.++|.++||.++|+. ++|++.. .+.+++++++++|++++.
T Consensus 283 ~--~~------------~~~~~~~~l~~~gi~v~~~~---------~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 283 G--EE------------QAAALGEYMRERNVLINASP---------IVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred C--ch------------hHHHHHHHHHHcCeeecCCc---------eEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 4 11 22334678889999998863 4788775 789999999999998764
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=231.63 Aligned_cols=299 Identities=13% Similarity=0.116 Sum_probs=203.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG------ 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g------ 155 (463)
++.+.+++.+++.... +....+..+++.++++++.+.. ..+++++|+|+++++..+++.+. ..+
T Consensus 57 ~p~v~~a~~~~~~~~~-----~~~~~~~~~~~~~la~~l~~~~----~~~~v~~~~gg~eA~~~al~~a~-~~~~~~~~~ 126 (396)
T PRK02627 57 HPKLVEAIQEQAAKLI-----HTSNLYYIEPQEELAEKLVELS----GMDKVFFCNSGAEANEAAIKLAR-KYGHKKGIE 126 (396)
T ss_pred CHHHHHHHHHHHhhcc-----ccccccCCHHHHHHHHHHHhhc----CCCEEEECCCcHHHHHHHHHHHH-HHhcccCCC
Confidence 5788888888877521 1111223578889999887663 34899999999999999999775 333
Q ss_pred -CEEEEc----cCcee-----c----------CCCccc------ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-cC
Q 041151 156 -DGVVLL----FHTTW-----K----------RQQIGV------LIINDLQQSVAQARSKGITVRAMVIINPGNPTG-QC 208 (463)
Q Consensus 156 -d~Vlvp----~g~~~-----~----------~~~~~~------d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG-~~ 208 (463)
+.|+++ +|... . ....++ |+ +.+++.+.+ ++++|+++.++||+| .+
T Consensus 127 ~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~vii~p~~~~~G~~~ 199 (396)
T PRK02627 127 KPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDI-EALKAAITD------KTAAVMLEPIQGEGGVNP 199 (396)
T ss_pred CCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCH-HHHHHhcCC------CeEEEEEecccCCCCCcc
Confidence 556665 33222 0 001223 88 999998865 799999998899999 68
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
++.+.+++|.++|++|++++|+||+|..+.+. +. ..++... ++ .. . +.||||.+ + +|+|+||++
T Consensus 200 ~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~-g~-~~~~~~~--~~----~p--d---i~t~sK~~-~-~G~rig~~~- 263 (396)
T PRK02627 200 ADKEYLQALRELCDENGILLILDEVQTGMGRT-GK-LFAYQHY--GI----EP--D---IMTLAKGL-G-GGVPIGAVL- 263 (396)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEechhcCCCcc-Cc-eeeehhc--CC----CC--C---EEEEcchh-h-CCcccEEEE-
Confidence 89999999999999999999999999986552 21 1121111 11 12 1 34799999 7 899999999
Q ss_pred cCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcc
Q 041151 289 TNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CRNVV 363 (463)
Q Consensus 289 ~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~pg~~ 363 (463)
+++++++.+..... .+++.+++.|.++.++++... . ++..++++++.+.+.+.|.+ +|.+.
T Consensus 264 --~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~-----------~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 329 (396)
T PRK02627 264 --AKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIE-----------E-EGLLENAAEVGEYLRAKLRELLEKYPGIK 329 (396)
T ss_pred --EcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------h-ccHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 58888888865432 567889999999988875211 1 12233344444444444433 33333
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
...+ .|.++|+.+. . +..+++..++ ++||.+.|+. .+++|++++ .++++++++++
T Consensus 330 ~~~~-~g~~~~i~~~--~------------~~~~~~~~l~-~~Gv~v~~~~-------~~~lRi~~~~~~~~~~i~~~~~ 386 (396)
T PRK02627 330 EVRG-LGLMIGIELD--R------------PAAEIVKKAL-EKGLLINVTG-------DNVLRLLPPLIISKEEIDEAVD 386 (396)
T ss_pred eecc-CcEEEEEEec--C------------cHHHHHHHHH-HCCeEEeecC-------CCEEEEECCcccCHHHHHHHHH
Confidence 3333 4667785542 1 2445555544 5699999853 237999875 78999999999
Q ss_pred HHHHHHHHH
Q 041151 442 SFKKFNDEF 450 (463)
Q Consensus 442 ~l~~~l~~~ 450 (463)
+|+++++++
T Consensus 387 ~l~~~l~~~ 395 (396)
T PRK02627 387 RLEEVLKEL 395 (396)
T ss_pred HHHHHHHhh
Confidence 999988654
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=232.58 Aligned_cols=309 Identities=15% Similarity=0.156 Sum_probs=204.8
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCce
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTT 165 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~ 165 (463)
....|+...++.+|++++|++++ .++.|++++| ..+...++.+++ ++||.|+++ .|++
T Consensus 138 sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~~G-~~an~~~i~al~-~~Gd~Vi~d~~~h~s~~~~~~~~Ga~ 208 (489)
T PLN02483 138 SRVDGGTTKLHRELEELVARFVG-------KPAAIVFGMG-YATNSTIIPALI-GKGGLIISDSLNHNSIVNGARGSGAT 208 (489)
T ss_pred cccccCCcHHHHHHHHHHHHHhC-------CCcEEEECCH-HHHHHHHHHHhC-CCCCEEEEcchhhHHHHHHHHHcCCe
Confidence 44558877889999999999996 3567888777 445667888887 999999997 5555
Q ss_pred e---cCCCcccChHHHHHHHHHHHHhcC------CceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccc
Q 041151 166 W---KRQQIGVLIINDLQQSVAQARSKG------ITVRAMVII-NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235 (463)
Q Consensus 166 ~---~~~~~~~d~~~~l~~~l~~~~~~~------~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~ 235 (463)
+ +.+ |. +.+++.+++....+ +..++++++ ...|++|.+.+ +++|+++|++|+++||+||+|+
T Consensus 209 v~~~~~~----d~-~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s 280 (489)
T PLN02483 209 IRVFQHN----TP-SHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHS 280 (489)
T ss_pred EEEEeCC----CH-HHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCc
Confidence 5 222 55 77777766421110 123666666 45799999876 7888889999999999999998
Q ss_pred ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h--c-ccCCh
Q 041151 236 QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I--A-LSPNV 311 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~--~-~~~~~ 311 (463)
...++ ... ..+... ++. +..+.+|+++||||+| |++| ||++ +++++++.+..... . . ..++.
T Consensus 281 ~g~~G-~~G-~g~~~~---~~v--~~~~~dI~~~SfSKs~-g~~G---G~i~---~~~~li~~l~~~~~~~~~~~~~~p~ 346 (489)
T PLN02483 281 IGAVG-KTG-RGVCEL---LGV--DPADVDIMMGTFTKSF-GSCG---GYIA---GSKELIQYLKRTCPAHLYATSMSPP 346 (489)
T ss_pred cCccC-CCC-CchHHh---cCC--CcccCcEEEEecchhc-ccCc---eEEE---cCHHHHHHHHHhCccccccCCcCHH
Confidence 54442 111 111111 111 2234679999999999 7666 9998 69999999987642 1 1 22333
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcC
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
..|. +.+.|+.....++ .....+++++++++++++.+.|+++ |+.+..+.+++.+|+.+..+..
T Consensus 347 ~~~~-~~aaL~~l~~~~g-----~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~~~--------- 410 (489)
T PLN02483 347 AVQQ-VISAIKVILGEDG-----TNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNPAK--------- 410 (489)
T ss_pred HHHH-HHHHHHHHHhCcc-----ccchHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCHHH---------
Confidence 3443 3333310000000 0112234678999999999999998 8877766666666543332221
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCC-CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhccccC
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGF-GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYEDYRG 459 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f-~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~~~~~ 459 (463)
...++..++ ++||.+.| ..| ..+...+++|++++ ++++++++++++|+++++.+.-+|.....
T Consensus 411 ---~~~~~~~Ll-~~GI~v~~-~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~~~~~~~~~ 476 (489)
T PLN02483 411 ---IPAFSRECL-KQNVAVVV-VGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVGIKYFPAEP 476 (489)
T ss_pred ---HHHHHHHHH-HCCcEEee-eCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCceeccCCC
Confidence 235555554 67999997 555 33334468999998 78999999999999999888777655443
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=221.36 Aligned_cols=305 Identities=15% Similarity=0.153 Sum_probs=193.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-CCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-EGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-~gd~Vlv 160 (463)
++.+.+++...... .....|++. ..+||++++++++ . +.+++++++++++..++.+++ + +||+|++
T Consensus 19 ~~~~~~a~~~~~~~--~~~~~~~~~--~~~l~~~la~~~~------~--~~~~~~~~Gs~a~~~~l~~~~-~~~gd~Vl~ 85 (353)
T PLN02721 19 TDAMRAAMANAEVD--DDVLGYDPT--ALRLEEEMAKIFG------K--EAALFVPSGTMGNLISVLVHC-DVRGSEVIL 85 (353)
T ss_pred CHHHHHHHHhccCC--CcccCCCHH--HHHHHHHHHHHhC------C--ceeEEecCccHHHHHHHHHHc-cCCCCeEEE
Confidence 56666776543111 123445443 6899999999986 2 234555555666667777776 6 9999999
Q ss_pred c----------------cCcee---c-CCCcccChHHHHHHHHHHHHhcC-CceeEEEEEC-CCCCCccCCCHHHHHHHH
Q 041151 161 L----------------FHTTW---K-RQQIGVLIINDLQQSVAQARSKG-ITVRAMVIIN-PGNPTGQCLSEANLREIL 218 (463)
Q Consensus 161 p----------------~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~-~~~~~i~l~~-p~NPtG~~~s~~~l~~l~ 218 (463)
+ .|.++ + ...+.+|+ +.+++.+++....+ +++++|++++ ||||||.+++.+++++|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~ 164 (353)
T PLN02721 86 GDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDL-DAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVG 164 (353)
T ss_pred cCccceehhcccchhhhcCceeEecCCCcCCCcCH-HHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHH
Confidence 7 12233 2 34466899 99999997321111 2789999985 689999999999999999
Q ss_pred HHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 219 RFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
++|+++|++||+|++|....+ .....+...+.... ..++.|+||++ +. ++||+++ +++++++.
T Consensus 165 ~l~~~~g~~livD~a~~~~~~--~~~~~~~~~~~~~~---------d~~~~s~sK~l-~~---~~G~~~~--~~~~~~~~ 227 (353)
T PLN02721 165 ELAKRHGLKLHIDGARIFNAS--VALGVPVHRLVKAA---------DSVSVCLSKGL-GA---PVGSVIV--GSKSFIRK 227 (353)
T ss_pred HHHHHcCCEEEEEchhhhcch--hhhCCCHHHHhhhC---------CEEEEeccccc-CC---ceeeEEe--cCHHHHHh
Confidence 999999999999999864221 00111222221111 13455799998 42 3676443 68999888
Q ss_pred HHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc--ccCCceeEEee
Q 041151 299 IYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC--NFTEGAMYSFP 375 (463)
Q Consensus 299 l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~--~~~~g~~~~~~ 375 (463)
+..... ...+.+.+.+.++..+. .++.+.+ . .++..++++.+.+.|++++|+.+ ..+.+ .++|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~---~-~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~ 294 (353)
T PLN02721 228 AKRLRKTLGGGMRQVGVLAAAALV--------ALQENVP---K-LEDDHKKAKLLAEGLNQIKGLRVNVAAVET-NIVYF 294 (353)
T ss_pred HHHHHHhcCCCeehhHHHHHHHHH--------HHHHHHH---H-HHHHHHHHHHHHHHHHhCCCcEEecCCccc-eEEEE
Confidence 877665 22233333333332221 1122222 2 23335667889999998878754 34444 45775
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
++..... .+...+ .+.|.++||.+.|+. ..++|++++ .+++|+++++++|++++.
T Consensus 295 ~~~~~~~----------~~~~~~-~~~L~~~gi~v~~~~-------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 295 DITDGSR----------ITAEKL-CKSLEEHGVLLMPGN-------SSRIRVVTHHQISDSDVQYTLSCFQQAAL 351 (353)
T ss_pred EccCCcc----------ccHHHH-HHHHHhCCcEEecCC-------CceEEEEecCcCCHHHHHHHHHHHHHHhh
Confidence 5431100 023444 445668999999963 237999997 788999999999998764
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=224.03 Aligned_cols=304 Identities=18% Similarity=0.222 Sum_probs=211.0
Q ss_pred cHHHHHHHHHHhhhcCCCCC--ccC----CCCCCHHHHHHHHHHHHHhcCCCCC-CCcEEEcCCcHHHHHHHHHHH----
Q 041151 82 PADAIARAKHYLSLTSGGLG--AYS----DSRGIPGVRKEVAEFIERRDGYPSD-PELIFLTDGASKGVMQTLNCV---- 150 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~--~Y~----~~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l---- 150 (463)
|..+++++.+.+........ .+. ......++|+.++++++ .+ +++|++|+|+++++..++.++
T Consensus 31 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~------~~~~~~v~~~~g~t~~l~~~~~~~~~~~ 104 (403)
T TIGR01979 31 PQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFIN------AASDEEIVFTRGTTESINLVAYSWGDSN 104 (403)
T ss_pred CHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------cCCCCeEEEeCCHHHHHHHHHHHhhhhc
Confidence 78889988877654211111 110 11245688899999886 45 679999999999999998875
Q ss_pred hcCCCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 151 IRGEGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 151 ~~~~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
. ++||.|+++ .|+++ ...++.+|+ +.+++.+.+ ++++|++++|+||||.++
T Consensus 105 ~-~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~l~~~i~~------~~~lv~~~~~~~~tG~~~ 176 (403)
T TIGR01979 105 L-KAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDL-DDLEKLLTE------KTKLVAITHVSNVLGTVN 176 (403)
T ss_pred C-CCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCH-HHHHHHhcc------CCeEEEEEcccccccccC
Confidence 4 789999996 35554 334567899 999999987 899999999999999999
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+ +++|.++|+++|+++++|++|+.... +.++.. .+..+++.|++|.+ |++| +|++++
T Consensus 177 ~---~~~i~~~~~~~~~~~ivD~a~~~g~~-----~~~~~~-----------~~~d~~~~s~~K~~-gp~G--~g~l~~- 233 (403)
T TIGR01979 177 P---VEEIAKLAHQVGAKVLVDGAQAVPHM-----PVDVQA-----------LDCDFYVFSGHKMY-GPTG--IGVLYG- 233 (403)
T ss_pred C---HHHHHHHHHHcCCEEEEEchhhcCcc-----ccCccc-----------cCCCEEEEeccccc-CCCC--ceEEEE-
Confidence 8 66778888899999999999975321 122211 12458899999987 8777 899985
Q ss_pred CCChhHHHHHHhhhh----------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHH
Q 041151 290 NIPPKTVDEIYKIAS----------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESL 345 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~ 345 (463)
++++++.+..... ...+++.....++..+++ +..+ .+.++++.
T Consensus 234 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~-----------~~~~~g~~~~~~~~ 300 (403)
T TIGR01979 234 --KEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAID-----------YLEAIGLENIEAHE 300 (403)
T ss_pred --chHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHH-----------HHHHhCHHHHHHHH
Confidence 7777666532110 011233444445554442 2222 45667888
Q ss_pred HHHHHHHHHHhhcCCCcccccCC-----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-
Q 041151 346 RRRARMMTDGFNSCRNVVCNFTE-----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK- 419 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~- 419 (463)
.+.++.+.+.|++++|+++..|. ++++.+ .++.. +..+ +.+.|+++||.+++|..+..+
T Consensus 301 ~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~---~~~~~-----------~~~~-~~~~L~~~gI~v~~g~~~~~~~ 365 (403)
T TIGR01979 301 HELTAYALERLGEIPGLRIYGPRDAEDRGGIISF---NVEGV-----------HPHD-VGTILDEEGIAVRSGHHCAQPL 365 (403)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCccccCceEEE---EeCCc-----------CHHH-HHHHHhhCCEEEcchhhhhHHH
Confidence 88899999999988888887654 455444 22211 1233 456788999999987643210
Q ss_pred ----CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 420 ----EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 420 ----~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
...+++|||++ ++++|++++++.|+++++.+
T Consensus 366 ~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 366 MRRFGVPATCRASFYIYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 01348999999 78899999999998877653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-25 Score=217.32 Aligned_cols=310 Identities=17% Similarity=0.167 Sum_probs=201.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCC----HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGI----PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
|+.+++++.+.+.+.......|....|. .++++.+++++ |. ++. ++++++++++..++.+++ ++||.
T Consensus 17 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~---~~~-iv~~sg~~a~~~~~~~~~-~~gd~ 87 (349)
T cd06454 17 HPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFH----GK---EAA-LVFSSGYAANDGVLSTLA-GKGDL 87 (349)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHh----CC---CCE-EEeccHHHHHHHHHHHhc-CCCCE
Confidence 7889999999888642222233332333 45566666555 32 234 445555778888888887 89999
Q ss_pred EEEc-------------cCceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 158 VVLL-------------FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 158 Vlvp-------------~g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
|+++ .|.++.. -...|. +.+++.+++.. ...+++++++++|+||||...+ +++|+++|+++
T Consensus 88 Vl~~~~~~~~~~~~~~~~g~~~~~-~~~~~~-~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~ 161 (349)
T cd06454 88 IISDSLNHASIIDGIRLSGAKKRI-FKHNDM-EDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAP---LPELVDLAKKY 161 (349)
T ss_pred EEEehhhhHHHHHHHHHcCCceEE-ecCCCH-HHHHHHHHHhh-ccCCCeEEEEeccccCCCCccC---HHHHHHHHHHc
Confidence 9997 3444410 113577 88888887531 0125788888899999999876 67888889999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
++++|+|++|+...+..... .+..+ . . ...+.+++++|+||++ +++| ||++ +++++++.+.....
T Consensus 162 ~~~livD~a~~~g~~~~~~~--~~~~~-~-~----~~~~~~i~~~s~sK~~-~~~g---G~i~---~~~~~~~~~~~~~~ 226 (349)
T cd06454 162 GAILFVDEAHSVGVYGPHGR--GVEEF-G-G----LTDDVDIIMGTLGKAF-GAVG---GYIA---GSKELIDYLRSYAR 226 (349)
T ss_pred CCEEEEEccccccccCCCCC--Chhhh-c-c----ccccCcEEEeechhhh-cccC---CEEE---CCHHHHHHHHHhch
Confidence 99999999997543311111 11111 0 0 2234679999999998 6544 9988 58888888766543
Q ss_pred -h--cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCCh
Q 041151 305 -I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP 381 (463)
Q Consensus 305 -~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~ 381 (463)
. ....+...+.++.+.++ +..+.+..+++++++++.+.+.|.+. |+.+..+.++++.++. .+.
T Consensus 227 ~~~~~~~~~~~~~~a~~~~l~-----------~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~--~~~ 292 (349)
T cd06454 227 GFIFSTSLPPAVAAAALAALE-----------VLQGGPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLI--GDD 292 (349)
T ss_pred hhhccCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEe--CCC
Confidence 2 22445555556665553 12223456788899999999999887 7776665555554432 221
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
.. +..++ .+.|.++||.+.++.......+.+++|++++ .+++++++++++|+++
T Consensus 293 ~~----------~~~~~-~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 293 PA----------KAVAF-SDALLERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred hH----------HHHHH-HHHHHhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 10 13444 4445566999998642222223468999998 6899999999999764
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=197.99 Aligned_cols=273 Identities=17% Similarity=0.230 Sum_probs=204.1
Q ss_pred CCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE-c------------cCcee----cCCCcccChHHHHHHHHHHHH
Q 041151 126 YPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL-L------------FHTTW----KRQQIGVLIINDLQQSVAQAR 187 (463)
Q Consensus 126 ~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv-p------------~g~~~----~~~~~~~d~~~~l~~~l~~~~ 187 (463)
.++++++|.++.|+-+.|..++++.+ .|| ++|+. | +++.+ -..+|.+|. +.+.+.+...
T Consensus 82 kpLt~dnic~GvGsDE~ID~iiR~~c-~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~pdF~lnv-dai~evl~~d- 158 (375)
T KOG0633|consen 82 KPLTSDNICVGVGSDELIDLIIRCVC-DPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNPDFSLNV-DAIAEVLELD- 158 (375)
T ss_pred CCCCccceEEecCcHHHHHHHHhhee-cCCccceeecCCcceeEEEEeecCCceEEEecCCCCccccH-HHHHHHHhcc-
Confidence 35889999999999999999999997 999 77776 3 44444 455899999 9999988752
Q ss_pred hcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEE
Q 041151 188 SKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVS 267 (463)
Q Consensus 188 ~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (463)
..+|.+++++|+||||..++.+++.+|++.- .|.+|++||+|-+|.- .. |-..+. .++.|.++
T Consensus 159 ---s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p--~nglVVvDEAYidFsg--~~---S~~~lV-------~kYpNLiv 221 (375)
T KOG0633|consen 159 ---SKIKCIFLTSPGNPTGSIIKEDDILKILEMP--DNGLVVVDEAYIDFSG--VE---SRMKLV-------KKYPNLIV 221 (375)
T ss_pred ---ccceEEEEcCCCCCCcccccHHHHHHHHhCC--CCcEEEEeeeeEeecc--cc---ccchHh-------HhCCceee
Confidence 2689999999999999999999999998843 2899999999998642 11 222222 34458999
Q ss_pred EecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 041151 268 FHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRR 347 (463)
Q Consensus 268 ~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (463)
+.+|||+| |++|+|+||-.+ +..+++.+.+.+. .++.|.....++.+++.+. ..+.++..+..+-+
T Consensus 222 lqTlSKsf-GLAGiRvG~~~~---~~~ia~iln~~Ka-PYNiS~~~s~~AL~Als~~---------n~kkme~~rdaiv~ 287 (375)
T KOG0633|consen 222 LQTLSKSF-GLAGIRVGYGAF---PLSIAEILNRAKA-PYNISVAGSVAALAALSDS---------NGKKMEDVRDAIVR 287 (375)
T ss_pred hhhhhhhc-CcceeEeecccc---cHHHHHHHHhccC-CccccchhHHHHHHhcCcc---------cchHHHHHHHHHHH
Confidence 99999999 999999999994 8889999988887 6777888777887777532 24445667777888
Q ss_pred HHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCCCCCCCCcEE
Q 041151 348 RARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGFGQKEGIFHL 425 (463)
Q Consensus 348 ~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~~~~~~~~l 425 (463)
.+..|...|.++|++.- ..+...-|+++.+.-....+ +.....+.+.+.||.|+- |+.-+ .++++
T Consensus 288 er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n~~----------akkly~q~at~~gVvVRfrgse~~---c~G~l 354 (375)
T KOG0633|consen 288 ERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDNGM----------AKKLYKQDATKMGVVVRFRGSEEG---CKGYL 354 (375)
T ss_pred HHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCcHH----------HHHHHHHHHHhcceEEEEcCCccc---cceeE
Confidence 88899999999887663 22223345554444222111 344455677889999975 33222 34599
Q ss_pred EEEecCCcCcHHHHHHHHHHH
Q 041151 426 RTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 426 Ris~~~~~e~i~~~~~~l~~~ 446 (463)
||++++. |+...+++.|+++
T Consensus 355 RitvGt~-EentvL~k~~K~~ 374 (375)
T KOG0633|consen 355 RITVGTP-EENTVLMKCLKQF 374 (375)
T ss_pred EEEcCCc-ccchHHHHHHHhh
Confidence 9999976 5677788877765
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=223.53 Aligned_cols=303 Identities=16% Similarity=0.177 Sum_probs=210.7
Q ss_pred cHHHHHHHHHHhhhcCCC--CCccCC----CCCCHHHHHHHHHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHH----
Q 041151 82 PADAIARAKHYLSLTSGG--LGAYSD----SRGIPGVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCV---- 150 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~--~~~Y~~----~~g~~~lr~~ia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l---- 150 (463)
|..+++++.+.+.....+ ...|.. ..-..++|+++|++++ . ++++|++|+|+++++..++.++
T Consensus 36 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t~g~t~~l~~~~~~~~~~~ 109 (406)
T PRK09295 36 PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFIN------ARSAEELVFVRGTTEGINLVANSWGNSN 109 (406)
T ss_pred CHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcC------cCCCCeEEEeCCHHHHHHHHHHHhhhhc
Confidence 888999998877642111 111110 1124578888888885 3 5789999999999999998864
Q ss_pred hcCCCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 151 IRGEGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 151 ~~~~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
+ ++||+|+++ .|+++ ...++.+|+ +.|++++++ ++++|++++|+||||.++
T Consensus 110 ~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~-~~l~~~i~~------~t~lv~l~~~~n~tG~~~ 181 (406)
T PRK09295 110 V-RAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQL-ETLPALFDE------RTRLLAITHVSNVLGTEN 181 (406)
T ss_pred C-CCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCH-HHHHHhcCC------CcEEEEEecchhcccccC
Confidence 4 789999986 35554 234566899 999999876 799999999999999999
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+ +++|.++|+++++++++|++|+.... ..++... +..+++.|++|.+ |++| +||+++
T Consensus 182 ~---~~~i~~~~~~~~~~vivD~a~~~g~~-----~~~~~~~-----------~~D~~~~s~~K~~-gp~G--~G~l~~- 238 (406)
T PRK09295 182 P---LAEMIALAHQHGAKVLVDGAQAVMHH-----PVDVQAL-----------DCDFYVFSGHKLY-GPTG--IGILYV- 238 (406)
T ss_pred C---HHHHHHHHHHcCCEEEEEcccccCcc-----ccCchhc-----------CCCEEEeehhhcc-CCCC--cEEEEE-
Confidence 8 66778888899999999999976422 1222221 1247889999976 8777 799985
Q ss_pred CCChhHHHHHHhhhh-----------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHH-HHHHHHHHH
Q 041151 290 NIPPKTVDEIYKIAS-----------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVR-ESKGILESL 345 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~-----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~ 345 (463)
++++++.+..... ...+++.....++.++++ ...+ -.+.++++.
T Consensus 239 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~----------~~~~~g~~~i~~~~ 306 (406)
T PRK09295 239 --KEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALD----------YVSALGLNNIAEYE 306 (406)
T ss_pred --chHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHH----------HHHHhCHHHHHHHH
Confidence 7777665431100 112345555555555542 1222 145677788
Q ss_pred HHHHHHHHHHhhcCCCcccccCC--ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC----
Q 041151 346 RRRARMMTDGFNSCRNVVCNFTE--GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK---- 419 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~---- 419 (463)
++.++++.+.|.+++|+.+..+. .+++.+ .++.. +..+ +...|.++||.++.|..+...
T Consensus 307 ~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~---~~~~~-----------~~~~-~~~~L~~~gI~v~~g~~c~~~~~~~ 371 (406)
T PRK09295 307 QNLMHYALSQLESVPDLTLYGPQNRLGVIAF---NLGKH-----------HAYD-VGSFLDNYGIAVRTGHHCAMPLMAY 371 (406)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCCceEEEE---EECCc-----------CHHH-HHHHHHhCCeEEeccccchHHHHHH
Confidence 88889999999988888877653 444443 22221 1333 455688999999998866431
Q ss_pred -CCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 420 -EGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 420 -~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
...+++|+|+. ++++|++.+++.|+++.+
T Consensus 372 ~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 372 YNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 11247999999 899999999999988643
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=222.94 Aligned_cols=296 Identities=14% Similarity=0.144 Sum_probs=198.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cC----CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RG----EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~----~g 155 (463)
++.+.+++.+++.........|+. +.+.++++.+.+.+| .+++++++|+++++..++.++. .. ++
T Consensus 45 ~p~v~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~la~~~g----~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~ 115 (379)
T TIGR00707 45 HPKLVEALKEQLEKLVHVSNLYYT-----EPQEELAEKLVEHSG----ADRVFFCNSGAEANEAALKLARKYTGDKGKEK 115 (379)
T ss_pred CHHHHHHHHHHHhhccccccccCC-----HHHHHHHHHHHhhCC----CCEEEEeCCcHHHHHHHHHHHHHHhhccCCCC
Confidence 688999998888763211223422 344444444444433 3599999999999999988652 02 37
Q ss_pred CEEEEc---c-Ccee-----------------cCCCccc----ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-C
Q 041151 156 DGVVLL---F-HTTW-----------------KRQQIGV----LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC-L 209 (463)
Q Consensus 156 d~Vlvp---~-g~~~-----------------~~~~~~~----d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~-~ 209 (463)
++|+++ + |... ....+.. |+ +.+++.+.+ ++++|+++.++||+|.. +
T Consensus 116 ~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~~~p~~~~~g~~~~ 188 (379)
T TIGR00707 116 KKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDI-ESLKKAIDD------ETAAVIVEPIQGEGGVNPA 188 (379)
T ss_pred CeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCH-HHHHHHhhh------CeeEEEEEccccCCCCccC
Confidence 888886 2 1110 0011112 78 999999887 78999997667777764 6
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+.+++++|.++|+++++++|+||+|.++.+. +. ..++... ++ .. ++ .||||.+ + +|+|+||++
T Consensus 189 ~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~-g~-~~~~~~~--~~----~~--d~---~t~sK~~-~-~G~riG~~~-- 251 (379)
T TIGR00707 189 SAEFLKALREICKDKDALLIFDEVQTGIGRT-GK-FFAYEHY--GI----EP--DI---ITLAKGL-G-GGVPIGATL-- 251 (379)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCcc-ch-hhhHHhc--CC----CC--CE---EEEcccc-c-CCcccEEEE--
Confidence 8999999999999999999999999876542 21 1111111 11 22 22 3789999 7 999999999
Q ss_pred CCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccc
Q 041151 290 NIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---RNVVCN 365 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~ 365 (463)
+++++++.+..... ..++.+.+.|.++.++|+ ... ..+.+++++++++.+.+.|++. .++...
T Consensus 252 -~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~-----------~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (379)
T TIGR00707 252 -AKEEVAEAFTPGDHGSTFGGNPLACAAALAVLE-----------VIE-KERLLENVKEKGDYFKERLEELGKNYPNKEV 318 (379)
T ss_pred -EcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHH-----------HHH-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCcc
Confidence 58889988876542 456788999999988874 111 1235666777777777777654 122112
Q ss_pred cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHH
Q 041151 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESF 443 (463)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l 443 (463)
+..|.++|+.+. . +...+ .+.|.++||.+.|+. .+++||+++ .+++++++++++|
T Consensus 319 -~~~g~~~~~~~~--~------------~~~~~-~~~l~~~Gv~v~~~~-------~~~lRi~~~~~~t~~~i~~~~~~l 375 (379)
T TIGR00707 319 -RGKGLMLGIELE--A------------PCKDI-VKKALEKGLLVNCAG-------PKVLRFLPPLIITKEEIDEAVSAL 375 (379)
T ss_pred -ccCceEEEEEec--C------------cHHHH-HHHHHHCCcEEeeCC-------CCEEEEECCCcCCHHHHHHHHHHH
Confidence 235667775443 1 12344 455778999999842 248999975 7889999999999
Q ss_pred HHH
Q 041151 444 KKF 446 (463)
Q Consensus 444 ~~~ 446 (463)
+++
T Consensus 376 ~~~ 378 (379)
T TIGR00707 376 EEA 378 (379)
T ss_pred HHh
Confidence 875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=217.40 Aligned_cols=312 Identities=14% Similarity=0.079 Sum_probs=208.9
Q ss_pred cHHHHHHHHHHhhhcCCCCC----ccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--CC
Q 041151 82 PADAIARAKHYLSLTSGGLG----AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG--EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~----~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~g 155 (463)
++.+++++.+++..++.... .|+...-+.+|+++++++++ .+..++++++++++..++..+. . ++
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g--------~~~~l~~~sG~~an~~ai~~l~-~~~~~ 131 (402)
T TIGR01821 61 HPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG--------KESALVFTSGYVANDATLATLA-KIIPG 131 (402)
T ss_pred CHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC--------CCeEEEECchHHHHHHHHHHhh-CCCCC
Confidence 88999999998887532111 12222234678888887764 1334545555888888988876 4 78
Q ss_pred CEEEEc-------------cCceecCCCc-ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 156 DGVVLL-------------FHTTWKRQQI-GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 156 d~Vlvp-------------~g~~~~~~~~-~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+.|+.+ .|..+ ..+ ..|. +.+++.++... ..++++|++++|+||||.+.+ +++|.++|
T Consensus 132 ~~v~~~~~~h~s~~~~~~~~g~~~--~~~~~~d~-~~l~~~l~~~~--~~~~~~v~~e~~~~~~G~~~~---l~~i~~l~ 203 (402)
T TIGR01821 132 CVIFSDELNHASMIEGIRHSGAEK--FIFRHNDV-AHLEKLLQSVD--PNRPKIIAFESVYSMDGDIAP---IEEICDLA 203 (402)
T ss_pred CEEEEcchHhHHHHHHHHHcCCeE--EEECCCCH-HHHHHHHHhcc--CCCCeEEEEcCCCCCCCCccC---HHHHHHHH
Confidence 888776 12221 112 2367 88888876421 115789999999999999988 77788888
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+++++++|+||+|+...++ .... .+... .++ . ....|+++||||+| |++| ||++ +++++++.+..
T Consensus 204 ~~~~~~livDea~~~G~~g-~~g~-g~~~~-~~~----~-~~~div~~t~sKa~-g~~G---G~i~---~~~~~~~~l~~ 268 (402)
T TIGR01821 204 DKYGALTYLDEVHAVGLYG-PRGG-GIAER-DGL----M-HRIDIIEGTLAKAF-GVVG---GYIA---ASRKLIDAIRS 268 (402)
T ss_pred HHcCCEEEEeCcccccccC-CCCC-ccchh-ccC----C-CCCeEEEEechhhh-ccCC---ceee---cCHHHHHHHHH
Confidence 9999999999999965552 2111 11111 111 1 12358889999999 7777 8988 68899998876
Q ss_pred hhh---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc
Q 041151 302 IAS---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR 378 (463)
Q Consensus 302 ~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~ 378 (463)
... .+.+.++..+.++.++|+ +.+....+++.+.++++++.+.|+++ |+.+..+.++++.+ .+.
T Consensus 269 ~~~~~~~t~~~~~~~~aaa~aaL~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i~~i-~~~ 335 (402)
T TIGR01821 269 YAPGFIFTTSLPPAIAAGATASIR-----------HLKESQDLRRAHQENVKRLKNLLEAL-GIPVIPNPSHIVPV-IIG 335 (402)
T ss_pred hCcCceecCcCCHHHHHHHHHHHH-----------HhhcCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEEEE-EeC
Confidence 553 133456667777777663 22222345566778889999999887 88877777765433 232
Q ss_pred CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 379 LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+. ...++...+++++||.+.+......+.+..++||++. .+++|++++++.|+++++++
T Consensus 336 ~~~------------~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 336 DAA------------LCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CHH------------HHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 111 1344555556677999998664444445568999998 88899999999999887653
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=217.52 Aligned_cols=283 Identities=14% Similarity=0.165 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC---C
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR---Q 169 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~---~ 169 (463)
+..+++.+|++++ .+.+++++|+++++..++.+++ ++||.|+++ .|+++ +. .
T Consensus 53 ~~~~~e~lA~~~g--------~~~~~i~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~ 123 (370)
T TIGR02539 53 IHDFLEDLAEFLG--------MDEARVTHGAREGKFAVMHALC-KEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHP 123 (370)
T ss_pred HHHHHHHHHHHhC--------CCceEEECChHHHHHHHHHHhh-CCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcc
Confidence 3577888888875 3467779999999999999998 899999996 55555 22 3
Q ss_pred CcccChHHHHHHHHHHHHhc-CCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 170 QIGVLIINDLQQSVAQARSK-GITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~-~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
.+.+|+ +.|++.+++.... +.++++|++++|+||||...+ +++|+++|+++|+++|+||+|+.... ..+.
T Consensus 124 ~~~~d~-~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~~-----~~~~ 194 (370)
T TIGR02539 124 EYKVDP-EGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGRM-----PVSA 194 (370)
T ss_pred cCCcCH-HHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHcCCeEEEECccccCCc-----CCCH
Confidence 577899 9999998752111 125789999999999999877 66777788899999999999986422 1122
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc--------cCChHHHHHHHH
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL--------SPNVPAQIFMGL 319 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~--------~~~~~~q~~~~~ 319 (463)
... + ..++++|+||++ + +|.|+||++ +++++++.+..... ..+ ......+.++..
T Consensus 195 ~~~--------~---~di~v~s~sK~~-~-~~g~~G~l~---~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (370)
T TIGR02539 195 KEI--------G---ADFIVGSGHKSM-A-ASGPCGVLG---MSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMA 258 (370)
T ss_pred HHc--------C---CCEEEeeCcccc-c-CCCCEEEEE---ECHHHHhhhcccccCCccceeeeecccccccHHHHHHH
Confidence 111 1 236779999999 6 577899999 58999998876653 111 111124444444
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cCCceeEEeeeccCChhhHHHHhhcCCCChHH
Q 041151 320 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN--FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVF 397 (463)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (463)
++. ...++.+..++.++. ++++.+.|+++ |+.+. .+..+.|++++++.....+. +......
T Consensus 259 al~----------~~~~~l~~~~~~~~~-~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~-----~~~~~~~ 321 (370)
T TIGR02539 259 SFP----------HVVERVKRWDEEVKK-TRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQ-----KHKRRGY 321 (370)
T ss_pred HHH----------HHHHHHHHHHHHHHH-HHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhHHhh-----hhccccH
Confidence 431 112223333333344 46899999998 77753 34456666654431100000 0001223
Q ss_pred HHHHHHHhcCeE-eeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 398 YCLRLLEATGIS-TVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 398 ~~~~ll~~~gI~-v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
.+.+.|.++||. +++ +. ..++|+++. .+++|+++++++|++++++
T Consensus 322 ~~~~~L~e~GI~~ir~----~~---~~~iRis~~~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 322 FLYEELKKRGIHGIRS----GQ---TKYFKLSVYGLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred HHHHHHHhCCCccccC----Cc---ceEEEEEecCCCHHHHHHHHHHHHHHHHh
Confidence 456677888997 554 21 248999974 6889999999999887654
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=214.75 Aligned_cols=301 Identities=11% Similarity=0.011 Sum_probs=202.9
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
+|+.+++++.+.... . ..|++.....++++.++++++ ++++++++|+++++..++.+++ ++||.|++
T Consensus 10 ~~~~v~~a~~~~~~~---~-~~~~~~~~~~~l~~~~a~~~g--------~~~~~~~~~gt~a~~~~~~~l~-~~gd~v~~ 76 (338)
T cd06502 10 PTPEMLEAMAAANVG---D-DVYGEDPTTAKLEARAAELFG--------KEAALFVPSGTAANQLALAAHT-QPGGSVIC 76 (338)
T ss_pred CCHHHHHHHHhcccC---C-cccCCCHHHHHHHHHHHHHhC--------CCeEEEecCchHHHHHHHHHhc-CCCCeEEE
Confidence 488899988776543 1 356655566788888877763 4677788888899999999997 89999998
Q ss_pred c----------------cCcee---cCCCcccChHHHHHHHHHHHHhc-CCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 161 L----------------FHTTW---KRQQIGVLIINDLQQSVAQARSK-GITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 161 p----------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~-~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
+ .|+++ +.+.+.+|+ +.+++++++..+. .+++++|++++|||| |.+++.+++++|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~ 154 (338)
T cd06502 77 HETAHIYTDEAGAPEFLSGVKLLPVPGENGKLTP-EDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISAL 154 (338)
T ss_pred ecCcceeeecCCcHHHHcCceEEeecCCCCcCCH-HHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHH
Confidence 6 13333 334467999 9999998742100 125899999999998 667799999999999
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++|+++|+||+|..+... .... ++..... . ..+++.|+||+| +++| |++++ +++++++.+.
T Consensus 155 ~~~~~~~livDea~~~~~~~-~~~~-~~~~~~~------~---~d~~~~s~sK~~-~~~~---g~~~~--~~~~~~~~~~ 217 (338)
T cd06502 155 AKENGLPLHLDGARLANAAA-ALGV-ALKTYKS------G---VDSVSFCLSKGG-GAPV---GAVVV--GNRDFIARAR 217 (338)
T ss_pred HHHcCCeEeechHHHHHHHH-hcCC-CHHHHHh------c---CCEEEEeccccC-CCcc---ceEEE--CCHHHHHHHH
Confidence 99999999999998643221 1111 3322211 1 125678999999 7777 44433 6888999887
Q ss_pred hhhh---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeec
Q 041151 301 KIAS---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQI 377 (463)
Q Consensus 301 ~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~ 377 (463)
.... ..+..+.+.+.++...|+.. . + .+..+++.++++++.+.|+++ |+.+.++.++++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~a~~~~L~~~-----~---~----~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~v--- 281 (338)
T cd06502 218 RRRKQAGGGMRQSGFLAAAGLAALEND-----L---W----LRRLRHDHEMARRLAEALEEL-GGLESEVQTNIVLL--- 281 (338)
T ss_pred HHHHHhCCChhhHHHHHHHHHHHhcCc-----h---H----HHHHHHHHHHHHHHHHHHHhc-CCCcccccCCeEEE---
Confidence 7653 23345667777777776521 1 1 123456777788999999988 56666667676554
Q ss_pred cCChhhHHHHhhcCCCChHHHHHHHH--HhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHH
Q 041151 378 RLPPKAIEAAKRAGKVPDVFYCLRLL--EATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKK 445 (463)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~ll--~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~ 445 (463)
..+... ..-..+..++. .++||.+.+... +++|+++. .++++++++++++++
T Consensus 282 ~~~~~~---------~~~~~l~~~l~~~~~~gi~~~~~~~-------~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 282 DPVEAN---------AVFVELSKEAIERRGEGVLFYAWGE-------GGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred ecCCcc---------HHHHHHHHHHHHhhhCCEEEEecCC-------CeEEEEeecCCCHHHHHHHHHHHhc
Confidence 222110 00112222211 257999877421 47999999 688999999998864
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=216.07 Aligned_cols=312 Identities=12% Similarity=0.026 Sum_probs=211.1
Q ss_pred cHHHHHHHHHHhh-hcC---CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLS-LTS---GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~-~~~---~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+.+++.+.+. .+. .....|....+...+++.+++++.+.+|.+ ..+|++++ +++++..++.+++ +|||+
T Consensus 32 ~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~~s-gt~a~~~~l~~l~-~~Gd~ 107 (402)
T cd00378 32 SPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQPHS-GSQANLAVYFALL-EPGDT 107 (402)
T ss_pred CHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeecCC-cHHHHHHHHHHhc-CCCCE
Confidence 7889988876542 221 123446666677788887777776666653 34566665 5799999999998 99999
Q ss_pred EEEc---c---------------Ccee-----cCC--CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 158 VVLL---F---------------HTTW-----KRQ--QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 158 Vlvp---~---------------g~~~-----~~~--~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
|+++ + |.++ ..+ ++.+|+ +.+++.+.+. ++++|++++|+||+ ..
T Consensus 108 Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~-~~l~~~i~~~-----~~~~v~~~~~~~~~--~~--- 176 (402)
T cd00378 108 IMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDY-DALEKMALEF-----KPKLIVAGASAYPR--PI--- 176 (402)
T ss_pred EEEecCccCccccccccccccccceeEEEecCCcCcccCCcCH-HHHHHHHHhC-----CCCEEEecCcccCC--Cc---
Confidence 9996 1 2222 222 688999 9999998643 78999999998874 22
Q ss_pred HHHHHHHHhhhCCeEEEecccc-cccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC
Q 041151 213 NLREILRFCYQENLVLLGDEVY-QQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 291 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 291 (463)
++++|+++|+++|++||+|++| ..+.+ .+.....+ . . ..++++|+||+| +|+|+||++.
T Consensus 177 ~~~~I~~l~~~~~~~li~D~a~~~g~~~-~g~~~~~~-----------~-~-~dv~~~s~sK~l---~G~~gg~i~~--- 236 (402)
T cd00378 177 DFKRFREIADEVGAYLLVDMAHVAGLVA-GGVFPNPL-----------P-G-ADVVTTTTHKTL---RGPRGGLILT--- 236 (402)
T ss_pred CHHHHHHHHHhcCCEEEEEccchhhhhh-cccCCCcc-----------c-C-CcEEEeccccCC---CCCCceEEEe---
Confidence 3888999999999999999996 33333 22111111 1 1 126899999987 6899999995
Q ss_pred Ch-hHHHHHHhhhh-hcccCChHHHH-HHHHhcCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccc-c
Q 041151 292 PP-KTVDEIYKIAS-IALSPNVPAQI-FMGLMVNPLKPGDISYEQFVR-ESKGILESLRRRARMMTDGFNSCRNVVCN-F 366 (463)
Q Consensus 292 ~~-~~~~~l~~~~~-~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~ 366 (463)
++ ++++.+.+... ...+.+...+. ++..++. .... +.++.+++++++++++.+.|++. |+.+. .
T Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 305 (402)
T cd00378 237 RKGELAKKINSAVFPGLQGGPHLHVIAAKAVALK----------EALEPEFKAYAKQVVENAKALAEALKER-GFKVVSG 305 (402)
T ss_pred ccHHHHHHHHHHhCccccCCchHHHHHHHHHHHH----------HHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeec
Confidence 54 88888876653 22333322232 2222221 1122 34456778999999999999988 88775 4
Q ss_pred CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC---CCCcEEEEEec-C-----CcCcHH
Q 041151 367 TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK---EGIFHLRTTIL-P-----AEEDMP 437 (463)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~---~~~~~lRis~~-~-----~~e~i~ 437 (463)
+.+++++|++++... .+...+.++|+++||.+.+....+.. ....++|+++. . +++|++
T Consensus 306 ~~~~~~v~v~~~~~~------------~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~ 373 (402)
T cd00378 306 GTDNHLVLVDLRPKG------------ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEME 373 (402)
T ss_pred CCCCeEEEEeCCccC------------CCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHH
Confidence 678899997765211 12334566788999999874322221 13357999997 2 589999
Q ss_pred HHHHHHHHHHHHHH
Q 041151 438 AIMESFKKFNDEFM 451 (463)
Q Consensus 438 ~~~~~l~~~l~~~~ 451 (463)
.+++.|++++++-.
T Consensus 374 ~~~~~l~~~~~~~~ 387 (402)
T cd00378 374 EIADFIARALKDAE 387 (402)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998776543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.2e-24 Score=214.10 Aligned_cols=308 Identities=14% Similarity=0.137 Sum_probs=204.0
Q ss_pred cHHHHHHHHHHhhhcCCCC---Ccc-CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGL---GAY-SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~---~~Y-~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
.+.+++++.+++..++... ..| .......+|++.+|++++ .+.+++++|+++++..+++++. .+||.
T Consensus 70 ~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--------~~~~~~~~sG~~An~~~l~~l~-~~g~~ 140 (407)
T PRK07179 70 HPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTG--------FESCLLCQSGWAANVGLLQTIA-DPNTP 140 (407)
T ss_pred CHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHhC-CCCCE
Confidence 7889999998887642211 112 111234678888888864 3567889999999999999998 89999
Q ss_pred EEEc-------------cCceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 158 VVLL-------------FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 158 Vlvp-------------~g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
|+++ .|.++. .....|+ +.|++.+++. ++++|++++|+||||.+.+ +++|.++|+++
T Consensus 141 v~~~~~~h~s~~~~~~~~g~~~~-~~~~~d~-~~l~~~l~~~-----~~~lV~v~~v~n~tG~i~p---l~~I~~l~~~~ 210 (407)
T PRK07179 141 VYIDFFAHMSLWEGVRAAGAQAH-PFRHNDV-DHLRRQIERH-----GPGIIVVDSVYSTTGTIAP---LADIVDIAEEF 210 (407)
T ss_pred EEEECCcCHHHHHHHHHCCCeEE-EecCCCH-HHHHHHHHhc-----CCeEEEECCCCCCCCcccc---HHHHHHHHHHc
Confidence 9886 222221 1112488 9999999762 4788888899999999999 66788888999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
|+++|+||+|....++ ......+. .++. . ....+++.|+||++ | .|+||++ +++++++.+.....
T Consensus 211 ~~~livDea~~~g~~g-~~g~g~~~----~~~~--~-~~vdi~~~S~sK~~-g---~~~G~l~---~~~~~~~~~~~~~~ 275 (407)
T PRK07179 211 GCVLVVDESHSLGTHG-PQGAGLVA----ELGL--T-SRVHFITASLAKAF-A---GRAGIIT---CPRELAEYVPFVSY 275 (407)
T ss_pred CCEEEEECcccccCcC-CCCCchHH----hcCC--C-CCCCEEEeechHhh-h---ccCeEEE---eCHHHHHHHHHhCc
Confidence 9999999999865442 11111121 1211 1 11248889999988 4 3799998 58888887765543
Q ss_pred -h-cccCChHHHHH-HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCCh
Q 041151 305 -I-ALSPNVPAQIF-MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP 381 (463)
Q Consensus 305 -~-~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~ 381 (463)
. ..++....+.+ +.++++ ...+.+..+++++++++++.+.|+++ |+.+. +.+ .++++.+ +.
T Consensus 276 ~~~~~~t~~~~~~aa~~aal~-----------~~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~-~~~-~i~~l~~--~~ 339 (407)
T PRK07179 276 PAIFSSTLLPHEIAGLEATLE-----------VIESADDRRARLHANARFLREGLSEL-GYNIR-SES-QIIALET--GS 339 (407)
T ss_pred CeeeCCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCC-CEEEEEe--CC
Confidence 1 12222233333 223332 23333456788999999999999988 87766 344 3445333 22
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
. .+...+...|.++||.+......+.+.+.+++||+++ .+++|+++++++|++++++.
T Consensus 340 ~-----------~~~~~~~~~L~~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 340 E-----------RNTEVLRDALEERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred H-----------HHHHHHHHHHHHCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 0234455667889998542111111123468999999 79999999999999887764
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=218.14 Aligned_cols=303 Identities=15% Similarity=0.120 Sum_probs=196.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cCCCC--
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RGEGD-- 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~~gd-- 156 (463)
++.+.+++.+++.... .++.. ...+...++++.+.+. ...++|++++|+++|+..++++.. .++||
T Consensus 49 ~p~v~~a~~~~~~~~~----~~~~~-~~~~~~~~la~~l~~~----~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~ 119 (389)
T PRK01278 49 HPHLVEALKEQAEKLW----HVSNL-YRIPEQERLAERLVEN----SFADKVFFTNSGAEAVECAIKTARRYHYGKGHPE 119 (389)
T ss_pred CHHHHHHHHHHHHhcC----ccccc-cCChHHHHHHHHHHhh----CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 6789999988887521 11111 1234445566665443 234799999999999999988762 14666
Q ss_pred --EEEEc----cCcee----------c-------CCCcc----cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-cC
Q 041151 157 --GVVLL----FHTTW----------K-------RQQIG----VLIINDLQQSVAQARSKGITVRAMVIINPGNPTG-QC 208 (463)
Q Consensus 157 --~Vlvp----~g~~~----------~-------~~~~~----~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG-~~ 208 (463)
+|++. +|... . ..++. .|+ +.+++.+++ ++++|+++.++||+| .+
T Consensus 120 r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~avivep~~~~~G~~~ 192 (389)
T PRK01278 120 RYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDI-EALKAAITP------NTAAILIEPIQGEGGIRP 192 (389)
T ss_pred CCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCH-HHHHHhhCC------CeEEEEEecccCCCCCcC
Confidence 77775 22111 0 11111 578 999998876 799999997788988 78
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
++.+.+++|.++|++||+++|+||+|..+.+. +... .. .. .++ .. -+.||||.+ + +|+|+||++
T Consensus 193 ~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~-g~~~-~~-~~-~~~----~p-----di~t~sK~l-~-~G~~ig~~~- 256 (389)
T PRK01278 193 APDEFLKGLRQLCDENGLLLIFDEVQCGMGRT-GKLF-AH-EW-AGV----TP-----DIMAVAKGI-G-GGFPLGACL- 256 (389)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-Ccce-ee-cc-cCC----CC-----CEEEEehhc-c-CCcceEEEE-
Confidence 99999999999999999999999999976542 2211 11 10 011 11 135899999 6 899999999
Q ss_pred cCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccc
Q 041151 289 TNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN-VVCNF 366 (463)
Q Consensus 289 ~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg-~~~~~ 366 (463)
+++++++.+..... .+++.+++.|.++.+.|+... -....++.+++.+.++++.+.+.+ ..|+ +....
T Consensus 257 --~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~-----~~~~~~~~~~~~~~l~~~l~~l~~---~~~~~~~~v~ 326 (389)
T PRK01278 257 --ATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVIL-----APGFLDNVQRMGLYLKQKLEGLVD---RFPDVIEEVR 326 (389)
T ss_pred --EcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHh---hCCCceeeEe
Confidence 58888888765543 567788999999987764110 001122233333344443333322 2332 22233
Q ss_pred CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHH
Q 041151 367 TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~ 444 (463)
+ .|+++++.+. . ++.+++..++ ++||.+.|+. .+++||+++ .+++++++++++|+
T Consensus 327 g-~G~~~~i~~~--~------------~~~~~~~~l~-~~GV~~~p~~-------~~~lR~~p~~~~~~~~i~~~l~~l~ 383 (389)
T PRK01278 327 G-KGLLLGLKCV--V------------PNRDLVQALR-DEGLLTVGAG-------DNVVRLLPPLIITEEEIDEALERLE 383 (389)
T ss_pred c-ccEEEEEEEe--c------------CHHHHHHHHH-HCCeEEeecC-------CCEEEEeCCcccCHHHHHHHHHHHH
Confidence 3 4566664442 1 2455555555 5599999863 247999976 78899999999999
Q ss_pred HHHHH
Q 041151 445 KFNDE 449 (463)
Q Consensus 445 ~~l~~ 449 (463)
+++++
T Consensus 384 ~~l~~ 388 (389)
T PRK01278 384 RAAES 388 (389)
T ss_pred HHHHh
Confidence 98865
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=212.46 Aligned_cols=315 Identities=16% Similarity=0.101 Sum_probs=207.4
Q ss_pred cHHHHHHHHHHhhhcCCC----CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCC
Q 041151 82 PADAIARAKHYLSLTSGG----LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd 156 (463)
++.+++++.+++..+... ...|++..-+.+|++++|++++ .++.+++++| +++...++..+.. .+++
T Consensus 62 ~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g-------~~~~~~~~sG-~~an~~ai~~l~~~~~~~ 133 (407)
T PRK09064 62 HPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG-------KEAALVFTSG-YVSNDATLSTLAKLIPDC 133 (407)
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC-------CCcEEEECcH-HHHHHHHHHHHhCCCCCC
Confidence 788999998888764211 1123333345678888888763 2345655665 5677777887751 2777
Q ss_pred EEEEc--------cCcee---cCCCc-ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 157 GVVLL--------FHTTW---KRQQI-GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 157 ~Vlvp--------~g~~~---~~~~~-~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|+.+ .|.+. +...+ ..|. +.|++.++... .+++++|++++|+||+|.+.+ +++|.++|+++
T Consensus 134 ~i~~~~~~h~s~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~~--~~~~~~v~~~~v~s~~G~~~~---l~~i~~l~~~~ 207 (407)
T PRK09064 134 VIFSDELNHASMIEGIRRSRCEKHIFRHNDV-AHLEELLAAAD--PDRPKLIAFESVYSMDGDIAP---IAEICDLADKY 207 (407)
T ss_pred EEEEeCcchHHHHHHHHHcCCcEEEECCCCH-HHHHHHHHhcc--CCCCeEEEEeCCCCCCccccC---HHHHHHHHHHc
Confidence 77665 11111 11111 1367 88888886321 026899999999999999987 77777788899
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
++++|+||+|+...|+. .. ..+... .++ . ....|+++||||+| |++| ||++ +++++++.+.+...
T Consensus 208 ~~~livDEa~~~G~~g~-~g-~g~~~~-~~~----~-~~~div~~t~sKa~-g~~G---G~~~---~~~~~~~~l~~~~~ 272 (407)
T PRK09064 208 NALTYLDEVHAVGMYGP-RG-GGIAER-DGL----M-DRIDIIEGTLAKAF-GVMG---GYIA---GSAALVDAVRSYAP 272 (407)
T ss_pred CCEEEEECCCcccccCC-CC-CChHHh-cCC----C-CCCeEEEEecchhh-hccC---ceEe---cCHHHHHHHHHhCc
Confidence 99999999998554522 11 122221 111 1 12468899999999 7777 9988 68889988876543
Q ss_pred -h--cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCCh
Q 041151 305 -I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP 381 (463)
Q Consensus 305 -~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~ 381 (463)
. +.+.++..+.++.+.++ +.++....+++++++++++.+.|++. |+.+..+.+++ +++.+..+.
T Consensus 273 ~~~~t~~~~~~~~~aa~~al~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-v~i~~~~~~ 339 (407)
T PRK09064 273 GFIFTTSLPPAIAAAALASIR-----------HLKESNEERERHQERAAKLKAALDAA-GIPVMPNESHI-VPVMVGDPE 339 (407)
T ss_pred cccccCcCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEEeCCHH
Confidence 2 23445555666655542 23322345677889999999999987 88877666654 343332111
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..++...+++++||.+.+...+..+.+..++||+++ ++++|++++++.|+++++++
T Consensus 340 ------------~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 340 ------------KCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred ------------HHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1345555566677999998665444345568999998 78899999999999988764
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=220.05 Aligned_cols=306 Identities=15% Similarity=0.160 Sum_probs=208.3
Q ss_pred cHHHHHHHHHHhhhcCCCC---CccCC---CCCCHHHHHHHHHHHHHhcCCCCC-CCcEEEcCCcHHHHHHHHHHH----
Q 041151 82 PADAIARAKHYLSLTSGGL---GAYSD---SRGIPGVRKEVAEFIERRDGYPSD-PELIFLTDGASKGVMQTLNCV---- 150 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~---~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l---- 150 (463)
|..+++++.+.+....... ..|.. ...+.++|+.++++++ .+ +++|++|+|+++++..++..+
T Consensus 45 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~~v~~t~g~t~al~~i~~~~~~~~ 118 (424)
T PLN02855 45 PAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFIN------ASTSREIVFTRNATEAINLVAYTWGLAN 118 (424)
T ss_pred CHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcC------CCCCCEEEEeCCHHHHHHHHHHHhhhhc
Confidence 8889999888776532111 11111 1124588899999886 43 579999999999999998863
Q ss_pred hcCCCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 151 IRGEGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 151 ~~~~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
+ ++||+|+++ .|+++ ....+.+|+ +.+++.+++ ++++|++++|+||||.++
T Consensus 119 ~-~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~-~~l~~~i~~------~t~lv~i~~~~n~tG~~~ 190 (424)
T PLN02855 119 L-KPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDV-EQLKELLSE------KTKLVATHHVSNVLGSIL 190 (424)
T ss_pred C-CCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCH-HHHHHHhcc------CceEEEEeCccccccccC
Confidence 4 789999986 35555 233456899 999999986 899999999999999999
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+ +++|+++|+++|++|++|++|+.. .....+.. .+..+++.|++|.+ |++| +||+++
T Consensus 191 ~---~~~I~~l~~~~g~~vivD~a~~~g-----~~~~~~~~-----------~~~d~~~~s~~K~~-gp~G--~G~l~~- 247 (424)
T PLN02855 191 P---VEDIVHWAHAVGAKVLVDACQSVP-----HMPVDVQT-----------LGADFLVASSHKMC-GPTG--IGFLWG- 247 (424)
T ss_pred C---HHHHHHHHHHcCCEEEEEhhhhcC-----CcCCCchh-----------cCCCEEEeeccccc-CCCc--cEEEEE-
Confidence 8 567788888999999999999642 11122222 11247899999966 7777 899995
Q ss_pred CCChhHHHHHHhhhh---------------------hccc-CChHHHHHHHHhcCCCCCCCchHHHHHH-HHHHHHHHHH
Q 041151 290 NIPPKTVDEIYKIAS---------------------IALS-PNVPAQIFMGLMVNPLKPGDISYEQFVR-ESKGILESLR 346 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~---------------------~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~ 346 (463)
++++++.+..... ...+ ++.....++..+++ ...+ ..++++++..
T Consensus 248 --~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~----------~~~~~g~~~i~~~~~ 315 (424)
T PLN02855 248 --KSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAID----------YLSEIGMDRIHEYEV 315 (424)
T ss_pred --chhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHH----------HHHHhCHHHHHHHHH
Confidence 7777766532210 0111 22223333344432 1111 2556777888
Q ss_pred HHHHHHHHHhhcCCCcccccCC-------ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhc-CeEeeCCCCCCC
Q 041151 347 RRARMMTDGFNSCRNVVCNFTE-------GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEAT-GISTVPGSGFGQ 418 (463)
Q Consensus 347 ~~~~~l~~~L~~~pg~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gI~v~pg~~f~~ 418 (463)
+.++.+.+.|++++|+++..+. ++++.+ .+|.. +..+ +...|.++ ||.++.|..+..
T Consensus 316 ~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~---~~~~~-----------~~~~-v~~~L~~~~gI~v~~g~~c~~ 380 (424)
T PLN02855 316 ELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAF---NVEGI-----------HPTD-LSTFLDQQHGVAIRSGHHCAQ 380 (424)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEE---EECCc-----------CHHH-HHHHhcccCCEEEechhhhhH
Confidence 8889999999888888877442 233332 33321 1334 44455555 999999886532
Q ss_pred C-----CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 419 K-----EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 419 ~-----~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+ .-..++|+|+. ++++|++++++.|+++++++.
T Consensus 381 ~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 381 PLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred HHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11247999999 899999999999999988754
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=221.05 Aligned_cols=304 Identities=13% Similarity=0.062 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+++.........|+...+ .++++++.+.++.. ++++|++++|+++++..+++.+. .+| +.|+.
T Consensus 61 ~p~v~~ai~~~~~~~~~~~~~~~~~~~-----~~la~~l~~~~~~~-~~~~v~~~~sgsea~~~al~~~~-~~g~~~ii~ 133 (398)
T PRK03244 61 HPAVVEAVTRQLATLGHVSNLFATEPQ-----IALAERLVELLGAP-EGGRVFFCNSGAEANEAAFKLAR-LTGRTKIVA 133 (398)
T ss_pred CHHHHHHHHHHHHhccCccCccCCHHH-----HHHHHHHHHhCCCC-CCCEEEEeCchHHHHHHHHHHHH-HHCCCeEEE
Confidence 688999998888764222234654322 34555554444422 45799999999999999999876 566 33433
Q ss_pred c----cCcee----------cC-------CC-c---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH-H
Q 041151 161 L----FHTTW----------KR-------QQ-I---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN-L 214 (463)
Q Consensus 161 p----~g~~~----------~~-------~~-~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~-l 214 (463)
. +|... .. .. . -.|+ +.+++.+.+ ++++|+++.++||||.+++.++ +
T Consensus 134 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~aviiep~~~~~G~~~~~~~~l 206 (398)
T PRK03244 134 AEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDV-DALAAAVDD------DTAAVFLEPIQGEAGVVPPPAGYL 206 (398)
T ss_pred ECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCH-HHHHHhhcC------CeEEEEEecccCCCCCcCCCHHHH
Confidence 2 22211 00 00 0 0277 899988864 7999999999999999997665 9
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|.++|++||+++|+||+|..+... +.. ..+ .. .++ ..+ +.||||++ + +|+|+||++ ++++
T Consensus 207 ~~l~~l~~~~~~llI~DEv~~g~gr~-g~~-~~~-~~-~~~----~pD-----i~t~sK~l-~-~G~~ig~~~---~~~~ 268 (398)
T PRK03244 207 AAAREITDRHGALLVLDEVQTGIGRT-GAW-FAH-QH-DGV----TPD-----VVTLAKGL-G-GGLPIGACL---AFGP 268 (398)
T ss_pred HHHHHHHHHcCCEEEEeccccCCccc-chH-Hhh-hh-hCC----CCC-----EEEEchhh-h-CCcccEEEE---EcHH
Confidence 99999999999999999999875431 111 111 11 111 221 24889999 6 899999999 4888
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc--ccCCcee
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC--NFTEGAM 371 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~--~~~~g~~ 371 (463)
+++.+..... .+++.+++.|.++.++|+ ... ..+..++++++.+.+.+.|+++ ++.+ .....|.
T Consensus 269 ~~~~~~~~~~~~t~~~~~~~~aaa~a~l~-----------~~~-~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~g~g~ 335 (398)
T PRK03244 269 AADLLTPGLHGSTFGGNPVACAAALAVLD-----------TIA-SEGLLENAERLGEQLRAGIEAL-GHPLVDHVRGRGL 335 (398)
T ss_pred HHhhccCCCCcCCCCCCHHHHHHHHHHHH-----------HHH-hccHHHHHHHHHHHHHHHHHhc-CCCceeeEeeccE
Confidence 8888865432 567889999999988864 111 1235566777788888888875 3321 1123567
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
++|+.+. .. .... +...+.++||.+.+.. .+.+|++++ .+++|+++++++|++++.+
T Consensus 336 ~~~i~~~--~~-----------~~~~-~~~~l~~~Gv~~~~~~-------~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 336 LLGIVLT--AP-----------VAKA-VEAAAREAGFLVNAVA-------PDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred EEEEEEe--cc-----------HHHH-HHHHHHHCCeEEeecC-------CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 7775543 11 1233 4455677899998831 237999987 7889999999999999876
Q ss_pred HH
Q 041151 450 FM 451 (463)
Q Consensus 450 ~~ 451 (463)
.+
T Consensus 395 ~~ 396 (398)
T PRK03244 395 AA 396 (398)
T ss_pred cc
Confidence 54
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=217.98 Aligned_cols=309 Identities=12% Similarity=0.112 Sum_probs=210.1
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ccCC----CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---C
Q 041151 82 PADAIARAKHYLSLTSGGLG-AYSD----SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~-~Y~~----~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~ 153 (463)
|+.+++++.+.+.....+.. .|.. ..-..++|+.+|++++ .++++|++|+|+++++..++.+++. +
T Consensus 13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~i~~~~g~t~a~~~~~~~~~~~~~~ 86 (381)
T PRK02948 13 SKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIG------GEEQGIYFTSGGTESNYLAIQSLLNALPQ 86 (381)
T ss_pred CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCcHHHHHHHHHHHHHHhccC
Confidence 88899999887765311111 1110 1113467777777775 5788999999999999999888851 4
Q ss_pred CCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 154 EGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 154 ~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+|+.|+++ .|.++ ....+.+|+ +.|++.+++ ++++|++++|+||||.+++
T Consensus 87 ~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~-~~l~~~l~~------~~~lv~~~~~~n~tG~~~~--- 156 (381)
T PRK02948 87 NKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRL-VDLERAITP------DTVLASIQHANSEIGTIQP--- 156 (381)
T ss_pred CCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCH-HHHHHhcCC------CCEEEEEECCcCCcEeehh---
Confidence 68988885 35555 234567899 999999876 7899999999999999988
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++|.++|+++++++++|+++..... ...+ .+.+..+++.|+||.+ |++| +|++++ ++
T Consensus 157 ~~~I~~l~~~~~~~vivD~~~~~g~~-----~~~~-----------~~~~~d~~~~s~~K~~-gp~G--~G~l~~---~~ 214 (381)
T PRK02948 157 IAEIGALLKKYNVLFHSDCVQTFGKL-----PIDV-----------FEMGIDSLSVSAHKIY-GPKG--VGAVYI---NP 214 (381)
T ss_pred HHHHHHHHHHcCCEEEEEChhhcccc-----ccCc-----------ccCCCCEEEecHHhcC-CCCc--EEEEEE---cC
Confidence 56777888899999999987664211 1121 2223457889999987 8888 799885 44
Q ss_pred hH-HHHHHh----hhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Q 041151 294 KT-VDEIYK----IAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT 367 (463)
Q Consensus 294 ~~-~~~l~~----~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~ 367 (463)
++ ...+.. ... ..++++.+.+.++.++++ ...++.++.+++++++++++.+.|+++ |+.+...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~ 283 (381)
T PRK02948 215 QVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAE----------NILKNMQEESLRFKELRSYFLEQIQTL-PLPIEVE 283 (381)
T ss_pred CCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEe
Confidence 43 111110 001 245678888888887764 223456678889999999999999988 6655432
Q ss_pred C-ceeEE--eeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC----------------CCCcEEEEE
Q 041151 368 E-GAMYS--FPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK----------------EGIFHLRTT 428 (463)
Q Consensus 368 ~-g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~----------------~~~~~lRis 428 (463)
. .++.+ .+.+..+. . +..++. ..|.++||.+++|..|... ...+++|+|
T Consensus 284 ~~~~~~~~~i~~~~~~~----------~-~~~~~~-~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis 351 (381)
T PRK02948 284 GHSTSCLPHIIGVTIKG----------I-EGQYTM-LECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFS 351 (381)
T ss_pred CCCccCcCCEEEEEeCC----------C-CHHHHH-HhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEE
Confidence 2 22211 11112121 0 133333 4467889999998864210 123589999
Q ss_pred ec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 429 IL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
++ ++++|++++++.|++++++++
T Consensus 352 ~~~~~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 352 FGQQTTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99 799999999999999876654
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=215.29 Aligned_cols=218 Identities=15% Similarity=0.138 Sum_probs=163.5
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------c
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------F 162 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~ 162 (463)
+..|+.+. ...|++.||++.+ .+++++++|+++++..++.+++ ++||+|+++ .
T Consensus 77 y~R~~~Pt-~~~Le~~lA~leg--------~~~~iv~~sG~~Ai~~~l~al~-~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~ 146 (427)
T PRK07049 77 YSRFNHPN-SEIVEDRLAVYEG--------AESAALFSSGMSAIATTLLAFV-RPGDVILHSQPLYGGTETLLAKTFRNF 146 (427)
T ss_pred ccCCCCcC-HHHHHHHHHHHhC--------CCcEEEEccHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHhc
Confidence 45666654 5799999999874 4578888888999999999998 999999997 2
Q ss_pred CceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh---CCeEEEeccccccccc
Q 041151 163 HTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ---ENLVLLGDEVYQQNIY 239 (463)
Q Consensus 163 g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~---~~~~vi~Deay~~~~~ 239 (463)
|+++..-....|. +.+++.+.+.... +++|+|++++||||||.+++.+++.+|++.|++ ++++||+||+|....+
T Consensus 147 Gi~~v~~~~~~d~-~~l~~~l~~~~~~-~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~ 224 (427)
T PRK07049 147 GVGAVGFADGLSE-AAIGAAAEAAAAK-GRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF 224 (427)
T ss_pred CcEEEEEeCCCCH-HHHHHHHHhhccC-CCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccccc
Confidence 4443111123577 8888777542111 168999999999999999999999999988654 6899999999876432
Q ss_pred CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHH
Q 041151 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMG 318 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~ 318 (463)
. . ++ . . +..|+++|+||.++|++|+|+||++ +++++++.+.+.+. ...+.+++.|.++.
T Consensus 225 -~-~---pl-~---------~--g~divv~S~SK~~gG~~glr~G~vv---~~~~l~~~l~~~~~~~g~~ls~~~a~l~~ 284 (427)
T PRK07049 225 -Q-K---PL-E---------H--GADLSVYSLTKYVGGHSDLVAGAVL---GRKALIRQVRALRSAIGTQLDPHSCWMLG 284 (427)
T ss_pred -C-C---cc-c---------c--CCCEEEEcCceeecCCCCcEEEEEE---CCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1 1 11 1 1 1348889999999447999999999 68999999988775 45668888888887
Q ss_pred HhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 319 LMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
..|+ . +..+.++..++++.+.+.|++.|++.
T Consensus 285 r~L~-----------t---l~~R~~~~~~~a~~la~~L~~~p~V~ 315 (427)
T PRK07049 285 RSLE-----------T---LVLRMERANRNARAVAEFLRDHPKVE 315 (427)
T ss_pred cCCC-----------h---HHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 7764 1 22234556888999999999887654
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-23 Score=207.39 Aligned_cols=313 Identities=15% Similarity=0.094 Sum_probs=206.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCC----CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRG----IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG--EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~g 155 (463)
++++++++.+++.........+....| +.+|++.+|++++ .+..++++++++++..++..+. . +|
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g--------~~~~~~~~SG~~An~~ai~~l~-~~~~g 131 (406)
T PRK13393 61 HPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG--------KEAALLFTSGYVSNWAALSTLG-SRLPG 131 (406)
T ss_pred CHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHhh-cCCCC
Confidence 789999999988875322112222223 3566677776653 2444555555678999998776 4 78
Q ss_pred CEEEEc-------------cCceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 156 DGVVLL-------------FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 156 d~Vlvp-------------~g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+.|+++ .|.++.. -...|. +.+++.++... ..++++|++++++||+|.+.+ +++|.++|+
T Consensus 132 ~~I~~~~~~H~s~~~~~~~~g~~~~~-~~~~d~-~~l~~~l~~~~--~~~~~~v~~~~v~~~~G~~~~---l~~i~~l~~ 204 (406)
T PRK13393 132 CVILSDELNHASMIEGIRHSRAEKRI-FRHNDP-ADLERKLSDLD--PHRPKLVAFESVYSMDGDIAP---IAEICDVAE 204 (406)
T ss_pred CEEEEccchhHHHHHHHHHcCCeEEE-eCCCCH-HHHHHHHHhcc--CCCCEEEEEcCCCCCCCchhC---HHHHHHHHH
Confidence 877775 1222100 011367 88888776421 115788999999999999988 777788888
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
++++++|+||+|+...++ ... ..+... .++ .+ ..+|+++||||.| |++| ||++ +++++++.+...
T Consensus 205 ~~~~~livDea~~~g~~g-~~G-~g~~~~-~~~----~~-~~~i~~~tlsKa~-g~~G---G~~~---~~~~~~~~l~~~ 269 (406)
T PRK13393 205 KHGAMTYLDEVHAVGLYG-PRG-GGIAER-EGL----AD-RLTIIEGTLAKAF-GVMG---GYIT---GSAALCDFIRSF 269 (406)
T ss_pred HcCCEEEEECCccccccC-CCC-Cchhhh-cCC----CC-CCeEEEEeCchhh-cccC---ceee---CCHHHHHHHHHh
Confidence 999999999999865552 211 112111 111 21 2368889999999 7777 9998 688999888776
Q ss_pred hh-h--cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 303 AS-I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 303 ~~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
.. . +.+.++..+.++.++|+ +.+.....+.+++++++++.+.|++. |+.+..+.+.++.+ .+.
T Consensus 270 ~~~~~~t~~~~p~~~aa~~aaL~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i~~v-~~~- 335 (406)
T PRK13393 270 ASGFIFTTSLPPAVAAGALASVR-----------HLKASSAERERHQDRVARLRARLDKA-GIPHLPNPSHIVPV-MVG- 335 (406)
T ss_pred CcCceecCccCHHHHHHHHHHHH-----------HHhhCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCeEEE-EeC-
Confidence 54 1 23445566777766663 12111223456788889999999887 77777777776543 222
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
... +..++...+++++||.+.++.....+.+..++||++. ++++|+++++++|+++++++
T Consensus 336 -~~~----------~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 336 -DPV----------LCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred -CHH----------HHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 110 1344555555557999998765554445568999999 89999999999999987654
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=209.97 Aligned_cols=297 Identities=13% Similarity=0.138 Sum_probs=197.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC-CCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS-RGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
|+.+++++.+.+.. ..|+.. .-..++++.++++++ ++++ .+++++|+++++..++.+++ ++||.|+
T Consensus 11 ~~~v~~a~~~~~~~-----~~~~~~~~~~~~~~~~la~~~g------~~~~~~~~~~~~~t~al~~~~~~~~-~~g~~vl 78 (356)
T cd06451 11 PPRVLKAMNRPMLG-----HRSPEFLALMDEILEGLRYVFQ------TENGLTFLLSGSGTGAMEAALSNLL-EPGDKVL 78 (356)
T ss_pred CHHHHHHhCCCccC-----CCCHHHHHHHHHHHHHHHHHhc------CCCCCEEEEecCcHHHHHHHHHHhC-CCCCEEE
Confidence 78888887544322 223221 113456666666664 4344 57788888999999999997 8999999
Q ss_pred Ec---------------cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 160 LL---------------FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 160 vp---------------~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++ .|.++ + +..+.+|+ +.+++.+++. ++++|++++|+||||.+++ +++|.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~l~~~i~~~-----~~~~v~i~~~~~~~G~~~~---~~~i~~~ 149 (356)
T cd06451 79 VGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSP-EEIAEALEQH-----DIKAVTLTHNETSTGVLNP---LEGIGAL 149 (356)
T ss_pred EecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCH-HHHHHHHhcc-----CCCEEEEeccCCCcccccC---HHHHHHH
Confidence 86 34444 2 23467899 9999998753 6899999999999999988 5667778
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++|++|++|++|+.. .. +.++... + ..+++.|.+|++ +.| .++||+++ ++++++.+.
T Consensus 150 a~~~~~~li~D~~~~~g----~~-~~~~~~~--------~---~d~~~~s~~K~l-~~p-~g~G~l~~---~~~~~~~~~ 208 (356)
T cd06451 150 AKKHDALLIVDAVSSLG----GE-PFRMDEW--------G---VDVAYTGSQKAL-GAP-PGLGPIAF---SERALERIK 208 (356)
T ss_pred HHhcCCEEEEeeehhcc----Cc-ccccccc--------C---ccEEEecCchhc-cCC-CCcceeEE---CHHHHHHHH
Confidence 88999999999998742 11 1122111 1 235678899999 433 24899995 778877775
Q ss_pred h---hhh----------------hc-ccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 301 K---IAS----------------IA-LSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 301 ~---~~~----------------~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
. ... .. .+++...+.++.++++ ... ...+...++..++++++.+.|.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~----------~l~~~~~~~~~~~~~~~~~~l~~~L~~~ 278 (356)
T cd06451 209 KKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALD----------LILEEGLENRWARHRRLAKALREGLEAL 278 (356)
T ss_pred hcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 3 100 01 1223333444445442 111 124567778888899999999887
Q ss_pred CCcccccCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhc-CeEeeCCCCCCCCCCCcEEEEEec--CCc
Q 041151 360 RNVVCNFTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEAT-GISTVPGSGFGQKEGIFHLRTTIL--PAE 433 (463)
Q Consensus 360 pg~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gI~v~pg~~f~~~~~~~~lRis~~--~~~ 433 (463)
|+.+..+. ++.++|+.+ +.+ .+...++.. |.++ ||.+.+|..+.. .+++|+|++ +++
T Consensus 279 -g~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~-L~~~~gI~~~~g~~~~~---~~~iRis~~~~~~~ 341 (356)
T cd06451 279 -GLKLLAKPELRSPTVTAVLV--PEG----------VDGDEVVRR-LMKRYNIEIAGGLGPTA---GKVFRIGHMGEATR 341 (356)
T ss_pred -CCeeccCcccCCCceEEEEC--CCC----------CCHHHHHHH-HHHhCCEEEeccccccc---CCEEEEecCCCCCH
Confidence 77765432 344555433 321 124455544 5555 999999875432 248999998 788
Q ss_pred CcHHHHHHHHHHHH
Q 041151 434 EDMPAIMESFKKFN 447 (463)
Q Consensus 434 e~i~~~~~~l~~~l 447 (463)
+++++++++|++++
T Consensus 342 e~v~~~~~~l~~~~ 355 (356)
T cd06451 342 EDVLGVLSALEEAL 355 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=212.97 Aligned_cols=307 Identities=16% Similarity=0.173 Sum_probs=199.9
Q ss_pred cHHHHHHHHHHhhhcCC-CCCccCCCCC----CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH---hcC
Q 041151 82 PADAIARAKHYLSLTSG-GLGAYSDSRG----IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV---IRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~-~~~~Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~~ 153 (463)
|+.+++++.+.+..... ....|....+ ..++|+.++++++ .++++|++++|+++++..++.++ + +
T Consensus 30 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~------~~~~~v~~~~~~t~~l~~~~~~~~~~~-~ 102 (397)
T TIGR01976 30 PQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLN------ADPPEVVFGANATSLTFLLSRAISRRW-G 102 (397)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC------CCCCeEEEeCCHHHHHHHHHHHHHhcC-C
Confidence 88999999888765321 1133554333 3477777777775 45568999999999998887776 4 7
Q ss_pred CCCEEEEc-----------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 154 EGDGVVLL-----------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 154 ~gd~Vlvp-----------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
|||+|+++ .|+++ + ...+.+|+ +.+++.+++ ++++|++++|+||||.+++
T Consensus 103 ~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~i~~------~~~lv~i~~~~n~tG~~~~- 174 (397)
T TIGR01976 103 PGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHP-DDLASLLSP------RTRLVAVTAASNTLGSIVD- 174 (397)
T ss_pred CCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCH-HHHHHhcCC------CceEEEEeCCCCCCCccCC-
Confidence 99999996 35544 2 22577899 999999976 7999999999999999987
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 291 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 291 (463)
+++|.++|+++|+++++|+++... .....+... +..+++.|++|++ | .|+|++++
T Consensus 175 --~~~i~~~~~~~~~~~ivD~a~~~~-----~~~~~~~~~-----------~~d~~~~s~~K~~-g---~~~G~l~~--- 229 (397)
T TIGR01976 175 --LAAITELVHAAGALVVVDAVHYAP-----HGLIDVQAT-----------GADFLTCSAYKFF-G---PHMGILWG--- 229 (397)
T ss_pred --HHHHHHHHHHcCCEEEEehhhhcc-----ccCCCHHHc-----------CCCEEEEechhhc-C---CceEEEEE---
Confidence 777888888999999999998531 112222221 1236678999977 4 46999984
Q ss_pred ChhHHHHHHhhhh-hc----------ccCChHHHHHHHHhcC---CCCC-CCch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 292 PPKTVDEIYKIAS-IA----------LSPNVPAQIFMGLMVN---PLKP-GDIS-YEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 292 ~~~~~~~l~~~~~-~~----------~~~~~~~q~~~~~~l~---~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
++++++.+..... .. .+++.....++..+++ .... ..+. ........+..+++..+.++++.+.
T Consensus 230 ~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 309 (397)
T TIGR01976 230 RPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVG 309 (397)
T ss_pred cHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888777654321 10 1122222222323221 1000 0000 0011112455677777888899999
Q ss_pred hhcCCCcccccC-----CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC--------CCCCC
Q 041151 356 FNSCRNVVCNFT-----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG--------QKEGI 422 (463)
Q Consensus 356 L~~~pg~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~--------~~~~~ 422 (463)
|++++++++..+ .++++ .+.+. .. +..+ +.+.|.++||.++.|..|. .+...
T Consensus 310 L~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~-----------~~~~-l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~ 374 (397)
T TIGR01976 310 LSDLPGVTLYGVARLAARVPTV-SFTVH--GL-----------PPQR-VVRRLADQGIDAWAGHFYAVRLLRRLGLNDEG 374 (397)
T ss_pred HhcCCCEEEeCCCCccCCCceE-EEEeC--Cc-----------CHHH-HHHHHHHCCeEEEeCccchHHHHHHhCCCCCC
Confidence 988867887654 34443 32222 10 1233 4455778899999887664 22234
Q ss_pred cEEEEEec--CCcCcHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESF 443 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l 443 (463)
+++|||+. ++++|++++++.|
T Consensus 375 ~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 375 GVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred CeEEEEeeccCCHHHHHHHHHhC
Confidence 58999998 7889999988764
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=206.65 Aligned_cols=299 Identities=13% Similarity=0.108 Sum_probs=203.6
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHHHHHhcCCCCEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTLNCVIRGEGDGV 158 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~gd~V 158 (463)
+++.+.+++...... ....|. .-...+|+.++++++ ++++ .|++++|+++++..++..++ .++|.|
T Consensus 10 ~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~la~~~~------~~~~~~~i~~~~~gt~~l~~~~~~~~-~~~~~v 77 (355)
T TIGR03301 10 TSATVRDAMLVDWCH---WDSEFN--DVTDQVRDRLLALAG------GDDNHTCVLLQGSGTFAVEATIGSLV-PRDGKL 77 (355)
T ss_pred CCHHHHHHhhhhccC---CCHHHH--HHHHHHHHHHHHHhc------CCCCCcEEEEeCCcHHHHHHHHHhcc-CCCCeE
Confidence 366777766552221 112343 224577777777775 4443 68889999999999999997 788876
Q ss_pred EEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 159 VLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 159 lvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
++. .|.++ ...++.+|+ +.+++.+++. ++++.+++++++||||...+ +++|++
T Consensus 78 i~~~~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~d~-~~l~~~l~~~----~~~~~v~~~~~~~~~G~~~~---~~~i~~ 149 (355)
T TIGR03301 78 LVLINGAYGERLAKICEYLGIPHTDLNFSEYEPPDL-NRIEEALAAD----PDITHVATVHHETTTGILNP---LEAIAK 149 (355)
T ss_pred EEECCCchhhHHHHHHHHcCCceEEEecCCCCCCCH-HHHHHHHHhC----CCceEEEEEecCCcccchhH---HHHHHH
Confidence 663 34433 234678899 9999998751 25677888899999999877 678888
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|+++++++|+|++++... . ..++.. .+..++++|+||+++|++| +||+++ ++++++.+
T Consensus 150 l~~~~~~~livD~~~s~g~----~-~~~~~~-----------~~~d~~~~s~~K~l~~~~G--~g~~~~---~~~~~~~~ 208 (355)
T TIGR03301 150 VARSHGAVLIVDAMSSFGA----I-PIDIEE-----------LDVDALIASANKCLEGVPG--FGFVIA---RRDLLEAS 208 (355)
T ss_pred HHHHcCCEEEEEeccccCC----c-ccchhh-----------cCccEEEecCCcccccCCc--eeEEEE---CHHHHHHh
Confidence 9999999999999876421 1 122221 2245789999998756667 699994 88888877
Q ss_pred Hhhh------------------hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Q 041151 300 YKIA------------------SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 300 ~~~~------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
.... ...++++...+.++..+++ .+..+ .++.+++++++++++.+.|+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~~~~~~L~~~ 278 (355)
T TIGR03301 209 AGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALE----------ELEAEGGVPARIARYRRNRELLVDGLRAL 278 (355)
T ss_pred hCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHH----------HHHHcccHHHHHHHHHHHHHHHHHHHHHc
Confidence 6210 1123556666666666653 12222 4556778899999999999887
Q ss_pred CCcccccC---CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcC
Q 041151 360 RNVVCNFT---EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEE 434 (463)
Q Consensus 360 pg~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e 434 (463)
|+.+..+ .+++++|+.+ |... ..+...+.+.|.++||.+.+|..+.. .++||++. .+.+
T Consensus 279 -g~~~~~~~~~~~~~~~~~~~--~~~~---------~~~~~~~~~~l~~~gi~i~~~~~~~~----~~iRis~~~~~~~~ 342 (355)
T TIGR03301 279 -GFQPLLPERWQSPIIVSFLY--PDDP---------DFDFDDFYQELKERGFVIYPGKLTLA----DTFRIGTIGEIDAA 342 (355)
T ss_pred -CCeeecCCCCCCCcEEEEEC--CCCC---------cchHHHHHHHHHHCCEEEECCccccc----cEEEEecCCCCCHH
Confidence 7775433 2445666443 3210 01223455667888999999875542 48999985 6889
Q ss_pred cHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKF 446 (463)
Q Consensus 435 ~i~~~~~~l~~~ 446 (463)
+++++++.|+++
T Consensus 343 ~i~~~~~~l~~~ 354 (355)
T TIGR03301 343 DIERLLEAIKDA 354 (355)
T ss_pred HHHHHHHHHHhh
Confidence 999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-23 Score=211.09 Aligned_cols=304 Identities=14% Similarity=0.114 Sum_probs=201.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+.+.+.. .++.... .+...++++.+.+.. ..+.+++++++++++..+++.... .++
T Consensus 58 ~p~v~~a~~~~~~~~~----~~~~~~~-~~~~~~l~~~l~~~~----~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~ 128 (403)
T PRK05093 58 HPALVKALKEQGEKLW----HISNVFT-NEPALRLAKKLIDAT----FAERVFFANSGAEANEAAFKLARRYACDRHGPE 128 (403)
T ss_pred CHHHHHHHHHHHHhcC----cccCccC-CHHHHHHHHHHHhhC----CCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCC
Confidence 7888999988877521 1111111 222335555554332 236899999999999999986520 022
Q ss_pred -CEEEE-c---cCcee------------------cC--CCcc-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 156 -DGVVL-L---FHTTW------------------KR--QQIG-VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 156 -d~Vlv-p---~g~~~------------------~~--~~~~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
+.|+. . +|... .. .... .|+ +.+++.+.+ ++++|+++ |.||+|.++
T Consensus 129 ~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~aaiiie-p~~~~gg~~ 200 (403)
T PRK05093 129 KTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDL-AAVKAVIDD------HTCAVVVE-PIQGEGGVI 200 (403)
T ss_pred CCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCH-HHHHHHhcC------CeEEEEEe-cccCCCCCc
Confidence 33443 3 33211 00 0011 177 899888865 78888777 888888775
Q ss_pred --CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 210 --SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 210 --s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
+.+.+++|.++|++||+++|+||+|..+.++ +.. .+.... ++ .. -+.||||++ + +|+|+||++
T Consensus 201 ~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~-g~~-~~~~~~--~~----~p-----di~s~sK~l-~-~G~rig~vv 265 (403)
T PRK05093 201 PATPEFLQGLRELCDQHNALLIFDEVQTGMGRT-GDL-FAYMHY--GV----TP-----DILTSAKAL-G-GGFPIGAML 265 (403)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC-ccc-hhhhhc--CC----CC-----CEEEecccc-c-CCcceEEEE
Confidence 8899999999999999999999999987553 221 121111 11 12 146999999 6 899999999
Q ss_pred ecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---Ccc
Q 041151 288 MTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVV 363 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~ 363 (463)
+++++++.+.... ..+++.+++.|.++.+.|+ ... ..+.++.++++++++.+.|+++. ++.
T Consensus 266 ---~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~-----------~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 330 (403)
T PRK05093 266 ---TTAEIASHFKVGTHGSTYGGNPLACAVAEAVFD-----------IIN-TPEVLEGVKARRQRFVDGLQKINQKYGVF 330 (403)
T ss_pred ---EcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH-----------HHh-hccHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 5888988887643 3567789999999988763 121 23456788999999999998751 222
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
...+.+|+++|+.+.-+.. .++.+++.. |.++||.+.|+ +.+++|++++ .++++++++++
T Consensus 331 ~~~~~~G~~~~~~l~~~~~----------~~~~~~~~~-l~~~Gv~v~~~-------g~~~lRl~~~~~~~~~~i~~~~~ 392 (403)
T PRK05093 331 SEIRGMGLLIGAELKPQYK----------GRARDFLNA-AAEEGVMVLVA-------GPDVLRFAPSLVIEEADIDEGLA 392 (403)
T ss_pred EeEeeCceEEEEEecCcch----------hHHHHHHHH-HHHCCeEEecC-------CCCEEEEeCCCCCCHHHHHHHHH
Confidence 2344567888855431110 014456555 45579999873 2348999876 68999999999
Q ss_pred HHHHHHHHH
Q 041151 442 SFKKFNDEF 450 (463)
Q Consensus 442 ~l~~~l~~~ 450 (463)
+|++++.++
T Consensus 393 ~l~~~l~~~ 401 (403)
T PRK05093 393 RFEKAVAKV 401 (403)
T ss_pred HHHHHHHHh
Confidence 999988653
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-23 Score=208.42 Aligned_cols=314 Identities=15% Similarity=0.132 Sum_probs=214.3
Q ss_pred cHHHHHHHHHHhhhcCC---CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc----CC
Q 041151 82 PADAIARAKHYLSLTSG---GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR----GE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~~ 154 (463)
++.+++++.+.+..... ..+.|+. .+...+++++++++. ..+. .++++|++|+|+++++..++.++.. ++
T Consensus 12 ~~~v~~~~~~~~~~~~~n~~~~~~~~~-~~~~~l~~a~~~~~~-~~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~~~ 88 (382)
T TIGR03403 12 DPKVKELMDPFFCDIYGNPNSLHQFGT-ATHPAIAEALDKLYK-GINA-RDLDDIIITSCATESNNWVLKGVYFDEILKG 88 (382)
T ss_pred CHHHHHHHHHHHHhcCcCCccccHHHH-HHHHHHHHHHHHHHH-HcCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhcccC
Confidence 78899999887765311 2234443 456789999988885 2232 2678999999999999999987621 34
Q ss_pred -CCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 155 -GDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 155 -gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+++|+++ .|.++ ....+.+|+ +.+++.+++ +++++++++|+||||.+++
T Consensus 89 ~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~-~~l~~~i~~------~t~lv~~~~~~n~tG~~~~--- 158 (382)
T TIGR03403 89 GKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITA-EQVREAITE------KTALVSVMWANNETGMIFP--- 158 (382)
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCH-HHHHHhccc------CCeEEEEEcccCCCccccC---
Confidence 4678875 46665 234567899 999999887 7899999999999999999
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++|.++|+++|+++++|++++.... +..+. +.+-.+++.|++|.+ |++| +|++++.. ..
T Consensus 159 ~~~I~~la~~~g~~~ivD~a~~~g~~-----~~~~~-----------~~~~D~~~~s~~K~~-gp~G--~g~l~vr~-~~ 218 (382)
T TIGR03403 159 IKEIGEICKERGVLFHTDAVQAIGKI-----PVDVQ-----------KAGVDFLSFSAHKFH-GPKG--VGGLYIRK-GV 218 (382)
T ss_pred HHHHHHHHHHcCCEEEEechhhcCCC-----ccCcc-----------ccCCCEEEEcchhhC-CCCc--eEEEEECC-CC
Confidence 55777788899999999999874221 12221 111237889999976 8888 58887622 11
Q ss_pred hHHHHHH---hhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCc
Q 041151 294 KTVDEIY---KIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEG 369 (463)
Q Consensus 294 ~~~~~l~---~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g 369 (463)
.+...+. ... ...++++.+.+.++..+++ ...+..+...+++++.++++.+.|.++||+.+..+..
T Consensus 219 ~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~----------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~ 288 (382)
T TIGR03403 219 ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMR----------LANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDRE 288 (382)
T ss_pred CCCCcccCCCCCCCcccCCcChHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 1111110 011 1245677777777777663 1222245567888999999999999888988876532
Q ss_pred ---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-------------C---CCcEEEEEec
Q 041151 370 ---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-------------E---GIFHLRTTIL 430 (463)
Q Consensus 370 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-------------~---~~~~lRis~~ 430 (463)
+.++.+.++.. +.... ...|.++||.++.|+.|... . ..+.+|+|+.
T Consensus 289 ~~~~~~~~~~~~~~-------------~~~~~-~~~L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~ 354 (382)
T TIGR03403 289 HRVPNTILISIKGV-------------EGEAM-LWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLS 354 (382)
T ss_pred CCcCCEEEEEeCCC-------------CHHHH-HHhhccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECC
Confidence 22333333310 13333 34478889999988766311 0 1247999999
Q ss_pred --CCcCcHHHHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
++++|++++++.|++++++++.
T Consensus 355 ~~~t~~did~~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 355 RFTTEEEIDYTIEVFKKAVQRLRA 378 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998887654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-23 Score=204.82 Aligned_cols=309 Identities=15% Similarity=0.163 Sum_probs=194.8
Q ss_pred cHHHHHHHHHHhhhcCCC---CCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC
Q 041151 82 PADAIARAKHYLSLTSGG---LGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~---~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd 156 (463)
.+.+++++.+........ .+.... ..-+.++++.+|++++ + +++++|+|+++++..++.+++ ++||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~--~~i~~~~g~t~al~~~l~~~~-~~gd 84 (361)
T cd06452 14 TPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLG------M--DEARVTPGAREGKFAVMHSLC-EKGD 84 (361)
T ss_pred CHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcC------C--ceEEEeCCHHHHHHHHHHHhc-CCCC
Confidence 777777777665332111 111110 1124688888888875 3 789999999999999999997 8999
Q ss_pred EEEEc-------------cCcee---cC---CCcccChHHHHHHHHHHHHhc-CCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 157 GVVLL-------------FHTTW---KR---QQIGVLIINDLQQSVAQARSK-GITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 157 ~Vlvp-------------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~-~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
+|+++ .|+++ +. ..+.+|+ +.+++++++..+. ++++++|++++|+||||...+ +++
T Consensus 85 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~---~~~ 160 (361)
T cd06452 85 WVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITP-EGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD---AKK 160 (361)
T ss_pred EEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCH-HHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---HHH
Confidence 99997 55555 22 1358999 9999998742111 126899999999999998755 778
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
|+++|++++++||+|++|+.... + .+.... +..++++|+||++ + ++.|+||++ .+++++
T Consensus 161 i~~~~~~~~~~vivD~a~~~g~~----~-~~~~~~-----------~~d~~~~s~~K~l-~-~~~~~G~l~---~~~~~~ 219 (361)
T cd06452 161 IAKVCHEYGVPLLLNGAYTVGRM----P-VSGKEL-----------GADFIVGSGHKSM-A-ASAPIGVLA---TTEEWA 219 (361)
T ss_pred HHHHHHHcCCeEEEECCcccCCc----C-CCHHHc-----------CCCEEEecCCccc-c-CCCCeEEEE---ECHHHH
Confidence 88889999999999999985322 1 122221 1348999999999 6 456999999 488888
Q ss_pred HHHHhhhhh-c--------ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-
Q 041151 297 DEIYKIASI-A--------LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF- 366 (463)
Q Consensus 297 ~~l~~~~~~-~--------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~- 366 (463)
+.+.+.... . .+.....+.++.+.+. ...++.+. ..+..++++++.+.|+++||+++..
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~-~~~~~~~~~~l~~~L~~l~g~~v~~~ 288 (361)
T cd06452 220 DIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFP----------HVKERVKR-WDEEVEKARWFVAELEKIEGIKQLGE 288 (361)
T ss_pred HHHhccccccccceeeeeccccCchHHHHHHHHHH----------HHHHHHHH-HHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 888765431 0 1111112333333321 11222222 2233345578899999988888752
Q ss_pred --CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHH
Q 041151 367 --TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESF 443 (463)
Q Consensus 367 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l 443 (463)
...++ +.+ +.+ ....... .......++ .+.|.++||.+.. .+ ...++|++.. .++++++.+++.|
T Consensus 289 ~~~~~n~-~~~--~~~-~~~~~~~-~~~~~~~~~-~~~L~~~gI~~~~---~~---~~~~~ri~~~g~~~e~~~~l~~al 356 (361)
T cd06452 289 KPKNHDL-MFF--ETP-SFDEIAK-KHKRRGYFL-YSELKKRGIHGIK---PG---LTRYFKLSTYGLTWEQVEYVVDAF 356 (361)
T ss_pred CCCCCce-EEE--EcC-Ccchhhh-hccccchhH-HHHHHHcCceEEc---CC---CceEEEEEecCCCHHHHHHHHHHH
Confidence 23333 332 222 1100000 000112234 4556677998532 11 1237999995 6889999999999
Q ss_pred HHHH
Q 041151 444 KKFN 447 (463)
Q Consensus 444 ~~~l 447 (463)
+++.
T Consensus 357 ~~~~ 360 (361)
T cd06452 357 KEIA 360 (361)
T ss_pred HHHh
Confidence 8654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=208.92 Aligned_cols=298 Identities=10% Similarity=0.054 Sum_probs=197.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--------G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~ 153 (463)
++.+.+++.+.+...... ..+. ..+....+++.+.+. ...+.+++++++++|+..+++.... +
T Consensus 58 ~p~v~~ai~~~~~~~~~~-~~~~----~~~~~~~l~~~l~~~----~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~ 128 (396)
T PRK04073 58 HPKIIQALKDQADKVTLT-SRAF----HSDQLGPWYEKVAKL----TGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVE 128 (396)
T ss_pred CHHHHHHHHHHHhhcccc-cccc----CCHHHHHHHHHHHhc----CCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCC
Confidence 788999998888763111 1111 123334444444332 2246899999999999999997631 0
Q ss_pred CC-CEEEEc----cCcee-----cC---------------CC-cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 154 EG-DGVVLL----FHTTW-----KR---------------QQ-IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 154 ~g-d~Vlvp----~g~~~-----~~---------------~~-~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
+| +.|+.. +|... .. .. .-.|+ +.+++.+.+ ++++|+++.++||||.
T Consensus 129 ~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~viiep~~~~~G~ 201 (396)
T PRK04073 129 PNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDL-EALKAAITP------NTAAFLVEPIQGEAGI 201 (396)
T ss_pred CCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCCCH-HHHHHhccc------CeEEEEEcCccCCCCC
Confidence 34 556554 33221 00 00 01167 888888865 7899888899999999
Q ss_pred CCCHH-HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 208 CLSEA-NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 208 ~~s~~-~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+++.+ .+++|.++|++||+++|+||+|..+..+ +. .... ... +. ..-+.+|||.+ |.+|+|+||+
T Consensus 202 ~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~-g~----~~~~-~~~----~~---~pdi~~~sK~l-g~gg~~ig~~ 267 (396)
T PRK04073 202 NIPPEGFLKAARELCKEENVLFIADEIQTGLGRT-GK----LFAC-DWD----NV---TPDMYILGKAL-GGGVFPISCV 267 (396)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcC-cH----HHHh-hhc----CC---CCCEEEecccc-cCCCCcceEE
Confidence 98765 5999999999999999999999976442 11 1111 011 11 11234689999 8888999999
Q ss_pred EecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcc
Q 041151 287 EMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RNVV 363 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg~~ 363 (463)
+ +++++++.+..... .+++.+++.|.++.+.|+ ...+ +.+.++.+++++++.+.|+++ +++.
T Consensus 268 ~---~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~-----------~~~~-~~l~~~~~~~~~~l~~~L~~l~~~~i~ 332 (396)
T PRK04073 268 A---ANRDILGVFTPGSHGSTFGGNPLACAVSIAALE-----------VLEE-EKLPERSLELGEYFKEQLKEIDNPMIK 332 (396)
T ss_pred E---EcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 9 58899888865433 567789999999888874 1111 234566677788888888875 3344
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
...+.| .|+++.+. . ++..++. .|.++||.+.+. +.+++||++. .++++++++++
T Consensus 333 ~~~~~g-~~~~~~~~--~------------~~~~~~~-~l~~~Gv~~~~~-------~~~~iRi~p~l~~t~e~i~~~~~ 389 (396)
T PRK04073 333 EVRGRG-LFIGVELN--E------------PARPYCE-ALKEEGLLCKET-------HETVIRFAPPLVITKEELDWAFE 389 (396)
T ss_pred ceecce-EEEEEEec--c------------hHHHHHH-HHHHCCeEEecC-------CCCEEEEECCcccCHHHHHHHHH
Confidence 445555 44564442 1 1344444 466789999762 1248999965 88999999999
Q ss_pred HHHHHH
Q 041151 442 SFKKFN 447 (463)
Q Consensus 442 ~l~~~l 447 (463)
+|++++
T Consensus 390 ~l~~~l 395 (396)
T PRK04073 390 KIKAVL 395 (396)
T ss_pred HHHHHh
Confidence 998875
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=207.18 Aligned_cols=298 Identities=15% Similarity=0.137 Sum_probs=202.6
Q ss_pred cHHHHHHHHHHhhhcCCCCC----ccCC--CCCCHHHHHHHHHHHHHhcCCCCC-CCcEEEcCCcHHHHHHHHHHHhcC-
Q 041151 82 PADAIARAKHYLSLTSGGLG----AYSD--SRGIPGVRKEVAEFIERRDGYPSD-PELIFLTDGASKGVMQTLNCVIRG- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~----~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~~- 153 (463)
|+.+++++.+.+........ .+++ .....++|+.++++++ .+ +++|++|+|+++++..++.++. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~l~-~~ 84 (373)
T cd06453 12 PQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFIN------APSPDEIIFTRNTTEAINLVAYGLG-RA 84 (373)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCCHHHHHHHHHHHhh-hc
Confidence 78899999887755321111 1111 2234578888888885 44 6799999999999999999997 6
Q ss_pred --CCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 154 --EGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 154 --~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
+|++|+++ .|.++ ...++.+|+ +.+++.+.+ ++++|++++|+||||.+.+
T Consensus 85 ~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~~~tG~~~~ 157 (373)
T cd06453 85 NKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDL-EALEKLLTE------RTKLVAVTHVSNVLGTINP 157 (373)
T ss_pred CCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCH-HHHHHHhcC------CceEEEEeCcccccCCcCC
Confidence 89999996 34444 334567899 999999987 7999999999999999988
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
+++|+++|++++++|++|++|+.... +..+.. .+..+++.|++|++ +. .++||+++
T Consensus 158 ---~~~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~-----------~~~d~~~~s~~K~~-~~--~g~g~~~~-- 213 (373)
T cd06453 158 ---VKEIGEIAHEAGVPVLVDGAQSAGHM-----PVDVQD-----------LGCDFLAFSGHKML-GP--TGIGVLYG-- 213 (373)
T ss_pred ---HHHHHHHHHHcCCEEEEEhhhhcCce-----eeeccc-----------cCCCEEEecccccc-CC--CCcEEEEE--
Confidence 56788888899999999999875322 111111 11236778999998 54 45899984
Q ss_pred CChhHHHHHHhhhhh----------------------cccCChHHHHHHHHhcCCCCCCCchHHHHHH-HHHHHHHHHHH
Q 041151 291 IPPKTVDEIYKIASI----------------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVR-ESKGILESLRR 347 (463)
Q Consensus 291 ~~~~~~~~l~~~~~~----------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~ 347 (463)
++++++.+...... ..+++.....++..+++ ...+ ..+.++++.++
T Consensus 214 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~----------~l~~~g~~~~~~~~~~ 282 (373)
T cd06453 214 -KEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAID----------YLEKIGMEAIAAHEHE 282 (373)
T ss_pred -chHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHH----------HHHHcCHHHHHHHHHH
Confidence 78888776643210 01233334444444432 1111 23556777888
Q ss_pred HHHHHHHHhhcCCCcccccC---CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----
Q 041151 348 RARMMTDGFNSCRNVVCNFT---EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK----- 419 (463)
Q Consensus 348 ~~~~l~~~L~~~pg~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~----- 419 (463)
+++++.+.|+++||+.+..+ .++ ++++.+ +.. +..+ +.+.|+++||.+.+|..+..+
T Consensus 283 ~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~--~~~-----------~~~~-i~~~l~~~gi~i~~g~~~~~~~~~~~ 347 (373)
T cd06453 283 LTAYALERLSEIPGVRVYGDAEDRAG-VVSFNL--EGI-----------HPHD-VATILDQYGIAVRAGHHCAQPLMRRL 347 (373)
T ss_pred HHHHHHHHHhcCCCeEEeCCccccCC-eEEEEE--CCc-----------CHHH-HHHHHHHCCEEeccCccchhHHHHHh
Confidence 89999999999888887633 233 334333 321 1334 445667799999888755321
Q ss_pred CCCcEEEEEec--CCcCcHHHHHHHH
Q 041151 420 EGIFHLRTTIL--PAEEDMPAIMESF 443 (463)
Q Consensus 420 ~~~~~lRis~~--~~~e~i~~~~~~l 443 (463)
...+++|+|++ ++++|++++++.|
T Consensus 348 ~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 348 GVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 12358999999 7999999998764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=197.26 Aligned_cols=312 Identities=17% Similarity=0.151 Sum_probs=215.7
Q ss_pred cHHHHHHHHHHhhhcCC----CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSG----GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
.+.+++++.+++..++. ...-++...-+.+|.+.+|+|++ .+..++.+++..++..++.+|+ +++|.
T Consensus 55 ~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g--------~e~al~f~SGy~AN~~~i~~l~-~~~dl 125 (388)
T COG0156 55 HPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG--------AEAALLFSSGFVANLGLLSALL-KKGDL 125 (388)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC--------CCcEEEEcccchhHHHHHHHhc-CCCcE
Confidence 77899999999988642 22234444445788889999985 4556666666889999999998 89999
Q ss_pred EEEc--------cCcee---cCCCcc-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 158 VVLL--------FHTTW---KRQQIG-VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 158 Vlvp--------~g~~~---~~~~~~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
|+.+ .|++. ....+. -|+ +.||+.+++.+..+++.++|+...-....|.+.+ +.+|++++++|+
T Consensus 126 i~~D~lnHASiidG~rls~a~~~~f~HnD~-~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp---L~~l~~L~~ky~ 201 (388)
T COG0156 126 IFSDELNHASIIDGIRLSRAEVRRFKHNDL-DHLEALLEEARENGARRKLIVTEGVFSMDGDIAP---LPELVELAEKYG 201 (388)
T ss_pred EEEechhhhhHHHHHHhCCCcEEEecCCCH-HHHHHHHHhhhccCCCceEEEEeccccCCCCcCC---HHHHHHHHHHhC
Confidence 9987 44444 111222 466 9999999986433323566666688888999987 777888888999
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS- 304 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~- 304 (463)
+++++||+|+...++ +...... ..+|+ ......|+++||||+| |..| ||+. ++..+++.+.....
T Consensus 202 a~L~VDEAHa~Gv~G-~~GrG~~----e~~g~--~~~~vdi~~gTlsKAl-Gs~G---g~v~---g~~~~~d~L~~~ar~ 267 (388)
T COG0156 202 ALLYVDEAHAVGVLG-PNGRGLA----EHFGL--EPEEVDIIVGTLGKAL-GSSG---GYIA---GSAALIDYLRNRARP 267 (388)
T ss_pred cEEEEEccccccccC-CCCccHH----HHhCC--CCccceEEEEEchhhh-cccC---ceee---CcHHHHHHHHHhCCc
Confidence 999999999999884 2222222 22222 2233579999999999 6555 8888 79999999988754
Q ss_pred hcc--cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChh
Q 041151 305 IAL--SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPK 382 (463)
Q Consensus 305 ~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~ 382 (463)
..+ +.++..-.++...+ +.+++...++++++++...+.+.+... |+.+.+.......+ -+.-+..
T Consensus 268 ~ifStalpP~~aaa~~~al-----------~~l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~~~s~s~I~pv-~~gd~~~ 334 (388)
T COG0156 268 FIFSTALPPAVAAAALAAL-----------RILEEGPERRERLQELAAFFRSLLKAL-GLVLLPSESPIIPV-ILGDEER 334 (388)
T ss_pred eeccCCCCHHHHHHHHHHH-----------HHHHhCHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCeeee-EeCCHHH
Confidence 222 22333333344443 244555678888999999998777665 66654444443332 2332221
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
...+...++++ ||.+.+......+.+...+|+++. ++++||+.+++.|.++
T Consensus 335 ------------a~~~s~~l~~~-Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 335 ------------ALEASRALLEE-GIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred ------------HHHHHHHHHHC-CeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 34555555555 999999887777777889999999 8999999999988764
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=202.96 Aligned_cols=304 Identities=16% Similarity=0.198 Sum_probs=222.1
Q ss_pred cHHHHHHHHHHhhhcCCCCC--ccCCC----CCCHHHHHHHHHHHHHhcCCCCC-CCcEEEcCCcHHHHHHHHHHH---h
Q 041151 82 PADAIARAKHYLSLTSGGLG--AYSDS----RGIPGVRKEVAEFIERRDGYPSD-PELIFLTDGASKGVMQTLNCV---I 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~--~Y~~~----~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l---~ 151 (463)
|..+++++.+.+..+..+.+ .|... .-+.+.|+.+++|++ .+ .++|++|.|++++++.+..++ .
T Consensus 35 p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~------a~~~~eIvft~~tT~aln~va~~l~~~~ 108 (405)
T COG0520 35 PQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLN------ADSSDEIVFTRGTTEALNLVARGLGRSL 108 (405)
T ss_pred CHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCChhHHHHHHHHHhhhhh
Confidence 89999999988765433332 22222 234688999999987 66 489999999999999999998 5
Q ss_pred cCCCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 152 RGEGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 152 ~~~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
.+||+|++. .|.++ ..+++.++. +.++..+++ +||+|.+++-+|.||.+.+
T Consensus 109 -~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~-~~~~~~i~~------~Tklvais~vSn~tG~~~p 180 (405)
T COG0520 109 -KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDL-DALEKLITP------KTKLVALSHVSNVTGTVNP 180 (405)
T ss_pred -cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCH-HHHHHhcCC------CceEEEEECccccccccch
Confidence 799999996 46666 346888999 999998887 8999999999999999987
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
+++|+++|+++|+++++|-+++.... +.++..+ +..+++.|.+|+++|+.| +|.+++
T Consensus 181 ---v~~I~~la~~~ga~v~VDaaq~~~h~-----~idv~~l-----------~~Df~afsgHKwl~gP~G--iGvLy~-- 237 (405)
T COG0520 181 ---VKEIAELAHEHGALVLVDAAQAAGHL-----PIDVQEL-----------GCDFLAFSGHKWLLGPTG--IGVLYV-- 237 (405)
T ss_pred ---HHHHHHHHHHcCCEEEEECccccCcc-----CCCchhc-----------CCCEEEEcccccccCCCc--eEEEEE--
Confidence 88888999999999999999986433 3444332 244899999997657668 899984
Q ss_pred CChhHHHHHHhhhh----------------------hcccCChHHH-HHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHH
Q 041151 291 IPPKTVDEIYKIAS----------------------IALSPNVPAQ-IFMGLMVNPLKPGDISYEQFVRE-SKGILESLR 346 (463)
Q Consensus 291 ~~~~~~~~l~~~~~----------------------~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~ 346 (463)
.+++.+.+..... ...+++.+.+ ..+.++++ ...+. ++.+.++-+
T Consensus 238 -r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~----------~~~~ig~~~i~~~e~ 306 (405)
T COG0520 238 -RKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALD----------YLLEIGMEAIEAHER 306 (405)
T ss_pred -chHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHH----------HHHHHhHHHHHHHHH
Confidence 8888887632110 1122233333 33334432 11222 457788888
Q ss_pred HHHHHHHHHhhcCCCcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC---
Q 041151 347 RRARMMTDGFNSCRNVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK--- 419 (463)
Q Consensus 347 ~~~~~l~~~L~~~pg~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~--- 419 (463)
+..+++.+.|+++|++++..|. ++.+.| .++ .. ....+...|.++||.++.|..|..+
T Consensus 307 ~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF-~v~--~~------------~~~dv~~~L~~~gI~vr~g~~ca~p~~~ 371 (405)
T COG0520 307 ELTEYLLEGLSELPGVEIYGPPDADRGGIVSF-NVK--GI------------HPHDVATLLDEKGIAVRAGHHCAQPLHR 371 (405)
T ss_pred HHHHHHHHHHhcCCCeEEecCCcccCceEEEE-EeC--CC------------CHHHHHHHHHhCCeEEEeccccccHHHH
Confidence 8899999999999999988653 444444 222 11 2233556788889999999888642
Q ss_pred --CCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 420 --EGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 420 --~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
.-...+|+|+. ++++|++++++.|+++.+
T Consensus 372 ~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 372 LLGVDATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred hcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 11234999999 999999999999998764
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=203.76 Aligned_cols=297 Identities=14% Similarity=0.125 Sum_probs=203.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+++++.+++.+.. ..+ .....+++.++++++.+..+ .+.+++++++++++..+++....-+| +.|++
T Consensus 47 ~p~v~~a~~~~~~~~~----~~~-~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~ 117 (377)
T PRK02936 47 HPTVTKAVQEQLDDIW----HVS-NLFTNSLQEEVASLLAENSA----GDLVFFCNSGAEANEAALKLARKHTGKSKIVT 117 (377)
T ss_pred CHHHHHHHHHHHHhcc----ccc-cccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEE
Confidence 7889999998887621 122 23457899999999976432 35899999999999999996421234 44555
Q ss_pred c----cCcee-----c--------------CCCcc--cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-CCHHHH
Q 041151 161 L----FHTTW-----K--------------RQQIG--VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC-LSEANL 214 (463)
Q Consensus 161 p----~g~~~-----~--------------~~~~~--~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~-~s~~~l 214 (463)
. +|... . ...+- .|. +.+++.+.+ ++++|++..+++++|.. .+.+.+
T Consensus 118 ~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~ii~e~i~~~~G~~~~~~~~l 190 (377)
T PRK02936 118 FEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDI-KALKEVMNE------EVAAVMLEVVQGEGGVIPADPAFL 190 (377)
T ss_pred ECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCH-HHHHHhccC------CeEEEEEecccCCCCCccCCHHHH
Confidence 4 22211 0 00011 167 899988875 78999999889998876 578999
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|.++|++||+++|+||+|..+.+. +. ..++... ++ ..+ +.|+||++ + +|+|+||++ ++++
T Consensus 191 ~~l~~l~~~~~~~lI~DEv~~g~g~~-g~-~~~~~~~--~~----~~d-----i~t~sK~l-~-~G~~ig~v~---~~~~ 252 (377)
T PRK02936 191 QEVQTLCKKFGALLIIDEVQTGIGRT-GT-LFAYEQF--GL----DPD-----IVTVAKGL-G-NGIPVGAMI---GKKE 252 (377)
T ss_pred HHHHHHHHHcCCEEEEeccccCCCcC-ch-hhHHHhh--CC----CCc-----EEEEcccc-c-CCCccEEEE---EcHH
Confidence 99999999999999999999876552 22 1111111 11 221 24799999 7 899999999 5888
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCc
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CRNVVCNFTEG 369 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~pg~~~~~~~g 369 (463)
+.+.+..... .+++.+++.|.++.++|+. .. .+...++++++.+.+.+.|++ ++.+....+ .
T Consensus 253 ~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~-----------~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~ 319 (377)
T PRK02936 253 LGTAFGPGSHGSTFGGNPLAMAAAKEVLQV-----------IK-QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRG-K 319 (377)
T ss_pred HHhhccCCCCCCCCCCCHHHHHHHHHHHHH-----------HH-hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEee-c
Confidence 8888865443 4567899999999998741 11 123455666777777777765 232222233 4
Q ss_pred eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 370 AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
|+++|+.+. . +...+...|.++||.+.|+. .+++||++. .+++++++++++|++++
T Consensus 320 g~~~~i~~~--~-------------~~~~~~~~l~~~gv~v~~~g-------~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 320 GLMIGIECT--E-------------EVAPVIEQLREEGLLVLSAG-------PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred ceEEEEEec--c-------------hHHHHHHHHHHCCeEEecCC-------CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 578886553 1 12334556788999998842 348999964 88999999999998753
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=208.34 Aligned_cols=314 Identities=12% Similarity=0.105 Sum_probs=200.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+++... ..|+...+..++..++++.+.+.++. ..++|++++|+++++..++..+.. .+++.|++
T Consensus 54 ~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~ 127 (413)
T cd00610 54 HPEVVEALKEQLAKL----THFSLGFFYNEPAVELAELLLALTPE--GLDKVFFVNSGTEAVEAALKLARAYTGRKKIIS 127 (413)
T ss_pred CHHHHHHHHHHHHhC----cCccCcccCCHHHHHHHHHHHHhCCC--CCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEE
Confidence 788999998888652 34544434556667777777665553 578999999999999999998731 46788888
Q ss_pred c----cCce----------------------e---cCC-------CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCC
Q 041151 161 L----FHTT----------------------W---KRQ-------QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNP 204 (463)
Q Consensus 161 p----~g~~----------------------~---~~~-------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NP 204 (463)
. +|.. + +.+ .+..|+ +.|++.+++. +.++++|+++..+|+
T Consensus 128 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~vi~~p~~~~ 203 (413)
T cd00610 128 FEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDL-EALEEALEEH---PEEVAAVIVEPIQGE 203 (413)
T ss_pred ECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHH-HHHHHHHhcC---CCCEEEEEEccccCC
Confidence 5 2210 1 111 133477 8888888652 114556555555777
Q ss_pred CccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee
Q 041151 205 TGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG 283 (463)
Q Consensus 205 tG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 283 (463)
+|.++ +.+.+++|.++|++|++++|+||+|..+... +. .... . .+ +. ..-+.|+||++ +. |+|+
T Consensus 204 ~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~-g~-~~~~-~---~~----~~---~~d~~t~sK~l-~~-g~~~ 268 (413)
T cd00610 204 GGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRT-GK-MFAF-E---HF----GV---EPDIVTLGKGL-GG-GLPL 268 (413)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-cc-hhhH-h---hc----CC---CCCeEEEcccc-cC-cccc
Confidence 79876 6777999999999999999999999875321 11 1111 1 11 11 11245899999 64 8999
Q ss_pred EEEEecCCChhHHHHH--Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041151 284 GYFEMTNIPPKTVDEI--YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR 360 (463)
Q Consensus 284 G~~~~~~~~~~~~~~l--~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p 360 (463)
||++ +++++++.+ ..... .+++.+++.|.++.+.++ .+.. ..+.++++++.+.+.+.|+++.
T Consensus 269 g~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~-----------~l~~-~~~~~~~~~~~~~l~~~l~~~~ 333 (413)
T cd00610 269 GAVL---GREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLE-----------VLEE-EGLLENAAELGEYLRERLRELA 333 (413)
T ss_pred EEEE---EcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHH
Confidence 9998 588888886 23332 456778888888877763 2222 3456677777777777776641
Q ss_pred ---CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc
Q 041151 361 ---NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED 435 (463)
Q Consensus 361 ---g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~ 435 (463)
++.......+.++++.+..+... ..........+...|.++||.+.|+. ...+|++++ .++++
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~gv~v~~~~-------~~~lR~~~~~~~t~~~ 401 (413)
T cd00610 334 EKHPLVGDVRGRGLMIGIELVKDRAT-----KPPDKELAAKIIKAALERGLLLRPSG-------GNVIRLLPPLIITEEE 401 (413)
T ss_pred hhCCcEEEeecCceEEEEEEecCCCc-----CCcchHHHHHHHHHHHHCCeEEeecC-------CCEEEEECCCcCCHHH
Confidence 11111223445666444321000 00000022334455677899999975 237999888 68899
Q ss_pred HHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFN 447 (463)
Q Consensus 436 i~~~~~~l~~~l 447 (463)
+++++++|++++
T Consensus 402 i~~~~~~l~~~l 413 (413)
T cd00610 402 IDEGLDALDEAL 413 (413)
T ss_pred HHHHHHHHHHhC
Confidence 999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=204.45 Aligned_cols=303 Identities=14% Similarity=0.158 Sum_probs=201.6
Q ss_pred cHHHHHHHHHHhhhcCC--CCCccCC----CCCCHHHHHHHHHHHHHhcCCCCC-CCcEEEcCCcHHHHHHHHHHHhcCC
Q 041151 82 PADAIARAKHYLSLTSG--GLGAYSD----SRGIPGVRKEVAEFIERRDGYPSD-PELIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~--~~~~Y~~----~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
|+.+++++.+.+..... ....|+. ..+..++|+.++++++ .+ +++|++|+|+++++..++.+++ ++
T Consensus 13 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~~v~~~~g~t~al~~~~~~~~-~~ 85 (376)
T TIGR01977 13 PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFN------APSSAHVVFTNNATTALNIALKGLL-KE 85 (376)
T ss_pred CHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhC------cCCCCeEEEeCCHHHHHHHHHHhcc-CC
Confidence 78899998887776321 1223433 2456688888888885 33 3589999999999999999987 89
Q ss_pred CCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 155 GDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 155 gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
||+|+++ +|.++ ....+.+|. +.+++.+++ ++++|++++|+||||.+++
T Consensus 86 gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~~~~------~~~~v~~~~~~n~tG~~~~--- 155 (376)
T TIGR01977 86 GDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISP-ERIKRAIKT------NTKLIVVSHASNVTGTILP--- 155 (376)
T ss_pred CCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCH-HHHHHhcCC------CCeEEEEECCCCCccccCC---
Confidence 9999996 26555 234567899 999999876 7999999999999999998
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++|.++|+++|+++|+|++++.... +..+.. .+-.+++.|++|++++.+| +|.+++ .+.
T Consensus 156 ~~~i~~l~~~~~~~livD~a~~~g~~-----~~~~~~-----------~~~D~~~~s~~K~l~~p~g--~g~l~~--~~~ 215 (376)
T TIGR01977 156 IEEIGELAQENGIFFILDAAQTAGVI-----PIDMTE-----------LAIDMLAFTGHKGLLGPQG--TGGLYI--REG 215 (376)
T ss_pred HHHHHHHHHHcCCEEEEEhhhccCcc-----CCCchh-----------cCCCEEEecccccccCCCC--ceEEEE--cCC
Confidence 55677888999999999999986432 112211 1234788999999854455 566665 343
Q ss_pred hHHHHHHhhh----------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 041151 294 KTVDEIYKIA----------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDG 355 (463)
Q Consensus 294 ~~~~~l~~~~----------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 355 (463)
..+..+.... . ...+.+.....++..+++ .+.+. .+.++++.+++.+.+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~l~~~~~~~ 285 (376)
T TIGR01977 216 IKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIK----------FIEKIGIANIAKKECMLTEKLLNG 285 (376)
T ss_pred cCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHH----------HHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3211111100 0 011223333333433432 12221 355677888888999999
Q ss_pred hhcCCCcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhc-CeEeeCCCCCCC-------CCCCc
Q 041151 356 FNSCRNVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEAT-GISTVPGSGFGQ-------KEGIF 423 (463)
Q Consensus 356 L~~~pg~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gI~v~pg~~f~~-------~~~~~ 423 (463)
|.+.+|+.+..+. ....+++.+ +.. +..++ ...|.++ ||.+.+|..+.. ....+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-----------~~~~~-~~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~ 351 (376)
T TIGR01977 286 LREINKVKIYGPADPANRVGVVSFTV--EGI-----------DSEEV-ADILDEKFDIATRTGLHCAPLAHKTIGTFATG 351 (376)
T ss_pred HhcCCCeEEeCCCCccccCCeEEEEE--CCC-----------CHHHH-HHHHhccCCEEEEcccccchHHHHHhCCCCCC
Confidence 9888788776541 122344333 311 23344 4445554 999999876642 11335
Q ss_pred EEEEEec--CCcCcHHHHHHHHHH
Q 041151 424 HLRTTIL--PAEEDMPAIMESFKK 445 (463)
Q Consensus 424 ~lRis~~--~~~e~i~~~~~~l~~ 445 (463)
.+|+++. ++++|++.++++|++
T Consensus 352 ~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 352 TIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred eEEEecCCCCCHHHHHHHHHHHhh
Confidence 8999999 899999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=203.16 Aligned_cols=305 Identities=14% Similarity=0.150 Sum_probs=204.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC-----CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD-----SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--GE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~-----~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~ 154 (463)
|+.+++++.+.+.....+...... ..-..++|+.++++++ .++++|++|+|+++++..++..+.. .+
T Consensus 12 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~i~~t~~~t~a~~~al~~~~~~~~~ 85 (379)
T TIGR03402 12 DPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLG------AEPDEIIFTSGGTESDNTAIKSALAAQPE 85 (379)
T ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCcHHHHHHHHHHHHHHhcCC
Confidence 788999988876542111111000 1113466677777765 5688999999999999999987641 35
Q ss_pred CCEEEEc----------------cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 155 GDGVVLL----------------FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 155 gd~Vlvp----------------~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
|++|+++ .|.++ + ..++.+|. +.+++.+++ +++++++++++||||.+++.
T Consensus 86 ~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~-~~l~~~i~~------~~~lv~i~~~~n~tG~~~~~--- 155 (379)
T TIGR03402 86 KRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDL-EELRAAITD------DTALVSVMWANNETGTIFPI--- 155 (379)
T ss_pred CCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCH-HHHHHhcCC------CcEEEEEEcccCCeeecccH---
Confidence 6788885 36655 2 33466899 999999976 79999999999999999994
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|.++|+++|+++++|++++.... +..+. +.+-.+++.|.+|.+ |++| +|++++ +++
T Consensus 156 ~~I~~l~~~~g~~vivD~~~~~g~~-----~~~~~-----------~~~~D~~~~s~~K~~-gp~G--~g~l~v---~~~ 213 (379)
T TIGR03402 156 EEIGEIAKERGALFHTDAVQAVGKI-----PIDLK-----------EMNIDMLSLSGHKLH-GPKG--VGALYI---RKG 213 (379)
T ss_pred HHHHHHHHHcCCEEEEECccccccc-----ccCcc-----------cCCCCEEEEcHHHcC-CCCc--eEEEEE---CCC
Confidence 5688889999999999999975221 22221 112347778888955 8778 788876 322
Q ss_pred HHHHHHhhh--------hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccc
Q 041151 295 TVDEIYKIA--------SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CRNVVCN 365 (463)
Q Consensus 295 ~~~~l~~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~ 365 (463)
.. +.... ....+++.....++.++++ ....+.+...++++++++.+.+.|.+ +|++.+.
T Consensus 214 ~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~----------~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 281 (379)
T TIGR03402 214 TR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAE----------LATEHLEEENTRVRALRDRLEAGLLARIPDARLN 281 (379)
T ss_pred CC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEe
Confidence 21 11110 1123344444444444442 23344566778888899999999985 7888776
Q ss_pred cCC-----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CCcE
Q 041151 366 FTE-----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GIFH 424 (463)
Q Consensus 366 ~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~~~ 424 (463)
.+. +.+.+| ++.+. ..+ +...|.++||.+++|..|.... ..+.
T Consensus 282 ~~~~~~~~~~~~~~--~~~~~-------------~~~-~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~ 345 (379)
T TIGR03402 282 GDPTKRLPNTVNIS--FEYIE-------------GEA-ILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGS 345 (379)
T ss_pred CCCccCCCCEEEEE--ecCCC-------------HHH-HHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCce
Confidence 542 223334 33221 333 3456788999999998775421 1357
Q ss_pred EEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 425 LRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 425 lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+|+|++ ++++|++++++.|+++++++.+
T Consensus 346 vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 346 IRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999 8999999999999999887653
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=198.77 Aligned_cols=289 Identities=13% Similarity=0.153 Sum_probs=194.0
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCc------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHT------------ 164 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~------------ 164 (463)
+..|+.+. ...|++.+|++.+ . +..++++|+++++..++ .++ ++||+|+++ ++.
T Consensus 46 y~r~~~pt-~~~le~~la~l~g------~--~~~~~~~sG~~ai~~~~-~ll-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~ 114 (366)
T PRK08247 46 YSRTGNPT-RGVLEQAIADLEG------G--DQGFACSSGMAAIQLVM-SLF-RSGDELIVSSDLYGGTYRLFEEHWKKW 114 (366)
T ss_pred ccCCCCch-HHHHHHHHHHHhC------C--CcEEEEcCHHHHHHHHH-HHh-CCCCEEEEecCCcCcHHHHHHHHhhcc
Confidence 44555543 5789999999975 2 33467777789999876 466 899999997 332
Q ss_pred --eecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCC
Q 041151 165 --TWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 165 --~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~ 242 (463)
++ ......|+ +.+++++++ ++++|++++|+||+|. ..++++|+++|+++++++|+|++|....+.
T Consensus 115 G~~v-~~vd~~d~-~~l~~~i~~------~tklv~le~P~NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~~-- 181 (366)
T PRK08247 115 NVRF-VYVNTASL-KAIEQAITP------NTKAIFIETPTNPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ-- 181 (366)
T ss_pred CceE-EEECCCCH-HHHHHhccc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHcCCEEEEECCCcccccc--
Confidence 22 11112478 999999887 7999999999999764 577999999999999999999999643221
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhc
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMV 321 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 321 (463)
. ++ . .+..|+++|+||+++|.++++.||++. .++++++.+...+. .....+++.|..+...+
T Consensus 182 ~---p~-~-----------~g~di~i~S~sK~~~g~~d~~~G~iv~--~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l 244 (366)
T PRK08247 182 R---PL-E-----------EGADIVIHSATKYLGGHNDVLAGLVVA--KGQELCERLAYYQNAAGAVLSPFDSWLLIRGM 244 (366)
T ss_pred C---ch-h-----------cCCcEEEeecceeccCCCceeeeEEec--ChHHHHHHHHHHHHhcCCCCChHHHHHHHhcc
Confidence 1 11 1 123589999999995555789999984 23678888877665 34566777777776665
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccC-CceeEEeeeccCChhhHHHHhhcCCCChHHHH
Q 041151 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFT-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYC 399 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (463)
+ .+....++++++++.+.+.|++.|++.. ..| .|++|.| .++. ....+ .+....+...++
T Consensus 245 ~--------------tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~~-~~~~~--~~~~~l~~~~~~ 306 (366)
T PRK08247 245 K--------------TLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQD-EEWVN--PFLKSLKLITFA 306 (366)
T ss_pred C--------------cHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EECC-HHHHH--HHHHcCCcceEc
Confidence 4 1222344579999999999999988764 344 8999988 3431 11000 000000111122
Q ss_pred HHHHHhcCeEeeCCCCCCCC----------CCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 400 LRLLEATGISTVPGSGFGQK----------EGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 400 ~~ll~~~gI~v~pg~~f~~~----------~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
..+.....+.+.|++.+... -+.+.+|||++. |+.+.+++.|.+++++
T Consensus 307 ~slg~~~sl~~~p~~~~~~~~~~~~r~~~gi~~~~~R~svGl--E~~~dl~~dl~~al~~ 364 (366)
T PRK08247 307 ESLGGVESFITYPATQTHADIPEEIRIANGVCNRLLRFSVGI--ENVEDLIADLKQAFKQ 364 (366)
T ss_pred cCCCCCceEEECCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 22333456777787655321 024589999996 5788888888888864
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-22 Score=198.95 Aligned_cols=276 Identities=8% Similarity=0.080 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCC--CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------------cCcee----cC
Q 041151 110 PGVRKEVAEFIERRDGYPSDP--ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------------FHTTW----KR 168 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------------~g~~~----~~ 168 (463)
.++|+.++++++ .++ +.|++|+|+++++..++.++. .+||.+++. +|.++ ..
T Consensus 38 ~~~r~~la~l~~------~~~~~~~i~~t~~~t~al~~~~~~l~-~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~ 110 (363)
T TIGR02326 38 EQIRQQLLALAT------AEEGYTSVLLQGSGTFAVEAVIGSAV-PKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTG 110 (363)
T ss_pred HHHHHHHHHHhC------CCCCceEEEEcCCCHHHHHHHHHhcC-CCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC
Confidence 466777777775 444 379999999999999999997 788876663 34444 33
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
.++.+|+ +.++++++.. ++++++.+++++||||..++ +++|.++|+++++++++|++++.. .. +.++
T Consensus 111 ~~~~~d~-~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~g~~livD~~~~~g----~~-~~~~ 177 (363)
T TIGR02326 111 EVEPPDV-VEVEAILAAD----PAITHIALVHCETTTGILNP---IEAVAKLAHRHGKVTIVDAMSSFG----GI-PIDI 177 (363)
T ss_pred CCCCCCH-HHHHHHHhhC----CCccEEEEEeecCCccccCc---HHHHHHHHHHcCCEEEEEcccccc----Cc-ccch
Confidence 4567899 9999998751 14677888899999999998 678888999999999999987642 12 2233
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh------------------hh-hcccC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI------------------AS-IALSP 309 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~------------------~~-~~~~~ 309 (463)
..+ +..+++.|++|+++|++| +||+++ +++.++.+... .+ ..+++
T Consensus 178 ~~~-----------~~D~~~~s~~K~l~~p~G--~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~ 241 (363)
T TIGR02326 178 AEL-----------HIDYLISSANKCIQGVPG--FGFVIA---RQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTS 241 (363)
T ss_pred hhc-----------CccEEEecCccccccCCc--ceEEEE---CHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCC
Confidence 221 234788999999866667 699995 77777665321 00 12356
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcccccC---CceeEEeeeccCChhhH
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRNVVCNFT---EGAMYSFPQIRLPPKAI 384 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~---~g~~~~~~~~~~~~~~~ 384 (463)
+...+.++.++++ .+..+ .++++++++++++++.+.|+++ |+.+..+ ..+...++.+ |..
T Consensus 242 ~~~~~~al~~al~----------~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~-- 306 (363)
T TIGR02326 242 PTHVVHAFAQALL----------ELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYS--PED-- 306 (363)
T ss_pred cHHHHHHHHHHHH----------HHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEEC--CCC--
Confidence 6777777766653 12222 4457788999999999999887 7766543 3444555333 321
Q ss_pred HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c-CCcCcHHHHHHHHHHHH
Q 041151 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~-~~~e~i~~~~~~l~~~l 447 (463)
...+...+.+.|+++||.+.||..+. ..++||++ + .+.+++++++++|++++
T Consensus 307 -------~~~~~~~v~~~L~~~gi~v~~g~~~~----~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 307 -------PDYRFADFYQRLKEQGFVIYPGKVSQ----VDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred -------CCCCHHHHHHHHHHCCEEEECCcCCC----CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 00022334456778899999987653 24799996 4 78999999999998875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=200.50 Aligned_cols=309 Identities=13% Similarity=0.090 Sum_probs=215.4
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
.|+.+++++..... .|. ..+..++++++.+.+.+.+|.+ ..+.+++++|+++++..++..++ ++||+|++
T Consensus 20 ~~~~V~~a~~~~~~-------~~~-~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~-~~Gd~Vlv 89 (401)
T PLN02409 20 IPERVLRAMNRPNE-------DHR-SPAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTL-SPGDKVVS 89 (401)
T ss_pred CCHHHHHHhcCCCC-------CCC-CHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcC-CCCCEEEE
Confidence 36777766643221 222 2356788888888887777753 23478888899999999999987 89999999
Q ss_pred c---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|.++ ...+..+|+ +.+++++++.. .+++++|++++++||||.+++.+++.++++ |
T Consensus 90 ~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~-~~l~~~l~~~~--~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~-~ 165 (401)
T PLN02409 90 FRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADL-DILKSKLRQDT--NHKIKAVCVVHNETSTGVTNDLAGVRKLLD-C 165 (401)
T ss_pred eCCCchhHHHHHHHHHcCCceEEEECCCCCCCCH-HHHHHHHhhCc--CCCccEEEEEeecccccccCCHHHHHHHHh-h
Confidence 7 45555 223445788 99999988510 016899999999999999999777777666 9
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+++|+++|+|++++.... +..+ ++.+..+++.|.+|++++.+ ++||+++ +++.++++..
T Consensus 166 ~~~g~~~vvD~v~s~g~~-----~id~-----------~~~~~D~~~~s~~K~l~~P~--G~G~l~~---~~~~~~~~~~ 224 (401)
T PLN02409 166 AQHPALLLVDGVSSIGAL-----DFRM-----------DEWGVDVALTGSQKALSLPT--GLGIVCA---SPKALEASKT 224 (401)
T ss_pred hccCcEEEEEcccccCCc-----cccc-----------cccCccEEEEcCccccCcCC--CcceeEE---CHHHHHHHhc
Confidence 999999999999874211 1122 22223477788899994434 5999995 8888888764
Q ss_pred hhh------------------h-cccCChHHHHHHHHhcCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 302 IAS------------------I-ALSPNVPAQIFMGLMVNPLKPGDISYEQFVR-ESKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 302 ~~~------------------~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
... . ..+++...+.++..+++ ...+ -.++++++++++++++.+.|+++ |
T Consensus 225 ~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~----------~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g 293 (401)
T PLN02409 225 AKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALD----------LIFEEGLENVIARHARLGEATRLAVEAW-G 293 (401)
T ss_pred CCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 221 0 22455556666666653 1222 25678889999999999999887 8
Q ss_pred cccccCC-c---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc
Q 041151 362 VVCNFTE-G---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED 435 (463)
Q Consensus 362 ~~~~~~~-g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~ 435 (463)
+++..+. . +...+ +.+|.+. +..++...+++++||.+.+|..-. ....+||+.. .+.++
T Consensus 294 ~~~~~~~~~~~s~~v~~--~~~p~~~----------~~~~l~~~l~~~~~i~i~~G~~~~---~~~~~Rig~~g~~~~~~ 358 (401)
T PLN02409 294 LKLCTKKPEWRSDTVTA--VVVPEGI----------DSAEIVKNAWKKYNLSLGLGLNKV---AGKVFRIGHLGNVNELQ 358 (401)
T ss_pred CeeccCChhhcccceEE--EeCCCCC----------CHHHHHHHHHHhCCEEEEcCCCcc---cCCEEEEcCCCCCCHHH
Confidence 8776542 2 22334 3444331 245566677789999999887531 2247999999 78999
Q ss_pred HHHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDEF 450 (463)
Q Consensus 436 i~~~~~~l~~~l~~~ 450 (463)
+..++.+|.+++.++
T Consensus 359 ~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 359 LLGALAGVEMVLKDV 373 (401)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999887754
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=196.34 Aligned_cols=280 Identities=10% Similarity=0.051 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCC--CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------------cCcee---c-
Q 041151 109 IPGVRKEVAEFIERRDGYPSDP--ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------------FHTTW---K- 167 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------------~g~~~---~- 167 (463)
..++|+.++++++ .++ +.|++++|+++++..++.++. .+||.|+++ .|+++ +
T Consensus 39 ~~~~~~~l~~l~~------~~~~~~~i~~~~~gt~~l~~~~~~l~-~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~ 111 (368)
T PRK13479 39 TASVRAKLVAIAT------GEEGYTCVPLQGSGTFSVEAAIGSLV-PRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDT 111 (368)
T ss_pred HHHHHHHHHHHhC------CCCCceEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEEC
Confidence 4677777777765 443 468899999999999999998 899888885 34444 2
Q ss_pred CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccc
Q 041151 168 RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVS 247 (463)
Q Consensus 168 ~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~ 247 (463)
..++.+|+ +.+++.+++. +++++|++++|+||||...+ +++|.++|+++++++|+|+++.. +.. +.+
T Consensus 112 ~~~~~~d~-~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~~~~livDa~~~~----g~~-~~~ 178 (368)
T PRK13479 112 GEDEPPDA-AEVEAALAAD----PRITHVALVHCETTTGILNP---LDEIAAVAKRHGKRLIVDAMSSF----GAI-PID 178 (368)
T ss_pred CCCCCCCH-HHHHHHHHhC----CCCcEEEEEcccCccccccC---HHHHHHHHHHcCCEEEEEccccc----CCc-ccc
Confidence 23467899 9999998751 14678999999999999988 66778888899999999966543 111 122
Q ss_pred hHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh------------------hcccC
Q 041151 248 SKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS------------------IALSP 309 (463)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~------------------~~~~~ 309 (463)
+.. .+..+++.|++|+++|++| +||+++ ++++++.+..... ..+++
T Consensus 179 ~~~-----------~~~d~~v~s~~K~l~g~~G--~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 242 (368)
T PRK13479 179 IAE-----------LGIDALISSANKCIEGVPG--FGFVIA---RRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTP 242 (368)
T ss_pred ccc-----------cCceEEEecCccccccCCC--ceEEEE---CHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCC
Confidence 221 1223677899998767788 699995 8888877654321 11345
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcccccCC---ceeEEeeeccCChhhH
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRNVVCNFTE---GAMYSFPQIRLPPKAI 384 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~---g~~~~~~~~~~~~~~~ 384 (463)
+...+.++.++++ .+.++ .++.++++.++++.+.+.|+++ |+.+..+. .+..+.+.+..+...
T Consensus 243 ~~~~~~~l~~al~----------~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~- 310 (368)
T PRK13479 243 PTHVVAAFYQALL----------ELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPAY- 310 (368)
T ss_pred cHHHHHHHHHHHH----------HHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCCc-
Confidence 5555555555543 11111 3456678899999999999988 77765332 111122112211110
Q ss_pred HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c-CCcCcHHHHHHHHHHHHHHH
Q 041151 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..+ +...|.++||.+.+|..+. ..++|++. + +++++++.+++.|+++++++
T Consensus 311 ---------~~~~-l~~~L~~~gi~v~~g~~~~----~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 311 ---------DFKE-FYERLKEQGFVIYPGKLTQ----VDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred ---------CHHH-HHHHHHHCCEEEecCCCCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 1234 4555777899999876442 24799986 5 78999999999999988754
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-22 Score=197.91 Aligned_cols=312 Identities=13% Similarity=0.134 Sum_probs=200.7
Q ss_pred cHHHHHHHHHHhhhcCCC-----CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC
Q 041151 82 PADAIARAKHYLSLTSGG-----LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd 156 (463)
++.+++++.+........ ...+.....+.++|+.+|++++ .+++++++|+++++..++.+++ ++||
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g--------~~~~~~~~g~t~a~~~al~~l~-~~gd 103 (387)
T PRK09331 33 TPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG--------MDEARVTHGAREGKFAVMHSLC-KKGD 103 (387)
T ss_pred CHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhc-CCCC
Confidence 788899888776442111 1112222346789999999975 2568899999999999999998 8999
Q ss_pred EEEEc-------------cCcee---c---CCCcccChHHHHHHHHHHHHh-cCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 157 GVVLL-------------FHTTW---K---RQQIGVLIINDLQQSVAQARS-KGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 157 ~Vlvp-------------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~-~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
+|+++ .|+++ + +.++.+|+ +.+++.+++..+ .++++++|++++|+||||...+ +++
T Consensus 104 ~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~---l~~ 179 (387)
T PRK09331 104 YVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITP-EAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD---AKK 179 (387)
T ss_pred EEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCH-HHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc---HHH
Confidence 99997 56665 2 35677999 999999975311 1236899999999999998866 788
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
|.++|+++|+++++|++|+.... +.+.... +..+++.|++|++ + ++.++||++ ++++++
T Consensus 180 I~~la~~~g~~livD~a~~~g~~-----~~~~~~~-----------g~D~~~~s~~K~l-~-~~~~~G~l~---~~~~~i 238 (387)
T PRK09331 180 VAKVAHEYGIPFLLNGAYTVGRM-----PVDGKKL-----------GADFIVGSGHKSM-A-ASAPSGVLA---TTEEYA 238 (387)
T ss_pred HHHHHHHcCCEEEEECCcccCCc-----CCCHHHc-----------CCCEEEeeCcccc-c-CCCCEEEEE---ECHHHH
Confidence 88899999999999999985322 1222221 1247899999999 5 455899998 488888
Q ss_pred HHHHhhhh-hc------cc--CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-
Q 041151 297 DEIYKIAS-IA------LS--PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF- 366 (463)
Q Consensus 297 ~~l~~~~~-~~------~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~- 366 (463)
+.+.+... .. ++ .+.....++.+.+ +...+.. ...++..++.+++.+.|++++|+++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal----------~~~~~~~-~~~~~~~~~~~~l~~~L~~l~g~~~~~~ 307 (387)
T PRK09331 239 DKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASF----------PHVVERV-KRWDEEVKKARWFVDELEKIEGFKQLGE 307 (387)
T ss_pred hhcccccCCCcccceeeeceecCchHHHHHHHHH----------HHHHHHH-HHHHHHHHHHHHHHHHHhcCCCEEEecc
Confidence 87755421 00 11 1111222222222 1122222 234455677788999999998988773
Q ss_pred -CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHH
Q 041151 367 -TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFK 444 (463)
Q Consensus 367 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~ 444 (463)
+....+.. +..| .+.+ .......+... +.+.|+++||...+.. ....+|+... .+.++++++++.|+
T Consensus 308 ~~~~~~i~~--~~~~-~~~~-~~~~~~~~~~~-~~~~L~~~gI~~~~~~------~~~i~ri~~~g~t~~di~~l~~aL~ 376 (387)
T PRK09331 308 KPRNHDLMK--FETP-SFDE-IAKKHKRRGFF-LYEELKKRGIHGIKPG------ATKEFKLSTYGLTWEQVEYVADAFK 376 (387)
T ss_pred CcCcCCeEE--EeCC-chhH-Hhhhccccchh-HHHHHHHcCceEEccC------CceEEEEEeccCCHHHHHHHHHHHH
Confidence 22222333 2333 1100 00000011223 4555678899843311 1235677774 68899999999999
Q ss_pred HHHHH
Q 041151 445 KFNDE 449 (463)
Q Consensus 445 ~~l~~ 449 (463)
+++++
T Consensus 377 ~i~~~ 381 (387)
T PRK09331 377 EIAEK 381 (387)
T ss_pred HHHHh
Confidence 88765
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=203.03 Aligned_cols=324 Identities=14% Similarity=0.062 Sum_probs=204.2
Q ss_pred HHHHHHHHHHh----cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCC
Q 041151 26 LYLRASELQKE----GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLG 101 (463)
Q Consensus 26 ~~~~~~~~~~~----~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~ 101 (463)
+.+.+.+++++ +..+++++.|.|+. +. |+.+.++..++ . ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~------------------------~~-----p~~~~~~~~~~--~---~~~ 49 (398)
T cd00613 4 VLRHLKRLASKNKALDQSMSFLGSGTYKH------------------------NP-----PAVIKRNILEN--E---FYT 49 (398)
T ss_pred HHHHHHHHHhcCcCcccCcccccccccCC------------------------cC-----cHHHHHHhccc--c---Ccc
Confidence 44444445433 33469999999996 33 55554444444 2 123
Q ss_pred ccCC-----CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcC-CcHHHHHHHHHHHhcCC--CCEEEEc------------
Q 041151 102 AYSD-----SRGIPGVRKEVAEFIERRDGYPSDPELIFLTD-GASKGVMQTLNCVIRGE--GDGVVLL------------ 161 (463)
Q Consensus 102 ~Y~~-----~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~-G~~~al~~~~~~l~~~~--gd~Vlvp------------ 161 (463)
.|.+ ..|.+++++++++++.+.+|.+ .+++++++ |++++...+..++. .+ ||+|+++
T Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~--~~~v~~~~~g~~~~~~~~~~~~~-~~~~gd~Vl~~~~~h~~~~~~~~ 126 (398)
T cd00613 50 AYTPYQPEISQGRLQALFELQTMLCELTGMD--VANASLQDEATAAAEAAGLAAIR-AYHKRNKVLVPDSAHPTNPAVAR 126 (398)
T ss_pred cCCCCChhhhhhHHHHHHHHHHHHHHHHCCC--ccceeccCchHHHHHHHHHHHHh-cccCCCEEEEcCccCcchHHHHH
Confidence 4555 6899999999999999888853 44676666 44455555555655 66 9999997
Q ss_pred -cC----cee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -FH----TTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -~g----~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.| .++ ....+.+|+ +.+++++.+ ++++|++++|+ |||.+. +.+++|.++|+++|+++|+|+
T Consensus 127 ~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~t~~viv~~~~-~~G~~~--~~l~~i~~la~~~g~~livD~ 196 (398)
T cd00613 127 TRGEPLGIEVVEVPSDEGGTVDL-EALKEEVSE------EVAALMVQYPN-TLGVFE--DLIKEIADIAHSAGALVYVDG 196 (398)
T ss_pred HhcccCCcEEEEeccCCCCCcCH-HHHHHhcCC------CeEEEEEECCC-CCceec--chHHHHHHHHHhcCCEEEEEe
Confidence 33 444 233456899 999998876 79999999985 899984 346999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC---CCceeEEEEecCCChhHHHHHHhh-------
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE---CGQRGGYFEMTNIPPKTVDEIYKI------- 302 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~---~G~R~G~~~~~~~~~~~~~~l~~~------- 302 (463)
++..... ..... ..+..+++.|+||++ +. .|+++||+++ ++++++.+...
T Consensus 197 ~~~~~~~-----~~~~~-----------~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~---~~~~~~~~~~~~~~~~~~ 256 (398)
T cd00613 197 DNLNLTG-----LKPPG-----------EYGADIVVGNLQKTG-VPHGGGGPGAGFFAV---KKELVRFLPGRLVGVTKD 256 (398)
T ss_pred ccccccC-----CCChH-----------HcCCCEEEeeccccC-CCCCCCCCceeEEEE---hhhhHhhCCCCeeccccc
Confidence 8764321 11111 112358999999986 32 2789999995 77776654110
Q ss_pred -----------------------hhhcccC-ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041151 303 -----------------------ASIALSP-NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS 358 (463)
Q Consensus 303 -----------------------~~~~~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 358 (463)
.....+. +...|.+...+... .....++++++++++++++.+.|++
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~----------~~~g~~~~~~~~~~~~~~l~~~L~~ 326 (398)
T cd00613 257 AEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYL----------GPEGLKEIAERAHLNANYLAKRLKE 326 (398)
T ss_pred cCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHh----------CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0001111 12233333322210 1122455778899999999999998
Q ss_pred CCCcccccCCceeE--EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcC
Q 041151 359 CRNVVCNFTEGAMY--SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEE 434 (463)
Q Consensus 359 ~pg~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e 434 (463)
+++.. .+.+.++ ++++++.+.+. +..+++. .|.++||.+.... ..+.+.+|+++. ++++
T Consensus 327 ~~~~~--~~~~~~~~~v~~~~~~~~~~----------~~~~~~~-~L~~~gi~~~~~~----~~~~~~lRis~~~~~t~e 389 (398)
T cd00613 327 VGGVL--PFNGPFFHEFVLRLPPLYGI----------RAEDLAK-ALIDGGFHAPTMY----LPVDGTLMIEPTETETKE 389 (398)
T ss_pred cCCcc--cCCCCeeEEEEEEcCCcchH----------HHHHHHH-hhhhcCccccccc----cCCCCeEEEEcCCCCCHH
Confidence 74443 2334444 34333211010 1344444 4567799764422 123357999999 8999
Q ss_pred cHHHHHHHH
Q 041151 435 DMPAIMESF 443 (463)
Q Consensus 435 ~i~~~~~~l 443 (463)
|++++++.|
T Consensus 390 did~~~~~L 398 (398)
T cd00613 390 ELDALLEAL 398 (398)
T ss_pred HHHHHHHhC
Confidence 999998764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=199.66 Aligned_cols=205 Identities=14% Similarity=0.182 Sum_probs=153.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c---------------CceecCC
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F---------------HTTWKRQ 169 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~---------------g~~~~~~ 169 (463)
-..+|++.+|++++ .+.+++++|+++++..++.+++ ++||+|+++ + |+++ ..
T Consensus 77 t~~~LE~~lA~l~g--------~~~~l~~~sG~~Ai~~al~al~-~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~-~~ 146 (418)
T PLN02242 77 TVLNLGRQMAALEG--------TEAAYCTASGMSAISSVLLQLC-SSGGHVVASNTLYGGTHALLAHFLPRKCNITT-TF 146 (418)
T ss_pred hHHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHh-CCCCEEEEcCCcHHHHHHHHHHhhhhccCceE-EE
Confidence 35788888888874 4667889999999999999998 899999997 1 1111 11
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
....|+ +.+++++++. ++|+|++++|+||||.+.+ +++|+++|++++++||+|++|..+.+ ...
T Consensus 147 ~d~~d~-e~l~~~i~~~-----~tklV~lesp~NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~-------~~~ 210 (418)
T PLN02242 147 VDITDL-EAVKKAVVPG-----KTKVLYFESISNPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVL-------SPA 210 (418)
T ss_pred cCCCCH-HHHHHhcCcC-----CCEEEEEecCCCCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCC-------CHH
Confidence 112377 9999988751 3999999999999999975 78888899999999999999976543 111
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEecCCChhHHHHHHhhhh---hcccCChHHHHHHHHhcCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEMTNIPPKTVDEIYKIAS---IALSPNVPAQIFMGLMVNPLK 325 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~q~~~~~~l~~~~ 325 (463)
.+ + ..|+++|+||.+ +.+|++ +||++ +++++++.+.+.+. ...+.+...|.++..++...
T Consensus 211 ~~--------g---~divv~S~SK~l-~g~g~~~gG~iv---~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~- 274 (418)
T PLN02242 211 RL--------G---ADVVVHSISKFI-SGGADIIAGAVC---GPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP- 274 (418)
T ss_pred Hc--------C---CcEEEEeCcccc-CCCCCceEEEEE---cCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC-
Confidence 11 1 358999999999 778887 58888 68899888876643 23456677788877776421
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 041151 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF 366 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~ 366 (463)
.+..+.+++.++++.+.+.|+++ ++++..
T Consensus 275 -----------tl~~r~~~~~~~a~~la~~L~~~-~~~V~y 303 (418)
T PLN02242 275 -----------HLSLRMKEHCRRAMEYAKRMKEL-GLKVIY 303 (418)
T ss_pred -----------cHHHHHHHHHHHHHHHHHHHHhC-CCEEEC
Confidence 22234567899999999999987 455543
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-21 Score=195.08 Aligned_cols=313 Identities=11% Similarity=0.031 Sum_probs=190.8
Q ss_pred cHHHHHHHHHHhhh-cCC--CCCccC-CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSL-TSG--GLGAYS-DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~-~~~--~~~~Y~-~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
|+.+++++...+.. ++. ....|. ...-...+.+...+.+.+.+| .+..+|++++| ++++..++.+++ +|||+
T Consensus 38 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g--~~~~~i~~~sg-t~al~~~l~~l~-~~gd~ 113 (416)
T PRK00011 38 SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--AEYANVQPHSG-SQANAAVYFALL-KPGDT 113 (416)
T ss_pred CHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC--CCceeeecCCc-hHHHHHHHHHhc-CCCCE
Confidence 88899988765432 110 011111 111122232212223333334 34556766665 679999999997 89999
Q ss_pred EEEc---cC---------------cee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 158 VVLL---FH---------------TTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 158 Vlvp---~g---------------~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
|+++ ++ .++ + .+.+.+|+ +.+++.+++. ++++|++++++|| ...+ +
T Consensus 114 Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~k~v~~~~~~~~--~~~~---~ 182 (416)
T PRK00011 114 ILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDY-DEVEKLALEH-----KPKLIIAGASAYS--RPID---F 182 (416)
T ss_pred EEEeccccCCccccccccccccceeeEeecCcCcccCCcCH-HHHHHHHHhc-----CCCEEEECCCcCC--CccC---H
Confidence 9997 21 122 1 13478999 9999999753 6899988766665 3334 7
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|.++|+++|+++|+|++|.......+..+..+ . ...++++|+||++ +|.|+||++. .+++
T Consensus 183 ~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~-----------~--~~di~~~S~~K~l---~g~~gg~i~~--~~~~ 244 (416)
T PRK00011 183 KRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPV-----------P--HADVVTTTTHKTL---RGPRGGLILT--NDEE 244 (416)
T ss_pred HHHHHHHHHcCCEEEEECcchhcccccCccCCCC-----------C--CCcEEEecCCcCC---CCCCceEEEe--CCHH
Confidence 8888899999999999999864322111111111 1 1237899999977 5899999995 3468
Q ss_pred HHHHHHhhhh-hcccCChH-HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCcee
Q 041151 295 TVDEIYKIAS-IALSPNVP-AQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF-TEGAM 371 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~-~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g~~ 371 (463)
+++.+.+... ...+.+.. .+.++..++. .......++.+++++++++++.+.|++. |+++.. ...++
T Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~---------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~ 314 (416)
T PRK00011 245 LAKKINSAVFPGIQGGPLMHVIAAKAVAFK---------EALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNH 314 (416)
T ss_pred HHHHHHHHhCccccCCccHHHHHHHHHHHH---------HHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCe
Confidence 8888877654 22222222 2222222211 0111234567888999999999999987 777653 12237
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC-CC--CCCCCCcEEEEEe------cCCcCcHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS-GF--GQKEGIFHLRTTI------LPAEEDMPAIMES 442 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~-~f--~~~~~~~~lRis~------~~~~e~i~~~~~~ 442 (463)
++|+.+. +.++ +.+.+.+.|+++||.+..+. .+ ..+.....+|++. +.+++|++.+++.
T Consensus 315 ~~~i~~~-~~~~-----------~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~ 382 (416)
T PRK00011 315 LVLVDLR-SKGL-----------TGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAEL 382 (416)
T ss_pred EEEEeCc-ccCC-----------CHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHH
Confidence 7786553 1110 22335567788999997432 12 1111234689965 2467999999999
Q ss_pred HHHHHHH
Q 041151 443 FKKFNDE 449 (463)
Q Consensus 443 l~~~l~~ 449 (463)
|++++..
T Consensus 383 l~~~~~~ 389 (416)
T PRK00011 383 IADVLDN 389 (416)
T ss_pred HHHHHhc
Confidence 9987665
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=197.02 Aligned_cols=300 Identities=13% Similarity=0.125 Sum_probs=197.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------- 153 (463)
++.+.+++.+.+....... .+.......+|.+.++++. ..+.+++++++++|+..+++++. .
T Consensus 59 ~~~i~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~SGs~A~e~al~~a~-~~~~~~~g~ 128 (401)
T PRK00854 59 HPKILAAMVEQAGRLTLTS-RAFRNDQLAPLYEELAALT--------GSHKVLPMNSGAEAVETAIKAVR-KWGYEVKGV 128 (401)
T ss_pred CHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhhC--------CCCEEEEeCCcHHHHHHHHHHHH-HHHHhccCC
Confidence 7789999998887632111 1111222334555555442 23689999999999999999884 2
Q ss_pred -CC-CEEEEc----cCcee--------c--CCCcc-----------cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 154 -EG-DGVVLL----FHTTW--------K--RQQIG-----------VLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 154 -~g-d~Vlvp----~g~~~--------~--~~~~~-----------~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
+| +.|++. +|... + ...+. .|+ +.|++.+.+ ++++|++++|+||+|
T Consensus 129 ~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~i~~------~~~aii~e~~~~~~G 201 (401)
T PRK00854 129 PEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDA-EALEAAITP------NTVAFLVEPIQGEAG 201 (401)
T ss_pred CCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCCCH-HHHHHHhCC------CeEEEEEccccCCCC
Confidence 23 566665 33221 0 01111 478 999998876 799999999999999
Q ss_pred cCCCH-HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 207 QCLSE-ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 207 ~~~s~-~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
.++++ +.+++|.++|++||+++|+||+|..+.+. +. .+.....++ ..+ +++ +||++ +...+|+||
T Consensus 202 ~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~-g~---~~~~~~~g~----~~D---~~~--~~K~l-~gg~~~ig~ 267 (401)
T PRK00854 202 VIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRT-GK---LLAEEHEGI----EAD---VTL--IGKAL-SGGFYPVSA 267 (401)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC-ch---HhHHhhcCC----CCC---EEE--ecccc-cCCccCeEE
Confidence 99974 45999999999999999999999865441 11 111100111 111 222 47999 544479999
Q ss_pred EEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-
Q 041151 286 FEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV- 363 (463)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~- 363 (463)
++ +++++++.+..... .+++.+++.|.++.+.|+ .+.. ..+.+.++++.+++.+.|+++ +..
T Consensus 268 v~---~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~-----------~l~~-~~~~~~~~~~~~~l~~~L~~~-~~~~ 331 (401)
T PRK00854 268 VL---SNSEVLGVLKPGQHGSTFGGNPLACAVARAALK-----------VLTE-EGMIENAAEMGAYFLEGLRSI-RSNI 331 (401)
T ss_pred EE---EcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHH-----------HHHH-cCHHHHHHHHHHHHHHHHHhh-ccCc
Confidence 99 58888888765433 456678889988888874 2222 236678888889999999886 322
Q ss_pred --cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 364 --CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 364 --~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
...+.|.++.+. +. +.. .+..+++.. |.++||.+.+. +..++|+++. .++++++++
T Consensus 332 ~~~~~g~g~~~~i~-~~-~~~----------~~~~~~~~~-L~~~GV~v~~~-------~~~~lR~~p~~~~t~e~i~~~ 391 (401)
T PRK00854 332 VREVRGRGLMLAVE-LE-PEA----------GGARQYCEA-LKERGLLAKDT-------HDHTIRLAPPLVITREQVDWA 391 (401)
T ss_pred eEEEeccceEEEEE-Ee-cCc----------hhHHHHHHH-HHHCCeEEecC-------CCCEEEEeCCcccCHHHHHHH
Confidence 123455555542 21 111 013455544 55679999652 2248999975 789999999
Q ss_pred HHHHHHHHH
Q 041151 440 MESFKKFND 448 (463)
Q Consensus 440 ~~~l~~~l~ 448 (463)
+++|++++.
T Consensus 392 i~~l~~~l~ 400 (401)
T PRK00854 392 LEQIAKVLA 400 (401)
T ss_pred HHHHHHHhh
Confidence 999998763
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=193.41 Aligned_cols=282 Identities=13% Similarity=0.040 Sum_probs=193.2
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC------------CC--CEEEEc---
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG------------EG--DGVVLL--- 161 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------------~g--d~Vlvp--- 161 (463)
....|....+..++++++++++.+..|.+.+++++++|+|+++++..++.++. . ++ +.|+++
T Consensus 26 ~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~ 104 (345)
T cd06450 26 IDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAAR-DRARKRLKAGGGRGIDKLVIVCSDQA 104 (345)
T ss_pred CCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHH-HHhhhhhhcccccccCCeEEEEcCcc
Confidence 34558888889999999999999888876556689999999999999999875 2 23 366665
Q ss_pred ----------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 162 ----------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 162 ----------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
.|.++ ....+.+|+ +.|++.+.+....+.++++|++++|+||||.+.+ +++|+++|+++|++
T Consensus 105 h~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~~~~~~~~~ 180 (345)
T cd06450 105 HVSVEKAAAYLDVKVRLVPVDEDGRMDP-EALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP---LEEIADLAEKYDLW 180 (345)
T ss_pred hhHHHHHHHHHhcCeEEeeeCCCCCcCH-HHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---HHHHHHHHHHhCCe
Confidence 35554 233458999 9999999875444556888889999999999855 78888899999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcc
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIAL 307 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~ 307 (463)
+++|++|+.+.+. ....... ...+ . +-..+..|++|++ + ++.++|++++ +
T Consensus 181 l~vD~a~~~~~~~-~~~~~~~---~~~~----~--~~d~~~~s~~K~l-~-~p~g~g~~~~---~--------------- 230 (345)
T cd06450 181 LHVDAAYGGFLLP-FPEPRHL---DFGI----E--RVDSISVDPHKYG-L-VPLGCSAVLV---R--------------- 230 (345)
T ss_pred EEEechhhHHHhh-ChhhHHH---hcCc----c--ccCEEEEchhHhh-C-CCcchHHHHH---H---------------
Confidence 9999999886541 1111110 0000 1 1124667999976 3 5677898874 2
Q ss_pred cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCCh--hhH
Q 041151 308 SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPP--KAI 384 (463)
Q Consensus 308 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~--~~~ 384 (463)
...+.++..++. ....++++++..++++++.+.|.+++++.+.. ++.+++.|. +..+. +.
T Consensus 231 ---~~~~~~~l~~l~------------~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~-~~~~~~~~~- 293 (345)
T cd06450 231 ---ALKLWATLRRFG------------RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFR-LKPSVKLDE- 293 (345)
T ss_pred ---HHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE-ECCcchhhH-
Confidence 233333333331 12244566777888999999999988887654 566666552 22100 11
Q ss_pred HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C-CcCcHHHHHHHHHH
Q 041151 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P-AEEDMPAIMESFKK 445 (463)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~-~~e~i~~~~~~l~~ 445 (463)
+...+.+.|.++|+.+.++..+. +..++|+++. . +.+|++++++.|++
T Consensus 294 ----------~~~~i~~~L~~~g~~~~~~~~~~---~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 294 ----------LNYDLSDRLNERGGWHVPATTLG---GPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred ----------HHHHHHHHHHhcCCEEEEeeEEC---CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 22234455677776666655443 3458999998 3 88999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=195.37 Aligned_cols=307 Identities=13% Similarity=0.142 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-------CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-------GE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------~~ 154 (463)
++.+.+++.+++.........| ..+...++++.+.+. ...+.+++++++++|+..+++.... .+
T Consensus 57 ~p~v~~A~~~~~~~~~~~~~~~-----~~~~~~~la~~l~~~----~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~ 127 (406)
T PRK12381 57 HPALREALNEQASKFWHTGNGY-----TNEPVLRLAKKLIDA----TFADRVFFCNSGAEANEAALKLARKYAHDRYGSH 127 (406)
T ss_pred CHHHHHHHHHHHhhcccccCcc-----CCHHHHHHHHHHHhh----CCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCC
Confidence 6789999988887521111112 123334455555433 2246999999999999999997521 13
Q ss_pred CCEEEEc----cCcee--------c-------------CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 155 GDGVVLL----FHTTW--------K-------------RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 155 gd~Vlvp----~g~~~--------~-------------~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
...|+.. +|... + ....-.|+ +.+++.+.+ ++++|++ .|.||+|.++
T Consensus 128 r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~aavii-EPv~~~gg~~ 199 (406)
T PRK12381 128 KSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDL-NSASALIDD------QTCAVIV-EPIQGEGGVI 199 (406)
T ss_pred CCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCH-HHHHHhccC------CeeEEEE-eCCcCCCCCc
Confidence 3556654 22221 0 00112477 899988865 7888776 6999999765
Q ss_pred --CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 210 --SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 210 --s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
+.+.+++|.++|++||+++|+||+|..+.+. +. ..... .+++ ..+ +.||||.+ + +|+|+||++
T Consensus 200 ~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~-G~-~~~~~----~~~v--~pD-----i~t~sK~l-~-gG~~ig~~~ 264 (406)
T PRK12381 200 PADKAFLQGLRELCDRHNALLIFDEVQTGVGRT-GE-LYAYM----HYGV--TPD-----VLTTAKAL-G-GGFPIGAML 264 (406)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCC-cc-hhhhH----hhCC--CCC-----EEEehhhh-h-CCCceEEEE
Confidence 6899999999999999999999999776442 22 11111 1111 111 36999999 6 799999999
Q ss_pred ecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-Cccc-
Q 041151 288 MTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR-NVVC- 364 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p-g~~~- 364 (463)
+++++++.+.... ..+++.+++.+.++.+.|+ .+. ..+++++++++.+++.+.|+++. ...+
T Consensus 265 ---~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~-----------~l~-~~~~~~~~~~~~~~l~~~L~~l~~~~~~~ 329 (406)
T PRK12381 265 ---TTEKCASVMTVGTHGTTYGGNPLASAVAGKVLE-----------LIN-TPEMLNGVKQRHDWFVERLNTINARYGLF 329 (406)
T ss_pred ---EcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH-----------HHh-hccHHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 5888988886644 3467789999999888763 222 23577888899999999888751 1221
Q ss_pred -ccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 365 -NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 365 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
.....|+++++.+. ... ......+...+.++||.+.+. + .+.+|++++ .++++++++++
T Consensus 330 ~~vrg~Gl~~~~~l~--~~~---------~~~~~~~~~~l~~~Gv~v~~~---g----~~~lRl~p~~~~t~~~i~~~~~ 391 (406)
T PRK12381 330 SEIRGLGLLIGCVLN--AEY---------AGKAKQISQEAAKAGVMVLIA---G----PNVVRFAPALNISEEEITTGLD 391 (406)
T ss_pred EEEecCeEEEEEEec--Cch---------hhHHHHHHHHHHHCCcEEeeC---C----CCEEEEeCCccCCHHHHHHHHH
Confidence 12234667674443 210 012334456678899999763 1 237999988 78999999999
Q ss_pred HHHHHHHHHHHH
Q 041151 442 SFKKFNDEFMEQ 453 (463)
Q Consensus 442 ~l~~~l~~~~~~ 453 (463)
+|.++++++.++
T Consensus 392 ~l~~~l~~~~~~ 403 (406)
T PRK12381 392 RFARACERFVSR 403 (406)
T ss_pred HHHHHHHHHHhc
Confidence 999999877554
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-21 Score=190.77 Aligned_cols=305 Identities=12% Similarity=0.079 Sum_probs=196.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC----CCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG----EGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----~gd~ 157 (463)
.+.+++++.+.+.........|+ +..++.+.+.+.+.+..| ++.+++++++|+++++..++.++. + ++++
T Consensus 33 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~g--~~~~~~~~~~ggt~a~~~a~~~~~-~~~~~~~~~ 106 (371)
T PRK13520 33 HPIARKAHEMFLETNLGDPGLFP---GTAKLEEEAVEMLGELLH--LPDAYGYITSGGTEANIQAVRAAR-NLAKAEKPN 106 (371)
T ss_pred hHHHHHHHHHHHhcCCCCcccCc---cHHHHHHHHHHHHHHHhC--CCCCCeEEecCcHHHHHHHHHHHH-hhccCCCce
Confidence 56677888777765222222232 334433444444444444 455688999999999999988775 3 5788
Q ss_pred EEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 158 VVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 158 Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
|+++ .|+++ ...++.+|+ +.|++.+++ +++.|++++++||||.+.+ +++|.++
T Consensus 107 vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~vi~~~~~~~tG~~~~---l~~I~~l 176 (371)
T PRK13520 107 IVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDV-KAVEDLIDD------NTIGIVGIAGTTELGQVDP---IPELSKI 176 (371)
T ss_pred EEecCcchHHHHHHHHHcCceEEEecCCCCCcCCH-HHHHHHHhh------CCEEEEEEcCCcCCcccCC---HHHHHHH
Confidence 9886 45555 334567899 999999987 7888888889999999988 7777888
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++|+++++|++|..+..+.......+ .+ ...+-..+..|.+| + +.++.++|++++ .++++++.+.
T Consensus 177 ~~~~g~~livD~a~~~~~~~~~~~~~~~-~~--------~~~~vd~~~~s~~K-~-~~a~~~~G~~~~--~~~~~~~~l~ 243 (371)
T PRK13520 177 ALENGIFLHVDAAFGGFVIPFLDDPPNF-DF--------SLPGVDSITIDPHK-M-GLAPIPAGGILF--RDESYLDALA 243 (371)
T ss_pred HHHcCCCEEEEecchhHHHHhhcCCCCc-cc--------cCCCCceEEECCcc-c-cCccCCceEEEE--cCHHHHHhhc
Confidence 8899999999999986542100100000 00 11111244467788 4 557889998886 5677777664
Q ss_pred hhhhh---------cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCce
Q 041151 301 KIASI---------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFTEGA 370 (463)
Q Consensus 301 ~~~~~---------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~g~ 370 (463)
..... ..+.+.....++..+++... ....++++++..++++++.+.|+++ |+. +..+..+
T Consensus 244 ~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~---------~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 313 (371)
T PRK13520 244 VDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLG---------REGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLN 313 (371)
T ss_pred ccCccccCCCCcceEeeccChHHHHHHHHHhhhc---------HhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCce
Confidence 22111 11123344455555543100 1123456778888899999999988 887 5555555
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
++.+ .++. ..+ +...|.++||.+.++.. ..++|+|+. ++++|++++++.|+++++
T Consensus 314 ~v~~---~~~~-------------~~~-v~~~L~~~gi~v~~~~~------~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 314 IVAF---DDPN-------------PDE-VREKLRERGWRVSVTRC------PEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred EEEE---ecCC-------------HHH-HHHHHHHCCceeccCCC------CCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 4432 3221 233 34556677999987431 237999988 788999999999988764
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=192.65 Aligned_cols=210 Identities=12% Similarity=0.102 Sum_probs=153.7
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC-------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH------------- 163 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g------------- 163 (463)
+..|+.+. ...|++++|++.+ .+++++|+|++++|..++.+++ ++||+|+++ ++
T Consensus 45 Y~R~~~p~-~~~le~~lA~l~g--------~~~v~~~~gg~~Ai~~~l~all-~~GD~Vl~~~p~y~~~~~~~~~~~~~~ 114 (382)
T TIGR02080 45 YSRSGNPT-RDLLQQALAELEG--------GAGAVVTNTGMSAIHLVTTALL-GPDDLLVAPHDCYGGTYRLLNALAKKG 114 (382)
T ss_pred ccCCCCch-HHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhc
Confidence 45665543 5788999998874 4689999999999999999998 899999986 22
Q ss_pred -ceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCC
Q 041151 164 -TTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 164 -~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~ 242 (463)
.++... ...|. +.+++++++ ++|+|++++|+||||.+++ +++|+++|++++++||+|++|..+.+ .
T Consensus 115 ~~~v~~~-d~~d~-~~l~~ai~~------~tklV~l~~p~NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~-~- 181 (382)
T TIGR02080 115 CFRVLFV-DQGDE-QALRAALAQ------KPKLVLIETPSNPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPAL-Q- 181 (382)
T ss_pred CeEEEEE-CCCCH-HHHHHhcCc------CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCccccc-C-
Confidence 222111 12477 999999887 7999999999999999988 56777788899999999999986533 1
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhc
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMV 321 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 321 (463)
. ++ .+ .. .|+++|+||++.|.++++.|++++ .++++++++...+. .+...+++....+..-+
T Consensus 182 ~---pl-~~--------ga---Divv~S~sK~l~G~~~~~~G~i~~--~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l 244 (382)
T TIGR02080 182 N---PL-AL--------GA---DLVLHSCTKYLNGHSDVIAGAVIA--KDPQVAEELAWWANNLGVTGGAFDSYLTLRGL 244 (382)
T ss_pred C---ch-hh--------CC---CEEEeecceeccCCCCceeEEEEe--CCHHHHHHHHHHHHccCCCCCHHHHHHHHccc
Confidence 1 11 11 21 378899999986678999999875 57888888877665 35556666655554333
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
+ .+..+.++..++...+.+.|++.|.+.
T Consensus 245 ~--------------tl~~R~~~~~~na~~~a~~L~~~p~v~ 272 (382)
T TIGR02080 245 R--------------TLVARMRLQQRNAQAIVEYLQTQPLVK 272 (382)
T ss_pred c--------------hHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 2 222334556678888888888776543
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-21 Score=190.13 Aligned_cols=210 Identities=14% Similarity=0.105 Sum_probs=158.8
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCc------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHT------------ 164 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~------------ 164 (463)
+..|+.+. ...|++++|++++ .+++++++|+++++..++.+++ +|||+|+++ ++.
T Consensus 46 Y~R~~~pt-~~~L~~~lA~l~g--------~~~~i~~~sg~~Ai~~~l~~l~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~ 115 (386)
T PRK08045 46 YSRRGNPT-RDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRG 115 (386)
T ss_pred eeCCCCcc-HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhC
Confidence 45666553 5789999999874 2469999999999999999998 899999997 321
Q ss_pred --eecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCC
Q 041151 165 --TWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 165 --~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~ 242 (463)
++... ...|. +.+++++++ ++++|++++|+||||.+++ +++|.++|++++++||+|++|.....
T Consensus 116 gi~v~~v-d~~d~-e~l~~~l~~------~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~--- 181 (386)
T PRK08045 116 CYRVLFV-DQGDE-QALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPAL--- 181 (386)
T ss_pred CeEEEEe-CCCCH-HHHHHhccc------CCeEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc---
Confidence 22100 13578 999998876 7999999999999999998 56677778899999999999986433
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhc
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMV 321 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 321 (463)
..++ .. .. .++++|+||++.|.++++.|++++ .++++++++..... .+.+.+++.+..+...|
T Consensus 182 --~~pl-~~--------ga---Divv~S~tK~l~G~~d~~~G~vi~--~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl 245 (386)
T PRK08045 182 --QNPL-AL--------GA---DLVLHSCTKYLNGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 245 (386)
T ss_pred --CCch-hh--------CC---CEEEeecceeccCCCCceeEEEEe--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence 1112 11 22 278999999996678889999985 56788888876654 56667888888777776
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
+. +..+.++..+++..+.+.|++.|.+.
T Consensus 246 ~t--------------l~~R~~~~~~na~~la~~L~~~p~v~ 273 (386)
T PRK08045 246 RT--------------LVPRMELAQRNAQAIVKYLQTQPLVK 273 (386)
T ss_pred cc--------------HHHHHHHHHHHHHHHHHHHHcCCCEe
Confidence 42 33456677888889999998877653
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-21 Score=191.55 Aligned_cols=292 Identities=14% Similarity=0.130 Sum_probs=192.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC-----
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD----- 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd----- 156 (463)
|+++++++.++..+ |. +..++++++++++.+.+| .+++++|+|+++++..++.+++ ++||
T Consensus 26 ~~~v~~a~~~~~~~-------~~---~~~~~~~~~~~~~a~~~g----~~~~~~~~g~t~al~~al~al~-~~Gd~~~~~ 90 (363)
T TIGR01437 26 SDEVADAQKRGAQN-------YF---EIKELVNKTGEYIANLLG----VEDAVIVSSASAGIAQSVAAVI-TRGNRYLVE 90 (363)
T ss_pred CHHHHHHHHHHHhc-------CC---CHHHHHHHHHHHHHHhhC----CCeEEEEcCHHHHHHHHHHHHh-cCCCcchhh
Confidence 89999999888653 22 346788888888877755 3578999999999999999998 8998
Q ss_pred ----------EEEEc------c-----------Ccee--cCCCcccChHHHHHHHHHHHHhcCCceeEEE-EECCCCCCc
Q 041151 157 ----------GVVLL------F-----------HTTW--KRQQIGVLIINDLQQSVAQARSKGITVRAMV-IINPGNPTG 206 (463)
Q Consensus 157 ----------~Vlvp------~-----------g~~~--~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~-l~~p~NPtG 206 (463)
+|++| + |+++ ....+.+|+ +.+++++++ ++++|+ +++|+||+|
T Consensus 91 ~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~-~~le~ai~~------~t~ai~~v~~~~~~~g 163 (363)
T TIGR01437 91 NLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYANECSA-EQLEAAITE------KTAAILYIKSHHCVQK 163 (363)
T ss_pred cccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCCCCCH-HHHHHhcCh------hceEEEEEecCCCCcC
Confidence 78887 2 3333 223567999 999999987 789876 568999999
Q ss_pred cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 207 ~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
.+.+ +++|+++|+++|+++|+|++|+. + ..++.. + + -.+++.|+||++ +|+++|++
T Consensus 164 ~~~~---~~~i~~~a~~~gi~vivD~a~~~----~---~~~~~~----~----g---~D~~~~S~~K~l---~gp~~G~l 219 (363)
T TIGR01437 164 SMLS---VEDAAQVAQEHNLPLIVDAAAEE----D---LQKYYR----L----G---ADLVIYSGAKAI---EGPTSGLV 219 (363)
T ss_pred CcCC---HHHHHHHHHHcCCeEEEECCCCC----c---hHHHHH----c----C---CCEEEEeCCccc---CCCceEEE
Confidence 9988 56678899999999999999972 1 011111 1 1 237789999987 58889998
Q ss_pred EecCCChhHHHHHHhhhhh---cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 287 EMTNIPPKTVDEIYKIASI---ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
+ +++++++.+...... ...........+.++++ .+.+...+..+.+.++++.+.+.|.++||+.
T Consensus 220 ~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~----------~~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~ 286 (363)
T TIGR01437 220 L---GKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALE----------QYLSTGKESGAEMVAKLTPFIEALNTLKGVS 286 (363)
T ss_pred E---EcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHH----------HHHccCcccHHHHHHHHHHHHHHHhcCCCeE
Confidence 8 577788776543221 11111112222222221 1222222334455667778999999999988
Q ss_pred cccCC--cee---EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC--eEeeCCCCCCCCCCCcEEEEEec-CCcCc
Q 041151 364 CNFTE--GAM---YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG--ISTVPGSGFGQKEGIFHLRTTIL-PAEED 435 (463)
Q Consensus 364 ~~~~~--g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g--I~v~pg~~f~~~~~~~~lRis~~-~~~e~ 435 (463)
+..+. .+. ..-+.+.... .+. +..+ +.+.|++.| |.+++ .|. .++.+|+++. .+++|
T Consensus 287 ~~~~~~~~~~~~~~~~v~~~~~~--------~g~-~~~~-l~~~L~~~~~~I~~r~--~~~---~~~~~~l~~~~~~~~e 351 (363)
T TIGR01437 287 ASIVQDEAGRDIARAEIRFDESE--------LGM-TAAD-VVQALRQGEPAIYTRG--YKA---NEGIIEIDPRSVTGGQ 351 (363)
T ss_pred EEEecCCCCCcCceEEEEEeccC--------CCC-CHHH-HHHHHhcCCCCEEEee--eee---cCCeEEEEeecCCHHH
Confidence 76321 111 1111122100 011 2334 455677667 66655 232 2347999999 77899
Q ss_pred HHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFN 447 (463)
Q Consensus 436 i~~~~~~l~~~l 447 (463)
++.++++|++++
T Consensus 352 ~~~~~~~l~~~~ 363 (363)
T TIGR01437 352 LDIIVERIREIV 363 (363)
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=193.64 Aligned_cols=289 Identities=12% Similarity=0.126 Sum_probs=191.7
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee------cCC-
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW------KRQ- 169 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~------~~~- 169 (463)
+..|+.+ ...+|++++|++.+ .+++++++|+++|+.+++. ++ ++||+|+++ +|+.+ ...
T Consensus 48 Y~R~~~p-~~~~le~~lA~leg--------~~~~v~~~sG~aAi~~~l~-~l-~~GD~VI~~~~~yg~~~~~~~~~~~~~ 116 (364)
T PRK07269 48 YTRTKNP-TRAKLEETLAAIES--------ADYALATSSGMSAIVLAFS-VF-PVGSKVVAVRDLYGGSFRWFNQQEKEG 116 (364)
T ss_pred eeCCCCc-cHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHH-Hh-CCCCEEEEecCCcCchHHHHHHHHhcC
Confidence 4455544 46899999999973 6799999999999999995 55 899999998 77665 111
Q ss_pred ----CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCc
Q 041151 170 ----QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPF 245 (463)
Q Consensus 170 ----~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~ 245 (463)
.+..|. +.+++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|....+ . .
T Consensus 117 ~~~~~~~~d~-~~l~~~i~~------~TklV~lesP~NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~-~-~-- 182 (364)
T PRK07269 117 RFHFTYANTE-EELIAAIEE------DTDIVYIETPTNPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIY-Q-R-- 182 (364)
T ss_pred cEEEEecCCH-HHHHHhcCc------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-C-C--
Confidence 356788 999999987 8999999999999998875 88888889999999999999865332 1 1
Q ss_pred cchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCC
Q 041151 246 VSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPL 324 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~ 324 (463)
++ .. . -.|++.|+||.+.|..+.-.||+++ .++++.++++..+. .+...+++....+...|+
T Consensus 183 -pl-~~--------g---aDivv~S~tK~l~g~~d~~gG~v~~--~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~-- 245 (364)
T PRK07269 183 -PI-EL--------G---ADIVLHSATKYLSGHNDVLAGVVVT--NDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLK-- 245 (364)
T ss_pred -ch-hh--------C---CcEEEecCceeccCCCcccceEEEe--CcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC--
Confidence 11 11 1 1389999999994333345788775 46778888876554 344455555555555543
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHH
Q 041151 325 KPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402 (463)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (463)
.+..+.++..++...+.+.|++.|++. +. ++.||++.+.- . .... ...+....+...++..+
T Consensus 246 ------------tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~-~-~~~~--~~~f~~~l~~~~~~~sl 309 (364)
T PRK07269 246 ------------TLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKV-A-DETR--IPHILNSLKVFTFAESL 309 (364)
T ss_pred ------------cHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEE-C-CHHH--HHHHHHhCCcceEccCC
Confidence 233455666888888999999888753 33 67788777632 2 1110 00000000111122233
Q ss_pred HHhcCeEeeCCCCCCC--C--------CCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 403 LEATGISTVPGSGFGQ--K--------EGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 403 l~~~gI~v~pg~~f~~--~--------~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.....+.+.|++.+.. + -..+.+|||++. |+.+.+++.|.++++
T Consensus 310 G~~~sl~~~p~~~~~~~~~~~~r~~~Gi~~~liRlsvGl--E~~~dli~dl~~al~ 363 (364)
T PRK07269 310 GGVESLITYPTTQTHADIPAEVRHSYGLTDDLLRLSIGI--EDARDLIADLKQALE 363 (364)
T ss_pred CCcCeEeeCCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHhc
Confidence 3334555666544321 0 014589999996 467788888877764
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=193.16 Aligned_cols=202 Identities=12% Similarity=0.128 Sum_probs=144.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-
Q 041151 105 DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW- 166 (463)
Q Consensus 105 ~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~- 166 (463)
+..+..+|++++|++++ .+++++++|+++++..++.+++ ++||+|+++ .|+++
T Consensus 62 ~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~al~~ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~ 132 (400)
T PRK06234 62 GNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSSLWSAL-KAGDHVVASDTLYGCTFALLNHGLTRYGVEVT 132 (400)
T ss_pred CCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHhhCCeEEE
Confidence 44568999999999985 2467888888999999999998 899999997 23333
Q ss_pred cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC--CeEEEecccccccccCCCCC
Q 041151 167 KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE--NLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 ~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~--~~~vi~Deay~~~~~~~~~~ 244 (463)
.-+ ..|+ +++++++++ ++++|++++|+||||.+.+ +++|.++|+++ +++||+|++|+...+. .
T Consensus 133 ~vd--~~d~-e~l~~~i~~------~tklI~iesP~NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~--~- 197 (400)
T PRK06234 133 FVD--TSNL-EEVRNALKA------NTKVVYLETPANPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ--R- 197 (400)
T ss_pred EEC--CCCH-HHHHHHhcc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC--C-
Confidence 111 1277 999999987 8999999999999999988 66677778786 9999999999876441 1
Q ss_pred ccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhh--h-hcccCChHHHHHHHHh
Q 041151 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIA--S-IALSPNVPAQIFMGLM 320 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~q~~~~~~ 320 (463)
++ .. +..|++.|+||++ +.+|+|+ ||++ +++++++.++... . .+...+++....+...
T Consensus 198 --~l-~~-----------g~Divv~S~sK~l-~g~g~~~gG~v~---~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~ 259 (400)
T PRK06234 198 --PL-QL-----------GADVVVHSATKYL-NGHGDVIAGFVV---GKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRG 259 (400)
T ss_pred --ch-hh-----------CCcEEEeeccccc-cCCCCceeEEEE---ecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 11 11 1348999999999 7789875 9988 5888888886542 2 2333444444444333
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
|+ .+..+.++..++...+.+.|++.|.+
T Consensus 260 l~--------------tl~~r~~~~~~na~~~a~~L~~~~~V 287 (400)
T PRK06234 260 MK--------------TLQIRMEKHCKNAMKVAKFLESHPAV 287 (400)
T ss_pred cC--------------cHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 32 12223444556777788888776543
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=191.05 Aligned_cols=308 Identities=16% Similarity=0.150 Sum_probs=178.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC-----CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS-----DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~-----~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~ 153 (463)
++++++++.+++.... ....++ ......++++.+++++. . +.++++ +++++...++..+.. .
T Consensus 62 ~p~v~~A~~~~l~~~g-~~~~~~~~~~~~~~~~~~l~~~la~~~~------~--~~~~~~-sG~~a~~~ai~~~~~~~~~ 131 (402)
T PRK07505 62 HPAIIEGAVDALKRTG-SLHLSSSRTRVRSQILKDLEEALSELFG------A--SVLTFT-SCSAAHLGILPLLASGHLT 131 (402)
T ss_pred CHHHHHHHHHHHHHhC-CCCCCccchhhhhHHHHHHHHHHHHHhC------C--CEEEEC-ChHHHHHHHHHHHHhcccC
Confidence 7899999998887632 011111 11123455555555542 2 444455 456788877765431 1
Q ss_pred CCC--EEEEc---cCc------------eecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 154 EGD--GVVLL---FHT------------TWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 154 ~gd--~Vlvp---~g~------------~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
+|+ .|... +|. .+ ..-.-.|+ +.+++.+++ +++++++++|+||||.+++ +++
T Consensus 132 ~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v-~~~~~~d~-~~l~~~~~~------~~~~~vl~~p~~~~G~~~~---~~~ 200 (402)
T PRK07505 132 GGVPPHMVFDKNAHASLNILKGICADETEV-ETIDHNDL-DALEDICKT------NKTVAYVADGVYSMGGIAP---VKE 200 (402)
T ss_pred CCCCCEEEEchhhhHhHHhhhhhhhcCCeE-EEeCCCCH-HHHHHHHhc------CCCEEEEEecccccCCcCC---HHH
Confidence 233 33333 111 11 00011478 999998876 6789999999999999999 567
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
|.++|+++++++|+||+|+...++........ +.++. ...+++|+++|+||++ +.+| ||+++ ++++++
T Consensus 201 i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~----~~~~~--~~~d~~i~~~s~sK~~-~~~G---g~~~~--~~~~~~ 268 (402)
T PRK07505 201 LLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVR----SELDY--RLNERTIIAASLGKAF-GASG---GVIML--GDAEQI 268 (402)
T ss_pred HHHHHHHcCCEEEEECcccccCcCCCCCchHH----HHcCC--CCCCCeEEEEechhhh-hccC---eEEEe--CCHHHH
Confidence 77788899999999999976555221111111 12210 0234689999999999 7665 88764 578888
Q ss_pred HHHHhhhh-hccc--CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEE
Q 041151 297 DEIYKIAS-IALS--PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYS 373 (463)
Q Consensus 297 ~~l~~~~~-~~~~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~ 373 (463)
+.+.+... .+++ ++.++..++.+.++-. ...+..++++.++++.+.+...+.. ...+.+++
T Consensus 269 ~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~g~~~~ 332 (402)
T PRK07505 269 ELILRYAGPLAFSQSLNVAALGAILASAEIH---------LSEELDQLQQKLQNNIALFDSLIPT-------EQSGSFLP 332 (402)
T ss_pred HHHHHhCCCceeCCCCCHHHHHHHHHHHHHH---------hccCcHHHHHHHHHHHHHHHHHHHh-------cCCCCCCC
Confidence 88877654 3332 3345666655554200 0011122334444444433332211 12333332
Q ss_pred eeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 374 FPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
+..+..+... +...+ .+.|.++||.+.++..+..+.+..++||++. .+++|+++++++|++++++
T Consensus 333 i~~~~~~~~~----------~~~~~-~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 333 IRLIYIGDED----------TAIKA-AKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred EEEEEeCCHH----------HHHHH-HHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 2112222110 12334 4445678999999754433334468999999 7999999999999988764
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-21 Score=196.13 Aligned_cols=314 Identities=15% Similarity=0.104 Sum_probs=201.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++.+. ...+.+..+..+|+++|++++. ..++|++++|+++++..+++.... ...++|+.
T Consensus 66 ~p~v~~ai~~q~~~~---~~~~~~~~~~~~lae~l~~~~~-------~~~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~ 135 (423)
T TIGR00713 66 HPRVVEAVKEALERG---TSYGAPTEAEILLAKEIISRVP-------SVEMVRFVNSGTEATMSAVRLARGYTGRDKIIK 135 (423)
T ss_pred CHHHHHHHHHHHHhC---CcCCCCCHHHHHHHHHHHHhCC-------cccEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 789999999888762 2222245567889999998863 236899999999999999986421 24467776
Q ss_pred c----cCce-----------e-------cC--C-----Ccc---cChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCcc
Q 041151 161 L----FHTT-----------W-------KR--Q-----QIG---VLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQ 207 (463)
Q Consensus 161 p----~g~~-----------~-------~~--~-----~~~---~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~ 207 (463)
. +|.. . +. . ... .|+ +.|++.++.. ..++++|++. .|+| +|.
T Consensus 136 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~---~~~~aavi~ep~~~~-~G~ 210 (423)
T TIGR00713 136 FEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDL-EALEEVFEEY---GEEIAGVIVEPVAGN-MGV 210 (423)
T ss_pred EcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCH-HHHHHHHHHc---CCcEEEEEEeCCCCC-CCC
Confidence 4 2211 0 00 0 000 167 9999988742 1268899887 8899 798
Q ss_pred CCC-HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 208 CLS-EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 208 ~~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+.+ .+.+++|.++|++||+++|+||+|..+.++ . .. ... .+++ ..+ +.||||.+ + +|+|+||+
T Consensus 211 ~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g-~-~~--~~~---~~~~--~pD-----i~t~sK~l-~-~G~pig~v 274 (423)
T TIGR00713 211 VPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVA-L-GG--AQE---YFGV--EPD-----LTTLGKII-G-GGLPVGAF 274 (423)
T ss_pred cCCCHHHHHHHHHHHHHhCCEEEEEccccccccC-c-ch--hHH---HhCC--Ccc-----hhhhhhhh-c-CCCceeee
Confidence 887 588999999999999999999999887542 1 11 111 1211 121 24799999 6 89999999
Q ss_pred EecCCChhHHHHHHhh---hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 287 EMTNIPPKTVDEIYKI---AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~---~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
+ +++++++.+... .. .+++.+++.|.++.+.|+... + ....+..++..++.++.+.+.+++. ++
T Consensus 275 ~---~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~-------~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 342 (423)
T TIGR00713 275 G---GRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLD-------E-EGVYTELDELAKRLAEGLSEVLEDT-GI 342 (423)
T ss_pred e---EHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHh-------c-ccHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 9 588898888632 22 466789999999888874211 0 0023345555666666677767666 44
Q ss_pred cc-ccCCceeEE-eeeccCChhhHHHHhhcCCCChH--HHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHH
Q 041151 363 VC-NFTEGAMYS-FPQIRLPPKAIEAAKRAGKVPDV--FYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPA 438 (463)
Q Consensus 363 ~~-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~ 438 (463)
.. ....|.++. ++..+.....-+ ....++. ..+...|.++||.+.++ .|+ .+|+++..+++++++
T Consensus 343 ~~~v~~~g~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~Gv~v~~~-~~~------~~~l~~~~t~~~i~~ 411 (423)
T TIGR00713 343 PHTVNRVGSMFSLFFTEEEVTNYAD----AKKSDTELFAKFFHEMLDKGVFLPPS-QFE------ACFLSAAHTEEDIEN 411 (423)
T ss_pred CeEEEeeccEEEEEEecCCCCChhh----hhcccHHHHHHHHHHHHHCCeEEecC-Ccc------ceeeECCCCHHHHHH
Confidence 43 234455443 332211100000 0000111 12333455689998753 232 479998888899999
Q ss_pred HHHHHHHHHHH
Q 041151 439 IMESFKKFNDE 449 (463)
Q Consensus 439 ~~~~l~~~l~~ 449 (463)
++++|.+++++
T Consensus 412 ~~~~l~~~l~~ 422 (423)
T TIGR00713 412 TIEAAEEVFAE 422 (423)
T ss_pred HHHHHHHHHhh
Confidence 99999998865
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-21 Score=193.03 Aligned_cols=324 Identities=11% Similarity=0.001 Sum_probs=199.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cCCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RGEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~~gd~Vl 159 (463)
++.+.+++.+++.+. .+.+.+..+.+ ...++++.+.+..+.... +.+++++++++++..+++... .++++.|.
T Consensus 59 ~~~i~~a~~~~~~~~---~~~~~~~~~~~-~~~~la~~l~~~~~~~~~-~~~~f~~sGsea~e~Alklar~~~~r~~iv~ 133 (425)
T PRK08088 59 HPKVVAAVEAQLKKL---SHTCFQVLAYE-PYLELCEKMNQKVPGDFA-KKTLLVTTGSEAVENAVKIARAATKRSGVIA 133 (425)
T ss_pred CHHHHHHHHHHHhhC---CCccccccCCH-HHHHHHHHHHHhCCCCCC-CEEEEeCCcHHHHHHHHHHHHHHhCCCeEEE
Confidence 788889998888763 12222222333 344788888765543332 467777777787777776543 13444444
Q ss_pred Ec---cCcee----------c-CCC-----------------cccC----hHHHHHHHHHHHHhcCCceeEEEEE-CCCC
Q 041151 160 LL---FHTTW----------K-RQQ-----------------IGVL----IINDLQQSVAQARSKGITVRAMVII-NPGN 203 (463)
Q Consensus 160 vp---~g~~~----------~-~~~-----------------~~~d----~~~~l~~~l~~~~~~~~~~~~i~l~-~p~N 203 (463)
+. +|... + ..+ .+.+ + +.|++.+++. ..+.++.+|++. ..+|
T Consensus 134 ~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~l~~~l~~~-~~~~~~aavi~Epi~~~ 211 (425)
T PRK08088 134 FTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAI-ASIERIFKND-AAPEDIAAIIIEPVQGE 211 (425)
T ss_pred ECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHH-HHHHHHHHhc-cCCCceEEEEECcccCC
Confidence 43 22221 0 000 0011 3 5677777521 011257777776 6688
Q ss_pred CCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee
Q 041151 204 PTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG 283 (463)
Q Consensus 204 PtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 283 (463)
+.....+.+.+++|.++|++|++++|+||+|..+.+. + ....+ ..+ +.+..+.||||++ + +|+|+
T Consensus 212 ~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~-g----~~~~~-~~~-------~~~pdi~s~sK~l-~-~G~ri 276 (425)
T PRK08088 212 GGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRT-G----TLFAM-EQM-------GVAADLTTFAKSI-A-GGFPL 276 (425)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-c----chhHH-hhc-------CCCCCEEEEeccc-c-CCCcc
Confidence 8778889999999999999999999999999975442 1 11111 111 1234579999999 6 89999
Q ss_pred EEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 284 GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 284 G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
||++ +++++++.+..... .+++.+++.|.++..+|+.. ..+++ .+++++..++.++.+.+.+...|.+
T Consensus 277 g~v~---~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~-----~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~ 345 (425)
T PRK08088 277 AGVT---GRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVF-----EQENL---LQKANALGEKLKDGLLAIAEKHPEI 345 (425)
T ss_pred eeeE---ecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHH-----HhcCH---HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 9999 58999988866553 57788999999999998532 11122 2333433333344444444445443
Q ss_pred ccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHH
Q 041151 363 VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIM 440 (463)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~ 440 (463)
....+. |+++|+.+.-+.. +..........+...+.++||.+.|+..|+ +.+|++++ .++++|++++
T Consensus 346 ~~v~g~-G~~~~l~l~~~~~-----~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~~-----~~iRl~~~~~~t~~ei~~~i 414 (425)
T PRK08088 346 GDVRGL-GAMIAIELFEDGD-----HSKPNAKLTAQIVARARDKGLILLSCGPYY-----NVLRILVPLTIEDAQIRQGL 414 (425)
T ss_pred EEEecc-ceEEEEEEecCCC-----CCCCCHHHHHHHHHHHHhCCCEEecCCCCC-----CEEEEECCCCcCHHHHHHHH
Confidence 323333 7889976621100 000000012333455667899998865543 37999999 6799999999
Q ss_pred HHHHHHHHH
Q 041151 441 ESFKKFNDE 449 (463)
Q Consensus 441 ~~l~~~l~~ 449 (463)
++|++++.+
T Consensus 415 ~~l~~~l~~ 423 (425)
T PRK08088 415 EIIAQCFDE 423 (425)
T ss_pred HHHHHHHHh
Confidence 999998864
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=193.71 Aligned_cols=306 Identities=12% Similarity=0.081 Sum_probs=191.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--------- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------- 152 (463)
++.+++++.+.+..... .... . ..+..+.+++.+.+..+ .+.+++++++++|+..++.....
T Consensus 49 ~p~v~~a~~~~~~~~~~---~~~~-~-~~~~~~~~~~~l~~~~~----~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~ 119 (400)
T PTZ00125 49 HPKILAALINQAQKLTL---TSRA-F-YNDVLGLAEKYITDLFG----YDKVLPMNSGAEAGETALKFARKWGYEVKGIP 119 (400)
T ss_pred CHHHHHHHHHHHHhccc---cccc-c-cCHHHHHHHHHHHhCCC----CCEEEEeCCcHHHHHHHHHHHHHHHHhccCCC
Confidence 77899999888765311 1111 1 12233444444443222 36889999999999999997631
Q ss_pred CCCCEEEEc----cCcee-----cCC------------C----cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 153 GEGDGVVLL----FHTTW-----KRQ------------Q----IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 153 ~~gd~Vlvp----~g~~~-----~~~------------~----~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
..++.|++- +|... ... + .-.|+ ++|++.++.. ++++|+++.++||||.
T Consensus 120 ~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~-----~~~~v~~ep~~~~~G~ 193 (400)
T PTZ00125 120 ENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDV-EALEKLLQDP-----NVAAFIVEPIQGEAGV 193 (400)
T ss_pred CCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCH-HHHHHHhCCC-----CeEEEEEcCccCCCCC
Confidence 023556654 22221 000 0 01278 9999988621 7999999888999999
Q ss_pred CCC-HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 208 CLS-EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 208 ~~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+++ .+.+++|.++|++||+++|+||+|..+.+. +.. ... .. .++ ..+ + .++||++ +.+++|+||+
T Consensus 194 ~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~-G~~-~~~-~~-~~~----~pd---~--~~~sK~l-~~g~~~ig~v 259 (400)
T PTZ00125 194 IVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRT-GKL-LAH-DH-EGV----KPD---I--VLLGKAL-SGGLYPISAV 259 (400)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc-chh-hHH-Hh-cCC----CCC---E--EEEcccc-cCCCcCcEEE
Confidence 886 455999999999999999999999865442 211 111 11 111 111 2 3478999 6444699999
Q ss_pred EecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC
Q 041151 287 EMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----RN 361 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg 361 (463)
+ +++++++.+..... .+++.+++.|.++.+.|+ .+.+ ....++.+++.+.+.+.|+++ +.
T Consensus 260 ~---~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~-----------~i~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~ 324 (400)
T PTZ00125 260 L---ANDDVMLVIKPGEHGSTYGGNPLACAVAVEALE-----------VLKE-EKLAENAQRLGEVFRDGLKELLKKSPW 324 (400)
T ss_pred E---EcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9 48888888865443 456778888888877653 1111 123344445555555555542 22
Q ss_pred cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
+....+ .|.+.++.+..+... +...++.. |.++||.+.|+. .+++||++. .++++++++
T Consensus 325 ~~~~~~-~g~~~~v~~~~~~~~----------~~~~~~~~-l~~~Gv~v~~~~-------~~~lRi~~~~~~~~~~i~~~ 385 (400)
T PTZ00125 325 VKEIRG-KGLLNAIVFDHSDGV----------NAWDLCLK-LKENGLLAKPTH-------DNIIRFAPPLVITKEQLDQA 385 (400)
T ss_pred eEEEec-ccEEEEEEEccCcch----------HHHHHHHH-HHHCCeEEeecC-------CCEEEEECCccCCHHHHHHH
Confidence 233344 455666444322111 13445544 557899998852 247999975 888999999
Q ss_pred HHHHHHHHHHH
Q 041151 440 MESFKKFNDEF 450 (463)
Q Consensus 440 ~~~l~~~l~~~ 450 (463)
+++|.+++.++
T Consensus 386 l~~l~~~l~~~ 396 (400)
T PTZ00125 386 LEIIKKVLKSF 396 (400)
T ss_pred HHHHHHHHHHH
Confidence 99999988775
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=187.71 Aligned_cols=202 Identities=14% Similarity=0.142 Sum_probs=138.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCceecCC
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTWKRQ 169 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~~~~ 169 (463)
....+|++++|++++ .. ..+++++| ++++..++.+++ +|||+|+++ .|+++.
T Consensus 45 p~~~~L~~~lA~l~g------~~-~~v~~~sG-~~ai~~~l~al~-~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~-- 113 (376)
T PRK06460 45 PTVLELTKKIVELEN------AE-MGVAFSSG-MGAISTTALALL-KPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVD-- 113 (376)
T ss_pred ccHHHHHHHHHHHhC------CC-cEEEeCCH-HHHHHHHHHHHh-CCCCEEEEecCCcCcHHHHHHHHHHhhCcEEE--
Confidence 356899999999985 32 35555555 789999999998 899999996 233330
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
....+..+.+++.+++ ++|+|++++||||||.+++.+ +|+++|+++|++||+|++|+.... ..++
T Consensus 114 ~~~~~~~~~l~~~~~~------~tklV~l~sp~NPtG~v~d~~---~I~~la~~~g~~vivDea~~~~~~-----~~~l- 178 (376)
T PRK06460 114 ASNPGSDNIIEKAKSK------RYDVVFVENITNPLLRVVDIT---ELSKVCKENGSILIVDATFSTPIN-----QKPL- 178 (376)
T ss_pred EECCCCHHHHHHhcCC------CceEEEEECCCCCCCcccCHH---HHHHHHHHcCCEEEEECCcCcccc-----CChh-
Confidence 0112220334443333 799999999999999999955 567788899999999999975311 1111
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
. .+..|+++|+||+++|..+.|+||++ +++++++.+.+.+. .+.+.++. .+..+++
T Consensus 179 ----------~-~~~divv~S~sK~l~G~~~~~~G~~~---~~~~l~~~l~~~~~~~g~~~~~~---~a~~~l~------ 235 (376)
T PRK06460 179 ----------E-LGADIVVHSASKFLAGHNDVIAGLAA---GYGKLLNVIDQMRRTLGTSLDPH---AAYLTLR------ 235 (376)
T ss_pred ----------h-cCCCEEEeecceeccCCCCceEEEEe---cCHHHHHHHHHHHHhcCCCCCHH---HHHHHHh------
Confidence 1 12358999999998444457899998 68999999987765 33333332 2233332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
..++++.+.++..++++.+.+.|++.|.+
T Consensus 236 -----~~~~l~~r~~~~~~n~~~l~~~L~~~p~v 264 (376)
T PRK06460 236 -----GIKTLKIRMDVINRNAEQIAEFLEGHPKV 264 (376)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 12344456777889999999999987654
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-21 Score=190.79 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=183.6
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee----------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW---------- 166 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~---------- 166 (463)
+..|+.+. ..+|++.+|++++ ..+.|++ ++++.++..++.+++ ++||+|+++ ++...
T Consensus 55 y~r~~~pt-~~~Le~~lA~l~G-------~~~al~~-~sG~~Ai~~~l~al~-~~Gd~Vv~~~~~y~~~~~~~~~~~~~~ 124 (386)
T PRK06767 55 YSRLGNPT-VKLFEERMAVLEG-------GEEALAF-GSGMAAISATLIGFL-KAGDHIICSNGLYGCTYGFLEVLEEKF 124 (386)
T ss_pred ccCCCCcc-hHHHHHHHHHHhC-------CCcEEEE-CCHHHHHHHHHHHHh-CCCCEEEEcCCcHHHHHHHHHHHHhhc
Confidence 44555544 5789999999985 2244555 455679999999998 899999997 22221
Q ss_pred ---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCC
Q 041151 167 ---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243 (463)
Q Consensus 167 ---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~ 243 (463)
.......|+ +.+++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+...+ . .
T Consensus 125 gi~~~~~~~~d~-~~l~~~i~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~-~-~ 192 (386)
T PRK06767 125 MITHSFCDMETE-ADIENKIRP------NTKLIFVETPINPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYL-Q-R 192 (386)
T ss_pred CeEEEEeCCCCH-HHHHHhhCc------CceEEEEeCCCCCCceecC---HHHHHHHHHHcCCEEEEECCCccccc-C-C
Confidence 111122477 889988876 7999999999999999988 67777788899999999999975433 1 1
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhh-h-hcccCChHHHHHHHHh
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIA-S-IALSPNVPAQIFMGLM 320 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~q~~~~~~ 320 (463)
++. . . ..+++.|+||.+ +.+|.|+ ||++ ++++.++.+.+.. . .....+++.+.++...
T Consensus 193 ---pl~-----~----g---~Div~~S~sK~l-~g~g~~~gG~v~---~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~ 253 (386)
T PRK06767 193 ---PLE-----L----G---CDAVVHSATKYI-GGHGDVVAGVTI---CKTRALAEKIRPMRKDIGGIMAPFDAWLLLRG 253 (386)
T ss_pred ---chh-----c----C---CcEEEecCccee-cCCCCceeEEEE---eChHHHHHHHHHHHHHhCCCCCHHHHHHHHcC
Confidence 111 1 1 137889999999 7788885 8888 5888777764433 3 2333455544444443
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccC-----------CceeEEeeeccCChhhHHHHh
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFT-----------EGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~-----------~g~~~~~~~~~~~~~~~~~~~ 388 (463)
|+ .+..+.++..++...+.+.|+++|++.. ..| .||++.| ++....
T Consensus 254 L~--------------tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf---~l~~~~----- 311 (386)
T PRK06767 254 LK--------------TLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISF---SIKGGK----- 311 (386)
T ss_pred CC--------------cHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEE---EEcCCH-----
Confidence 32 1223456678899999999999998773 322 3455444 332110
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCC------------C------C--CCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQ------------K------E--GIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~------------~------~--~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.+...+ .+.|+..++.+.-|..... . . ..+.+|||++. |+.+.+++.|.+++.
T Consensus 312 ----~~~~~f-~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl--E~~~dl~~dl~~al~ 384 (386)
T PRK06767 312 ----EETQAF-INDLHFITIAVSLGDTETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL--ESWEDIVSDLEQALK 384 (386)
T ss_pred ----HHHHHH-HHhCCccEEecCCCCcCccccCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHh
Confidence 012333 3446666666665543321 0 0 13589999996 467888888888775
Q ss_pred H
Q 041151 449 E 449 (463)
Q Consensus 449 ~ 449 (463)
+
T Consensus 385 ~ 385 (386)
T PRK06767 385 K 385 (386)
T ss_pred h
Confidence 3
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-20 Score=185.46 Aligned_cols=330 Identities=16% Similarity=0.116 Sum_probs=203.0
Q ss_pred cHHHHHHHHHHhhhcCC----CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSG----GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
.+.+.+++.+++..++. ....|+...++.+|++++|++++ ..+.+++++|.+. ...++.+++ ++||.
T Consensus 14 ~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g-------~e~al~~~sG~~a-~~~~i~~l~-~~GD~ 84 (392)
T PLN03227 14 SPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLG-------TESAILYSDGAST-TSSTVAAFA-KRGDL 84 (392)
T ss_pred CHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhC-------CCcEEEecCcHHH-HHHHHHHhC-CCCCE
Confidence 77899999988876431 23347777778999999999986 2356777777554 447787787 99999
Q ss_pred EEEc--------cCceecC---CCcc-cChHHHHHHHHHHHHh--------cCCceeEEEEECCCCCCccCCCHHHHHHH
Q 041151 158 VVLL--------FHTTWKR---QQIG-VLIINDLQQSVAQARS--------KGITVRAMVIINPGNPTGQCLSEANLREI 217 (463)
Q Consensus 158 Vlvp--------~g~~~~~---~~~~-~d~~~~l~~~l~~~~~--------~~~~~~~i~l~~p~NPtG~~~s~~~l~~l 217 (463)
|+++ .+..... ..+. .|. +.+++.++.... ..+++++|++.+++||+|.+.+ +++|
T Consensus 85 Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~-~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~---l~~i 160 (392)
T PLN03227 85 LVVDRGVNEALLVGVSLSRANVRWFRHNDM-KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAP---LKEL 160 (392)
T ss_pred EEEeccccHHHHHHHHHcCCeEEEeCCCCH-HHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccC---HHHH
Confidence 9998 2211100 0011 134 555554433211 1136788888899999999999 6678
Q ss_pred HHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH
Q 041151 218 LRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 218 ~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
.++|++||+++|+||+|....+ +.... ... ..+|++ ...+..|++.|+||.+ |.+.||++ +++++++
T Consensus 161 ~~l~~~~g~~livDe~~~~g~~-g~~G~-g~~---~~~g~~-p~~~~Div~~slsk~~----g~~gg~v~---~~~~~~~ 227 (392)
T PLN03227 161 VALKEEFHYRLILDESFSFGTL-GKSGR-GSL---EHAGLK-PMVHAEIVTFSLENAF----GSVGGMTV---GSEEVVD 227 (392)
T ss_pred HHHHHHcCCEEEEECccccccc-CCCCC-cHH---HHcCCC-CCCCceEEEeechhhh----hccCcEEe---cCHHHHH
Confidence 8899999999999999984333 21111 222 222221 1123468899999976 35668887 6888888
Q ss_pred HHHhhhh-hcccCC--hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc----------
Q 041151 298 EIYKIAS-IALSPN--VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC---------- 364 (463)
Q Consensus 298 ~l~~~~~-~~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~---------- 364 (463)
.+..... ..++.+ +..+.++...+. ... +.++++++++++.+++.+.|++. ++..
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~aa~~al~----------~~~-~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~ 295 (392)
T PLN03227 228 HQRLSGSGYCFSASAPPFLAKADATATA----------GEL-AGPQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVI 295 (392)
T ss_pred HHHHhCcCccccCCCCHHHHHHHHHHHH----------HHh-cCHHHHHHHHHHHHHHHHHHHhc-CCcccccccccccc
Confidence 7765432 233433 445555554442 111 23456778899999999999753 2221
Q ss_pred ccCCceeEEeeeccCChhhHHHHhhcCCCC--hHHHHHHHHHhcCeEeeCCCC-----CCCCCCCcEEEEEec--CCcCc
Q 041151 365 NFTEGAMYSFPQIRLPPKAIEAAKRAGKVP--DVFYCLRLLEATGISTVPGSG-----FGQKEGIFHLRTTIL--PAEED 435 (463)
Q Consensus 365 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gI~v~pg~~-----f~~~~~~~~lRis~~--~~~e~ 435 (463)
.....+.++.+.+.-... . . ...+ ....+.+.+.++||.+.+... +... ....+|+++. ++++|
T Consensus 296 ~~~~~~~i~~i~~~~~~~--~---~-~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~-P~~~iR~~~~~~~t~ee 368 (392)
T PLN03227 296 TSDPISPIIYLRLSDQEA--T---R-RTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLV-PPPCLRVVANASHTRED 368 (392)
T ss_pred CCCCCCCEEEEEeCCHHH--h---h-hhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCC-CCceEEEEecCCCCHHH
Confidence 111123333333321100 0 0 0000 012334556778999975221 1111 1247999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 041151 436 MPAIMESFKKFNDEFMEQYED 456 (463)
Q Consensus 436 i~~~~~~l~~~l~~~~~~~~~ 456 (463)
+++++++|+++++++.-+|-|
T Consensus 369 i~~~~~~l~~~~~~~~~~~~~ 389 (392)
T PLN03227 369 IDKLLTVLGEAVEAILCKIID 389 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999988655544
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=191.22 Aligned_cols=306 Identities=15% Similarity=0.115 Sum_probs=201.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC------CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---c
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS------DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---R 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~------~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~ 152 (463)
|+.+++++.+.+.....+..... .......+|+.++++++ +++++|++|+|+++++..++.++. .
T Consensus 16 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~v~~~~g~t~a~~~~l~~l~~~~~ 89 (402)
T TIGR02006 16 DPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIG------ADSREIVFTSGATESNNLAIKGIAHFYK 89 (402)
T ss_pred CHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCCHHHHHHHHHHHHHHhhc
Confidence 88899998877654211111111 11234567788888875 678899999999999999887763 1
Q ss_pred CCCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 153 GEGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 153 ~~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
++|++|+++ .|.++ ...++.+|+ +.+++.+++ ++++|++++++||||.+.+
T Consensus 90 ~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~-~~l~~~l~~------~~~lv~v~~~~n~tG~~~~-- 160 (402)
T TIGR02006 90 SKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDL-EELKAAIRD------DTILVSIMHVNNEIGVIQD-- 160 (402)
T ss_pred CCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCH-HHHHHhcCC------CCEEEEEECCCcCceeccc--
Confidence 589999986 25555 344566899 999999876 7899999999999999987
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+++|.++|+++|+++++|++++.... +..+. +.+-.+++.|.+|.+ |++| +|++++ +
T Consensus 161 -~~~I~~l~~~~g~~livD~a~a~g~~-----~~~~~-----------~~~~D~~~~s~~K~~-gp~G--~G~l~~---~ 217 (402)
T TIGR02006 161 -IAAIGEICRERKVFFHVDAAQSVGKI-----PINVN-----------ELKVDLMSISGHKIY-GPKG--IGALYV---R 217 (402)
T ss_pred -HHHHHHHHHHcCCEEEEEcchhcCCc-----ccCcc-----------ccCCCEEEEehhhhc-CCCc--eEEEEE---c
Confidence 67788888999999999999975322 11221 112347889999977 7667 888886 3
Q ss_pred hhHHHHHHhhh-------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 041151 293 PKTVDEIYKIA-------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 293 ~~~~~~l~~~~-------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~ 364 (463)
++....+.... . ...+.+.....++..+++ ......+...+++++.++.+.+.|++++++.+
T Consensus 218 ~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~----------~~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~ 287 (402)
T TIGR02006 218 RKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFR----------IAKEEMAQDTAHVLALRDRLLNGIKSIEEVYL 287 (402)
T ss_pred cCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 32222221111 1 112334444444445542 12234566778889999999999998888766
Q ss_pred ccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CCcEE
Q 041151 365 NFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GIFHL 425 (463)
Q Consensus 365 ~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~~~l 425 (463)
..+.. ...+.+.+... +.... ...+ .+|.++.|..|.... ..+++
T Consensus 288 ~~~~~~~~p~~~~v~f~~~-------------~~~~~-~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~v 351 (402)
T TIGR02006 288 NGDLEHRVPGNLNVSFNYV-------------EGESL-IMAL--KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSI 351 (402)
T ss_pred eCCccccCCCeEEEEEeCc-------------CHHHH-HHhc--CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceE
Confidence 53211 00011112210 12222 2223 589988887764310 13689
Q ss_pred EEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 426 RTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 426 Ris~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|+|++ ++++|++++++.|+++++.++
T Consensus 352 R~S~~~~~t~edid~l~~~l~~~~~~~~ 379 (402)
T TIGR02006 352 RFTIGRFTTEEEIDYAVKLVKSAIDKLR 379 (402)
T ss_pred EEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999 899999999999999988764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=185.04 Aligned_cols=210 Identities=11% Similarity=0.144 Sum_probs=152.4
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------cCC
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------KRQ 169 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------~~~ 169 (463)
+..|+.+ ....|++++|++.+ .++|++|+|+++++..++.+++ ++||+|+++ ++... ...
T Consensus 47 Y~R~~np-t~~~Le~~lA~leg--------~e~ivvt~gg~~Ai~~~l~all-~~Gd~Il~~~~~y~~~~~~~~~~~~~~ 116 (388)
T PRK08861 47 YTRSGNP-NRGLLEQTLSELES--------GKGAVVTNCGTSALNLWVSALL-GPDDLIVAPHDCYGGTYRLFNTRANKG 116 (388)
T ss_pred ccCCCCc-hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCchHHHHHHHHHHHhcC
Confidence 4555554 36789999999974 5899999999999999999998 899999997 33221 111
Q ss_pred Cc------ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCC
Q 041151 170 QI------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243 (463)
Q Consensus 170 ~~------~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~ 243 (463)
++ ..|+ +.+++++++ ++++|++++|+||||.+++ +++|.++|+++++++|+|++|....+. .
T Consensus 117 gi~v~~vd~~d~-e~l~~~i~~------~tklV~lesP~NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~--~ 184 (388)
T PRK08861 117 DFKVQFVDQSDA-AALDAALAK------KPKLILLETPSNPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ--K 184 (388)
T ss_pred CeEEEEECCCCH-HHHHHhcCc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC--C
Confidence 11 2477 999988876 8999999999999999999 556777888999999999999875441 1
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcC
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVN 322 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~ 322 (463)
+ .. + +. .+++.|++|+++|..++..|+++. .++++.++++..+. .+...+++....+..-|+
T Consensus 185 p-l~-------~----Ga---Divv~S~tK~l~G~~d~~gG~i~~--~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~ 247 (388)
T PRK08861 185 P-LE-------L----GA---DFVIHSTTKYINGHSDVIGGVLIT--KTKEHAEELAWWGNCIGATGTPFDSYMTLRGIR 247 (388)
T ss_pred C-cc-------c----CC---CEEEeecceeccCCCcceeEEEEe--cHHHHHHHHHHHHhccCCCCChHHHHHHHhcCC
Confidence 1 11 1 22 389999999996556788999984 35677777776655 345555665555544443
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 323 PLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
. +.-+.++..++...+.+.|+..|.+
T Consensus 248 T--------------l~lR~~~~~~~a~~~a~~L~~~p~v 273 (388)
T PRK08861 248 T--------------LGARMRVHEESAQQILAYLQTQSLV 273 (388)
T ss_pred C--------------HHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 2 2234455677788888888887654
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=193.64 Aligned_cols=277 Identities=16% Similarity=0.144 Sum_probs=181.8
Q ss_pred HHHHHHHHH---HHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee---
Q 041151 110 PGVRKEVAE---FIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW--- 166 (463)
Q Consensus 110 ~~lr~~ia~---~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~--- 166 (463)
+.+++++++ ++.+.+|. +.+++++|+|+++++..++.++...+|++|+++ .|.++
T Consensus 108 ~g~~~~~~e~~~~la~l~g~--~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v 185 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTGM--DVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEV 185 (447)
T ss_pred hHHHHHHHHHHHHHHHHhCC--CcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEe
Confidence 446666664 34666664 456899999999999999888732689999997 25555
Q ss_pred c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe--cccccccccCCCC
Q 041151 167 K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG--DEVYQQNIYQDER 243 (463)
Q Consensus 167 ~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~--Deay~~~~~~~~~ 243 (463)
+ ..+ .+|+ +.|++++++ ++++|++++| ||||.+.+ +++|.++|+++|+++++ |.+... .+
T Consensus 186 ~~~~~-~~d~-~~l~~~i~~------~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g-~~---- 248 (447)
T PRK00451 186 PYEDG-VTDL-EALEAAVDD------DTAAVVVQYP-NFFGVIED---LEEIAEIAHAGGALFIVGVDPVSLG-LL---- 248 (447)
T ss_pred cCCCC-CCCH-HHHHHhcCC------CeEEEEEECC-CCCCeeCC---HHHHHHHHHHCCCEEEEEcChHHhc-cC----
Confidence 2 234 7899 999999976 8999999999 89999966 78888899999999988 433211 11
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEe---cCCcccCCCCCceeEEEEecCCChhHHHHHH--------------------
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFH---TVSKGYWGECGQRGGYFEMTNIPPKTVDEIY-------------------- 300 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~---S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~-------------------- 300 (463)
. .. .+.+..+++. +|||.+ +++|+++||+++ ++++++.+.
T Consensus 249 ~--~~-----------~~~~~D~~~~s~~k~~~~~-~~~Gpg~G~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 311 (447)
T PRK00451 249 K--PP-----------GEYGADIVVGEGQPLGIPL-SFGGPYLGFFAT---RKKLVRQMPGRLVGETVDADGKRGFVLTL 311 (447)
T ss_pred C--Cc-----------ccCCCCEEEECCCcCCCCC-CCCCCCchHHHh---hHHHHhhCCCCEeeeecccCCCeeeEeec
Confidence 0 00 1111234544 678877 778999999984 777777631
Q ss_pred --------hhhh-hcccCChHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCce
Q 041151 301 --------KIAS-IALSPNVPAQ-IFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGA 370 (463)
Q Consensus 301 --------~~~~-~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~ 370 (463)
+... ...+.+...| .++...++. ......+++++++.++++++.+.|++++|+.+. ++.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~---------~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~ 380 (447)
T PRK00451 312 QAREQHIRREKATSNICTNQALNALAAAIYMSL---------LGPEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGP 380 (447)
T ss_pred cccccccccccccccccccHHHHHHHHHHHHHH---------HCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCC
Confidence 1111 1122222233 222222210 001235667889999999999999998788775 455
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEe-eCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIST-VPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v-~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
+|.++.++++. +..+++.. |.++||.+ .+++.|+.. ...++|+|+. .++++++++++.|++++
T Consensus 381 ~~~~~~v~~~~------------~~~~~~~~-L~~~gi~~~~~~~~~~~~-~~~~~rvs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 381 FFNEFVVRLPK------------PAEEVNEA-LLEKGILGGYDLGRYYPE-LGNHLLVCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred eEEEEEEecCC------------CHHHHHHH-HHhcCCCCCcccccccCC-cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 55543233321 24455555 45567653 455656532 2358999997 78899999999998764
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-20 Score=187.59 Aligned_cols=200 Identities=13% Similarity=0.124 Sum_probs=142.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~ 170 (463)
...|++.++++++ .+++++++|+++++..++.+++ ++||+|+++ .|+++ ..+.
T Consensus 63 ~~~le~~la~l~g--------~~~~v~~ssG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 63 VTMFQERLAALEG--------AEACVATASGMAAILAVVMALL-QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 5678888888864 4578899999999999999998 899999996 23333 1111
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
-|. +.+++++++ ++|+|++++|+||||.+.+ +++|+++|+++|++||+|++|....+. . ++ .
T Consensus 134 --~d~-~~l~~~i~~------~tklV~ie~p~NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~--~---pl-~ 195 (390)
T PRK08133 134 --TDL-DAWRAAVRP------NTKLFFLETPSNPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQ--Q---PL-K 195 (390)
T ss_pred --CCH-HHHHHhcCc------CCeEEEEECCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccC--C---ch-h
Confidence 267 899998876 8999999999999999987 678888899999999999999764331 1 11 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
. . ..+++.|+||++ +.+|.++|++++ +++++++.+..... .....+...+..+..-+
T Consensus 196 ~--------g---~Divv~S~sK~~-~g~g~~~GG~vv--~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl-------- 253 (390)
T PRK08133 196 L--------G---ADVVIHSATKYL-DGQGRVLGGAVV--GSKELMEEVFGFLRTAGPTLSPFNAWVFLKGL-------- 253 (390)
T ss_pred h--------C---CcEEEeecceee-cCCcceEeEEEE--cCHHHHHHHHHHHHHhCCCCCHHHHHHHHccc--------
Confidence 1 2 237899999999 788999855444 67777777765544 33334444433332222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
+.+..+.+++.+++..+.+.|++.|++.
T Consensus 254 ------~tl~~R~~~~~~~a~~la~~L~~~p~v~ 281 (390)
T PRK08133 254 ------ETLSLRMEAHSANALALAEWLEAHPGVE 281 (390)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 2233345566778888999998877654
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=187.87 Aligned_cols=298 Identities=10% Similarity=0.073 Sum_probs=198.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhc-CCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIR-GEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~-~~gd~Vl 159 (463)
++++++++.+++... ..++. .-..++++++++.+.. .++ .+++++++++++..+++.... .+++.|+
T Consensus 46 ~p~v~~a~~~~~~~~----~~~~~-~~~~~~~~~la~~l~~------~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv 114 (375)
T PRK04260 46 HPQVQQALQKQAGLI----WHSPN-LYLNSLQEEVAQKLIG------DKDYLAFFCNSGAEANEAAIKIARKATGKQEII 114 (375)
T ss_pred CHHHHHHHHHHHHhc----CcccC-ccCCHHHHHHHHHHhc------CcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEE
Confidence 567999998888752 12332 2346788999988752 233 468899999999988887621 2345565
Q ss_pred Ec----cCcee-------------------cCCCc--ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC-HHH
Q 041151 160 LL----FHTTW-------------------KRQQI--GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS-EAN 213 (463)
Q Consensus 160 vp----~g~~~-------------------~~~~~--~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s-~~~ 213 (463)
+. +|... ....+ -.|+ +.+++.+.+ ++.+|+++.++|++|.+.+ .+.
T Consensus 115 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl-~~l~~~l~~------~~a~vi~e~v~~~~G~~~~~~~~ 187 (375)
T PRK04260 115 TFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDL-NSVKALVNK------NTAAVMLELVQGESGVLPADKDF 187 (375)
T ss_pred EECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCH-HHHHHhcCC------CeEEEEECCeECCCCCcCCCHHH
Confidence 53 22111 00001 1377 889888765 6888888899999998754 567
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++|.++|+++|+++|+||+|..+.. .+. ..+... .++ ..+ +.||||++ + +|+|+||++ +++
T Consensus 188 l~~~~~l~~~~~~~~i~De~~~g~g~-~g~-~~~~~~--~~~----~pd-----i~t~sK~l-~-~G~~ig~~~---~~~ 249 (375)
T PRK04260 188 VKALADYCQETGILLIVDEVQTGMGR-TGK-LYAFEH--YGI----EPD-----IFTLAKGL-A-NGVPVGAML---AKS 249 (375)
T ss_pred HHHHHHHHHHcCCEEEEechhhCCCc-ccc-hhhhHh--hCC----CCC-----EEEecccc-c-CCcceEEEE---EcH
Confidence 99999999999999999999987533 111 111111 111 222 34899999 5 799999999 588
Q ss_pred hHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeE
Q 041151 294 KTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMY 372 (463)
Q Consensus 294 ~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~ 372 (463)
++.+.+..... .+++.+++.+.++.++|+... .....++.++..+..++.+.+.+.+.+.+..+. ..|++
T Consensus 250 ~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~ 320 (375)
T PRK04260 250 SLGGAFGYGSHGSTFGGNKLSMAAASATLDIML--------TAGFLEQALENGNYLQEQLQKALQDKETVTTVR-GLGYM 320 (375)
T ss_pred HHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-ccceE
Confidence 88888765433 467788999999988874211 112234455566666666766666653333333 37888
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
+|+.+. . +...+ .+.+.++||.+.|. +...+|+++. .+++++++++++|+++
T Consensus 321 ~~~~~~--~------------~~~~~-~~~l~~~Gi~v~~~-------~~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 321 IGIETT--A------------DLSQL-VEAARDKGLIVLTA-------GTNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred EEEEec--C------------cHHHH-HHHHHhCCCEEecC-------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 886552 1 12343 45567789999874 2247999996 7899999999999765
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-20 Score=185.59 Aligned_cols=208 Identities=14% Similarity=0.159 Sum_probs=142.9
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC-------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH------------- 163 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g------------- 163 (463)
...|+.+. ...|++++|++++ . +..+++++++.++..++.+++ ++||+|+++ ++
T Consensus 59 y~r~~~p~-~~~Le~~lA~l~G------~--~~~~~~~sG~~Ai~~~l~~~l-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~ 128 (398)
T PRK07504 59 YSRYSNPT-VDMFEKRMCALEG------A--EDARATASGMAAVTAAILCQV-KAGDHVVAARALFGSCRYVVETLLPRY 128 (398)
T ss_pred eecCCCch-HHHHHHHHHHHhC------C--CeeeEecCHHHHHHHHHHHHh-CCCCEEEEcCCchhHHHHHHHHHHhhc
Confidence 34555443 5799999999875 2 223456677888988888887 899999997 33
Q ss_pred -cee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 164 -TTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 164 -~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
+++ .. ...|+ +.+++++++ ++|+|++++|+||||.+++ +++|.++|+++|+++|+|++|+...+ .
T Consensus 129 G~~v~~v--d~~d~-e~l~~ai~~------~tklV~lesp~NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~-~ 195 (398)
T PRK07504 129 GIESTLV--DGLDL-DNWEKAVRP------NTKVFFLESPTNPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLF-Q 195 (398)
T ss_pred CeEEEEE--CCCCH-HHHHHhcCc------CceEEEEECCCCCCcEecC---HHHHHHHHHHcCCEEEEECCcccccc-C
Confidence 222 11 13788 999999886 8999999999999999998 67777788899999999999986544 1
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH-HHHhhhh-hcccCChHHHHHHHH
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD-EIYKIAS-IALSPNVPAQIFMGL 319 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~~~~~ 319 (463)
.++ .+ + ..+++.|+||++ +.+|+++|++++ ++++.+. .++.... .....+.+....+..
T Consensus 196 ----~~~-~~--------g---aDivv~S~sK~l-~g~g~~~GG~vv--~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~ 256 (398)
T PRK07504 196 ----KPL-EL--------G---AHIVVYSATKHI-DGQGRCLGGVVL--SDKAWIEEHLQDYFRHTGPSLSPFNAWTLLK 256 (398)
T ss_pred ----Cch-hh--------C---CCEEEeeccccc-cCCccceEEEEE--eCcHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 111 11 1 247899999999 789999975554 5666654 3444333 333344444444443
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 320 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.|+ .+..+.++..++...+.+.|++.|++.
T Consensus 257 ~L~--------------tl~~R~~~~~~na~~la~~L~~~p~v~ 286 (398)
T PRK07504 257 GLE--------------TLPVRVRQQTESAAAIADFLAGHPKVA 286 (398)
T ss_pred ccc--------------hHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 332 223345555677888888888876654
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=186.32 Aligned_cols=201 Identities=11% Similarity=0.102 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------CceecCCC
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTWKRQQ 170 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~~~~~ 170 (463)
-...|++.+|++.+ .+..++++++++++..++.+++ ++||+|+++ + |+++. ..
T Consensus 65 ~~~~le~~lA~l~g--------~~~~i~~ssG~~Ai~~~l~all-~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~-~v 134 (398)
T PRK08249 65 TVQAFEEKVRILEG--------AEAATAFSTGMAAISNTLYTFL-KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVT-LC 134 (398)
T ss_pred HHHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEE-Ec
Confidence 35788999999875 3456667777899999999998 899999997 2 33331 11
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
...|+ +.+++++++ ++++|++++|+||||.+++ +++|+++|++++++||+|++|+.... . . ++ .
T Consensus 135 d~~d~-e~l~~~i~~------~tklV~ie~p~NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~-~-~---~l-~ 198 (398)
T PRK08249 135 ETGDH-EQIEAEIAK------GCDLLYLETPTNPTLKIVD---IERLAAAAKKVGALVVVDNTFATPIN-Q-N---PL-A 198 (398)
T ss_pred CCCCH-HHHHHhcCC------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCcCcccc-C-C---ch-h
Confidence 23578 999999887 8999999999999999998 66688888999999999999986533 1 1 11 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCC
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
. .. .++++|+||.+ +.+|.++ ||++ +++++++++...+. .....+.+.+..+...++
T Consensus 199 ~--------~~---Divv~S~sK~l-~g~~~~~gG~vv---~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~------ 257 (398)
T PRK08249 199 L--------GA---DLVIHSATKFL-SGHADALGGVVC---GSKELMEQVYHYREINGATMDPMSAYLILRGMK------ 257 (398)
T ss_pred h--------CC---CEEeccCceec-CCCCCceEEEEE---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcc------
Confidence 1 11 27889999999 6677776 5555 68889998887765 444556666655554442
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.+....++..+++..+.+.|++.|.+.
T Consensus 258 --------tL~~R~~~~~~na~~la~~L~~~p~v~ 284 (398)
T PRK08249 258 --------TLKLRVRQQQESAMALAKYLQTHPKVE 284 (398)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 222344556778888888888766543
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=185.71 Aligned_cols=308 Identities=12% Similarity=0.010 Sum_probs=199.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCC----HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGI----PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI------ 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~------ 151 (463)
.+.+++++.+++..++....+-....|+ .+|.+++|+|++ .+..++.+++..|...++.+++
T Consensus 118 ~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g--------~e~all~sSGy~AN~~~i~aL~~~~~~~ 189 (476)
T PLN02955 118 HPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK--------KEDCLVCPTGFAANMAAMVAIGSVASLL 189 (476)
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC--------CCcEEEECChHHHHHHHHHHHhhccccc
Confidence 7889999999998864322222223344 678888888874 5667777777888888888772
Q ss_pred -------cCCCCEEEEc--------cCceec-------CCCccc-ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 152 -------RGEGDGVVLL--------FHTTWK-------RQQIGV-LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 152 -------~~~gd~Vlvp--------~g~~~~-------~~~~~~-d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
.++++.|+.+ .|++.. ...+.. |+ +.|++.++.... +.++|++..-.++.|.+
T Consensus 190 ~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HND~-~~Le~~L~~~~~---~~~~Vv~EgV~SmdGdi 265 (476)
T PLN02955 190 AASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCDM-YHLNSLLSSCKM---KRKVVVTDSLFSMDGDF 265 (476)
T ss_pred cccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCCCH-HHHHHHHHhCCC---CceEEEEeCCCCCCCCc
Confidence 1456677776 233221 011223 66 999999976311 34555555669999999
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
.+ +.+|.++|++||+++|+||+|+.+.++ .... .. ...+|+ . .+..|+++||||+| | .+.|+++
T Consensus 266 ap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G-~~G~-G~---~e~~g~--~-~di~ii~~TLsKA~-G---~~GGfi~- 329 (476)
T PLN02955 266 AP---MEELSQLRKKYGFLLVIDDAHGTFVCG-ENGG-GV---AEEFNC--E-ADVDLCVGTLSKAA-G---CHGGFIA- 329 (476)
T ss_pred CC---HHHHHHHHHHcCcEEEEcccccCceec-CCCC-cH---HHHhCC--C-CCCcEEEEeCccch-h---ccCceee-
Confidence 88 666777778999999999999988873 2211 11 222322 1 23679999999998 4 4559988
Q ss_pred cCCChhHHHHHHhhhh-h-cccCChHHHHHH-HHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 289 TNIPPKTVDEIYKIAS-I-ALSPNVPAQIFM-GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 289 ~~~~~~~~~~l~~~~~-~-~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
+++++++.+..... . ..+..++...++ .+.+ + .......++++++++.+++.+.+ |+.+
T Consensus 330 --gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal----------~-l~~~~~~~r~~L~~n~~~fr~~~----G~~~- 391 (476)
T PLN02955 330 --CSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAV----------V-VARKEKWRRKAIWERVKEFKALS----GVDI- 391 (476)
T ss_pred --cHHHHHHHHHHhCCCCeecccccHHHHHHHHHHH----------H-HHhcCHHHHHHHHHHHHHHHHhc----CCCC-
Confidence 68889998887654 2 222233333222 2222 1 22222346778888888888742 5543
Q ss_pred cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHH
Q 041151 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESF 443 (463)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l 443 (463)
... ++.+.+.-+. ....+.+.|.++||.+.+......+.+...+||++. ++++||+++++.|
T Consensus 392 --~sP-I~pI~ig~~~-------------~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L 455 (476)
T PLN02955 392 --SSP-IISLVVGNQE-------------KALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITAL 455 (476)
T ss_pred --CCC-EEEEEeCCHH-------------HHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHH
Confidence 122 2222233221 233345667788999998777777777778999998 8999999999999
Q ss_pred HHHHHHHH
Q 041151 444 KKFNDEFM 451 (463)
Q Consensus 444 ~~~l~~~~ 451 (463)
+++.....
T Consensus 456 ~~~~~~~~ 463 (476)
T PLN02955 456 SSCLDFDN 463 (476)
T ss_pred HHHHhhhc
Confidence 98866543
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=193.04 Aligned_cols=293 Identities=16% Similarity=0.120 Sum_probs=191.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC------CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS------RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--- 152 (463)
|+.+++++.+.+............. .-..++|+.++++++ +++++|++|+|+++++..++.++..
T Consensus 11 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~v~~~~g~t~a~~~~l~~l~~~~~ 84 (353)
T TIGR03235 11 DPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALG------ADTEEVIFTSGATESNNLAILGLARAGE 84 (353)
T ss_pred CHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 8899999988775421111111111 113577888888876 6788999999999999999988751
Q ss_pred CCC-CEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 153 GEG-DGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 153 ~~g-d~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
.+| +.|+++ .|.++ ...++.+|+ +.+++.+++ ++++|++++++||||.+++
T Consensus 85 ~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~-~~l~~~l~~------~~~lv~~~~~~n~tG~~~~- 156 (353)
T TIGR03235 85 QKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDV-DELADAIRP------DTLLVSIMHVNNETGSIQP- 156 (353)
T ss_pred cCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCH-HHHHHhCCC------CCEEEEEEcccCCceeccC-
Confidence 245 677774 45555 234567899 999999876 7899999999999999988
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 291 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 291 (463)
+++|.++|+++|+++++|++++.... ..++ .+.+..+++.|.+|++ |++| +|++++
T Consensus 157 --~~~I~~l~~~~~~~~ivD~a~~~g~~-----~~~~-----------~~~~~D~~~~s~~K~~-gp~g--~g~l~~--- 212 (353)
T TIGR03235 157 --IREIAEVLEAHEAFFHVDAAQVVGKI-----TVDL-----------SADRIDLISCSGHKIY-GPKG--IGALVI--- 212 (353)
T ss_pred --HHHHHHHHHHcCCEEEEEchhhcCCc-----cccc-----------cccCCCEEEeehhhcC-CCCc--eEEEEE---
Confidence 67788888999999999999885322 1122 1122347778999987 8777 899986
Q ss_pred ChhHHHH--HHhh-------hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 292 PPKTVDE--IYKI-------AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 292 ~~~~~~~--l~~~-------~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
+++.... +... .. ...+.+.....++.++++ ......+.++++++++++++.+.|++ +|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~----------~~~~~~~~~~~~~~~l~~~l~~~l~~-~g 281 (353)
T TIGR03235 213 RKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAE----------IARRNAQAWEVKLRAMRNQLRDALQT-LG 281 (353)
T ss_pred ccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHhcc-CC
Confidence 4443221 1110 00 123344444455555542 12234566788999999999999988 58
Q ss_pred cccccCCc-eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC-CCcEEEEEecCCcCcH
Q 041151 362 VVCNFTEG-AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE-GIFHLRTTILPAEEDM 436 (463)
Q Consensus 362 ~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~-~~~~lRis~~~~~e~i 436 (463)
+++..+.. ....++.+.++.. +.+.+...|++ +|.|.+|..|+... +..++|.+++.+++++
T Consensus 282 ~~~~~~~~~~~~~i~~~~~~~~------------~~~~v~~~L~~-~i~v~~g~~~~~~~~~~~~~l~~~g~~~~~~ 345 (353)
T TIGR03235 282 VKLNGDPAETIPHILNFSIDGV------------NSEALIVNLRA-DAAVSTGSACSSSKYEPSHVLQAMGLDTDRA 345 (353)
T ss_pred eEEeCCcccccCCEEEEEeCCc------------CHHHHHHHHhC-CeEEEchhhcCCCCCCCCHHHHHcCCCHHHh
Confidence 88764332 2222222333321 23345566665 99999999997532 2336788887554443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=180.79 Aligned_cols=313 Identities=18% Similarity=0.205 Sum_probs=220.9
Q ss_pred cHHHHHHHHHHhhhcCC---CCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH--Hhc--
Q 041151 82 PADAIARAKHYLSLTSG---GLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC--VIR-- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~---~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~--l~~-- 152 (463)
.+.+++++...+....+ ..+.|+. ..-..+.|+.||+.++ +++++|++|+|++|+.++++.. ...
T Consensus 14 ~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llg------a~~~eIiFTSG~TEsnNlaI~g~~~a~~~ 87 (386)
T COG1104 14 DPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLG------ADPEEIIFTSGATESNNLAIKGAALAYRN 87 (386)
T ss_pred CHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhC------CCCCeEEEecCCcHHHHHHHHhhHHhhhc
Confidence 78999999887776421 3445542 2234578888888887 7889999999999999999998 331
Q ss_pred -CCCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 153 -GEGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 153 -~~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
+.|.+|+++ .|..+ +..+..+|+ +.|+++|++ ++.+|-+...||-||.+.+
T Consensus 88 ~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~-e~L~~al~~------~T~LVSim~aNnE~G~IQp- 159 (386)
T COG1104 88 AQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDL-EQLEEALRP------DTILVSIMHANNETGTIQP- 159 (386)
T ss_pred ccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcH-HHHHHhcCC------CceEEEEEecccCeeeccc-
Confidence 257788886 36565 556788999 999999998 8999999999999999988
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 291 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 291 (463)
+++|.++|+++++++.+|.+.+.. +-+..+..+ +-.+...|-+|.. |+.| +|.+++ .
T Consensus 160 --I~ei~~i~k~~~i~fHvDAvQa~G-----kipi~~~~~-----------~vD~ls~SaHK~~-GpkG--iGaLyv--~ 216 (386)
T COG1104 160 --IAEIGEICKERGILFHVDAVQAVG-----KIPIDLEEL-----------GVDLLSFSAHKFG-GPKG--IGALYV--R 216 (386)
T ss_pred --HHHHHHHHHHcCCeEEEehhhhcC-----ceecccccc-----------CcceEEeehhhcc-CCCc--eEEEEE--C
Confidence 777888999999999999999853 222333221 1235667788966 8888 899986 2
Q ss_pred ChhHHHHHH----hhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCcccc
Q 041151 292 PPKTVDEIY----KIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC-RNVVCN 365 (463)
Q Consensus 292 ~~~~~~~l~----~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-pg~~~~ 365 (463)
+.-....+. ..+. ...+.+.+.-.++..+++ .-..+++....++.+.++.|.+.|.+. |++.+.
T Consensus 217 ~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~----------~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~ 286 (386)
T COG1104 217 PGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAE----------IAVEELEEENARLRKLRDRLEDGLLEIIPDVYLN 286 (386)
T ss_pred CCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEc
Confidence 222222221 1112 233444555555555543 234456667778889999999999875 777766
Q ss_pred cCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CCcEEE
Q 041151 366 FTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GIFHLR 426 (463)
Q Consensus 366 ~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~~~lR 426 (463)
... -...+. +.+|.- ..+.+...|..+||.+..|+.|.... ..+.+|
T Consensus 287 g~~~~rlP~~~~--~~f~gv------------~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR 352 (386)
T COG1104 287 GDDEPRLPNILN--FSFPGV------------EGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIR 352 (386)
T ss_pred CCcccCCCCeEE--EEeCCC------------cHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEE
Confidence 432 122222 233321 34445667888999999999996531 135899
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHHHHHhc
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEFMEQYE 455 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~~~~~~ 455 (463)
+|++ ++++|++.+++.|+++++++++...
T Consensus 353 ~S~g~~tt~eei~~~~~~l~~~i~~lr~~~~ 383 (386)
T COG1104 353 FSLGRFTTEEEIDAAAEALKEIIKRLRELSP 383 (386)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999 8999999999999999999887543
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=186.52 Aligned_cols=207 Identities=11% Similarity=0.136 Sum_probs=143.9
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F-------------- 162 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~-------------- 162 (463)
+..|+.+. ...|++.+|++++ .+..+++++++.++..++.+++ ++||+|+++ +
T Consensus 53 y~r~~~p~-~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~~l~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~ 122 (391)
T TIGR01328 53 YSRLGNPT-VSNLEGRIAFLEG--------TEAAVATSSGMGAIAATLLTIL-KAGDHLISDECLYGCTFALLEHALTKF 122 (391)
T ss_pred eeCCCCch-HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCcchHHHHHHHHHHhcC
Confidence 34455443 5689999999985 2446777777889999999998 899999997 2
Q ss_pred Ccee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 163 HTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 163 g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
|+++ ..+. -|+ +.+++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+...+.
T Consensus 123 G~~~~~vd~--~d~-e~l~~~i~~------~tklV~le~p~Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~- 189 (391)
T TIGR01328 123 GIQVDFINM--AIP-EEVKAHIKD------NTKIVYFETPANPTMKLID---MERVCRDAHSQGVKVIVDNTFATPMLT- 189 (391)
T ss_pred CeEEEEECC--CCH-HHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCchhccC-
Confidence 2333 1111 167 889998876 8999999999999999987 667778888999999999999864331
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhhh--h-cccCChHHHHHH
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIAS--I-ALSPNVPAQIFM 317 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~--~-~~~~~~~~q~~~ 317 (463)
. ++ . . . ..|++.|+||.+ +.+|.++ |+++ +++++++.++.... . +...+......+
T Consensus 190 -~---~~-~----~----g---~Divv~S~sK~l-gg~g~~~gG~v~---~~~~li~~l~~~~~~~~~g~~l~~~~a~l~ 249 (391)
T TIGR01328 190 -N---PV-A----L----G---VDVVVHSATKYI-GGHGDVVAGLIC---GKAELLQQIRMVGIKDMTGSVISPFDAWLI 249 (391)
T ss_pred -C---ch-h----c----C---CCEEEccccccc-cCCCCceEEEEE---cCHHHHHHHHHHHHHhCCCCCCCcHHHHHH
Confidence 1 11 1 1 1 237889999999 7788775 6665 68898888876432 1 223333333333
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
...|+ .+..+.++..++...+.+.|++.|++.
T Consensus 250 l~~L~--------------tl~~r~~~~~~na~~la~~L~~~p~v~ 281 (391)
T TIGR01328 250 LRGLK--------------TLNIRMKRHSENAMKVAEYLKSHPAVE 281 (391)
T ss_pred HhCcC--------------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 33332 222345566778888888888877654
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=187.39 Aligned_cols=304 Identities=15% Similarity=0.138 Sum_probs=195.2
Q ss_pred cHHHHHHHHHHhh--hcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--
Q 041151 82 PADAIARAKHYLS--LTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-- 151 (463)
Q Consensus 82 p~~~~~a~~~~~~--~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-- 151 (463)
|+.+++++.+.+. ....+...... .....++|+.++++++ .++++|++++|+++++..++.++.
T Consensus 16 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g------~~~~~v~~~~g~t~al~~~l~~l~~~ 89 (404)
T PRK14012 16 DPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIG------ADPREIVFTSGATESDNLAIKGAAHF 89 (404)
T ss_pred CHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcC------cCcCeEEEeCCHHHHHHHHHHHHHHh
Confidence 8889999888765 21111111111 1234567788888775 667899999999999999887763
Q ss_pred -cCCCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 152 -RGEGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 152 -~~~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
.++||+|+++ .|.++ .+.++.+|+ +.|++++++ ++++|++++++||||.+.+
T Consensus 90 ~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~-~~l~~~i~~------~t~lv~~~~~~n~tG~~~~ 162 (404)
T PRK14012 90 YQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDL-EKLEAAMRD------DTILVSIMHVNNEIGVIQD 162 (404)
T ss_pred hcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCH-HHHHHhcCC------CCEEEEEECcCCCccchhh
Confidence 2689999996 26655 334566899 999999987 7999999999999999987
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
+++|.++|++++++||+|++++.... +..+... + ..+++.|++|.+ |.+ ++|++++
T Consensus 163 ---~~~I~~la~~~g~~vivD~a~~~g~~-----~~~~~~~--------~---~D~~~~s~~K~~-gp~--g~G~l~~-- 218 (404)
T PRK14012 163 ---IAAIGEICRERGIIFHVDAAQSVGKV-----PIDLSKL--------K---VDLMSFSAHKIY-GPK--GIGALYV-- 218 (404)
T ss_pred ---HHHHHHHHHHcCCEEEEEcchhcCCc-----ccCcccC--------C---CCEEEEehhhcc-CCC--ceEEEEE--
Confidence 67788888999999999999975322 1122111 1 236778999977 644 4899886
Q ss_pred CChhHHHHHHhh-hh------hccc-CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 291 IPPKTVDEIYKI-AS------IALS-PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 291 ~~~~~~~~l~~~-~~------~~~~-~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
+++....+... .. ...+ .+......+.+++. ....+.....++.++.++++.+.|++++++
T Consensus 219 -~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~----------~~~~~~~~~~~~~~~l~~~l~~~L~~~~~i 287 (404)
T PRK14012 219 -RRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAAR----------IAKEEMATENERIRALRDRLWNGIKDIEEV 287 (404)
T ss_pred -ecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 33322222211 00 0111 22222222323321 112234456677888888899999888777
Q ss_pred ccccC-----CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------C
Q 041151 363 VCNFT-----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------G 421 (463)
Q Consensus 363 ~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~ 421 (463)
.+..+ ...++++ +..+. ...+ ...| .++.|..|..|.... .
T Consensus 288 ~~~~~~~~~~~~~~~~~--~~~~~-------------~~~~-~~~l--~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (404)
T PRK14012 288 YLNGDLEQRVPGNLNVS--FNYVE-------------GESL-IMAL--KDLAVSSGSACTSASLEPSYVLRALGLNDELA 349 (404)
T ss_pred EEeCCccccCCCEEEEE--EeCcC-------------HHHH-HHhC--CCeEEEchhhhCCCCCCCCHHHHHcCCChhhc
Confidence 65422 1223344 33221 1222 2333 377787776653310 1
Q ss_pred CcEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 422 IFHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 422 ~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+.+|+++. ++++|++++++.|++++++++
T Consensus 350 ~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~ 381 (404)
T PRK14012 350 HSSIRFSLGRFTTEEEIDYAIELVRKSIGKLR 381 (404)
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 357999999 899999999999999988763
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-19 Score=180.24 Aligned_cols=202 Identities=14% Similarity=0.124 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCc--------------eecCCCc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHT--------------TWKRQQI 171 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~--------------~~~~~~~ 171 (463)
...|++.+|++.+ ..+++++++| ++++..++.+++ +|||+|+++ ++. ++. ...
T Consensus 62 ~~~Le~~lA~l~g-------~~~~v~~~sG-~~Ai~~~l~all-~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~-~v~ 131 (405)
T PRK08776 62 RDLLGEALAELEG-------GAGGVITATG-MGAINLVLNALL-QPGDTLVVPHDAYGGSWRLFNALAKKGHFALI-TAD 131 (405)
T ss_pred HHHHHHHHHHHhC-------CCceEEEcCH-HHHHHHHHHHHh-CCCCEEEEccCCchHHHHHHHHHHHhcCcEEE-EEC
Confidence 3567777777653 2345555555 799999999998 899999997 332 220 011
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
..|+ +.|++.+++ ++|+|++++|+||||.+.+ +++|+++|+++|++||+|++|..... ..++ .
T Consensus 132 ~~d~-~~l~~~i~~------~tklV~l~~P~NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~-----~~pl-~- 194 (405)
T PRK08776 132 LTDP-RSLADALAQ------SPKLVLIETPSNPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL-----QKPL-E- 194 (405)
T ss_pred CCCH-HHHHHhcCc------CCeEEEEECCCCCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc-----CCcc-c-
Confidence 2477 999988876 7999999999999999865 78888899999999999999975321 1122 1
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCch
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDIS 330 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~ 330 (463)
+ .. .+++.|.||+++|..++..|++++ .++++.+++..... .....+++.+.++...+
T Consensus 195 ---~----ga---Divv~S~tK~l~g~~~~~~G~vv~--~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl--------- 253 (405)
T PRK08776 195 ---F----GA---DLVLHSTTKYINGHSDVVGGAVVA--RDAELHQQLVWWANALGLTGSPFDAFLTLRGL--------- 253 (405)
T ss_pred ---c----cC---CEEEecCceeecCCCCceEEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh---------
Confidence 1 22 288999999994445688999875 56788888876554 34556666666655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 331 YEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
++++.+.++..+++..+.+.|++.|.+.
T Consensus 254 -----~tl~~r~~~~~~na~~la~~L~~~p~v~ 281 (405)
T PRK08776 254 -----RTLDARLRVHQENADAIAALLDGHAAVN 281 (405)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 3344567778888999999998876553
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=183.66 Aligned_cols=303 Identities=14% Similarity=0.128 Sum_probs=192.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+++.+.......|+ .+...++++.+.+. ...+.+++++++++|+..+++.... .+|
T Consensus 53 ~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~la~~L~~~----~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~ 123 (397)
T TIGR03246 53 HPELVKALIEQADKLWHIGNGYT-----NEPVLRLAKKLVDA----TFADKVFFCNSGAEANEAALKLARRYALDKHGAD 123 (397)
T ss_pred CHHHHHHHHHHHHhcccccCccC-----CHHHHHHHHHHHhh----CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 78899999888876211111121 23344455555433 2246999999999999999997620 123
Q ss_pred -CEEEE-c---cCcee-----cC-----CC----------c-ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 156 -DGVVL-L---FHTTW-----KR-----QQ----------I-GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 156 -d~Vlv-p---~g~~~-----~~-----~~----------~-~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
..|+. . +|... .. .. + -.|+ +.+++.+.+ ++++|+++.++++.|...
T Consensus 124 r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~aavi~Epi~~~~G~~~ 196 (397)
T TIGR03246 124 KSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDL-AAAKALISD------KTCAVIVEPIQGEGGVVP 196 (397)
T ss_pred CCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCH-HHHHHHhcc------CeEEEEEecccCCCCCcC
Confidence 34444 3 33221 00 00 0 1377 999998875 788888885555556443
Q ss_pred -CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 210 -SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 210 -s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
+.+.+++|.++|++||+++|+||+|..+... +.. ... ..+++ . .-+.++||.+ + .|+++||++
T Consensus 197 ~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~-G~~-~a~----~~~gv--~-----pDi~t~~K~l-g-gG~pigav~- 260 (397)
T TIGR03246 197 ADPAFLKGLRELCDRHNALLIFDEVQTGVGRT-GEL-YAY----MHYGV--T-----PDILTSAKAL-G-GGFPIGAML- 260 (397)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEechhhcCCcc-ccc-hhh----hhcCC--C-----CCEEEeehhh-h-CCcceeEEE-
Confidence 8899999999999999999999999765331 111 111 11111 1 1234899999 6 799999999
Q ss_pred cCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---C-cc
Q 041151 289 TNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---N-VV 363 (463)
Q Consensus 289 ~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g-~~ 363 (463)
+++++++.+..... .+++.+++.+.++.+.|+ ... .+++.++++++.+++.+.|+++. + +.
T Consensus 261 --~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~-----------~~~-~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~ 326 (397)
T TIGR03246 261 --TTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLD-----------LVN-TPELLAGVKQRHDLFVDGLEKINARYNVFS 326 (397)
T ss_pred --EcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHH-----------HHh-hccHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 58888888865432 456678888888877764 222 23567788888889998887751 1 22
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
...+.|.++.+ .+..+.. .....++ ..|.++||.+.+. + .+++|++++ .++++++++++
T Consensus 327 ~vrg~G~~~~i-~~~~~~~----------~~~~~~~-~~l~~~Gv~~~~~---g----~~~lR~~p~~~~t~~~i~~~~~ 387 (397)
T TIGR03246 327 EIRGKGLLIGA-VLTEAYQ----------GKAKQFV-NAAAEEGVIALIA---G----PNVVRFAPSLVISDDDIDEGLA 387 (397)
T ss_pred eeecCceEEEE-EEcCchh----------hHHHHHH-HHHHHCCeEEeec---C----CCEEEEeCCCCCCHHHHHHHHH
Confidence 23334443332 2211100 0133444 4566789998762 2 247999666 89999999999
Q ss_pred HHHHHHHH
Q 041151 442 SFKKFNDE 449 (463)
Q Consensus 442 ~l~~~l~~ 449 (463)
+|.+++.+
T Consensus 388 ~l~~~l~~ 395 (397)
T TIGR03246 388 RFERAIEQ 395 (397)
T ss_pred HHHHHHHH
Confidence 99998865
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=180.11 Aligned_cols=271 Identities=10% Similarity=0.063 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----CCCCEEEEc-------------cCcee----c
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----GEGDGVVLL-------------FHTTW----K 167 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~~gd~Vlvp-------------~g~~~----~ 167 (463)
.++++.+|++++ ++++++++++|+++++..++.++.. ++||+|+++ .|+++ .
T Consensus 62 ~~~~~~la~~~g------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~ 135 (373)
T TIGR03812 62 EEVVGSLGNLLH------LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPL 135 (373)
T ss_pred HHHHHHHHHHhC------CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEee
Confidence 455566666654 5667889999999999888776531 367899997 56665 3
Q ss_pred CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC-C----C
Q 041151 168 RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ-D----E 242 (463)
Q Consensus 168 ~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~-~----~ 242 (463)
..++.+|+ +.+++.+.+ ++..++++.|+||||.+.+ +++|.++|+++++++++|++|..+... . .
T Consensus 136 ~~~~~~d~-~~l~~~l~~------~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~ 205 (373)
T TIGR03812 136 DEDYTVDV-KDVEDLIDD------NTIGIVGIAGTTELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYN 205 (373)
T ss_pred CCCCCcCH-HHHHHHHhh------CcEEEEEECCCCCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCC
Confidence 44677899 999999987 5655666668999999977 667778888999999999999864320 0 0
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhh-c--------ccCChHH
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI-A--------LSPNVPA 313 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~--------~~~~~~~ 313 (463)
.....+ ...+-..+..|.+| + +.++.++|++++ .++++++.+...... . .+.+...
T Consensus 206 ~~~~d~-----------~~~~~d~~~~s~~K-~-~~~~~~~G~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~ 270 (373)
T TIGR03812 206 PPPFDF-----------SLPGVQSITIDPHK-M-GLSPIPAGGILF--RSKSYLKYLSVDAPYLTVKKQATITGTRSGAS 270 (373)
T ss_pred CCCccc-----------cCCCCCEEEECccc-c-CCCcCCceEEEE--eCHHHHhhhcccCcccCCCCCcceEeechhHH
Confidence 000111 00011134567889 5 567888887765 577887776422221 1 1122334
Q ss_pred HHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCceeEEeeeccCChhhHHHHhhcC
Q 041151 314 QIFMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGFNSCRNVV-CNFTEGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 314 q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
..++..+++ .. ....++..++..++++++.+.|+++ |+. +..+..++. .+ ..+.
T Consensus 271 ~~~~~~~l~----------~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v-~~--~~~~---------- 326 (373)
T TIGR03812 271 AAATYAVIK----------YLGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNIV-AF--EVDD---------- 326 (373)
T ss_pred HHHHHHHHH----------HhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceEE-EE--EeCC----------
Confidence 444444442 11 1224567788999999999999988 543 444544433 32 3331
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKK 445 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~ 445 (463)
..+ +.+.|.++||.+.++. ...++|+++. .+++|+++++++|++
T Consensus 327 ---~~~-v~~~L~~~gi~v~~~~------~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 327 ---PEE-VRKKLRDRGWYVSVTR------CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred ---HHH-HHHHHHHCCceeccCC------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 223 4455677899997753 2248999998 788999999999875
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-20 Score=184.12 Aligned_cols=305 Identities=11% Similarity=0.060 Sum_probs=190.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--C------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--G------ 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~------ 153 (463)
++.+.+++.+.+.... .++. ....+...++|+.+.+. ...+.|++++++++++..+++.... .
T Consensus 33 ~p~v~~ai~~q~~~~~----~~~~-~~~~~~~~~la~~l~~~----~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~ 103 (382)
T PLN00144 33 DPDWVKAVAEQAGTLA----HVSN-VYHTIPQVELAKRLVAS----SFADRVFFCNSGTEANEAAIKFARKYQRVRAPDK 103 (382)
T ss_pred CHHHHHHHHHHHHhcC----Cccc-cccCHHHHHHHHHHHhc----CCCCeEEEeCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 6789999988887621 1111 11234455666666543 2346899999999999999986531 1
Q ss_pred C------CCEEEEc----cCcee----------cCCCcc-----------cChHHHHHHHHHHHHhcCCceeEEEEECCC
Q 041151 154 E------GDGVVLL----FHTTW----------KRQQIG-----------VLIINDLQQSVAQARSKGITVRAMVIINPG 202 (463)
Q Consensus 154 ~------gd~Vlvp----~g~~~----------~~~~~~-----------~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~ 202 (463)
+ ..+|+.- +|... ....+. .|+ +.|++.+... ++++|++.--+
T Consensus 104 ~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~~-----~~aavi~eP~q 177 (382)
T PLN00144 104 KDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNL-EAARKLIQKG-----KTAAVFVEPVQ 177 (382)
T ss_pred ccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCH-HHHHHhcCCC-----CeEEEEEcccc
Confidence 0 1345553 33221 000111 167 8888887532 68888877448
Q ss_pred CCCccCCCHHH--HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 203 NPTGQCLSEAN--LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 203 NPtG~~~s~~~--l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
|| |.+++.+. +++|.++|++||+++|+||+|..+... +... . ..+ .++ ..+ +.||||++ + +|
T Consensus 178 ~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~-g~~~-~-~~~-~~~----~PD-----i~t~sK~l-~-~G 241 (382)
T PLN00144 178 GE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRT-GYLW-A-HEA-YGV----EPD-----IMTLAKPL-A-GG 241 (382)
T ss_pred CC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc-chHh-h-hhh-cCC----CCC-----EEEecccc-c-CC
Confidence 88 55555455 999999999999999999999986542 2111 1 011 111 222 68899999 4 79
Q ss_pred ceeEEEEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 281 QRGGYFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
+|+||++ +++++.+.+.... ..+++.+++.+.++.+.|+-.. .+. +.+..+.+.+.+ ++.+.+.+.+.
T Consensus 242 ~pig~v~---~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~--~~~---~~~~~~~~g~~l---~~~l~~~~~~~ 310 (382)
T PLN00144 242 LPIGAVL---VTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKIS--KPG---FLASVAKKGEYL---RELLRRKLGGN 310 (382)
T ss_pred cceEEEE---EcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh--hch---HHHHHHHHHHHH---HHHHHHHHhhC
Confidence 9999999 5888888886433 3577889999998885553110 011 122222233333 22333444444
Q ss_pred CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHH
Q 041151 360 RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMP 437 (463)
Q Consensus 360 pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~ 437 (463)
|.+.-+.. .|+++|+.+..+ ...+ ...+.++||.+.|+.. .+.+|++++ .++++++
T Consensus 311 ~~~~~vrg-~G~~~~l~l~~~--------------~~~~-~~~~~~~Gv~i~~~~~------~~~lrl~p~~~~~~~~i~ 368 (382)
T PLN00144 311 PHVKEVRG-VGLLVGIQLDVP--------------AGPL-VDACRDSGLLVLTAGK------GDVVRLVPPLVISEAELE 368 (382)
T ss_pred CCceeeec-CceEEEEEecCc--------------cHHH-HHHHHHCCeEEeecCC------CCEEEEeCCCccCHHHHH
Confidence 43322223 789999665311 2333 4556789999998621 247999999 6889999
Q ss_pred HHHHHHHHHHHHH
Q 041151 438 AIMESFKKFNDEF 450 (463)
Q Consensus 438 ~~~~~l~~~l~~~ 450 (463)
+++++|.+++.++
T Consensus 369 ~~~~~l~~~l~~~ 381 (382)
T PLN00144 369 QAVEILADCLPAL 381 (382)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998653
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-19 Score=181.04 Aligned_cols=204 Identities=10% Similarity=0.088 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC--------------ceecCC
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH--------------TTWKRQ 169 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g--------------~~~~~~ 169 (463)
.....|++++|++++ .. ..+++ +++++++..++.+++ ++||+|+++ ++ +++ ..
T Consensus 61 p~~~~Le~~lA~~~g------~~-~~i~~-~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~-~~ 130 (388)
T PRK07811 61 PTRTALEEQLAALEG------GA-YGRAF-SSGMAATDCLLRAVL-RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEY-TP 130 (388)
T ss_pred ccHHHHHHHHHHHhC------CC-ceEEe-CCHHHHHHHHHHHHh-CCCCEEEEcCCCchHHHHHHHHhCcCCCeEE-EE
Confidence 457899999999985 22 23444 455899999999998 999999997 33 222 11
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
....|+ +.+++.+++ ++|+|++++|+||||.+.+ +++|+++|++++++||+|++|+..... . ++
T Consensus 131 ~d~~d~-e~l~~~i~~------~tklV~ie~p~NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~--~---p~- 194 (388)
T PRK07811 131 VDLSDL-DAVRAAITP------RTKLIWVETPTNPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ--Q---PL- 194 (388)
T ss_pred eCCCCH-HHHHHhcCc------CCeEEEEECCCCCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC--C---ch-
Confidence 112578 999999877 8999999999999998755 778888999999999999999865331 1 11
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
.. . -.|++.|+||+++|..+.+.||+++ .++++.+++...+. .....+......+...|+
T Consensus 195 ~~--------g---aDivv~S~sK~l~g~~~~~gG~vv~--~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~------ 255 (388)
T PRK07811 195 AL--------G---ADVVVHSTTKYIGGHSDVVGGALVT--NDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK------ 255 (388)
T ss_pred hh--------C---CcEEEecCceeecCCCCcEEEEEEE--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC------
Confidence 11 1 1389999999994333467899986 46777777766554 233344444333333332
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.+..+.++..++...+.+.|++.|++.
T Consensus 256 --------tl~~R~~~~~~na~~la~~L~~~p~v~ 282 (388)
T PRK07811 256 --------TLAVRMDRHSENAEAVAEFLAGHPEVS 282 (388)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 233345556778888889998877654
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=179.99 Aligned_cols=201 Identities=12% Similarity=0.099 Sum_probs=145.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cC
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KR 168 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~ 168 (463)
....+|++.++++++ .+..++++++++|+..++.+++ ++||+|+++ + |+++ ..
T Consensus 40 p~~~~le~~la~l~g--------~~~a~~~~sG~~Ai~~~l~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v 110 (369)
T cd00614 40 PTVDALEKKLAALEG--------GEAALAFSSGMAAISTVLLALL-KAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFV 110 (369)
T ss_pred hhHHHHHHHHHHHHC--------CCCEEEEcCHHHHHHHHHHHHc-CCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEe
Confidence 346788888888874 3566777778999999999998 899999997 2 2222 11
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
+ .-|+ +.+++.+++ ++++|++++|+||+|.+.+ +++|+++|+++|+++|+|++|+...+. .++
T Consensus 111 ~--~~d~-~~l~~~i~~------~~~~v~~e~~~np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~-----~~~ 173 (369)
T cd00614 111 D--PDDP-EALEAAIKP------ETKLVYVESPTNPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ-----RPL 173 (369)
T ss_pred C--CCCH-HHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC-----Chh
Confidence 1 1256 889888876 7999999999999999987 678888899999999999999865331 111
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCCh-hHHHHHHhhhh-hcccCChHHHHHHHHhcCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPP-KTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLK 325 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~-~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~ 325 (463)
.+ +..+++.|+||.+ +.+| +++||++. ++ ++++.+..... .+...++....++...++
T Consensus 174 -~~-----------g~Divv~S~tK~l-~g~~~~~gG~v~~---~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~--- 234 (369)
T cd00614 174 -EL-----------GADIVVHSATKYI-GGHSDVIAGVVVG---SGEALIQRLRFLRLALGTILSPFDAWLLLRGLK--- 234 (369)
T ss_pred -hh-----------CCcEEEeccceec-cCCCCceEEEEEe---CcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCC---
Confidence 11 1348899999999 5454 88999994 55 88888877654 344556555555444442
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.+..+.++..++...+.+.|++.|++.
T Consensus 235 -----------tl~~r~~~~~~na~~la~~L~~~~~v~ 261 (369)
T cd00614 235 -----------TLPLRMERHSENALKVAEFLEKHPKVE 261 (369)
T ss_pred -----------CHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 122345567888889999999887653
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-19 Score=179.64 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=143.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC--------------
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH-------------- 163 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g-------------- 163 (463)
..|+.+ ....|++.++++++ . +..+++++++.++..++.+++ +|||+|+++ ++
T Consensus 60 ~r~~~p-~~~~le~~lA~l~g------~--~~~i~~~sG~~Al~~~l~~ll-~~Gd~Viv~~~~y~~t~~~~~~~~~~~G 129 (403)
T PRK07503 60 SRISNP-TLALLEQRMASLEG------G--EAAVALASGMGAITATLWTLL-RPGDEVIVDQTLYGCTFAFLHHGLGEFG 129 (403)
T ss_pred eCCCCc-hHHHHHHHHHHHhC------C--CcEEEEcCHHHHHHHHHHHHc-CCCCEEEEccCccchHHHHHHHHHhhCC
Confidence 344443 36789999998875 2 334566667889999999888 899999997 32
Q ss_pred cee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCC
Q 041151 164 TTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 164 ~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~ 242 (463)
+++ ..+ ..|+ +.+++++++ ++|+|++++|+||||.+.+ +++|.++|+++|++||+|++|+.... .
T Consensus 130 ~~v~~vd--~~d~-~~l~~~i~~------~tklV~le~p~NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~--~ 195 (403)
T PRK07503 130 VTVRHVD--LTDP-AALKAAISD------KTRMVYFETPANPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYL--Q 195 (403)
T ss_pred EEEEEeC--CCCH-HHHHHhcCc------cCcEEEEeCCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc--C
Confidence 222 111 1267 999998877 7999999999999999987 67778888899999999999986533 1
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhh--hh-hcccCChHHHHHHH
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI--AS-IALSPNVPAQIFMG 318 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~ 318 (463)
. ++ .. . ..|+++|+||++ +.+| +|+||++ ++++++++++.. .. .+...+.+.+..+.
T Consensus 196 ~---~l-~~--------g---~Di~v~S~tK~l-~g~gd~~gG~v~---~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l 256 (403)
T PRK07503 196 R---PL-EL--------G---ADLVVHSATKYL-GGHGDITAGLVV---GGKALADRIRLEGLKDMTGAVMSPFDAFLLM 256 (403)
T ss_pred C---ch-hh--------C---CCEEEccccccc-cCCCceeEEEEE---cCHHHHHHHHhhhHHhCcCCCCCHHHHHHHH
Confidence 1 11 11 1 238999999999 6555 7889888 588888888743 32 23445555555444
Q ss_pred HhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 319 LMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
..|+ .+..+.++..++...+.+.|++.|.+.
T Consensus 257 ~~L~--------------tl~~r~~~~~~na~~~a~~L~~~p~v~ 287 (403)
T PRK07503 257 RGLK--------------TLALRMDRHCASAQAVAEWLARHPAVE 287 (403)
T ss_pred cCcc--------------hHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4432 222233445577777888888776554
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=180.84 Aligned_cols=283 Identities=12% Similarity=0.082 Sum_probs=181.0
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F-------------- 162 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~-------------- 162 (463)
+..|+.+. ..+|++.++++.+ .+++++++|+++++..++.+++ +|||+|+++ +
T Consensus 59 Y~r~~~pt-~~~Le~~lA~l~g--------~~~~l~~~sgt~Ai~~~l~al~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~ 128 (394)
T PRK07050 59 YGLHATPT-SLALAQRLAEIEG--------GRHALLQPSGLAAISLVYFGLV-KAGDDVLIPDNAYGPNRDHGEWLARDF 128 (394)
T ss_pred cCCCCCHH-HHHHHHHHHHHhC--------CCeEEEeccHHHHHHHHHHHHh-CCCCEEEEecCCcccHHHHHHHHHHhc
Confidence 34454432 4677777877753 5789999999999999999998 999999997 2
Q ss_pred Ccee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 163 HTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 163 g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
|+++ .-+ ..+. +.+++.+++ ++|+|++++|+||+|. ..++++|+++|++++++||+|++|+...+
T Consensus 129 Gi~v~~vd--~~~~-~~l~~~i~~------~tklV~le~p~Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~~~-- 194 (394)
T PRK07050 129 GITVRFYD--PLIG-AGIADLIQP------NTRLIWLEAPGSVTME---VPDVPAITAAARARGVVTAIDNTYSAGLA-- 194 (394)
T ss_pred CeEEEEEC--CCCH-HHHHHhcCC------CCeEEEEECCCCCCcc---HhhHHHHHHHHHHcCCEEEEECCcccccc--
Confidence 3333 111 1145 778888776 8999999999999874 56799999999999999999999976432
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHh
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLM 320 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~ 320 (463)
..++ . .+..|++.|+||.++|..+.+.|++++ ++++++++++..+. .+.+.++.....+...
T Consensus 195 ---~~~l-~-----------~GaDi~v~S~tK~~~g~~~~~gG~v~~--~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~ 257 (394)
T PRK07050 195 ---FKPF-E-----------HGVDISVQALTKYQSGGSDVLMGATIT--ADAELHAKLKLARMRLGIGVSADDCSLVLRG 257 (394)
T ss_pred ---cCHH-H-----------cCCeEEEEECCceecCCCCeeEEEEEE--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 1111 1 112489999999996566678999886 67888888877665 4555566555444443
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cC-----------------CceeEEeeeccCChh
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FT-----------------EGAMYSFPQIRLPPK 382 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~-----------------~g~~~~~~~~~~~~~ 382 (463)
++. +..+.++..++...+.+.|++.|++..+ .| .|+++.+ .+..+
T Consensus 258 l~t--------------l~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~---~l~~~ 320 (394)
T PRK07050 258 LPS--------------LQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSV---VFDER 320 (394)
T ss_pred CCc--------------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEE---EECCC
Confidence 331 1123444556666777777776554321 11 1333332 32211
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC--C------------CCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ--K------------EGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--~------------~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
. -..+.+.....|+..++.+.-|..... + ...+.+|||++. |+.+.+++.|.+++.
T Consensus 321 ~--------~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl--E~~~dl~~dl~~al~ 390 (394)
T PRK07050 321 Y--------SPAQVDAFVEALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL--EDEADLIADLEQALE 390 (394)
T ss_pred C--------CHHHHHHHHHcCCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc--CCHHHHHHHHHHHHH
Confidence 0 001122233445555554444433221 0 012579999996 467788888888876
Q ss_pred HH
Q 041151 449 EF 450 (463)
Q Consensus 449 ~~ 450 (463)
+.
T Consensus 391 ~~ 392 (394)
T PRK07050 391 AA 392 (394)
T ss_pred Hh
Confidence 54
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-19 Score=178.99 Aligned_cols=207 Identities=13% Similarity=0.142 Sum_probs=145.9
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F-------------- 162 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~-------------- 162 (463)
+..|+.+ -..+|++.++++++ .+.+++++|+++++..++.+++ ++||+|+++ +
T Consensus 48 y~r~~~p-~~~~le~~la~l~g--------~~~~~~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~ 117 (380)
T TIGR01325 48 YSRYANP-TVAAFEERIAALEG--------AERAVATATGMSAIQAALMTLL-QAGDHVVASRSLFGSTVGFISEILPRF 117 (380)
T ss_pred eecCCCc-hHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCCcchHHHHHHHHHHHh
Confidence 3455544 36789999998874 3577889999999999999998 899999996 2
Q ss_pred Ccee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 163 HTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 163 g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
|+++ ..+ ..|+ +.+++++++ ++++|++++|+||+|.+.+ +++|.++|+++|+++|+|++|+...+ .
T Consensus 118 g~~v~~v~--~~d~-~~l~~~i~~------~tklV~le~p~np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~-~ 184 (380)
T TIGR01325 118 GIEVSFVD--PTDL-NAWEAAVKP------NTKLVFVETPSNPLGELVD---IAALAELAHAIGALLVVDNVFATPVL-Q 184 (380)
T ss_pred CCEEEEEC--CCCH-HHHHHhcCC------CceEEEEECCCCCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-C
Confidence 2332 111 1267 888888876 7999999999999999987 67778888899999999999986533 1
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHH
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGL 319 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~ 319 (463)
. ++ .+ . ..|++.|+||++ +.+|.++ |+++ +++++++.+.+... .....++.....+..
T Consensus 185 -~---pl-~~--------g---~Divv~S~sK~l-~g~g~~~gG~vv---~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~ 244 (380)
T TIGR01325 185 -Q---PL-KL--------G---ADVVVYSATKHI-DGQGRVMGGVIA---GSEELMAEVAVYLRHTGPAMSPFNAWVLLK 244 (380)
T ss_pred -C---ch-hh--------C---CCEEEeecccee-cCCCCeEEEEEE---eCHHHHHHHHHHHHhhCCCCCHHHHHHHHh
Confidence 1 11 11 2 237889999999 6688876 6666 68888888877654 333334343333322
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 320 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.+ +.+..+.++..+++..+.+.|+++|++.
T Consensus 245 ~l--------------~tl~~r~~~~~~~a~~la~~L~~~p~v~ 274 (380)
T TIGR01325 245 GL--------------ETLSLRMQKQFDSALAIAEWLQAQPQVQ 274 (380)
T ss_pred cc--------------CcHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 22 2222345556778888888898877654
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-19 Score=176.49 Aligned_cols=272 Identities=13% Similarity=0.110 Sum_probs=175.1
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F-------------- 162 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~-------------- 162 (463)
+..|+.+ ....|++++|+++ . +++++++++++++..++.+++ ++||+|+++ +
T Consensus 45 y~ry~~p-~~~~Le~~lA~l~--------~-~~~v~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~~~~~~~~~l~~~ 113 (366)
T PRK07582 45 YGRASNP-TWRALEAALGELE--------G-AEALVFPSGMAAITAVLRALL-RPGDTVVVPADGYYQVRALAREYLAPL 113 (366)
T ss_pred eECCCCc-cHHHHHHHHHHHc--------C-CCEEEECCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHHHhcC
Confidence 4556554 5789999999986 2 344555555689999999997 899999996 1
Q ss_pred CceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCC
Q 041151 163 HTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 163 g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~ 242 (463)
|+++.. ...+. + .+ .+.+ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|... + +
T Consensus 114 G~~v~~--v~~~~-~-~~-~~~~------~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~~-~--~ 176 (366)
T PRK07582 114 GVTVRE--APTAG-M-AE-AALA------GADLVLAETPSNPGLDVCD---LAALAAAAHAAGALLVVDNTTATP-L--G 176 (366)
T ss_pred eEEEEE--ECCCC-h-HH-Hhcc------CceEEEEECCCCCCCCccC---HHHHHHHHHHcCCEEEEECCCCCc-c--c
Confidence 333300 00111 1 11 2222 7899999999999998765 788888999999999999999642 1 1
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhc
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMV 321 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 321 (463)
.. ++ . + .. .++++|+||++.|.+|+|+||++. +++++++++...+. .....+++....+...+
T Consensus 177 ~~--p~-~----~----g~---Divv~S~sK~l~G~~g~~~G~v~~--~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l 240 (366)
T PRK07582 177 QR--PL-E----L----GA---DLVVASDTKALTGHSDLLLGYVAG--RDPELMAAVERWRLLAGAIPGPFEAWLAHRSL 240 (366)
T ss_pred cC--ch-h----c----CC---cEEEecccccccCCCCeeEEEEEc--CcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 11 11 1 1 22 278899999997778899999985 46788888887665 34455666665555555
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-------C-----------CceeEEeeeccCChhh
Q 041151 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF-------T-----------EGAMYSFPQIRLPPKA 383 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-------~-----------~g~~~~~~~~~~~~~~ 383 (463)
+. +..+.++..++...+.+.|++.|.+..+. | .||++.+ ++.
T Consensus 241 ~t--------------l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~---~~~--- 300 (366)
T PRK07582 241 GT--------------LGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSF---ELA--- 300 (366)
T ss_pred cc--------------HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEE---EeC---
Confidence 31 22233556678888999998877654221 2 3554443 322
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-------------CCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-------------EGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-------------~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+.+.+.+.+...++... +..+|.. -..+.+|+|++. |+.+..++.|.+++++
T Consensus 301 -----------~~~~~~~~~~~l~~~~~-~~s~G~~~sl~~~~~~~~~~~~~~liR~svGl--E~~~dli~dl~~al~~ 365 (366)
T PRK07582 301 -----------DAAAAERFVAASRLVVA-ATSFGGVHTSADRRARWGDAVPEGFVRLSCGI--EDTDDLVADLERALDA 365 (366)
T ss_pred -----------CHHHHHHHHHhCCccee-cccCCCccchhhhHHHcCCCCCCCeEEEEecc--CCHHHHHHHHHHHHhh
Confidence 12334566777676443 2223220 113579999995 3567777777777754
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=180.58 Aligned_cols=292 Identities=15% Similarity=0.134 Sum_probs=191.8
Q ss_pred cHHHHHHHHHHhhhcCCCCC----ccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---c
Q 041151 82 PADAIARAKHYLSLTSGGLG----AYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---R 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~----~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~ 152 (463)
|+.+++++.+.+.....+.. .++. ..-..++|+.++++++ .++++|++|+|+++++..++..+. .
T Consensus 12 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g------~~~~~v~~t~~~t~a~~~~l~~~~~~~~ 85 (364)
T PLN02651 12 DPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIG------ADPKEIIFTSGATESNNLAIKGVMHFYK 85 (364)
T ss_pred CHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCCHHHHHHHHHHHHHHhcc
Confidence 88999999887654211111 1111 1113466777777765 567899999999999888776652 1
Q ss_pred CCCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 153 GEGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 153 ~~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
++||+|+++ .|+++ ...++.+|+ +.+++++++ +++++++++++||||.+.+
T Consensus 86 ~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~-~~l~~~i~~------~t~lv~v~~~~n~tG~~~~-- 156 (364)
T PLN02651 86 DKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDL-DELAAAIRP------DTALVSVMAVNNEIGVIQP-- 156 (364)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCH-HHHHHhcCC------CcEEEEEECCCCCceeccc--
Confidence 689999986 35554 234567899 999999987 7999999999999999988
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+++|.++|+++|+++++|.+++.... +..+ ++.+-.+++.|.+|++ |++| +|++++ +
T Consensus 157 -l~~I~~~~~~~g~~~~vD~a~~~g~~-----~~~~-----------~~~~~D~~~~s~hK~~-gp~G--~g~l~v---~ 213 (364)
T PLN02651 157 -VEEIGELCREKKVLFHTDAAQAVGKI-----PVDV-----------DDLGVDLMSISGHKIY-GPKG--VGALYV---R 213 (364)
T ss_pred -HHHHHHHHHHcCCEEEEEcchhhCCc-----ccCc-----------ccCCCCEEEechhhhC-CCCc--eEEEEE---c
Confidence 67788889999999999999986322 1222 2222347889999965 7666 788886 4
Q ss_pred hhHHHHHHhhh-------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcc
Q 041151 293 PKTVDEIYKIA-------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CRNVV 363 (463)
Q Consensus 293 ~~~~~~l~~~~-------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~ 363 (463)
++....+.... . ...+++.....++.++++ ......+.++++.++..+++.+.|.+ +||+.
T Consensus 214 ~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~----------~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~ 283 (364)
T PLN02651 214 RRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACE----------LAMKEMDYDEKHMKALRERLLNGLRAKLGGVR 283 (364)
T ss_pred CCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEE
Confidence 43333332111 1 133455556666666653 22334566778888889999999975 67888
Q ss_pred cccCCc-----eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CC
Q 041151 364 CNFTEG-----AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GI 422 (463)
Q Consensus 364 ~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~ 422 (463)
+..|.. ...+. +.++.. +..+ +...|.+ |.++.|+.|.... ..
T Consensus 284 i~~~~~~~~~~~~i~~--~~~~~~-----------~~~~-~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~ 347 (364)
T PLN02651 284 VNGPRDPEKRYPGTLN--LSFAYV-----------EGES-LLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAH 347 (364)
T ss_pred EECCCCcccCcCCEEE--EEeCCC-----------CHHH-HHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhC
Confidence 876521 11222 222211 2334 3444554 9999998775421 13
Q ss_pred cEEEEEec--CCcCcHH
Q 041151 423 FHLRTTIL--PAEEDMP 437 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~ 437 (463)
+.+|+|++ ++++|++
T Consensus 348 ~~vR~S~~~~~t~~did 364 (364)
T PLN02651 348 GSLRLGVGRFTTEEEVD 364 (364)
T ss_pred ceEEEEcCCCCCHHHcC
Confidence 58999999 7777653
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=182.22 Aligned_cols=313 Identities=11% Similarity=0.121 Sum_probs=193.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------- 153 (463)
++.+++++.+.+.........+. .....+|.+.+++++ ..+.+++++++++++..+++... .
T Consensus 93 ~p~v~~ai~~ql~~~~~~~~~~~-~~~~~~la~~L~~~~--------~~~~~~f~~SGseA~e~AlklAr-~~~~~~~g~ 162 (474)
T PLN02624 93 HPKIIKALTEQAEKLTLSSRAFY-NDKFPEFAEYLTSMF--------GYDMVLPMNTGAEGVETAIKLAR-KWGYEKKGI 162 (474)
T ss_pred CHHHHHHHHHHHHhcCCcccccC-CHHHHHHHHHHHhhc--------CCCeEEEeCChHHHHHHHHHHHH-HHHHhhcCC
Confidence 78999999998886321111111 122234555555442 23689999999999999998543 2
Q ss_pred -CCCEEEEc-----cCcee--------c--CCCc-----------ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 154 -EGDGVVLL-----FHTTW--------K--RQQI-----------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 154 -~gd~Vlvp-----~g~~~--------~--~~~~-----------~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
++...++. +|... + ...+ -.|+ +.+++.++.. +.++.+|++..++|++|
T Consensus 163 ~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~iaaiiiEpv~~~~G 238 (474)
T PLN02624 163 PKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDL-DALEKIFEED---GDRIAAFLFEPIQGEAG 238 (474)
T ss_pred CCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCH-HHHHHHHHhC---CCCEEEEEECCccCCCC
Confidence 13434443 33211 0 0000 0167 8899888642 23688999999999999
Q ss_pred cCCCHHH-HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 207 QCLSEAN-LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 207 ~~~s~~~-l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
.++++++ +++|.++|++||+++|+||+|..+..+ +. .... ... +.. .-+.++||.+ |.+++++|+
T Consensus 239 ~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~Grt-G~----~~a~-~~~----~i~---pDiv~lsK~l-ggG~~piga 304 (474)
T PLN02624 239 VVIPPDGYLKAVRELCSKHNVLMIADEIQTGLART-GK----MLAC-DWE----EVR---PDVVILGKAL-GGGVIPVSA 304 (474)
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcC-cc----hhhH-Hhc----CCC---CCEEEecccc-cCCCCccee
Confidence 9887774 999999999999999999999865432 11 1111 011 111 1234478999 767799999
Q ss_pred EEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC
Q 041151 286 FEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CR 360 (463)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~p 360 (463)
++ .++++++.+..... .+++.+++.+.++.+.|+. +.+ ..+.++..++.+.+.+.|++ +|
T Consensus 305 v~---~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~-----------l~~-~~l~~~~~~~~~~l~~~L~~l~~~~~ 369 (474)
T PLN02624 305 VL---ADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQV-----------VQD-EKLAERSAKLGQELRDQLQKIQKQFP 369 (474)
T ss_pred ee---ecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHH-----------HHh-chHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99 47778777754443 4567888999888888741 111 12333444444455544443 22
Q ss_pred C-cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHH
Q 041151 361 N-VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMP 437 (463)
Q Consensus 361 g-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~ 437 (463)
. +....+.|.++.+ .+..+.. +.....+++. .|.++||.+.|+. .+++||++. .++++++
T Consensus 370 ~~i~~vrg~G~~~~i-~l~~~~~--------~~~~a~~~~~-~L~e~GV~v~p~~-------~~~lR~~p~l~~t~e~id 432 (474)
T PLN02624 370 KLIKEVRGRGLLNAV-VLNSPKL--------GPVSAYDVCL-KLKERGLLAKPTH-------DTIIRLAPPLSISEDELQ 432 (474)
T ss_pred CceEEEEeeEEEEEE-EecCCCc--------ChHHHHHHHH-HHHhCCeEEecCC-------CCEEEEECCccCCHHHHH
Confidence 1 3334455655542 2332110 0001334444 4678999998852 247999975 8899999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041151 438 AIMESFKKFNDEFMEQY 454 (463)
Q Consensus 438 ~~~~~l~~~l~~~~~~~ 454 (463)
+++++|++++++-..++
T Consensus 433 ~~l~~L~~~l~~~~~~~ 449 (474)
T PLN02624 433 ECSKALSDVLEHDLPKL 449 (474)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999988754433
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=178.38 Aligned_cols=207 Identities=13% Similarity=0.145 Sum_probs=149.6
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------c
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------F 162 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~ 162 (463)
+..|+.+. ..+|++.+|++.+ .++.+++++++.++..++.+++ ++||+|+++ .
T Consensus 64 Y~r~~~p~-~~~le~~lA~l~g--------~~~al~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~ 133 (403)
T PRK07810 64 YSRYGNPT-VSMFEERLRLIEG--------AEACFATASGMSAVFTALGALL-GAGDRLVAARSLFGSCFVVCNEILPRW 133 (403)
T ss_pred eeCCCCch-HHHHHHHHHHHhC--------CCcEEEECChHHHHHHHHHHHh-CCCCEEEEccCCcchHHHHHHHHHHHc
Confidence 45566554 6789999999874 3477777888899999999998 899999986 3
Q ss_pred Ccee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 163 HTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 163 g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
|+++ ..+ ..|+ +.+++++++ ++++|++++|+||||.+.+ +++|+++|++++++||+|++|+...+.
T Consensus 134 G~~v~~vd--~~d~-~~l~~ai~~------~tklV~~esp~Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~- 200 (403)
T PRK07810 134 GVETVFVD--GEDL-SQWEEALSV------PTQAVFFETPSNPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQ- 200 (403)
T ss_pred CcEEEEEC--CCCH-HHHHHhcCc------CceEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccC-
Confidence 4444 111 2377 999999887 7999999999999999986 777888888999999999999865431
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHH-HHHhhhh-hcccCChHHHHHHH
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVD-EIYKIAS-IALSPNVPAQIFMG 318 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~~~~ 318 (463)
. ++ . . + ..|++.|+||.+ +.+|.++ ||++ ++++.+. .++.... .....+++.+..+.
T Consensus 201 -~---~~-~----~----g---aDivv~S~tK~l-~g~g~~~gG~v~---~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l 260 (403)
T PRK07810 201 -R---GL-P----L----G---ADVVVYSGTKHI-DGQGRVLGGAIL---GDREYIDGPVQKLMRHTGPALSAFNAWVLL 260 (403)
T ss_pred -C---hh-h----c----C---CcEEEccCCcee-cCCcCceeEEEE---eChHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 1 11 1 1 1 247899999999 7788887 7776 4666554 4554433 34566777666666
Q ss_pred HhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 319 LMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
..|+ .+..+.++..++...+.+.|++.|++.
T Consensus 261 ~~L~--------------tl~~R~~~~~~~a~~~a~~L~~~p~v~ 291 (403)
T PRK07810 261 KGLE--------------TLALRVRHSNASALRIAEFLEGHPAVR 291 (403)
T ss_pred hccC--------------cHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 6553 233345556777777888888877654
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=173.19 Aligned_cols=209 Identities=11% Similarity=0.125 Sum_probs=149.4
Q ss_pred CccCCC--CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee---------
Q 041151 101 GAYSDS--RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW--------- 166 (463)
Q Consensus 101 ~~Y~~~--~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~--------- 166 (463)
..|+.. .+...|+++||++.+ .+++++++|+++|+..++.+++ ++||+|+++ ++...
T Consensus 53 ~~Y~r~~npt~~~Le~~iA~le~--------~~~~~~~~sG~~Ai~~~l~all-~~GD~Vvv~~~~Y~~t~~l~~~~l~~ 123 (394)
T PRK09028 53 MFYGRRGTPTHFAFQAAIVELEG--------GAGTALYPSGAAAISNALLSFL-KAGDHLLMVDSCYEPTRDLCDKILKG 123 (394)
T ss_pred ceecCCCCchHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHhhhh
Confidence 346552 234699999998853 3578999999999999999998 899999997 21111
Q ss_pred ---cCCCcc-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCC
Q 041151 167 ---KRQQIG-VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 167 ---~~~~~~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~ 242 (463)
....+. -+. +.+++++++ ++|+|++++|+||||.+ .++++|+++|+++|+++++|++|+....
T Consensus 124 ~Gi~v~~v~~~~~-e~l~~~l~~------~TklV~lespsNPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~p~~--- 190 (394)
T PRK09028 124 FGIETTYYDPMIG-EGIRELIRP------NTKVLFLESPGSITMEV---QDVPTLSRIAHEHDIVVMLDNTWASPIN--- 190 (394)
T ss_pred cceEEEEECCCCH-HHHHHhcCc------CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCcccccc---
Confidence 000111 144 778888776 89999999999999877 5689999999999999999999986422
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhc
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMV 321 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 321 (463)
. .++ . + +-.|++.|.+|+++|..++..|+++ .++++.+.+..... .....++.....+..-|
T Consensus 191 ~--~Pl-~----~-------GaDivv~S~tK~l~Gh~d~~~G~~~---~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl 253 (394)
T PRK09028 191 S--RPF-E----M-------GVDISIQAATKYIVGHSDVMLGTAT---ANEKHWDQLREHSYLMGQCTSPDDVYLAMRGL 253 (394)
T ss_pred C--Ccc-c----c-------CceEEEEeCCeEecCCCCEEEEEEE---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHccc
Confidence 1 111 1 1 1248999999999888889999876 57777777765543 34445555554444444
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
+ .+.-+.++..++...+.+.|++.|.+
T Consensus 254 ~--------------TL~lR~~~~~~na~~la~~L~~~p~v 280 (394)
T PRK09028 254 R--------------TLGVRLAQHEKNALKVANWLATRPEV 280 (394)
T ss_pred C--------------cHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3 23334556788888899999987655
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=174.15 Aligned_cols=308 Identities=15% Similarity=0.117 Sum_probs=199.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----C--C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----G--E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~--~ 154 (463)
++.+.+++.+++... . .++... ..+...++++.+.+..+ ..+.+++++++++|+..+++.... + +
T Consensus 58 ~p~v~~ai~~q~~~~---~-~~~~~~-~~~~~~~la~~L~~~~~---~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~ 129 (408)
T PRK04612 58 DPDLVAALTEQAGKL---W-HTSNVF-YSAPPLKLAEELVTASR---FAEKVFLCNSGTEANEAAIKLVRKWASSQGRPA 129 (408)
T ss_pred CHHHHHHHHHHHHhc---c-cccccc-CCHHHHHHHHHHHhhCC---CCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCC
Confidence 788999998888762 1 122111 23445566666654311 126899999999999999986531 1 2
Q ss_pred CC-EEEEc----cCcee--------c--C-------CC----cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 155 GD-GVVLL----FHTTW--------K--R-------QQ----IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 155 gd-~Vlvp----~g~~~--------~--~-------~~----~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
+. +|+.- +|... + . .+ .-.|. +.+++.+.. +..+.++..|.+++|.+
T Consensus 130 ~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~aavi~eP~~~~gg~ 202 (408)
T PRK04612 130 DKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDV-EALEAAMAG------GDVAAVMLEPIQGEGGV 202 (408)
T ss_pred CCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCH-HHHHHhhCC------CCEEEEEECCccCCCCC
Confidence 23 45553 33221 0 0 00 11266 888887753 45666788888888877
Q ss_pred CC--HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 209 LS--EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 209 ~s--~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
++ .+.+++|.++|++|++++|+||+|..+... +. .+... ..+.+..+.||||.+ + +|+|+||+
T Consensus 203 ~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~-G~---~~a~~---------~~~~~pdi~t~~K~l-~-~G~piga~ 267 (408)
T PRK04612 203 MPAAPGFLARVRALCDQHDALLVLDEIQCGMGRT-GT---LFAHW---------QEQVTPDIVTLAKAL-G-GGFPIGAM 267 (408)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-Cc---hhhhh---------hcCCCCCEEEEcchh-c-CCCceEEE
Confidence 66 568999999999999999999999875442 11 12111 112356788999999 6 79999999
Q ss_pred EecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC
Q 041151 287 EMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----RN 361 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg 361 (463)
+ +++++.+.+.... ..+++.+++.+.++.+.|+ .+++ .++.++.+++.+++.+.|+++ +-
T Consensus 268 ~---~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~-----------~~~~-~~l~~~~~~~g~~l~~~l~~l~~~~~~ 332 (408)
T PRK04612 268 L---AGPKVAETMQFGAHGTTFGGNPLAAAVARVALR-----------KLAS-PQIAANVARQSAALRAGLEALNAEFGV 332 (408)
T ss_pred E---ECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 8 4778887776543 3567788999999988874 2222 345666777777777777664 22
Q ss_pred cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
+..+...|-++.. .+.-+.. .....+...+.++||.+.+. +.+.+|+... .+++|++++
T Consensus 333 i~~vrg~Gl~~~i-~~~~~~~-----------~~a~~i~~~l~~~Gvlv~~~-------g~~~lRl~Ppl~it~eeid~~ 393 (408)
T PRK04612 333 FAQVRGRGLMLGA-VLAPAHA-----------GQAGAILDLAAEHGLLLLQA-------GPDVLRFVPALNLTDAELADG 393 (408)
T ss_pred eeeeeccceEEEE-EecCchh-----------hHHHHHHHHHHHCCeEEeeC-------CCCEEEEcCCccCCHHHHHHH
Confidence 2233444533332 2210000 12233455677899999762 2247999987 789999999
Q ss_pred HHHHHHHHHHHHHH
Q 041151 440 MESFKKFNDEFMEQ 453 (463)
Q Consensus 440 ~~~l~~~l~~~~~~ 453 (463)
+++|.+++.++.++
T Consensus 394 l~~l~~~l~~~~~~ 407 (408)
T PRK04612 394 LARLRLALADYVAQ 407 (408)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876543
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=173.96 Aligned_cols=204 Identities=13% Similarity=0.139 Sum_probs=142.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-----------cCCCccc
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-----------KRQQIGV 173 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-----------~~~~~~~ 173 (463)
...+|++.+|++++ .+++++++|+++++..++.+++ ++||+|+++ ++... ......+
T Consensus 54 ~~~~lE~~lA~l~g--------~~~~l~~~sG~~Ai~~~l~~ll-~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~ 124 (385)
T PRK08574 54 TLRPLEEALAKLEG--------GVDALAFNSGMAAISTLFFSLL-KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP 124 (385)
T ss_pred cHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC
Confidence 46899999999975 4678888899999999999998 899999997 22211 1111235
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 253 (463)
|. +.+++++++. ++|+|++++|+||||.+++ +++|+++|+++|++||+|++|+.... ..++ .
T Consensus 125 d~-~~l~~~i~~~-----~tklV~ie~p~NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~~-----~~~l-~--- 186 (385)
T PRK08574 125 ST-EDIIEAIKEG-----RTKLVFIETMTNPTLKVID---VPEVAKAAKELGAILVVDNTFATPLL-----YRPL-R--- 186 (385)
T ss_pred CH-HHHHHhcCcc-----CceEEEEECCCCCCCEecC---HHHHHHHHHHcCCEEEEECCCCcccc-----CChh-h---
Confidence 77 8999888752 6899999999999999998 66788889999999999999975322 1111 1
Q ss_pred hcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 254 ~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
. + ..+++.|+||++ +.+|-. .|++++ ++++++++++..+. .+...+++....+...++
T Consensus 187 -~----G---aDivv~S~sK~l-~g~~d~~gG~vi~--~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~--------- 246 (385)
T PRK08574 187 -H----G---ADFVVHSLTKYI-AGHNDVVGGVAVA--WSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLK--------- 246 (385)
T ss_pred -h----C---CcEEEeeCceee-cCCCCceeEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC---------
Confidence 1 1 248999999999 555644 576665 67888888876655 333444443333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.+..+.++..++...+.+.|++.|.+.
T Consensus 247 -----tL~~R~~~~~~na~~la~~L~~~p~v~ 273 (385)
T PRK08574 247 -----TLEVRFERQCRNAMAIAEFLSEHPKVA 273 (385)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 122334455667777888888776553
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-20 Score=171.50 Aligned_cols=281 Identities=15% Similarity=0.198 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC---CCC--EEEEc---cC---cee-----cCCCcc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG---EGD--GVVLL---FH---TTW-----KRQQIG 172 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~---~gd--~Vlvp---~g---~~~-----~~~~~~ 172 (463)
.++|.+.|.+.++.--+.-++.--|++++|++|++..++.+|... .+. .|+.. +- ... ....|.
T Consensus 45 s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~ 124 (363)
T PF04864_consen 45 SPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA 124 (363)
T ss_dssp -HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE
T ss_pred cHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc
Confidence 478888888887544344344448999999999999999999622 122 33332 11 111 111233
Q ss_pred cChHHHHHHHHHHHHhcCCceeEE-EEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAM-VIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i-~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
-|. ..+.+ . ......| ++++||||.|.+ .+. +++..+..+|.|-+|.+-.|++ ....+
T Consensus 125 Gda-~~~~~---~----~~~~~~IElVTSPNNPDG~l-----r~~---V~~g~~~k~I~D~AYYWPhyTp---I~~~a-- 183 (363)
T PF04864_consen 125 GDA-SNFKN---S----DNPSPYIELVTSPNNPDGQL-----REA---VLNGSSGKVIHDLAYYWPHYTP---ITAPA-- 183 (363)
T ss_dssp EEC-CCGTT--------S-CCGEEEEEESS-TTT--------------SSTTTEEEEEEE-TT-STTTS------S-B--
T ss_pred ccH-Hhhcc---C----CCCCCeEEEEeCCCCCcccc-----cch---hcCCCCcceeeeeeeecccccc---cCCCC--
Confidence 333 22210 0 0024555 788999999997 333 3356788899999999877731 11111
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCC---
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPG--- 327 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~--- 327 (463)
++ .|.+.|+||.- |.+|.|+||+++ .++++.+++.++.. .+.+++.-+|.-++.+|+....+
T Consensus 184 --------D~---DiMLFT~SK~T-GHAGSR~GWAlV--KD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~ 249 (363)
T PF04864_consen 184 --------DH---DIMLFTLSKLT-GHAGSRFGWALV--KDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGT 249 (363)
T ss_dssp -------------SEEEEEHHHHC-S-GGG-EEEEEE--S-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCH
T ss_pred --------CC---ceEEEEEeccc-Cccccccceeee--cCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccC
Confidence 33 38999999998 999999999999 78999999999886 78999999999998887631100
Q ss_pred ---CchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCc--------ccccCCceeEEeeeccCChhhHHHHhhcC
Q 041151 328 ---DISYEQFVRESKGILESLRRRARMMTDGFNSC-----RNV--------VCNFTEGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 328 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----pg~--------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
...+.++ -++.+++|-+.|.+.+..- |.+ +-.....+-|.|++++-++
T Consensus 250 ~~~~~~~F~f------~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~ee---------- 313 (363)
T PF04864_consen 250 EKGTEDIFHF------GYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREE---------- 313 (363)
T ss_dssp HTTTTSHHHH------HHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSCG----------
T ss_pred CCCccchHHH------HHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCcc----------
Confidence 0011112 1223344444445555432 111 1112235579998887432
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
+ ..|...|++.||.-+.|..||. +..++|||+..++++++.++++|.++
T Consensus 314 ---d-~DC~~~l~~~~I~tr~G~~fga--~~ryVRlSml~~~d~Fd~l~~rL~~l 362 (363)
T PF04864_consen 314 ---D-EDCYAVLREAKIITRSGVLFGA--DSRYVRLSMLKRDDDFDQLLERLSKL 362 (363)
T ss_dssp ---G-SSHHHHHHCTTEEEEEGGGGTS---TTEEEEESSS-HHHHHHHHHHHHCC
T ss_pred ---c-ccHHHHHHhCCcccCCCCccCC--CCCeEEEeccCCHHHHHHHHHHHHhh
Confidence 2 2377889999999999999997 45699999999999999999999764
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-18 Score=170.75 Aligned_cols=295 Identities=16% Similarity=0.202 Sum_probs=203.5
Q ss_pred CcHHHHHHHHHHhhhcCCCC--CccCC----CCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHH---
Q 041151 81 FPADAIARAKHYLSLTSGGL--GAYSD----SRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCV--- 150 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~--~~Y~~----~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l--- 150 (463)
+|+.+++++.+.+....... ..+.. ..-..++|+.++++++ .++ ++|++++|++.++..++..+
T Consensus 11 ~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg------~~~~~~v~~~~~~t~a~~~~~~~l~~~ 84 (371)
T PF00266_consen 11 MPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLG------APPDEEVVFTSNGTEALNAVASSLLNP 84 (371)
T ss_dssp -BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHT------SSTTEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcC------Cccccccccccccchhhhhhhhccccc
Confidence 38999999988877532111 11111 1122478888888886 667 79999999999999999999
Q ss_pred hcCCCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 151 IRGEGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 151 ~~~~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
+ ++|++|++. .|.++ ...+..+|+ +.+++.+++ ++++|+++..+|-||...
T Consensus 85 ~-~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~-~~~~~~l~~------~~~lv~~~~~~~~tG~~~ 156 (371)
T PF00266_consen 85 L-KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDL-EDLEEALNP------DTRLVSISHVENSTGVRN 156 (371)
T ss_dssp G-TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSH-HHHHHHHHT------TESEEEEESBETTTTBBS
T ss_pred c-ccccccccccccccccccccccccccchhhhccccccccchhhh-hhhhhhhcc------ccceEEeecccccccEEe
Confidence 6 799999886 46665 345667898 999999986 899999999999999999
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+ +++|.++|+++++++++|.+++.... ...+ .+.+-.+++.|..| |+|.+| +|++++
T Consensus 157 p---i~~I~~~~~~~~~~~~vD~~~~~g~~-----~id~-----------~~~~~D~~~~s~~K-l~gp~G--~g~l~v- 213 (371)
T PF00266_consen 157 P---IEEIAKLAHEYGALLVVDAAQSAGCV-----PIDL-----------DELGADFLVFSSHK-LGGPPG--LGFLYV- 213 (371)
T ss_dssp S---HHHHHHHHHHTTSEEEEE-TTTTTTS-----S--T-----------TTTTESEEEEESTS-TTSSST--EEEEEE-
T ss_pred e---eceehhhhhccCCceeEechhccccc-----cccc-----------cccccceeeecccc-cCCCCc--hhhhee-
Confidence 8 77788888899999999999986432 1222 22233479999999 668888 799986
Q ss_pred CCChhHHHHHHhhhh-h---------------------cccCChHHHHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHH
Q 041151 290 NIPPKTVDEIYKIAS-I---------------------ALSPNVPAQIFMGLMVNPLKPGDISYEQF-VRESKGILESLR 346 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~-~---------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 346 (463)
+++.++++..... . ..+++.....++..+++ .+ ..-.++++++..
T Consensus 214 --~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~----------~~~~~g~~~i~~~~~ 281 (371)
T PF00266_consen 214 --RPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALK----------LLEEIGIERIRERIR 281 (371)
T ss_dssp --EHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred --hhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHh----------hhhccccccchhhhh
Confidence 8888888853321 0 01333444444444442 12 112566788888
Q ss_pred HHHHHHHHHhhcCCCcccccC-----CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC--
Q 041151 347 RRARMMTDGFNSCRNVVCNFT-----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-- 419 (463)
Q Consensus 347 ~~~~~l~~~L~~~pg~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-- 419 (463)
+..+++.+.|.+++++.+..| .++.. .+.++ .. +.+.+...|++.||.+..|..+..+
T Consensus 282 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~-~~~~~--~~------------~~~~~~~~L~~~~I~~~~G~~~~~~~~ 346 (371)
T PF00266_consen 282 ELAEYLREALEELPGIEVLGPDDEPRRPSIV-SFNLP--GS------------DADDVVKYLEERGIAVSTGSACAGPSL 346 (371)
T ss_dssp HHHHHHHHHHHHTTTEEESSSSCGGBGTTEE-EEEET--TS------------SHHHHHHHHHHHTEEEEESTTTCHHHH
T ss_pred hHHHHHHhhhhcCCceeEeeecccccccceE-EEeec--CC------------CHHHHHHHHhhcCEEEeccCcccHHHH
Confidence 889999999999988777543 12333 32232 11 3344566677789999998776511
Q ss_pred ---CCCcEEEEEec--CCcCcHHHH
Q 041151 420 ---EGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 420 ---~~~~~lRis~~--~~~e~i~~~ 439 (463)
.-.+.+|+|+. ++++|++++
T Consensus 347 ~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 347 DILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp HHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred HHhCCCCEEEEeccCCCCHHHHhhC
Confidence 01258999999 888888764
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=176.98 Aligned_cols=315 Identities=13% Similarity=0.102 Sum_probs=200.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+++.+. ....+.. ...+...++++.+.+.... -..+.+++++++++|+..+++....-.| ..|+.
T Consensus 58 ~p~v~~ai~~ql~~~--~~~~~~~--~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~ 132 (421)
T PRK06777 58 HPKVVAAVRQQLDQF--THTAYQI--VPYASYVTLAERINALAPI-DGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIA 132 (421)
T ss_pred CHHHHHHHHHHHhhc--ccccccc--cCChHHHHHHHHHHHhCCC-CCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 678999998888763 1111211 1123444556655433110 1135899999999999999986531123 34544
Q ss_pred c----cCcee-----cC------CCcc---------------------cChHHHHHHHHHHHHhcCCceeEEEEECCCCC
Q 041151 161 L----FHTTW-----KR------QQIG---------------------VLIINDLQQSVAQARSKGITVRAMVIINPGNP 204 (463)
Q Consensus 161 p----~g~~~-----~~------~~~~---------------------~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NP 204 (463)
- +|... .. ..++ .++ +.+++.++.. ....++.+|++.-..+.
T Consensus 133 ~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~l~~~~~~~-~~~~~iaavi~Epv~~~ 210 (421)
T PRK06777 133 FGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEAL-SSVERLFKAD-IAPDQVAAILLEPIQGE 210 (421)
T ss_pred EcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHH-HHHHHHHHhc-cCCCceEEEEECCccCC
Confidence 3 22221 00 0000 124 6677776531 01125677777655667
Q ss_pred Ccc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee
Q 041151 205 TGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG 283 (463)
Q Consensus 205 tG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 283 (463)
.|. +++.+.+++|.++|++||+++|+||+|..+.++ +. ..+.. .+++ .. . +.++||.+ + +|+|+
T Consensus 211 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~-g~-~~~~~----~~~~--~p---D--iv~~sK~l-~-~G~pi 275 (421)
T PRK06777 211 GGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFART-GK-LFAME----YYDV--KP---D--LITMAKSL-G-GGMPI 275 (421)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccC-Cc-hhhhh----hcCC--CC---C--EEeeehhh-c-CCCce
Confidence 775 678999999999999999999999999986552 22 11221 1211 11 1 23799999 6 89999
Q ss_pred EEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---
Q 041151 284 GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--- 359 (463)
Q Consensus 284 G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 359 (463)
||++ +++++++.+..... .+++.+++.|.++.+.|+ ..++ +++.++++++.+++.+.|+++
T Consensus 276 gav~---~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~-----------~~~~-~~l~~~~~~~g~~l~~~L~~l~~~ 340 (421)
T PRK06777 276 SAVV---GRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLD-----------VIAE-EKLCQRALILGAHLVEVLEKAKAS 340 (421)
T ss_pred EEEE---EcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 58888888765443 577889999999998874 2222 356777788888888888764
Q ss_pred -CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHH---HHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCc
Q 041151 360 -RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFY---CLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAE 433 (463)
Q Consensus 360 -pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~ 433 (463)
|.+..+.+.|.++.+ .+..+.. + .++.++ +...+.++||.+.|+..|+ +++||++. .++
T Consensus 341 ~~~i~~vrg~G~~~~i-~~~~~~~--------~-~~~~~~~~~l~~~~~~~Gv~i~~~~~~g-----~~lr~~ppl~i~~ 405 (421)
T PRK06777 341 CPAIVDIRARGSMVAV-EFNDPQT--------G-KPSPEFTRQYQRQALEEGLLLLSCGVHG-----NVIRFLYPLTIPD 405 (421)
T ss_pred CCCeEEecCceEEEEE-EEecCcc--------C-CccHHHHHHHHHHHHhCCeEEeecCCCC-----CEEEEeCCCCCCH
Confidence 445556788888764 1221210 0 012222 2233567999999987765 27999996 789
Q ss_pred CcHHHHHHHHHHHHH
Q 041151 434 EDMPAIMESFKKFND 448 (463)
Q Consensus 434 e~i~~~~~~l~~~l~ 448 (463)
+++++++++|.+++.
T Consensus 406 ~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 406 AQFSKALNILTRLLA 420 (421)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998874
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=173.13 Aligned_cols=270 Identities=12% Similarity=0.151 Sum_probs=170.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC--------------ceecCCCc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH--------------TTWKRQQI 171 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g--------------~~~~~~~~ 171 (463)
...|++.+|++++ .+ +.+++++| +.++..++. ++ ++||+|+++ ++ +++..- .
T Consensus 56 ~~~le~~lA~l~g------~~-~~v~~~sG-~~ai~~~l~-~l-~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v-~ 124 (390)
T PRK08064 56 REALEDIIAELEG------GT-KGFAFASG-MAAISTAFL-LL-SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFV-D 124 (390)
T ss_pred HHHHHHHHHHHhC------CC-CeEEECCH-HHHHHHHHH-Hh-CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEE-C
Confidence 4688888888875 33 45666666 668888886 55 799999997 33 222000 0
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
..|+ +.+++.+++ ++++|++++|+||||.+.+ +++|.++|+++++++|+|++|..... . .++ .+
T Consensus 125 ~~d~-~~l~~~l~~------~tklV~l~~p~NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~---~--~~~-~~ 188 (390)
T PRK08064 125 MTNL-EEVAQNIKP------NTKLFYVETPSNPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLL---Q--KPL-DL 188 (390)
T ss_pred CCCH-HHHHHhcCC------CceEEEEECCCCCCcEecc---HHHHHHHHHHcCCEEEEECCCCcccc---c--Cch-hh
Confidence 1267 889888876 7999999999999999976 66777788899999999999976432 1 111 11
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
+ ..+++.|+||.++|.+|+..|++++ +++++++.++..+. .++.....+.+.. ++..
T Consensus 189 --------g---~Divv~S~tK~~~G~~~~laG~~v~--~~~~~~~~l~~~~~-~~g~~~~~~~a~l-~~~g-------- 245 (390)
T PRK08064 189 --------G---ADVVLHSATKFLAGHSDVLAGLAVV--KDEELAQKLYFLQN-SFGAVLGVQDCWL-VLRG-------- 245 (390)
T ss_pred --------C---CcEEEeecceeccCCccceeEEEEe--CCHHHHHHHHHHHH-hcCCCCCHHHHHH-HHcc--------
Confidence 1 2478999999986666777888876 56788898888776 3333333333333 2221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-ccc-----------------CCceeEEeeeccCChhhHHHHhhcCCC
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNF-----------------TEGAMYSFPQIRLPPKAIEAAKRAGKV 393 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 393 (463)
++.+..+.++..++...+.+.|++.|.+. +.. ..|+++. +++.
T Consensus 246 ---l~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s---f~~~------------- 306 (390)
T PRK08064 246 ---LKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLS---FTLQ------------- 306 (390)
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEE---EEEC-------------
Confidence 11122344455677777777777664432 111 1233332 2332
Q ss_pred ChHHHHHHHHHhcCe---EeeCCCC------------CCCC------C--CCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 394 PDVFYCLRLLEATGI---STVPGSG------------FGQK------E--GIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 394 ~~~~~~~~ll~~~gI---~v~pg~~------------f~~~------~--~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+.+.+...+...++ .++-|.. +..+ . ..+.+|+|++. |+.+..++.|.+++++.
T Consensus 307 -~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGl--e~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 307 -SEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGL--ENVDDLIADFEQALSYV 383 (390)
T ss_pred -CHHHHHHHHHhCCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHhc
Confidence 12234566677776 4444421 1111 1 14589999995 46777777787777764
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=172.73 Aligned_cols=272 Identities=9% Similarity=0.037 Sum_probs=176.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~~~ 170 (463)
...|++.+|++++ . ...++ +++++.++..++.+++ +|||+|+++ + |+++ ..
T Consensus 65 ~~~le~~lA~l~g------~-~~av~-~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v-- 133 (389)
T PRK05968 65 VRAFEEMLAKLEG------A-EDARG-FASGMAAISSTVLSFV-EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYV-- 133 (389)
T ss_pred HHHHHHHHHHHhC------C-CcEEE-ECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEe--
Confidence 5689999999875 2 23444 4555789999999888 899999996 2 3333 11
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
...|+ +.+++.+ + ++|+|++++|+||++ +..++++|+++|++++++||+|++|+...+. . ++ .
T Consensus 134 d~~d~-~~l~~~i-~------~tklV~ie~pt~~~~---~~~dl~~i~~la~~~gi~vivD~a~a~~~~~--~---p~-~ 196 (389)
T PRK05968 134 DGRDE-EAVAKAL-P------GAKLLYLESPTSWVF---ELQDVAALAALAKRHGVVTMIDNSWASPVFQ--R---PI-T 196 (389)
T ss_pred CCCCH-HHHHHhc-c------cCCEEEEECCCCCCC---cHHHHHHHHHHHHHcCCEEEEECCCcchhcc--C---ch-h
Confidence 12377 8898887 4 689999998777755 4578999999999999999999999865431 1 11 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCC
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
. + -.+++.|+||.+.|..+++.|+++ +++++++++++... .....+++.+..+...|+
T Consensus 197 ~--------g---~Divv~S~tK~l~g~~~~~gG~i~---~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~------ 256 (389)
T PRK05968 197 L--------G---VDLVIHSASKYLGGHSDTVAGVVA---GSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLR------ 256 (389)
T ss_pred c--------C---CcEEEeeccccccCCCCeEEEEEE---ECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccC------
Confidence 1 1 137889999999433346889888 58888888876543 233455555555544443
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CC---------ceeEEeeeccCChhhHHHHhhcCCCChHHH
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF-TE---------GAMYSFPQIRLPPKAIEAAKRAGKVPDVFY 398 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (463)
.+..+.++..++...+.+.|+++|++..+. |. .++.-.+.+++..+. +..++
T Consensus 257 --------tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~----------~~~~f 318 (389)
T PRK05968 257 --------TLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGI----------DVRAF 318 (389)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHH----------HHHHH
Confidence 122344455666778889999888875443 31 122212223432221 13344
Q ss_pred HHHHHHhcCeEeeCCCCCC------------C-C-----C--CCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 399 CLRLLEATGISTVPGSGFG------------Q-K-----E--GIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 399 ~~~ll~~~gI~v~pg~~f~------------~-~-----~--~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+ ..|+..++.+.-|..+. . . . ..+.+|+|++. |+.+.+++.|++++++
T Consensus 319 ~-~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGl--E~~~dl~~dl~~al~~ 386 (389)
T PRK05968 319 A-DALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGL--EGTEALWADLEQALAA 386 (389)
T ss_pred H-HhCCccEEecCCCCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHHHHHHHHHH
Confidence 3 44666677776666554 0 0 0 14589999995 4677888888887764
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=176.15 Aligned_cols=324 Identities=11% Similarity=0.094 Sum_probs=189.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+.+.... ..+...-..+.+.++|+.+.+..... ..+.+++++++++|+..+++.... .....|+.
T Consensus 72 ~p~v~~ai~~q~~~~~----~~~~~~~~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~ 146 (451)
T PRK06918 72 HPKVKEALHKQVDQYI----HTGFNVMMYEPYIELAEKLAALAPGS-FDKKVLFLNSGAEAVENAVKIARKYTKRQGIIS 146 (451)
T ss_pred CHHHHHHHHHHHHhcc----CccccccccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 6789999988887621 11111112345566666665432110 115899999999999999986531 12234444
Q ss_pred c----cCcee-----cC--C------------------------CcccCh-------HHHHHHHHHHHHhcCCceeEEEE
Q 041151 161 L----FHTTW-----KR--Q------------------------QIGVLI-------INDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 161 p----~g~~~-----~~--~------------------------~~~~d~-------~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
- +|... .. . ..+... ++.+++.+.... ...++-+| |
T Consensus 147 ~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAav-i 224 (451)
T PRK06918 147 FSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEV-APETIAAV-V 224 (451)
T ss_pred ECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhc-CCCceEEE-E
Confidence 3 22211 00 0 001100 022333332100 11144554 5
Q ss_pred ECCCCCC-ccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccC
Q 041151 199 INPGNPT-GQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYW 276 (463)
Q Consensus 199 ~~p~NPt-G~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 276 (463)
..|.+.. |.++ +.+.+++|.++|++||+++|+||+|..+.+. +. ..++.. + +.. --+.|+||.+
T Consensus 225 ~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~-g~-~~a~~~----~----~v~---pDi~t~sK~l- 290 (451)
T PRK06918 225 MEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFART-GK-YFAIEH----F----DVV---PDLITVSKSL- 290 (451)
T ss_pred ECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCcc-Cc-eehhHh----c----CCC---CCEEeeehhh-
Confidence 5565554 5544 5556999999999999999999999987652 22 222222 2 211 1145899999
Q ss_pred CCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 277 GECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 277 g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
+ +|+|+||++ +++++.+.+..... .+++.+++.|.++.+.++- ++ .....++.++..+.+.+.
T Consensus 291 ~-~G~pig~v~---~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~-----------i~-~~~~~~~~~~~g~~l~~~ 354 (451)
T PRK06918 291 G-AGVPISGVI---GRKEIMDESAPGELGGTYAGSPLGCAAALAVLDI-----------IE-KENLNDRAIELGKVVMNR 354 (451)
T ss_pred c-CCCccEEEE---EcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHH-----------HH-HCCHHHHHHHHHHHHHHH
Confidence 6 899999999 58888888865443 5788999999998777631 11 011222233333344443
Q ss_pred hhc----CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 356 FNS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 356 L~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
|++ .|.+..+.+.|.++.|..+.-+... .........+...+.++||.+.|+..|+ +++|++++
T Consensus 355 l~~l~~~~~~~~~vrg~G~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~Gvlv~~~~~~~-----~~lrl~p~l 423 (451)
T PRK06918 355 FEEMKNKYNCIGDVRGLGAMCAFELVQDRKTK------EPDKTLTANICKEANKRGLLLLSAGTYG-----NVIRVLMPL 423 (451)
T ss_pred HHHHHhhCCCceeeccceeEEEEEEccCCCcC------CCcHHHHHHHHHHHHHCCeEEeecCCCC-----CEEEEECCC
Confidence 333 3333345567888887543211000 0000012233445678999999987664 37999997
Q ss_pred -CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
.+++++++++++|.++++++.++
T Consensus 424 ~~t~~~id~~l~~l~~~l~~~~~~ 447 (451)
T PRK06918 424 VITDEQLEEGLTIIEESLQACYEK 447 (451)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999887655
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-18 Score=174.26 Aligned_cols=319 Identities=13% Similarity=0.022 Sum_probs=185.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+.+.+. ....+.. ...+.+.++|+.+.+.... -..+.+++++++++|+..+++....-.| .+|+.
T Consensus 51 ~p~v~~a~~~ql~~~--~~~~~~~--~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~ 125 (420)
T TIGR00700 51 HPRVVDAVRTQVAEF--THTCFMV--TPYEGYVALAEKLNRIAPG-SGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVA 125 (420)
T ss_pred CHHHHHHHHHHHHhc--cCccccc--cCChHHHHHHHHHHHhCCC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEE
Confidence 678999998888763 1111111 1123344555555433110 1125899999999999999986531123 34444
Q ss_pred c----cCcee-----cC------CCc---------------------------ccChHHHHHHHHHHHHhcCCceeEEEE
Q 041151 161 L----FHTTW-----KR------QQI---------------------------GVLIINDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 161 p----~g~~~-----~~------~~~---------------------------~~d~~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
- +|... .. ..+ .-++ +.+++.+... ....++.+|++
T Consensus 126 ~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~iAavi~ 203 (420)
T TIGR00700 126 FDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGEL-AAARAIFVID-VGANNVAALVI 203 (420)
T ss_pred ECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHH-HHHHHHHHhh-cCCCcEEEEEE
Confidence 3 22111 00 000 0013 4566655311 11226778777
Q ss_pred ECCCCCCccCCCHH-HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 199 INPGNPTGQCLSEA-NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 199 ~~p~NPtG~~~s~~-~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
.--..-+|.+++.+ .+++|.++|++||+++|+||+|..+.+. +. +..+ ..+ + ....+.+|||.+ +
T Consensus 204 Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~-g~----~~a~-~~~----~---~~pDi~~lsK~l-~ 269 (420)
T TIGR00700 204 EPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFART-GA----MFAC-EHE----G---PEPDLITTAKSL-A 269 (420)
T ss_pred CCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc-ch----hHHH-hhc----C---CCCCEEEeeccc-c
Confidence 64455578766545 4999999999999999999999987552 21 1111 111 1 122345699999 6
Q ss_pred CCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041151 278 ECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 278 ~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 356 (463)
+|+|+||++ +++++++.+..... .+++.+++.|.++.+.++-.. .+ .+.+...++.+.++++ +.+..
T Consensus 270 -~G~pig~v~---~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~--~~---~~~~~~~~~g~~l~~~---L~~l~ 337 (420)
T TIGR00700 270 -DGLPLSGVT---GRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIE--SE---GLIERARQIGRLVTDR---LTTLK 337 (420)
T ss_pred -CCcceEEEE---ecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHH--hc---cHHHHHHHHHHHHHHH---HHHHH
Confidence 899999999 58888888864432 578889999999977763100 00 1112222222222222 22222
Q ss_pred hcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh---HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C
Q 041151 357 NSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD---VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P 431 (463)
Q Consensus 357 ~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~ 431 (463)
..+|.+..+.+. |.++|+.+.-+.. ..++ ...+...+.++||.+.|+..|+ +++||+++ .
T Consensus 338 ~~~~~~~~vrg~-G~~~~i~~~~~~~---------~~~~~~~~~~l~~~~~~~Gv~i~p~~~f~-----~~lRl~p~l~~ 402 (420)
T TIGR00700 338 AVDPRIGDVRGL-GAMIAVELVDPGT---------TEPDAGLAERIATAAHAAGLLLLTCGMFG-----NIIRFLPPLTI 402 (420)
T ss_pred hhCCCEEEeecc-ceEEEEEEecCCC---------CCccHHHHHHHHHHHHHCCeEEeccCCCC-----CEEEEECCCCc
Confidence 234444445555 4555644421100 0011 1223344578999999988775 37999987 6
Q ss_pred CcCcHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFND 448 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~ 448 (463)
+++++++++++|.+++.
T Consensus 403 ~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 403 GDELLSEGLDILCAILA 419 (420)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 88999999999998874
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-18 Score=167.78 Aligned_cols=306 Identities=14% Similarity=0.135 Sum_probs=182.9
Q ss_pred cHHHHHHHHHHhhhcC-------CCCCccC----CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH
Q 041151 82 PADAIARAKHYLSLTS-------GGLGAYS----DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV 150 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~-------~~~~~Y~----~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l 150 (463)
++.+.+++.+++..+. ....+.. ...-+.++|+.+|++++ . ++.+++++|. .++..++..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~------~-~~~l~~~sG~-~a~~~~~~~~ 91 (370)
T PRK05937 20 SDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG------A-PEAFIVPSGY-MANLGLCAHL 91 (370)
T ss_pred CHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-CeEEEECChH-HHHHHHHHHh
Confidence 6777777777776641 1111222 22234678888888875 2 2346666665 5565666666
Q ss_pred hcCCCCEEEEc---cCc-----ee-c--CCC-cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHH
Q 041151 151 IRGEGDGVVLL---FHT-----TW-K--RQQ-IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 218 (463)
Q Consensus 151 ~~~~gd~Vlvp---~g~-----~~-~--~~~-~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~ 218 (463)
. ++||.|++. ++. .. . ... ...|+ +.|++.++...+..+++.+|++++++|+||.+.+ +++|.
T Consensus 92 ~-~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p---l~eI~ 166 (370)
T PRK05937 92 S-SVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDL-DHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP---LEQII 166 (370)
T ss_pred C-CCCCEEEEEhhhhHHHHHHHHHcCCceEEecCCCH-HHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC---HHHHH
Confidence 5 788999885 111 11 0 011 12577 9999999854222224567778899999999998 66777
Q ss_pred HHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 219 RFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
++|+++++++++|++|+...++. .. ..+. ..+ .-.+..+++.||||.+ |..| .|.+ ..++..+.
T Consensus 167 ~l~~~~~~~livDea~~~G~~g~-~g-~g~~---~~~----~~~~~~~~~~tlsK~~-g~~G--~~vl----~~~~~~~~ 230 (370)
T PRK05937 167 ALSKKYHAHLIVDEAHAMGIFGD-DG-KGFC---HSL----GYENFYAVLVTYSKAL-GSMG--AALL----SSSEVKQD 230 (370)
T ss_pred HHHHHcCCEEEEECCccccccCC-CC-CchH---Hhh----CCCCCcEEEEechhhh-hcCc--eEEE----cCHHHHHH
Confidence 88889999999999999755521 11 1111 111 1111236789999998 7767 3433 35666666
Q ss_pred HHhhh-h--hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCcccccCCceeEEe
Q 041151 299 IYKIA-S--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC-RNVVCNFTEGAMYSF 374 (463)
Q Consensus 299 l~~~~-~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-pg~~~~~~~g~~~~~ 374 (463)
+.... . ...+.+.+...++.++++ ......+..++++++.++++.+.|... ++. ...++
T Consensus 231 ~~~~~~~~~~s~~~~~~~~~a~~aal~----------~l~~~~~~~~~~l~~l~~~l~~~l~~~~~~~-------~~~i~ 293 (370)
T PRK05937 231 LMLNSPPLRYSTGLPPHLLISIQVAYD----------FLSQEGELARKQLFRLKEYFAQKFSSAAPGC-------VQPIF 293 (370)
T ss_pred HHHhCCCCeecCCCCHHHHHHHHHHHH----------HHHhCcHHHHHHHHHHHHHHHHhcCCCCCCC-------EEEEE
Confidence 55322 2 233445555554444442 111112335566777777787777542 111 01122
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+ +.. ..+.+...|.++||.+.... . +..+++|+|+. ++++|++++++.|+++++++.+
T Consensus 294 --~--~~~------------~~~~~~~~L~~~gi~v~~~~--~--~~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~ 353 (370)
T PRK05937 294 --L--PGI------------SEQELYSKLVETGIRVGVVC--F--PTGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK 353 (370)
T ss_pred --e--CCh------------hHHHHHHHHHHCCeeEEeeC--C--CCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 2 211 22345566788899886422 1 12347999999 8999999999999998877644
Q ss_pred H
Q 041151 453 Q 453 (463)
Q Consensus 453 ~ 453 (463)
.
T Consensus 354 ~ 354 (370)
T PRK05937 354 N 354 (370)
T ss_pred C
Confidence 3
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=167.68 Aligned_cols=307 Identities=10% Similarity=0.028 Sum_probs=188.0
Q ss_pred cHHHHHHHHHHh-hhcCC---CCCccCCCCCCHHHHH----HHHHHHHHhcCCCCCCCcE-EEcCCcHHHHHHHHHHHhc
Q 041151 82 PADAIARAKHYL-SLTSG---GLGAYSDSRGIPGVRK----EVAEFIERRDGYPSDPELI-FLTDGASKGVMQTLNCVIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~-~~~~~---~~~~Y~~~~g~~~lr~----~ia~~~~~~~g~~~~~~~i-~~t~G~~~al~~~~~~l~~ 152 (463)
++.+++++...+ ..++. ....|+....+.+|.+ .++++++ .+.. +.+++++.|+..++.+++
T Consensus 41 ~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g--------~~~alv~~~SG~~A~~~~l~al~- 111 (416)
T PRK13034 41 SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFG--------CDYANVQPHSGSQANGAVYLALL- 111 (416)
T ss_pred CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhC--------CCceEEecCCcHHHHHHHHHHhc-
Confidence 889999998875 44321 1111111223456666 6666664 3345 446778999999999998
Q ss_pred CCCCEEEEc---cCc------ee--------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 153 GEGDGVVLL---FHT------TW--------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 153 ~~gd~Vlvp---~g~------~~--------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
+|||+|+++ ++. ++ ....+.+|+ +.+++.++.. ++|+|++..+.+ |...
T Consensus 112 ~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~-----~~klVi~~~~~~--g~~~ 183 (416)
T PRK13034 112 KPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDY-DEVEELAKEH-----KPKLIIAGFSAY--PREL 183 (416)
T ss_pred CCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCH-HHHHHHHhhc-----CCeEEEECCCcc--cccc
Confidence 999999997 222 21 112455899 9999988653 678887766554 4554
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+ +.+|.++|+++|+++|+|++|+...+..+....++ . .-.++++|+||++. |-..|+++.
T Consensus 184 d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~-----------~--~~Di~~~s~~K~l~---g~~GG~v~~- 243 (416)
T PRK13034 184 D---FARFREIADEVGALLMVDMAHIAGLVAAGEHPNPF-----------P--HAHVVTTTTHKTLR---GPRGGMILT- 243 (416)
T ss_pred C---HHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCC-----------C--CceEEEEeCcccCC---CCCCeEEEE-
Confidence 4 77777789999999999999987665322211111 1 13488999999983 333577764
Q ss_pred CCChhHHHHHHhhhhhc--ccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 041151 290 NIPPKTVDEIYKIASIA--LSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSCRNVVCNF 366 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~ 366 (463)
.++.+.+.++.....+ .+.......++...+. +.. .+..+.++++.++.++|.+.|.+. |+.+..
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~----------~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~ 311 (416)
T PRK13034 244 -NDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFG----------EALQPEFKTYAKQVIANAQALAEVLKER-GYDLVS 311 (416)
T ss_pred -CcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHH----------HHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEecc
Confidence 3455555555433212 1122222222222221 111 112345788999999999999988 888764
Q ss_pred C-CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC---CCCCCCCcEEEEEec------CCcCcH
Q 041151 367 T-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG---FGQKEGIFHLRTTIL------PAEEDM 436 (463)
Q Consensus 367 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~---f~~~~~~~~lRis~~------~~~e~i 436 (463)
+ ..+...++.+..+. .+...+.+.|+++||.+.+-.. ...+.....+|+++. .+++|+
T Consensus 312 ~~~~t~i~~v~~~~~~------------~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di 379 (416)
T PRK13034 312 GGTDNHLLLVDLRPKG------------LSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEF 379 (416)
T ss_pred CCCCCcEEEEEcCCCC------------CCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHH
Confidence 3 22334443344221 1334455678889999975211 111112346999966 357999
Q ss_pred HHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDE 449 (463)
Q Consensus 437 ~~~~~~l~~~l~~ 449 (463)
+++++.|++++.+
T Consensus 380 ~~l~~~l~~~~~~ 392 (416)
T PRK13034 380 REIANWILDVLDD 392 (416)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988763
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-18 Score=172.48 Aligned_cols=306 Identities=13% Similarity=0.123 Sum_probs=192.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--------G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~ 153 (463)
++.+++++.+.+.........+ ...-+.+|.+.+++++ | .+.+++++++++++..+++.... .
T Consensus 55 ~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~----~----~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~ 125 (401)
T TIGR01885 55 HPKIVKALTEQAQKLTLSSRAF-YNDVFGEFAEYVTKLF----G----YDKVLPMNTGAEAVETAIKLARKWGYKVKGIP 125 (401)
T ss_pred CHHHHHHHHHHHHhcccccccc-CCHHHHHHHHHHHhhc----C----CCEEEEeCccHHHHHHHHHHHHHHhhhhcCCC
Confidence 7889999988877632111111 1112234444444443 2 36899999999999999998520 1
Q ss_pred CCC-EEEEc---cCcee------cC-----CCc-----------ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 154 EGD-GVVLL---FHTTW------KR-----QQI-----------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 154 ~gd-~Vlvp---~g~~~------~~-----~~~-----------~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
+|+ .|+.. +++.. .. ..+ -.|+ +.|++.++.. +.++.+|++..+++++|.
T Consensus 126 ~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~---~~~~~avi~E~v~~~~G~ 201 (401)
T TIGR01885 126 ENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNL-EALEEALEDH---GPNVCAFIVEPIQGEAGV 201 (401)
T ss_pred CCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCH-HHHHHHHHhc---CCCEEEEEEeCccCCCCC
Confidence 344 44444 23221 00 001 1167 9999988642 226778888888999999
Q ss_pred CCCHH-HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 208 CLSEA-NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 208 ~~s~~-~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+.+.+ .+++|.++|++|++++|+||+|..+.++ +. .... .. .+. .. .++ ++||.+ +..++|+||+
T Consensus 202 ~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~-G~-~~~~-~~-~~~----~~--di~---~~gK~l-~~g~~~ig~v 267 (401)
T TIGR01885 202 VVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRT-GK-LLCV-DH-ENV----KP--DIV---LLGKAL-SGGVYPVSAV 267 (401)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc-ch-hhHH-hh-cCC----CC--CEE---Eeeccc-cCCCCCcEEE
Confidence 88644 6999999999999999999999765432 21 1111 11 011 11 122 478999 6666999999
Q ss_pred EecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-Cc-c
Q 041151 287 EMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR-NV-V 363 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p-g~-~ 363 (463)
+ +++++++.+.... ..+++.+++.+.++.++|+ .... ..+.++.+++.+++.+.|++++ ++ .
T Consensus 268 ~---~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~-----------~i~~-~~l~~~~~~~~~~~~~~L~~l~~~~~~ 332 (401)
T TIGR01885 268 L---ADDDVMLTIKPGEHGSTYGGNPLACAVAVAALE-----------VLEE-EKLAENAEKLGEIFRDQLKKLPKPIIT 332 (401)
T ss_pred E---EcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHhccCCcee
Confidence 9 5888888876532 2456678888888888764 2221 1345567777888888898872 22 2
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
...+.|.++.+ .++.+... .+..+++ ..|.++||.+.|+. ...+||+.. .++++++++++
T Consensus 333 ~~~g~g~~~~i-~~~~~~~~---------~~~~~l~-~~l~~~Gv~v~~~~-------~~~lRi~p~l~~t~~~i~~~l~ 394 (401)
T TIGR01885 333 EVRGRGLLNAI-VIDESKTG---------RTAWDLC-LKLKEKGLLAKPTH-------GNIIRLAPPLVITEEQLDEGLE 394 (401)
T ss_pred EEeecCeeEEE-EeccCcch---------hHHHHHH-HHHHhCCEEEEecC-------CCEEEEeCCccCCHHHHHHHHH
Confidence 23355666553 13322100 0133444 45667899998742 247999987 88999999999
Q ss_pred HHHHHH
Q 041151 442 SFKKFN 447 (463)
Q Consensus 442 ~l~~~l 447 (463)
+|++++
T Consensus 395 ~l~~~l 400 (401)
T TIGR01885 395 IIKKVI 400 (401)
T ss_pred HHHHHh
Confidence 998875
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=152.36 Aligned_cols=310 Identities=13% Similarity=0.121 Sum_probs=225.6
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEE--EcCCcHHHHHHHHHHHhc-CCCCEEEEc-------------
Q 041151 98 GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIF--LTDGASKGVMQTLNCVIR-GEGDGVVLL------------- 161 (463)
Q Consensus 98 ~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~~~~l~~-~~gd~Vlvp------------- 161 (463)
...+.|-|..|.+.++++.++.+-......+..++++ -+-+++.|+......+.+ =+..+|.+.
T Consensus 65 s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~ 144 (410)
T KOG1412|consen 65 SLNHEYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEK 144 (410)
T ss_pred hccchhccccCchhhhhhhHHHhcCCCchhhhhccccceeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHH
Confidence 4568999999999999999988754333334555543 344667788877766541 134557774
Q ss_pred cCce-e------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 162 FHTT-W------KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 162 ~g~~-~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
.|.. + ..+...+|+ +.+...|+.. |.-..+++. ..|||||.-.++|++.+|+++.++.+.+.+.|-+
T Consensus 145 aGf~tv~~Y~yWd~~~k~~d~-e~~Lsdl~~A----Pe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiA 219 (410)
T KOG1412|consen 145 AGFTTVATYPYWDAENKCVDL-EGFLSDLESA----PEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIA 219 (410)
T ss_pred cCCceeeeeeeecCCCceecH-HHHHHHHhhC----CCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehh
Confidence 5522 2 556677899 9998888873 223444555 5599999999999999999999999999999999
Q ss_pred ccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh----h-hhccc
Q 041151 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI----A-SIALS 308 (463)
Q Consensus 234 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~-~~~~~ 308 (463)
|+.+.- +.+.....++---. .+...++++-||+|.| |+.+-|+|.+.+--.++..+..+... . ...+.
T Consensus 220 YQGfAS--GD~~~DawAiR~fV----~~g~e~fv~QSFaKNf-GlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SN 292 (410)
T KOG1412|consen 220 YQGFAS--GDLDADAWAIRYFV----EQGFELFVCQSFAKNF-GLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSN 292 (410)
T ss_pred hccccc--CCccccHHHHHHHH----hcCCeEEEEhhhhhhc-ccccccccceEEEecChhHHHHHHHHHHHHHhhccCC
Confidence 999754 22222332221111 2223589999999999 99999999885543466666655432 2 23567
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CC-cccccCCceeEEeeeccCChhhHH
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RN-VVCNFTEGAMYSFPQIRLPPKAIE 385 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg-~~~~~~~g~~~~~~~~~~~~~~~~ 385 (463)
++.....++...|+.+ +..++|...++.+..++++.|..|++.|..+ || |.-+.-+.|+|.+-.+.
T Consensus 293 PPAyGArIV~kvL~tP----~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLt------- 361 (410)
T KOG1412|consen 293 PPAYGARIVHKVLSTP----ELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLT------- 361 (410)
T ss_pred CcchhhHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCC-------
Confidence 7788888999999864 4666777778889999999999999999886 65 66667788999984333
Q ss_pred HHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 041151 386 AAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 386 ~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~ 451 (463)
...+..+.++++|++.+ .| ||+++ .+...++...++|.+.++...
T Consensus 362 ----------p~qV~~li~~h~vyLl~-------~G----RInisGLN~~NveyVAkAIde~Vr~~~ 407 (410)
T KOG1412|consen 362 ----------PAQVDHLIENHKVYLLS-------DG----RINISGLNMKNVEYVAKAIDETVRAIK 407 (410)
T ss_pred ----------HHHHHHHHHhceEEEec-------CC----cEeeeccccccHHHHHHHHHHHHHhhc
Confidence 23467888999999987 34 99999 888999999999998887653
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.6e-18 Score=167.53 Aligned_cols=207 Identities=12% Similarity=0.136 Sum_probs=143.3
Q ss_pred CccCCCCCC---HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC-----------
Q 041151 101 GAYSDSRGI---PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH----------- 163 (463)
Q Consensus 101 ~~Y~~~~g~---~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g----------- 163 (463)
..|+. .|. ..|++++|++.+ .+++++++|+++|+..++.+++ ++||+|+++ ++
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~g--------~~~~~~~~sG~~Ai~~al~all-~~GD~Vl~~~~~y~~t~~~~~~~~~ 111 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELEG--------GAGCYLYPSGLAAVTNSILAFV-KAGDHVLMVDSAYEPTRYFCDIVLK 111 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHhC--------CCcEEEECcHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHHH
Confidence 44663 344 589999998864 4689999999999999999998 999999986 22
Q ss_pred ---ceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 164 ---TTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 164 ---~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
+++...+ .-+. +.+++.+++ ++|+|++++|+||+|.. .++++|+++|+++|+++|+|++|+.....
T Consensus 112 ~~gi~v~~~d-~~~~-e~l~~~i~~------~tklV~lesp~Np~g~~---~dl~~I~~la~~~g~~livD~t~a~g~~~ 180 (377)
T TIGR01324 112 RMGVDITYYD-PLIG-EDIATLIQP------NTKVLFLEAPSSITFEI---QDIPAIAKAARNPGIVIMIDNTWAAGLLF 180 (377)
T ss_pred hcCcEEEEEC-CCCH-HHHHHhcCC------CceEEEEECCCCCCCcH---HHHHHHHHHHHHcCCEEEEECCCcccccc
Confidence 2210000 1133 677777776 89999999999999877 46889999999999999999999864331
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHH
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGL 319 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~ 319 (463)
. ++ . .+-.|+++|++|+++|.++...|+++ ++++.++.+..... .+...++.....+..
T Consensus 181 --~---pl-~-----------~gaDivv~S~tK~l~G~~d~~gG~v~---~~~~~~~~l~~~~~~~G~~l~p~~a~~~~r 240 (377)
T TIGR01324 181 --K---PL-E-----------HGVDISIQAGTKYLVGHSDIMIGTVV---ANARTWDQLREHSYLMGQMVDADDAYTTLR 240 (377)
T ss_pred --C---cc-c-----------cCceEEEecCceeccCCCCceEEEEE---eCHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence 1 11 1 12348999999999666678899888 57777777765443 333334433322322
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 320 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
.+ +.+.-+.++..++...+.+.|++.|.+
T Consensus 241 gl--------------~tl~~R~~~~~~~a~~la~~L~~~p~v 269 (377)
T TIGR01324 241 GL--------------RTLGVRLKQHQESSLAIAKWLSEQPEV 269 (377)
T ss_pred hh--------------hhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 22 223334556677777788888876554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.9e-18 Score=170.21 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=114.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cC
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FH 163 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g 163 (463)
..|+.+. ..+|++.+|++++ .+..++++++++++..++.+++ ++||+|+++ .|
T Consensus 52 sr~~~p~-~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~~l~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G 121 (418)
T TIGR01326 52 SRLMNPT-TDVLEQRIAALEG--------GVAALAVASGQAAITYAILNLA-QAGDNIVSSSYLYGGTYNLFKHTLKRLG 121 (418)
T ss_pred ECCCChh-HHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHHHHHcC
Confidence 3444433 5788888888874 2567888888999999999998 899999986 23
Q ss_pred cee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCC
Q 041151 164 TTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 164 ~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~ 242 (463)
+++ ..+. .|+ +.+++++++ ++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|+...+
T Consensus 122 ~~v~~v~~--~d~-~~l~~~l~~------~t~~V~le~p~NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~--- 186 (418)
T TIGR01326 122 IEVRFVDP--DDP-EEFEKAIDE------NTKAVFAETIGNPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYL--- 186 (418)
T ss_pred cEEEEECC--CCH-HHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhc---
Confidence 333 1111 277 999999877 7999999999999999987 67888889999999999999974322
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
..++ . .+..|++.|+||++ +.+|+|+||+++
T Consensus 187 --~~~l-----------~-~g~Divv~S~sK~l-~g~G~~lGg~v~ 217 (418)
T TIGR01326 187 --CRPI-----------D-HGADIVVHSATKYI-GGHGTAIGGVIV 217 (418)
T ss_pred --CCch-----------h-cCCeEEEECccccc-cCCccceEEEEE
Confidence 1111 1 12468999999999 889999999996
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=167.26 Aligned_cols=177 Identities=15% Similarity=0.243 Sum_probs=129.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++..++++.+.+.+ . .+ .|..++++++++++.+.. ..+++++|+|+++++..++.++ + +|||+|++
T Consensus 10 ~~~e~~a~~~~~~~---~--~~---~~~g~~~~~~e~~la~~~----g~~~~v~~~sgt~aL~~~l~al~~-~pGd~Viv 76 (376)
T TIGR02379 10 TGQELEYIAEAISE---G--KL---SGDGPFSRRCETWLENRT----GTKKALLTPSCTAALEMAALLLDI-QPGDEVIM 76 (376)
T ss_pred CHHHHHHHHHHHHc---C--Cc---cCCcHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHcCC-CCcCEEEE
Confidence 67778888887765 1 12 122356777777776653 4578999999999999999987 6 89999999
Q ss_pred c-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
| .|+++ ..+.+.+|+ +.+++.+++ ++|+|+ |+||+|...+ +++|.++|+
T Consensus 77 ~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d~-~~le~~i~~------~tk~Ii---p~~~~G~~~d---~~~I~~la~ 143 (376)
T TIGR02379 77 PSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDE-TLIESAITH------RTKAIV---PVHYAGVACD---MDTIMALAN 143 (376)
T ss_pred CCCCcHHHHHHHHHcCCEEEEEecCCCcCCCCH-HHHHHhcCc------CceEEE---EeCCCCCccC---HHHHHHHHH
Confidence 8 67666 334578999 999999887 799986 6778999887 667888889
Q ss_pred hCCeEEEecccccccc-cCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 223 QENLVLLGDEVYQQNI-YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
++|++||+|++|+.+. | ++.+..++ . .+.+.|| +|.+ . +|.++|++++ .++++.+++
T Consensus 144 ~~~i~vIeDaa~~~g~~~-~~~~~g~~-----------~----~~~~fSf~~~K~l-~-~g~~gG~v~~--~~~~~~~~~ 203 (376)
T TIGR02379 144 KHQLFVIEDAAQGVMSTY-KGRALGSI-----------G----HLGTFSFHETKNY-T-SGGEGGALLI--NDQAFIERA 203 (376)
T ss_pred HCCCEEEEECccccCCcc-CCcccCCC-----------C----CEEEEeCCCCCcC-c-ccCCceEEEE--CCHHHHHHH
Confidence 9999999999998764 4 22222221 1 1223333 2777 3 6778999987 578899998
Q ss_pred Hhhhh
Q 041151 300 YKIAS 304 (463)
Q Consensus 300 ~~~~~ 304 (463)
+.++.
T Consensus 204 ~~~~~ 208 (376)
T TIGR02379 204 EIIRE 208 (376)
T ss_pred HHHHH
Confidence 87764
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=165.92 Aligned_cols=278 Identities=11% Similarity=0.126 Sum_probs=174.9
Q ss_pred CccCCCCC--CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c-------------
Q 041151 101 GAYSDSRG--IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F------------- 162 (463)
Q Consensus 101 ~~Y~~~~g--~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~------------- 162 (463)
..|+...+ ..+|++.++++++ .++++++++++.++..++. ++ ++||+|+++ +
T Consensus 39 ~~Y~r~~~p~~~~le~~la~l~g--------~~~~l~~~sG~~al~~~l~-ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~ 108 (378)
T TIGR01329 39 YDYTRSGNPTRTALESLLAKLDK--------ADRAFAFSSGMAALDVITR-LL-NNGDEIIAGDDLYGGTDRLLTQVVPR 108 (378)
T ss_pred CccCCCCChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHH-Hh-CCCCEEEEcCCCchHHHHHHHHHHHH
Confidence 45664311 3455566665543 2566666767789988776 66 899999996 2
Q ss_pred -Ccee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 163 -HTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 163 -g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
|+++ ..+ ..|+ +.+++++++ ++|+|++++|+||||.+.+ +++|+++|+++|+++|+|++|.....
T Consensus 109 ~G~~v~~vd--~~d~-~~le~~i~~------~tklv~le~psnptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~~- 175 (378)
T TIGR01329 109 SGVVVVHVD--TTDL-DKVKAALGP------KTKLVLLESPTNPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPLL- 175 (378)
T ss_pred cCcEEEEeC--CCCH-HHHHHhcCc------CceEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCccccc-
Confidence 4444 111 1378 999999876 8999999999999999987 88888899999999999999864321
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHH
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGL 319 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~ 319 (463)
..++ .+ . -.++++|++|+++|..+++.|++++ .++++.+++...+. ...+.++.....+..
T Consensus 176 ----~~~l-~~--------g---~Di~v~S~tK~l~G~~~~~~G~v~~--~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~ 237 (378)
T TIGR01329 176 ----CNPL-EL--------G---ADIVYHSATKFLAGHSDVMAGVLAV--KGEEIAKKVYFLQNSTGSGLAPFDCWLLLR 237 (378)
T ss_pred ----CChh-hc--------C---CcEEEEecceeccCCccceeEEEEe--CcHHHHHHHHHHHHhcCCcCCHHHHHHHHc
Confidence 1122 11 1 1389999999986556688999986 46666677776655 334444443333222
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-cc-----------------CCceeEEeeeccCCh
Q 041151 320 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NF-----------------TEGAMYSFPQIRLPP 381 (463)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~-----------------~~g~~~~~~~~~~~~ 381 (463)
.++ .+..+.++-.++...+.+.|++.|.+.. .. ..|+++.+ .+ .
T Consensus 238 ~l~--------------tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf---~~-~ 299 (378)
T TIGR01329 238 GIK--------------TLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSF---ET-G 299 (378)
T ss_pred cCC--------------CHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEE---EE-C
Confidence 222 2223344456666666667766544321 11 12334433 33 1
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC------------C------C--CCcEEEEEecCCcCcHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ------------K------E--GIFHLRTTILPAEEDMPAIME 441 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~------------~------~--~~~~lRis~~~~~e~i~~~~~ 441 (463)
+. ....+++ ..|+..++.++.|..... . . ..+.+|||++. |+.+.+++
T Consensus 300 ~~---------~~~~~~~-~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl--E~~~dl~~ 367 (378)
T TIGR01329 300 SV---------ALSKRLV-EATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVGI--EDVDDLIS 367 (378)
T ss_pred CH---------HHHHHHH-HhCcCcccccCCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecc--CCHHHHHH
Confidence 11 0123443 445777787877765431 0 0 13589999996 47888888
Q ss_pred HHHHHHHH
Q 041151 442 SFKKFNDE 449 (463)
Q Consensus 442 ~l~~~l~~ 449 (463)
.|.+++++
T Consensus 368 dl~~al~~ 375 (378)
T TIGR01329 368 DLDIAFVT 375 (378)
T ss_pred HHHHHHHh
Confidence 88888864
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-18 Score=156.80 Aligned_cols=368 Identities=13% Similarity=0.131 Sum_probs=253.2
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhc-ccceeccCCC-CcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEG-KKIIFTNVGN-PHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
+..+.++..++..+...|.+....++++. ..-|||++|. -+..|.+. + -+.+.
T Consensus 22 ~~~~s~~s~V~maPpDpILGVTeAfk~D~n~~KiNLgvGaYRdd~gKp~---------------------v----L~~Vr 76 (427)
T KOG1411|consen 22 ARASSWWSHVEMAPPDPILGVTEAFKKDPNPKKINLGVGAYRDDNGKPY---------------------V----LPSVR 76 (427)
T ss_pred ccccchhhcCCCCCCCCcccHHHHHhcCCCcceeeecccceecCCCCee---------------------e----eHHHH
Confidence 34444555555555556666666666653 4479999995 33322211 1 34565
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEc--CCcHHHHHHHHHHHhc-CCCCEEEEc--
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLT--DGASKGVMQTLNCVIR-GEGDGVVLL-- 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t--~G~~~al~~~~~~l~~-~~gd~Vlvp-- 161 (463)
+|-.+.+.. .....|-|..|.+++.+..+++.-....-.+..++|+.+ -+++.++......+.+ -++..|.+|
T Consensus 77 kAE~ql~~~--~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~P 154 (427)
T KOG1411|consen 77 KAEQQLASL--SLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDP 154 (427)
T ss_pred HHHHHHhhh--cccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCC
Confidence 555554442 355799999999999999999974321112344455543 3556666655554431 578888887
Q ss_pred -----------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE--CCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 -----------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVII--NPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 -----------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~--~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+|..+ .....++|+ +.+.+.+.+. ....+++. ..|||||+-.+.|++++|.++.+
T Consensus 155 TWgNh~~if~~ag~~~~~yrYyd~~t~gld~-~g~ledl~~~-----p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~ 228 (427)
T KOG1411|consen 155 TWGNHKNIFKDAGLPVKFYRYYDPKTRGLDF-KGMLEDLGEA-----PEGSIILLHACAHNPTGVDPTKEQWEKISDLIK 228 (427)
T ss_pred cccccCccccccCcceeeeeeccccccccch-HHHHHHHhcC-----CCCcEEEeehhhcCCCCCCccHHHHHHHHHHhh
Confidence 44444 445678899 8888877764 23344444 66999999999999999999999
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh-
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK- 301 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~- 301 (463)
+.+.+.+.|.+|+.|.-+ ........+---. .+..+++++-||.|.+ |+.|-|+|.+.+.+.+++...++..
T Consensus 229 ~k~~~pffDmAYQGfaSG--~~d~DA~avR~F~----~~g~~~~laQSyAKNM-GLYgERvGa~svvc~~ad~A~rV~SQ 301 (427)
T KOG1411|consen 229 EKNLLPFFDMAYQGFASG--DLDKDAQAVRLFV----EDGHEILLAQSYAKNM-GLYGERVGALSVVCKDADEAKRVESQ 301 (427)
T ss_pred hccccchhhhhhcccccC--CchhhHHHHHHHH----HcCCceEeehhhhhhc-chhhhccceeEEEecCHHHHHHHHHH
Confidence 999999999999987542 1111221110011 2334789999999999 9999999999665567766666543
Q ss_pred ---h-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CC-cccccCCceeEEe
Q 041151 302 ---I-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RN-VVCNFTEGAMYSF 374 (463)
Q Consensus 302 ---~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg-~~~~~~~g~~~~~ 374 (463)
+ +...++++.....++..+|+++ ..+.+|..+.+.+..++...|..|.+.|+.. ++ |..+..+-|+|.+
T Consensus 302 lk~liRpmYSnPP~hGArIv~~Il~d~----~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~f 377 (427)
T KOG1411|consen 302 LKILIRPMYSNPPLHGARIVATILSDP----DLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCF 377 (427)
T ss_pred HHHHhcccccCCCccchhhhhhccCCh----HHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeee
Confidence 2 2356777777888888888754 5677888889999999999999999999874 33 5556778899998
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHH
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~ 448 (463)
-.+. .+.+..+.+++.|++.. .| |||++ .+...+..+.++|.++.+
T Consensus 378 Tgl~-----------------peQv~~l~ke~~iYmT~-------dG----RiS~aG~ss~nV~yLa~aih~vtk 424 (427)
T KOG1411|consen 378 TGLN-----------------PEQVDWLTKEYHIYLTK-------DG----RISMAGLSSSNVPYLADAIHAVTK 424 (427)
T ss_pred cCCC-----------------HHHHHHHHhhheeeecc-------Cc----eEeeccccccCCcccchhhHhHhc
Confidence 4332 33467788899998854 23 99999 777888888888877654
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-18 Score=167.51 Aligned_cols=289 Identities=11% Similarity=0.101 Sum_probs=181.6
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEEc----
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVLL---- 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlvp---- 161 (463)
+++.+.+.+ .. |.......++++.++++++ .+++++++|+++++..++.++ . .+||+|+++
T Consensus 3 ~~~~~~~~~---~~--~~~~~~~~~~~~~la~~~~--------~~~~~~~~sgt~al~~~l~~l~~-~~gd~vl~~~~~~ 68 (352)
T cd00616 3 EAVEEVLDS---GW--LTLGPKVREFEKAFAEYLG--------VKYAVAVSSGTAALHLALRALGI-GPGDEVIVPSFTF 68 (352)
T ss_pred HHHHHHHHc---CC--ccCCHHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCC-CCCCEEEeCCcch
Confidence 345555554 22 2223356899999999985 356788888899999999998 5 799999998
Q ss_pred ---------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 162 ---------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 162 ---------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
.|.++ ....+.+|+ +.+++.+++ ++++|++++ |+|...+ +++|.++|++++++
T Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~---~~G~~~~---~~~i~~l~~~~~i~ 135 (352)
T cd00616 69 VATANAILLLGATPVFVDIDPDTYNIDP-ELIEAAITP------RTKAIIPVH---LYGNPAD---MDAIMAIAKRHGLP 135 (352)
T ss_pred HHHHHHHHHcCCeEEEEecCCCcCCcCH-HHHHHhcCc------CCeEEEEEC---CCCCcCC---HHHHHHHHHHcCCe
Confidence 56665 222678899 999998865 799998764 6898876 66777788899999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHHhhhhh
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI 305 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~ 305 (463)
+|+|++|+......+. .+ +.. ..+.+.|++ |.+ + +.+.|++++ .++++.+++......
T Consensus 136 li~D~a~~~g~~~~~~---~~-----------~~~-~d~~~~S~~~~K~~-~--~~~gg~~~~--~~~~~~~~~~~~~~~ 195 (352)
T cd00616 136 VIEDAAQALGATYKGR---KV-----------GTF-GDAGAFSFHPTKNL-T--TGEGGAVVT--NDEELAERARLLRNH 195 (352)
T ss_pred EEEECCCCCCCeECCE---Ec-----------ccC-cceeEEcCCCCCCC-c--ccCceEEEE--CCHHHHHHHHHHHHc
Confidence 9999999854321111 11 111 125667766 877 3 445788875 456888877655321
Q ss_pred ccc-------------CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCc---
Q 041151 306 ALS-------------PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEG--- 369 (463)
Q Consensus 306 ~~~-------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g--- 369 (463)
... ...+....++..+ ..+..+++..++.+++.+++.+.|.+++|+++..+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~-----------~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~ 264 (352)
T cd00616 196 GRDRDRFKYEHEILGYNYRLSEIQAAIGL-----------AQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVK 264 (352)
T ss_pred CCCCCCCccccceeeeccCcCHHHHHHHH-----------HHHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCc
Confidence 100 0111121111111 0123345566777888999999999988888764322
Q ss_pred -e-eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC---------------C-----CCcEEEE
Q 041151 370 -A-MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK---------------E-----GIFHLRT 427 (463)
Q Consensus 370 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~---------------~-----~~~~lRi 427 (463)
. +.+.+.++...+ . +.+.+.+.|.++||.+......... + ..+.+|+
T Consensus 265 ~~~~~~~~~~~~~~~----------~-~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l 333 (352)
T cd00616 265 HSYHLYVIRLDPEAG----------E-SRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSL 333 (352)
T ss_pred eeeEEEEEEECCcCC----------C-CHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEc
Confidence 1 222222221001 1 2333456678889976532111000 0 0257999
Q ss_pred Eec--CCcCcHHHHHHHHH
Q 041151 428 TIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 428 s~~--~~~e~i~~~~~~l~ 444 (463)
++. .+++|++.++++|+
T Consensus 334 ~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 334 PLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred cCCCCCCHHHHHHHHHHhC
Confidence 999 89999999988774
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=161.09 Aligned_cols=315 Identities=12% Similarity=0.057 Sum_probs=201.6
Q ss_pred cHHHHHHHHHHhhhc-C---CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC---
Q 041151 82 PADAIARAKHYLSLT-S---GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE--- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~-~---~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~--- 154 (463)
++.+.+++...+.+. . +....|+..+...++.....+...+.+|.. -.+|..-+| ++|...++.+++ +|
T Consensus 62 s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~--~anvqp~Sg-~~An~~v~~all-~~~~~ 137 (493)
T PRK13580 62 SLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAE--HAYVQPHSG-ADANLVAFWAIL-AHKVE 137 (493)
T ss_pred CHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCC--cccccCCCc-HHHHHHHHHHHh-ccccc
Confidence 677888876665542 1 012234444444556655556666665533 346666666 668888999998 66
Q ss_pred ----------------------------CCEEEEc---cCcee--------------------cCCCcccChHHHHHHHH
Q 041151 155 ----------------------------GDGVVLL---FHTTW--------------------KRQQIGVLIINDLQQSV 183 (463)
Q Consensus 155 ----------------------------gd~Vlvp---~g~~~--------------------~~~~~~~d~~~~l~~~l 183 (463)
||+|+.. .|+++ ......+|. +.+++.+
T Consensus 138 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~-d~l~~~~ 216 (493)
T PRK13580 138 SPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDY-DEIAALA 216 (493)
T ss_pred CcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCH-HHHHHHH
Confidence 7888874 44432 223467999 9999999
Q ss_pred HHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCc
Q 041151 184 AQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEV 263 (463)
Q Consensus 184 ~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (463)
.+ +++.|+++..+|- |...+ +++|.++|+++|+++++|++|....++.+. .. ....+ . . .
T Consensus 217 ~~------~~plvii~g~S~~-~~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~-~~--~~~~~-~----~--~ 276 (493)
T PRK13580 217 RE------FKPLILVAGYSAY-PRRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKV-FT--GDEDP-V----P--H 276 (493)
T ss_pred hh------cCCEEEEeCcccc-CCCcC---HHHHHHHHHHcCCEEEEECchhhceecccc-ch--hhcCC-C----C--C
Confidence 88 7788888877776 44656 777777888999999999999987763111 10 00000 0 1 1
Q ss_pred eEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhh-cccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHH
Q 041151 264 QLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI-ALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGI 341 (463)
Q Consensus 264 ~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 341 (463)
..|+++|++|+|. |-+.|+++ +++++++.+.+..+. ..++..+...+++..+. ... .+.+..
T Consensus 277 ~D~vtgT~hKaL~---GP~GG~I~---~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~----------e~~~~ef~~y 340 (493)
T PRK13580 277 ADIVTTTTHKTLR---GPRGGLVL---AKKEYADAVDKGCPLVLGGPLPHVMAAKAVALA----------EARTPEFQKY 340 (493)
T ss_pred CcEEEeCChhhcc---CCCeEEEE---ecHHHHHHHhhCCCcccCCCccHHHHHHHHHHH----------HHhCccHHHH
Confidence 3488999999883 55579988 488888888544442 22333332222222221 111 112346
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccC-CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC
Q 041151 342 LESLRRRARMMTDGFNSCRNVVCNFT-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~ 420 (463)
++++.++.+.|.+.|.+. |+.+... ..+..+++++.-.. .....+.+.|.+.||.+.+-.....+.
T Consensus 341 ~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~~------------~~g~~a~~~L~e~GI~vn~i~~Ptvp~ 407 (493)
T PRK13580 341 AQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSFG------------LTGRQAESALLDAGIVTNRNSIPSDPN 407 (493)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCHH------------HHHHHHHHHHHHCCeEEccccCCCCCC
Confidence 778999999999999988 8887532 22345555554111 023345668899999998755554444
Q ss_pred C---CcEEEEEecC------CcCcHHHHHHHHHHHHHHH
Q 041151 421 G---IFHLRTTILP------AEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 421 ~---~~~lRis~~~------~~e~i~~~~~~l~~~l~~~ 450 (463)
+ ...|||++.. +++|++++++.|.++++..
T Consensus 408 g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 408 GAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 4 4579999882 4789999999999888754
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-17 Score=164.58 Aligned_cols=211 Identities=16% Similarity=0.221 Sum_probs=142.6
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------C
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------H 163 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g 163 (463)
..|+.. |.+ .++++++++.+.. ..+.+++++|+++++..++ .++ ++||+|+++ + |
T Consensus 125 ~~Y~r~-gnp-t~~aLE~~lA~le----g~e~ai~~~SG~aAi~~il-~ll-~~GD~VI~~~~~y~~t~~ll~~~l~~~G 196 (464)
T PLN02509 125 YDYTRS-GNP-TRDALESLLAKLD----KADRAFCFTSGMAALSAVT-HLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSG 196 (464)
T ss_pred CccCCC-CCH-HHHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHH-HHh-CCCCEEEEcCCchhhHHHHHHHHHHHCC
Confidence 567665 554 6777777776653 3567777788888987666 466 899999997 2 3
Q ss_pred ceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCC
Q 041151 164 TTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243 (463)
Q Consensus 164 ~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~ 243 (463)
+++. .....|+ +.+++++++ ++|+|++++|+||||.+ .++++|+++|+++|++||+|++|+..... .
T Consensus 197 ~~v~-~vd~~d~-e~l~~ai~~------~TklV~lesPsNPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~--~ 263 (464)
T PLN02509 197 VVVK-RVNTTNL-DEVAAAIGP------QTKLVWLESPTNPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPVLS--R 263 (464)
T ss_pred eEEE-EeCCCCH-HHHHHhCCc------CCeEEEEECCCCCCCCH---HHHHHHHHHHHHcCCEEEEECCccccccC--C
Confidence 3331 1112467 899988876 79999999999999986 56899999999999999999998754331 1
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhh-cccCChHHHHHHHHhcC
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI-ALSPNVPAQIFMGLMVN 322 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~ 322 (463)
++ . . . -.+++.|++|++.|..+.-.|++++ .++.+.+.+...+.. ....++.. +...+.
T Consensus 264 ---pl-~----~----g---aDivv~S~tK~l~G~gdv~gG~v~~--~~~~l~~~~~~~~~~~g~~l~p~~---A~l~lr 323 (464)
T PLN02509 264 ---PL-E----L----G---ADIVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFD---CWLCLR 323 (464)
T ss_pred ---hh-h----c----C---CcEEEecCcccccCCCccceeEEEe--ccHHHHHHHHHHHHhcCCCcCHHH---HHHHHh
Confidence 11 1 1 1 2489999999984434455788875 355566665544432 22223332 222222
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 323 PLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.++.+..+.++..+++..+.+.|++.|.++
T Consensus 324 -----------~L~tL~~R~~r~~~nA~~la~~L~~~p~V~ 353 (464)
T PLN02509 324 -----------GIKTMALRIEKQQENARKIAMYLSSHPRVK 353 (464)
T ss_pred -----------hhhhHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 233445567778888899999999887653
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-17 Score=165.69 Aligned_cols=176 Identities=15% Similarity=0.188 Sum_probs=130.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++..++++.+.+.+ ....+++ ...+|++++|++++ .+.++.++|+++++.+++.++ + ++||+|++
T Consensus 13 ~~~e~~~~~~~l~~---~~~~~g~--~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~-~~Gd~Viv 78 (379)
T PRK11658 13 GDEELAAVKEVLRS---GWITTGP--KNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGI-GPGDEVIT 78 (379)
T ss_pred CHHHHHHHHHHHHc---CCccCCH--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCC-CCCCEEEE
Confidence 67778888887765 2223333 46899999999985 246788899999999999998 6 89999999
Q ss_pred c-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
| .|+++ ..+.+.+|+ +.+++++++ ++|+|+ |+||+|...+ +++|.++|+
T Consensus 79 ~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d~-~~l~~~i~~------~tkav~---~~~~~G~~~d---~~~i~~~a~ 145 (379)
T PRK11658 79 PSLTWVSTLNMIVLLGATPVMVDVDRDTLMVTP-EAIEAAITP------RTKAII---PVHYAGAPAD---LDAIRAIGE 145 (379)
T ss_pred CCCcHHHHHHHHHHcCCEEEEEecCCCcCCcCH-HHHHHhccc------CCeEEE---EeCCCCCcCC---HHHHHHHHH
Confidence 7 66666 234567899 999999987 799987 6667999876 677888899
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
++|++||+|++|+......+... ...+ +.+.||++.. .+++.+.|++++ .++++.++++..
T Consensus 146 ~~gi~vi~D~a~a~g~~~~~~~~--------------g~~g--~~~~Sf~~~K-~l~~g~GG~v~~--~~~~~~~~~~~~ 206 (379)
T PRK11658 146 RYGIPVIEDAAHAVGTYYKGRHI--------------GARG--TAIFSFHAIK-NITCAEGGLVVT--DDDELADRLRSL 206 (379)
T ss_pred HcCCeEEEECCCccCCeECCeec--------------CCCC--CEEEeCCCCC-cCcccCceEEEE--CCHHHHHHHHHH
Confidence 99999999999985322122111 1111 2456777555 557788999886 468888888765
Q ss_pred h
Q 041151 303 A 303 (463)
Q Consensus 303 ~ 303 (463)
.
T Consensus 207 ~ 207 (379)
T PRK11658 207 K 207 (379)
T ss_pred H
Confidence 4
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=164.28 Aligned_cols=199 Identities=11% Similarity=0.170 Sum_probs=135.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~~~ 170 (463)
...|++.+|++.+ . ...+++++| +.++..++ .++ +|||+|+++ + |+++ ..
T Consensus 52 ~~~Le~~lA~l~g------~-~~~~~~~sG-~aai~~~~-~~l-~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v-- 119 (377)
T PRK07671 52 RAALEELIAVLEG------G-HAGFAFGSG-MAAITAVM-MLF-SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFV-- 119 (377)
T ss_pred HHHHHHHHHHHhC------C-CceEEeCCH-HHHHHHHH-HHh-CCCCEEEECCCccchHHHHHHHHHhcCCeEEEEE--
Confidence 5688888888875 2 235666665 66787765 466 899999997 2 2333 11
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
...|+ +.+++++++ ++++|++++|+||||.+.+ +++|.++|+++++++|+|++|....+ . . ++ .
T Consensus 120 ~~~d~-~~l~~ai~~------~tklV~le~P~NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~-~-~---p~-~ 183 (377)
T PRK07671 120 DTSNL-EEVEEAIRP------NTKAIYVETPTNPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYW-Q-S---PI-S 183 (377)
T ss_pred CCCCH-HHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCCcccc-C-C---hh-h
Confidence 12378 999999887 8999999999999999866 77777788899999999999976433 1 1 11 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhh-cccCChHHHHHHHHhcCCCCCCCc
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI-ALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
+ . ..|++.|+||++.|..+.-.|++++ .++++++++...+.. ....+......+..-+
T Consensus 184 ~--------g---~Divv~S~sK~l~G~~~~~~G~~v~--~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l-------- 242 (377)
T PRK07671 184 L--------G---ADIVLHSATKYLGGHSDVVAGLVVV--NSPELAEDLHFVQNSTGGILGPQDSWLLLRGL-------- 242 (377)
T ss_pred h--------C---CeEEEecCcccccCCccceeEEEEe--CcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCc--------
Confidence 1 1 2489999999994344456777775 567888888877762 3333343333222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
+.+..+.++..++...+.+.|++.|++
T Consensus 243 ------~tl~~R~~~~~~na~~la~~L~~~~~v 269 (377)
T PRK07671 243 ------KTLGIRMEEHETNSRAIAEFLNNHPAV 269 (377)
T ss_pred ------ChHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 123335556678888899999887665
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-17 Score=165.31 Aligned_cols=319 Identities=12% Similarity=0.054 Sum_probs=191.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+.+.+. ..++......+.+.++|+.+.+..+ ..-+.+++++++++|+..+++....-.| ..|+.
T Consensus 59 ~p~v~~Ai~~ql~~~----~~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~ 132 (443)
T PRK08360 59 NPRVVKAIKEQTDKL----IHYTPIYGFPVEPLLLAEKLIEIAP--GDNPKVSFGLSGSDANDGAIKFARAYTKRRKILS 132 (443)
T ss_pred CHHHHHHHHHHHHhc----cCccccccCcHHHHHHHHHHHHhCC--CCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEE
Confidence 778999998888762 1222222223555667777654422 1125899999999999999986531123 34444
Q ss_pred c----cCcee-----------------c---------CCC----cc--------cChHHHHHHHHHHHHhcCCceeEEEE
Q 041151 161 L----FHTTW-----------------K---------RQQ----IG--------VLIINDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 161 p----~g~~~-----------------~---------~~~----~~--------~d~~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
- +|... + .+. +. .++ +.+++.+.... .+.++.+|++
T Consensus 133 ~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~~~iAAvi~ 210 (443)
T PRK08360 133 YLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECV-EYIKEKFEGEV-YAEGVAALFA 210 (443)
T ss_pred EeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHH-HHHHHHHHhcc-CCCCeEEEEE
Confidence 2 33221 0 000 00 112 44555554310 1236888877
Q ss_pred ECCCCCCccCCC-HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 199 INPGNPTGQCLS-EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 199 ~~p~NPtG~~~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
.--+||+|.+++ .+.+++|.++|++||+++|+||+|..+.+. +. ....... ++ ..+ + .++||++ +
T Consensus 211 eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~-G~-~~a~~~~--~~----~pD--i---itlsK~l-~ 276 (443)
T PRK08360 211 EPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRT-GK-WFAIEHF--GV----EPD--I---ITLGKPL-G 276 (443)
T ss_pred CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-cc-chhhhhc--CC----CCC--E---EEecccc-c
Confidence 754799999887 557999999999999999999999986542 22 1111111 11 221 2 3679999 6
Q ss_pred CCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041151 278 ECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 278 ~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 356 (463)
+|+|+||++ +++++++.+..... .+++.+++.+.++.+.|+ .+++ +.+.++.+++-+++.+.|
T Consensus 277 -~G~pigav~---~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~-----------~l~~-~~l~~~~~~~g~~l~~~L 340 (443)
T PRK08360 277 -GGLPISATI---GRAEIMDSLPPLAHAFTLSGNPVASAAALAVIE-----------EIEE-KNLLKRAEKLGNYTKKRL 340 (443)
T ss_pred -CCceeEEEE---EcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHH-----------HHHH-cCHHHHHHHHHHHHHHHH
Confidence 899999999 58889888865533 567788888888888874 2221 134555556656666666
Q ss_pred hc----CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 357 NS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 357 ~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
++ .|-+.-+...|-+ +-+.+..+... ..........+...+.++||.+.+.. ...+|++.+
T Consensus 341 ~~l~~~~~~v~~vrg~Gl~-~gie~~~~~~~-----~~~~~~~~~~~~~~l~~~Gi~~~~~~-------~~~lr~~P~l~ 407 (443)
T PRK08360 341 EEMKKKHELIGDVRGIGLM-IGVDLVKDRET-----KERAYEEAAKVVWRAWELGLIVTFFS-------GNVLRIQPPLT 407 (443)
T ss_pred HHHHHhCCCeeeeeccceE-EEEEEecCCcc-----cCccHHHHHHHHHHHHHCCeEEeecC-------CCEEEEeCCCC
Confidence 54 3322223344433 33222111000 00000012233455778899986521 136999777
Q ss_pred CCcCcHHHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+++++++++++|.++++.+.
T Consensus 408 ~t~~~id~~~~~l~~~l~~~~ 428 (443)
T PRK08360 408 IEKEVLDEGLDILEEAIEDVE 428 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998763
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-17 Score=163.77 Aligned_cols=302 Identities=14% Similarity=0.131 Sum_probs=187.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++..++++.+.+.+ .. |.......++|++++++++ . +..++++|+++++..++.++ + ++||+|++
T Consensus 9 ~~~~~~~v~~~~~~---~~--~~~g~~~~~le~~la~~~g------~--~~~v~~~sgt~al~~~l~al~~-~~Gd~Viv 74 (380)
T TIGR03588 9 DQDDIDAVVEVLKS---DF--LTQGPTVPAFEEALAEYVG------A--KYAVAFNSATSALHIACLALGV-GPGDRVWT 74 (380)
T ss_pred CHHHHHHHHHHHhc---CC--ccCChhHHHHHHHHHHHHC------C--CeEEEEcCHHHHHHHHHHHcCC-CCCCEEEe
Confidence 66778888877765 22 3333456899999999985 2 34556667899999999998 6 89999999
Q ss_pred c-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
| .|+++ ..+.+.+|+ +.+++.+++. ..+++++|+++ |++|...+ +++|.++|+
T Consensus 75 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~-~~l~~~i~~~--~~~~t~~v~~~---~~~G~~~~---~~~i~~l~~ 145 (380)
T TIGR03588 75 TPITFVATANCALYCGAKVDFVDIDPDTGNIDE-DALEKKLAAA--KGKLPKAIVPV---DFAGKSVD---MQAIAALAK 145 (380)
T ss_pred CCcchHHHHHHHHHcCCEEEEEecCCCcCCcCH-HHHHHHhhcc--cCCCceEEEEe---CCCCccCC---HHHHHHHHH
Confidence 7 57666 234677999 9999999821 00178998854 46888765 777888899
Q ss_pred hCCeEEEecccccccc-cCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHH
Q 041151 223 QENLVLLGDEVYQQNI-YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
++|++||+|++|+... + ++.+..+. .+ . .+.+.|++ |.+ +. | ..|++++ .++++.+++
T Consensus 146 ~~~~~lI~D~a~a~g~~~-~~~~~g~~-----~~----~----d~~~~S~~~~K~~-~~-~-~GG~v~~--~~~~~~~~~ 206 (380)
T TIGR03588 146 KHGLKIIEDASHALGAEY-GGKPVGNC-----RY----A----DATVFSFHPVKII-TT-A-EGGAVTT--NDEELAERM 206 (380)
T ss_pred HcCCEEEEECCCcccCcc-CCEeCCCc-----cc----c----ceEEEecCCCCcc-cc-c-CceEEEE--CCHHHHHHH
Confidence 9999999999998642 3 22221110 01 1 26677776 877 43 2 5788876 578888887
Q ss_pred HhhhhhcccCC-----------------------hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041151 300 YKIASIALSPN-----------------------VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 300 ~~~~~~~~~~~-----------------------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 356 (463)
+.......... .+....++..+ ..++.++++.++-+++.+++.+.|
T Consensus 207 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~-----------~qL~~l~~~~~~r~~~~~~~~~~L 275 (380)
T TIGR03588 207 RLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAALGL-----------SQLKKLDRFVAKRREIAARYDRLL 275 (380)
T ss_pred HHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66543111110 00111111111 012334556666777788899999
Q ss_pred hcCCCcccccC-C---ceeEE-eeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC-----------CCC-
Q 041151 357 NSCRNVVCNFT-E---GAMYS-FPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF-----------GQK- 419 (463)
Q Consensus 357 ~~~pg~~~~~~-~---g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f-----------~~~- 419 (463)
.++|++.+..+ . .+++. .+.+....+ .+.+.+.+.|+++||.++..... ...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~ 344 (380)
T TIGR03588 276 KDLPYFTPLTIPLGSKSAWHLYPILLDQEFG-----------CTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGD 344 (380)
T ss_pred cCCCCccCCCCCCCCEeEEEEEEEEECCcCC-----------CCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCC
Confidence 88877664433 1 12222 222221011 02333455678899988743211 000
Q ss_pred -C-----CCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 420 -E-----GIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 420 -~-----~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
+ ....+++.+. .+++|++..++.|++++
T Consensus 345 ~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~ 380 (380)
T TIGR03588 345 LPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL 380 (380)
T ss_pred CcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 0 0146788777 78899999999998764
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-17 Score=164.15 Aligned_cols=141 Identities=13% Similarity=0.172 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~~~ 170 (463)
...|.+.+|++.+ .+..++++|+++++..++..++ ++||+|+++ + |+++ .-+
T Consensus 66 ~~~Le~~lA~leg--------~~~al~~~sG~~Ai~~al~~ll-~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd- 135 (431)
T PRK08248 66 TDVFEKRIAALEG--------GIGALAVSSGQAAITYSILNIA-SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVD- 135 (431)
T ss_pred HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEEC-
Confidence 4678888888763 4577888888999999999988 899999997 2 3333 111
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
..|+ +.+++++++ ++++|++++|+||||.+++ +++|+++|++++++||+|++|+... ...++ .
T Consensus 136 -~~d~-e~l~~ai~~------~tklV~l~sp~NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~~~-----~~~pl-~ 198 (431)
T PRK08248 136 -PSDP-ENFEAAITD------KTKALFAETIGNPKGDVLD---IEAVAAIAHEHGIPLIVDNTFASPY-----LLRPI-E 198 (431)
T ss_pred -CCCH-HHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEeCCCCccc-----cCChh-H
Confidence 1377 999998876 7999999999999999998 5678888889999999999986321 11111 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
+ +..+++.|++|++ |.+|.++|.+++
T Consensus 199 ----~-------gaDivv~S~tK~l-gg~g~~~Gg~v~ 224 (431)
T PRK08248 199 ----H-------GADIVVHSATKFI-GGHGTSIGGVIV 224 (431)
T ss_pred ----c-------CCCEEEEcCcccc-CCCCCceEEEEE
Confidence 1 2348889999999 889999999886
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-17 Score=167.05 Aligned_cols=320 Identities=12% Similarity=0.076 Sum_probs=188.6
Q ss_pred cHHHHHHHHHHhhhcCCCC-CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGL-GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl 159 (463)
++.+.+++.+++....... ..| ..+....+++.+.+... -..+.+++++++++|+..+++.... .....|+
T Consensus 61 ~p~v~~a~~~q~~~~~~~~~~~~-----~~~~~~~la~~L~~~~~--~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii 133 (433)
T PRK08117 61 HPKVVQAIKEQADKLMHGPSGVI-----YYESILKLAEELAEITP--GGLDCFFFSNSGAEAIEGALKLAKHVTKRPYII 133 (433)
T ss_pred CHHHHHHHHHHHHhccCcccccc-----CCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEE
Confidence 7789999988887631111 011 12444555555544321 1235899999999999999986321 1224444
Q ss_pred Ec----cCcee-----c------CCCcc----------------------------cChHHHHHHHHHHHHhcCCceeEE
Q 041151 160 LL----FHTTW-----K------RQQIG----------------------------VLIINDLQQSVAQARSKGITVRAM 196 (463)
Q Consensus 160 vp----~g~~~-----~------~~~~~----------------------------~d~~~~l~~~l~~~~~~~~~~~~i 196 (463)
.- +|... . ...+. -++ +.+++.++... .+.++.+|
T Consensus 134 ~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~~~aav 211 (433)
T PRK08117 134 SFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECL-RDLESLFKHQV-TPEEVAAV 211 (433)
T ss_pred EECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHH-HHHHHHHHhcc-CCCcEEEE
Confidence 43 22111 0 00000 144 56666665311 11256666
Q ss_pred EEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCccc
Q 041151 197 VIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275 (463)
Q Consensus 197 ~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 275 (463)
++.-...-.|.+ .+.+.+++|.++|++||+++|+||+|..+... +. .+.. ..+++ ..-+.|+||.+
T Consensus 212 i~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~-G~---~~~~--~~~gv-------~pDi~t~sK~l 278 (433)
T PRK08117 212 IIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRT-GE---WFAA--QTFGV-------VPDIMTIAKGI 278 (433)
T ss_pred EECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcc-cc---chhH--hhcCC-------CCCEeehhhhc
Confidence 665444445665 57888999999999999999999999975432 22 1111 12211 12347999999
Q ss_pred CCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 276 WGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 276 ~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
+ +|+++|+++ +++++.+.+..... .+++.+++.+.++.+.|+ .++ .+.+.++++++.+.+.+
T Consensus 279 -g-~G~pigav~---~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~-----------~l~-~~~l~~~~~~~g~~l~~ 341 (433)
T PRK08117 279 -A-SGLPLSAVV---ASKELMEQWPLGSHGTTFGGNPVACAAALATLE-----------VIK-EEKLLDNANEMGAYALE 341 (433)
T ss_pred -c-CCCcceeEE---EcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHH-----------HHH-hccHHHHHHHHHHHHHH
Confidence 6 799999998 58888887754333 456778999988888874 111 12344455555556666
Q ss_pred HhhcCC---CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 355 GFNSCR---NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 355 ~L~~~p---g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
.|+++. ++....+..|+++.+.+..+... ........+...+.++||.+.+.. . ..+.+|++++
T Consensus 342 ~L~~l~~~~~~~~~vrg~Gl~~gi~~~~~~~~-------~~~~~~~~~~~~l~~~Gv~~~~~g---~--~~~~lRl~p~~ 409 (433)
T PRK08117 342 RLEVLKEKHPVIGDVRGIGLMIGIEIVDPDGE-------PDGDAVEKILDKCLEKGLLFYLCG---N--AGNVLRMIPPL 409 (433)
T ss_pred HHHHHHhcCCceeeeecCCcEEEEEEecCCCC-------cchHHHHHHHHHHHHCCCEEeecC---C--CCCEEEEeCCc
Confidence 555431 11112233445555444322100 000123334566778899987632 1 2348999965
Q ss_pred -CCcCcHHHHHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.++++|++++++|.++++++.+
T Consensus 410 ~~t~~~i~~~~~~l~~~l~~~~~ 432 (433)
T PRK08117 410 TVTKEEIDEGLDILDEALTEYEA 432 (433)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999987643
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-17 Score=162.83 Aligned_cols=317 Identities=13% Similarity=0.073 Sum_probs=189.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+++... ....+.. ...+...++|+.+.+.... ...+.+++++++++|+..+++....-.| .+|+.
T Consensus 58 ~p~v~~ai~~ql~~~--~~~~~~~--~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~ 132 (421)
T PRK09792 58 HPDLVAAVEQQLQQF--THTAYQI--VPYESYVTLAEKINALAPV-SGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIA 132 (421)
T ss_pred CHHHHHHHHHHHHhc--cCcccCc--cCCHHHHHHHHHHHHhCCC-CCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEE
Confidence 778899998888763 1111111 1234445566665443211 1125899999999999999987631123 34554
Q ss_pred c----cCcee----------------------------cCCCccc----ChHHHHHHHHHHHHhcCCceeEEEEECCCCC
Q 041151 161 L----FHTTW----------------------------KRQQIGV----LIINDLQQSVAQARSKGITVRAMVIINPGNP 204 (463)
Q Consensus 161 p----~g~~~----------------------------~~~~~~~----d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NP 204 (463)
- +|... +.+..++ ++ +.+++.++... ...++.+|++.-.++|
T Consensus 133 ~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~-~~l~~~~~~~~-~~~~iaavi~EPvq~~ 210 (421)
T PRK09792 133 FSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSL-DAIERLFKSDI-EAKQVAAIIFEPVQGE 210 (421)
T ss_pred ECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHH-HHHHHHHHhcc-CCCceEEEEEccccCC
Confidence 3 22211 0000001 23 56666665310 0126788888855999
Q ss_pred CccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee
Q 041151 205 TGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG 283 (463)
Q Consensus 205 tG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 283 (463)
+|..+ +.+.+++|.++|++|++++|+||++..+.+. +.. ..... ++. .. . +.||||++ + +|+++
T Consensus 211 ~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~-G~~-~a~~~----~~~--~p---D--i~t~gK~l-~-~G~pi 275 (421)
T PRK09792 211 GGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFART-GKL-FAMDH----YAD--KP---D--LMTMAKSL-A-GGMPL 275 (421)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCC-Cch-hHHHh----cCC--CC---c--EEEeehhh-c-CCCce
Confidence 99765 8999999999999999999999999987552 221 12211 211 11 1 58999999 5 79999
Q ss_pred EEEEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh----c
Q 041151 284 GYFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN----S 358 (463)
Q Consensus 284 G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~ 358 (463)
||++ +++++.+.+.... ..+++.+++.+.++.+.++ ++++ .+..++.++..+.+.+.|+ +
T Consensus 276 gav~---~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~-----------~l~~-~~~~~~~~~~g~~l~~~l~~l~~~ 340 (421)
T PRK09792 276 SGVV---GNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLN-----------IIDK-ESLCERANQLGQRLKNTLIDAKES 340 (421)
T ss_pred EEEE---EcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHH-----------HHHh-hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 5888888775433 2577889999997777663 1111 0122222233333333332 2
Q ss_pred CCCcccccCCc-eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc
Q 041151 359 CRNVVCNFTEG-AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED 435 (463)
Q Consensus 359 ~pg~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~ 435 (463)
+|. +..+.| |+++|+.+.-+... .........+...+.++||.+.+... ..+.+|+.++ .++++
T Consensus 341 ~p~--v~~vrG~Gl~~~ie~~~~~~~------~~~~~~~~~l~~~~~~~Gv~i~~~g~-----~~~~irl~P~l~i~~~e 407 (421)
T PRK09792 341 VPA--IAAVRGLGSMIAAEFNDPQTG------EPSAAIAQKIQQRALAQGLLLLTCGA-----YGNVIRFLYPLTIPDAQ 407 (421)
T ss_pred CCC--cceecccceEEEEEecCCccC------CcchHHHHHHHHHHHHCCcEEeecCC-----CCCEEEEeCCCcCCHHH
Confidence 443 334566 88899665422100 00000123344556678999964221 2347999988 78999
Q ss_pred HHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFND 448 (463)
Q Consensus 436 i~~~~~~l~~~l~ 448 (463)
+++++++|.+++.
T Consensus 408 i~~~~~~l~~~l~ 420 (421)
T PRK09792 408 FDAAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-16 Score=158.31 Aligned_cols=209 Identities=12% Similarity=0.120 Sum_probs=139.8
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cC
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FH 163 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g 163 (463)
..|+ .+..+.++++++.+....+ .++.+++++ +++|+..++.+++ +|||+|+++ .|
T Consensus 56 y~Ys--R~gnPt~~~Le~~la~le~---~~~~v~~sS-G~aAi~~~l~all-~~GD~Vlv~~~~Y~~~~~l~~~~l~~~G 128 (395)
T PRK05967 56 YTYG--TRGTPTTDALCKAIDALEG---SAGTILVPS-GLAAVTVPFLGFL-SPGDHALIVDSVYYPTRHFCDTMLKRLG 128 (395)
T ss_pred CccC--CCCChHHHHHHHHHHHHhC---CCCEEEECc-HHHHHHHHHHHhc-CCCCEEEEccCCcHHHHHHHHHHHHhcC
Confidence 3454 3334555556665543322 334555555 6899999999998 999999997 23
Q ss_pred cee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCC
Q 041151 164 TTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 164 ~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~ 242 (463)
+++ .-+ . -+. +.+++++++ ++|+|++++|+||++. ..++++|+++|+++|+++++|++|+...+-
T Consensus 129 i~v~~vd-~-~~~-e~l~~al~~------~TklV~lesPsNP~l~---v~dl~~I~~la~~~g~~vvVD~t~a~p~~~-- 194 (395)
T PRK05967 129 VEVEYYD-P-EIG-AGIAKLMRP------NTKVVHTEAPGSNTFE---MQDIPAIAEAAHRHGAIVMMDNTWATPLYF-- 194 (395)
T ss_pred eEEEEeC-C-CCH-HHHHHhcCc------CceEEEEECCCCCCCc---HHHHHHHHHHHHHhCCEEEEECCccCceec--
Confidence 333 111 1 134 778888877 8999999999999764 467999999999999999999999864331
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhc
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMV 321 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 321 (463)
.++ .+ + -.|++.|.+|.++|..++.+|+++ .+++..+++..... .+...++.....+..-+
T Consensus 195 ---~pl-~~--------G---aDivv~S~tKy~~Gh~d~~~G~v~---~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl 256 (395)
T PRK05967 195 ---RPL-DF--------G---VDISIHAATKYPSGHSDILLGTVS---ANEKCWPQLLEAHGTLGLCAGPDDTYQILRGL 256 (395)
T ss_pred ---Chh-Hc--------C---CCEEEEecccccCCCCCeeEEEEE---cCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc
Confidence 111 11 2 238999999998777888899877 57777777764444 33344444433333332
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
+.+.-+.++..++...+.+.|++.|.+
T Consensus 257 --------------~Tl~lR~~~~~~na~~lA~~L~~hp~v 283 (395)
T PRK05967 257 --------------RTMGIRLEHHRKSALEIARWLEGRPDV 283 (395)
T ss_pred --------------ccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 223334455677778888888887665
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-16 Score=163.84 Aligned_cols=316 Identities=14% Similarity=0.099 Sum_probs=192.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCcc---CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHH--HH-HHhcCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAY---SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQT--LN-CVIRGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y---~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~--~~-~l~~~~g 155 (463)
|+.+.+++.+.... ...+.| +..+|..+++.++++++.+.+|.+ ...+..++|+.+.+..+ ++ .+. ++|
T Consensus 83 ~p~i~~~~~~~~~~--~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~r~~~~-~~G 157 (481)
T PRK04366 83 NPKINEKVARLPGF--AELHPLQPEETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMIRAYHE-ARG 157 (481)
T ss_pred CHHHHHHHHhCcch--hcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHHHHHhh-ccC
Confidence 78888888765222 245777 457799999999999999988864 34555667766665533 32 334 677
Q ss_pred C----EEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 156 D----GVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 156 d----~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
| +|+++ .|+++ ...++.+|+ +.|++.+.+ ++++|++++|| |||.+ .+++
T Consensus 158 d~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~-e~L~~~i~~------~t~~V~v~~Pn-~tG~~--~~dl 227 (481)
T PRK04366 158 DTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDL-EALKAAVGE------DTAALMLTNPN-TLGLF--ERNI 227 (481)
T ss_pred cCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCH-HHHHhhccc------CCeEEEEeCCC-Ccccc--chHH
Confidence 6 88886 56666 334578999 999999977 79999999998 99964 3579
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC----CceeEEEEecC
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC----GQRGGYFEMTN 290 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~----G~R~G~~~~~~ 290 (463)
++|+++|+++|+++++|.++..... +.. +. .+.+-.++++|.+|+| +.| |-.+|++.+
T Consensus 228 ~eI~~~a~~~gal~iVD~a~~~~~~-g~~---~~-----------~~~GaD~~~~~~hK~l-~~P~g~Ggp~~G~l~~-- 289 (481)
T PRK04366 228 LEIAEIVHEAGGLLYYDGANLNAIL-GKA---RP-----------GDMGFDVVHLNLHKTF-STPHGGGGPGSGPVGV-- 289 (481)
T ss_pred HHHHHHHHHcCCEEEEEecChhhhc-ccC---Cc-----------cccCCCEEEEechhhc-CCCCCCCCCCeeeeee--
Confidence 9999999999999999999864322 111 11 1112348889999998 433 334788875
Q ss_pred CChhHHHHHHhh----h--hh--------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHH
Q 041151 291 IPPKTVDEIYKI----A--SI--------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRA 349 (463)
Q Consensus 291 ~~~~~~~~l~~~----~--~~--------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 349 (463)
.+++.+.+... . .. ..+.+.....++..++. .+-.+ ++++.++..++.
T Consensus 290 -~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~----------~~G~~Gl~~~a~~~~~~a 358 (481)
T PRK04366 290 -KEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIR----------SLGAEGLREVSEDAVLNA 358 (481)
T ss_pred -hhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 55555544100 0 00 00001111122222211 11111 334456667778
Q ss_pred HHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 350 RMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 350 ~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+++.+.|.++..+.+..+.-.-++ +..+. + ...+. +..+ +.+.|.++||.+. +..+.. .....+|+|+
T Consensus 359 ~~l~~~L~~~~~~~~~~~~~~~~~---~~~~~-~----~~~g~-~~~~-v~~~L~~~Gi~~~-~~~~p~-~~~~~l~is~ 426 (481)
T PRK04366 359 NYLKARLKDIYDLPYDRPCMHEFV---LSGKK-L----KETGV-RTLD-IAKRLLDYGFHPP-TIYFPL-IVPEALMIEP 426 (481)
T ss_pred HHHHHHhHhhCcccCCCCeeEEEE---EECcc-c----cccCC-CHHH-HHHHHHHCCccCC-cccccc-ccCCeEEEcc
Confidence 889988887523332111111121 12110 0 00001 2334 4556778899865 222211 1134799999
Q ss_pred c--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
. ++.+||+++++.|+++.++.++.
T Consensus 427 ~e~~t~edid~l~~~l~~i~~~~~~~ 452 (481)
T PRK04366 427 TETESKETLDAFIAAMKQIAEEAKEN 452 (481)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 8 78999999999999998887653
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=159.64 Aligned_cols=199 Identities=13% Similarity=0.154 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC--------------ceecCCCc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH--------------TTWKRQQI 171 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g--------------~~~~~~~~ 171 (463)
...|++.++++.+ ....+++++| +.++..++. ++ +|||+|+++ ++ +++ ....
T Consensus 52 ~~~Le~~la~l~g-------~~~al~~~SG-~~Al~~~l~-~l-~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v-~~vd 120 (380)
T PRK06176 52 RFALEELIADLEG-------GVKGFAFASG-LAGIHAVFS-LF-QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSC-TIID 120 (380)
T ss_pred HHHHHHHHHHHhC-------CCCEEEECCH-HHHHHHHHH-Hc-CCCCEEEEcCCChhHHHHHHHHHHHhcCeEE-EEcC
Confidence 5678888888864 2234555555 668887664 65 899999997 22 222 1111
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
..|+ +.+++++++ ++++|++++|+||||.+.+ +++|+++|++++++||+|++|+...+. .+ + ..
T Consensus 121 ~~d~-e~l~~ai~~------~t~lV~lesP~Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~--~p---~-~~ 184 (380)
T PRK06176 121 TSDL-SQIKKAIKP------NTKALYLETPSNPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ--NP---L-LL 184 (380)
T ss_pred CCCH-HHHHHhcCc------CceEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEECCccccccC--Cc---c-cc
Confidence 2477 999998876 8999999999999999987 667888889999999999999865431 11 1 11
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhhhhh-cccCChHHHHHHHHhcCCCCCCCc
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKIASI-ALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
. -.+++.|+||.+ +.+| .-.|++++ .++++.+++...+.. ....++.....+...++
T Consensus 185 --------g---aDivv~S~tK~l-~g~~d~~gG~vv~--~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~------- 243 (380)
T PRK06176 185 --------G---ADIVVHSGTKYL-GGHSDVVAGLVTT--NNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIK------- 243 (380)
T ss_pred --------C---CCEEEecCceec-cCCccceeeEEEe--cHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccC-------
Confidence 1 238999999999 4444 56777774 456777777666552 22233333333322221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
.+..+.++..++...+.+.|++.|.+
T Consensus 244 -------tl~~R~~~~~~~a~~la~~L~~~p~v 269 (380)
T PRK06176 244 -------TLGLRMEAHQKNALCVAEFLEKHPKV 269 (380)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 11122333445566677777766544
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=159.11 Aligned_cols=147 Identities=15% Similarity=0.201 Sum_probs=109.5
Q ss_pred ccCCCCCCH---HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c-------------
Q 041151 102 AYSDSRGIP---GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F------------- 162 (463)
Q Consensus 102 ~Y~~~~g~~---~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~------------- 162 (463)
.|+. .|.+ .|+++++++.+ .+..+++++++.++..++.+++ ++||+|+++ +
T Consensus 40 ~Y~r-~g~p~~~~lE~~la~leg--------~~~~v~~ssG~~Ai~~~l~all-~~Gd~Vv~~~~~y~~t~~~~~~l~~~ 109 (397)
T PRK05939 40 TYAR-QGTPTTAALEAKITKMEG--------GVGTVCFATGMAAIAAVFLTLL-RAGDHLVSSQFLFGNTNSLFGTLRGL 109 (397)
T ss_pred CcCC-CCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHc-CCCCEEEECCCccccHHHHHHHHHhc
Confidence 4543 2555 88888888864 2334444445899999999998 999999997 2
Q ss_pred Ccee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 163 HTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 163 g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
|+++ .-+ ..|. +++++.+++ ++++|++++|+||||.+ .++++|+++|+++|+++|+|++|+....
T Consensus 110 G~~v~~v~--~~d~-e~l~~~l~~------~tklV~vesp~NptG~v---~dl~~I~~la~~~gi~livD~t~a~~~~-- 175 (397)
T PRK05939 110 GVEVTMVD--ATDV-QNVAAAIRP------NTRMVFVETIANPGTQV---ADLAGIGALCRERGLLYVVDNTMTSPWL-- 175 (397)
T ss_pred CCEEEEEC--CCCH-HHHHHhCCC------CCeEEEEECCCCCCCCH---HhHHHHHHHHHHcCCEEEEECCcccccc--
Confidence 3333 111 1377 999999876 89999999999999988 4589999999999999999999864211
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
... ...+..|++.|+||.+ +.+|.++|++++
T Consensus 176 ---~~~------------~~~gaDivv~S~sK~~-~g~g~~igg~v~ 206 (397)
T PRK05939 176 ---FRP------------KDVGASLVINSLSKYI-AGHGNALGGAVT 206 (397)
T ss_pred ---cCc------------cccCCEEEEecCeecc-cCCCCeEEEEEe
Confidence 001 1112458999999999 778999999886
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=161.76 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------------cCCCcc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------------KRQQIG 172 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------------~~~~~~ 172 (463)
...|++++|++.+ .+..++++++++++..++.+++ ++||+|+++ ++... ......
T Consensus 60 ~~~Le~~lA~l~g--------~~~~l~~ssG~~Ai~~al~al~-~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~ 130 (425)
T PRK06084 60 NDVLEQRVAALEG--------GVGALAVASGMAAITYAIQTIA-EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH 130 (425)
T ss_pred HHHHHHHHHHHhC--------CCceeEehhHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC
Confidence 4688888888864 2456677777899999999998 899999997 33211 000112
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
.|+ +.+++++++ ++++|++++|+||||.+++ +++|.++|++++++||+|++|+.... ..++ ..
T Consensus 131 ~d~-e~le~ai~~------~tklV~lesp~NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~-----~~p~-~~- 193 (425)
T PRK06084 131 DDI-AALEALIDE------RTKAVFCESIGNPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL-----CRPF-EH- 193 (425)
T ss_pred CCH-HHHHHHhcc------CCcEEEEeCCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-----CChh-hc-
Confidence 478 999999987 7999999999999999998 67788889999999999999985422 1111 11
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
. -.|++.|+||++ +.+|.++|.+++
T Consensus 194 -------g---aDivv~S~tK~l-~G~g~~~gG~v~ 218 (425)
T PRK06084 194 -------G---ADIVVHSLTKYI-GGHGTSIGGIVV 218 (425)
T ss_pred -------C---CCEEEECchhcc-cccccceeEEEE
Confidence 1 238999999999 778999998876
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-17 Score=162.83 Aligned_cols=203 Identities=9% Similarity=0.039 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCceecCCCc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTWKRQQI 171 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~~~~~~ 171 (463)
...|++.+|++.+ .+..+.+++++.|+.+++.+++ ++||+|+++ .|+++..-+.
T Consensus 63 v~~lE~~la~leg--------~~~av~~~SG~aAi~~al~all-~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 63 LAAFEQKLAELEG--------GVGAVATASGQAAIMLAVLNIC-SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 4678888888864 3457889999999999999998 899999998 3444422234
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
.+|+ +.+++++++ ++|+|++++|+||++.+.+ +++|+++|+++|+++|+|++|+...+ ..++ ..
T Consensus 134 ~~d~-~~l~~~I~~------~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~~tP~~-----~~pl-~~ 197 (432)
T PRK06702 134 NLTA-DEIVALAND------KTKLVYAESLGNPAMNVLN---FKEFSDAAKELEVPFIVDNTLATPYL-----CQAF-EH 197 (432)
T ss_pred CCCH-HHHHHhCCc------CCeEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEECCCCchhh-----CChh-hc
Confidence 5688 999999988 8999999999999999988 88888899999999999999863211 0011 11
Q ss_pred HHhcCCCCCCCceEEEEecCCcccC----CCCCcee-----EEEEecCCChhHH---------------------HHHH-
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYW----GECGQRG-----GYFEMTNIPPKTV---------------------DEIY- 300 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~----g~~G~R~-----G~~~~~~~~~~~~---------------------~~l~- 300 (463)
.. .|+++|+||.++ +++|+++ +|... .+.+++ .+..
T Consensus 198 --------GA---DIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (432)
T PRK06702 198 --------GA---NIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNG--KYPELVEPDPSYHGVSYVQNFGAAAYIVKARV 264 (432)
T ss_pred --------CC---CEEEEccccccCCCcceeceEEEeCCCcccccc--cccccccccccccccchhhccchhhHHHHHHH
Confidence 22 389999999543 4455554 34331 011221 1111
Q ss_pred -hhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 301 -KIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 301 -~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.........+++....+...|+. +..+.++..++...+.+.|++.|++.
T Consensus 265 ~~~~~~g~~~sp~~a~l~~rgL~T--------------l~lR~~r~~~Na~~la~~L~~~p~V~ 314 (432)
T PRK06702 265 QLLRDYGNCMSPFNAYISNIGLET--------------LHLRMERHSENALAVAKWLADHERIE 314 (432)
T ss_pred HHHHHccCCCCHHHHHHHHhccCc--------------HHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 12233456666666666666542 22334445688889999999887654
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-16 Score=162.44 Aligned_cols=256 Identities=9% Similarity=0.026 Sum_probs=165.3
Q ss_pred CCCCcEEEcCCcHHHHHHHHHHHhcCCCC---EEEEc-----------------cCcee--------cCCCcccChHHHH
Q 041151 128 SDPELIFLTDGASKGVMQTLNCVIRGEGD---GVVLL-----------------FHTTW--------KRQQIGVLIINDL 179 (463)
Q Consensus 128 ~~~~~i~~t~G~~~al~~~~~~l~~~~gd---~Vlvp-----------------~g~~~--------~~~~~~~d~~~~l 179 (463)
.++++|++|+|++++++.++..++ ++++ .|++. .|.++ ....+.+|+ +.+
T Consensus 84 ~~~~~v~~~~~~t~~l~~~~~~~~-~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~-~~l 161 (406)
T TIGR01814 84 AKEDEVVVMNTLTINLHLLLASFY-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRL-EDI 161 (406)
T ss_pred CCCCcEEEeCCchHHHHHHHHHhc-CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCH-HHH
Confidence 578899999999999999999886 5642 56665 24331 233456788 999
Q ss_pred HHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCC
Q 041151 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259 (463)
Q Consensus 180 ~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++.++.. .+++++|++++++|.||.+.+ +++|.++|+++|+++++|++++.... +..+.
T Consensus 162 ~~~~~~~---~~~t~lv~~~~v~~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~-----~id~~---------- 220 (406)
T TIGR01814 162 LDTIEKN---GDDIAVILLSGVQYYTGQLFD---MAAITRAAHAKGALVGFDLAHAVGNV-----PLDLH---------- 220 (406)
T ss_pred HHHHHhc---CCCeEEEEEeccccccceecC---HHHHHHHHHHcCCEEEEEcccccCCc-----ccccc----------
Confidence 8887531 127999999999999999998 77788889999999999999986432 12221
Q ss_pred CCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-h-----------------------hcccCChHHHH
Q 041151 260 SKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA-S-----------------------IALSPNVPAQI 315 (463)
Q Consensus 260 ~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~-----------------------~~~~~~~~~q~ 315 (463)
+.+..+++.|.+|+++|.|| .|..+ ..+ ....+.... . ...+++.....
T Consensus 221 -~~gvD~~~~s~hK~l~g~pG--~~l~v---~~~-~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~ 293 (406)
T TIGR01814 221 -DWGVDFACWCTYKYLNAGPG--AGAFV---HEK-HAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVA 293 (406)
T ss_pred -cCCCCEEEEcCccccCCCCC--eEEEE---ehh-hhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHH
Confidence 22234889999998855566 44333 132 222221110 0 01223444444
Q ss_pred HHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC----CCcccccCC-----ceeEEeeeccCChhhH
Q 041151 316 FMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSC----RNVVCNFTE-----GAMYSFPQIRLPPKAI 384 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~----pg~~~~~~~-----g~~~~~~~~~~~~~~~ 384 (463)
++.++++ +..+ .+.++++.++..+++.+.|.+. +|+.+..|. ++.. . +.+|.
T Consensus 294 ~l~~al~-----------~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v-~--~~~~~--- 356 (406)
T TIGR01814 294 ALRGSLD-----------IFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQL-S--LTHPV--- 356 (406)
T ss_pred HHHHHHH-----------HHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeE-E--EEecC---
Confidence 4554542 2211 4567777888888888888764 357666542 2233 2 23331
Q ss_pred HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c--CCcCcHHHHHHHHHHHH
Q 041151 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~--~~~e~i~~~~~~l~~~l 447 (463)
+..+ +...|.++||.+... ..+.+|+|+ . ++++|+++++++|++++
T Consensus 357 ---------~~~~-~~~~L~~~gi~v~~~-------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 357 ---------PGKA-VFQALIKRGVIGDKR-------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred ---------CHHH-HHHHHHHCCEEEecc-------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 1233 445567789987531 123799998 4 79999999999998764
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-16 Score=159.25 Aligned_cols=297 Identities=14% Similarity=0.201 Sum_probs=181.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
.+..++++.+.+.+ . ..| |..++++++++++.+.+| .+++++++|+++++..++.++ + ++||+|++
T Consensus 10 ~~~~~~~~~~~l~~---~-~~~----g~~~~~~~~e~~la~~~g----~~~~v~~~sgt~al~~~l~~~~~-~~Gd~Viv 76 (375)
T PRK11706 10 VGTELDYIQQAMSS---G-KLC----GDGGFTRRCQQWLEQRFG----SAKVLLTPSCTAALEMAALLLDI-QPGDEVIM 76 (375)
T ss_pred CHHHHHHHHHHHHc---C-Ccc----CCCHHHHHHHHHHHHHhC----CCeEEEECCHHHHHHHHHHHhCC-CCCCEEEE
Confidence 55667777776665 1 122 334677777777766533 468999999999999888766 5 89999999
Q ss_pred c-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
| .|+++ ..+.+.+|+ +++++.+++ ++|+|++++ ++|...+ +++|.++|+
T Consensus 77 ~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d~-~~le~~i~~------~tk~i~~~~---~~G~~~~---~~~i~~la~ 143 (375)
T PRK11706 77 PSYTFVSTANAFVLRGAKIVFVDIRPDTMNIDE-TLIEAAITP------KTRAIVPVH---YAGVACE---MDTIMALAK 143 (375)
T ss_pred CCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCH-HHHHHhcCC------CCeEEEEeC---CCCCccC---HHHHHHHHH
Confidence 8 67776 334567999 999999876 799998764 6898765 677888888
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
++|++||+|++|+.+...++.+..++ . .+.+.||+ |.+ + +|.++++++ .++++.++++
T Consensus 144 ~~~i~vIeD~a~a~g~~~~~~~~g~~-----------~----~~~~~Sf~~~K~l-~-~g~gG~~~~---~~~~~~~~~~ 203 (375)
T PRK11706 144 KHNLFVVEDAAQGVMSTYKGRALGTI-----------G----HIGCFSFHETKNY-T-AGEGGALLI---NDPALIERAE 203 (375)
T ss_pred HcCCEEEEECccccccccCCeeeecC-----------c----CEEEEeCCCCccc-c-ccCCeEEEE---CCHHHHHHHH
Confidence 99999999999997652122221111 1 13444554 998 5 588877877 6888888777
Q ss_pred hhhhhc------------------ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 041151 301 KIASIA------------------LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR-- 360 (463)
Q Consensus 301 ~~~~~~------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p-- 360 (463)
.++... .+.+...+...+++.. ..++.+++..++-+++.+.+.+.|.+++
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~----------~ql~~l~~~~~~R~~~~~~~~~~L~~~~~~ 273 (375)
T PRK11706 204 IIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLW----------AQLEAADRINQRRLALWQRYYDALAPLAEA 273 (375)
T ss_pred HHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 665311 1222222222222210 1233344555555666667777777765
Q ss_pred C-cccc-cCCc----eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC----C------CCCC----C
Q 041151 361 N-VVCN-FTEG----AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS----G------FGQK----E 420 (463)
Q Consensus 361 g-~~~~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~----~------f~~~----~ 420 (463)
| +.+. .+.+ .++.++.+. .+ .+.+.+.+.|.++||.++... . ++.. +
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p 340 (375)
T PRK11706 274 GRIELPSIPDDCKHNAHMFYIKLR--DL-----------EDRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDR 340 (375)
T ss_pred CeeecCCCCCCCceeeEEEEEEEC--Cc-----------CCHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCCh
Confidence 2 3322 1222 223443332 21 123345566888899875321 0 0000 0
Q ss_pred -----CCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 421 -----GIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 421 -----~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
....+-|-+. .+++|++..++.|++++
T Consensus 341 ~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 341 YTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred HHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 0123444444 67788888888888764
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-17 Score=164.82 Aligned_cols=332 Identities=14% Similarity=0.166 Sum_probs=201.0
Q ss_pred hcccceeccCCCCcC-CCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHH
Q 041151 36 EGKKIIFTNVGNPHA-LGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRK 114 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~ 114 (463)
+|++++||..|.+.. +|+ + ++.+.+++.+++... ...|.+..+..+|.+
T Consensus 48 dG~~~lD~~~g~~~~~lGh-----------------------~----~p~i~~a~~~~~~~~---~~~~~~~~~~~~la~ 97 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGH-----------------------A----HPEVVEAVIEAAEKG---LSFGAPTELEVELAE 97 (426)
T ss_pred CCCEEEEcccchhhhhcCC-----------------------C----CHHHHHHHHHHHHhC---CcCCCCCHHHHHHHH
Confidence 577788988886542 221 1 788999999888762 233334333445555
Q ss_pred HHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEEc----cCcee----c--------------C---
Q 041151 115 EVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVLL----FHTTW----K--------------R--- 168 (463)
Q Consensus 115 ~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlvp----~g~~~----~--------------~--- 168 (463)
.+++.+ ...+.+++++++++|+..+++.... ..++.|+.. +|... . .
T Consensus 98 ~L~~~~-------~~~~~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~ 170 (426)
T PRK00062 98 LVIELV-------PSIEMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPE 170 (426)
T ss_pred HHHHhC-------CCCCEEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCc
Confidence 555443 1356899999999999999998541 124666664 33220 0 0
Q ss_pred ----CCcc---cChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCC-HHHHHHHHHHhhhCCeEEEeccccccccc
Q 041151 169 ----QQIG---VLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLS-EANLREILRFCYQENLVLLGDEVYQQNIY 239 (463)
Q Consensus 169 ----~~~~---~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~ 239 (463)
.... .|+ +.+++.+... ..++.+|++. .++| +|.+.+ .+.+++|.++|++||+++|+||+|..+..
T Consensus 171 ~~~~~~~~~~~~d~-~~l~~~i~~~---~~~~aaiivEpv~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~ 245 (426)
T PRK00062 171 DFAKHTLTAPYNDL-EAVEELFEEY---GDEIAAVIVEPVAGN-MGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRV 245 (426)
T ss_pred ccccceEEcCCCCH-HHHHHHHHhC---CCcEEEEEEeCCcCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcccc
Confidence 0000 267 8888888642 1267788887 5555 787775 77899999999999999999999987644
Q ss_pred CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh---hh-hcccCChHHHH
Q 041151 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI---AS-IALSPNVPAQI 315 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~---~~-~~~~~~~~~q~ 315 (463)
+... ... .+++ ..+ +.++||.+ + .|+++|+++ +++++++.+... .. .+++.+++.+.
T Consensus 246 -g~~~---~~~---~~~~--~pD-----i~~~gK~l-~-~G~p~ga~~---~~~~i~~~~~~~~~~~~~~T~~~~p~~~a 306 (426)
T PRK00062 246 -ALGG---AQG---YYGV--TPD-----LTTLGKII-G-GGLPVGAFG---GRREIMEQLAPLGPVYQAGTLSGNPLAMA 306 (426)
T ss_pred -CCcc---HHH---HhCC--Ccc-----hHhhhhHh-h-CCCcceeee---EHHHHHHhhccCCCceecccCcCCHHHHH
Confidence 2211 111 1111 111 36899999 6 789999998 588888888532 22 35678888988
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCccc-ccCCceeEEeeeccCChhh-HHHHhh
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN----SCRNVVC-NFTEGAMYSFPQIRLPPKA-IEAAKR 389 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~pg~~~-~~~~g~~~~~~~~~~~~~~-~~~~~~ 389 (463)
++.+.|+- ++. ++.+++.+++.+++.+.|+ +. ++.. ..+.|.++.+. +..+... .. ...
T Consensus 307 aa~a~L~~-----------~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vrg~G~~~~i~-l~~~~~~~~~-~~~ 371 (426)
T PRK00062 307 AGLATLKL-----------LKE-PGFYEELEALTKRLAEGLKEAAKKA-GIPLTVNRVGSMFGLF-FTDEPVTNYA-DAK 371 (426)
T ss_pred HHHHHHHH-----------Hhc-chHHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEecceEEEE-EecCCCcchh-hhc
Confidence 88887742 111 0233334444444444443 44 3333 34556665432 2111000 00 000
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+.......+...|.++||.+.|.. + ..+|+++..+++++++++++|+++++++
T Consensus 372 ~~~~~~~~~i~~~l~~~Gv~v~~~~-~------~~~~~~~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 372 KSDTERFARFFHAMLDEGVYLAPSQ-F------EAGFVSAAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred cccHHHHHHHHHHHHHCCeEeecCC-c------CceeeeccCCHHHHHHHHHHHHHHHHhh
Confidence 0000012234555678899998732 1 1367887789999999999999998754
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=161.69 Aligned_cols=320 Identities=11% Similarity=0.021 Sum_probs=192.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+.+.+.. .+.......+.+..+++.+.+..... ..+.+++++++++|+..+++.... ....+|+.
T Consensus 58 ~p~v~~ai~~ql~~l~----~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~ 132 (425)
T PRK07495 58 HPRVIAAVKAQLDRFT----HTCHQVVPYENYVRLAERLNALVPGD-FAKKTIFVTTGAEAVENAVKIARAATGRSAVIA 132 (425)
T ss_pred CHHHHHHHHHHHhhcc----CcccCccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHHHHHHHHHHhhCCCeEEE
Confidence 6789999988887631 11111111234445666655432110 125899999999999999986531 12345554
Q ss_pred c----cCcee----------------------------cCCCcccC----hHHHHHHHHHHHHhcCCceeEEEEE-CCCC
Q 041151 161 L----FHTTW----------------------------KRQQIGVL----IINDLQQSVAQARSKGITVRAMVII-NPGN 203 (463)
Q Consensus 161 p----~g~~~----------------------------~~~~~~~d----~~~~l~~~l~~~~~~~~~~~~i~l~-~p~N 203 (463)
- +|... +....+.+ + +.+++.+... ..+.++.+|++. ..+|
T Consensus 133 ~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~l~~~~~~~-~~~~~iaavi~EPv~g~ 210 (425)
T PRK07495 133 FGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSL-AALDKLFKAD-VDPQRVAAIIIEPVQGE 210 (425)
T ss_pred ECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHH-HHHHHHHHhc-cCCCceEEEEECCccCC
Confidence 3 22211 00000111 3 4456655421 011257888777 5566
Q ss_pred CCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCce
Q 041151 204 PTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282 (463)
Q Consensus 204 PtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R 282 (463)
+| ..++.+.+++|.++|++||+++|+||+|..+... +.. ... ...+.+..+.||||.+ + +|++
T Consensus 211 -~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~-G~~-~a~-----------~~~gv~pDi~tlsK~l-~-~G~p 274 (425)
T PRK07495 211 -GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFART-GKL-FAM-----------EHHEVAADLTTMAKGL-A-GGFP 274 (425)
T ss_pred -CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcC-CCc-eee-----------cccCCCCCEEeehhhh-c-CCcc
Confidence 78 4579999999999999999999999999876442 211 111 1112345678999999 5 7999
Q ss_pred eEEEEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc---
Q 041151 283 GGYFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS--- 358 (463)
Q Consensus 283 ~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--- 358 (463)
+|+++ +++++.+.+.... ..+++.+++.+.++.+.++ +++ ...+.++.+++.+++.+.|++
T Consensus 275 igav~---~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~-----------~l~-~~~l~~~~~~~g~~l~~~L~~l~~ 339 (425)
T PRK07495 275 LAAVT---GRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLD-----------VIE-EEDLCERANQLGNRLKQRLASLRE 339 (425)
T ss_pred ceEEE---EcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHH-----------HHH-hchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 5888888775433 2577889999987777763 221 112444445555555555543
Q ss_pred -CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc
Q 041151 359 -CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED 435 (463)
Q Consensus 359 -~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~ 435 (463)
+|.+.-+... |+++|+.+.-+... .....-...+...+.++||.+.+.... .+.+||... .++++
T Consensus 340 ~~~~i~~vrG~-Gl~~~iel~~~~~~------~~~~~~~~~~~~~~~~~Gvl~~~~g~~-----~~~~r~~Ppl~it~~~ 407 (425)
T PRK07495 340 TVPEIADIRGP-GFMNAVEFNDADSG------LPSAEFANRVRLKALEKGLILLTCGVH-----GNVIRFLAPITIQDDV 407 (425)
T ss_pred hCCCeeeeecC-ceEEEEEEecCCCC------CccHHHHHHHHHHHHHCCeEEeecCCC-----CCEEEEeCCCccCHHH
Confidence 2333222223 68888666422100 000001233445567899999763221 247999988 89999
Q ss_pred HHHHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDEFM 451 (463)
Q Consensus 436 i~~~~~~l~~~l~~~~ 451 (463)
+++++++|.++++++.
T Consensus 408 id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 408 FAEALDILEASILEAS 423 (425)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998764
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=144.59 Aligned_cols=317 Identities=17% Similarity=0.161 Sum_probs=205.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCH----HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIP----GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~----~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
+|+++++..++++.++....+-.-.+|++ .|...||+|.+ .|+.++.+.+-.|...++.+++ .|.|.
T Consensus 83 hPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~--------rED~ilypscfdANag~feail-~pedA 153 (417)
T KOG1359|consen 83 HPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHG--------REDTILYPSCFDANAGAFEAIL-TPEDA 153 (417)
T ss_pred ChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhC--------CCceEEeccccccchHHHHHhc-Chhhh
Confidence 78999999999998754443433455655 55666666653 5778888888899999999998 89999
Q ss_pred EEEc--------cCceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 158 VVLL--------FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 158 Vlvp--------~g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
|+-+ .|+++-..-...|+ ..++..+.+..+- +-|+|+....-...|.+.| +++|.+++++||.+++
T Consensus 154 vfSDeLNhASIIdGirLckry~h~dv-~~l~~~l~~a~k~--r~klv~TDg~FSMDGdiaP---l~ei~~La~kYgaLlf 227 (417)
T KOG1359|consen 154 VFSDELNHASIIDGIRLCKRYRHVDV-FDLEHCLISACKM--RLKLVVTDGVFSMDGDIAP---LEEISQLAKKYGALLF 227 (417)
T ss_pred hhccccccchhhhhhHHHhhhccchh-HHHHHHHHHhhhh--eEEEEEecceeccCCCccc---HHHHHHHHHhcCcEEE
Confidence 8887 55555334445666 7777666543222 5677766677777899988 6667777889999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccC
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSP 309 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (463)
+||.|+.+.++ +...... .. ++. ..+ -.|..++++|++ | |.-.||.. +|+.+++.+++.....+..
T Consensus 228 iDecHaTgf~G-~tGrGt~-E~---~~v--m~~-vdiinsTLgKAl-G--ga~GGytt---gp~~li~llrqr~RpylFS 293 (417)
T KOG1359|consen 228 IDECHATGFFG-ETGRGTA-EE---FGV--MGD-VDIINSTLGKAL-G--GASGGYTT---GPKPLISLLRQRSRPYLFS 293 (417)
T ss_pred Eeecccceeec-CCCCChH-HH---hCC--CCc-ceehhhhhhhhh-c--CCCCCCcc---CChhHHHHHHhcCCceeec
Confidence 99999988883 3332222 21 211 122 357889999998 3 55569998 7999999998775422222
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+...++.... ..|+..+ .......+.+.+-+.+++..+.. |+.+.......... -+....
T Consensus 294 nslppavV~~a~-------ka~dllm-~s~~~i~~~~a~~qrfr~~me~a-GftIsg~~hPI~pv---~lGda~------ 355 (417)
T KOG1359|consen 294 NSLPPAVVGMAA-------KAYDLLM-VSSKEIQSRQANTQRFREFMEAA-GFTISGASHPICPV---MLGDAR------ 355 (417)
T ss_pred CCCChhhhhhhH-------HHHHHHH-hhHHHHHHHHHHHHHHHHHHHhc-CceecCCCCCccce---ecccHH------
Confidence 222211111110 1111122 12233444556666666666655 87776533322211 111110
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
-...+..++| +.||+|...+..-.+++...+|+.++ +++|+++++++++.++.+.+
T Consensus 356 ----lA~~~ad~lL-k~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 356 ----LASKMADELL-KRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred ----HHHHHHHHHH-hcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhh
Confidence 1345555555 57999998776667778888999998 89999999999999887654
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-16 Score=149.89 Aligned_cols=266 Identities=15% Similarity=0.207 Sum_probs=195.8
Q ss_pred CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCC
Q 041151 131 ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGI 191 (463)
Q Consensus 131 ~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~ 191 (463)
+-++++.+++.+++.++..++ +|||+|++. +|..+ .+.+..+|+ ++++++|++ ++
T Consensus 57 ~~~ll~gsGt~amEAav~sl~-~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p-~~v~~~L~~----~~ 130 (383)
T COG0075 57 DVVLLSGSGTLAMEAAVASLV-EPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDP-EEVEEALDK----DP 130 (383)
T ss_pred cEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCH-HHHHHHHhc----CC
Confidence 456677788999999999998 999999997 55555 556677999 999999995 23
Q ss_pred ceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC
Q 041151 192 TVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV 271 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 271 (463)
+.++|.+++.-.+||...+ +++|+++|++|+.++|+|.+-+.. +.+. .+ ++++-.+++.+.
T Consensus 131 ~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~g~l~iVDaVsS~G----g~~~-~v-----------d~wgiDv~itgS 191 (383)
T COG0075 131 DIKAVAVVHNETSTGVLNP---LKEIAKAAKEHGALLIVDAVSSLG----GEPL-KV-----------DEWGIDVAITGS 191 (383)
T ss_pred CccEEEEEeccCcccccCc---HHHHHHHHHHcCCEEEEEecccCC----Cccc-ch-----------hhcCccEEEecC
Confidence 6899999999999999976 788888999999999999987742 2221 22 556667999999
Q ss_pred CcccCCCCCceeEEEEecCCChhHHHHHHhh---------------h----hhcccCChHHHHHHHHhcCCCCCCCchHH
Q 041151 272 SKGYWGECGQRGGYFEMTNIPPKTVDEIYKI---------------A----SIALSPNVPAQIFMGLMVNPLKPGDISYE 332 (463)
Q Consensus 272 SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~---------------~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 332 (463)
.|++.++|| +|.+.+ +++..+++... + ...++++....+++..+|+
T Consensus 192 QK~l~~PPG--la~v~~---S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~---------- 256 (383)
T COG0075 192 QKALGAPPG--LAFVAV---SERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALD---------- 256 (383)
T ss_pred chhccCCCc--cceeEE---CHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH----------
Confidence 999988999 688875 77666665422 1 1245555555666666653
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHhhcCCCcccccCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCe
Q 041151 333 QFVRE-SKGILESLRRRARMMTDGFNSCRNVVCNFTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGI 408 (463)
Q Consensus 333 ~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI 408 (463)
..+++ ++...++++++.+++++.++++ |++..... ...... +..|.+. + +.+....+++++|+
T Consensus 257 ~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta--~~~P~g~---------~-~~~~~~~~~~~~g~ 323 (383)
T COG0075 257 LILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTA--IKVPEGV---------D-DKKVRRALLKEYGV 323 (383)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEE--EECCCCC---------C-cHHHHHHHHHhCCE
Confidence 34444 5778889999999999999998 88877622 111222 3455542 2 33344478888899
Q ss_pred EeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 409 STVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 409 ~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+.+|..--. + ..+||+.. .+.+++..++.+|..++.++..
T Consensus 324 ~i~gg~~~l~--g-kifRIGhMG~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 324 EIAGGQGPLK--G-KIFRIGHMGNVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred EecccccccC--c-cEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence 9977654322 2 37999998 7889999999999999887643
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.4e-16 Score=152.31 Aligned_cols=201 Identities=12% Similarity=0.143 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCceecCCCcc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTWKRQQIG 172 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~~~~~~~ 172 (463)
..|.+.|++..+ .+.++++++|+.|+..++.+++ ++||+|+++ .|+++ ..-..
T Consensus 58 ~~le~~la~Le~--------g~~a~~~~SGmaAi~~~l~~ll-~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v-~~~d~ 127 (386)
T PF01053_consen 58 RALEQRLAALEG--------GEDALLFSSGMAAISAALLALL-KPGDHIVASDDLYGGTYRLLEELLPRFGVEV-TFVDP 127 (386)
T ss_dssp HHHHHHHHHHHT---------SEEEEESSHHHHHHHHHHHHS--TTBEEEEESSSSHHHHHHHHHCHHHTTSEE-EEEST
T ss_pred HHHHHHHHHhhc--------ccceeeccchHHHHHHHHHhhc-ccCCceEecCCccCcchhhhhhhhcccCcEE-EEeCc
Confidence 456666666653 4788999999999999999998 899999997 33333 11112
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC-eEEEecccccccccCCCCCccchHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN-LVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~-~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
-|. +++++++++ ++++|++..|.||+..+.+ +++|+++|+++| +++++|+.++...+ ..+...
T Consensus 128 ~d~-~~l~~~l~~------~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~---~~pL~~--- 191 (386)
T PF01053_consen 128 TDL-EALEAALRP------NTKLVFLESPSNPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYN---QNPLEL--- 191 (386)
T ss_dssp TSH-HHHHHHHCT------TEEEEEEESSBTTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTT---C-GGGG---
T ss_pred hhH-HHHHhhccc------cceEEEEEcCCCccccccc---HHHHHHHHHHhCCceEEeeccccceee---eccCcC---
Confidence 467 999999998 8999999999999988765 888888999998 99999999976432 111111
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC-hhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP-PKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
+. .|++.|.||.++|....-.|.+++ .+ .++.+.++.... .....++.....+..-++
T Consensus 192 --------Ga---Divv~S~TKyl~Ghsdv~~G~vv~--~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~------- 251 (386)
T PF01053_consen 192 --------GA---DIVVHSATKYLSGHSDVMGGAVVV--NGSSELYDRLREFRRLLGATLSPFDAWLLLRGLR------- 251 (386)
T ss_dssp --------T----SEEEEETTTTTTTSSSE-EEEEEE--SSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHT-------
T ss_pred --------Cc---eEEEeeccccccCCcceeeEEEEE--CchhhhhhhhcchhhhcCccchHHHHHHHhcCCC-------
Confidence 22 389999999997666666888886 34 578888876665 344444444444444432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.+.-+.++..++...+.+.|++.|.+.
T Consensus 252 -------Tl~~R~~~~~~nA~~lA~~L~~hp~V~ 278 (386)
T PF01053_consen 252 -------TLPLRMERQNENAEALAEFLEEHPKVK 278 (386)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 233456667888889999999887654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-15 Score=156.20 Aligned_cols=307 Identities=11% Similarity=0.037 Sum_probs=189.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC---CCC---CHH----HHHHHHHHHHHhcCCCCCCCcEEEc---CCcHHHHHHHHH
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD---SRG---IPG----VRKEVAEFIERRDGYPSDPELIFLT---DGASKGVMQTLN 148 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~---~~g---~~~----lr~~ia~~~~~~~g~~~~~~~i~~t---~G~~~al~~~~~ 148 (463)
++.+++++...+.+.. ..+|+. ..| ... .|+.++++++ .+++++.++ +|+++++..++.
T Consensus 47 s~~v~~~~~~~l~~~y--~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~------a~~~~~~~~~~~~sgt~an~~v~~ 118 (452)
T PTZ00094 47 SRAVLECLGSCFTNKY--AEGLPGNRYYGGNEVVDKIENLCQKRALEAFG------LDPEEWGVNVQPYSGSPANFAVYT 118 (452)
T ss_pred CHHHHHHhcchhhccc--cCCCCCccccccchHHHHHHHHHHHHHHHHhC------CCcccceeecCCCchHHHHHHHHH
Confidence 7888888887775421 012221 112 122 3446666665 566777666 788999999999
Q ss_pred HHhcCCCCEEEEc---cCcee------------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECC
Q 041151 149 CVIRGEGDGVVLL---FHTTW------------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINP 201 (463)
Q Consensus 149 ~l~~~~gd~Vlvp---~g~~~------------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p 201 (463)
+++ ++||+|++. +|+.+ ....+.+|. ++|++.++.. ++++|++.+
T Consensus 119 al~-~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~-~~L~~~l~~~-----~~~lvi~~~- 190 (452)
T PTZ00094 119 ALL-QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDY-DKLEELAKAF-----RPKLIIAGA- 190 (452)
T ss_pred Hhc-CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCH-HHHHHHHHHh-----CCCEEEEeC-
Confidence 998 899999995 22211 122366899 9999999754 677776543
Q ss_pred CCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCc
Q 041151 202 GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQ 281 (463)
Q Consensus 202 ~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~ 281 (463)
+.+|...+ +++|.++|+++|+++++|++++......+....++ . +-.+++.|.+|++. |-
T Consensus 191 -s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~-----------~--~~D~l~~S~hK~l~---GP 250 (452)
T PTZ00094 191 -SAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPF-----------P--YADVVTTTTHKSLR---GP 250 (452)
T ss_pred -CCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCC-----------C--CCcEEEcCCccCCC---CC
Confidence 34888888 66667788899999999999987655211111111 1 12478999999884 34
Q ss_pred eeEEEEecCCChhHHHHHHhhh-----h-hcccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHH
Q 041151 282 RGGYFEMTNIPPKTVDEIYKIA-----S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTD 354 (463)
Q Consensus 282 R~G~~~~~~~~~~~~~~l~~~~-----~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 354 (463)
+.|++++ ++++.+.+.... . ...+++.....++.++++ ... ...+..++++.++.+++.+
T Consensus 251 ~Gg~l~~---~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~----------~~~~~~~~~~~~~i~~l~~~l~~ 317 (452)
T PTZ00094 251 RSGLIFY---RKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLK----------EVQSPEWKEYAKQVLKNAKALAA 317 (452)
T ss_pred CceEEEE---ecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHH----------HHhChhHHHHHHHHHHHHHHHHH
Confidence 4588875 444444332221 1 111233333333333432 121 1234567788889999999
Q ss_pred HhhcCCCcccccCCc-eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee-CCCCCCCC-CCCcEEEEEec-
Q 041151 355 GFNSCRNVVCNFTEG-AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV-PGSGFGQK-EGIFHLRTTIL- 430 (463)
Q Consensus 355 ~L~~~pg~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~-pg~~f~~~-~~~~~lRis~~- 430 (463)
.|.+. |+.+..+.. ....++.+..+. -+...+..+|+++||.+. ++..+... ...+++|+|+.
T Consensus 318 ~L~~~-g~~v~~~~~~~~~~~v~~~~~~------------~~~~~~~~~L~~~gI~vs~~~~p~~~~~~~~~~vRis~~~ 384 (452)
T PTZ00094 318 ALEKR-GYDLVTGGTDNHLVLVDLRPFG------------ITGSKMEKLLDAVNISVNKNTIPGDKSALNPSGVRLGTPA 384 (452)
T ss_pred HHHhC-CcEEecCCCCCceEeecCCcCC------------CCHHHHHHHHHHCCcEEecccCCCCCcCCCCCeEEECCHH
Confidence 99886 777654321 223343343221 133456677888999994 44433311 12358999997
Q ss_pred -CC----cCcHHHHHHHHHHHHHHH
Q 041151 431 -PA----EEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 -~~----~e~i~~~~~~l~~~l~~~ 450 (463)
++ ++|++++++.|++++...
T Consensus 385 ~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 385 LTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 44 899999999999988753
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-16 Score=151.88 Aligned_cols=306 Identities=14% Similarity=0.137 Sum_probs=201.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--C-CC-CE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--G-EG-DG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~-~g-d~ 157 (463)
+|.+++++++.+.........|. .+.+.++++.+.+..+ ..+.|++.|+++||++.+++.--+ . ++ .+
T Consensus 60 hP~iv~al~~Q~~kl~h~sn~~~-----~~~~~~la~~L~~~s~---~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~ 131 (404)
T COG4992 60 HPALVEALKEQAEKLWHVSNLFY-----NEPQAELAEKLVELSP---FADRVFFCNSGAEANEAALKLARKYTGDPEKSK 131 (404)
T ss_pred CHHHHHHHHHHHHHhhhcccccC-----ChHHHHHHHHHHhhCc---cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcE
Confidence 88999999887776322222332 2455566666654311 278999999999999999997531 2 22 24
Q ss_pred EEEc----cCcee----------cCCCcc-----------cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC-H
Q 041151 158 VVLL----FHTTW----------KRQQIG-----------VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS-E 211 (463)
Q Consensus 158 Vlvp----~g~~~----------~~~~~~-----------~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s-~ 211 (463)
|+.. +|.+. ....|. =|+ +++++++++ ++.+|++.--+--.|.+.+ .
T Consensus 132 Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi-~al~~ai~~------~taAvivEPIQGEgGV~~~~~ 204 (404)
T COG4992 132 IIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDI-EALEAAIDE------DTAAVIVEPIQGEGGVIPAPP 204 (404)
T ss_pred EEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCH-HHHHHHhcc------CeEEEEEecccCCCCCCCCCH
Confidence 4443 33332 111121 177 999999998 8999988866777776654 4
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 291 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 291 (463)
+-++++-++|++||+++|.||+...+.-+ ..+.+. .++++ .. -|.++.|.+ | .|+.+|.++.
T Consensus 205 ~fl~~lr~lCd~~g~LLI~DEVQtG~GRT-----Gk~fA~-e~~gV--~P-----DI~tlaK~L-g-GG~PigA~la--- 266 (404)
T COG4992 205 EFLKALRELCDEHGALLILDEVQTGLGRT-----GKLFAY-EHYGV--EP-----DILTLAKAL-G-GGFPIGAMLA--- 266 (404)
T ss_pred HHHHHHHHHHHHhCeEEEEeccccCCCcc-----chHHHH-HHhCC--CC-----CEEEeeccc-c-CCccceeeEE---
Confidence 56899999999999999999999875331 233332 22222 22 235788999 5 6899999994
Q ss_pred ChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC---ccccc
Q 041151 292 PPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC-RN---VVCNF 366 (463)
Q Consensus 292 ~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-pg---~~~~~ 366 (463)
++...+.+..-.. .+++.++++..++.+.|+ .+. .+++.++.+++-+++.+.|+++ .. ++-+.
T Consensus 267 ~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~-----------~l~-~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vR 334 (404)
T COG4992 267 TEEIASAFTPGDHGSTFGGNPLACAVALAVLE-----------VLL-EEGLLENVREKGEYLLQRLRELKRRYPLVKEVR 334 (404)
T ss_pred chhhhhcCCCCcccCCCCcCHHHHHHHHHHHH-----------HHc-chhHHHHHHHHHHHHHHHHHHHhhcCCceeeee
Confidence 5544555544332 578999999999988874 222 2346666777777888888774 11 22222
Q ss_pred CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHH
Q 041151 367 TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~ 444 (463)
.. |+++= +++.... ...++ ...+.++|+++.+. +.+.+|+... .+++++++++++|.
T Consensus 335 G~-GLmiG--iel~~~~----------~a~~~-~~~~~~~gvL~~~a-------~~~ViR~~PpL~i~~eei~~~~~~l~ 393 (404)
T COG4992 335 GR-GLMIG--IELKEPY----------RARDI-VRALREEGVLVLPA-------GPNVIRFLPPLVITEEEIDEALDALE 393 (404)
T ss_pred cc-eeEEE--EEecCcc----------cHHHH-HHHHHHCCeEEecC-------CCCeEEecCCccCCHHHHHHHHHHHH
Confidence 22 33333 4432210 12444 45677889999883 3447999999 79999999999999
Q ss_pred HHHHHHHHH
Q 041151 445 KFNDEFMEQ 453 (463)
Q Consensus 445 ~~l~~~~~~ 453 (463)
+++++....
T Consensus 394 ~~l~~~~~~ 402 (404)
T COG4992 394 RALAAASAR 402 (404)
T ss_pred HHHHHhhhc
Confidence 999876543
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-16 Score=156.72 Aligned_cols=320 Identities=11% Similarity=0.062 Sum_probs=184.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEE-cCCcHHHHHHHHHHHhcCCC-CEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFL-TDGASKGVMQTLNCVIRGEG-DGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~-t~G~~~al~~~~~~l~~~~g-d~V 158 (463)
++.+.+++.+.+.... ..+.. .-..+.+.++++.+.+....+-..+ .+++ ++++++|+..+++....-.| .+|
T Consensus 57 ~p~v~~ai~~ql~~~~-~~~~~---~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~i 132 (425)
T PRK09264 57 NPVLKQALIDYLQRDG-ITHGL---DMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNI 132 (425)
T ss_pred CHHHHHHHHHHHHhcc-ccccc---ccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeE
Confidence 7789999988877521 11111 1123455556665543211111112 5656 58999999999987631223 455
Q ss_pred EEc----cCcee-------------------------cCCCc---c-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCC
Q 041151 159 VLL----FHTTW-------------------------KRQQI---G-VLIINDLQQSVAQARSKGITVRAMVIINPGNPT 205 (463)
Q Consensus 159 lvp----~g~~~-------------------------~~~~~---~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt 205 (463)
+.- +|... +.... . -|+ +.+++.+++......++.+|++.--..-.
T Consensus 133 i~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~aavi~Epv~g~~ 211 (425)
T PRK09264 133 VAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTL-AYLEKLLEDSSSGVDLPAAVIVETVQGEG 211 (425)
T ss_pred EEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHH-HHHHHHHHhccCCCCceEEEEEecccCCC
Confidence 553 22211 00000 0 155 78888886531111246677666444445
Q ss_pred cc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeE
Q 041151 206 GQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG 284 (463)
Q Consensus 206 G~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 284 (463)
|. +++.+.+++|.++|++||+++|+||++..+... + ..... ..+++ ..+ +.++||.+ +..|+++|
T Consensus 212 G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~Grt-G----~~~~~-~~~~v--~PD-----i~t~~K~l-~~~G~pig 277 (425)
T PRK09264 212 GINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRT-G----TFFSF-ERAGI--TPD-----IVTLSKSI-SGYGLPMA 277 (425)
T ss_pred CCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccc-c----HHHHH-hhcCC--CCC-----EEEecccc-CCCccceE
Confidence 65 678899999999999999999999999864321 1 11111 11211 221 24779999 65599999
Q ss_pred EEEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----C
Q 041151 285 YFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----C 359 (463)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 359 (463)
++++ ++++ ..+.... ..+++.++++..++.+.++ ... ...++.++.+++.+++.+.|++ .
T Consensus 278 av~~---~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~----------~~~-~~~~l~~~~~~~g~~l~~~l~~l~~~~ 342 (425)
T PRK09264 278 LVLI---KPEL-DVWKPGEHNGTFRGNNLAFVTATAALE----------EYW-SDDAFEKEVKAKGELVRERLEEIAAKY 342 (425)
T ss_pred EEEE---chhh-hccCCCccCCCCCCCHHHHHHHHHHHH----------HHH-hhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9995 6665 3433222 2356667777666655542 111 1123455556666666665544 3
Q ss_pred CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHH
Q 041151 360 RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMP 437 (463)
Q Consensus 360 pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~ 437 (463)
|.+.......|++.++.+. ... ....+...+.++||.+.++..++ ..||+++. .++++++
T Consensus 343 ~~~~~~vrg~Gl~~~i~l~--~~~-----------~~~~l~~~~~~~Gv~~~~~~~~~-----~~lr~~p~l~~t~~ei~ 404 (425)
T PRK09264 343 PGLGAEVRGRGMMQGIDFG--DGE-----------LAGKIAAEAFENGLIIETSGPED-----EVVKLLPPLTIDEEELE 404 (425)
T ss_pred CCceecceecccEEEEEec--ChH-----------HHHHHHHHHHHCCCEEeccCCCC-----CEEEEeCCCCCCHHHHH
Confidence 3221122334666675443 211 12233455677899998854332 36899977 8899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 041151 438 AIMESFKKFNDEFMEQ 453 (463)
Q Consensus 438 ~~~~~l~~~l~~~~~~ 453 (463)
+++++|.++++++.++
T Consensus 405 ~~~~~l~~~l~~~~~~ 420 (425)
T PRK09264 405 EGLDILEEAVAEVLAE 420 (425)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887543
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-16 Score=141.93 Aligned_cols=307 Identities=14% Similarity=0.164 Sum_probs=203.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
..++.+++.++... ....++.+ ....|.+.+|+.++ +....++++|++..+..+...+- ++|..|++.
T Consensus 35 TdeMr~am~eA~vg--DdVyGeD~--tt~rLE~~vA~l~G-------KEAgLFv~SGTmgNllaIm~Hc~-~rg~eii~g 102 (384)
T KOG1368|consen 35 TDEMRRAMAEASVG--DDVYGEDP--TTNRLEQRVAELFG-------KEAGLFVPSGTMGNLLAIMVHCH-QRGSEIIVG 102 (384)
T ss_pred hHHHHHHHhhcccC--cccccCCc--cHHHHHHHHHHHhC-------ccceeeecccccccHHHHHHHhc-CCCceEEec
Confidence 35666666665543 24444444 45899999999986 33478888887766666666665 799999996
Q ss_pred ----------------cCcee----cCCCcccChHHHHHHHHHHHHh--cCCceeEEEEECCCCCCc-cCCCHHHHHHHH
Q 041151 162 ----------------FHTTW----KRQQIGVLIINDLQQSVAQARS--KGITVRAMVIINPGNPTG-QCLSEANLREIL 218 (463)
Q Consensus 162 ----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~--~~~~~~~i~l~~p~NPtG-~~~s~~~l~~l~ 218 (463)
.|+.+ ++++..+|+ +++|+++..... -.+.+++|.+.|-+|-+| .++|.|++.++.
T Consensus 103 d~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~l-edIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~ 181 (384)
T KOG1368|consen 103 DRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDL-EDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVK 181 (384)
T ss_pred cchheeehhccChhhhccceeEeeeeCCCCeeeH-HHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHH
Confidence 33333 778888999 999999984211 135789999998877777 999999999999
Q ss_pred HHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 219 RFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
+||+++++.+-.|-+--+-. .-....++..++..+ |. +--.+||.+ |..+|.+++ |+++++++
T Consensus 182 ~lak~~glkLH~DGARi~NA--avasgV~vk~i~~~f----DS-----VsiCLSKgl----gAPVGSViV--G~k~FI~k 244 (384)
T KOG1368|consen 182 ALAKRHGLKLHMDGARIFNA--AVASGVPVKKICSAF----DS-----VSICLSKGL----GAPVGSVIV--GSKDFIDK 244 (384)
T ss_pred HHHhccCCeeecchhhhhhH--HHHcCCCHHHHHHhh----hh-----hhhhhhccC----CCCcccEEE--ccHHHHHH
Confidence 99999999999998753211 012234555555444 22 224589987 456899998 99999998
Q ss_pred HHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC--CceeEEee
Q 041151 299 IYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT--EGAMYSFP 375 (463)
Q Consensus 299 l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~--~g~~~~~~ 375 (463)
.+..+. ...+.-.....++++++. +.+.....+.-.++...+.+.++..+++++..| +.++...
T Consensus 245 A~~~RKalGGGmRQsGvLaaaaLva------------l~~~~~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~- 311 (384)
T KOG1368|consen 245 ARHFRKALGGGMRQSGVLAAAALVA------------LDENVPLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNM- 311 (384)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHH------------hhcchHHHHHHHHHHHHHHHHhccccceeeecchhhcceeee-
Confidence 876664 333333344444444332 111111333345566677788887766777655 4444332
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHH-HHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESF-KKFNDEF 450 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l-~~~l~~~ 450 (463)
.+.-+. .+...+ .+.++++||.+.+|..+ .+||.+. .++++++..+..+ +.++..+
T Consensus 312 ~l~q~~-----------~~~~~l-~~~~~k~gi~lm~~~s~-------r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q~ 370 (384)
T KOG1368|consen 312 VLCQAR-----------LTAEEL-CKFLEKNGILLMGGASR-------RIRIVLHHQVTDEDVEYVKSVLSKKFLKQL 370 (384)
T ss_pred eccccc-----------CCHHHH-HHHHHHCCeEEeecccc-------ceEEEEEEecCHHHHHHHHHHHHHHHHhhc
Confidence 222221 123444 45678999999997654 3799998 7889999999999 4444443
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-15 Score=151.35 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=125.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--------c
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--------R 152 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--------~ 152 (463)
++...++++.+.+.. ....+++. ..+|++++|++++ .+.+++++|+++++..++.+++ .
T Consensus 42 ~~~~~~~a~~~~~~~---~~~~~G~~--~~~fe~~lA~~~g--------~~~~v~~~sGt~al~~aL~al~~~~~~~~~~ 108 (438)
T PRK15407 42 IDAKELQNLVDASLD---FWLTTGRF--NDAFEKKLAEFLG--------VRYALLVNSGSSANLLAFSALTSPKLGDRAL 108 (438)
T ss_pred CCHHHHHHHHHHHHh---CcccCChh--HHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHhhccccccCC
Confidence 466666777665554 22333332 4789999999985 2468899999999999998761 1
Q ss_pred CCCCEEEEc-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 153 GEGDGVVLL-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 153 ~~gd~Vlvp-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
+|||+|++| .|.++ ....+.+|+ +.+++.+.+ ++++|+++++ +|.. .++
T Consensus 109 ~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~-~~le~~i~~------~tkaVi~~~~---~G~p---~dl 175 (438)
T PRK15407 109 KPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDA-SLLEAAVSP------KTKAIMIAHT---LGNP---FDL 175 (438)
T ss_pred CCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCH-HHHHHHcCc------CCeEEEEeCC---CCCh---hhH
Confidence 789999997 56665 224688999 999999876 8999998864 3443 357
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCC
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~ 292 (463)
++|.++|++++++||+|++|+......+....++ . .+.+.||+ |.+ . ....|++++ .+
T Consensus 176 ~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~-----------g----d~~~fSf~~~k~~-~--~geGG~l~t--~d 235 (438)
T PRK15407 176 AAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTF-----------G----DIATLSFYPAHHI-T--MGEGGAVFT--ND 235 (438)
T ss_pred HHHHHHHHHCCCEEEEECccchhhhcCCeeeecc-----------C----ceEEEeCCCCCCc-c--ccCceEEEE--CC
Confidence 8889999999999999999987543233222222 1 25566665 555 2 233699987 67
Q ss_pred hhHHHHHHhhhh
Q 041151 293 PKTVDEIYKIAS 304 (463)
Q Consensus 293 ~~~~~~l~~~~~ 304 (463)
+++.++++.+..
T Consensus 236 ~~l~~~~~~~~~ 247 (438)
T PRK15407 236 PLLKKIIESFRD 247 (438)
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=154.18 Aligned_cols=172 Identities=22% Similarity=0.251 Sum_probs=136.9
Q ss_pred cHHHHHHHHHHhhhcCC--CCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC-
Q 041151 82 PADAIARAKHYLSLTSG--GLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD- 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~--~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd- 156 (463)
|+.+++++...+....+ ....|+. ..+....|+.||++++ .++.+|++|+|+|++++++++.+.+.+++
T Consensus 56 ~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklIn------Ad~~dIiFts~ATEs~Nlvl~~v~~~~~~~ 129 (428)
T KOG1549|consen 56 DPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLIN------ADPSDIVFTSGATESNNLVLKGVARFFGDK 129 (428)
T ss_pred CHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhC------CCCCcEEEeCCchHHHHHHHHHhhcccccc
Confidence 89999999887665322 2223444 3346789999999998 77888999999999999999998755566
Q ss_pred ---EEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 157 ---GVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 157 ---~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+|++. .|..+ ......+|. +.+++.+++ +|+++.+...||-+|++++
T Consensus 130 ~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~-~~~~~~i~~------~T~lv~I~~Vnn~~gv~~P--- 199 (428)
T KOG1549|consen 130 TKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDI-SKLREAIRS------KTRLVSIMHVNNEIGVLQP--- 199 (428)
T ss_pred ccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccH-HHHHHhcCC------CceEEEEEecccCcccccc---
Confidence 77774 55544 346677888 999999998 8999999999999999999
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
+++|.++|+++++.+++|.+++.. +.+..+..+- -.++..|.+|++ |++| +|++++
T Consensus 200 v~EI~~icr~~~v~v~~DaAQavG-----~i~vDV~eln-----------~D~~s~s~HK~y-gp~~--iGaLYv 255 (428)
T KOG1549|consen 200 VKEIVKICREEGVQVHVDAAQAVG-----KIPVDVQELN-----------ADFLSISAHKIY-GPPG--IGALYV 255 (428)
T ss_pred HHHHHHHhCcCCcEEEeehhhhcC-----CccccHHHcC-----------chheeeeccccc-CCCc--ceEEEE
Confidence 777888999999999999999862 3345555442 236778999988 9999 999997
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-16 Score=145.31 Aligned_cols=300 Identities=15% Similarity=0.101 Sum_probs=196.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
..+.+++++.++-.. ....|+...-...+.+.+++.++ .+.+++++++|++..+++.+.+ +||+.|++
T Consensus 12 ~~~~m~eam~~a~~~---~~~~YG~D~~~~~~e~~~ae~~g--------~~a~~Fv~sGT~aN~lal~~~~-~~~~~vi~ 79 (342)
T COG2008 12 PTPEMREALAAANAV---GDDVYGEDPTTNALEQRIAELFG--------KEAALFVPSGTQANQLALAAHC-QPGESVIC 79 (342)
T ss_pred CCHHHHHHHHhcccc---CCCCCCCCHHHHHHHHHHHHHhC--------CceEEEecCccHHHHHHHHHhc-CCCCeEEE
Confidence 378888888765422 33567766555566666666653 3889999999999999999998 89999999
Q ss_pred c-----------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 161 L-----------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 161 p-----------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
. .|.+. +..+..+++ +.++..+...+..-..+..+++.+.+|--|.++|.+++++|.++
T Consensus 80 ~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~-e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~ 158 (342)
T COG2008 80 HETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTP-EDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAV 158 (342)
T ss_pred eccccceecccCcHHHHcCCceeccCCCCCCCcCH-HHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHH
Confidence 6 11222 456788999 99999888621111234555555555578999999999999999
Q ss_pred hhhCCeEEEecccccc--cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 221 CYQENLVLLGDEVYQQ--NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 221 a~~~~~~vi~Deay~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
|+++++.|..|-+=-. +.. .+ ++...+...+ .++..++||.. |+.+|.+++ ++.++++.
T Consensus 159 ~k~~~l~LHmDGAR~~nA~va-lg---~~~~~~~~~~---------D~v~~~~tK~g----~~~~gAiv~--gn~~~~~~ 219 (342)
T COG2008 159 CKEHGLPLHMDGARLANALVA-LG---VALKTIKSYV---------DSVSFCLTKGG----GAPVGAIVF--GNRDFAKR 219 (342)
T ss_pred HHHhCCceeechHHHHHHHHH-cC---CCHHHHHhhC---------CEEEEecccCC----cceeeeEEE--cCHHHHHH
Confidence 9999999999976321 111 11 3444443222 35678899975 555788888 89999999
Q ss_pred HHhhhh---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH--HHHHHHHhhcCCCcccccC-CceeE
Q 041151 299 IYKIAS---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRR--ARMMTDGFNSCRNVVCNFT-EGAMY 372 (463)
Q Consensus 299 l~~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~L~~~pg~~~~~~-~g~~~ 372 (463)
+...+. ..+.-+.+.-+....+|++ .. .+.....++ ...|.+.|+..||+++..| +.++
T Consensus 220 a~~~rK~~Ggl~~k~r~laA~~~~~l~~-----~~---------~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~- 284 (342)
T COG2008 220 ARRWRKRAGGLMRKARFLAAQGLYALED-----DV---------WRLAADHANAMAARLAEGLEAKPGVKLAFPVETNM- 284 (342)
T ss_pred HHHHHHHhcccHhhhhHHHHHHHHHHhc-----cH---------HHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccE-
Confidence 877654 2333344444444444431 11 122233444 7788888998889998775 5554
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
+++ .+|...+ +.......+...|+.+.+++ ..+|+.++ .+++++++++..+++++
T Consensus 285 vf~--~l~~~~i----------~~l~~~~~~~~~~~~~~~~~--------~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 285 VFV--RLPESAI----------EALRLAGALFYRGVLIGAHG--------EIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred EEE--ECChHHH----------HHHHhhchhheeeeeccCCC--------ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 443 3443211 11112223444455554432 25899888 88999999999888764
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-16 Score=155.28 Aligned_cols=318 Identities=13% Similarity=0.053 Sum_probs=180.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCC-CCCcEEE-cCCcHHHHHHHHHHHhcCCC-CEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS-DPELIFL-TDGASKGVMQTLNCVIRGEG-DGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~-~~~~i~~-t~G~~~al~~~~~~l~~~~g-d~V 158 (463)
++.+.+++.+.+.+.. .. .. .....+.+..+++.+.+....+- ..+.+++ ++++++++..+++....-.| .+|
T Consensus 53 ~p~v~~ai~~ql~~~~-~~--~~-~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~i 128 (412)
T TIGR02407 53 NPKLKQALIDYLADDG-II--HS-LDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNV 128 (412)
T ss_pred CHHHHHHHHHHHhhcc-ce--ec-cccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeE
Confidence 7889999988887521 11 11 11123555566666643211010 1124655 58999999999997631123 455
Q ss_pred EEc----cCcee----------cCCCcc-------------------cChHHHHHHHHHHHHhcCCceeEEEEECCCCCC
Q 041151 159 VLL----FHTTW----------KRQQIG-------------------VLIINDLQQSVAQARSKGITVRAMVIINPGNPT 205 (463)
Q Consensus 159 lvp----~g~~~----------~~~~~~-------------------~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt 205 (463)
+.- +|... ....++ -++ +.+++.+.+......++.+|++.--.++.
T Consensus 129 i~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~aavi~Epi~g~~ 207 (412)
T TIGR02407 129 VSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTI-AYFEKLLEDSSSGVDLPAAVILETVQGEG 207 (412)
T ss_pred EEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHH-HHHHHHHHhccCCCCceEEEEeccccCCC
Confidence 553 22211 000000 125 77888776421111256777766557778
Q ss_pred cc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeE
Q 041151 206 GQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG 284 (463)
Q Consensus 206 G~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 284 (463)
|. ..+.+.+++|.++|++||+++|+||++..+.-.+ ..... ..+++ ..+ +.++||++ +..|+++|
T Consensus 208 G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG-----~~~a~-~~~~v--~PD-----i~~~~K~l-g~~G~pig 273 (412)
T TIGR02407 208 GINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG-----TFFSF-EPAGI--EPD-----IVCLSKSI-SGYGLPLA 273 (412)
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccc-----hhHHh-cccCC--CCC-----EEEechhc-cCCcccee
Confidence 87 5788999999999999999999999998642111 11110 01111 221 23689999 53399999
Q ss_pred EEEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 285 YFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNP-LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
++++ ++++ +.+.... ..+++.+++...++.+.++. .. ++. ..+..+++.+.++++.+.+.+. +|++
T Consensus 274 av~~---~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~--~~~---l~~~~~~~g~~l~~~l~~l~~~---~~~~ 341 (412)
T TIGR02407 274 LTLI---KPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWS--DDA---FEKAVQRKSEIIQERLDRIVAE---YPEL 341 (412)
T ss_pred EEEE---chhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhc--ccH---HHHHHHHHHHHHHHHHHHHHhh---CCCc
Confidence 9994 6665 5443222 24666777766665555421 00 011 1222222333333333333222 3333
Q ss_pred ccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHH
Q 041151 363 VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIM 440 (463)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~ 440 (463)
.......|+++|+.+. ... ....+...+.++||.+.+...+ .+.+|++.+ .+++++++++
T Consensus 342 ~~~vrg~Gl~~~l~l~--~~~-----------~~~~~~~~~~~~Gv~v~~~~~~-----~~~lr~~p~l~~t~~~i~~~~ 403 (412)
T TIGR02407 342 IKQVRGRGLMQGIECG--DGD-----------LAGKIAKAAFENGLIIETSGPN-----DEVIKLLPPLTIDEETLQQGL 403 (412)
T ss_pred eEeeecceeEEEEEec--ChH-----------HHHHHHHHHHHCCCEEeccCCC-----CCEEEEECCCCCCHHHHHHHH
Confidence 3344456788885543 221 2233445567889999874322 236999999 8999999999
Q ss_pred HHHHHHHH
Q 041151 441 ESFKKFND 448 (463)
Q Consensus 441 ~~l~~~l~ 448 (463)
++|.++++
T Consensus 404 ~~l~~~l~ 411 (412)
T TIGR02407 404 DILEQAVE 411 (412)
T ss_pred HHHHHHHh
Confidence 99999875
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-15 Score=155.26 Aligned_cols=317 Identities=14% Similarity=0.069 Sum_probs=189.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+++.+. ..+.......+.+.++++.+.+..... ..+.+++++++++|+..+++.... ...++|+.
T Consensus 74 ~p~v~~ai~~q~~~~----~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~ 148 (443)
T PRK06058 74 APRVVEAVREQVARF----THTCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSALFNSGAEAVENAVKIARSYTGRQAVVV 148 (443)
T ss_pred CHHHHHHHHHHHHhc----cCccccccCCHHHHHHHHHHHHhCCCC-CCCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 788999999888762 122222223466677777776543211 124788999999999999984320 12356665
Q ss_pred c----cCcee--------------------------c-CCCccc------ChHHHHHHHHHHHHh--cCCceeEEEEECC
Q 041151 161 L----FHTTW--------------------------K-RQQIGV------LIINDLQQSVAQARS--KGITVRAMVIINP 201 (463)
Q Consensus 161 p----~g~~~--------------------------~-~~~~~~------d~~~~l~~~l~~~~~--~~~~~~~i~l~~p 201 (463)
. +|... + ...+.. +.-+.+++.+....+ ...++.+|+ ..|
T Consensus 149 ~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi-~EP 227 (443)
T PRK06058 149 FDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVI-IEP 227 (443)
T ss_pred ECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEE-ECC
Confidence 4 22211 0 000100 000111111111000 012566665 566
Q ss_pred CCCCc-cC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC
Q 041151 202 GNPTG-QC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC 279 (463)
Q Consensus 202 ~NPtG-~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~ 279 (463)
.+..| .+ .+.+.+++|.++|++||+++|.||++..+... +.. +.. ..+++ ..+ + .+++|.+ + .
T Consensus 228 i~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRt-G~~---fa~--~~~gv--~PD---i--v~~gK~l-~-~ 292 (443)
T PRK06058 228 IQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFART-GAW---FAC--EHEGI--VPD---L--ITTAKGI-A-G 292 (443)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-hhh---hHH--HhcCC--CCC---E--EEEcccc-c-C
Confidence 66655 33 45778999999999999999999999876431 111 111 11211 221 2 3458999 6 7
Q ss_pred CceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041151 280 GQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS 358 (463)
Q Consensus 280 G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 358 (463)
|+++|+++ +++++.+.+..... .+++.+++++.++.+.|+ .++ .+++.++.+++.+++.+.|++
T Consensus 293 G~Pi~av~---~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~~~-~~~l~~~~~~~g~~l~~~L~~ 357 (443)
T PRK06058 293 GLPLSAVT---GRAEIMDAPHPGGLGGTYGGNPVACAAALAAIE-----------TIE-EDDLVARARQIEALMTDRLRA 357 (443)
T ss_pred CCccEEEE---EcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHH-----------HHH-HcCHHHHHHHHHHHHHHHHHH
Confidence 99999999 58888888765433 578889999999988874 222 124566677777777777766
Q ss_pred C----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh---HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 359 C----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD---VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 359 ~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
+ +.+.-+.+.|.++.+.-..-+.. .++ ...+...+.++||.+.++..|+ +++|+..+
T Consensus 358 l~~~~~~i~~vrg~G~~~~i~~~~~~~~----------~~~~~~~~~l~~~~~~~Gv~~~~~~~~~-----~~lr~~Ppl 422 (443)
T PRK06058 358 LAAEDDRIGDVRGRGAMIAIELVKPGTT----------EPDAELTKALAAAAHAAGVIVLTCGTYG-----NVIRLLPPL 422 (443)
T ss_pred HHhhCCcEEeeeccceEEEEEEecCCCC----------CCcHHHHHHHHHHHHHCCeEEeccCCCC-----CEEEEECCC
Confidence 3 22222456676665421111000 011 1223344567899999876554 27999766
Q ss_pred -CCcCcHHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++++++++++|.+++++
T Consensus 423 ~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 423 VIGDELLREGLDVLEAALAD 442 (443)
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999865
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=154.83 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----c--CC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----K--RQ 169 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~--~~ 169 (463)
+.++++.+|++++ . .+.+++|+|+++++..++.+++ +|||+|+++ .|+++ + ..
T Consensus 61 i~~~~~~~A~~~g------a-~~~~~~~~Gst~a~~~~l~al~-~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~ 132 (294)
T cd00615 61 IKEAQELAARAFG------A-KHTFFLVNGTSSSNKAVILAVC-GPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP 132 (294)
T ss_pred HHHHHHHHHHHhC------C-CCEEEEcCcHHHHHHHHHHHcC-CCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCc
Confidence 6788899999885 2 2455569999999999999998 899999997 55554 2 12
Q ss_pred C----cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc-ccCCCCC
Q 041151 170 Q----IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN-IYQDERP 244 (463)
Q Consensus 170 ~----~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~-~~~~~~~ 244 (463)
. ..+|+ +.+++++++ .+++++|++++| ||||.+++ +++|+++|+++|++||+||+|... .|. +..
T Consensus 133 ~~~~~~~i~~-~~l~~~l~~----~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~-~~~ 202 (294)
T cd00615 133 YYGIAGGIPP-ETFKKALIE----HPDAKAAVITNP-TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFH-PIL 202 (294)
T ss_pred ccCcCCCCCH-HHHHHHHHh----CCCceEEEEECC-CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccC-ccc
Confidence 2 37899 999999875 126899999999 78999987 778888999999999999999753 342 211
Q ss_pred ccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcC
Q 041151 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVN 322 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~ 322 (463)
+.+. ...+..+++.|++|++ +|++.|+++..+......+++..... .+.+++.+...++..++.
T Consensus 203 ~~~~-----------~~~~~div~~S~hK~l---~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~ 268 (294)
T cd00615 203 PSSA-----------AMAGADIVVQSTHKTL---PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARA 268 (294)
T ss_pred Ccch-----------hhcCCcEEEEchhccc---chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHH
Confidence 1122 1123569999999987 57776555431111112334443332 123333333333333321
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 323 PLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
....+.++..+++.++.+.+++.|+
T Consensus 269 ----------~~~~~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 269 ----------MMALEGKELVEELIELALYARQEIN 293 (294)
T ss_pred ----------HHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 1122233455566666667776664
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=152.78 Aligned_cols=300 Identities=12% Similarity=0.075 Sum_probs=186.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----CCC-
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----GEG- 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~~g- 155 (463)
++.+.+++.+.+.+. .+.+. ....++..++++++.+. ...+.+++++++++|+..+++.... ++|
T Consensus 54 ~p~v~~a~~~q~~~~---~~~~~--~~~~~~~~~la~~l~~~----~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r 124 (395)
T PRK03715 54 NPGMVEALAAQAEKL---INPSP--AFYNEPMAKLAGLLTQH----SCFDKVFFANSGAEANEGAIKLARKWGRKHKNGA 124 (395)
T ss_pred CHHHHHHHHHHHHhc---ccccc--cccCHHHHHHHHHHhhc----cCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCC
Confidence 678899998887752 12222 23456788889988643 2246899999999999999998741 123
Q ss_pred CEEEEc----cCcee----------------c-CCCc----ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC-
Q 041151 156 DGVVLL----FHTTW----------------K-RQQI----GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL- 209 (463)
Q Consensus 156 d~Vlvp----~g~~~----------------~-~~~~----~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~- 209 (463)
..|+.. +|... + ..++ -.|+ +.+++.+.+ ++.+|++...++..|...
T Consensus 125 ~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~aavi~Epv~~~gG~~~~ 197 (395)
T PRK03715 125 YEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDI-ASVEKLITD------KTVAVMLEPVQGEGGVIPA 197 (395)
T ss_pred cEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchH-HHHHHHcCC------CceEEEEeCCcCCCCCccC
Confidence 345443 23221 0 0011 1366 888888765 678877775566666654
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+.+.+++|.++|++||+++|+||++..+.- . ...... ..+++ .. -+.++||.+ | .|+.+|.++
T Consensus 198 ~~~~l~~l~~l~~~~~~llI~DEv~tG~GR---t--G~~~a~-~~~gv--~P-----Di~t~gK~l-g-~G~p~~av~-- 260 (395)
T PRK03715 198 TREFMQQLRALTKQHGLLLIVDEVQTGCGR---T--GTLFAY-ELSGI--EP-----DIMTLGKGI-G-GGVPLAALL-- 260 (395)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCC---C--cchhhH-hhcCC--CC-----ceeeehhhh-h-CCcceEEEE--
Confidence 688899999999999999999999986421 1 111111 11211 11 136889999 5 578899998
Q ss_pred CCChhHHHHHHh-hhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccc
Q 041151 290 NIPPKTVDEIYK-IASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---RNVVCN 365 (463)
Q Consensus 290 ~~~~~~~~~l~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~ 365 (463)
+++++.. +.. ....+++.+++...++.+.|+ .++ .++++++.+++-+++.+.|+++ .++...
T Consensus 261 -~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~-----------~l~-~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~v 326 (395)
T PRK03715 261 -AKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVIS-----------QLL-APGFLEGVRARGEYLKEKLLELSEERGLEGE 326 (395)
T ss_pred -Ecccccc-ccCCCcCCCCCCCHHHHHHHHHHHH-----------HHH-hccHHHHHHHHHHHHHHHHHHHhhcCCcCeE
Confidence 4666642 221 122355667777776766653 222 2346677777777787777653 134333
Q ss_pred cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhc---CeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHH
Q 041151 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEAT---GISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIM 440 (463)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~ 440 (463)
...| .++- +++... ....+...+.+. ||.+.+.. ...+|++.. .+++|+++++
T Consensus 327 rG~G-lm~~--i~l~~~------------~~~~~~~~~~~~~~~Gi~~~~~~-------~~~lR~~p~l~~t~~ei~~~~ 384 (395)
T PRK03715 327 RGEG-LLRA--LLLGKD------------IGPQIVEKARDMQPDGLLLNAPR-------PNLLRFMPALNVTTEEIDQMI 384 (395)
T ss_pred Ecce-eEEE--EEecCc------------hHHHHHHHHHhccCCCEEEeecC-------CCEEEEeCCcccCHHHHHHHH
Confidence 3333 3333 332211 112233334445 99986521 136999999 8999999999
Q ss_pred HHHHHHHHHH
Q 041151 441 ESFKKFNDEF 450 (463)
Q Consensus 441 ~~l~~~l~~~ 450 (463)
++|+++++++
T Consensus 385 ~~l~~~l~~~ 394 (395)
T PRK03715 385 AMLRSVLDKL 394 (395)
T ss_pred HHHHHHHHhh
Confidence 9999988754
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-15 Score=150.99 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~~~ 170 (463)
...|++.+|++.+ .+..+++++++.|+..++.+++ ++||+|+++ + |+++ ..++
T Consensus 71 ~~~Le~~lA~l~g--------~~~av~~sSG~aAi~~al~all-~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd 141 (436)
T PRK07812 71 QDVVEQRIAALEG--------GVAALLLASGQAAETFAILNLA-GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVED 141 (436)
T ss_pred HHHHHHHHHHHhC--------CCeEEEEccHHHHHHHHHHHHh-CCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECC
Confidence 4577888887764 3446777777889999999998 899999986 2 2333 1111
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
..|+ +.+++++++ ++++|++.+|+||+|.+.+ +++|.++|+++|+++|+|++++.... ..++ .
T Consensus 142 -~~d~-e~l~~ai~~------~tklV~ie~~sNp~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~-----~~pl-~ 204 (436)
T PRK07812 142 -PDDL-DAWRAAVRP------NTKAFFAETISNPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL-----IRPL-E 204 (436)
T ss_pred -CCCH-HHHHHhCCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-----CCch-h
Confidence 2377 999988876 8999999999999999988 67778888899999999999875322 1111 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
. +. .+++.|++|.+ |..|--+|.+++
T Consensus 205 ~--------Ga---Divv~S~tK~l-gg~G~~i~G~vv 230 (436)
T PRK07812 205 H--------GA---DIVVHSATKYL-GGHGTAIAGVIV 230 (436)
T ss_pred c--------CC---CEEEEeccccc-CCCCCeEEEEEE
Confidence 1 12 27789999999 656666777765
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-15 Score=150.63 Aligned_cols=143 Identities=13% Similarity=0.162 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------cCCC------cc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------KRQQ------IG 172 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------~~~~------~~ 172 (463)
...|++.+|++.+ .+..++++++++++..++.+++ +|||+|+++ ++... ...+ ..
T Consensus 65 ~~~le~~lA~l~g--------~~~al~~~SG~~Ai~~al~all-~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 65 NAVLEERVAALEG--------GTAALAVASGHAAQFLVFHTLL-QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred HHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence 4678888888864 3447777888999999999998 899999997 33221 0011 11
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
.|. +.+++++++ ++++|++++|+||||.+++ +++|.++|+++++++|+|++|+.... ..++ .
T Consensus 136 ~d~-~~l~~ai~~------~tklV~vesp~NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~~-----~~pl-~-- 197 (427)
T PRK05994 136 DDP-ASFERAITP------RTKAIFIESIANPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPYL-----IRPI-E-- 197 (427)
T ss_pred CCH-HHHHHhcCc------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCcccccc-----CCcc-c--
Confidence 277 999998876 8999999999999999987 67888889999999999999975322 1111 1
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
+ . -.+++.|++|.+ |.+|-.+|.+++
T Consensus 198 --~----g---aDivv~S~tK~l-gg~~~~~gG~v~ 223 (427)
T PRK05994 198 --H----G---ADIVVHSLTKFL-GGHGNSMGGIIV 223 (427)
T ss_pred --c----C---CcEEEEcCcccc-CCCCCcEEEEEE
Confidence 1 1 238899999998 656655666554
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.7e-16 Score=145.09 Aligned_cols=315 Identities=13% Similarity=0.087 Sum_probs=214.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCcc----CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAY----SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y----~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd 156 (463)
.+.+.+++.+.+..++....+- +.+.-...|.+++|++.+ .+.-++.+++.-|....+..|.+ -||=
T Consensus 187 Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHq--------K~aALlFsSCfVANDstLftLak~lpgc 258 (570)
T KOG1360|consen 187 HPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQ--------KEAALLFSSCFVANDSTLFTLAKKLPGC 258 (570)
T ss_pred ChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhc--------CcceeeeeeeeeccchHHHHHHHHCCCc
Confidence 7899999999999875433332 234445689999999985 34455555566666666666542 3777
Q ss_pred EEEEc--------cCcee---cCCCccc-ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 157 GVVLL--------FHTTW---KRQQIGV-LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 157 ~Vlvp--------~g~~~---~~~~~~~-d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
+|+-+ .|++- +..-|.. |+ ++|++.++..+.. .+|.|-+.+.+..+|.+.+ +++|++++++|
T Consensus 259 ei~SD~gNHASMI~GIrns~v~K~IFrHND~-~hL~~lL~~~~~s--vPKivAFEtVhSM~Gavcp---leelcDvah~y 332 (570)
T KOG1360|consen 259 EIFSDEGNHASMIQGIRNSRVPKHIFRHNDL-DHLEQLLQSSPKS--VPKIVAFETVHSMDGAVCP---LEELCDVAHKY 332 (570)
T ss_pred EEeccccchHHHHHHhhhcCCcceeeccCCH-HHHHHHHHhCCCC--CCceEEEeeeeccCCCcCC---HHHHHHHHHHh
Confidence 77776 33332 3334444 55 9999999876444 6799999999999999999 77788899999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
|.+-++||+|+...|+ .... .+.+. +++ -.. -.|.-+++.|+| |.-| ||+. +...+++.++.+..
T Consensus 333 GAiTFlDEVHAVGlYG-~rGa-Gvger-dGv----m~k-vDiIsGTLgKaf-GcVG---GYIA---at~~LvDmiRSyAa 397 (570)
T KOG1360|consen 333 GAITFLDEVHAVGLYG-PRGA-GVGER-DGV----MHK-VDIISGTLGKAF-GCVG---GYIA---ATRKLVDMIRSYAA 397 (570)
T ss_pred Cceeeeehhhhhcccc-CCCC-Ccccc-CCc----chh-hhhcccchhhhc-cccc---ceeh---hhhhHHHHHHHhcC
Confidence 9999999999998884 2221 11110 000 111 236779999999 6656 9998 79999999999875
Q ss_pred -hcccCC--hHHHHHHHHhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 305 -IALSPN--VPAQIFMGLMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 305 -~~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
..++++ +.....+..+++ +++ +-+.+|+..+++-.++++.|.+. |+.+++...-.. -+.+.-
T Consensus 398 GFIFTTSLPP~vl~GAleaVr-----------~lk~~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi~~pSHIi-Pv~vgd 464 (570)
T KOG1360|consen 398 GFIFTTSLPPMVLAGALEAVR-----------ILKSEEGRVLRRQHQRNVKYVKQLLMEL-GIPVIPNPSHII-PVRVGD 464 (570)
T ss_pred ceEEecCCChHHHHhHHHHHH-----------HHhhhhhHHHHHHHHHHHHHHHHHHHHc-CCcccCCCccee-eeeccC
Confidence 333333 222222222221 222 23557778888899999999998 888876444332 222321
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+. -..+.+..|+.++||+|-.-.....+.|...+||... .+++.++.+++.|.++-.++
T Consensus 465 a~------------l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 465 AA------------LAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred HH------------HHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 11 1456678899999999987665556667778999988 78788888888887776553
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-15 Score=144.46 Aligned_cols=272 Identities=13% Similarity=0.135 Sum_probs=176.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------cC-----C-Ccc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------KR-----Q-QIG 172 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------~~-----~-~~~ 172 (463)
...|.++++.+- ..+..+.+++++.||..++.+++ ++||+|+++ ||... .. . -..
T Consensus 65 ~~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll-~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~ 135 (396)
T COG0626 65 RDALEEALAELE--------GGEDAFAFSSGMAAISTALLALL-KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDP 135 (396)
T ss_pred HHHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhc-CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECC
Confidence 456777777765 36788888989999999999998 899999998 55443 00 0 111
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
.+. +.+++++.+. ++|+|++.+|+|||-.+.+ +.+|+++|+++++++++|+.|+...+. . ++ .
T Consensus 136 ~~~-~~~~~~~~~~-----~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q---~--PL-~-- 198 (396)
T COG0626 136 GDD-EALEAAIKEP-----NTKLVFLETPSNPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQ---R--PL-E-- 198 (396)
T ss_pred CCh-HHHHHHhccc-----CceEEEEeCCCCccccccc---HHHHHHHHHhcCCEEEEECCccccccc---C--hh-h--
Confidence 233 5666666531 7999999999999988866 888888999999999999999876551 1 11 1
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCch
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDIS 330 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~ 330 (463)
+ +. .|+++|.+|.+.|...+=.|.++. .++++.+.+..... .....++.....+..-++
T Consensus 199 --~----Ga---DIVvhSaTKyl~GHsDvl~G~v~~--~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk-------- 259 (396)
T COG0626 199 --L----GA---DIVVHSATKYLGGHSDVLGGVVLT--PNEELYELLFFAQRANTGAVLSPFDAWLLLRGLR-------- 259 (396)
T ss_pred --c----CC---CEEEEeccccccCCcceeeeEEec--ChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccc--------
Confidence 1 22 389999999998888888886663 34556666533333 334444444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccC-----------------CceeEEeeeccCChhhHHHHhhcCC
Q 041151 331 YEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFT-----------------EGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
.+.-+.++..++...+.+.|++.|.++ ++.| -||++.+ ++..
T Consensus 260 ------TL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf---~l~~----------- 319 (396)
T COG0626 260 ------TLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSF---ELKN----------- 319 (396)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEE---EeCC-----------
Confidence 233345567778888999998876654 3333 3455554 3322
Q ss_pred CChHHHHHHHHHhcCeEe---eCCCCCCC------------C--------CCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGIST---VPGSGFGQ------------K--------EGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v---~pg~~f~~------------~--------~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
. +.+.+.++.-.+.. .-|..... + -..+.+|+|++. |+.+.+++-|++++++
T Consensus 320 --~-~~~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl--Ed~eDLi~Dl~~Al~~ 394 (396)
T COG0626 320 --E-EAAKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL--EDVEDLIADLEQALAK 394 (396)
T ss_pred --h-HHHHHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHHh
Confidence 1 22334444433332 23322211 0 014589999996 5778888888888765
Q ss_pred H
Q 041151 450 F 450 (463)
Q Consensus 450 ~ 450 (463)
.
T Consensus 395 ~ 395 (396)
T COG0626 395 A 395 (396)
T ss_pred h
Confidence 3
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=144.69 Aligned_cols=198 Identities=10% Similarity=0.088 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCCc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQI 171 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~~ 171 (463)
..|.+.||+.- ..+..+++++++.|+..++.+++ ++||+|+++ .|+++ ..+
T Consensus 65 ~~le~~la~LE--------g~~~a~~~~SGmaAi~~~~~~ll-~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd-- 133 (395)
T PRK08114 65 FSLQEAMCELE--------GGAGCALYPCGAAAVANAILAFV-EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFD-- 133 (395)
T ss_pred HHHHHHHHHHh--------CCCeEEEEhHHHHHHHHHHHHHc-CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEEC--
Confidence 46777777654 35678888889999999999998 899999997 23333 111
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC--CeEEEecccccccccCCCCCccchH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE--NLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~--~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
..|. +.+++++++ ++|+|++.+|+||||.+.+ +++|+++|+++ ++++++|.+|+.... ....
T Consensus 134 ~~d~-~~l~~~l~~------~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~------~~pl 197 (395)
T PRK08114 134 PLIG-ADIAKLIQP------NTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL------FKAL 197 (395)
T ss_pred CCCH-HHHHHhcCC------CceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc------cCHH
Confidence 2467 889999887 8999999999999999987 77888888897 499999999975322 1121
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
.+ +-.|+++|.+|+++|...+-.|.++ .+++..+.+..... .....++.....+..-|+
T Consensus 198 ~~-----------GaDivv~S~tKyl~Ghsdv~~G~v~---~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~------ 257 (395)
T PRK08114 198 DF-----------GIDISIQAGTKYLVGHSDAMIGTAV---ANARCWEQLRENSYLMGQMVDADTAYMTSRGLR------ 257 (395)
T ss_pred Hc-----------CCcEEEEcCcccccCCCcceeEEEE---cCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCC------
Confidence 11 2248999999999776668889776 57777676665443 333444444443334333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
.+.-+.++..++...+.+.|++.|.+
T Consensus 258 --------TL~lR~~~~~~na~~va~~L~~hp~V 283 (395)
T PRK08114 258 --------TLGVRLRQHEESSLKVAEWLAEHPEV 283 (395)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 22234556778888899999887654
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-15 Score=152.93 Aligned_cols=310 Identities=14% Similarity=0.115 Sum_probs=186.3
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----C-C
Q 041151 82 PADAIARAKHYLSLTSGGLG-AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----G-E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~-~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~-~ 154 (463)
++.+.+++.+++........ .|. .+.+.++|+.+.+... -..+.+++++++++|+..+++.... . +
T Consensus 60 ~p~v~~ai~~q~~~~~~~~~~~~~-----~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~ 132 (423)
T PRK05964 60 HPYIDQAIREQLDRLDHVIFAGFT-----HEPAERLAQRLVALTP--GGLDHVFFSDSGSVAVEVALKMALQYWRNRGEP 132 (423)
T ss_pred CHHHHHHHHHHHhhCCCccccccC-----CHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 67899999888876211111 121 2455566666654321 1236899999999999999986520 1 3
Q ss_pred C-CEEEEc----cCcee-----c-----CC-------C-----cc-cC-----hHHHHHHHHHHHHhcCCceeEEEEEC-
Q 041151 155 G-DGVVLL----FHTTW-----K-----RQ-------Q-----IG-VL-----IINDLQQSVAQARSKGITVRAMVIIN- 200 (463)
Q Consensus 155 g-d~Vlvp----~g~~~-----~-----~~-------~-----~~-~d-----~~~~l~~~l~~~~~~~~~~~~i~l~~- 200 (463)
| .+|+.- +|... . .. + +. -| . +.+++.+.+. +.++.+|++..
T Consensus 133 ~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~l~~~l~~~---~~~iaavi~Ep~ 208 (423)
T PRK05964 133 GRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATL-DALEALLEKH---AGEIAAFIVEPL 208 (423)
T ss_pred CCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHH-HHHHHHHHhC---CCcEEEEEEecc
Confidence 3 355553 22111 0 00 0 00 02 5 7777777642 12567776654
Q ss_pred CCCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC
Q 041151 201 PGNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC 279 (463)
Q Consensus 201 p~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~ 279 (463)
.++..|... +.+.+++|.++|++||+++|+||++..+... +. .+.. ..+++ . .-+.++||++ +.+
T Consensus 209 i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~-G~---~~a~--~~~~v--~-----pDi~~~~K~l-~gG 274 (423)
T PRK05964 209 VQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRT-GT---LFAC--EQAGV--S-----PDIMCLSKGL-TGG 274 (423)
T ss_pred cccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC-cc---hhHH--HhcCC--C-----CCeeeeehhh-hcC
Confidence 466677655 8999999999999999999999999775331 11 1111 11111 1 1235789999 544
Q ss_pred CceeEEEEecCCChhHHHHHHhh-------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 041151 280 GQRGGYFEMTNIPPKTVDEIYKI-------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMM 352 (463)
Q Consensus 280 G~R~G~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (463)
++++|+++ +++++.+.+... ...+++.+++...++.+.++ .++ .+.+.++..++-+.+
T Consensus 275 ~~p~~av~---~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~-----------~l~-~~~~~~~~~~~g~~l 339 (423)
T PRK05964 275 YLPLAATL---CTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLD-----------LFE-DEPVLERVAALSAGL 339 (423)
T ss_pred cccceEEE---EcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHH-----------HHH-hcCHHHHHHHHHHHH
Confidence 48999988 589998888532 12345567788777777653 111 123455566666667
Q ss_pred HHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 353 TDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 353 ~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
.+.|+++ |.+.-....|.+ +.+.+..+.. ......+...|.++||.+.+.. +.+|++.
T Consensus 340 ~~~l~~l~~~~~i~~vrg~Gl~-~~i~l~~~~~----------~~~~~~l~~~l~~~Gv~v~~~~--------~~lR~~p 400 (423)
T PRK05964 340 AEGLEPFRDLPGVADVRVLGAI-GAVELDRPVL----------ERDGPALRAFALERGVLLRPLG--------NTIYLMP 400 (423)
T ss_pred HHHHHhhccCCCeEEeecccEE-EEEEeccCcc----------hhHHHHHHHHHHHCCeEEEecC--------CEEEEeC
Confidence 7766654 333222333433 3322321110 0012334455678899998731 2699998
Q ss_pred c--CCcCcHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
. .+++||++++++|+++++++
T Consensus 401 ~l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 401 PYIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred CcccCHHHHHHHHHHHHHHHhhC
Confidence 8 89999999999999998763
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-14 Score=146.69 Aligned_cols=141 Identities=14% Similarity=0.168 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~~~ 170 (463)
..+|++.+|++.+ .+..++|+++++|+..++.+++ ++||+|+++ + |+++ .-+.
T Consensus 66 ~~~le~~lA~l~g--------~~~av~~sSGt~Al~~al~~ll-~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 66 VAVLEERVAALEG--------GVGAIATASGQAALHLAIATLM-GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred HHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence 5688888888874 2346889999999999999988 899999997 2 3333 1111
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
-|+ +.+++++++ ++|+|++.+|+||+|.+.+ +++|+++|+++++++|+|.+++.... ..++ .
T Consensus 137 --~d~-~~l~~~i~~------~TklV~~e~~~np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~-----~~pl-~ 198 (433)
T PRK08134 137 --GDI-DGWRAAIRP------NTRLLFGETLGNPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL-----LRPF-E 198 (433)
T ss_pred --CCH-HHHHHhcCC------CCeEEEEECCCcccCcccC---HHHHHHHHHHcCCEEEEECCCccccc-----CCch-h
Confidence 177 999999987 8999999999999999988 77788888899999999999875432 1121 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
+ + -.+++.|.+|.+ +.+|-.+|.+++
T Consensus 199 ~--------G---aD~vv~S~tK~l-~g~g~~~gG~v~ 224 (433)
T PRK08134 199 H--------G---ADLVYHSATKFL-GGHGTAIGGVLV 224 (433)
T ss_pred c--------C---CCEEEecccccc-CCCCCceEEEEE
Confidence 1 1 238899999998 767877777765
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-14 Score=136.62 Aligned_cols=300 Identities=14% Similarity=0.158 Sum_probs=190.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
-...++++.+.+.+ .+...++ -..++.+++++|++ ....+.+++++.|+.+++++|.-+|||+|++|
T Consensus 14 ~~~e~~~v~~vl~s---g~i~~G~--~v~~FE~~~ae~~G--------~k~ava~~sgT~AL~laL~al~ig~GDeVI~p 80 (374)
T COG0399 14 GEEELAAVQEVLKS---GWLTGGP--FVRRFEQAFAEYLG--------VKYAVAVSSGTAALHLALLALAIGPGDEVIVP 80 (374)
T ss_pred chHHHHHHHHHHHc---CCeecCh--HHHHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHhcCCCCCCEEEec
Confidence 56777788888877 3333343 34789999999975 56677777779999999996533899999998
Q ss_pred -------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 162 -------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 162 -------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
.|.++ ..+.+.+|. +.+|++|++ ++|+|+..+- -|...+ +++|.++|++
T Consensus 81 s~TfvATan~i~~~Ga~PVFvDid~~T~nid~-~~ie~aIt~------~tKAIipVhl---~G~~~d---m~~i~~la~~ 147 (374)
T COG0399 81 SFTFVATANAVLLVGAKPVFVDIDPDTLNIDP-DLIEAAITP------RTKAIIPVHL---AGQPCD---MDAIMALAKR 147 (374)
T ss_pred CCchHHHHHHHHHcCCeEEEEecCCcccCCCH-HHHHHHccc------CCeEEEEehh---ccCCCC---HHHHHHHHHH
Confidence 77777 456799999 999999998 8999986633 344444 7777778889
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
||++||+|.+++...-..++...++ + .+.+.||. |.+ . +| -.|.+++ .++++.++++.
T Consensus 148 ~~l~vIEDaAqa~Ga~y~gk~vGt~-----------G----d~~~fSF~~~K~i-t-tg-EGGav~t--nd~ela~k~~~ 207 (374)
T COG0399 148 HGLPVIEDAAQAHGATYKGKKVGSF-----------G----DIGAFSFHATKNL-T-TG-EGGAVVT--NDEELAEKARS 207 (374)
T ss_pred cCCeEEEEcchhccCeecCcccccc-----------c----ceEEEEecCCCCc-c-cc-CceEEEe--CCHHHHHHHHH
Confidence 9999999999987643244443333 1 25666664 777 4 44 6888887 67889998887
Q ss_pred hhhhcccC-------------C-hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Q 041151 302 IASIALSP-------------N-VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT 367 (463)
Q Consensus 302 ~~~~~~~~-------------~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~ 367 (463)
++..+... + .+.-..++..+ ..++.++++.++-++..+...+.|++++++.+...
T Consensus 208 lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl-----------~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~ 276 (374)
T COG0399 208 LRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGL-----------AQLERLDEINERRREIAQIYAEALKGLPGITLPPE 276 (374)
T ss_pred HHHhCcCCCccccceeeecccccCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCC
Confidence 65422211 1 11111222221 12344445555555666677777887766554332
Q ss_pred -Cce---eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCe----EeeCCCCC------C-----CCC-----CCc
Q 041151 368 -EGA---MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGI----STVPGSGF------G-----QKE-----GIF 423 (463)
Q Consensus 368 -~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI----~v~pg~~f------~-----~~~-----~~~ 423 (463)
.+. ++++. +.++.. ..+.+.+...|++.|| ...|.... + ..+ ...
T Consensus 277 ~~~~~~~~~~~~-i~~~~~----------~~~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r 345 (374)
T COG0399 277 PDGAVHAWHLYT-ILVDEE----------GISRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSER 345 (374)
T ss_pred CCCceeeeeeeE-EEecCC----------CCCHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhC
Confidence 222 32221 122210 0134456677888854 44452222 0 001 123
Q ss_pred EEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 424 HLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 424 ~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
.+.+-+. .+++++++.++.|++++.+
T Consensus 346 ~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 346 ILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred eEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 4666555 7889999999999988753
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=145.07 Aligned_cols=293 Identities=16% Similarity=0.171 Sum_probs=184.5
Q ss_pred CcHHHHHHHHHHhhhcC-CCCCccCCC-------CCCHHHHHHHHHHHHHhcCCCC-CCCcEEEcCC-cHHHHHHHHHHH
Q 041151 81 FPADAIARAKHYLSLTS-GGLGAYSDS-------RGIPGVRKEVAEFIERRDGYPS-DPELIFLTDG-ASKGVMQTLNCV 150 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~-~~~~~Y~~~-------~g~~~lr~~ia~~~~~~~g~~~-~~~~i~~t~G-~~~al~~~~~~l 150 (463)
.|+.+++++.+.+.++. .....|... +-+.+.|+.++++++ . ++++|++|+| +|++++.++..+
T Consensus 10 ~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~------~~~~~~vvf~~gs~T~a~~~~~~~l 83 (355)
T cd00611 10 LPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLN------IPDNYKVLFLQGGATGQFAAVPLNL 83 (355)
T ss_pred CCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCCchHHHHHHHHhc
Confidence 38999999988775431 122223222 224577888888875 4 4568999988 999999999999
Q ss_pred hcC---CCCEEEEc------------cCcee---c-CCCccc-ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 151 IRG---EGDGVVLL------------FHTTW---K-RQQIGV-LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 151 ~~~---~gd~Vlvp------------~g~~~---~-~~~~~~-d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
+ . +|+.|++- .|.++ . ...... +..+..+..+++ ++++|.+++.+|.||..++
T Consensus 84 ~-~~~~~~~~i~~g~~~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~lV~~~h~~t~tG~~~~ 156 (355)
T cd00611 84 L-GDKGTADYVVTGAWSAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAP------DAAYVHYCSNETIHGVEFD 156 (355)
T ss_pred C-CCCCeEEEEECCHHHHHHHHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCC------CCCEEEEeCCcccccEEcc
Confidence 7 6 56666553 35544 2 222112 320323233333 7999999999999999743
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
++++.+|+++++|.+.+.... +..+..+ + +.+.|..|.+ |++| +|.+++
T Consensus 157 --------~i~~~~g~~~~VDa~qs~g~~-----~idv~~~-----------~--~~~ss~~K~l-GP~G--~g~l~~-- 205 (355)
T cd00611 157 --------EVPDTGGVPLVADMSSNILSR-----PIDVSKF-----------G--VIYAGAQKNL-GPAG--VTVVIV-- 205 (355)
T ss_pred --------eecccCCCeEEEEccccccCC-----CCCHHHh-----------C--EEEeeccccc-CCCc--eEEEEE--
Confidence 244569999999999986432 3344332 1 4567789988 8888 788885
Q ss_pred CChhHHHHHHhh-----------hh--hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIYKI-----------AS--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDG 355 (463)
Q Consensus 291 ~~~~~~~~l~~~-----------~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 355 (463)
++++++++... .. ...+++.....++.++++ ...++ .+.+.++.++..+++++.
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~----------~l~~~gg~e~i~~~~~~l~~~l~~~ 274 (355)
T cd00611 206 -RKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLK----------WLKEQGGVEAMEKRNRQKAQLLYDT 274 (355)
T ss_pred -CHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 77777655421 11 123444445555555553 22232 567888899999999999
Q ss_pred hhcCCCcc-cc-cC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 356 FNSCRNVV-CN-FT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 356 L~~~pg~~-~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
|+++||+. .. .+ ..+..+. +.++... .+.++ ...+.++|+.+.++.. . .+.+|+|+.
T Consensus 275 l~~~~gl~~~~~~~~~rs~~vvs--f~~~~~~----------l~~~~-~~~~~r~G~~~~~~~~--~---~g~vR~S~~~ 336 (355)
T cd00611 275 IDNSNGFYRGPVDKRARSRMNVP--FRLGKEE----------LEKEF-LKEAEAAGMIGLKGHR--S---VGGIRASIYN 336 (355)
T ss_pred HHhCccccccCCCHHHcCceEEE--EEcCChh----------hhHHH-HHHHHHCCCcccCCCc--c---cCeEEEEccC
Confidence 99998862 21 11 2222222 2322100 01222 2356778997555543 1 137999999
Q ss_pred -CCcCcHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKF 446 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~ 446 (463)
++.+|++++++.|+++
T Consensus 337 ~nt~edi~~l~~al~~~ 353 (355)
T cd00611 337 ALSLEGVQALADFMKEF 353 (355)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 7999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-14 Score=139.65 Aligned_cols=297 Identities=15% Similarity=0.147 Sum_probs=191.8
Q ss_pred CcHHHHHHHHHHhhhcCC-CCCccCCCCCCH---HHHHHHHHHHHHhcCCCCCCCcEEEcCC-cHHHHHHHHHHHhcCCC
Q 041151 81 FPADAIARAKHYLSLTSG-GLGAYSDSRGIP---GVRKEVAEFIERRDGYPSDPELIFLTDG-ASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~-~~~~Y~~~~g~~---~lr~~ia~~~~~~~g~~~~~~~i~~t~G-~~~al~~~~~~l~~~~g 155 (463)
.|..+++++.+.+.++.. ....|....-.+ ++-+.+.+.+....+.+ +.++|++++| ++.+++.++..++ .+|
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~-~~~ 80 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLL-AEG 80 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcC-CCC
Confidence 388999999998885431 233333332233 33333333444333421 2346888766 9999999999998 799
Q ss_pred CEEEEc---------------cCcee---c-C----CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 156 DGVVLL---------------FHTTW---K-R----QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 156 d~Vlvp---------------~g~~~---~-~----~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
+++++. +|. + . . .+..+|+ +.++. ++ ++++|.+++..|.||...+
T Consensus 81 ~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~--~~------~~~~v~~th~ETstGv~~~-- 148 (349)
T TIGR01364 81 KVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDP-STWEI--SE------DAAYVHYCANETIHGVEFR-- 148 (349)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCH-HhcCC--CC------CCCEEEEcCCCCcccEecc--
Confidence 988876 555 3 2 1 2234555 54442 22 7899999999999999765
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
++++.+++++++|.+.+.... +..+.. .+ +++.|..|++ |+|| +|.+++ +
T Consensus 149 ------~l~~~~~~l~iVDavss~g~~-----~id~~~-----------~d--~~~~ssqK~l-gP~G--lg~l~~---s 198 (349)
T TIGR01364 149 ------ELPDVKNAPLVADMSSNILSR-----PIDVSK-----------FG--LIYAGAQKNI-GPAG--LTVVIV---R 198 (349)
T ss_pred ------eecccCCCeEEEEccccccCc-----cCCHHH-----------cc--EEEEeccccc-CCCc--eEEEEE---C
Confidence 456678999999999886322 234332 22 7889999998 8998 788885 7
Q ss_pred hhHHHHHHhh----------h--h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Q 041151 293 PKTVDEIYKI----------A--S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 293 ~~~~~~l~~~----------~--~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~ 357 (463)
++.++++... . . ...+++.....++.++|+ ...++ ++.+.++.++..+++++.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~al~----------~l~~~gG~e~i~~r~~~l~~~l~~~l~ 268 (349)
T TIGR01364 199 KDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSGLVFK----------WLKEQGGVKAIEKRNQAKAQLLYDTID 268 (349)
T ss_pred HHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777655221 1 1 123555555566666653 22333 67788899999999999999
Q ss_pred cCCCccccc--C--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C
Q 041151 358 SCRNVVCNF--T--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P 431 (463)
Q Consensus 358 ~~pg~~~~~--~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~ 431 (463)
+++|+.... + ..+..+. +..|... .+.++ ...+.++|+.+.+|... . +.+|+|+. +
T Consensus 269 ~~~gl~~~~~~~~~rs~~v~s--f~~~~~~----------~~~~~-~~~~~~~Gi~~~~~~~~---~--g~vRvS~~~~n 330 (349)
T TIGR01364 269 NSNGFYRNPVDPRNRSRMNVV--FTLGNEE----------LEKRF-LKEAEERGLVSLKGHRS---V--GGMRASIYNAM 330 (349)
T ss_pred hCCCeeccCCCHHHcCCeEEE--EecCChh----------HhHHH-HHHHHHCCCcccCCccc---c--CeeEEECcCCC
Confidence 997764332 1 1222222 2333210 12332 34677899977666541 1 37999999 7
Q ss_pred CcCcHHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~~ 449 (463)
+.+|++.+++.|++++++
T Consensus 331 t~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 331 PLEGVQALVDFMKEFQKK 348 (349)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999987764
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-14 Score=156.33 Aligned_cols=290 Identities=12% Similarity=0.026 Sum_probs=182.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----------------cCcee---c
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTLNCVIRGEGDGVVLL----------------FHTTW---K 167 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----------------~g~~~---~ 167 (463)
+.+.|+.|+++++ .+++ .|++|+|+++++.+++..+..++||+|+++ .|+++ +
T Consensus 80 ~e~aR~~ia~~lg------a~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~ 153 (805)
T PLN02724 80 IESARQQVLEYFN------APPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVD 153 (805)
T ss_pred HHHHHHHHHHHhC------CCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEecc
Confidence 4578888888886 5554 589999999999999998722789999986 35444 1
Q ss_pred CC---------Cccc--ChHHHHHHHHHH----HHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC-----CeE
Q 041151 168 RQ---------QIGV--LIINDLQQSVAQ----ARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE-----NLV 227 (463)
Q Consensus 168 ~~---------~~~~--d~~~~l~~~l~~----~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~-----~~~ 227 (463)
.+ ...+ +. +.|++.++. ....++++++|.+++.+|-||.+++.+.+..+.+.++.+ +++
T Consensus 154 ~~~~~~~~~~~~g~~~~~~-~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~ 232 (805)
T PLN02724 154 IEEAANQPTNSQGSVVVKS-RGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWM 232 (805)
T ss_pred chhccccccccccccccch-hhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceE
Confidence 11 1112 22 335544321 000112578999999999999999977655444433322 368
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC-CCCceeEEEEecCCChhHHHHHHhhhh-h
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG-ECGQRGGYFEMTNIPPKTVDEIYKIAS-I 305 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~G~R~G~~~~~~~~~~~~~~l~~~~~-~ 305 (463)
+++|.+++... .+..+..+ +..+++.|++|++ | +.| +|++++ .+++.+.+..... .
T Consensus 233 v~vDaaQ~~g~-----~piDv~~~-----------~~Dfl~~S~HK~~-GgP~G--~G~L~v---r~~~~~~l~p~~~GG 290 (805)
T PLN02724 233 VLLDAAKGCGT-----SPPDLSRY-----------PADFVVVSFYKIF-GYPTG--LGALLV---RRDAAKLLKKKYFGG 290 (805)
T ss_pred EEeehhhhcCC-----CCCChhhc-----------CCCEEEEecceec-cCCCC--ceEEEE---ehhhhhhhcCCccCC
Confidence 99999987532 23344432 1237889999988 6 667 788885 6666665543211 0
Q ss_pred ------------------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Q 041151 306 ------------------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 306 ------------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
..+++.....++.++++ ++.. ++.+.++..+..+++.+.|.++
T Consensus 291 g~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~-----------~l~~ig~~~I~~~~~~L~~~l~~~L~~l 359 (805)
T PLN02724 291 GTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFK-----------LLNRLTISAIAMHTWALTHYVANSLRNL 359 (805)
T ss_pred CceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHH-----------HHHHhChHHHHHHHHHHHHHHHHHHHhc
Confidence 11233333344444432 2222 4667788888889999999887
Q ss_pred C------CcccccC---------CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----
Q 041151 360 R------NVVCNFT---------EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK----- 419 (463)
Q Consensus 360 p------g~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~----- 419 (463)
+ ++.++.+ .++.+.|.-....... -....+..++.++||.++.|..|...
T Consensus 360 ~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~----------v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~ 429 (805)
T PLN02724 360 KHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSW----------VGHREVEKLASLSGIQLRTGCFCNPGACAKY 429 (805)
T ss_pred cCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCE----------eCHHHHHHHHHhcCcEEeeccccCchHHHHH
Confidence 5 4666643 2344443211111110 02334567778899999999877531
Q ss_pred --------------------------C-CCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 420 --------------------------E-GIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 420 --------------------------~-~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
. ..+.+|+|++ ++.+|++++++.|++...
T Consensus 430 lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~ 487 (805)
T PLN02724 430 LGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV 487 (805)
T ss_pred cCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence 0 1268999999 899999999999988553
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-14 Score=141.63 Aligned_cols=292 Identities=11% Similarity=0.081 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcH-HHHHHHHHHHhc-C-CCCEEEEc-------------cCcee---c---
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGAS-KGVMQTLNCVIR-G-EGDGVVLL-------------FHTTW---K--- 167 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l~~-~-~gd~Vlvp-------------~g~~~---~--- 167 (463)
..+.+.+.+.+.+..|.+ +.+..++++|++ .++.+++.++-. . +|+.|++| .|+++ +
T Consensus 104 ~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~ 182 (444)
T TIGR03531 104 YKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVL 182 (444)
T ss_pred HHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeee
Confidence 455555555555555643 124577777777 577777777620 1 68999998 77766 2
Q ss_pred -CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCcc
Q 041151 168 -RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFV 246 (463)
Q Consensus 168 -~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~ 246 (463)
.+.+.+|+ +.|++++++. +++..++++++|+ |+...+.+++++|+++|++||+++|+|++|+....
T Consensus 183 d~~~~~iD~-e~Le~aIt~~---~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~------- 249 (444)
T TIGR03531 183 DGDELTTDV-EDIERAIEEI---GPDNILCVLSTTS--CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN------- 249 (444)
T ss_pred cCcCCCcCH-HHHHHHHHhc---cCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh-------
Confidence 46789999 9999999862 1134666666776 56556678899999999999999999999985321
Q ss_pred chHHHH-HhcCCCCCCCce-EEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCC
Q 041151 247 SSKKVL-MDMGLPFSKEVQ-LVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPL 324 (463)
Q Consensus 247 ~~~~~~-~~~~~~~~~~~~-~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~ 324 (463)
....+. +.+ . .++ .+++.|++|++ .+||+ .|.+++ .++++++.+.+... ....+.+.|.+...++..+
T Consensus 250 ~~~~~~~~g~----~-~Grad~vv~s~hK~l-~~pg~-Gg~I~~--~d~el~~~i~~~y~-g~~~~s~~~~~~~~ll~~G 319 (444)
T TIGR03531 250 KYMELINKAI----K-VGRVDAVVSSTDKNF-MVPVG-GAIIYS--FDENFIQEISKSYP-GRASASPSLDVLITLLSLG 319 (444)
T ss_pred hhhhhhhccc----c-ccCCCeEEEeCccCC-CCCCC-EEEEEE--CCHHHHHHHHHhcc-CCCCChHHHHHHHHHHHhC
Confidence 111111 111 1 111 46778999999 77776 444434 47888888877644 2334567777777766421
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccC-CceeEEeeeccCChhhHHHHhhcCCCChHHHHH
Q 041151 325 KPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---RNVVCNFT-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400 (463)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (463)
.+..+++.+++.++++++.+.|+++ -|.++... .....+-+.+.... ..+...+-
T Consensus 320 ----------~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-----------~~~~~~~g 378 (444)
T TIGR03531 320 ----------SKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-----------GKDPTMLG 378 (444)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-----------ccCHHHHH
Confidence 2334556777777888888877764 25666543 44444443333111 11233344
Q ss_pred HHHHhcCeE----eeCCC----------CCCCCC---CCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 401 RLLEATGIS----TVPGS----------GFGQKE---GIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 401 ~ll~~~gI~----v~pg~----------~f~~~~---~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
..|...+|. |.||. .|+... ...|+=++.+ .+.+|++.++.+|.++
T Consensus 379 ~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~ 443 (444)
T TIGR03531 379 SMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS 443 (444)
T ss_pred HHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence 556556662 44565 232210 1125555555 7889999999999865
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=136.45 Aligned_cols=307 Identities=17% Similarity=0.145 Sum_probs=201.2
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------cCcee--c
Q 041151 102 AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------FHTTW--K 167 (463)
Q Consensus 102 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------~g~~~--~ 167 (463)
.|.....+.+|.++++++++ .+.++.+++++.|+..++...+ +|||.|..+ .|+.+ .
T Consensus 66 ~yag~~s~~~lE~~va~~~G--------~~~av~v~sGT~Al~ll~~l~l-~pGDeVpsn~~f~Tt~ahIe~~Gav~vDi 136 (450)
T TIGR02618 66 AYAGSRNFYHLERTVRELYG--------FKYVVPTHQGRGAENLLSQIAI-KPGDYVPGNMYFTTTRYHQEKNGATFVDI 136 (450)
T ss_pred hhcCCCcHHHHHHHHHHHHC--------CCeEEEcCCHHHHHHHHHHhCC-CCcCEECCceeHHHHHHHHHhCCeEEEee
Confidence 58877778999999999985 4579999999999998877776 899977333 44433 1
Q ss_pred ------------CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHHhhhCCeEEEecccc
Q 041151 168 ------------RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRFCYQENLVLLGDEVY 234 (463)
Q Consensus 168 ------------~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~a~~~~~~vi~Deay 234 (463)
...+.+|+ +.|++.+++... .++++|.+++++|-. |..+|.++++++.++|++||+.|++|.+.
T Consensus 137 ~~dea~~~~~~~p~~GniD~-~~Le~aI~~~~~--~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR 213 (450)
T TIGR02618 137 IIDEAHDAQLNIPFKGNVDL-KKLQKLIDEVGA--DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATR 213 (450)
T ss_pred ecccccccccCCCCCCCcCH-HHHHHHhccccC--cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccc
Confidence 23577899 999999986211 145678888888855 89999999999999999999999999998
Q ss_pred cccc--c----CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h--
Q 041151 235 QQNI--Y----QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I-- 305 (463)
Q Consensus 235 ~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~-- 305 (463)
.... | ..+....++..+..++ .... ...+.|..|.+ +.+- .|++++ ++++++++++.... .
T Consensus 214 ~~gNA~~I~~re~g~~~~~i~ei~~e~----~~~a-D~~~~S~~Kd~-~~~~--GG~l~~--~d~~l~~k~r~~~~~~eG 283 (450)
T TIGR02618 214 CVENAYFIKEREQGYEDKSIAEILKEM----MSYA-DGCTMSGKKDC-LVNI--GGFLCM--NDDEMFQSAKELVVVFEG 283 (450)
T ss_pred hhhChhhhhcccccccCCCHHHHHHHH----hccC-cEEEEeeccCC-CCCC--ceEEEe--CCHHHHHHHHHHhhhcCC
Confidence 6521 1 0122234565544444 2222 24778999987 4442 577776 68999999887743 1
Q ss_pred --c-ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc--CC
Q 041151 306 --A-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR--LP 380 (463)
Q Consensus 306 --~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~--~~ 380 (463)
+ .+.+.-...+++..|.. ...+ ....+-..+.++|.+.|.+. |+.+..|.|+--++++.. +|
T Consensus 284 ~~tyGgla~r~~~ala~gL~e----------~~~~--~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lp 350 (450)
T TIGR02618 284 MPSYGGLAGRDMEAMAIGIRE----------AVDY--EYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLP 350 (450)
T ss_pred ccccCchhhhhHHHHHHHHHH----------hhhH--HHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCC
Confidence 1 12123333344434321 1111 11111223467899999998 999888888888887763 22
Q ss_pred hhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCC-CCCCC--------CCcEEEEEec---CCcCcHHHHHHHHHHHH
Q 041151 381 PKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSG-FGQKE--------GIFHLRTTIL---PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~-f~~~~--------~~~~lRis~~---~~~e~i~~~~~~l~~~l 447 (463)
.- ...+ -+...++..+..+.||--.- |+. ++..+ .-..+|+++. =+.+.++...++|..+.
T Consensus 351 h~--~~~~----~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~ 424 (450)
T TIGR02618 351 HI--PQDQ----FPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLY 424 (450)
T ss_pred CC--Chhh----ChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHH
Confidence 20 0001 12456677888899987654 322 12211 1247999999 46678888888877665
Q ss_pred HH
Q 041151 448 DE 449 (463)
Q Consensus 448 ~~ 449 (463)
++
T Consensus 425 ~~ 426 (450)
T TIGR02618 425 KH 426 (450)
T ss_pred hh
Confidence 44
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-14 Score=142.56 Aligned_cols=294 Identities=10% Similarity=-0.033 Sum_probs=184.5
Q ss_pred CcHH-HHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCC-CCcEEEcC-CcHHHHHHHHHHHhcCC-
Q 041151 81 FPAD-AIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSD-PELIFLTD-GASKGVMQTLNCVIRGE- 154 (463)
Q Consensus 81 ~p~~-~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~-G~~~al~~~~~~l~~~~- 154 (463)
+++. +++++.+.... .. +.++ ..-+.+.|+.++++++ .+ +++|++++ |++.+++.++..++ ++
T Consensus 23 ~~~~~v~~a~~~~~~~---~~-hr~~~f~~~~~~~r~~l~~l~~------~~~~~~v~~~~gs~T~~~~~~~~~l~-~~~ 91 (378)
T PRK03080 23 KRPGWQLEALADALLG---RS-HRQKPVKALLKRVIEGTRELLS------LPEGYEVGIVPGSDTGAWEMALWSLL-GAR 91 (378)
T ss_pred CChHHHHHHHHhhhcc---cC-cCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEECCchHHHHHHHHHhcC-CCC
Confidence 3666 88888754332 01 1111 2234567777777775 43 34788875 88999999999997 64
Q ss_pred CCEEEEc--------------cCc-ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 155 GDGVVLL--------------FHT-TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 155 gd~Vlvp--------------~g~-~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
++.|++. +|+ ++ ...+..+|+ ++++ .++.|.+++.+|.||...+ ++
T Consensus 92 ~~~vi~~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~-~~i~-----------~~~~V~~~h~~t~tG~~~p---i~ 156 (378)
T PRK03080 92 RVDHLAWESFGSKWATDVVKQLKLEDPRVLEADYGSLPDL-SAVD-----------FDRDVVFTWNGTTTGVRVP---VA 156 (378)
T ss_pred cceEEEeCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCH-hhcC-----------CCCCEEEEecCCccceecc---ch
Confidence 5666664 354 44 223344555 5422 2466888999999999998 55
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 295 (463)
+|++ +++|+++++|.+.+.... +..+.. -.+++.|..|++++++| +|++++ +++.
T Consensus 157 ~I~~--~~~g~~~vVDa~qs~G~~-----pidv~~-------------iD~~~~s~~K~l~~P~G--~g~l~v---~~~~ 211 (378)
T PRK03080 157 RWIG--ADREGLTICDATSAAFAL-----PLDWSK-------------LDVYTFSWQKVLGGEGG--HGMAIL---SPRA 211 (378)
T ss_pred hhcc--ccCCCeEEEecccccccC-----CCCHHH-------------CcEEEEehhhhCCCCCc--eEEEEE---CHHH
Confidence 5555 678999999999886432 233332 13788999999855678 788885 7778
Q ss_pred HHHHHhhhh-----------------------hc-ccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHH
Q 041151 296 VDEIYKIAS-----------------------IA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRA 349 (463)
Q Consensus 296 ~~~l~~~~~-----------------------~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 349 (463)
++++..... .+ .+++.....++.++|+ .+.++ .+.+.++.+++.
T Consensus 212 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~----------~l~~~gG~e~i~~r~~~l~ 281 (378)
T PRK03080 212 VERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLD----------WANSIGGLDALIARTAANA 281 (378)
T ss_pred HHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHHH
Confidence 777653210 00 1122222223233332 22222 456778888888
Q ss_pred HHHHHHhhcCCCcccccC----CceeEEeeeccCCh---hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 041151 350 RMMTDGFNSCRNVVCNFT----EGAMYSFPQIRLPP---KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422 (463)
Q Consensus 350 ~~l~~~L~~~pg~~~~~~----~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 422 (463)
+++++.|++++++.+..+ .++..+. +.+|. .. +.++...++ ++||.+..|... . ..
T Consensus 282 ~~l~~~l~~~~~~~~~~~~~~~~s~~i~~--~~~~~~~~~~-----------~~~~~~~l~-~~~i~v~~g~~~-~--~~ 344 (378)
T PRK03080 282 SVLYDWAEKTPWATPLVADPATRSNTSVT--LDFVDAQAAV-----------DAAAVAKLL-RENGAVDIEPYR-D--AP 344 (378)
T ss_pred HHHHHHHHhCCCcccccCCccccCccEEE--EEcCCchHHH-----------HHHHHHHHH-HcCCeecccccc-C--CC
Confidence 999999998866665432 1222232 23333 11 234444544 558888876432 1 22
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+.+|+|+. ++.+|++.+++.|++++++++.
T Consensus 345 ~~vRis~~~~~t~~di~~l~~al~~~~~~~~~ 376 (378)
T PRK03080 345 NGLRIWCGPTVEPADVEALTPWLDWAFERLKA 376 (378)
T ss_pred CcEEEecCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 47999999 8999999999999998877654
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=140.35 Aligned_cols=318 Identities=12% Similarity=0.092 Sum_probs=192.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---CCCC-E
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---GEGD-G 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~~gd-~ 157 (463)
++.+.+++.+.+.... ....|- ..+.+..+|+.+.+... -..+.+++++++++|+..+++.... +.|. .
T Consensus 100 ~p~v~~Ai~~ql~~l~-~~~~~~----~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ 172 (459)
T PRK11522 100 NPVVVSAVQNQLAKQP-LHSQEL----LDPLRAMLAKTLAALTP--GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFT 172 (459)
T ss_pred CHHHHHHHHHHHhhCc-cccccc----CCHHHHHHHHHHHHhCC--CCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcE
Confidence 7889999998887631 111111 23455566666644311 1235899999999999999986531 1232 4
Q ss_pred EEEc----cCcee------c----CCCc-----------ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC-CH
Q 041151 158 VVLL----FHTTW------K----RQQI-----------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL-SE 211 (463)
Q Consensus 158 Vlvp----~g~~~------~----~~~~-----------~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~-s~ 211 (463)
|+.- +|... . ...+ -.|. +.+++.++.....+.++.+|++..-..-.|.+. +.
T Consensus 173 ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~ 251 (459)
T PRK11522 173 FIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNI-EAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPE 251 (459)
T ss_pred EEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCH-HHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCH
Confidence 4443 33221 0 0000 1166 888888865322223566776664444457654 56
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecC
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTN 290 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~ 290 (463)
+.++++.++|++||+++|.||++..+.- ....... ..+|+ .. .| .+++|.+ | .| +.+|.++.
T Consensus 252 ~yl~~lr~lc~~~g~llI~DEV~tG~GR-----tG~~~a~-e~~gv--~P---Di--vt~gK~l-g-gG~~Pigav~~-- 314 (459)
T PRK11522 252 GYLTAVRKLCDEFGALLILDEVQTGMGR-----TGKMFAC-EHENV--QP---DI--LCLAKAL-G-GGVMPIGATIA-- 314 (459)
T ss_pred HHHHHHHHHHHHcCCEEEeccceecCCc-----cchhhhh-hccCC--CC---CE--EEechhh-h-CCCccceeEEE--
Confidence 6799999999999999999999975421 1111111 12221 12 13 3889999 4 56 58899984
Q ss_pred CChhHHHHHHhh---hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC-c
Q 041151 291 IPPKTVDEIYKI---ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----RN-V 362 (463)
Q Consensus 291 ~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg-~ 362 (463)
.+++.+.+... ...+++.+++...++.+.|+ .+++ +.+.++.+++-++|.+.|+++ |. +
T Consensus 315 -~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~-----------~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~~~~i 381 (459)
T PRK11522 315 -TEEVFSVLFDNPFLHTTTFGGNPLACAAALATIN-----------VLLE-QNLPAQAEQKGDYLLDGFRQLAREYPDLV 381 (459)
T ss_pred -cHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHH-----------HHhc-chHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 77887766421 22456678888888877764 2222 245666777777777777654 21 1
Q ss_pred ccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHH
Q 041151 363 VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIM 440 (463)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~ 440 (463)
.-+...| .++-+.+.-+. ....+...|.++||.+.+.. .+...+|++.+ .+++++++++
T Consensus 382 ~~VrG~G-l~~giel~~~~-------------~~~~i~~~l~~~Gvl~~~~~-----~~~~~lr~~Ppl~~t~~~id~~l 442 (459)
T PRK11522 382 QEARGKG-MLMAIEFVDNE-------------IGYNFASEMFRQRVLVAGTL-----NNAKTIRIEPPLTLTIEQCEQVL 442 (459)
T ss_pred eeEEece-eEEEEEecCch-------------HHHHHHHHHHHCCeEEEecC-----CCCCEEEEECCccCCHHHHHHHH
Confidence 1122233 33333232111 12234455667899997632 12347999988 8999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 041151 441 ESFKKFNDEFMEQYED 456 (463)
Q Consensus 441 ~~l~~~l~~~~~~~~~ 456 (463)
++|.++++++.+..+|
T Consensus 443 ~~l~~~l~~~~~~~~~ 458 (459)
T PRK11522 443 KAARKALAAMRVSVEE 458 (459)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999998877654
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-13 Score=136.35 Aligned_cols=312 Identities=12% Similarity=0.030 Sum_probs=182.9
Q ss_pred cHHHHHHHHHHh-hhcCC---CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE---cCCcHHHHHHHHHHHhcCC
Q 041151 82 PADAIARAKHYL-SLTSG---GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL---TDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 82 p~~~~~a~~~~~-~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~ 154 (463)
++.+++++...+ ..+.. ....|+...-+.++.+...+...+.++ ...+.+++ .++++.|+..++.+|+ +|
T Consensus 47 s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~--~~~~~~~~nv~~~SG~~AN~av~~aL~-~p 123 (475)
T PLN03226 47 SRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFR--LDPEKWGVNVQPLSGSPANFAVYTALL-QP 123 (475)
T ss_pred CHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhC--CCcceeEEecCcCchHHHHHHHHHHhC-CC
Confidence 788899888887 33321 112233222223333311112222222 23334433 2566889999999998 99
Q ss_pred CCEEEEc---cCc-----------ee--------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 155 GDGVVLL---FHT-----------TW--------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 155 gd~Vlvp---~g~-----------~~--------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
||+|+.. .|+ ++ ....+.+|+ ++|++.+... ++++|++. .++ +|
T Consensus 124 gD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~-d~Le~~l~~~-----~pklIv~~-~S~-~s 195 (475)
T PLN03226 124 HDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDY-DKLEKKAMLF-----RPKLIIAG-ASA-YP 195 (475)
T ss_pred CCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCH-HHHHHHHhhc-----CCeEEEEe-cCc-CC
Confidence 9999982 111 11 123466799 9999998754 67876553 333 56
Q ss_pred cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 207 ~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
...+ +++|.++|+++|+++++|++|.......+....++ +. -.++++|++|++. |-+.|++
T Consensus 196 ~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~-----------~~--~Div~~t~hK~L~---GP~Gg~I 256 (475)
T PLN03226 196 RDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASPF-----------EY--CDVVTTTTHKSLR---GPRGGMI 256 (475)
T ss_pred CccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCC-----------CC--CeEEEecCccccc---CCCceEE
Confidence 6666 66777889999999999999987655222111111 11 2378999999984 5555888
Q ss_pred EecCCChhHH-----------H---HHHhhh-hhcccCChHHHHHH-HHhcCCCCCCCchHHHHHH-HHHHHHHHHHHHH
Q 041151 287 EMTNIPPKTV-----------D---EIYKIA-SIALSPNVPAQIFM-GLMVNPLKPGDISYEQFVR-ESKGILESLRRRA 349 (463)
Q Consensus 287 ~~~~~~~~~~-----------~---~l~~~~-~~~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 349 (463)
++ +++.+ + .+.... ....+.+.+.+.++ ..+++ .... ..+..+++..++.
T Consensus 257 ~~---~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~----------~i~~~~~~~~~~~~~~na 323 (475)
T PLN03226 257 FF---RKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALK----------QAMTPEFKAYQKQVKANA 323 (475)
T ss_pred EE---chhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHH----------HHhCcCHHHHHHHHHHHH
Confidence 85 55433 2 122111 11122233334333 33332 1111 1345678889999
Q ss_pred HHHHHHhhcCCCcccccCC-ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC--CCCcEEE
Q 041151 350 RMMTDGFNSCRNVVCNFTE-GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK--EGIFHLR 426 (463)
Q Consensus 350 ~~l~~~L~~~pg~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~--~~~~~lR 426 (463)
++|.+.|.+. |+.+..+. .+..+++++. +.++ +...+...|++.||.+..+..++.. -....+|
T Consensus 324 ~~L~~~L~~~-G~~l~~~~t~~hi~lv~~~-~~gi-----------~~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giR 390 (475)
T PLN03226 324 AALANRLMSK-GYKLVTGGTDNHLVLWDLR-PLGL-----------TGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVR 390 (475)
T ss_pred HHHHHHHHhC-CCEEEcCCCCCCEEEEEcc-CCCC-----------CHHHHHHHHHHCCCEECCCCCCCCcccCCCCCcc
Confidence 9999999886 98887532 2445555543 2111 2334567789999999865422210 0122488
Q ss_pred EEec------CCcCcHHHHHHHHHHHHHH
Q 041151 427 TTIL------PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 427 is~~------~~~e~i~~~~~~l~~~l~~ 449 (463)
++.. .+++|++++.+.|.++++.
T Consensus 391 iGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 391 IGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred cCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 8433 6778899999999888874
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-13 Score=140.23 Aligned_cols=330 Identities=13% Similarity=0.042 Sum_probs=186.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCc-EEEcCCcHHHHHHHHHHHhcCCC-CEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEG-DGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~~g-d~Vl 159 (463)
++.+.+++.+++... .+.++. .-..+.+.++|+.+.+.......... +++++++++|+..+++....-.| .+|+
T Consensus 57 ~p~i~~ai~~q~~~~---~~~~~~-~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii 132 (442)
T TIGR00709 57 HPNMKQKILDYLQSG---LPLHTL-DLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVI 132 (442)
T ss_pred CHHHHHHHHHHHHhc---cCcccc-ccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEE
Confidence 678999998887752 111111 01135666677776554221101124 45568999999999986531123 4455
Q ss_pred Ec----cCcee-------------------------c-CCCccc--------ChHHH----HHHHHHHHHhcCCceeEEE
Q 041151 160 LL----FHTTW-------------------------K-RQQIGV--------LIIND----LQQSVAQARSKGITVRAMV 197 (463)
Q Consensus 160 vp----~g~~~-------------------------~-~~~~~~--------d~~~~----l~~~l~~~~~~~~~~~~i~ 197 (463)
.- +|... + .+.... +. +. +++.+........++.+|+
T Consensus 133 ~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iaavi 211 (442)
T TIGR00709 133 SFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGS-NASIEYFENFIEDVESGVDKPAAVI 211 (442)
T ss_pred EEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHH-HHHHHHHHHHHHhhccCCCceEEEE
Confidence 43 22211 0 000000 11 22 2333321111112577777
Q ss_pred EE-CCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccC
Q 041151 198 II-NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYW 276 (463)
Q Consensus 198 l~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 276 (463)
+. .++|+....++.+.+++|.++|++||+++|.||++..+... +. .... ..+++ .. .|++ +||.+
T Consensus 212 ~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRt-G~-~~a~----~~~gv--~P---Div~--~gK~l- 277 (442)
T TIGR00709 212 LEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRS-GT-MFAF----EHAGI--EP---DFVV--MSKAV- 277 (442)
T ss_pred EccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCC-Cc-hhHH----HHcCC--CC---cEEE--Ecccc-
Confidence 77 55666555689999999999999999999999999986442 21 1111 12211 22 2333 89999
Q ss_pred CCCCceeEEEEecCCChhHHHHHHhh-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 277 GECGQRGGYFEMTNIPPKTVDEIYKI-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 277 g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
+. |+++|+++. +++ ++.+... ...+++.+++++.++.+.|+ .++ .+.+.++.+++.++|.+.
T Consensus 278 ~~-G~Pigav~~---~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~-----------~i~-~~~l~~~~~~~g~~l~~~ 340 (442)
T TIGR00709 278 GG-GLPLAVLLI---APE-FDAWQPAGHTGTFRGNQLAMVTGTEALN-----------YWK-DDNLAQNAQERGERITSF 340 (442)
T ss_pred cC-CcccEEEEE---chH-HhccCCCcCCCCCCcCHHHHHHHHHHHH-----------HHH-hcCHHHHHHHHHHHHHHH
Confidence 64 899999994 666 4544322 22577889999999988874 221 124566677777777777
Q ss_pred hhcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCC-ChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 356 FNSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV-PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 356 L~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
|+++ |.+.-+...|-+ .-+.+.-+....+.......+ .-...+...+.++||.+.+....+ +.+|+..+
T Consensus 341 L~~l~~~~~~v~~vrG~Gl~-~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~-----~~l~~~Pp 414 (442)
T TIGR00709 341 LDDMIKEHPCIGNVRGRGLM-QGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGGREG-----EVFRLLCP 414 (442)
T ss_pred HHHHHHhCCCeeeeeccceE-EEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCC-----CEEEEECC
Confidence 7653 222223334433 332232111000000000000 012334455678899997643222 36899888
Q ss_pred --CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
.++++++++++++.+++.++.++
T Consensus 415 l~it~~ei~~~~~~l~~~l~~~~~~ 439 (442)
T TIGR00709 415 ITIDQEECEEGISRFKQAVEEALAE 439 (442)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887554
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-14 Score=143.21 Aligned_cols=320 Identities=14% Similarity=0.126 Sum_probs=188.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----C-C-
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----G-E- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~-~- 154 (463)
++.+.+++.+++.+.. ....+ ....+.+..+|+.+.+... -..+.+++++++++|+..+++.... . +
T Consensus 70 ~p~v~~Av~~q~~~~~-~~~~~---~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~ 143 (460)
T PRK06541 70 RAELAEAAAKQAGTLA-FFPLW---SYAHPPAIELAERLAALAP--GDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPG 143 (460)
T ss_pred CHHHHHHHHHHHhhCc-Ccccc---ccCCHHHHHHHHHHHHhCC--CCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 6889999998887631 11111 1122444556666644311 1236899999999999999886531 1 1
Q ss_pred CCEEEEc----cCcee-------------------------cCCC------cccC--------hHHHHHHHHHHHHhcCC
Q 041151 155 GDGVVLL----FHTTW-------------------------KRQQ------IGVL--------IINDLQQSVAQARSKGI 191 (463)
Q Consensus 155 gd~Vlvp----~g~~~-------------------------~~~~------~~~d--------~~~~l~~~l~~~~~~~~ 191 (463)
..+|+.- +|... +... ++-+ + +.+++.+... ++
T Consensus 144 r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~---~~ 219 (460)
T PRK06541 144 KHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAA-DRIEEAIEFE---GP 219 (460)
T ss_pred ccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHH-HHHHHHHHhc---CC
Confidence 2445553 22211 0000 1111 2 4555555431 11
Q ss_pred ceeEEEEECC-CCCCccCCC-HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 192 TVRAMVIINP-GNPTGQCLS-EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 192 ~~~~i~l~~p-~NPtG~~~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
+..+.++..| .++.|.+.+ .+.+++|.++|++||+++|+||++..+.- ....... ..+++ .. .| .
T Consensus 220 ~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR-----~G~~~a~-~~~gv--~P---Di--v 286 (460)
T PRK06541 220 DTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGR-----LGEMFGC-ERFGY--VP---DI--I 286 (460)
T ss_pred CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc-----Cchhhhh-hhcCC--CC---CE--E
Confidence 3344455656 888898765 78899999999999999999999976411 1111111 12211 12 13 3
Q ss_pred cCCcccCCCCCc-eeEEEEecCCChhHHHHHHhhh-----hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 041151 270 TVSKGYWGECGQ-RGGYFEMTNIPPKTVDEIYKIA-----SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILE 343 (463)
Q Consensus 270 S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (463)
++||.+ + .|+ ++|+++ +++++.+.+.... ..+++.+++...++.+.++ .++ .+.+.+
T Consensus 287 t~gK~l-~-~G~~pigav~---~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~-----------~l~-~~~~~~ 349 (460)
T PRK06541 287 TCAKGI-T-SGYSPLGAMI---ASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLD-----------IFE-REGLLD 349 (460)
T ss_pred Eecccc-c-CCccceeEEE---EcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHH-----------HHH-hccHHH
Confidence 599999 5 787 999999 4888888775321 1355667777767666653 222 224567
Q ss_pred HHHHHHHHHHHHhhcCCCc---ccccCCceeEEeeeccCChhhHHHHhhcCCCC------hHHHHHHHHHhcCeEeeCCC
Q 041151 344 SLRRRARMMTDGFNSCRNV---VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP------DVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 344 ~~~~~~~~l~~~L~~~pg~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gI~v~pg~ 414 (463)
+++++.++|.+.|+++... ..+...|.++.+ .+.-+.. +.....+ ....+...+.++||++.+..
T Consensus 350 ~~~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~i-e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~ 423 (460)
T PRK06541 350 HVRDNEPAFRATLEKLLDLPIVGDVRGDGYFYGI-ELVKDKA-----TKETFTDDESERLLRGFLSPALFEAGLYCRADD 423 (460)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEecceEEEE-EEecCcc-----cccCCcchhhhhhHHHHHHHHHHhCCeEEEecC
Confidence 7888888888888775222 223445555443 2211100 0000000 01123455667899998721
Q ss_pred CCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+...+||+.. .+++++++++++|.+++.+.+.
T Consensus 424 -----~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06541 424 -----RGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAWA 458 (460)
T ss_pred -----CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 13347999999 8999999999999999987654
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-13 Score=132.85 Aligned_cols=174 Identities=11% Similarity=0.156 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------c------CCCccc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------K------RQQIGV 173 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------~------~~~~~~ 173 (463)
..|.+.+++.. .....+++++++.|+..++..|+ ++|+.|+.. ||+.. + ..-..-
T Consensus 80 ~~le~~iaal~--------ga~~~l~fsSGmaA~~~al~~L~-~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 80 DVLESGIAALE--------GAAHALLFSSGMAAITVALLHLL-PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred HHHHHHHHHHh--------CCceEEEecccHHHHHHHHHHhc-CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh
Confidence 45555555554 34568888888999999999998 899999886 66544 1 111112
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 253 (463)
|+ +.+++++++ ++++|++.+|.||+..+.+ +++|+++|+++|++|++|+.++...+- ....+
T Consensus 151 ~~-~~~~~~i~~------~t~~V~~ESPsNPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~------~pL~l-- 212 (409)
T KOG0053|consen 151 DL-KKILKAIKE------NTKAVFLESPSNPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQ------DPLPL-- 212 (409)
T ss_pred hH-HHHHHhhcc------CceEEEEECCCCCcccccc---HHHHHHHHhhCCCEEEEeCCcCccccc------Chhhc--
Confidence 33 567777776 7999999999999999866 777788888999999999999875331 11111
Q ss_pred hcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhc
Q 041151 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMV 321 (463)
Q Consensus 254 ~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l 321 (463)
+. .|+++|.+|.++|...+=.|.++. ..+++.++++..+. ..++.+++......+-+
T Consensus 213 ------GA---DIV~hSaTKyi~Ghsdvi~G~iv~--n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rgl 270 (409)
T KOG0053|consen 213 ------GA---DIVVHSATKYIGGHSDVIGGSVVL--NSEELASRLKFLQEDLGWCEDPFDLFLLSRGL 270 (409)
T ss_pred ------CC---CEEEEeeeeeecCCcceeeeEEec--CcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCc
Confidence 22 389999999998888888888884 34889999988876 56666666555554444
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=137.41 Aligned_cols=296 Identities=15% Similarity=0.171 Sum_probs=186.3
Q ss_pred CcHHHHHHHHHHhhhcC-CCCCccCCCCC-------CHHHHHHHHHHHHHhcCCCCCCCcEEEc-CCcHHHHHHHHHHHh
Q 041151 81 FPADAIARAKHYLSLTS-GGLGAYSDSRG-------IPGVRKEVAEFIERRDGYPSDPELIFLT-DGASKGVMQTLNCVI 151 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~-~~~~~Y~~~~g-------~~~lr~~ia~~~~~~~g~~~~~~~i~~t-~G~~~al~~~~~~l~ 151 (463)
.|+.+++++.+.+.++. .....+....- +.+.++.++++++ .+ +..+|+++ ++++.+++.++..++
T Consensus 14 ~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~----~~-~~~~v~~~~gsgt~~~Ea~~~nl~ 88 (360)
T PRK05355 14 LPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLN----IP-DNYKVLFLQGGASLQFAMVPMNLL 88 (360)
T ss_pred CCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhC----CC-CCcEEEEEcCCchHHHHHHHHhcC
Confidence 49999999988764321 11222222111 2345555555553 21 22356555 667889999999998
Q ss_pred cCCCCEEEEc---------------cCcee---cCC-CcccChHHHHHH-HHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 152 RGEGDGVVLL---------------FHTTW---KRQ-QIGVLIINDLQQ-SVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 152 ~~~gd~Vlvp---------------~g~~~---~~~-~~~~d~~~~l~~-~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
.+|+++++. +|... ... ....+. .++++ .+++ ++++|.+++-.+.||...+
T Consensus 89 -~~g~~~l~i~~G~fg~r~~~~a~~~g~~~~~~~~~~~g~~~~-~~~~~~~l~~------~~~~V~~th~eTstGv~~~- 159 (360)
T PRK05355 89 -GGGKKADYVDTGSWSKKAIKEAKKYGEVNVAASSEDDGFTYI-PPLDEWQLSD------DAAYVHYTSNETIDGTEFH- 159 (360)
T ss_pred -CCCCeEEEEECCHHHHHHHHHHHHhCCceEEecccccCCCCC-CChhhccCCC------CCCEEEEccCCCcceEecC-
Confidence 899888876 34322 121 222333 34444 5554 7899999999999999984
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 291 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 291 (463)
++.+| +++++++|.+.+.... +..+. +.+ +++.|..|++ |++| +|.+++
T Consensus 160 -~i~~i------~g~l~vVDavss~g~~-----~idv~-----------~~d--~~~~ssqK~l-gP~G--lg~l~~--- 208 (360)
T PRK05355 160 -ELPDT------GDVPLVADMSSDILSR-----PIDVS-----------KFG--LIYAGAQKNI-GPAG--LTIVIV--- 208 (360)
T ss_pred -ccccc------CCCcEEEEcCccccCc-----cCCHH-----------Hcc--EEEEeccccc-cCCc--eEEEEE---
Confidence 24444 7999999999886322 23332 222 7889999998 8888 788885
Q ss_pred ChhHHHHHHhh-----------hh--hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 041151 292 PPKTVDEIYKI-----------AS--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGF 356 (463)
Q Consensus 292 ~~~~~~~l~~~-----------~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L 356 (463)
+++.++++... .. ...+++...-.++.++|+ ...++ ++.+.++.++..+++++.|
T Consensus 209 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~----------~i~~~gG~e~i~~r~~~l~~~l~~~l 278 (360)
T PRK05355 209 REDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFK----------WLKEQGGVAAMEKRNQEKAALLYDAI 278 (360)
T ss_pred CHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 77777665441 11 234555666666666653 22232 5678888999999999999
Q ss_pred hcCCCcccccC---CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C
Q 041151 357 NSCRNVVCNFT---EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P 431 (463)
Q Consensus 357 ~~~pg~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~ 431 (463)
++++.+....+ ..+..+. +..|... ++.+ ....+.++|+.+.+|.. . .+.+|+|+. +
T Consensus 279 ~~~~~~~~~~~~~~rs~~v~s--f~~~~~~----------~~~~-~~~~~~~~Gi~~~~~~~--~---~g~vRiS~~~~n 340 (360)
T PRK05355 279 DSSDFYRNPVAPEDRSRMNVP--FTLADEE----------LDKK-FLAEAKAAGLVGLKGHR--S---VGGMRASIYNAM 340 (360)
T ss_pred HhCCCcccCCChhhcCCcEEE--EEcCChH----------HHHH-HHHHHHHCCCcccCCCC--c---cCcEEEECCCCC
Confidence 99853222221 1222222 3444321 1223 33456678999866653 1 136999999 7
Q ss_pred CcCcHHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~~ 449 (463)
+.+|++.+++.|++++++
T Consensus 341 t~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 341 PLEGVQALVDFMKEFERR 358 (360)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999997764
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=140.10 Aligned_cols=323 Identities=9% Similarity=0.034 Sum_probs=184.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+++.+.. .+.......+...++++.+.+..... ..+.|++++++++|+..+++....-.| ..|+.
T Consensus 60 ~p~v~~Ai~~ql~~~~----~~~~~~~~~~~~~~lae~L~~~~p~~-~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~ 134 (445)
T PRK08593 60 PPRVVEAIKAQADKFI----HYTPAYMYHEPLVRLAKKLCELAPGD-FEKRVTFGLSGSDANDGIIKFARAYTGRPYIIS 134 (445)
T ss_pred CHHHHHHHHHHHHhcc----CccccccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHHHHHHHHHHhhCCCeEEE
Confidence 7889999988887621 11111112344455666655432110 115899999999999999986421123 34444
Q ss_pred c----cCcee-----c--C----CCc--------------------c-cCh------HHHHHHHHHHHHhcCCceeEEEE
Q 041151 161 L----FHTTW-----K--R----QQI--------------------G-VLI------INDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 161 p----~g~~~-----~--~----~~~--------------------~-~d~------~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
- +|... . . ..+ . .+. ++.+++.+.... ...++.+|++
T Consensus 135 ~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iAavI~ 213 (445)
T PRK08593 135 FTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYL-PADEVACIVI 213 (445)
T ss_pred ECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhc-CCCceEEEEE
Confidence 3 22211 0 0 000 0 011 022333332210 0126777777
Q ss_pred ECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 199 INPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 199 ~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
....+..|.+ .+.+.+++|.++|++||+++|.||++..+... + ..... ..+++ ..+ +.++||.+ +
T Consensus 214 EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~Grt-G----~~~a~-~~~gv--~pD-----i~t~gK~l-~ 279 (445)
T PRK08593 214 ETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRT-G----KWSSI-SHFNI--TPD-----LMSFGKSL-A 279 (445)
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC-c----hHHHH-HhcCC--CCC-----Eeeecccc-c
Confidence 7666667776 68888999999999999999999999865321 1 11111 12221 121 34799999 5
Q ss_pred CCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041151 278 ECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 278 ~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 356 (463)
.|+++|+++ +++++.+.+..... .+++.+++...++.+.|+ .+++ +++.++.+++-++|.+.|
T Consensus 280 -~G~p~gav~---~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~-----------~l~~-~~l~~~~~~~g~~l~~~L 343 (445)
T PRK08593 280 -GGMPMSAIV---GRKEIMESLEAPAHLFTTGANPVSCAAALATID-----------MIED-ESLLQRSAEKGEYARKRF 343 (445)
T ss_pred -CCcccEEEE---EcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHH
Confidence 689999999 58888888753322 466778888887777763 2221 235555666666666666
Q ss_pred hcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 357 NSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 357 ~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
+++ |-+.-+...|-+ +-+.+..+... ..........+...+.++||++.+.. ...+|++.+
T Consensus 344 ~~l~~~~~~v~~vrG~Gl~-~gi~l~~~~~~-----~~~~~~~~~~~~~~~~~~Gv~~~~~~-------~~~lr~~p~l~ 410 (445)
T PRK08593 344 DQWVSKYNFVGDVRGYGLS-IGIDIVSDKKL-----KTRDNEAALKICNYCFEHGVVIIAVA-------GNVLRFQPPLV 410 (445)
T ss_pred HHHHhcCCcEEEEeccceE-EEEEEecCCCc-----CCCcHHHHHHHHHHHHHCCeEEeccC-------CCEEEEECCCc
Confidence 543 222222333333 22222211000 00000012223455667899986631 136899888
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
.+++|++++++++.++++++.++
T Consensus 411 ~t~~~id~~~~~l~~~l~~~~~~ 433 (445)
T PRK08593 411 ITYEQLDTALNTIEQAFTALEAG 433 (445)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999887654
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-13 Score=131.92 Aligned_cols=335 Identities=16% Similarity=0.178 Sum_probs=211.6
Q ss_pred hcccceeccCCC-CcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHH
Q 041151 36 EGKKIIFTNVGN-PHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRK 114 (463)
Q Consensus 36 ~~~~~i~l~~G~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~ 114 (463)
+|+..||+..|+ |-.+|+. ++.+.+++.+++.+ -..|+.+. ++.-
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~---------------------------~p~V~~Av~~~l~~----G~~fg~Pt---e~Ei 96 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHA---------------------------HPAVVEAVQEQLER----GLSFGAPT---ELEV 96 (432)
T ss_pred CCCEeeehhccCcccccCCC---------------------------CHHHHHHHHHHHHh----cCCCCCCC---HHHH
Confidence 677788888886 6665542 56699999988886 24666543 5666
Q ss_pred HHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHh-cCCCCEEEEc---cCcee----------------------c
Q 041151 115 EVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVI-RGEGDGVVLL---FHTTW----------------------K 167 (463)
Q Consensus 115 ~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~-~~~gd~Vlvp---~g~~~----------------------~ 167 (463)
.+|+.+.++ ++. |.|-++|++|+|...+++.-- .-..|+|+.. |++.. +
T Consensus 97 ~~Aell~~~----~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp 172 (432)
T COG0001 97 ELAELLIER----VPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVP 172 (432)
T ss_pred HHHHHHHHh----cCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCC
Confidence 667776655 444 899999999999999888541 0234666664 11111 0
Q ss_pred C----C--Ccc-cChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCH-HHHHHHHHHhhhCCeEEEecccccccc
Q 041151 168 R----Q--QIG-VLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSE-ANLREILRFCYQENLVLLGDEVYQQNI 238 (463)
Q Consensus 168 ~----~--~~~-~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~-~~l~~l~~~a~~~~~~vi~Deay~~~~ 238 (463)
. + ... =|+ +.++++++.. +.+.-+|++. -+.|- |.+.+. +-++.|-++|+++++++|.||+...|.
T Consensus 173 ~~~a~~ti~~~yND~-~al~~~~~~~---g~~IAaVIvEPv~gn~-g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR 247 (432)
T COG0001 173 ADVAKHTLVLPYNDL-EALEEAFEEY---GDDIAAVIVEPVAGNM-GVVPPEPGFLEGLRELTEEHGALLIFDEVITGFR 247 (432)
T ss_pred hhhhccEEEecCCCH-HHHHHHHHHc---CCcEEEEEeccccCCC-CCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcc
Confidence 0 0 001 166 9999998874 2357777776 66774 665554 459999999999999999999998876
Q ss_pred cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh----hhcccCChHHH
Q 041151 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA----SIALSPNVPAQ 314 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~q 314 (463)
.. -........+.|+ +.+++|.+ | .|+.+|.+. +..++.+.+.... ..+++.++++.
T Consensus 248 ~~-~gGaq~~~gi~PD-------------lttlGKiI-G-GGlP~ga~g---Gr~eiM~~~~p~g~vyqaGT~sgnplam 308 (432)
T COG0001 248 VA-LGGAQGYYGVEPD-------------LTTLGKII-G-GGLPIGAFG---GRAEIMEQLAPLGPVYQAGTLSGNPLAM 308 (432)
T ss_pred cC-CcccccccCcCcc-------------hhhhhhhh-c-CCcceeeec---cHHHHHhhhCCCCCccccCCCCCcHHHH
Confidence 52 1111122233232 37899999 5 799999998 7888888775432 25678888888
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCccccc-CCceeEEeeeccC-ChhhHHHHhh
Q 041151 315 IFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---RNVVCNF-TEGAMYSFPQIRL-PPKAIEAAKR 389 (463)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~ 389 (463)
.|..+.|+. +...+...+++.+..+.|.+.|++. -|+.+.. ..|++|-+.=.+. +..+.++..
T Consensus 309 aAG~atl~~-----------l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~gsm~~i~F~~~~~~n~~da~~- 376 (432)
T COG0001 309 AAGLATLEE-----------LMTEEGVYERLDALGERLAEGLRAAAERHGIPLTVNRVGSMFGIFFTEEGVRNYADAKR- 376 (432)
T ss_pred HHHHHHHHH-----------HHhcccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeeecceEEEEecCCCCCCHHHHHh-
Confidence 888887642 1111124555666666666666542 2555432 2344433211121 323222211
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.....-..+.. .+.++||++.|.. |. ..=+|..+++++|++.++++.++++++.+
T Consensus 377 sd~~~~~~~~~-~~l~~GV~l~ps~-~e------a~flS~ahte~di~~~~~a~~~~~~~~~~ 431 (432)
T COG0001 377 SDVERFAKFFH-HLLNRGVYLAPSQ-FE------AGFLSTAHTEEDIDRTLEAADEAFKELAG 431 (432)
T ss_pred hchHHHHHHHH-HHHhCCcccCCcc-cc------ceeeecccCHHHHHHHHHHHHHHHHHhhc
Confidence 11111223333 5667899998843 22 24678889999999999999988887653
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.9e-13 Score=133.70 Aligned_cols=323 Identities=12% Similarity=0.058 Sum_probs=195.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
+|.+++++.+.+.........|... +...++|+.+.+....+ ..+.+++++++++|++++++.--. .....|+.
T Consensus 74 hP~Vv~Av~~q~~~~~h~~~~~~~~----e~~v~~ae~L~~~~p~~-~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~via 148 (447)
T COG0160 74 HPRVVEAVKRQLAKLNHTHTRDLYY----EPYVELAEKLTALAPGS-GLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIA 148 (447)
T ss_pred CHHHHHHHHHHHHHhhcccCCcccc----hhHHHHHHHHHHhCCcc-cCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 8899999998887642222333322 34444455444321110 235799999999999999986521 12344444
Q ss_pred c----cCcee----------------------------c---CCCccc-------ChHHHHHHHHHHHHhcCCceeEEEE
Q 041151 161 L----FHTTW----------------------------K---RQQIGV-------LIINDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 161 p----~g~~~----------------------------~---~~~~~~-------d~~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
. +|... + ...++. +..+.+++.+........++-+|++
T Consensus 149 f~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~ 228 (447)
T COG0160 149 FDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIII 228 (447)
T ss_pred ECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEE
Confidence 3 11110 1 111221 1214455655544333346788877
Q ss_pred ECCCCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 199 INPGNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 199 ~~p~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
..-..-.|.+. |.+-++++.++|++||+++|.||+...+.-++ .+.++ ++.|+ .-=+-++||.+ |
T Consensus 229 EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG-----~~fa~-E~~gv-------~PDivt~aK~i-g 294 (447)
T COG0160 229 EPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG-----KMFAF-EHFGV-------EPDIVTLAKSL-G 294 (447)
T ss_pred ecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc-----cchhh-hhcCC-------CCCEEEecccc-c
Confidence 76676677554 55568999999999999999999999864321 33332 22211 12235799999 5
Q ss_pred CCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 278 ECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 278 ~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
.|+.+|.++ ..+++.+........+++.++++..++.+.|+ .+. .+++.++-.+.-+++.+.|.
T Consensus 295 -~G~Pl~avv---~r~ei~~~~~g~~~~Tf~GNpva~Aaa~AvL~----------vie--~e~L~~~a~~~G~~l~~~L~ 358 (447)
T COG0160 295 -GGLPLSAVV---GRAEIMDWPPGGHGGTFGGNPVACAAALAVLD----------VIE--EENLLERAAELGEYLRDRLE 358 (447)
T ss_pred -CCCceeEEe---ccHHhcccCCcccCCCCCcCHHHHHHHHHHHH----------HHH--HccHHHHHHHHHHHHHHHHH
Confidence 499999999 58877773333334578889999998888874 111 22456666666667777776
Q ss_pred cC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C
Q 041151 358 SC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P 431 (463)
Q Consensus 358 ~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~ 431 (463)
++ |-+.-+... |+++-+.+..+... ........+.+...+.++|+.+..+..++. .+||... .
T Consensus 359 ~l~~~~~~IgdVRG~-Glm~giE~v~d~~t-----~~p~~~~~~~i~~~~~~~Glil~~~G~~~n-----viRi~PPL~i 427 (447)
T COG0160 359 ELQEKHPLIGDVRGL-GLMIGVELVKDRDT-----KEPDAELAAKIVARAFERGLLLLTCGPHGN-----VLRILPPLTI 427 (447)
T ss_pred HHHhhcCceeccccc-ceEEEEEEecCCCC-----CCCCHHHHHHHHHHHHHcCCEEeccCCCCc-----EEEEeCCccc
Confidence 53 322222222 45555444322110 000001233445567788998888665443 7999999 7
Q ss_pred CcCcHHHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~~~ 450 (463)
++++++++++.|.+++++.
T Consensus 428 s~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 428 SDEELDEGLDILEEALKEA 446 (447)
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 8999999999999998764
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-13 Score=132.56 Aligned_cols=307 Identities=16% Similarity=0.124 Sum_probs=200.9
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee-
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW- 166 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~- 166 (463)
..|.....+.+|.++++++++ .+.++.+++++.|+.+++...+ +|||.| .+ .|+..
T Consensus 72 d~Yagd~s~~~LE~~vAe~lG--------~e~aV~v~sGTaAl~ll~~l~v-~pGd~V-p~n~~f~Tt~ahI~~~Ga~fv 141 (460)
T PRK13237 72 EAYAGSRNFYHLEETVQEYYG--------FKHVVPTHQGRGAENLLSRIAI-KPGQYV-PGNMYFTTTRYHQELNGGIFV 141 (460)
T ss_pred hhhcCCCcHHHHHHHHHHHHC--------CCeEEEeCCHHHHHHHHHHhCC-CCcCEE-CCccchHhhHHHHHhCCcEEE
Confidence 468877778999999999985 3568888888989998776666 899965 32 44433
Q ss_pred --c-----------CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 167 --K-----------RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 167 --~-----------~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
. ...+.+|+ +.|++.+++.. .+++++|.+.+++|.. |..+|.+++++|.++|++||+.|++|.
T Consensus 142 Di~~d~a~~~~~~~p~tgnlD~-d~Le~~I~~~~--~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~Da 218 (460)
T PRK13237 142 DIIIDEAHDAQSDHPFKGNVDL-DKLQALIDEVG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDA 218 (460)
T ss_pred eeecccccccccCCCCCCCcCH-HHHHHHhcccc--CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEEC
Confidence 1 34678999 99999998531 1245677778888988 799999999999999999999999999
Q ss_pred ccccccc------CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h
Q 041151 233 VYQQNIY------QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I 305 (463)
Q Consensus 233 ay~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~ 305 (463)
+...... ..+....++.++..++ .... .+++.|++|.+ +.+- .|++++ .++++.++++...- .
T Consensus 219 Ara~gna~fI~~re~~y~~~~i~ei~~e~----~s~a-D~~t~S~~K~~-~~~~--GG~i~t--~D~eL~~~~r~~~~~~ 288 (460)
T PRK13237 219 TRCVENAYFIKEREEGYQDKSIKEIVHEM----FSYA-DGCTMSGKKDC-LVNI--GGFLAM--NDEELFDEAKELVVVY 288 (460)
T ss_pred cchhcChhhhcccccccCCCcHhHHhhhc----cCcC-cEEEEeCCCCC-CCCC--ceEEEE--CCHHHHHHHHHhcccc
Confidence 9874310 0112223444444444 2222 36778899988 4332 588887 68999999987742 1
Q ss_pred -----cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc--
Q 041151 306 -----ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR-- 378 (463)
Q Consensus 306 -----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~-- 378 (463)
+.+.+.-...+++..|.... -..|+. .--++.++|.+.|.+. |+.+..|.||--++++..
T Consensus 289 eG~~tygg~~grd~~alAvgl~E~~-----~~~y~~-------~ri~~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~ 355 (460)
T PRK13237 289 EGMPSYGGMAGRDMEAMAIGIEESV-----QYEYIE-------HRVGQVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRF 355 (460)
T ss_pred CCCcCCCChhhhHHHHHHhHHHhhc-----hHHHHH-------HHHHHHHHHHHHHHHC-CCceecCCCceEEEEEhHHh
Confidence 12222324444444443110 002222 2234567888999887 999999999988876653
Q ss_pred CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCC-CCCCC--------CCcEEEEEec---CCcCcHHHHHHHHHH
Q 041151 379 LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSG-FGQKE--------GIFHLRTTIL---PAEEDMPAIMESFKK 445 (463)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~-f~~~~--------~~~~lRis~~---~~~e~i~~~~~~l~~ 445 (463)
+|.- ...+ -+...++..+..+.||--.- |+. ++..+ .-..+|+++. =+.+.++...++|..
T Consensus 356 lph~--~~~~----~p~~al~~~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~ 429 (460)
T PRK13237 356 LPHL--PQDQ----FPAQALAAELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIK 429 (460)
T ss_pred CCCC--Cccc----ChHHHHHHHHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHH
Confidence 1210 0000 12456677888899987653 221 22211 1247999999 466788888888776
Q ss_pred HHHH
Q 041151 446 FNDE 449 (463)
Q Consensus 446 ~l~~ 449 (463)
+.++
T Consensus 430 ~~~~ 433 (460)
T PRK13237 430 LYKH 433 (460)
T ss_pred HHHh
Confidence 6544
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-13 Score=135.15 Aligned_cols=142 Identities=13% Similarity=0.139 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~ 170 (463)
...+++.++++.+ . .+.|++++| +.++..++.+++ ++||+|+++ .|+++ .-+
T Consensus 71 ~~~le~~la~l~g------~-~~~v~fsSG-~~Ai~~al~~ll-~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 71 VEALENRIASLEG------G-VHAVAFASG-QAAETAAILNLA-GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred HHHHHHHHHHHhC------C-CeEEEeCCH-HHHHHHHHHHhc-CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence 3567777777764 1 245555555 588888888887 899999987 23444 111
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
...|+ +.+++++++ ++++|++.++.||+|.+.+ +++|.++|+++|+++|+|.+++.... ..+. .
T Consensus 141 ~~~d~-e~l~~~l~~------~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~-----~~p~-~ 204 (437)
T PRK05613 141 NPDDP-ESWQAAVQP------NTKAFFGETFANPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL-----VRPL-E 204 (437)
T ss_pred CCCCH-HHHHHhCCc------cCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc-----cChH-H
Confidence 12278 999999987 8999998899999998877 77788888899999999999865321 1111 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
+ . -.+++.|++|.+ +.+|--+|-+++
T Consensus 205 ~--------G---aDivv~S~~K~l-~G~gd~~gG~vv 230 (437)
T PRK05613 205 L--------G---ADVVVASLTKFY-TGNGSGLGGVLI 230 (437)
T ss_pred h--------C---CCEEEeecccee-cCCCcceeEEEE
Confidence 1 2 238899999988 656554455444
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=137.82 Aligned_cols=267 Identities=17% Similarity=0.214 Sum_probs=167.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
..+.++++.+.+.+ +....+++ -..++.+++++|++ .+.++.+++++.||.+++.++--++||+|++|
T Consensus 4 ~~e~~~~v~~~l~s--~~~~~~g~--~~~~fE~~~a~~~g--------~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p 71 (363)
T PF01041_consen 4 TEEEIDAVLEVLRS--GWLSTYGP--YVEEFEKEFAEYFG--------VKYAVAVSSGTSALHLALRALGLGPGDEVIVP 71 (363)
T ss_dssp HHHHHHHHHHHHHH--TCCSSSSH--HHHHHHHHHHHHHT--------SSEEEEESSHHHHHHHHHHHTTGGTTSEEEEE
T ss_pred CHHHHHHHHHHHHh--CCccCCCH--HHHHHHHHHHHHhC--------CCeEEEeCChhHHHHHHHHhcCCCcCceEecC
Confidence 45666777777776 12222222 34788999999984 57888888889999999999843699999998
Q ss_pred -------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 162 -------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 162 -------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
.|.++ ..+.+.+|+ +.+++.+++ ++|+|++++. -|... ++++|.++|++
T Consensus 72 ~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~-~~~~~~i~~------~t~ai~~~h~---~G~~~---d~~~i~~~~~~ 138 (363)
T PF01041_consen 72 AYTFPATASAILWAGAEPVFVDIDPETLNIDP-EALEKAITP------KTKAILVVHL---FGNPA---DMDAIRAIARK 138 (363)
T ss_dssp SSS-THHHHHHHHTT-EEEEE-BETTTSSB-H-HHHHHHHHT------TEEEEEEE-G---GGB------HHHHHHHHHH
T ss_pred CCcchHHHHHHHHhccEEEEEeccCCcCCcCH-HHHHHHhcc------CccEEEEecC---CCCcc---cHHHHHHHHHH
Confidence 77777 457899999 999999998 8999998754 23333 58889999999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+|++||+|.+++......+....++ + .+.+.|| +|.+ +....|++++ .++++.++++.
T Consensus 139 ~~i~lIeD~a~a~g~~~~g~~~G~~-----------g----d~~~fSf~~~K~i---~~geGG~v~~--~~~~~~~~~~~ 198 (363)
T PF01041_consen 139 HGIPLIEDAAQAFGARYKGRPVGSF-----------G----DIAIFSFHPTKII---TTGEGGAVVT--NDPELAERARA 198 (363)
T ss_dssp TT-EEEEE-TTTTT-EETTEETTSS-----------S----SEEEEESSTTSSS----SSS-EEEEE--STHHHHHHHHH
T ss_pred cCCcEEEccccccCceeCCEeccCC-----------C----CceEecCCCCCCC---cCCCCeeEEe--cHHHHHHHhhh
Confidence 9999999999997543222222221 2 2677787 5877 3344788887 67888899887
Q ss_pred hhhhccc--------------C-ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 041151 302 IASIALS--------------P-NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF 366 (463)
Q Consensus 302 ~~~~~~~--------------~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~ 366 (463)
+...+.. . ..+....++..+ ..++.++...+.-+++.+.+.+.|.+++++....
T Consensus 199 ~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl-----------~QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~ 267 (363)
T PF01041_consen 199 LRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGL-----------AQLKRLDEIIARRRENAQRYREALAGIPGIKPPP 267 (363)
T ss_dssp HTBTTEETSECSTTEESSSS--B-B-BHHHHHHHH-----------HHHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEG
T ss_pred hhccCcCccccccccccccCCcccccHHHHHHHHH-----------HHHHHhhhhHHHHHHHHHHHHHHHhcCCCccccc
Confidence 6542211 0 111111121111 1344455566666777888899999988764432
Q ss_pred --CCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 367 --TEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 367 --~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
+.. .++.+ .+.++... . .+.+.+.+.|.+.||...+..
T Consensus 268 ~~~~~~~~~~~~f-~i~~~~~~--------~-~~rd~l~~~L~~~GI~~~~~~ 310 (363)
T PF01041_consen 268 IPDGAERSSYYRF-PIRLPDEA--------L-ADRDELVEALRARGIETRPHY 310 (363)
T ss_dssp CGTTTEEBCESSE-EEEETCCG--------C-STHHHHHHHHHHTTBEEBCST
T ss_pred ccccccccccccc-cccccccc--------c-chHHHHHHHHHHCCCcccccc
Confidence 222 22221 12222110 0 023445667888899998755
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-13 Score=134.22 Aligned_cols=323 Identities=11% Similarity=0.024 Sum_probs=191.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEE--EcCCcHHHHHHHHHHHhc-------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIF--LTDGASKGVMQTLNCVIR------- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~~~~l~~------- 152 (463)
.+.+.+.+...+.....+.... ....++.+.+.+++.+..|.+-+.+++. +|+|+++++..++.+...
T Consensus 54 ~p~~~~~~~~~l~~~~~np~s~---~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~ 130 (431)
T TIGR01788 54 EPEARKLMDETINKNMIDKDEY---PQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRME 130 (431)
T ss_pred CHHHHHHHHHHHhcCCCCcccC---ccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777776422222222 2234777777777777767531113454 489999999988865420
Q ss_pred CCC-----CEEEEc-------------cCcee---cCC--CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 153 GEG-----DGVVLL-------------FHTTW---KRQ--QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 153 ~~g-----d~Vlvp-------------~g~~~---~~~--~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
..| ..|+++ .|.++ +.+ ++.+|+ +.|++++.+ ++.+|+++..||.||.+.
T Consensus 131 ~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~-~~L~~~i~~------~t~lV~~t~g~t~tG~id 203 (431)
T TIGR01788 131 AAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDP-EQVVEAVDE------NTIGVVCILGTTYTGEYE 203 (431)
T ss_pred hcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCH-HHHHHHHhh------CCeEEEEEeCCCCCcccC
Confidence 112 357776 45544 322 357899 999999987 789999999999999998
Q ss_pred CHHHHHHHHHHhhhC------CeEEEeccccccccc--CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCc
Q 041151 210 SEANLREILRFCYQE------NLVLLGDEVYQQNIY--QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQ 281 (463)
Q Consensus 210 s~~~l~~l~~~a~~~------~~~vi~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~ 281 (463)
+ +++|+++|+++ ++++.+|.+|+.+.. ..+.....+. ...-.-+..|.+|+++++.|
T Consensus 204 p---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~-----------~~~~DSis~s~HK~~~~P~g- 268 (431)
T TIGR01788 204 D---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR-----------LPRVKSINVSGHKYGLVYPG- 268 (431)
T ss_pred C---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC-----------CCCceEEEECchhccCCCCC-
Confidence 8 67777788898 999999999995431 0011111111 01112467899997546666
Q ss_pred eeEEEEecCCChh-HHHHHHhh---hh-----hcccCChHHHHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHH
Q 041151 282 RGGYFEMTNIPPK-TVDEIYKI---AS-----IALSPNVPAQIFMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARM 351 (463)
Q Consensus 282 R~G~~~~~~~~~~-~~~~l~~~---~~-----~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 351 (463)
+|++++ .+++ +.+.+... .. .+...++..-.++..++. +..+ ..-.+++.++..++.++
T Consensus 269 -~G~l~~--r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~--------l~~lG~~G~~~i~~~~~~la~~ 337 (431)
T TIGR01788 269 -VGWVIW--RDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYN--------FLRLGREGYRKIMQNSLDVARY 337 (431)
T ss_pred -cEEEEE--eChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHH--------HHHhcHHHHHHHHHHHHHHHHH
Confidence 888887 3433 32333211 00 011222222112222211 0001 11244566777888889
Q ss_pred HHHHhhcCCCcccccC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 352 MTDGFNSCRNVVCNFT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 352 l~~~L~~~pg~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+.+.|++.|++++..+ ..+...| ++...- ....+...+.+.|.++|+.+..-.....-.+...+|+++
T Consensus 338 l~~~L~~~~~~el~~~~~~~~iV~F---r~~~~~-------~~~~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~ 407 (431)
T TIGR01788 338 LAEEIAKLGPFEIISDGSGIPLVAF---KLKDDA-------DPGYTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVV 407 (431)
T ss_pred HHHHHHhCCCEEEeeCCCCceEEEE---EeCCCC-------CCCcCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEe
Confidence 9999999888988754 4444443 322100 000123334566788998754322211113445799999
Q ss_pred c--CCcCcHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
. .+.+.++++++.|++++.++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 408 REGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhh
Confidence 7 67788999999999888654
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-13 Score=138.15 Aligned_cols=318 Identities=12% Similarity=0.039 Sum_probs=179.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC-CCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE-GDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-gd~Vlv 160 (463)
++.+.+++.+.+.+.. + +....-..+...++|+.+.+..... ..+.+++++++++|+..+++....-. ..+|+.
T Consensus 72 ~p~v~~Ai~~ql~~~~---~-~~~~~~~~~~~~~lAe~L~~~~p~~-~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~ 146 (441)
T PRK05769 72 HPKVVKAVKEQAEKFL---H-YSLTDFYYEPAVELAERLVEIAPGG-FEKKVFFTNSGTESNEAAIKIARYHTGRKYIIA 146 (441)
T ss_pred CHHHHHHHHHHHHhcc---C-ccCcccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHHHHHHHHHHHhCCCeEEE
Confidence 6789999988887621 1 1111111345566777765432100 12689999999999999998653112 344555
Q ss_pred c----cCcee--------------------------cC-CC----cc-cCh-------HHHHHHHHHHHHhcCCceeEEE
Q 041151 161 L----FHTTW--------------------------KR-QQ----IG-VLI-------INDLQQSVAQARSKGITVRAMV 197 (463)
Q Consensus 161 p----~g~~~--------------------------~~-~~----~~-~d~-------~~~l~~~l~~~~~~~~~~~~i~ 197 (463)
- +|... +. +. ++ -|. ++.+++.+-+......++.+|+
T Consensus 147 ~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi 226 (441)
T PRK05769 147 FLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAII 226 (441)
T ss_pred ECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 3 22111 00 00 00 011 0234442211000112567766
Q ss_pred EECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccC
Q 041151 198 IINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYW 276 (463)
Q Consensus 198 l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 276 (463)
+.-...-.|.. .+.+.+++|.++|++||+++|+||++..+... +. ..... .+++ ..+ ++ ++||.+
T Consensus 227 ~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~-G~-~~a~~----~~gv--~pD---iv--t~~K~l- 292 (441)
T PRK05769 227 VEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRT-GK-MFAIE----HFGV--EPD---II--TLAKAI- 292 (441)
T ss_pred ECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc-cc-eehhh----ccCC--CCC---EE--EEcccc-
Confidence 65444445664 45778999999999999999999999865331 11 11111 1111 221 22 589999
Q ss_pred CCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041151 277 GECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 277 g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 356 (463)
+ .|+++|+++ +++++.+.+......+++.+++.+.++.+.|+ .+++ ++.++.+++-++|.+.|
T Consensus 293 ~-~G~p~gav~---~~~~i~~~~~~~~~~T~~g~p~~~aaa~a~L~-----------~l~~--~~~~~~~~~g~~l~~~L 355 (441)
T PRK05769 293 A-GGLPLGAVI---GRAELMFLPPGSHANTFGGNPVAAAAALATLE-----------ELEE--GLLENAQKLGEYLRKEL 355 (441)
T ss_pred c-CCcccEEEE---EehhhhhcCCCCCCCCCCcCHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHHHH
Confidence 5 689999998 47777654332233456678888888887763 3333 56667777777777777
Q ss_pred hcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 357 NSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 357 ~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
+++ |-+.-+...| .++-+.+..+... ........+...+.++||++.+. +...+|++..
T Consensus 356 ~~l~~~~~~~~~vrg~G-~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~Gil~~~~-------~~~~lr~~p~l~ 420 (441)
T PRK05769 356 KELKEKYEFIGDVRGLG-LMIGVELVKDRKE-------PDPKLRDKVLYEAFKRGLLLLGA-------GKSAIRIIPPLI 420 (441)
T ss_pred HHHHHhCCCeeeeecce-EEEEEEeccCCcc-------ccHHHHHHHHHHHHhCCcEEecC-------CCCEEEEeCCCC
Confidence 653 2111122223 3333223211000 00001222344566789998762 2236999988
Q ss_pred CCcCcHHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++|+++++++|.+++.++
T Consensus 421 ~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 421 ITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 69999999999999998753
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-13 Score=133.50 Aligned_cols=309 Identities=14% Similarity=0.094 Sum_probs=181.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---CCC-CE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---GEG-DG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~~g-d~ 157 (463)
++.+.+++.+.+.... ....|- ..+.+..+|+.+.+... -.-+.+++++++++|+..+++.... ..| ..
T Consensus 93 hp~v~~Av~~ql~~l~-~~~~~~----~~~~~~~lAe~L~~~~p--~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ 165 (442)
T TIGR03372 93 NPNVIAAVENQLAKQP-LHSQEL----LDPLRALLAKTLAALTP--GKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFT 165 (442)
T ss_pred CHHHHHHHHHHHHhCC-Cccccc----CCHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcE
Confidence 7889999998887631 111121 13455556666654311 1125789999999999999986531 124 45
Q ss_pred EEEc----cCcee------c----CCCc-----------ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC-CH
Q 041151 158 VVLL----FHTTW------K----RQQI-----------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL-SE 211 (463)
Q Consensus 158 Vlvp----~g~~~------~----~~~~-----------~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~-s~ 211 (463)
|+.. +|... . ...+ -.|. +.+++.++.....+.++.+|++..-..--|... +.
T Consensus 166 ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~-~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~ 244 (442)
T TIGR03372 166 FIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDI-EAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPE 244 (442)
T ss_pred EEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCH-HHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCH
Confidence 5554 33221 0 0011 1256 788887764322223567777664444456655 57
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecC
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTN 290 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~ 290 (463)
+-++++.++|++||+++|.||++..+.- . ...... ..+|+ .. .| .+++|.+ | .| +.+|.++
T Consensus 245 ~yl~~l~~lc~~~g~llI~DEV~tG~GR---t--G~~~a~-e~~gv--~P---Di--vt~gK~l-g-~G~~Pigavv--- 306 (442)
T TIGR03372 245 GYLPAVRALCDEFGALLILDEVQTGMGR---T--GKMFAC-EHEGV--QP---DI--LCLAKAL-G-GGVMPIGATI--- 306 (442)
T ss_pred HHHHHHHHHHHHcCCEEEEeecccCCCc---c--ccchhh-hhcCC--CC---Ce--eeehhhh-c-CCcccceEEE---
Confidence 7799999999999999999999976421 1 111111 12221 12 13 3589999 5 57 6899988
Q ss_pred CChhHHHHHHhh---hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----C-Cc
Q 041151 291 IPPKTVDEIYKI---ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----R-NV 362 (463)
Q Consensus 291 ~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----p-g~ 362 (463)
+++++.+.+... ...+++.++++..++.+.|+ .+++ +++.++.+++-+++.+.|+++ | .+
T Consensus 307 ~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~-----------~i~~-~~l~~~~~~~G~~l~~~L~~l~~~~~~~i 374 (442)
T TIGR03372 307 ATEAVFSVLFDNPFLHTTTFGGNPLACAAALATIN-----------ELLE-KNLPAQAAIKGDFLLDGFQQLAAEYPDLI 374 (442)
T ss_pred ecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 478888877422 22466778888888877763 2221 124445555555666666543 3 22
Q ss_pred ccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHH
Q 041151 363 VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIM 440 (463)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~ 440 (463)
.-+...| .++-+.+.-+. ....+...+.++||++.+... +.+.+||+.+ .+++++++++
T Consensus 375 ~~vRG~G-l~~giel~~~~-------------~~~~i~~~l~~~Gvl~~~~~~-----~~~~lr~~Ppl~~t~~~id~~~ 435 (442)
T TIGR03372 375 IEARGKG-LLMAIEFRDNE-------------IGYAFAKELFQQNILVAGTLN-----NAKSIRIEPPLTITIEQCALVI 435 (442)
T ss_pred EEEecce-EEEEEEeCChH-------------HHHHHHHHHHHCCcEEeecCC-----CCCEEEEECCcccCHHHHHHHH
Confidence 2223333 44443332111 122344556678999975321 1237999988 8999999999
Q ss_pred HHHHHHH
Q 041151 441 ESFKKFN 447 (463)
Q Consensus 441 ~~l~~~l 447 (463)
++|.+++
T Consensus 436 ~~l~~~~ 442 (442)
T TIGR03372 436 KAAKDAL 442 (442)
T ss_pred HHHHHhC
Confidence 9998753
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-12 Score=123.81 Aligned_cols=313 Identities=12% Similarity=0.071 Sum_probs=193.1
Q ss_pred cHHHHHHHHHHhhhc-C---CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLT-S---GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~-~---~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+.++.-..+.+. . +.-..|+.-+-...+.+...+...+.+| .+-.+|...+| ++|...++.+|+ +|||+
T Consensus 39 S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFg--a~~anVQPhSG-s~AN~av~~All-~pGDt 114 (413)
T COG0112 39 SPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG--AEYANVQPHSG-SQANQAVYLALL-QPGDT 114 (413)
T ss_pred CHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhC--CCccccCCCCc-hHHHHHHHHHHc-CCCCe
Confidence 778888887776652 1 1122233322223444444455555545 33447777777 568999999998 99999
Q ss_pred EEEc---cCcee--------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 158 VVLL---FHTTW--------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 158 Vlvp---~g~~~--------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
|+-. .|+.+ ..+...+|. |++++...+. +||+|+.-.-..| ..++ .
T Consensus 115 imgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDy-D~~~k~a~e~-----kPK~ii~G~SaY~--r~id---~ 183 (413)
T COG0112 115 IMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDY-DEVEKLAKEV-----KPKLIIAGGSAYS--RPID---F 183 (413)
T ss_pred EecccCCCCCcccCCCCCCccceeEEeEecccccccCccCH-HHHHHHHHHh-----CCCEEEECccccc--cccC---H
Confidence 9885 33222 335688999 9999999987 9999876543333 2334 6
Q ss_pred HHHHHHhhhCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 215 REILRFCYQENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++.++|.+.|.++++|-+|-. ++-+ +. +++... . -.|+.+|.+|+| .|=|.|.+.+ .+.
T Consensus 184 ~~~reIad~VGA~L~~DmAHiaGLVA~-G~-~p~P~~---------~---AdvVTtTTHKTl---rGPrGG~Il~--~~e 244 (413)
T COG0112 184 KRFREIADEVGAYLMVDMAHVAGLIAG-GV-HPNPLP---------H---ADVVTTTTHKTL---RGPRGGIILT--NDE 244 (413)
T ss_pred HHHHHHHHHhCceEEehHHHHHHHHhc-cc-CCCCCC---------c---cceEeCCcccCC---CCCCceEEEe--ccH
Confidence 6777777799999999999954 3332 22 222211 1 137889999998 5888999985 235
Q ss_pred hHHHHHHhh-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-Ccee
Q 041151 294 KTVDEIYKI-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT-EGAM 371 (463)
Q Consensus 294 ~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-~g~~ 371 (463)
++..++.+. .. ....++....+++.++.-.+..+..|. .-.++..+|.+.|.+.|.+. |++++.. .-+-
T Consensus 245 el~kkin~aVFP-g~qggpl~HviAakaVa~~Eal~p~fk-------~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnH 315 (413)
T COG0112 245 ELAKKINSAVFP-GLQGGPLMHVIAAKAVAFKEALEPEFK-------EYAKQVVKNAKALAEALKER-GFKVVSGGTDNH 315 (413)
T ss_pred HHHHHhhhhcCC-ccCCChHHHHHHHHHHHHHHHcChhHH-------HHHHHHHHHHHHHHHHHHHc-CCeEecCCccce
Confidence 788888663 33 222233333333322211000112233 33445788899999999987 9988762 2234
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCCCC--CCCCcEEEEEec------CCcCcHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGFGQ--KEGIFHLRTTIL------PAEEDMPAIMES 442 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~~--~~~~~~lRis~~------~~~e~i~~~~~~ 442 (463)
.+.+|++ +.+. +...+..+|.+.||.+.- +-.|.. +-....+||... -.++|+++..+-
T Consensus 316 l~lVDl~-~~~~-----------~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~ 383 (413)
T COG0112 316 LVLVDLR-SKGL-----------TGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIADL 383 (413)
T ss_pred EEEEEcc-cCCC-----------CHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHHHH
Confidence 5666776 3221 455577889999999863 222221 111235999887 345677777777
Q ss_pred HHHHHHH
Q 041151 443 FKKFNDE 449 (463)
Q Consensus 443 l~~~l~~ 449 (463)
|.+++..
T Consensus 384 I~~vl~~ 390 (413)
T COG0112 384 IADVLDG 390 (413)
T ss_pred HHHHHhc
Confidence 7777664
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=135.62 Aligned_cols=197 Identities=10% Similarity=0.124 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~ 170 (463)
..+|.+.++++.+ .+..+++++++.||..++.+++ ++||+|+++ .|+++ ..+.
T Consensus 66 ~~~lE~~la~leg--------~~~av~~sSG~aAi~~al~all-~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~ 136 (384)
T PRK06434 66 VQAFEEKYAVLEN--------AEHALSFSSGMGAITSAILSLI-KKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDT 136 (384)
T ss_pred HHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECC
Confidence 3567777777753 4567788888899999999998 899999997 23333 0000
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
. +. +.++ ++. .++++|++.+|+|||+.+.+ +++|+++|++++ +++|.++..... .. ++ .
T Consensus 137 ~--~~-~~~~--l~~-----~~tklv~~e~~snpt~~v~D---i~~I~~la~~~~--lvVD~t~~s~~~--~~---pl-~ 195 (384)
T PRK06434 137 D--RL-NSLD--FDP-----SNYDLIYAESITNPTLKVPD---IKNVSSFCHEND--VIVDATFASPYN--QN---PL-D 195 (384)
T ss_pred C--Ch-hhee--ecC-----CCeeEEEEEcCCCCCceeec---HHHHHHHHHHcC--eEEECCCCCccc--CC---ch-h
Confidence 0 11 1121 121 16899999999999998855 888888888998 456999754321 11 11 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
. . -.+++.|.+|.+.|..+.-.|.+++ .++++.++++.... .....+.+.-..+..-|
T Consensus 196 ~--------g---aDivv~S~tK~i~G~~d~~gG~vv~--~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL-------- 254 (384)
T PRK06434 196 L--------G---ADVVIHSATKYISGHSDVVMGVAGT--NNKSIFNNLVERRKTLGSNPDPIQAYLALRGL-------- 254 (384)
T ss_pred c--------C---CCEEEeecccccCCCCCceEEEEec--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCC--------
Confidence 1 1 2388899999994333365787764 46677777765543 23333333222222332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
+.+..+.++..++...+.+.|+++|.+
T Consensus 255 ------~tL~~R~~r~~~~a~~~a~~L~~~p~v 281 (384)
T PRK06434 255 ------KTLGLRMEKHNKNGMELARFLRDSKKI 281 (384)
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 223345556677888888889887765
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.6e-13 Score=143.20 Aligned_cols=302 Identities=10% Similarity=0.061 Sum_probs=188.3
Q ss_pred CCCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcH----HHHHHHHHHHhcCC-CC----EEEEc-----
Q 041151 99 GLGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGAS----KGVMQTLNCVIRGE-GD----GVVLL----- 161 (463)
Q Consensus 99 ~~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~----~al~~~~~~l~~~~-gd----~Vlvp----- 161 (463)
..+.|.| .+|+.++-..+.+++.+..| .+.|.++++++ +++..+++++. ++ || +|++|
T Consensus 553 ~~hp~~p~~~~~g~~~~~~~~r~~la~i~g----~~~v~f~pnaga~ge~a~~~vi~~~~-~~~Gd~~r~~vli~~~aH~ 627 (993)
T PLN02414 553 NIHPFAPVDQAQGYQEMFEDLGDLLCEITG----FDSFSLQPNAGAAGEYAGLMVIRAYH-LSRGDHHRNVCIIPVSAHG 627 (993)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEcCCCcHHHHHHHHHHHHHHH-hccCCCCCCEEEeCCCcCc
Confidence 4566666 44655444444444444433 39999999988 89999999998 55 88 89998
Q ss_pred --------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 --------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 --------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ .+.+..+|+ +.|++.+++. ..++++|++++|||-+|...+ +++|+++|+++|++++
T Consensus 628 sn~a~a~~~G~~vv~v~~d~~G~vDl-e~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~Galv~ 700 (993)
T PLN02414 628 TNPASAAMCGMKIVVVGTDAKGNINI-EELRKAAEAH---KDNLAALMVTYPSTHGVYEEG---IDEICDIIHDNGGQVY 700 (993)
T ss_pred cCHHHHHHCCCEEEEeccCCCCCcCH-HHHHHHHhcc---CCCeEEEEEECCCccccccch---HHHHHHHHHHcCCEEE
Confidence 46665 335678999 9999999841 016899999999999888755 8888889999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC---CceeEEEEecCCChhHHHHHHhh----
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC---GQRGGYFEMTNIPPKTVDEIYKI---- 302 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~---G~R~G~~~~~~~~~~~~~~l~~~---- 302 (463)
+|-++...... ..... +.+-.|+++|.+|+|++.. |-.+|++.+ .+++...+-..
T Consensus 701 vDgAq~~a~~~----l~~p~-----------~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~---~~~L~p~lPg~~v~~ 762 (993)
T PLN02414 701 MDGANMNAQVG----LTSPG-----------FIGADVCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVP 762 (993)
T ss_pred EEecCHHhccC----cCCcc-----------ccCCCEEEecCCccCCcCcccCCCCeeeEEE---chhhcccCCCCcccc
Confidence 99998653221 11111 1123488899999884222 233888885 55544433110
Q ss_pred --------hhhcccC---ChHHHH----HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Q 041151 303 --------ASIALSP---NVPAQI----FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT 367 (463)
Q Consensus 303 --------~~~~~~~---~~~~q~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~ 367 (463)
.....++ +...|. ++..++... -.+-+++..+.-..+.+++.+.|.+..++.+..|
T Consensus 763 ~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~l---------G~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~ 833 (993)
T PLN02414 763 TGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMM---------GSEGLTDASKIAILNANYMAKRLEGHYPVLFRGK 833 (993)
T ss_pred CCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHH---------CHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCC
Confidence 1001111 122222 112221100 0111344566777788899999977445555555
Q ss_pred CceeEE--eeecc-CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHH
Q 041151 368 EGAMYS--FPQIR-LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMES 442 (463)
Q Consensus 368 ~g~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~ 442 (463)
.+.++- .+++. ++.. .+ .+..++..+|+ ++||..-. ..|. ..+++||+.. .+.+||++++++
T Consensus 834 ~~~~~hEfv~~~~~l~~~-------~g-~~~~di~krL~-d~Gihapt-~~~p---v~~~lmiepTE~~skeelDrf~~a 900 (993)
T PLN02414 834 NGTCAHEFIIDLRPFKNT-------AG-IEPEDVAKRLM-DYGFHAPT-MSWP---VPGTLMIEPTESESKAELDRFCDA 900 (993)
T ss_pred CCCeeeeEEEeccccccc-------cC-CCHHHHHHHHH-HcCcEEee-eccc---cCCEEEEEeeeeCCHHHHHHHHHH
Confidence 554221 11222 2210 01 12355555544 89997644 3342 3458999999 889999999999
Q ss_pred HHHHHHHHHH
Q 041151 443 FKKFNDEFME 452 (463)
Q Consensus 443 l~~~l~~~~~ 452 (463)
|+++..+..+
T Consensus 901 l~~i~~e~~~ 910 (993)
T PLN02414 901 LISIREEIAD 910 (993)
T ss_pred HHHHHHHHHH
Confidence 9999888765
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-12 Score=130.91 Aligned_cols=315 Identities=13% Similarity=0.061 Sum_probs=181.5
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCC---CC--CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDS---RG--IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~---~g--~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
+|+.+++++.+.+..+. ...|... .| +..+++.++++++ .+..+++++++.++..++.++ .+|
T Consensus 98 l~~~v~eav~~~~~~~~--~le~~l~~g~~g~r~~~~e~~lA~l~G--------ae~a~vv~sgtaAl~l~l~~l--~~G 165 (464)
T PRK04311 98 LSEAAIEAVTEAARGYS--NLEYDLATGKRGSRDRALAALLCALTG--------AEDALVVNNNAAAVLLALNAL--AAG 165 (464)
T ss_pred CCHHHHHHHHHHHhccc--ccccchhhcccchHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHh--CCC
Confidence 48999999988877631 1122211 12 2577788887764 456777888889999988775 699
Q ss_pred CEEEEc----c--C-------------cee--cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC--ccCCCHH
Q 041151 156 DGVVLL----F--H-------------TTW--KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT--GQCLSEA 212 (463)
Q Consensus 156 d~Vlvp----~--g-------------~~~--~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt--G~~~s~~ 212 (463)
|+|+++ + | +++ .......++ +.+++++++ ++++|++++++||+ |.. ...
T Consensus 166 deVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~-~dle~aI~~------~TklV~~vh~sN~~i~G~~-~~~ 237 (464)
T PRK04311 166 KEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHL-RDYEQAINE------NTALLLKVHTSNYRIEGFT-KEV 237 (464)
T ss_pred CEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCH-HHHHHhcCc------cCeEEEEEcCCCccccccC-CcC
Confidence 999997 1 2 222 111223567 899999987 89999999999984 432 113
Q ss_pred HHHHHHHHhhhCCeEEEecccccccc----cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNI----YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
++++|+++|++||+++|+|.+...+. |+-.. .+.+... -+.+-.++++|.+|++ |.| ..|+++
T Consensus 238 dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~-~p~~~~~--------l~~GaDiv~fSg~K~L-gGp--~~G~i~- 304 (464)
T PRK04311 238 SLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPD-EPTVQEL--------LAAGVDLVTFSGDKLL-GGP--QAGIIV- 304 (464)
T ss_pred CHHHHHHHHHHcCCeEEEECCCcccccchhccCCC-CCchhhH--------HhcCCcEEEecCcccc-cCC--ceEEEE-
Confidence 48889999999999999999654321 10001 1122221 1112348999999998 434 489988
Q ss_pred cCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCC--Cc-
Q 041151 289 TNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE--QFVRESKGILESLRRRARMMTDGFNSCR--NV- 362 (463)
Q Consensus 289 ~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~p--g~- 362 (463)
+++++++++++..- ....+......++.+.|..-...+..+. ..++-+....++..++.+.+.+.|+..+ ++
T Consensus 305 --g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~ 382 (464)
T PRK04311 305 --GKKELIARLKKHPLKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFA 382 (464)
T ss_pred --EcHHHHHHHhhchhHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCee
Confidence 58889888764321 2233333333333333310000000000 0111122233566677888888887753 32
Q ss_pred -ccccC----Cce-e-----E-EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 363 -VCNFT----EGA-M-----Y-SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 363 -~~~~~----~g~-~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
.+.+. .|| + . .-+.++.. + -+...+...|++....|..- . .+..+.+.+.
T Consensus 383 ~~~~~~~~~~gggs~p~~~~~~~~v~~~~~-~-----------~~~~~l~~~lr~~~~~i~~r----~--~~~~~~ld~r 444 (464)
T PRK04311 383 VEVVPSFSQVGGGSLPVDRLPSAAVTLTPK-D-----------RSLEALAARLRLLPPPVIGR----I--EDGRLLLDLR 444 (464)
T ss_pred EEEEEccCccCCCCCcCCCCCeEEEEEeCC-C-----------CCHHHHHHHHhcCCCCEEEE----E--ECCEEEEEeC
Confidence 33321 111 1 1 11112211 1 13344556677644333221 1 2336888888
Q ss_pred -CCcCcHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~ 448 (463)
..++|++.++++|++++.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~ 463 (464)
T PRK04311 445 TLEEEDEERLAAALLEALN 463 (464)
T ss_pred cCCHHHHHHHHHHHHHHhh
Confidence 788999999999988753
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-12 Score=135.53 Aligned_cols=324 Identities=12% Similarity=0.048 Sum_probs=187.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+++.... ...+...+..+....+++.+.+... +...+.+++++++++|+..+++.... .++
T Consensus 107 hp~v~~Av~~ql~~~~---~~~~~~~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~SGsEA~e~AlKlAr~~~~~~g~~~ 182 (504)
T PLN02760 107 EPRLVAAATEQLNKLP---FYHSFWNRTTKPSLDLAKELLEMFT-ARKMGKVFFTNSGSEANDTQVKLVWYYNNALGRPN 182 (504)
T ss_pred CHHHHHHHHHHHhhcc---ceecccccCcHHHHHHHHHHHhhcC-CCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 7889999998887631 1111111234555666666543311 11224789999999999999997620 133
Q ss_pred -CEEEEc----cCcee--------c--CCCcc-----------------------------cChHHHHHHHHHHHHhcCC
Q 041151 156 -DGVVLL----FHTTW--------K--RQQIG-----------------------------VLIINDLQQSVAQARSKGI 191 (463)
Q Consensus 156 -d~Vlvp----~g~~~--------~--~~~~~-----------------------------~d~~~~l~~~l~~~~~~~~ 191 (463)
..|+.- +|... + ...++ ... +.|++.+.... ..
T Consensus 183 r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~le~~l~~~~--~~ 259 (504)
T PLN02760 183 KKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLA-DNLENLILKEG--PE 259 (504)
T ss_pred CcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHH-HHHHHHHHhcC--CC
Confidence 345543 22221 0 00000 001 33555554210 12
Q ss_pred ceeEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEeccccccc-ccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 192 TVRAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQN-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
++.+|++.--..-.|.+ .+.+-+++|.++|++||+++|.||++..+ .. + . ... ...+|+ .. -+.
T Consensus 260 ~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRt-G-~----~~a-~e~~gv--~P-----Div 325 (504)
T PLN02760 260 TIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRL-G-T----MFG-CDKYNI--KP-----DLV 325 (504)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCccc-c-h----hhH-HHhcCC--CC-----cEE
Confidence 46666655334444654 46777999999999999999999999765 22 1 1 111 122222 11 247
Q ss_pred cCCcccCCCCC-ceeEEEEecCCChhHHHHHHhh--------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 041151 270 TVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI--------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG 340 (463)
Q Consensus 270 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (463)
+|+|.+ | .| +.+|.++ +++++.+.+... ...+++.++++..++.+.|+ .+++ ++
T Consensus 326 tlgK~l-g-gG~~PigAv~---~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le-----------~i~~-~~ 388 (504)
T PLN02760 326 SLAKAL-S-SAYMPIGAVL---VSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALK-----------IYKE-RN 388 (504)
T ss_pred Eecccc-c-CCccccceEe---ecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHH-----------HHHh-CC
Confidence 789999 4 45 4788888 588888887531 23467778888888887764 2221 24
Q ss_pred HHHHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh---HHHHHHHHHhcCeEeeCCC
Q 041151 341 ILESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD---VFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 341 ~~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~gI~v~pg~ 414 (463)
+.++.+++-++|.+.|+++ |-+.-+...| .++-+.+.-+... ......+ ...+...+.++||.+.+..
T Consensus 389 l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~G-l~~gie~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g 462 (504)
T PLN02760 389 IPEHVNKIAPRFQDGIKAFSGSPIIGEIRGTG-LILGTEFVDNKSP-----NDPFPAEWGVGAYFGAECKKRGMLVRVAG 462 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeeeEEeCc-eEEEEEEecCCcc-----cccccchhHHHHHHHHHHHhCCcEEEecC
Confidence 5666677777777766654 2122223334 3333223211100 0000001 2223455678899997621
Q ss_pred CCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhccc
Q 041151 415 GFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYEDY 457 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~~~ 457 (463)
..+|++.. .+++||++++++|.++++++.++.++-
T Consensus 463 --------~~lrl~Ppl~it~eeid~~~~~l~~al~~~~~~~~~~ 499 (504)
T PLN02760 463 --------DNIMMSPPLIITPEEVDELISIYGKALKATEERVAEL 499 (504)
T ss_pred --------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 25899977 899999999999999999887666553
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-12 Score=127.32 Aligned_cols=291 Identities=12% Similarity=0.115 Sum_probs=173.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+++++.+++.+.......|. .+.+.++++.+.+.. ..+.+++++++++|+..+++....-+| ++|+.
T Consensus 42 ~p~v~~ai~~ql~~~~~~~~~~~-----~~~~~~la~~l~~~~----~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~ 112 (364)
T PRK04013 42 HPEWVEEMSEQLEKLVVAGPMFE-----HEEKEEMLEELSKWV----NYEYVYMGNSGTEAVEAALKFARLYTGRKEIIA 112 (364)
T ss_pred CHHHHHHHHHHHHhcCCccCCcC-----CHHHHHHHHHHHhhc----CCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEE
Confidence 67888999888876311111222 234444555554331 236899999999999999997642345 77777
Q ss_pred c----cCcee---c-------CCCc-----------ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc-CCCHHHH
Q 041151 161 L----FHTTW---K-------RQQI-----------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ-CLSEANL 214 (463)
Q Consensus 161 p----~g~~~---~-------~~~~-----------~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~-~~s~~~l 214 (463)
. +|... . ...+ -.|. +.+++.+.+ ++.+|++.......|. ..+.+.+
T Consensus 113 ~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~-~~l~~~i~~------~~aAvivEpi~g~gG~~~~~~~yl 185 (364)
T PRK04013 113 MTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDV-EAAKEAITK------ETAAVIFEPIQGEGGIVPAKEEFV 185 (364)
T ss_pred ECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCH-HHHHHHhcC------CcEEEEEcCCcCCCCCcCCCHHHH
Confidence 5 22211 0 0001 1256 888888765 7899887755544454 4466779
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|.++|++||+++|+||++..+.. + . +... ..++. ..+ +-+++|.+ | .|+.+|.++. +.+
T Consensus 186 ~~lr~lc~~~gillI~DEv~tG~Rt-G-~----~~a~-~~~gv--~PD-----iv~~gK~l-g-gG~P~~a~~~---~~~ 246 (364)
T PRK04013 186 KTLRDLTEDVGALLIADEVQSGLRT-G-K----FLAI-EHYKV--EPD-----IVTMGKGI-G-NGVPVSLTLT---NFD 246 (364)
T ss_pred HHHHHHHHHcCCEEEEechhhcCCC-C-c----hhHH-HhcCC--CCC-----EEEecccc-c-CCceeEEEEe---ccc
Confidence 9999999999999999999987522 1 1 1111 11211 221 24569999 5 5899999984 554
Q ss_pred HHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEe
Q 041151 295 TVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSF 374 (463)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~ 374 (463)
+. . .....+++.++++..++.+.|+ .+++ +++.++.++. + ..+.. |-+.-+...| ++.-
T Consensus 247 ~~-~--~~~~~T~~gnp~~~aaa~a~l~-----------~i~~-~~l~~~~~~~---l-~~l~~-~~v~~vRG~G-l~~g 305 (364)
T PRK04013 247 VE-R--GKHGSTFGGNPLACKAVAVTLR-----------ILRR-ERLVEKAGEK---F-IEIKG-ERVVTTRGRG-LMIG 305 (364)
T ss_pred cc-C--CCcCCCCCcCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHH---H-HHhcc-CcceeeeeCc-EEEE
Confidence 41 1 1223477788888888888764 2221 1122222221 2 22222 2222233333 3433
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+++.. +... +...+.++|+.+.+. +.+.+|+... .+++++++++++|.+++.+.
T Consensus 306 --ve~~~------------~~~~-i~~~~~~~Gll~~~~-------g~~vlr~~Ppl~it~~~i~~~~~~l~~~l~~~ 361 (364)
T PRK04013 306 --IVLKK------------PVGK-YVEELQNRGYLVHTA-------GQRVIRLLPPLIISKDTMEEAKSAIEGVINDI 361 (364)
T ss_pred --EEeCC------------cHHH-HHHHHHhCCcEEeeC-------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHHH
Confidence 33321 1223 345567789999762 2247999999 79999999999999999764
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=132.43 Aligned_cols=306 Identities=13% Similarity=0.104 Sum_probs=180.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----CCC-
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----GEG- 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~~g- 155 (463)
++.+.+++.+++.+....... .. ..+.+..+++.+.+... ...+.+++++++++|++.+++.... ..|
T Consensus 61 ~p~i~~Ai~~q~~~~~~~~~~---~~-~~~~~~~la~~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r 134 (428)
T PRK07986 61 HPQLNAAMKSQIDAMSHVMFG---GI-THPPAIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGEPR 134 (428)
T ss_pred CHHHHHHHHHHHhhcCCcccc---cc-CCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 678999998888763111110 11 23455666666654321 1236899999999999999986531 122
Q ss_pred CEEEEc----cCcee-----cC-----------------------CCc-----ccChHHHHHHHHHHHHhcCCceeEEEE
Q 041151 156 DGVVLL----FHTTW-----KR-----------------------QQI-----GVLIINDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 156 d~Vlvp----~g~~~-----~~-----------------------~~~-----~~d~~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
.+|+.- +|... .. ..+ .-|. +.+++.++.. +.++.+|++
T Consensus 135 ~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~-~~l~~~l~~~---~~~iaavi~ 210 (428)
T PRK07986 135 QRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDI-APFARLMAAH---RHEIAAVIL 210 (428)
T ss_pred cEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHH-HHHHHHHHhC---CCcEEEEEE
Confidence 455554 22211 00 000 0144 6677777532 124566666
Q ss_pred ECC-CCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccC
Q 041151 199 INP-GNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYW 276 (463)
Q Consensus 199 ~~p-~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 276 (463)
... +.-.|. ..+++.+++|.++|++||+++|+||++..+.- .+... .. . .+|+ .. .|+ +++|.+
T Consensus 211 Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~Gr-tG~~f-a~-~---~~gv--~P---Di~--t~gK~l- 276 (428)
T PRK07986 211 EPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGR-TGKLF-AC-E---HAGI--AP---DIL--CLGKAL- 276 (428)
T ss_pred echhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCcc-CCCee-ee-c---ccCC--CC---CEE--Eechhh-
Confidence 542 443454 44668899999999999999999999965422 11110 11 1 1111 12 133 589999
Q ss_pred CCCC-ceeEEEEecCCChhHHHHHHhh------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 041151 277 GECG-QRGGYFEMTNIPPKTVDEIYKI------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRA 349 (463)
Q Consensus 277 g~~G-~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (463)
+ .| +.+|.++ +++++.+.+... ...+++.+++...++.+.|+ .+++ ..+.++.+++-
T Consensus 277 ~-gG~~p~~av~---~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~-----------~i~~-~~~~~~~~~~g 340 (428)
T PRK07986 277 T-GGTMTLSATL---TTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLS-----------LLES-GDWQQQVAAIE 340 (428)
T ss_pred h-CCcccCcchh---chHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHH
Confidence 4 57 5788887 588888888642 22456677777777777763 2221 23456666666
Q ss_pred HHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEE
Q 041151 350 RMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLR 426 (463)
Q Consensus 350 ~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lR 426 (463)
+++.+.|+++ |.+.-+...| ++.-+.+..+. ....+...+.++||++.+. + +.+|
T Consensus 341 ~~l~~~l~~l~~~~~i~~vRg~G-l~~~ve~~~~~-------------~~~~~~~~l~~~Gl~~~~~---g-----~~i~ 398 (428)
T PRK07986 341 AQLREELAPLRDAPMVADVRVLG-AIGVVETTRPV-------------NMAALQRFFVEQGVWIRPF---G-----KLIY 398 (428)
T ss_pred HHHHHHHHHHhcCCCEEeEeccc-eEEEEEeCCcc-------------cHHHHHHHHHHCCcEEEec---C-----CEEE
Confidence 7777777654 2222222223 33333232121 1223445577889999773 1 2699
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
++.. .+++++++++++|.+++++
T Consensus 399 ~~Ppl~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 399 LMPPYIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9877 8999999999999998854
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=131.79 Aligned_cols=308 Identities=13% Similarity=0.068 Sum_probs=182.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+.+.+.......+. ..+.+..+|+.+.+... ...+.+++++++++|+..+++.... .+|
T Consensus 62 ~p~v~~ai~~q~~~~~~~~~~~~----~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~ 135 (429)
T PRK06173 62 HPRLNAAATNQLAKMSHIMFGGF----THEPAVELAQKLLEILP--PSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQ 135 (429)
T ss_pred CHHHHHHHHHHHHhcCCcccccc----CCHHHHHHHHHHHhhCC--CCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCC
Confidence 67889999888876311111011 12344455555543311 1236899999999999999886531 133
Q ss_pred -CEEEEc----cCcee-----cC--C----Ccc----------------------cChHHHHHHHHHHHHhcCCceeEEE
Q 041151 156 -DGVVLL----FHTTW-----KR--Q----QIG----------------------VLIINDLQQSVAQARSKGITVRAMV 197 (463)
Q Consensus 156 -d~Vlvp----~g~~~-----~~--~----~~~----------------------~d~~~~l~~~l~~~~~~~~~~~~i~ 197 (463)
.+|+.- +|... .. . .+. -++ +.|++.+... +.++.+|+
T Consensus 136 r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l-~~l~~~i~~~---~~~iAAvi 211 (429)
T PRK06173 136 RTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAI-EPLQDLLEQK---GDEIAALI 211 (429)
T ss_pred CcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHH-HHHHHHHHhC---CCcEEEEE
Confidence 345443 33221 00 0 000 024 5666776531 22677877
Q ss_pred EECC-CCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCccc
Q 041151 198 IINP-GNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275 (463)
Q Consensus 198 l~~p-~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 275 (463)
+.-- ..-.|.. .+.+-+++|.++|++||+++|+||++..+.- .. ..+.. ..+++ .. .|+ +|+|.+
T Consensus 212 ~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~Gr---tG-~~~a~--~~~gv--~P---Div--~~gK~l 278 (429)
T PRK06173 212 LEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGR---TG-KLFAL--EHAGV--VP---DIM--CIGKAL 278 (429)
T ss_pred EcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCc---CC-cchHH--HhcCC--CC---CEE--Eeehhh
Confidence 7642 4545655 6788899999999999999999999965311 11 11111 12211 11 233 499999
Q ss_pred CCCCC-ceeEEEEecCCChhHHHHHHhh------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 041151 276 WGECG-QRGGYFEMTNIPPKTVDEIYKI------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRR 348 (463)
Q Consensus 276 ~g~~G-~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (463)
+ .| +.++.++ .++++.+.+... ...++..+++...++.+.|+ .+++ +..+++.+++
T Consensus 279 -~-gG~~p~~a~~---~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~-----------~i~~-~~~~~~~~~~ 341 (429)
T PRK06173 279 -T-GGYLTLSATI---TTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIR-----------LLLE-SPWQQNIQRI 341 (429)
T ss_pred -h-CCccccceEE---ecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHH
Confidence 4 57 4678777 488888877531 12345567777777777653 2222 1356677777
Q ss_pred HHHHHHHhhcCCCcccc---cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEE
Q 041151 349 ARMMTDGFNSCRNVVCN---FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHL 425 (463)
Q Consensus 349 ~~~l~~~L~~~pg~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~l 425 (463)
-++|.+.|+++.++..+ ...| ++.-+.+..+. ....+...|.++||++.+. + +.+
T Consensus 342 g~~l~~~L~~~~~~~~v~~vRg~G-l~~~iel~~~~-------------~~~~i~~~l~e~Gi~v~~~---g-----~~l 399 (429)
T PRK06173 342 EAQLKQELAPAAEFDSVAEVRVLG-AIGVVEMKEPV-------------NMATLQPRFVEHGIWVRPF---G-----KLV 399 (429)
T ss_pred HHHHHHHHHHhhcCCCeeeeeccc-eEEEEEeCCcc-------------cHHHHHHHHHHCCeEEEec---C-----CEE
Confidence 77888877754222222 2233 33333232111 1223455677889999773 1 269
Q ss_pred EEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 426 RTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 426 Ris~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|+... .+++|+++++++|.+++.+.+
T Consensus 400 ~~~Ppl~it~~ei~~~~~~l~~~l~~~~ 427 (429)
T PRK06173 400 YIMPPFIISPDELSQLTSGLLRVLKQEY 427 (429)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999 799999999999999997654
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-12 Score=123.19 Aligned_cols=291 Identities=12% Similarity=0.053 Sum_probs=161.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCC----cEEEcCCcHHHHHHHHHHHh
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPE----LIFLTDGASKGVMQTLNCVI 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~----~i~~t~G~~~al~~~~~~l~ 151 (463)
++.+.+++...+.+. ...+|+. .+-..++.+...+...+.++. .++ +|-.- +++.|...++.+|+
T Consensus 33 Sp~v~~al~S~l~nk--yaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~--~~~~w~anvqp~-SGs~An~av~~aLl 107 (399)
T PF00464_consen 33 SPAVREALGSDLTNK--YAEGYPGKRYYGGCEYIDEIEELAIERAKELFGA--EPKEWYANVQPH-SGSQANLAVYMALL 107 (399)
T ss_dssp -HHHHHHHTSGGGGS---TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT---STTTEEEE---S-SHHHHHHHHHHHHT
T ss_pred CHHHHHHhCCcceee--ccccCCCcccccCcchhhHHHHHHHHHHHHHhCC--CcccceEEeecC-CchHHHHHHHHHHH
Confidence 667777776655542 2223332 222234444444445555553 333 33333 55779999999998
Q ss_pred cCCCCEEEEc---cCcee-------------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCC
Q 041151 152 RGEGDGVVLL---FHTTW-------------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGN 203 (463)
Q Consensus 152 ~~~gd~Vlvp---~g~~~-------------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~N 203 (463)
+|||+|+.. .|+.+ ..+...+|. +++++.+... +||+|++..-++
T Consensus 108 -~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~-d~l~~~a~~~-----kPklIi~G~S~y 180 (399)
T PF00464_consen 108 -KPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDY-DELEKLAKEH-----KPKLIICGASSY 180 (399)
T ss_dssp --TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-H-HHHHHHHHHH-------SEEEEE-SST
T ss_pred -hhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECH-HHHHHHHhhc-----CCCEEEECchhc
Confidence 999999985 33221 245788999 9999999987 899998775555
Q ss_pred CCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee
Q 041151 204 PTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG 283 (463)
Q Consensus 204 PtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 283 (463)
| .. -+.+++.++|.+.|.+|++|-+|-......+ ..++.... . .|+.+|.+|+| +|=|.
T Consensus 181 ~--~~---~d~~~~reIad~vga~l~~D~sH~~GLIa~g-~~~~P~~~--------A----Dvvt~sThKtl---~GPrg 239 (399)
T PF00464_consen 181 P--RP---IDFKRFREIADEVGAYLMADISHIAGLIAGG-LFPNPFPY--------A----DVVTGSTHKTL---RGPRG 239 (399)
T ss_dssp S--S------HHHHHHHHHHTT-EEEEE-TTTHHHHHTT-SS--GCCT--------S----SEEEEESSGGG----SSS-
T ss_pred c--Cc---cCHHHHHHHHHhcCcEEEecccccccceehh-eecCcccc--------c----eEEEeeccccc---cccCc
Confidence 4 22 3477777788899999999999964332122 22222111 1 27889999998 68888
Q ss_pred EEEEecCCC--------------hhHHHHHHhhhh-hcccCChHHHHHHH-HhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 041151 284 GYFEMTNIP--------------PKTVDEIYKIAS-IALSPNVPAQIFMG-LMVNPLKPGDISYEQFVRESKGILESLRR 347 (463)
Q Consensus 284 G~~~~~~~~--------------~~~~~~l~~~~~-~~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (463)
|.+.+ + +++.+++.+.-. ...+.+.....++. .++.. . ...+.++-.++..+
T Consensus 240 giI~~---~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~e------a---~~~~fk~Ya~qVv~ 307 (399)
T PF00464_consen 240 GIILT---NKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKE------A---LSPEFKEYAKQVVK 307 (399)
T ss_dssp EEEEE---S-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHH------H---TSHHHHHHHHHHHH
T ss_pred eEEEE---cCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhc------c---cCHHHHHHHHHHHH
Confidence 99996 4 778888876543 22232333333332 22210 0 00112334556788
Q ss_pred HHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC--CCCCcE
Q 041151 348 RARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ--KEGIFH 424 (463)
Q Consensus 348 ~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--~~~~~~ 424 (463)
|.+.|.+.|.+. |+++.. ...+..+|++++-. + -+...+...|++.||.+..-...+. +-....
T Consensus 308 NAk~La~~L~~~-G~~v~~ggTd~H~vlvd~~~~-~-----------~~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sG 374 (399)
T PF00464_consen 308 NAKALAEALQER-GFKVVTGGTDNHQVLVDLRSF-G-----------IDGKEAEKALEEAGIIVNKNTIPGDRSPFVPSG 374 (399)
T ss_dssp HHHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGGG-T-----------S-HHHHHHHHHHTTEE-EEE--TTTSTTTT-SE
T ss_pred HHHHHHHHHhhC-CcEEEECCCCCCeEEEEeccc-c-----------cchHHHHHHHHhcCeeecccccCCCCCCCCCCE
Confidence 899999999998 888874 23345677776511 1 1345567889999999863211111 111246
Q ss_pred EEEEec
Q 041151 425 LRTTIL 430 (463)
Q Consensus 425 lRis~~ 430 (463)
+||+..
T Consensus 375 lRlGT~ 380 (399)
T PF00464_consen 375 LRLGTP 380 (399)
T ss_dssp EEEESH
T ss_pred EEECCH
Confidence 999988
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-12 Score=131.20 Aligned_cols=325 Identities=13% Similarity=0.066 Sum_probs=187.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+++.+.. ....+ .....+.+.++++.+.+... -.-+.|++++++++|+..+++.... .+|
T Consensus 66 ~p~i~~Ai~~q~~~~~-~~~~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~ 140 (460)
T PRK06105 66 EQRLVEAAARQMKKLP-FYHTF--SHKSHGPVIDLAEKLVAMAP--VPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPE 140 (460)
T ss_pred CHHHHHHHHHHHHhCC-Ceecc--cccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 7889999998887631 01111 11123444556666654321 1235899999999999999997420 123
Q ss_pred -CEEEEc----cCcee--------c--CCCccc-----------------------------ChHHHHHHHHHHHHhcCC
Q 041151 156 -DGVVLL----FHTTW--------K--RQQIGV-----------------------------LIINDLQQSVAQARSKGI 191 (463)
Q Consensus 156 -d~Vlvp----~g~~~--------~--~~~~~~-----------------------------d~~~~l~~~l~~~~~~~~ 191 (463)
.+|+.- +|... + ...+++ .. +.+++.+... ...
T Consensus 141 r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~le~~~~~~--~~~ 217 (460)
T PRK06105 141 KKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLA-NELEALILAE--GPD 217 (460)
T ss_pred CcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHH-HHHHHHHHHc--CCC
Confidence 345553 22221 0 000100 12 4566665421 012
Q ss_pred ceeEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 192 TVRAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
++.+|++.--..--|.. .+.+-+++|.++|++||+++|.||++..+.-.+ . +... ..+++ ..+ +.+
T Consensus 218 ~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG-~----~f~~-~~~~v--~PD-----i~~ 284 (460)
T PRK06105 218 TIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG-N----MFGC-ETFGI--KPD-----ILV 284 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCc-h----hhhH-HhcCC--CCC-----eee
Confidence 56777666444444654 578889999999999999999999997652211 1 1111 12211 111 347
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHhh--------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI--------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
+||.+ + .| +.+|.++ +++++.+.+... ...+++.+++...++.+.|+ ++++ +++
T Consensus 285 ~gK~l-g-gG~~P~~av~---~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~-----------~i~~-~~l 347 (460)
T PRK06105 285 MSKQL-S-SSYQPLSAVL---MNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLA-----------IIEE-RDL 347 (460)
T ss_pred eeccc-c-cCcccceEEE---EcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHH-----------HHHh-ccH
Confidence 89999 4 45 5899998 588888877532 12366778888888777763 2222 245
Q ss_pred HHHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCC
Q 041151 342 LESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~ 415 (463)
.++.+++-++|.+.|+++ |.+.-+...| ++.-+.+..+.. +.....+ ....+...+.++||.+.+.
T Consensus 348 ~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~G-l~~gie~~~~~~-----~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~-- 419 (460)
T PRK06105 348 VGNAAERGARLQARLRALADHPLVGEVRGVG-LIAAVELVADKA-----TKTPFEPPGKVGARANAAAHEHGVISRAM-- 419 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEEEecc-eEEEEEEecCcc-----cCCCCCchhHHHHHHHHHHHHCCeEEEec--
Confidence 566666777777777654 2222223333 333333321100 0000000 1123445567899999872
Q ss_pred CCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhccccC
Q 041151 416 FGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYEDYRG 459 (463)
Q Consensus 416 f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~~~~~ 459 (463)
+ +.+|++.. .+++|+++++++|.++++++.+ +.-.++
T Consensus 420 -g-----~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~-~~~~~~ 458 (460)
T PRK06105 420 -G-----DTLAFCPPLIITAAQVDEMVDRFGRALDDVAA-WVAAGG 458 (460)
T ss_pred -C-----CEEEEECCCccCHHHHHHHHHHHHHHHHHHHH-HHhhcC
Confidence 1 26999988 5999999999999999998765 443333
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-11 Score=122.53 Aligned_cols=314 Identities=11% Similarity=0.039 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCcc------CCCCCCHHHHHHHHHHHHHhcCCCCC-C-CcEEEcCCcHHHHHHHHHHHhcC
Q 041151 82 PADAIARAKHYLSLTSGGLGAY------SDSRGIPGVRKEVAEFIERRDGYPSD-P-ELIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y------~~~~g~~~lr~~ia~~~~~~~g~~~~-~-~~i~~t~G~~~al~~~~~~l~~~ 153 (463)
++.+++++-..+.+. ...+| +..+.+.++.....+...+.+|.+.. . .+|..-+| +.|...++.+|+ +
T Consensus 161 S~av~~algS~ltnk--YaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SG-s~AN~aV~~ALl-~ 236 (586)
T PLN02271 161 CRAVMEALGSHLTNK--YSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSC-TSANFAVYTGLL-L 236 (586)
T ss_pred CHHHHHHhcCccccc--CCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccH-HHHHHHHHHHhc-C
Confidence 677777776655542 22233 33333334544444455455554321 1 46776655 678999999998 9
Q ss_pred CCCEEEEc---cCce-------------------e-------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCC
Q 041151 154 EGDGVVLL---FHTT-------------------W-------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNP 204 (463)
Q Consensus 154 ~gd~Vlvp---~g~~-------------------~-------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NP 204 (463)
|||+|+.. +|+. + ......+|. +++++..... ++|+|++..-.||
T Consensus 237 PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDy-d~lek~a~~~-----rPKLII~g~Sayp 310 (586)
T PLN02271 237 PGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDY-DKLEEKALDF-----RPKILICGGSSYP 310 (586)
T ss_pred CCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCH-HHHHHHhhhc-----CCeEEEECchhcc
Confidence 99999994 2211 1 134467899 9999955443 8999988777777
Q ss_pred CccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeE
Q 041151 205 TGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG 284 (463)
Q Consensus 205 tG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 284 (463)
..++ ++++.++|+++|+++++|.+|.......+ ...+.. .. -.|+.+|.+|++. |=|.|
T Consensus 311 --r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g-~~~sP~----------~~--aDvvt~TTHKtLr---GPrGG 369 (586)
T PLN02271 311 --REWD---YARFRQIADKCGAVLMCDMAHISGLVAAK-ECVNPF----------DY--CDIVTSTTHKSLR---GPRGG 369 (586)
T ss_pred --CcCC---HHHHHHHHHHcCCEEEEECcccccccccC-cCCCCC----------cC--CcEEEeCCcccCC---CCCce
Confidence 5555 66677788899999999999986655222 111111 11 2389999999984 55668
Q ss_pred EEEecCC-----------------ChhHHHHHHhhh-h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 041151 285 YFEMTNI-----------------PPKTVDEIYKIA-S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL 345 (463)
Q Consensus 285 ~~~~~~~-----------------~~~~~~~l~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (463)
.+++.++ .+++.+++.+.- . ...++.....++.+.+++... ...| +.-.++.
T Consensus 370 ~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~--~~ef-------k~Ya~QV 440 (586)
T PLN02271 370 IIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVA--TPEY-------KAYMQQV 440 (586)
T ss_pred EEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHh--ChHH-------HHHHHHH
Confidence 8886211 012444443322 2 112222222222233332100 0112 3345567
Q ss_pred HHHHHHHHHHhhcCCCcccccC-CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC--CCC
Q 041151 346 RRRARMMTDGFNSCRNVVCNFT-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK--EGI 422 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~--~~~ 422 (463)
.+|.+.|.+.|.+. |++++.. ..+..++++++-- + -+...+.+.|++.||.+.--..++.. -..
T Consensus 441 v~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~-g-----------~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~~p 507 (586)
T PLN02271 441 KKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTL-G-----------LTGKNYEKVCEMCHITLNKTAIFGDNGTISP 507 (586)
T ss_pred HHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCccc-C-----------CCHHHHHHHHHHcCeEeccccCCCCCCCCCC
Confidence 88899999999887 8887752 2345667666411 1 13456788899999998642222221 112
Q ss_pred cEEEEEec------CCcCcHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL------PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 423 ~~lRis~~------~~~e~i~~~~~~l~~~l~ 448 (463)
+.+||... ..++|+++..+-|.++++
T Consensus 508 sGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 508 GGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 35999877 456788887777777765
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-11 Score=119.52 Aligned_cols=275 Identities=9% Similarity=-0.019 Sum_probs=166.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcE--EEcCCcHHHHHHHHHHHh-cCCCCEEEEc-------------cCcee----cC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELI--FLTDGASKGVMQTLNCVI-RGEGDGVVLL-------------FHTTW----KR 168 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~-~~~gd~Vlvp-------------~g~~~----~~ 168 (463)
..++.+++.+++.+..|. +++++ ++|+|+++++..++.+.. ..++++|+++ .|... ..
T Consensus 63 ~~~~e~~~~~~~a~l~g~--~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~ 140 (380)
T PRK02769 63 SFDFERDVMNFFAELFKI--PFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSL 140 (380)
T ss_pred hHHHHHHHHHHHHHHhCC--CCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccC
Confidence 355666666666666564 34444 889999999876655431 1477888886 33222 33
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC---eEEEecccccccccCCCCCc
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN---LVLLGDEVYQQNIYQDERPF 245 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~---~~vi~Deay~~~~~~~~~~~ 245 (463)
..+.+|+ +.|++.+++. +.++.+|+++.++|+||.+-+ +++|.++|++++ +++.+|.+|+.+...-....
T Consensus 141 ~~g~id~-~~L~~~i~~~---~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~ 213 (380)
T PRK02769 141 PNGEIDY-DDLISKIKEN---KNQPPIIFANIGTTMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNP 213 (380)
T ss_pred CCCcCcH-HHHHHHHHhC---CCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCcc
Confidence 4567999 9999999872 224899999999999999977 677777888997 79999999987543100000
Q ss_pred cchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh------hh--cccCChHHHHHH
Q 041151 246 VSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA------SI--ALSPNVPAQIFM 317 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~------~~--~~~~~~~~q~~~ 317 (463)
..+ .. .. +-..+..|.+|.++++.| +|.+++ .++..+.+.... .. ..+.+.....++
T Consensus 214 ~~~-d~--------~~-~vDsis~s~HK~~~~P~g--~G~l~~---r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~l 278 (380)
T PRK02769 214 PPF-SF--------AD-GIDSIAISGHKFIGSPMP--CGIVLA---KKKYVERISVDVDYIGSRDQTISGSRNGHTALLL 278 (380)
T ss_pred ccC-Cc--------cC-CCCEEEECCcccCCCCCC--cEEEEE---ehhhhhhcccCccccCCCCCCccCCCCcHHHHHH
Confidence 011 00 11 123567899998732445 888886 444555442110 01 122233334444
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChH
Q 041151 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (463)
...|+... ..-.+++.++..+..+++.+.|++. |+.+. .|......| +.| +.
T Consensus 279 w~aL~~lg---------~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f---~~~--------------~~ 331 (380)
T PRK02769 279 WAAIRSLG---------SKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVF---PCP--------------SE 331 (380)
T ss_pred HHHHHHHC---------HHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEE---cCC--------------CH
Confidence 44442110 1124556777788888999999886 77654 454444433 432 11
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 397 FYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 397 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
.. . .|..+.+-. .++||++. .+.+.++.+++.|...+.
T Consensus 332 ~~----~--~~w~l~~~~--------~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 332 RI----W--KKWHLATSG--------NQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred HH----H--hCeeEcccC--------CEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 21 1 455555421 26899999 566677777777766554
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-12 Score=118.87 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------------cCCCcc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------------KRQQIG 172 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------------~~~~~~ 172 (463)
...|.+.||..-+ |. .-+-+++++.|+..++..++ .+||.|+.. +|+.. ......
T Consensus 64 ~~vlE~RiAaLEG---G~-----aa~a~aSG~AA~~~ai~~la-~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~ 134 (426)
T COG2873 64 TDVLEERIAALEG---GV-----AALAVASGQAAITYAILNLA-GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP 134 (426)
T ss_pred HHHHHHHHHHhhc---ch-----hhhhhccchHHHHHHHHHhc-cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCC
Confidence 4678888888764 21 23445667999999999998 999999886 66654 111233
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
.|+ +.+++++++ ++|+|++..-.||.+.+.+ +++|+++|+++++.+|+|..+....+ ..++..
T Consensus 135 ~d~-~~~~~aI~~------nTkavf~EtigNP~~~v~D---ie~ia~iAh~~gvpliVDNT~atpyl-----~rP~~h-- 197 (426)
T COG2873 135 DDP-ENFEAAIDE------NTKAVFAETIGNPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATPYL-----CRPIEH-- 197 (426)
T ss_pred CCH-HHHHHHhCc------ccceEEEEeccCCCccccC---HHHHHHHHHHcCCcEEEecCCCccee-----cchhhc--
Confidence 467 999999999 8999999999999999977 88899999999999999999875322 112211
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
.. .|+++|.||++ |-.|--+|=+++..
T Consensus 198 -------GA---DIVvHS~TK~i-gGhGt~iGG~iVD~ 224 (426)
T COG2873 198 -------GA---DIVVHSATKYI-GGHGTAIGGVIVDG 224 (426)
T ss_pred -------CC---CEEEEeecccc-cCCccccceEEEeC
Confidence 22 38899999999 77898888888743
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-12 Score=129.90 Aligned_cols=313 Identities=14% Similarity=0.114 Sum_probs=179.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----C-CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----G-EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~-~g 155 (463)
++.+.+++.+.+.+.. ....+ .-..+.+..+|+.+.+... -..+.|++++++++++..+++.... . +|
T Consensus 64 ~p~v~~ai~~ql~~l~-~~~~~---~~~~~~~~~la~~l~~~~p--~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~ 137 (442)
T PRK13360 64 RPEIVEAVRAQAGELD-YAPAF---QMGHPKAFELANRIAEIAP--GGLNHVFFTNSGSESVDTALKIALAYHRARGEGS 137 (442)
T ss_pred CHHHHHHHHHHHHhCC-CcccC---CcCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 6789999988887621 01111 1113445566666654311 1235899999999999999886431 0 22
Q ss_pred -CEEEEc----cCcee-------------------------cCC-C-----ccc--------ChHHHHHHHHHHHHhcCC
Q 041151 156 -DGVVLL----FHTTW-------------------------KRQ-Q-----IGV--------LIINDLQQSVAQARSKGI 191 (463)
Q Consensus 156 -d~Vlvp----~g~~~-------------------------~~~-~-----~~~--------d~~~~l~~~l~~~~~~~~ 191 (463)
.+|+.- +|... +.. . +.. .. +.|++.+.... ..
T Consensus 138 r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~le~~l~~~~--~~ 214 (442)
T PRK13360 138 RTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELA-DELERLVTLHD--AS 214 (442)
T ss_pred CcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHH-HHHHHHHHhcC--CC
Confidence 456554 33211 000 0 000 13 46677665321 12
Q ss_pred ceeEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 192 TVRAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
++.+|++.....-.|.. .+.+-+++|.++|++||+++|+||++..+.-.+ .. +.. ..+++ .. .| .+
T Consensus 215 ~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG-~~---~a~--~~~gv--~P---Di--vt 281 (442)
T PRK13360 215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLG-AP---FAA--QYFGV--TP---DL--LT 281 (442)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCc-cc---hhh--hhcCC--CC---ce--ee
Confidence 46666655445445665 466779999999999999999999997642211 11 111 11211 11 12 48
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHhh--------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI--------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
+||.+ + .| +.+|.++ .++++.+.+..- ...+++.+++...++.+.|+ .+++ +.+
T Consensus 282 ~gK~l-~-gG~~P~gav~---~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~-----------~l~~-~~l 344 (442)
T PRK13360 282 CAKGL-T-NGAIPMGAVF---VSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLD-----------LYER-EGL 344 (442)
T ss_pred eeecc-c-cCccceEEEE---EcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHH-----------HHHh-CCH
Confidence 89998 4 35 6888888 488888777431 22356677888777777763 2222 235
Q ss_pred HHHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 342 LESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
.++.+++-+++.+.|+++ |.+.-+...| ++.-+.+..... +.......+...+.++||++.++.
T Consensus 345 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~G-l~~~~~l~~~~~--------~~~~~~~~~~~~l~~~Gvl~~~~~---- 411 (442)
T PRK13360 345 LTRAARLAPYWEDALHSLRDAPHVIDIRNLG-LVGAVELAPRDG--------KPGKRAYEVFLKCFEKGLMIRYTG---- 411 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeeeeeccc-eEEEEEEecCCC--------CcchhHHHHHHHHHHCCcEEEecC----
Confidence 566677777777777654 2221122223 222222211000 000112223345677899997631
Q ss_pred CCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 419 ~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
..+||+.. .+++|+++++++|.++++++
T Consensus 412 ----~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 412 ----DILALSPPLIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred ----CEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence 26999977 89999999999999998653
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-12 Score=129.79 Aligned_cols=304 Identities=13% Similarity=0.100 Sum_probs=176.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---C---CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---G---EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~---~g 155 (463)
++.+.+++.+++.+... ..+... ..+.+.++++.+.+... -.-+.+++++++++|+..+++.... . ++
T Consensus 58 ~p~i~~ai~~q~~~~~~--~~~~~~--~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~ 131 (422)
T PRK05630 58 HPRLKAAAHKQIDTMSH--VMFGGL--THEPAIKLTRKLLNLTD--NGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPE 131 (422)
T ss_pred CHHHHHHHHHHHHhCCC--cccCCc--CCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 67899999888876311 111101 12344556666544311 1236899999999999999986431 1 23
Q ss_pred -CEEEEc----cCcee-----cC---------------------CC-cccCh------HHHHHHHHHHHHhcCCceeEEE
Q 041151 156 -DGVVLL----FHTTW-----KR---------------------QQ-IGVLI------INDLQQSVAQARSKGITVRAMV 197 (463)
Q Consensus 156 -d~Vlvp----~g~~~-----~~---------------------~~-~~~d~------~~~l~~~l~~~~~~~~~~~~i~ 197 (463)
.+|+.- +|... .. .. ...+. .+.+++.+.+ ++.+|+
T Consensus 132 r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~iAAvi 205 (422)
T PRK05630 132 RTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE------TVAAII 205 (422)
T ss_pred CcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh------ceEEEE
Confidence 345553 33221 00 00 01111 0233444433 688887
Q ss_pred EEC-CCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCccc
Q 041151 198 IIN-PGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275 (463)
Q Consensus 198 l~~-p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 275 (463)
+.- ...-.|.. .+.+-+++|.++|++|++++|.||++..+.-. + ..... ..+++ .. .|+ +++|.+
T Consensus 206 ~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~Grt-G----~~~a~-~~~gv--~P---Di~--t~gK~l 272 (422)
T PRK05630 206 IEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRT-G----ELFAT-LAAGV--TP---DIM--CVGKAL 272 (422)
T ss_pred EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcC-c----hhhHH-HhcCC--CC---Cee--eeechh
Confidence 774 24545664 56778999999999999999999999764221 1 11111 11211 12 133 789988
Q ss_pred CCCCC-ceeEEEEecCCChhHHHHHHhh-------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 041151 276 WGECG-QRGGYFEMTNIPPKTVDEIYKI-------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRR 347 (463)
Q Consensus 276 ~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (463)
+ .| ..+|+++ +++++.+.+... ...+++.+++...++.+.|+ .+++ +..+++.++
T Consensus 273 -~-gG~~p~~av~---~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~-----------~l~~-~~~~~~~~~ 335 (422)
T PRK05630 273 -T-GGFMSFAATL---CTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLE-----------IIET-GMWRKQVKR 335 (422)
T ss_pred -h-cCccccceee---ccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHH-----------HHHh-CcHHHHHHH
Confidence 3 46 4788888 588888887531 12466777878777777763 2221 133445566
Q ss_pred HHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcE
Q 041151 348 RARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFH 424 (463)
Q Consensus 348 ~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~ 424 (463)
+.+++.+.|+++ |.+.-+...| ++.-+.+.-+. +...+...+.++||++.+. + +.
T Consensus 336 ~g~~l~~~L~~l~~~~~v~~vRg~G-l~~~ie~~~~~-------------~~~~~~~~~~~~Gl~~~~~-------g-~~ 393 (422)
T PRK05630 336 IEAELIAGLSPLAHLPGVADVRVLG-AIGVVEMEQPV-------------DMEEATQAAVDHGVWLRPF-------G-RL 393 (422)
T ss_pred HHHHHHHHHHHhhcCCCeeeeeccc-cEEEEEECCcc-------------cHHHHHHHHHHCCeEEEec-------C-CE
Confidence 666666655543 3332222333 33333332111 1223445677889999762 1 36
Q ss_pred EEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 425 LRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 425 lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
+|+..+ .+++++++++++|.++++.
T Consensus 394 l~~~PpL~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 394 VYVMPPYITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHhc
Confidence 899988 8999999999999998854
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-12 Score=128.13 Aligned_cols=323 Identities=14% Similarity=0.093 Sum_probs=182.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----C-CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----G-EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~-~g 155 (463)
++.+.+++.+++.... +.........+.+..+|+.+.+... -.-+.+++++++++|+..+++.... . +|
T Consensus 68 ~p~v~~Ai~~q~~~~~---~~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~ 142 (456)
T PRK07480 68 RKELADAAARQMRELP---YYNTFFKTTHPPAIELAAKLAEVAP--PGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQ 142 (456)
T ss_pred CHHHHHHHHHHHHhcC---CcccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 6789999988887631 1001001123555666666654321 1235899999999999999986531 1 33
Q ss_pred C-EEEEc----cCcee--------c---------CCC-------c------ccCh-------HHHHHHHHHHHHhcCCce
Q 041151 156 D-GVVLL----FHTTW--------K---------RQQ-------I------GVLI-------INDLQQSVAQARSKGITV 193 (463)
Q Consensus 156 d-~Vlvp----~g~~~--------~---------~~~-------~------~~d~-------~~~l~~~l~~~~~~~~~~ 193 (463)
. +|+.- +|... . ..+ + ..+. ++.+++.+... ...++
T Consensus 143 r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~v 220 (456)
T PRK07480 143 KKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL--GADNV 220 (456)
T ss_pred CcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc--CCCcE
Confidence 3 45443 22211 0 000 0 0011 03444444321 11267
Q ss_pred eEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 194 RAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 194 ~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
.+|++.-...-.|.+ .+.+-+++|.++|++||+++|.||++..+.-.+ ..... ..+|+ ..+ +.+|+
T Consensus 221 AAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG-----~~~a~-~~~gv--~PD-----iv~~g 287 (456)
T PRK07480 221 AAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG-----EWFGS-QHFGI--KPD-----LMTIA 287 (456)
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCc-----chhhh-hhcCC--CCC-----eeeee
Confidence 787776444435664 466679999999999999999999998752111 11111 12211 221 25689
Q ss_pred cccCCCCCc-eeEEEEecCCChhHHHHHHh----h-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH-
Q 041151 273 KGYWGECGQ-RGGYFEMTNIPPKTVDEIYK----I-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL- 345 (463)
Q Consensus 273 K~~~g~~G~-R~G~~~~~~~~~~~~~~l~~----~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 345 (463)
|.+ + .|. .+|.++ +++++.+.+.. . ...+++.+++...++.+.|+ .+++ +.+.++.
T Consensus 288 K~l-~-gG~~Pi~av~---~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~-----------~l~~-~~l~~~~~ 350 (456)
T PRK07480 288 KGL-T-SGYIPMGAVG---VGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLR-----------ILRD-EGIVERVR 350 (456)
T ss_pred hhh-c-cCCccceEEE---EcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHHHH
Confidence 998 4 464 789888 48888887731 1 22477888888888888874 2221 1234444
Q ss_pred HHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCCCCCC
Q 041151 346 RRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSGFGQK 419 (463)
Q Consensus 346 ~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f~~~ 419 (463)
+++-++|.+.|+++ |-+.-+...| ++.-+.+..+... .....+ ....+...+.++||.+.+. +
T Consensus 351 ~~~g~~l~~~l~~l~~~~~i~~vrG~G-lm~gie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Gll~~~~---~-- 419 (456)
T PRK07480 351 DDTGPYLQKRLRELADHPLVGEVRGVG-LVGAIELVKDKAT-----RERFEAGGGVGTICRDHCFANGLIMRAV---G-- 419 (456)
T ss_pred HHHHHHHHHHHHHhhcCCCeeeEEeec-ceEEEEEeccccc-----cccCcchhhHHHHHHHHHHHCCcEEeec---C--
Confidence 34445555555443 2222223334 3333333211100 000000 1233445567899999752 1
Q ss_pred CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhc
Q 041151 420 EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYE 455 (463)
Q Consensus 420 ~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~ 455 (463)
+.+|++.. .+++++++++++|.+++.++.++++
T Consensus 420 ---~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~~~~ 454 (456)
T PRK07480 420 ---DRMIISPPLVITHAEIDELVEKARKALDATAAELG 454 (456)
T ss_pred ---CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 25899988 5999999999999999998876543
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-11 Score=126.35 Aligned_cols=318 Identities=13% Similarity=0.094 Sum_probs=182.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++.... +....-..+.+.++++.+.+..+ -..+.+++++++++++..+++.... ....+|+.
T Consensus 89 ~p~v~~Ai~~ql~~~~-----~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~ 161 (459)
T PRK06082 89 HPHVIEKVKEQMAKLP-----FSPRRFTNETAIECAEKLTEIAG--GELNRVLFAPGGTSAIGMALKLARHITGNFKVVS 161 (459)
T ss_pred CHHHHHHHHHHHHhCC-----CccCccCCHHHHHHHHHHHHhCC--CCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 7889999998887631 11111123455566666654422 1236899999999999999986531 12345555
Q ss_pred c----cCcee-----c-----CCC--------------------ccc-------ChHHHHHHHHHHHHhcCCceeEEEEE
Q 041151 161 L----FHTTW-----K-----RQQ--------------------IGV-------LIINDLQQSVAQARSKGITVRAMVII 199 (463)
Q Consensus 161 p----~g~~~-----~-----~~~--------------------~~~-------d~~~~l~~~l~~~~~~~~~~~~i~l~ 199 (463)
- +|... . ... +.- ++ +.+++.++. ..++.+|++.
T Consensus 162 ~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~----~~~vAavIvE 236 (459)
T PRK06082 162 LWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYA-DYLEYVIEK----EGGIGAFIAE 236 (459)
T ss_pred EeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHH-HHHHHHHhc----CCCEEEEEEC
Confidence 3 22211 0 000 100 02 345665542 1256676665
Q ss_pred CCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC
Q 041151 200 NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC 279 (463)
Q Consensus 200 ~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~ 279 (463)
-..+..+...+.+-+++|.++|++||+++|.||++..+.-. + ..... ..+|+ ..+ |+ +++|.+ | .
T Consensus 237 Pv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRt-G----~~fa~-e~~gv--~PD---iv--~~gKgl-~-g 301 (459)
T PRK06082 237 AVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRT-G----EWFTH-QAYGI--EPD---IL--CIGKGL-G-G 301 (459)
T ss_pred CccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc-c----hhhHh-HhhCC--CCC---EE--Eecccc-c-C
Confidence 43443345677788999999999999999999999864221 1 11111 12221 221 33 389999 5 4
Q ss_pred C-ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 280 G-QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 280 G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
| +.+|.++. ++++.+.+..... .+++.+++...++.+.|+ .+++ +++.++.+++-++|.+.|+
T Consensus 302 G~~P~~av~~---~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~l~~-~~l~~~~~~~g~~l~~~L~ 366 (459)
T PRK06082 302 GLVPIAAMIT---KDKYNTAAQISLGHYTHEKSPLGCAAALATIE-----------VIEQ-EGLLEKVKADSQFMRERLL 366 (459)
T ss_pred CCCcceEEEE---cHHHHhhccCCCCCCCCCcCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHH
Confidence 6 58999884 6665543321111 356678888777777763 2221 2456667777777777776
Q ss_pred cC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C
Q 041151 358 SC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P 431 (463)
Q Consensus 358 ~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~ 431 (463)
++ |-+.-+...|- ++-+.+..+... ..........+...+.++||.+.+.. .+.+|++.. .
T Consensus 367 ~l~~~~~~i~~vrG~Gl-~~~ve~~~~~~~-----~~~~~~~~~~~~~~~~~~Gvl~~~~~-------~~~i~~~Ppl~i 433 (459)
T PRK06082 367 EMKAKYPLIGDVRGIGL-LWGVELVTDRHT-----KERAYDEAEAVLYRCLNNGLSFKVSQ-------GNVIQLSPPLII 433 (459)
T ss_pred HHHhhCCCeeeeeeccc-eeEEEEccCccc-----cCccHHHHHHHHHHHHhCCCEEEecC-------CCEEEEeCCCcc
Confidence 53 22222333443 333323211100 00000012223345668899987721 136999987 6
Q ss_pred CcCcHHHHHHHHHHHHHHHHHHh
Q 041151 432 AEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
++++++++++++.+++.++.+++
T Consensus 434 t~~eid~~~~~l~~~l~~~~~~~ 456 (459)
T PRK06082 434 TREELTQALAILEEAIAKICQDF 456 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999886654
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7e-12 Score=127.92 Aligned_cols=313 Identities=13% Similarity=0.124 Sum_probs=179.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----C-CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----G-EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~-~g 155 (463)
++.+.+++.+.+.+.. .++...-..+....+++.+.+... -..+.|++++++++++..+++.... . ++
T Consensus 67 ~p~v~~ai~~ql~~l~----~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~ 140 (445)
T PRK09221 67 RPEIVEAVARQAATLD----YAPAFQMGHPLAFELAERLAELAP--GGLDHVFFTNSGSESVDTALKIALAYHRARGQGT 140 (445)
T ss_pred CHHHHHHHHHHHHhcc----CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 6788899988887621 111110112344456666654311 1235899999999999999986431 1 12
Q ss_pred -CEEEEc----cCcee----------cCCCc---------------------cc--------ChHHHHHHHHHHHHhcCC
Q 041151 156 -DGVVLL----FHTTW----------KRQQI---------------------GV--------LIINDLQQSVAQARSKGI 191 (463)
Q Consensus 156 -d~Vlvp----~g~~~----------~~~~~---------------------~~--------d~~~~l~~~l~~~~~~~~ 191 (463)
.+|+.- +|... ....+ .. .. +.+++.+.... ..
T Consensus 141 r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~--~~ 217 (445)
T PRK09221 141 RTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELA-DDLERLVALHD--AS 217 (445)
T ss_pred CcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHH-HHHHHHHHhcC--CC
Confidence 355553 22211 00000 00 02 45666665320 12
Q ss_pred ceeEEEEECCCCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 192 TVRAMVIINPGNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
++.+|++.--....|... +.+-+++|.++|++||+++|+||++..+.-. + ..... ..+++ ..+ +.+
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt-G----~~~~~-~~~gv--~PD-----i~~ 284 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRL-G----AAFAA-ERFGV--TPD-----IIT 284 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcC-c----hhhHH-HhcCC--CCC-----EEE
Confidence 567777765455567654 5667999999999999999999999764211 1 11111 12211 111 357
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHhh--------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI--------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
+||.+ + .| +.+|.++ +++++.+.+..- .+.+++.+++...++.+.|+ .+++ +.+
T Consensus 285 ~gK~l-~-gG~~Pi~av~---~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~-----------~i~~-~~l 347 (445)
T PRK09221 285 FAKGL-T-NGAIPMGAVI---ASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLD-----------IYRE-EDL 347 (445)
T ss_pred ecccc-c-cCcccceeeE---EcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHH-----------HHHh-ccH
Confidence 89998 4 35 6788887 488888877431 12356677777777766653 2221 245
Q ss_pred HHHHHHHHHHHHHHhhcCCCc---ccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 342 LESLRRRARMMTDGFNSCRNV---VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
.++.+++-+++.+.|+++.+. .-+...| .+.-+.+..+.. +.......+...+.++||++.++.
T Consensus 348 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~G-l~~~v~~~~~~~--------~~~~~~~~~~~~~~~~Gv~~~~~~---- 414 (445)
T PRK09221 348 FERAAELAPYFEDAVHSLKGLPHVIDIRNIG-LVAGIELAPRPG--------APGARGYEAFMKCFEKGLLVRYTG---- 414 (445)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCEEEEecCc-eEEEEEEecccc--------cccchHHHHHHHHHHCCeEEeecC----
Confidence 667777777888877765222 1122223 333322321110 000111223455677899997631
Q ss_pred CCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 419 ~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
..+|++.. .+++++++++++|.+++.++
T Consensus 415 ----~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 415 ----DTIALSPPLIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred ----CEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 26999977 89999999999999998764
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=128.33 Aligned_cols=295 Identities=12% Similarity=0.049 Sum_probs=175.5
Q ss_pred CCcHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEc-CCcHHHHHHHHHHHhcCCC
Q 041151 80 VFPADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDP-ELIFLT-DGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 80 ~~p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t-~G~~~al~~~~~~l~~~~g 155 (463)
-+|+.+++++.+...... .....++ ..-+.+.|+.++++++ ++. ++|+++ +|++.+++.++..++ .+.
T Consensus 13 ~~~~~v~~a~~~~~~~~~-~~~hr~~~f~~~~~~~r~~l~~l~~------~~~~~~v~f~~gs~T~a~~~~~~~l~-~~~ 84 (361)
T TIGR01366 13 KVRLEQLQALTTTAASLF-GTSHRQAPVKNLVGRVREGLAELFS------LPDGYEVILGNGGATAFWDAATFGLI-EKK 84 (361)
T ss_pred CCCHHHHHHHHhcCcccc-ccCcCChHHHHHHHHHHHHHHHHhC------CCCCceEEEECCchhHHHHHHHHhcc-ccc
Confidence 348888888764311100 0112222 2234567888888876 443 478886 559999999999986 443
Q ss_pred CEEEEc--c-------------Ccee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 156 DGVVLL--F-------------HTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 156 d~Vlvp--~-------------g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
..+++. + +.++ + ..+..++. .+.+ ++++|.+++-+|.||...+.++
T Consensus 85 ~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~------~~~lV~~~h~et~tG~~~pi~~--- 149 (361)
T TIGR01366 85 SLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPEP------QADP------GVDVIAWAHNETSTGVAVPVRR--- 149 (361)
T ss_pred ccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCCCCC------ccCC------CCCEEEEcccCCccceeccccc---
Confidence 323322 1 1222 1 11222222 1222 7999999999999999999554
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
| ++++|+++++|.+.+... .+..+.. -.+++.|..|++ |.+|. ++.+++ +++++
T Consensus 150 I---~~~~g~~~iVDavqs~g~-----~~idv~~-------------~D~~~~s~~K~l-g~~~G-l~~~~~---s~~~~ 203 (361)
T TIGR01366 150 P---EGSDDALVVIDATSGAGG-----LPVDIAE-------------TDVYYFAPQKNF-ASDGG-LWLAIM---SPAAL 203 (361)
T ss_pred c---cccCCCeEEEEcCccccC-----CCCCHHH-------------CCEEEEEchhhc-CCCCc-eEEEEE---CHHHH
Confidence 3 478999999999988632 2233332 136889999999 66642 555553 77777
Q ss_pred HHHHhhhh----------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHH
Q 041151 297 DEIYKIAS----------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMM 352 (463)
Q Consensus 297 ~~l~~~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l 352 (463)
+++..... ...+++...-.++.++++ ...++ .+.+.+++++..+++
T Consensus 204 ~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~----------~l~~~gg~e~~~~r~~~l~~~l 273 (361)
T TIGR01366 204 ERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQID----------WMNGNGGLDWAVARTADSSSRL 273 (361)
T ss_pred hhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHH
Confidence 66652210 011222222223344432 12222 455667888889999
Q ss_pred HHHhhcCCCcccccC-C---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 353 TDGFNSCRNVVCNFT-E---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 353 ~~~L~~~pg~~~~~~-~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
++.|.+.++++.... . ...... +.++.++ +..+ +...|+++||.+.++... . +...+|+|
T Consensus 274 ~~~l~~~~~~~~~~~~~~~~s~~v~~--v~~~~g~----------~~~~-v~~~L~~~gI~i~~~~~~--l-~~~~vRis 337 (361)
T TIGR01366 274 YSWAQERPYATPFVTDPGKRSQVVGT--IDFVDDI----------DAAT-VAKILRANGIVDTEPYRK--L-GRNQLRVA 337 (361)
T ss_pred HHHHHhCCCcccCCCChhhcccceEE--EECCCcc----------CHHH-HHHHHHHCCCeeccCccc--c-CCCcEEEE
Confidence 999998855554421 1 111122 2233321 2334 445567889999776422 1 23479999
Q ss_pred ec--CCcCcHHHHHHHHHHHHHH
Q 041151 429 IL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
+. ++.+|++++++.|++++++
T Consensus 338 ~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 338 MFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhh
Confidence 99 8999999999999998765
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.5e-12 Score=127.15 Aligned_cols=314 Identities=14% Similarity=0.080 Sum_probs=184.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-----c-CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-----R-GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----~-~~g 155 (463)
++.+.+++.+++.+..... .+ .. ..+.+.++|+.+.+..+ ..-+.+++++++++|+..+++... + .+|
T Consensus 72 ~p~v~~Ai~~ql~~~~~~~-~~--~~-~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGseAve~AlKlA~~~~~~rg~~~ 145 (453)
T PRK06943 72 NPRINAALKDQLDTLEHAM-LA--GC-THEPAIELAERLAALTG--GTLGHAFFASDGASAVEIALKMSFHAWRNRGRGD 145 (453)
T ss_pred CHHHHHHHHHHHHhcCCcc-cc--cc-CCHHHHHHHHHHHHhCC--CCCCEEEEeCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 7889999988887631111 11 11 12455566666654322 112589999999999999999752 0 123
Q ss_pred -CEEEEc----cCcee-------------------------c-CCCc----c--------cChHHHHHHHHHHHHhcCCc
Q 041151 156 -DGVVLL----FHTTW-------------------------K-RQQI----G--------VLIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 156 -d~Vlvp----~g~~~-------------------------~-~~~~----~--------~d~~~~l~~~l~~~~~~~~~ 192 (463)
.+|+.- +|... + .+.. . -++ +.+++.+... +.+
T Consensus 146 r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~---~~~ 221 (453)
T PRK06943 146 KREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARAL-ADVRRLFAER---AGK 221 (453)
T ss_pred CCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHH-HHHHHHHHhC---CCc
Confidence 455554 33221 0 0000 0 123 5566666531 236
Q ss_pred eeEEEEEC-CCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIIN-PGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~-p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+.+|++.- ...-.|. ..+.+-+++|.++|++||+++|.||++..+.-. + .+... ..+|+ ..+ | -+
T Consensus 222 iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRt-G----~~fa~-~~~gv--~PD---i--vt 288 (453)
T PRK06943 222 IAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRT-G----TFFAC-EQAGV--WPD---F--LC 288 (453)
T ss_pred eEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCC-c----chhHH-HhCCC--CCC---e--Ee
Confidence 78877774 2444565 467788999999999999999999999875221 1 11111 12221 221 2 34
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHhh-------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI-------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (463)
++|.+ + .| +.+|.++ +++++.+.+..- ...+++.+++...++.+.|+ .+++ +++.
T Consensus 289 ~gKgl-~-gG~~Pi~av~---~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~i~~-~~l~ 351 (453)
T PRK06943 289 LSKGI-S-GGYLPLSLVL---SRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLD-----------LFAE-DDVL 351 (453)
T ss_pred eehhh-c-cCcccceEEE---EcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHH-----------HHHh-cCHH
Confidence 69999 5 58 5899998 488888877531 22466778888888887764 2221 2344
Q ss_pred HHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC
Q 041151 343 ESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK 419 (463)
Q Consensus 343 ~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~ 419 (463)
++.+++-++|.+.|+++ |++.-+...|- +.-+.+..+... .......+...+.++||++.+.
T Consensus 352 ~~~~~~G~~l~~~L~~l~~~~~v~~vrG~Gl-~~gvel~~~~~~--------~~~~~~~i~~~~~~~Gll~~~~------ 416 (453)
T PRK06943 352 ARNARKSARLRAALAPLAAHPQVRHLRQRGT-IFAFDVALDGDA--------ARTFSRRFFEAALERELLLRPI------ 416 (453)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEeEecccc-EEEEEEccCCCc--------chHHHHHHHHHHHHCCcEEEec------
Confidence 55555556666666543 44443333443 333223211000 0001222345567889999763
Q ss_pred CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 420 EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 420 ~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+ +.+|++.. .+++++++++++|.++++++..
T Consensus 417 -g-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~ 449 (453)
T PRK06943 417 -G-TTVYLMPPYVLDDDEIAWLAERTRATLDATLA 449 (453)
T ss_pred -C-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 25899955 8999999999999999988743
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-12 Score=128.18 Aligned_cols=306 Identities=13% Similarity=0.080 Sum_probs=176.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+++.+.......+... +....+++.+.+..+ -.-+.|++++++++++..+++.... .+|
T Consensus 63 ~p~v~~ai~~~~~~~~~~~~~~~~~----~~~~~la~~l~~~~~--~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~ 136 (427)
T TIGR00508 63 HPRLNAAAQKQIDKMSHVMFGGFTH----KPAIELCQKLVKMTP--NALDCVFLADSGSVAVEVALKMALQYWQAKGEKN 136 (427)
T ss_pred CHHHHHHHHHHHHhcCCccccccCC----HHHHHHHHHHHhhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCC
Confidence 6789999988887631111111111 223344554443211 1226899999999999999886431 123
Q ss_pred -CEEEEc----cCcee----------------------------cCCCcc-----cChHHHHHHHHHHHHhcCCceeEEE
Q 041151 156 -DGVVLL----FHTTW----------------------------KRQQIG-----VLIINDLQQSVAQARSKGITVRAMV 197 (463)
Q Consensus 156 -d~Vlvp----~g~~~----------------------------~~~~~~-----~d~~~~l~~~l~~~~~~~~~~~~i~ 197 (463)
..|+.- +|... +...+. -|+ +++++.+... +.++.+|+
T Consensus 137 r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~l~~~l~~~---~~~vaavi 212 (427)
T TIGR00508 137 RQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAI-TPLAKLMELH---SDEIAAVI 212 (427)
T ss_pred ccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHH-HHHHHHHHhc---CCcEEEEE
Confidence 345553 22111 000010 134 6666666532 12566666
Q ss_pred EECC-CCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCccc
Q 041151 198 IINP-GNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275 (463)
Q Consensus 198 l~~p-~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 275 (463)
+..- .+-.|. ..+.+.+++|.++|++|++++|+||++..+... +... ... .+++ .. .|+ ++||.+
T Consensus 213 vEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~-G~~~-~~~----~~~v--~p---Di~--~~gK~l 279 (427)
T TIGR00508 213 LEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRT-GKLF-ACE----HAGV--VP---DIL--CVGKAL 279 (427)
T ss_pred EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-Cccc-hhh----hcCC--CC---CEE--Eechhh
Confidence 6532 443454 557899999999999999999999999664321 1111 111 1111 12 133 379999
Q ss_pred CCCCCc-eeEEEEecCCChhHHHHHHhh------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 041151 276 WGECGQ-RGGYFEMTNIPPKTVDEIYKI------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRR 348 (463)
Q Consensus 276 ~g~~G~-R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (463)
+ .|+ .++.++ .++++.+.+... ...++..+++...++.+.|+ .++. ....++.+++
T Consensus 280 -~-gG~~p~~a~~---~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~-----------~l~~-~~~~~~~~~~ 342 (427)
T TIGR00508 280 -T-GGYMTLSATV---TTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLA-----------ILLE-GEWQKQVSAI 342 (427)
T ss_pred -h-cCcccceEEE---EcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHH
Confidence 4 575 577777 488888888642 22345567777777777763 2221 2345667777
Q ss_pred HHHHHHHhhcCC---CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEE
Q 041151 349 ARMMTDGFNSCR---NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHL 425 (463)
Q Consensus 349 ~~~l~~~L~~~p---g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~l 425 (463)
.++|.+.|+++. .+.-....| .+.-+.+..+. .... +...|.++||.+.+.. ..+
T Consensus 343 ~~~l~~~L~~l~~~~~i~~vrg~G-~~~~i~~~~~~------------~~~~-~~~~l~~~Gv~~~~~~--------~~l 400 (427)
T TIGR00508 343 ENQLKRELSPLRKNPVVKDVRVLG-AIGVVEMYKPV------------NVEE-LQKKFVEQGVWIRPFG--------KLI 400 (427)
T ss_pred HHHHHHHHHHhhcCCCEEeEeccc-cEEEEEECCcc------------CHHH-HHHHHHHCCeEEEecC--------CEE
Confidence 777888777652 111111223 33332232111 1233 4455777899997631 258
Q ss_pred EEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 426 RTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 426 Ris~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
|++.. .+++||+++++++.+++++
T Consensus 401 ~~~ppl~~t~~~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 401 YVMPPYIITTEQLQKLTAALIEALHE 426 (427)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhc
Confidence 99888 8999999999999998854
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-11 Score=125.24 Aligned_cols=326 Identities=11% Similarity=0.108 Sum_probs=185.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+++... .+.+..... .+.+.++|+.+.+... -.-+.+++++++++|+..+++.... .+|
T Consensus 49 hp~v~~Ai~~ql~~~---~~~~~~~~~-~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~ 122 (447)
T PRK06917 49 VKEIADAIKEQAEEV---SFVYRSQFT-SEPAEKLAKKLSDLSP--GDLNWSFFVNSGSEANETAMKIAIQHFQERGIQG 122 (447)
T ss_pred CHHHHHHHHHHHhhC---cCccccccC-CHHHHHHHHHHHHhCC--CCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 788999998888762 111111111 3455566666654321 1225789999999999999997620 133
Q ss_pred -CEEEEc----cCcee---------------------------cC-CCc--cc--------ChHHHHHHHHHHHHhcCCc
Q 041151 156 -DGVVLL----FHTTW---------------------------KR-QQI--GV--------LIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 156 -d~Vlvp----~g~~~---------------------------~~-~~~--~~--------d~~~~l~~~l~~~~~~~~~ 192 (463)
.+|+.- +|... +. ... +- +. +.+++.++... ..+
T Consensus 123 r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~le~~i~~~~--~~~ 199 (447)
T PRK06917 123 KHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACA-TELETAIERIG--AEH 199 (447)
T ss_pred CCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHH-HHHHHHHHhcC--CCc
Confidence 455553 22211 00 000 00 12 45555555321 125
Q ss_pred eeEEEEEC-CCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIIN-PGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~-p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+.+|++.- +.|--|. ..+.+-+++|.++|++||+++|.||++..+.-. + ..... ..+++ ..+ | .+
T Consensus 200 iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRt-G----~~~a~-~~~gv--~PD---i--~~ 266 (447)
T PRK06917 200 IAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRT-G----AMFAM-EHWGV--EPD---I--MT 266 (447)
T ss_pred eEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcc-c----chhhH-HhcCC--CCC---E--EE
Confidence 77777763 3333344 456888999999999999999999999864211 1 11111 12211 221 2 56
Q ss_pred CCcccCCCCCc-eeEEEEecCCChhHHHHHHhh-----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 271 VSKGYWGECGQ-RGGYFEMTNIPPKTVDEIYKI-----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 271 ~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
++|.+ + .|. .+|.++ +++++.+.+... ...+++.+++...++.+.|+ .+. .+.+.++
T Consensus 267 ~gK~l-~-~G~~Pi~a~~---~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~-----------~l~-~~~l~~~ 329 (447)
T PRK06917 267 LGKGL-G-AGYTPIAATV---VSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLE-----------YME-KHNLPEK 329 (447)
T ss_pred eeehh-c-cCCcceEEEE---EcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHH-----------HHH-HCCHHHH
Confidence 79999 4 575 889998 488888877532 12356778888888777763 222 1235556
Q ss_pred HHHHHHHHHHHhhcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCCCC
Q 041151 345 LRRRARMMTDGFNSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 345 ~~~~~~~l~~~L~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
.+++-+.|.+.|+++ |-+.-+...|- ++.+.+.-+... .....+ -...+...+.++||++.+...-.
T Consensus 330 ~~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl-~~~ie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~ 403 (447)
T PRK06917 330 AAEKGEYLIKGLQKVQQQSTIIGDVRGKGL-LIGVEFVADKKT-----KQPFSKSQAVASELISVAAKNGLLLYPAVAGQ 403 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecce-EEEEEEeccCCc-----CCCCcchhHHHHHHHHHHHhCCcEEEeccccc
Confidence 666666777766653 22222233343 333333111000 000000 12233455677899998742110
Q ss_pred CCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 418 ~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.....+.+|++.. .+++|+++++++|.++++++.+
T Consensus 404 ~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 404 DGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred CCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 0011247999988 8999999999999999988744
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.49 E-value=5e-13 Score=117.84 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCcee---c-CCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHTTW---K-RQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~~~---~-~~~ 170 (463)
+.++++.++++++ .+++++++++|+++++..++.++. +++++|+++ .|.++ + ...
T Consensus 2 ~~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 74 (170)
T cd01494 2 LEELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALL-GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDA 74 (170)
T ss_pred HHHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhC-CCCCEEEEeecccceehhhHHHhcCCEEEEeccCCC
Confidence 3578889998874 567899999999999999999997 789999996 23333 2 112
Q ss_pred cccCh-HHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 171 IGVLI-INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 171 ~~~d~-~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
...+. ++.+++.... .+++++++++++||+|...+. ++|.++|+++++++|+|++|..+.... .. ...
T Consensus 75 ~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~-~~-~~~- 143 (170)
T cd01494 75 GYGGLDVAILEELKAK-----PNVALIVITPNTTSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPA-PG-VLI- 143 (170)
T ss_pred Cccchhhhhhhhcccc-----CceEEEEEecCcCCCCeEcCH---HHHHHHHHHcCCEEEEecccccccccc-cc-ccc-
Confidence 11221 0244443322 278999999999999999884 777778889999999999999875521 11 011
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
...+..+++.|++|.+ +. .++|++++
T Consensus 144 ----------~~~~~d~~~~s~~K~~-~~--~~~G~l~~ 169 (170)
T cd01494 144 ----------PEGGADVVTFSLHKNL-GG--EGGGVVIV 169 (170)
T ss_pred ----------ccccCCEEEEEccccc-CC--CceEEEEe
Confidence 1122458889999998 53 67999974
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-11 Score=124.99 Aligned_cols=323 Identities=11% Similarity=0.072 Sum_probs=181.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+.+.... .++.... .+...++|+.+.+..+ ..+.+++++++++|+..+++.... .+|
T Consensus 65 ~p~v~~ai~~q~~~~~----~~~~~~~-~~~~~~lae~l~~~~~---~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~ 136 (451)
T PRK07678 65 RKELAEAAYEQLKTLS----YFPLTQS-HEPAIKLAEKLNEWLG---GEYVIFFSNSGSEANETAFKIARQYHAQKGEPH 136 (451)
T ss_pred CHHHHHHHHHHHHhcC----ccccccC-CHHHHHHHHHHHHhCC---CCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 6788899988887631 1111112 2334456666554322 124899999999999999986531 123
Q ss_pred -CEEEEc----cCcee-------------------------c-CCCcc---------cCh--HHHHHHHHHHHHhcCCce
Q 041151 156 -DGVVLL----FHTTW-------------------------K-RQQIG---------VLI--INDLQQSVAQARSKGITV 193 (463)
Q Consensus 156 -d~Vlvp----~g~~~-------------------------~-~~~~~---------~d~--~~~l~~~l~~~~~~~~~~ 193 (463)
.+|+.- +|... + .+.+. .|. ++.+++.+... .+.++
T Consensus 137 r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~i 214 (451)
T PRK07678 137 RYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWE--LSETI 214 (451)
T ss_pred CcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhc--CCCce
Confidence 345543 22111 0 00000 011 02245555421 11267
Q ss_pred eEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 194 RAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 194 ~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
-+|++.-...-.|.+ .+.+-++++.++|++||+++|.||++..+.-.+ .+... ..+|+ ..+ | -+++
T Consensus 215 AAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG-----~~~~~-~~~gv--~PD---i--vt~g 281 (451)
T PRK07678 215 AAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTG-----KAFGF-MNYGV--KPD---I--ITMA 281 (451)
T ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCc-----hhHHH-HhcCC--CCC---E--EEee
Confidence 787776333334655 567789999999999999999999997752211 11111 12222 221 2 3689
Q ss_pred cccCCCCC-ceeEEEEecCCChhHHHHHHhh-------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 273 KGYWGECG-QRGGYFEMTNIPPKTVDEIYKI-------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 273 K~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
|.+ | .| +.+|.++ +++++.+.+..- ...+++.+++...++.+.|+ .+++ +.+.++
T Consensus 282 K~l-g-gG~~Pi~av~---~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~-----------~l~~-~~~~~~ 344 (451)
T PRK07678 282 KGI-T-SAYLPLSATA---VKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLE-----------IMEN-ENLIER 344 (451)
T ss_pred ccc-c-cCCcceeEEE---EcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHH
Confidence 999 4 46 6899998 488888887531 23467788888888887764 2221 234555
Q ss_pred HHHHHHHHHHHhhc----CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC
Q 041151 345 LRRRARMMTDGFNS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420 (463)
Q Consensus 345 ~~~~~~~l~~~L~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~ 420 (463)
.++.-++|.+.|++ .|-+.-+...|.++ -+.+.-+... ...........+...+.++||++.+.... .+.
T Consensus 345 ~~~~g~~l~~~l~~~~~~~~~v~~vrg~Gl~~-~i~~~~~~~~----~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~-v~~ 418 (451)
T PRK07678 345 SAQLGELLLEQLKEELGEHPLVGDIRGKGLLV-GIELVNDKET----KEPADNDKVASVVAACKEKGLIIGKNGDT-VAG 418 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEeeceEE-EEEEecCCcc----cCcCchHHHHHHHHHHHHCCcEEeecCcc-ccC
Confidence 56665666666643 33222233344333 2222111000 00000001223445567789999763211 111
Q ss_pred CCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 421 GIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 421 ~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+...+|++.. .+++||++++++|.++++++
T Consensus 419 ~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 419 YNNVLTLSPPLVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CCCEEEEECCCcCCHHHHHHHHHHHHHHHHhc
Confidence 2347999988 69999999999999998764
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-11 Score=125.54 Aligned_cols=322 Identities=11% Similarity=-0.026 Sum_probs=178.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+.+.+.......|.. .+...++++.+.+..+ ...+.+++++++++|+..+++....-.| ..|+.
T Consensus 71 ~p~i~~Ai~~ql~~~~~~~~~~~~----~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~ 144 (457)
T PRK05639 71 HPKLVKAVQEQVALIQHSMIGYTH----SERAIRVAEKLAEISP--IENPKVLFGLSGSDAVDMAIKVSKFSTRRPWILA 144 (457)
T ss_pred CHHHHHHHHHHHHhccccccCccC----CHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 678999998888762111112221 2344456666544321 1225899999999999999987531123 44554
Q ss_pred c----cCcee--------------------------cC-CC----cc----cChHH--------HHHHHHHHHHhcCCce
Q 041151 161 L----FHTTW--------------------------KR-QQ----IG----VLIIN--------DLQQSVAQARSKGITV 193 (463)
Q Consensus 161 p----~g~~~--------------------------~~-~~----~~----~d~~~--------~l~~~l~~~~~~~~~~ 193 (463)
- +|... +. +. +. -|. + .+++.+........++
T Consensus 145 ~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~le~~l~~~~~~~~~i 223 (457)
T PRK05639 145 FIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEP-DELINRFLDYLENYVFSHVVPPDEV 223 (457)
T ss_pred ECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCH-HHHHHHHHHHHHHHHHHhhcCCCce
Confidence 3 22111 00 00 00 012 2 2333332110012367
Q ss_pred eEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 194 RAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 194 ~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
.+|++.--..-.|. ..+.+-+++|.++|++||+++|.||++..+.-. ...... ..+++ .. .|++ ++
T Consensus 224 AAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~Grt-----G~~~a~-~~~gv--~P---Div~--~g 290 (457)
T PRK05639 224 AALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRT-----GKWFAS-EWFEV--KP---DLII--FG 290 (457)
T ss_pred EEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcC-----chHHHH-HhcCC--CC---CEEE--ec
Confidence 88777643444566 456778999999999999999999999864221 111111 12221 12 2333 89
Q ss_pred cccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 041151 273 KGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMM 352 (463)
Q Consensus 273 K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (463)
|.+ + .|+.+|.++ +++++.+........+++.+++...++.+.|+ .++ .+.+.++.+++-++|
T Consensus 291 K~l-~-gG~pi~av~---~~~~i~~~~~~~~~~T~~g~p~~~aaa~a~l~-----------~l~-~~~l~~~~~~~g~~l 353 (457)
T PRK05639 291 KGV-A-SGMGLSGVI---GRKELMDLTSGSALLTPAANPVISAAAEATLE-----------IIE-EENLLKNALKVGEFI 353 (457)
T ss_pred hhh-c-CCCcceeEE---ehHHHHhhcCCCcccCCCcCHHHHHHHHHHHH-----------HHH-HccHHHHHHHHHHHH
Confidence 999 4 588899998 58888773211111355667777666666653 222 123445555566667
Q ss_pred HHHhhcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 353 TDGFNSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 353 ~~~L~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
.+.|+++ |-+.-+...| .++-+.+..+... ........+...+.++||++.+.. . +.+.+|++
T Consensus 354 ~~~L~~l~~~~~~~~~VrG~G-l~~gve~~~~~~~-------~~~~~~~~~~~~~~~~Gv~~~~~g---~--~~~~lr~~ 420 (457)
T PRK05639 354 KKRLLEMKESFEVIGDVRGKG-LMIGVEIVKENGK-------PDPELTGKICWRAFELGLILPSYG---M--FGNVIRIT 420 (457)
T ss_pred HHHHHHHHHhCCCEEeeccce-eEEEEEEecCCCC-------CCHHHHHHHHHHHHhCCeEEeecC---C--CCCEEEEe
Confidence 7766653 2122223334 3333222211100 000012233455667899997642 1 22479999
Q ss_pred ec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 429 IL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
.. .+++|+++++++|.+++++..+.
T Consensus 421 Ppl~it~~~id~~~~~l~~~l~~~~~~ 447 (457)
T PRK05639 421 PPLVITKEIAEKGLEIMERAIKDALAG 447 (457)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99 89999999999999999887543
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-11 Score=125.66 Aligned_cols=318 Identities=14% Similarity=0.108 Sum_probs=183.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----C-CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----G-EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~-~g 155 (463)
++.+.+++.+++.+.......|. . ..+.+..+|+.+.+.. +-..+.+++++++++|+..+++.... + ++
T Consensus 64 ~p~i~~Ai~~q~~~~~~~~~~~~--~-~~~~~~~lae~L~~~~--p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~ 138 (459)
T PRK05965 64 QESIVEAAAEQMRELPYATGYFH--F-GSEPAIRLAAKLAERA--PGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPS 138 (459)
T ss_pred CHHHHHHHHHHHHhcCCcccccc--c-CCHHHHHHHHHHHhhC--CCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCC
Confidence 77899999988876211111111 1 1244445666665431 11335899999999999999986420 1 23
Q ss_pred -CEEEEc----cCcee----------------c--C------CCc------ccC--------hHHHHHHHHHHHHhcCCc
Q 041151 156 -DGVVLL----FHTTW----------------K--R------QQI------GVL--------IINDLQQSVAQARSKGIT 192 (463)
Q Consensus 156 -d~Vlvp----~g~~~----------------~--~------~~~------~~d--------~~~~l~~~l~~~~~~~~~ 192 (463)
.+|+.- +|... + . ..+ .-| + +.+++.+.... ..+
T Consensus 139 r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~--~~~ 215 (459)
T PRK05965 139 KKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASV-AALRAKVAELG--ADN 215 (459)
T ss_pred ccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHH-HHHHHHHHhcC--CCc
Confidence 345543 22211 0 0 000 012 2 35566665321 126
Q ss_pred eeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC
Q 041151 193 VRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV 271 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 271 (463)
+.+|++.-.....|. ..+.+-+++|.++|++||+++|.||+...+.-.+ .+... ..+|+ ..+ | -++
T Consensus 216 iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG-----~~~a~-~~~gv--~PD---i--v~~ 282 (459)
T PRK05965 216 VAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTG-----PLFAC-EAEGV--VPD---L--MTV 282 (459)
T ss_pred eEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCc-----hhhhH-hhcCC--CCC---e--EEe
Confidence 788777744444565 4577789999999999999999999998752211 11111 12221 121 2 457
Q ss_pred CcccCCCCC-ceeEEEEecCCChhHHHHHHh-------h-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 041151 272 SKGYWGECG-QRGGYFEMTNIPPKTVDEIYK-------I-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342 (463)
Q Consensus 272 SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (463)
+|.+ + .| +.+|.++ +++++.+.+.. . ...+++.++++..++.+.|+ .++ .+++.
T Consensus 283 gKgl-~-gG~~Pi~av~---~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~-----------~l~-~~~l~ 345 (459)
T PRK05965 283 AKGL-T-SGYVPMGAVL---MSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLR-----------LYH-EGGLL 345 (459)
T ss_pred chhh-c-cCCcceeEEE---EcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHH-----------HHH-hccHH
Confidence 9999 4 58 4899999 48888887753 1 22467788888888877763 222 22355
Q ss_pred HHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCCC
Q 041151 343 ESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 343 ~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f 416 (463)
++.++.-++|.+.|+++ |.+.-+...| +++-+.+..... ....... -...+...+.++||++.+.
T Consensus 346 ~~~~~~g~~l~~~l~~l~~~~~v~~vrG~G-l~~gie~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~Gll~~~~--- 416 (459)
T PRK05965 346 ANGQKAGPRFAAGLDALRAHPLVGDVRGRG-LLGALELVADKA-----TKTPFDAALDPADRIFDRAYANGLVFRAF--- 416 (459)
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEEeecc-eEEEEEEecccc-----ccCCCCchhHHHHHHHHHHHhCCeEEEec---
Confidence 55666666777777654 2222223333 333322221100 0000000 1223445567889999762
Q ss_pred CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 417 ~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+.+.+|+... .+++++++++++|.++++++
T Consensus 417 ----g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 417 ----GDGVLGFAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred ----CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 2246899977 89999999999999999876
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-11 Score=125.70 Aligned_cols=321 Identities=11% Similarity=-0.024 Sum_probs=184.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+++.+.. ..+.+. .-..+.+..+|+.+.+... -.-+.+++++++++|+..+++.... .++
T Consensus 68 ~p~v~~Av~~q~~~~~-~~~~~~--~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~ 142 (461)
T PRK07482 68 RTEVAEAIAEQAKELA-YYHTYV--GHGTEASITLSKRIIDRAP--AGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPE 142 (461)
T ss_pred CHHHHHHHHHHHHhcC-cccccc--ccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 7889999998887621 011110 1123556667777654321 1236899999999999999997620 122
Q ss_pred -CEEEEc----cCcee-------------------------cCCC-cc-------------cChHHHHHHHHHHHHhcCC
Q 041151 156 -DGVVLL----FHTTW-------------------------KRQQ-IG-------------VLIINDLQQSVAQARSKGI 191 (463)
Q Consensus 156 -d~Vlvp----~g~~~-------------------------~~~~-~~-------------~d~~~~l~~~l~~~~~~~~ 191 (463)
.+|+.- +|... +... +. .++ +.+++.+... ...
T Consensus 143 r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~--~~~ 219 (461)
T PRK07482 143 KKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCA-DELEELILAE--GPD 219 (461)
T ss_pred CceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHH-HHHHHHHHhc--CCC
Confidence 345553 33211 0000 00 034 6667766421 112
Q ss_pred ceeEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 192 TVRAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
++.+|++.-...-.|.+ .+.+-+++|.++|++||+++|.||++..+.-.+ ..... ..+|+ .. .| -+
T Consensus 220 ~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG-----~~~a~-~~~gv--~P---Di--v~ 286 (461)
T PRK07482 220 TIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLG-----SMFGS-DHYGI--EP---DL--IT 286 (461)
T ss_pred cEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc-----chhhH-HhcCC--CC---CE--EE
Confidence 57777776333334665 567789999999999999999999998752211 11111 12221 22 12 34
Q ss_pred CCcccCCCCCc-eeEEEEecCCChhHHHHHHhh--------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 271 VSKGYWGECGQ-RGGYFEMTNIPPKTVDEIYKI--------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 271 ~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
++|.+ + .|. .+|.++ +.+++.+.+... ...+++.++++..++.+.|+ .++ .+++
T Consensus 287 ~gKgl-~-gG~~Pi~av~---~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~-----------~~~-~~~l 349 (461)
T PRK07482 287 VAKGL-T-SAYAPLSGSI---VGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLD-----------ILE-RENL 349 (461)
T ss_pred Ecccc-c-cCccccceee---ecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHH-----------HHH-hCCH
Confidence 79998 4 574 788888 478887777521 22467788888888888763 222 1234
Q ss_pred HHHHHHHHHHHHHHhhc----CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh---HHHHHHHHHhcCeEeeCCC
Q 041151 342 LESLRRRARMMTDGFNS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD---VFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~gI~v~pg~ 414 (463)
.++.++.-++|.+.|++ .|-+.-+...| .+.-+.+..... +......+ ...+...+.++||++.++.
T Consensus 350 ~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~G-lm~giel~~~~~-----~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~ 423 (461)
T PRK07482 350 VGNAAEVGAYFRARLRAAFGDHPLVGEVRGVG-MLAAVEFVADRD-----DRTPFDPALKIGPQVSAAALERGVIARAMP 423 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEeece-eEEEEEeccCCC-----cCCCCChhhHHHHHHHHHHHHCCcEEecCC
Confidence 55556666666666654 33222233334 333332321100 00000001 1233455667899986522
Q ss_pred CCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+.+.+|+..+ .+++|+++++++|.++++++.+
T Consensus 424 ------~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~~~ 457 (461)
T PRK07482 424 ------HGDILGFAPPLVLTRAEADEIVAIAKDAVDEVLG 457 (461)
T ss_pred ------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1136899866 8999999999999999987643
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.4e-12 Score=126.63 Aligned_cols=315 Identities=12% Similarity=0.044 Sum_probs=179.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+++... . .+.. ..+.+.++++.+.+..+ ...+.+.+++++++|+..+++....-.| .+|+.
T Consensus 71 ~p~v~~ai~~q~~~~--~--~~~~---~~~~~~~la~~L~~~~~--~~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~ 141 (433)
T PRK00615 71 HPKICDAIQQGAERG--T--SYGL---TSEQEILFAEELFSYLG--LEDHKIRFVSSGTEATMTAVRLARGITGRSIIIK 141 (433)
T ss_pred CHHHHHHHHHHHHhC--C--CCCC---CCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHhhCCCEEEE
Confidence 678999998888762 1 2211 12345556666654322 1225899999999999999986531234 34544
Q ss_pred c----cCce---e-----c--C-----CCc------------c-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTT---W-----K--R-----QQI------------G-VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~---~-----~--~-----~~~------------~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
- +|.. . . . ..+ . -|. +.+++.+... +.++.+|++.....-.|.+
T Consensus 142 ~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~aavI~Epv~~~~G~~ 217 (433)
T PRK00615 142 FLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDF-QIFQTVMNSL---GHRVAGVIFEPICANMGVV 217 (433)
T ss_pred EcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCH-HHHHHHHHhc---CCceEEEEECCCCCCCCcc
Confidence 3 4422 1 0 0 000 0 156 8888888642 1245666555444445765
Q ss_pred C-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 L-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 ~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
. +.+-+++|.++|++||+++|.||++..+.. + . .. ....+++ .. .| .+++|.+ | .|+.+|+++
T Consensus 218 ~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~-G-~---~g--a~~~~gv--~P---Di--~~~gK~l-g-gG~p~~av~ 281 (433)
T PRK00615 218 LPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRV-A-Q---GG--AAAIYHV--KP---DI--TVYGKIL-G-GGLPAAAVV 281 (433)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEcccccccc-c-H---hH--HHHhcCC--CC---Ce--EEEcccc-c-CCcceeeee
Confidence 5 466799999999999999999999976522 1 1 11 1122221 12 13 3589999 4 578899998
Q ss_pred ecCCChhHHHHHHhhh----hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---C
Q 041151 288 MTNIPPKTVDEIYKIA----SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---R 360 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---p 360 (463)
+++++.+.+.... ..+++.+++...++.+.|+ .+++ +..++++.++-+++.+.|++. .
T Consensus 282 ---~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~-----------~i~~-~~~~~~~~~~g~~l~~~l~~~~~~~ 346 (433)
T PRK00615 282 ---AHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASIN-----------LCRE-QGFYTQLSTLEQNFLSPIEEMIRSQ 346 (433)
T ss_pred ---ecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHH-----------HHhc-ccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5888988885321 1345567777777777663 2221 234555555655665555432 1
Q ss_pred Cc--ccccCCceeEEeeeccC-Ch-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcH
Q 041151 361 NV--VCNFTEGAMYSFPQIRL-PP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436 (463)
Q Consensus 361 g~--~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i 436 (463)
|+ .... . |.++.+.+.- +. .+.+.. .............|.++||++.|.. ++. .=+|..++++||
T Consensus 347 g~~v~~~r-~-G~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~------~~ls~~ht~~di 415 (433)
T PRK00615 347 GFPVSLVR-Y-GSMFSFFFNENRPNNLAEAQ--LSDIEAFQTFYQSAFSKGVYLSPSP-FEA------SFLSSAHSMENL 415 (433)
T ss_pred CCCeEEEe-e-ceEEEEEEeCCCCCChHHHh--hCCHHHHHHHHHHHHHCCeeecCcc-ccc------cceecCCCHHHH
Confidence 33 2233 3 3333333321 10 010000 0000012234455667899998744 111 135667899999
Q ss_pred HHHHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDEFM 451 (463)
Q Consensus 437 ~~~~~~l~~~l~~~~ 451 (463)
+++++++.+++++..
T Consensus 416 d~~~~a~~~~~~~~~ 430 (433)
T PRK00615 416 DYAQNVLIDSLEKVF 430 (433)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-10 Score=118.10 Aligned_cols=314 Identities=10% Similarity=0.042 Sum_probs=180.4
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCC-----CCcEEEcCCcHHHHHHHHHHHh----cC------CCCEEEEc----
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSD-----PELIFLTDGASKGVMQTLNCVI----RG------EGDGVVLL---- 161 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~----~~------~gd~Vlvp---- 161 (463)
..|.......++.+.+-+|+.+..|.+-. ...-++|+|+++++..++.+-- +. +.-.|+++
T Consensus 112 ~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH 191 (490)
T PLN02880 112 FSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTH 191 (490)
T ss_pred cccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCch
Confidence 33433345689999999999998887632 1245678888888777665431 01 11234444
Q ss_pred ---------cCc-----ee-cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 162 ---------FHT-----TW-KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 162 ---------~g~-----~~-~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
.|. +. +. .++.+|+ +.|++++++..++|..+-+|+.+...-+||.+-+ +++|+++|++
T Consensus 192 ~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~-~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp---l~eI~~i~~~ 267 (490)
T PLN02880 192 SALQKACQIAGIHPENCRLLKTDSSTNYALAP-ELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP---LLELGKIAKS 267 (490)
T ss_pred HHHHHHHHHcCCCHHHEEEeecCCCcCCcCCH-HHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc---HHHHHHHHHH
Confidence 443 12 22 3578999 9999999987666655666777788889999976 7888889999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh-HHHHHHhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK-TVDEIYKI 302 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~-~~~~l~~~ 302 (463)
||+|+.+|-+|+.+... . ........++ .. -.-+..+++|+++ ...-+|++++. ++. +++.+..-
T Consensus 268 ~~iwlHVDaA~gg~~~~-~---~~~~~~l~gi----e~--aDSit~d~HKwl~--~P~~~g~llvr--~~~~l~~~~~~~ 333 (490)
T PLN02880 268 NGMWFHVDAAYAGSACI-C---PEYRHYIDGV----EE--ADSFNMNAHKWFL--TNFDCSLLWVK--DRNALIQSLSTN 333 (490)
T ss_pred cCCEEEEehhhHHHHHh-C---HHHHHHhcCc----hh--cCEEEECchhhcC--CCccEEEEEEe--CHHHHHHHHccC
Confidence 99999999999876431 1 1122222221 11 1246789999874 56668999873 332 23333211
Q ss_pred hhh--c-------------cc---CChHHHHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 303 ASI--A-------------LS---PNVPAQIFMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 303 ~~~--~-------------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
... . ++ ..++. ++..++. ++.+ .+...++.++.-+.++++.+.|++.|+++
T Consensus 334 ~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~--alklw~~--------l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~e 403 (490)
T PLN02880 334 PEFLKNKASQANSVVDYKDWQIPLGRRFR--SLKLWMV--------LRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFE 403 (490)
T ss_pred HHHhcCccccccCCCChhccCcCCCCccc--HHHHHHH--------HHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 110 0 00 00000 1111100 0000 11122233333377888889998888888
Q ss_pred cccC-CceeEEeeeccCChhhHHHHhhcCCCC-hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCcCcHHH
Q 041151 364 CNFT-EGAMYSFPQIRLPPKAIEAAKRAGKVP-DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAEEDMPA 438 (463)
Q Consensus 364 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~e~i~~ 438 (463)
+..| +.+...| ++. |... +... .+. ...+..++.++..+.+.+.. + .+..++|+++. +++++++.
T Consensus 404 l~~~~~~~iv~F-r~~-~~~~-~~~~---~~~~n~~l~~~l~~~g~~~v~~t~-~---~g~~~lR~~~~n~~tt~~di~~ 473 (490)
T PLN02880 404 VVTPRIFSLVCF-RLV-PPKN-NEDN---GNKLNHDLLDAVNSSGKIFISHTV-L---SGKYVLRFAVGAPLTEERHVTA 473 (490)
T ss_pred EecCCceEEEEE-EEe-CCCC-Chhh---HHHHHHHHHHHHHhCCCEEEEEEE-E---CCEEEEEEEecCCCCCHHHHHH
Confidence 8655 4444332 232 1110 0000 000 12233343444445555433 2 24558999998 56699999
Q ss_pred HHHHHHHHHHHHHH
Q 041151 439 IMESFKKFNDEFME 452 (463)
Q Consensus 439 ~~~~l~~~l~~~~~ 452 (463)
+++.|.+..+++..
T Consensus 474 ~~~~i~~~~~~~~~ 487 (490)
T PLN02880 474 AWKVLQDEASKLLG 487 (490)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887754
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-11 Score=110.45 Aligned_cols=303 Identities=12% Similarity=0.101 Sum_probs=195.7
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCC---CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSR---GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~---g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
+|..+++++... ..+|..++ -..++++-+..-++. .++.-.++...++.+++.++..++ .|||.
T Consensus 28 l~~~V~~A~~~~-------~lgh~sPe~~qIm~~v~egikyVFkT-----~n~~tf~isgsGh~g~E~al~N~l-ePgd~ 94 (385)
T KOG2862|consen 28 LSGRVQEAMSRP-------SLGHMSPEFVQIMDEVLEGIKYVFKT-----ANAQTFVISGSGHSGWEAALVNLL-EPGDN 94 (385)
T ss_pred CCHHHHHhhcCC-------ccccCCHHHHHHHHHHHHHHHHHhcc-----CCCceEEEecCCcchHHHHHHhhc-CCCCe
Confidence 466666665422 23333322 223455555555542 233355666667889999999998 89999
Q ss_pred EEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHH
Q 041151 158 VVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 218 (463)
Q Consensus 158 Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~ 218 (463)
|++- +|.++ ..-+....+ +.+.+.+.++ ++++|++++-...||+.-+. ++.+-
T Consensus 95 vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~l-e~i~~~lsqh-----~p~~vfv~hgdsSTgV~q~~--~~~~g 166 (385)
T KOG2862|consen 95 VLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPL-EEITEKLSQH-----KPKAVFVTHGDSSTGVLQDL--LAISG 166 (385)
T ss_pred EEEEEechHHHHHHHHHHhhCceeeEEecCcccCccH-HHHHHHHHhc-----CCceEEEEecCccccccchH--HHHHH
Confidence 9985 77777 445667788 9999999987 89999999999999998653 55566
Q ss_pred HHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 219 RFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
++|++|++++++|-+-+- ++.++. | |+++-.+......|++.+.+|+-+ +. .++...++
T Consensus 167 ~lc~k~~~lllVD~VaSl----ggt~F~--------m----DewgVDvaytgSQKaL~aP~GLsi--is---fS~ka~~~ 225 (385)
T KOG2862|consen 167 ELCHKHEALLLVDTVASL----GGTEFE--------M----DEWGVDVAYTGSQKALGAPAGLSI--IS---FSDKALEA 225 (385)
T ss_pred HHhhcCCeEEEEechhhc----CCccce--------e----hhhcccEEEecchhhcCCCCCcce--ee---cCHHHHHH
Confidence 788999999999998774 223221 2 666666777888899987888544 66 47777777
Q ss_pred HHhhhh------------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHH
Q 041151 299 IYKIAS------------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMT 353 (463)
Q Consensus 299 l~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 353 (463)
++..++ .+.+++....+.+.++|. ...++ +++..++.++..++++
T Consensus 226 ~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~----------~I~eeGL~~~~~rH~e~s~~l~ 295 (385)
T KOG2862|consen 226 IRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALA----------LIAEEGLENSWRRHREMSKWLK 295 (385)
T ss_pred HhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 754322 122334444455555543 23333 5667778889999999
Q ss_pred HHhhcCCCcccccC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 354 DGFNSCRNVVCNFT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 354 ~~L~~~pg~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
..|+++ |++.... +-..-..-.+..|.+. |-.+.+..+..++++.+.-|-.-- ....+||.+.
T Consensus 296 ~~l~~~-GLq~fv~~e~~rlptvttv~vp~gv----------Dw~dVv~~~~~~~~vei~gglg~~---~gKv~RIGl~g 361 (385)
T KOG2862|consen 296 LSLEAL-GLQLFVVDEELRLPTVTTVKVPYGV----------DWKDVVAYAMSHYVVEIGGGLGPT---VGKVFRIGLLG 361 (385)
T ss_pred HHHHHh-CccceecChhhccCcceeeecCCCC----------CHHHHHHHHHHhcCEEeccccCCC---cccEEEEEEee
Confidence 999987 7654321 1111111113444432 234556666666677665443322 3348999987
Q ss_pred --CCcCcHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~ 449 (463)
.+.+.++..++.|+..+.+
T Consensus 362 cna~~e~i~~v~~ll~~alq~ 382 (385)
T KOG2862|consen 362 CNANVEYIDNVVELLKLALQR 382 (385)
T ss_pred ccCCcHHHHHHHHHHHHHHhh
Confidence 5667888888888777654
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-11 Score=123.41 Aligned_cols=316 Identities=15% Similarity=0.135 Sum_probs=179.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+.+.... .+.+.. ..+.+..+|+.+.+... -..+.|++++++++|+..+++....-.| .+|+.
T Consensus 71 ~p~v~~Ai~~q~~~~~----~~~~~~-~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~ 143 (451)
T PRK06062 71 HPKVVAAIQEQAARLC----TVAPAH-ANDARSEAARLIAERAP--GDLSKVFFTNGGADANEHAVRMARLHTGRPKVLS 143 (451)
T ss_pred CHHHHHHHHHHHHhcC----CcCCcc-CCHHHHHHHHHHHHhCC--CCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEE
Confidence 6789999988887621 111111 23455666666654321 1236899999999999999986531123 44554
Q ss_pred c----cCcee--------c-----------------CCCcc------cC-------hHHHHHHHHHHHHhcCCceeEEEE
Q 041151 161 L----FHTTW--------K-----------------RQQIG------VL-------IINDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 161 p----~g~~~--------~-----------------~~~~~------~d-------~~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
- +|... + ...+. -| + +.+++.++.. ...++.+|++
T Consensus 144 ~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~le~~l~~~--~~~~iAavii 220 (451)
T PRK06062 144 AYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL-AHLERVIELE--GPSTIAAILL 220 (451)
T ss_pred EeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH-HHHHHHHHhc--CCCceEEEEE
Confidence 3 22211 0 00000 01 4 6677777531 0125677766
Q ss_pred ECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 199 INPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 199 ~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
.--..--|.+ .+.+-+++|.++|++||+++|.||++..+.- ...... ...+|+ ..+ +.+++|.+ |
T Consensus 221 EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGR-----tG~~~a-~~~~gv--~PD-----i~t~gK~l-g 286 (451)
T PRK06062 221 ESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGR-----TGKWFA-IEHFGV--VPD-----LITFAKGV-N 286 (451)
T ss_pred ccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCc-----CcHHHH-HHhcCC--CCC-----eeeechhh-h
Confidence 6333334655 4677899999999999999999999987421 111111 122322 221 35789999 4
Q ss_pred CCCc-eeEEEEecCCChhHHHHHHhh---hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH-HHH
Q 041151 278 ECGQ-RGGYFEMTNIPPKTVDEIYKI---ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRA-RMM 352 (463)
Q Consensus 278 ~~G~-R~G~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l 352 (463)
.|+ .+|.++ +++++.+.+... ...+++.+++...++.+.|+ .+++ +.+.++.++.- +++
T Consensus 287 -gG~~Pigav~---~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~-----------~l~~-~~l~~~~~~~G~~~l 350 (451)
T PRK06062 287 -SGYVPLGGVA---ISEAIAATFADRPYPGGLTYSGHPLACAAAVATIN-----------AMEE-EGIVENAARIGAEVL 350 (451)
T ss_pred -cCCcCcEEEE---EcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHH
Confidence 464 888888 477888887532 22466778888878777763 2221 12344444443 345
Q ss_pred HHHhhc----CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC------hHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 041151 353 TDGFNS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP------DVFYCLRLLEATGISTVPGSGFGQKEGI 422 (463)
Q Consensus 353 ~~~L~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 422 (463)
.+.|++ .|.+.-+...|- +.-+.+..+... ...... ....+...+.++||++.+. +
T Consensus 351 ~~~L~~l~~~~~~v~~vrG~Gl-~~gve~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-------~- 416 (451)
T PRK06062 351 GPGLRELAERHPSVGEVRGLGV-FWALELVADRET-----REPLAPYGASSAAMAAVKAACKERGLLPFVN-------G- 416 (451)
T ss_pred HHHHHHHHhcCCcEEeEecccc-EEEEEEcccccc-----cCCCcccchhhHHHHHHHHHHHHCCcEEeec-------C-
Confidence 555544 322222333443 333223211000 000000 1223445567889998652 1
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+.+|++.. .++++|+++++++.++++++.
T Consensus 417 ~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 417 NRIHVVPPCTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred CEEEEECCccCCHHHHHHHHHHHHHHHHHhh
Confidence 26899886 799999999999999987643
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-11 Score=124.86 Aligned_cols=327 Identities=14% Similarity=0.106 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----C-CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----G-EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~-~g 155 (463)
++.+.+++.+++.... ....+.. -..+.+..+|+.+.+.. +-..+.+++++++++|+..+++.... . +|
T Consensus 69 ~p~v~~Ai~~q~~~~~-~~~~~~~--~~~~~~~~lae~L~~~~--p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~ 143 (466)
T PRK07036 69 REEMADAIADQARRLP-YYTPFGD--MTNAPAAELAAKLAELA--PGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPA 143 (466)
T ss_pred CHHHHHHHHHHHHhCc-ccccccc--cCCHHHHHHHHHHHHhC--CCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCC
Confidence 6789999988877621 1111110 12345566777665431 11235899999999999999986420 1 22
Q ss_pred -CEEEEc----cCcee--------c------------------CC----CcccCh-------HHHHHHHHHHHHhcCCce
Q 041151 156 -DGVVLL----FHTTW--------K------------------RQ----QIGVLI-------INDLQQSVAQARSKGITV 193 (463)
Q Consensus 156 -d~Vlvp----~g~~~--------~------------------~~----~~~~d~-------~~~l~~~l~~~~~~~~~~ 193 (463)
.+|+.- +|... + .+ .++... ++.+++.+... ...++
T Consensus 144 r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~i 221 (466)
T PRK07036 144 KKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSL--GADNI 221 (466)
T ss_pred ccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHc--CCCce
Confidence 455553 33221 0 00 011111 02344444321 11257
Q ss_pred eEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 194 RAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 194 ~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
.+|++.-...-.|.. .+.+-+++|.++|++||+++|.||++..+.-.+ .+......+|+ ..+ +.+++
T Consensus 222 Aavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG-----~~~~~~~~~gv--~PD-----ivt~g 289 (466)
T PRK07036 222 AAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG-----HFFASEAVFGI--QPD-----IITFA 289 (466)
T ss_pred EEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCc-----hhhhhhhhcCC--CCC-----EEEEc
Confidence 777777444445654 567789999999999999999999997652111 11111111211 221 24679
Q ss_pred cccCCCCC-ceeEEEEecCCChhHHHHHHhh-------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 041151 273 KGYWGECG-QRGGYFEMTNIPPKTVDEIYKI-------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILE 343 (463)
Q Consensus 273 K~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (463)
|.+ + .| +.+|.++ +++++.+.+... . ..+++.+++...++.+.|+ .++ .+++.+
T Consensus 290 K~l-~-gG~~Pi~av~---~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le-----------~i~-~~~l~~ 352 (466)
T PRK07036 290 KGL-T-SGYQPLGAVI---ISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIE-----------IME-REGLCE 352 (466)
T ss_pred ccc-c-cCccccEEEE---EcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHH-----------HHH-hCCHHH
Confidence 998 4 57 4899998 488888887531 1 2366778888888877763 222 123555
Q ss_pred HHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh---HHHHHHHHHhcCeEeeCCCCCC
Q 041151 344 SLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD---VFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 344 ~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
+.++.-++|.+.|+++ |-+.-+...| .++.+.+..+... ......+ ...+...+.++||++.+. +
T Consensus 353 ~~~~~g~~l~~~L~~l~~~~~v~~vrG~G-l~~~ve~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---~ 423 (466)
T PRK07036 353 HVREVGPYFEERLASLRELPLVGDVRGDH-LMACVECVADKGS-----KALLPEDIAIGQRIDRHCQERGLLVRPL---E 423 (466)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEeec-eEEEEEEccCccc-----cCCCCchhHHHHHHHHHHHHCCcEEeec---C
Confidence 5666666666666543 2222223333 3444333211100 0000001 223345577889999762 1
Q ss_pred CCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhcccc
Q 041151 418 QKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYEDYR 458 (463)
Q Consensus 418 ~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~~~~ 458 (463)
+.+|++.. .+++|+++++++|.++++++.+.-++++
T Consensus 424 -----~~~~l~Ppl~it~~~id~~~~~l~~al~~~~~~~~~~~ 461 (466)
T PRK07036 424 -----HLCVLSPPLIITRAQIDEIVAILRAAIEETADELAAHG 461 (466)
T ss_pred -----CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 25889877 6999999999999999998877655554
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-11 Score=122.76 Aligned_cols=312 Identities=13% Similarity=0.116 Sum_probs=182.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+++... ....+ ..+.+.++++.+.+... ..+.+++++++++|+..+++....-.| .+|+.
T Consensus 71 ~p~v~~ai~~q~~~~--~~~~~-----~~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~ 140 (428)
T PRK12389 71 HPHITKAITEAAENG--VLYGT-----PTELEIEFAKMLKEAIP---SLEKVRFVNSGTEAVMTTIRVARAYTGRTKIIK 140 (428)
T ss_pred CHHHHHHHHHHHHhC--CccCC-----CCHHHHHHHHHHHHhCC---CCcEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 678899998888762 11111 12445566666654321 246899999999999999986531123 44554
Q ss_pred c----cCcee-----cC-----------CCc------------ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTTW-----KR-----------QQI------------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~~-----~~-----------~~~------------~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
- +|... .. .++ -.|. +.+++.+... +.++.+|++.-...-.|.+
T Consensus 141 ~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~vaavi~EPv~g~~G~~ 216 (428)
T PRK12389 141 FAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDI-EALKEALDKW---GDEVAAVLVEPIVGNFGIV 216 (428)
T ss_pred ECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCH-HHHHHHHHhc---CCcEEEEEEeCCCCCCCCc
Confidence 3 22211 00 000 1167 8888888642 1256777776444545765
Q ss_pred C-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 L-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 ~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
. +.+.+++|.++|++||+++|.||++..+..+ . ... ...+|+ ..+ | .+++|.+ | .|+.+|.++
T Consensus 217 ~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~--~---~~a--~~~~gv--~PD---i--vt~gK~l-g-gG~Pi~av~ 280 (428)
T PRK12389 217 EPKPGFLEAVNELAHEAGALVIYDEVITAFRFM--Y---GGA--QDLLGV--EPD---L--TALGKII-G-GGLPIGAYG 280 (428)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEccccccccC--c---chh--hHHhCC--CCC---e--eeechhh-c-CCCceeEEe
Confidence 4 6777999999999999999999999875321 0 111 111211 121 2 4789999 4 589999997
Q ss_pred ecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----C
Q 041151 288 MTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----C 359 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 359 (463)
+++++.+.+... ...+++.+++...++.+.|+ .+++ +.+.++.+++-++|.+.|++ .
T Consensus 281 ---~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~-----------~l~~-~~l~~~~~~~g~~l~~~L~~l~~~~ 345 (428)
T PRK12389 281 ---GRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLE-----------VLQQ-EGVYEKLDRLGAMLEEGILEAAEKH 345 (428)
T ss_pred ---EHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHH-----------HHhc-ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 588888887531 22356778888877777764 2221 23555666666677666654 3
Q ss_pred CC-cccccCCceeEEeeecc-CCh-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcH
Q 041151 360 RN-VVCNFTEGAMYSFPQIR-LPP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436 (463)
Q Consensus 360 pg-~~~~~~~g~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i 436 (463)
|- ..+....| ++. +.+. -+. ...+. + .........+...+.++||++.+.. . + .+.+++..+++|+
T Consensus 346 ~~~~~v~r~~g-~~g-i~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~Gv~~~~~~---~--~--~~~~~l~~t~e~i 414 (428)
T PRK12389 346 GITITINRLKG-ALT-VYFTDEKVTNYDQA-E-RSDGEAFGKFFKLMLNQGINLAPSK---Y--E--AWFLTTAHTEEDI 414 (428)
T ss_pred CCCEEEEecCc-EEE-EEEeCCCCCChhhh-c-ccCHHHHHHHHHHHHHCCcEeecCC---C--C--CeeecCCCCHHHH
Confidence 21 12222233 332 1121 110 00000 0 0000012334456777899998842 1 1 2567777899999
Q ss_pred HHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDE 449 (463)
Q Consensus 437 ~~~~~~l~~~l~~ 449 (463)
+++++++.+++++
T Consensus 415 d~~~~~l~~~l~~ 427 (428)
T PRK12389 415 EETLEAVDRAFAQ 427 (428)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-11 Score=127.17 Aligned_cols=312 Identities=13% Similarity=0.103 Sum_probs=183.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+.+... . .+.. ..++..++|+.+.+... ..+.+.+++++++|+..+++....-.| .+|+.
T Consensus 117 ~p~v~~av~~ql~~~--~--~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~ 186 (474)
T PLN02482 117 DDEVLAALAETMKKG--T--SFGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGTEACMGVLRLARAYTGREKIIK 186 (474)
T ss_pred CHHHHHHHHHHHhhC--C--CCCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 688999999888762 1 2222 12566667777765421 147999999999999999986531123 45554
Q ss_pred c----cCce----------------e-----cC----CC--cc-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTT----------------W-----KR----QQ--IG-VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~----------------~-----~~----~~--~~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
- +|.. . +. +. .. -|+ +.+++.+... +.++.+|++.-...-.|.+
T Consensus 187 ~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~-~~l~~~l~~~---~~~iAavI~Epv~g~~G~i 262 (474)
T PLN02482 187 FEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDL-EAVKKLFEAN---KGEIAAVILEPVVGNSGFI 262 (474)
T ss_pred ECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCCh-HHHHHHHHhC---CCceEEEEECCCCCCCCCc
Confidence 3 3311 0 00 00 00 167 8899888642 1246666665434445766
Q ss_pred CC-HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 LS-EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 ~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
.+ .+.+++|.++|++||+++|+||++..+.. +. .... ..+|+ .. . +.+|+|.+ | .|+.+|.++
T Consensus 263 ~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~--g~---~ga~--~~~gv--~P---D--i~t~gK~l-g-gG~Pigav~ 326 (474)
T PLN02482 263 VPKKEFLEGLREITKENGALLVFDEVMTGFRI--AY---GGAQ--EYFGI--TP---D--LTTLGKVI-G-GGLPVGAYG 326 (474)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccccCeec--Cc---chHh--HHhCC--CC---C--EEEecchh-h-CCCceEEEE
Confidence 54 67799999999999999999999976532 11 1111 12221 12 1 25789999 5 689999997
Q ss_pred ecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---C
Q 041151 288 MTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---R 360 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---p 360 (463)
+++++.+.+... ...+++.+++...++.+.|+ .+++ .+..+++.++-++|.+.|+++ -
T Consensus 327 ---g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~-----------~l~~-~~~~~~~~~~g~~l~~~L~~l~~~~ 391 (474)
T PLN02482 327 ---GRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLK-----------RLQQ-PGTYEYLDKITKKLIQGILEAGKKA 391 (474)
T ss_pred ---EcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHH-----------HHhc-cCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 688998888532 12355567777777766653 2221 235566666667777777653 1
Q ss_pred Ccccc-cCCceeEEeeeccCCh-hhHHHHhhcCCCC--hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcH
Q 041151 361 NVVCN-FTEGAMYSFPQIRLPP-KAIEAAKRAGKVP--DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436 (463)
Q Consensus 361 g~~~~-~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i 436 (463)
|+.+. ..-++++...-..-|. .+.+. ...+ ....+...+.++||++.|.. +.. + -+++..+++||
T Consensus 392 g~~~~~~~v~g~~gi~f~~~~~~~~~~~----~~~d~~~~~~~~~~l~~~Gv~~~~~~-~~~----~--~psl~ht~~dI 460 (474)
T PLN02482 392 GHEMCGGYISGMFGFFFTEGPVYNFADA----KKSDTAKFARFHRGMLEEGVYLAPSQ-FEA----G--FTSLAHTEEDI 460 (474)
T ss_pred CCCEEEcccceEEEEEEecCCccChhhh----ccCCHHHHHHHHHHHHHCCeEEeccC-CCC----C--cCCCCCCHHHH
Confidence 23332 2223333211011110 00000 0001 11223455667899998732 111 1 15666899999
Q ss_pred HHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDE 449 (463)
Q Consensus 437 ~~~~~~l~~~l~~ 449 (463)
+++++++.+++++
T Consensus 461 d~~l~al~~~l~~ 473 (474)
T PLN02482 461 DFTIAAAERVLAR 473 (474)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-11 Score=123.09 Aligned_cols=308 Identities=12% Similarity=0.069 Sum_probs=173.4
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCC-----CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDS-----RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~-----~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
+|+.+++++.+.+..+. ...|... .-+..+++.++++++ .+..+++++++.++..++.++ .+|
T Consensus 93 l~~~vieAv~~~~~~y~--~l~~~l~~g~~g~r~~~le~~lA~l~g--------ae~alvv~sg~aAi~l~l~~l--~~G 160 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYS--NLEYDLETGKRGSRYSHVEGLLCELTG--------AEDALVVNNNAAAVLLALNTL--AKG 160 (454)
T ss_pred CCHHHHHHHHHHHhccc--chhccccccccchHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHh--CCc
Confidence 38999999998887642 1123211 113578888888874 344556777788898888665 699
Q ss_pred CEEEEc------c-------------Ccee--cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC--cc--CCC
Q 041151 156 DGVVLL------F-------------HTTW--KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT--GQ--CLS 210 (463)
Q Consensus 156 d~Vlvp------~-------------g~~~--~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt--G~--~~s 210 (463)
|+|+++ + |+++ .......++ +.+++++++ ++++|++.+++|++ |. ..+
T Consensus 161 deVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l-~dle~aI~~------~T~lv~~~h~sN~~~~G~~~~~d 233 (454)
T TIGR00474 161 KEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHL-KDYEDAITE------NTALLLKVHTSNYRIVGFTEEVS 233 (454)
T ss_pred CEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCH-HHHHHhcCc------CCEEEEEEccCcccccCCCCCCC
Confidence 999997 2 2232 111223467 999999987 89999999999995 53 444
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccc----cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNI----YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+++|+++|+++|+++++|.+...+. |+-... +.+... .+.+-.+++.|.+|++ |.| ..|++
T Consensus 234 ---l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~-p~~~~~--------~~~GaDiv~fSg~K~L-gGp--~~G~i 298 (454)
T TIGR00474 234 ---IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDE-PTVQEV--------IAAGVDLVTFSGDKLL-GGP--QAGII 298 (454)
T ss_pred ---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCC-cccccH--------hHcCCCEEEecCcccc-CCC--eEEEE
Confidence 8888999999999999998643321 100010 111111 1112238999999998 434 48998
Q ss_pred EecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHhhcC--CC
Q 041151 287 EMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE--QFVRESKGILESLRRRARMMTDGFNSC--RN 361 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg 361 (463)
+ +++++++.+++..- ....+......++...+..-......+. ..++.+....++..++...+.+.|+.. +|
T Consensus 299 ~---g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~ 375 (454)
T TIGR00474 299 V---GKKELIERLKKNPLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPG 375 (454)
T ss_pred E---ECHHHHHhhhhchhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCC
Confidence 8 57888877654321 1222233222222222210000001111 112223334445666777888888764 44
Q ss_pred c--ccccCC----ceeE-------EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 362 V--VCNFTE----GAMY-------SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 362 ~--~~~~~~----g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
+ .+.+.. ||-+ .-+.++.. + -+...+.+.|++....|..- . .++.+.+.
T Consensus 376 ~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~-~-----------~~~~~l~~~lr~~~~~ii~r----~--~~~~~~ld 437 (454)
T TIGR00474 376 FELEIVPGLSQVGGGSLPDERLPSYAVTLTPD-G-----------LSAEKLEARLRELPPPIIGR----I--EDDRFLLD 437 (454)
T ss_pred ceEEEEEcCCcccCCCCcCCCCCeEEEEEecC-C-----------CCHHHHHHHHhcCCCCEEEE----E--ECCEEEEE
Confidence 3 223222 2211 11112211 1 13344556677666433321 1 23367888
Q ss_pred ec-CCcCcHHHHHHHH
Q 041151 429 IL-PAEEDMPAIMESF 443 (463)
Q Consensus 429 ~~-~~~e~i~~~~~~l 443 (463)
+. ..++|++.++++|
T Consensus 438 ~r~~~~~~~~~~~~~~ 453 (454)
T TIGR00474 438 LRTLLEDEEELLIEAL 453 (454)
T ss_pred eCcCCHHHHHHHHHHh
Confidence 88 6778888887766
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-11 Score=123.62 Aligned_cols=319 Identities=13% Similarity=0.067 Sum_probs=177.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+++.+..... .+ ..+..+...++++.+.+..+ -.-+.+++++++++|+..+++.... +++
T Consensus 72 hp~v~~A~~~q~~~~~~~~-~~--~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~ 146 (460)
T PRK12403 72 RKDLAAAAARQMEQLPYYN-MF--FHTTHPAVIELSELLFSLLP--GHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQ 146 (460)
T ss_pred CHHHHHHHHHHHHhCCCee-cc--cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCC
Confidence 6889999998888631110 11 11223445555555544321 1236899999999999999997731 233
Q ss_pred CEEEEc-----cCcee------------------------c-CCC----cccC--------hHHHHHHHHHHHHhcCCce
Q 041151 156 DGVVLL-----FHTTW------------------------K-RQQ----IGVL--------IINDLQQSVAQARSKGITV 193 (463)
Q Consensus 156 d~Vlvp-----~g~~~------------------------~-~~~----~~~d--------~~~~l~~~l~~~~~~~~~~ 193 (463)
..+++. +|... + ... +... . +.+++.+.+.. ..++
T Consensus 147 r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~le~~~~~~~--~~~i 223 (460)
T PRK12403 147 KKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAA-LQLEEKILELG--AENV 223 (460)
T ss_pred CcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHH-HHHHHHHHHhC--CCce
Confidence 445443 22211 0 000 0111 2 34555543211 1246
Q ss_pred eEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 194 RAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 194 ~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
.+|++.--..-.|.+ .+.+-+++|.++|++||+++|.||++..+.-. + ..... ..+|+ .. .|+ +++
T Consensus 224 aavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRt-G----~~~a~-e~~gv--~P---Div--~~g 290 (460)
T PRK12403 224 AGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRT-G----EWFAH-EHFGF--EP---DTL--SIA 290 (460)
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-c----hhhhh-hhcCC--CC---CeE--EEc
Confidence 666665334434654 46677999999999999999999999764211 1 11111 12222 22 133 489
Q ss_pred cccCCCCCc-eeEEEEecCCChhHHHHHHhh-----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 041151 273 KGYWGECGQ-RGGYFEMTNIPPKTVDEIYKI-----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLR 346 (463)
Q Consensus 273 K~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (463)
|.+ + .|. .+|.++ +++++.+.+... ...+++.+++...++.+.|+ .+++ +.+.++.+
T Consensus 291 K~l-g-gG~~Piga~v---~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~-----------~i~~-~~l~~~~~ 353 (460)
T PRK12403 291 KGL-T-SGYVPMGGLV---LSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLK-----------ALRD-EGVVTRVK 353 (460)
T ss_pred ccc-c-ccccceEEEE---ECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHH
Confidence 999 4 574 888888 478888877531 22356677888888877763 2221 12344453
Q ss_pred -HHHHHHHHHhhc----CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 347 -RRARMMTDGFNS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 347 -~~~~~l~~~L~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
++-+++.+.|++ .|-+.-+...| .+.-+.+..+... ...... ....+...+.++||.+.+..
T Consensus 354 ~~~g~~l~~~L~~l~~~~~~i~~vrG~G-l~~gie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Gll~~~~~---- 423 (460)
T PRK12403 354 DDTGPYLQRCLREVFGDHPLVGEVQGAG-LVAALQFAEDKAT-----RKRFANENDLAWRCRTIGFEEGVIIRSTL---- 423 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEeEeecc-eEEEEEEccCccc-----cccccchhHHHHHHHHHHHhCCEEEEecC----
Confidence 455555555543 33222233334 3333333211100 000000 01123344567899997521
Q ss_pred CCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 419 ~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+.+|++.. .+++++++++++|.++++++.+
T Consensus 424 ----~~~~l~Ppl~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 424 ----GRMIMAPALVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred ----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 14899988 5999999999999999988753
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-12 Score=120.66 Aligned_cols=325 Identities=13% Similarity=0.122 Sum_probs=199.3
Q ss_pred cHHHHHHHHHHhhhcC----CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTS----GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
.+.+.+.+...++.++ +...-|+...-+..|.+.||+|++ ..+.|+.+.| -.++..++.+++ +.||.
T Consensus 110 ~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G-------~E~aivYs~g-F~ti~S~ipafs-KrGDI 180 (467)
T KOG1358|consen 110 NEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG-------TEDAIVYSYG-FSTIESAIPAFS-KRGDI 180 (467)
T ss_pred cHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC-------Ccceeeeccc-cchhhhcchhhh-ccCcE
Confidence 7889999999888874 245678888888899999999996 4456766666 668999999998 89999
Q ss_pred EEEc--------cCcee---cCCCcccChHHHHHHHHHHHH---hcCC---c-eeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 158 VVLL--------FHTTW---KRQQIGVLIINDLQQSVAQAR---SKGI---T-VRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 158 Vlvp--------~g~~~---~~~~~~~d~~~~l~~~l~~~~---~~~~---~-~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
|.+. .|... .-.-|..+-|+.|+..+.+.. ...+ . -+.|++..-.-+||.+.+ +.+|++
T Consensus 181 i~~de~~nfaIq~GlqlSRS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p---l~~iv~ 257 (467)
T KOG1358|consen 181 IFVDEAVNFAIQKGLQLSRSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP---LPEIVK 257 (467)
T ss_pred EEEehhhhHHHHHHHhhhhheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc---cHHHHH
Confidence 9987 44444 222344433388877765421 1111 2 345555566677999988 677777
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+..+|...||.||.|+....+ ... ..+..+++.| ..+..++++|++-+++ .. .|+.+ | ..++-..
T Consensus 258 lk~Kyk~RvildEs~SfG~lg-~~G----rGvteH~~v~--~~~iDiv~~sm~~ala-s~---GgFc~---G-~~~i~~h 322 (467)
T KOG1358|consen 258 LKNKYKFRVILDESLSFGVLG-KTG----RGVTEHFGVP--ITDIDIVTASMETALA-SG---GGFCA---G-KSFIADH 322 (467)
T ss_pred HHhhheEEEEEeccccccccc-ccC----ccccccCCCC--ccceeeeeeccccccc-cc---Cceee---c-ceeeEee
Confidence 888999999999999976652 211 1222333332 2235688899998883 22 36665 4 3333333
Q ss_pred Hhhhh--hcccCChHHHH--HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 300 YKIAS--IALSPNVPAQI--FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 300 ~~~~~--~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
+++.+ ..++.+.+... ++..++ ....+..++.+.+++....+...|+...++.+....-+....+
T Consensus 323 QrLSg~~Y~fSAslPp~la~aa~~ai-----------~i~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~~SPi~hl 391 (467)
T KOG1358|consen 323 QRLSGSGYCFSASLPPYLAGAAIKAI-----------LIEEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSPESPIIHL 391 (467)
T ss_pred eeccccceeeeccCchhhhhhHHHHH-----------HHHhhCcchhhhhhccccccchhhhcCCceEEecCcCCceeee
Confidence 33332 12233333222 222222 1334444466667777777888887765677765555555555
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC---CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF---GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f---~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
.++-+.+-.+..... -.+.+...+.+ |+.+.-...- ..-+-..-+||++. .++||++++...|+++...
T Consensus 392 ~l~~~~~s~e~e~~l----L~eivd~~i~~-~~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 392 QLERSYGSREKEEKL----LEEIVDKCIAE-GVLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred eecccccchHHHHHH----HHHHHHHHHhh-cceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 555332211100000 13444555655 7777543211 11112225999999 8999999999999987654
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=127.09 Aligned_cols=315 Identities=11% Similarity=0.067 Sum_probs=182.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+++.+.... ..+. . ..+.+.++|+.+.+... -.-+.+++++++++|+..+++.... .+|
T Consensus 74 ~p~v~~Ai~~ql~~l~~~-~~~~--~-~~~~~~~lae~L~~~~p--~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tg 147 (460)
T PRK06916 74 VPELDEAIREQLNKIAHS-TLLG--L-ANVPSILLAEKLIEVVP--EGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPK 147 (460)
T ss_pred CHHHHHHHHHHHHhCCCc-cccc--c-CCHHHHHHHHHHHHhCC--CCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 788999998888863111 1110 1 12344556666554321 1225899999999999999986531 133
Q ss_pred -CEEEEc----cCcee-------------------------c-CC----Ccc--------cChHHHHHHHHHHHHhcCCc
Q 041151 156 -DGVVLL----FHTTW-------------------------K-RQ----QIG--------VLIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 156 -d~Vlvp----~g~~~-------------------------~-~~----~~~--------~d~~~~l~~~l~~~~~~~~~ 192 (463)
.+|+.- +|... + .+ .++ .++ +.+++.++.. +.+
T Consensus 148 r~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~---~~~ 223 (460)
T PRK06916 148 KQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHL-EELEELLKEK---HEE 223 (460)
T ss_pred CcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHH-HHHHHHHHhC---CCc
Confidence 445543 23111 0 00 001 123 5566666521 226
Q ss_pred eeEEEEEC-CCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIIN-PGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~-p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+.+|++.- ...-.|.+ .+.+-+++|.++|++||+++|.||++..+.-. + ..... ..+++ .. .| .+
T Consensus 224 iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRt-G----~~~a~-~~~gv--~P---Di--v~ 290 (460)
T PRK06916 224 IAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRT-G----KMFAC-EHENV--TP---DI--MT 290 (460)
T ss_pred EEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcC-c----hhhHH-HhcCC--CC---Ce--ee
Confidence 77877764 34445655 58888999999999999999999999764211 1 11111 12221 12 12 36
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHh-------h-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYK-------I-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
++|.+ + .| +.+|.++ +++++.+.+.. . ...+++.+++...++.+.|+ .+++ +.+
T Consensus 291 ~gK~l-~-gG~~Pi~av~---~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~-----------~l~~-~~l 353 (460)
T PRK06916 291 AGKGL-T-GGYLPIAITV---TTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLE-----------LYEK-TNL 353 (460)
T ss_pred eehhh-h-cCccccceee---ecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHH-----------HHHh-ccH
Confidence 79999 4 57 5899998 58888877742 1 12356678888777777763 2221 235
Q ss_pred HHHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCC
Q 041151 342 LESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~ 415 (463)
.++.+++-+++.+.|+++ |.+.-+...|-+ .-+.+..+... ...... ....+...+.++||++.+..
T Consensus 354 ~~~~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm-~giel~~~~~~-----~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g- 426 (460)
T PRK06916 354 IEQVARKTEYVATQLEDLFALKHVGDIRQLGLM-VGIELVKNKET-----KEPFEWTERVGVQVCKRSRELGMLTRPLG- 426 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCeEEeecCCce-eeEEeeccccc-----ccCCCchhhHHHHHHHHHHHCCeEEEecC-
Confidence 566666667777777654 222223334433 22222211100 000000 11234455778999998731
Q ss_pred CCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 416 f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+.+|+..+ .+++|+++++++|.++++++
T Consensus 427 -------~~l~~~Ppl~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 427 -------NTIVFMPPLASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred -------CEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence 25888866 89999999999999999764
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-11 Score=122.02 Aligned_cols=308 Identities=15% Similarity=0.075 Sum_probs=178.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+++... ....+ ..+...++|+.+.+.. ..+.+.+++++++|...+++.... ...++|+.
T Consensus 93 ~p~i~~Av~~q~~~~--~~~~~-----~~~~~~~lAe~l~~~~----~~~~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~ 161 (453)
T PRK07046 93 PAPVARALAEQARRG--LTTML-----PSEDAAWVGEELARRF----GLPYWQVATTATDANRFVLRWARAVTGRPKILV 161 (453)
T ss_pred CHHHHHHHHHHHHhC--CCCCC-----CCHHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 688999998888762 11111 1245555666665442 357999999999999999986531 12345554
Q ss_pred c----cCce---e---------cC----------------CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTT---W---------KR----------------QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~---~---------~~----------------~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
- +|.. . .. ..+ -|+ +.+++.+.. .++.+|++.--..-.|.+
T Consensus 162 ~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~-~~l~~~l~~-----~~vAavi~EPi~g~~G~~ 234 (453)
T PRK07046 162 FNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDL-AALEAALAD-----GDVAAVLAEPAMTNIGMV 234 (453)
T ss_pred ECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCH-HHHHHHhCC-----CCeEEEEECCCCCCCCCc
Confidence 3 3321 0 00 001 167 888888742 167777666222223544
Q ss_pred -CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 -LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 -~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
.+.+-++++.++|++||+++|.||+.. +..+.+. ... .+++ .. .| .+++|.+ | .|+.+|.++
T Consensus 235 ~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg----~~~---~~gv--~P---Di--~t~gK~l-g-gG~Pi~av~ 297 (453)
T PRK07046 235 LPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGG----YTR---AHGL--EP---DF--LVVGKPI-A-GGVPCAVYG 297 (453)
T ss_pred CCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcc----hhH---HhCC--Cc---cc--eeehhhh-c-CCCcceeee
Confidence 455679999999999999999999987 4331111 111 1111 12 12 3589999 4 589999888
Q ss_pred ecCCChhHHHHHHhh----------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 288 MTNIPPKTVDEIYKI----------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~----------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
+++++.+.+... ...+++.+++...++.+.|+ .++ .++..++..+.-+.|.+.|+
T Consensus 298 ---g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~-----------~l~-~~~~~~~~~~~g~~l~~~L~ 362 (453)
T PRK07046 298 ---FSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLA-----------EVM-TEAAYAHMLALAARLAAGLR 362 (453)
T ss_pred ---ehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHH-----------HHh-cccHHHHHHHHHHHHHHHHH
Confidence 688888888631 12356778888877777764 111 11234444455555555554
Q ss_pred c----CCCccc-ccCCceeEEeeecc--CChhhHHHHhhcCCCC-hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 358 S----CRNVVC-NFTEGAMYSFPQIR--LPPKAIEAAKRAGKVP-DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 358 ~----~pg~~~-~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+ . ++.+ +...|.++.+ .+. .+....+... ..+. -...+...+.++||++.|. + ..++++.
T Consensus 363 ~l~~~~-~~~~~v~g~G~~~~i-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Gv~~~~~---~-----~~~~~~p 430 (453)
T PRK07046 363 AVIARH-GLPWHVTRVGARVEF-QFAPTPPRNGAEAAA--ALDPELEAALHLYLLNRGVLITPF---H-----NMMLVCP 430 (453)
T ss_pred HHHHhC-CCCeEEEEeCcEEEE-EEeCCCCCCHHHHhc--ccCHHHHHHHHHHHHHCCCEEecc---c-----CcEEEeC
Confidence 3 3 3222 2223433221 121 1111100000 0000 1122234455689999762 1 1478888
Q ss_pred cCCcCcHHHHHHHHHHHHHHHH
Q 041151 430 LPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 430 ~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
..+++||+++++++.++++++.
T Consensus 431 ~~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 431 ATTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred CCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999987653
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-11 Score=121.24 Aligned_cols=326 Identities=15% Similarity=0.078 Sum_probs=183.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+.+.+.. .+....-..+....+++.+.+... -..+.+++++++++++..+++.... ++|
T Consensus 48 ~p~v~~av~~ql~~~~----~~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~ 121 (443)
T PRK07483 48 HPRVIAAIHAQIDRLA----YAHTSFFTTEPAEALADRLVAAAP--AGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQ 121 (443)
T ss_pred CHHHHHHHHHHHHhcc----CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 6788999988887621 011110113455566666654311 1236899999999999999986531 133
Q ss_pred -CEEEEc----cCcee-------------------c-------CCCccc-----C--------hHHHHHHHHHHHHhcCC
Q 041151 156 -DGVVLL----FHTTW-------------------K-------RQQIGV-----L--------IINDLQQSVAQARSKGI 191 (463)
Q Consensus 156 -d~Vlvp----~g~~~-------------------~-------~~~~~~-----d--------~~~~l~~~l~~~~~~~~ 191 (463)
.+|+.- +|... + ...+.. + . +.+++.+... ...
T Consensus 122 r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~--~~~ 198 (443)
T PRK07483 122 RRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLA-DELEAKILEL--GPD 198 (443)
T ss_pred CcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHH-HHHHHHHHhc--CCC
Confidence 345553 22211 0 000000 0 2 3455544321 012
Q ss_pred ceeEEEEECCC-CCCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 192 TVRAMVIINPG-NPTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 192 ~~~~i~l~~p~-NPtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
++.+|++.--. +-.| ...+.+-++.|.++|++||+++|.||+...+.- ...+... ..+++ ..+ +-
T Consensus 199 ~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGR-----tG~~~a~-~~~gv--~PD-----iv 265 (443)
T PRK07483 199 TVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGR-----TGTLFAC-EEDGV--APD-----LV 265 (443)
T ss_pred ceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCccc-----CcHHHHH-hhcCC--CCC-----ee
Confidence 56777666333 2225 455777899999999999999999999987521 1112211 12221 121 24
Q ss_pred cCCcccCCCCCc-eeEEEEecCCChhHHHHHHhh-----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 041151 270 TVSKGYWGECGQ-RGGYFEMTNIPPKTVDEIYKI-----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILE 343 (463)
Q Consensus 270 S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (463)
+++|.+ + .|+ .+|.++ .++++.+.+... ...+++.+++...++.+.|+ .+++ +++.+
T Consensus 266 ~~gK~l-~-gG~~Pi~av~---~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~-----------~i~~-~~l~~ 328 (443)
T PRK07483 266 TIAKGL-G-AGYQPIGAVL---ASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQR-----------VIAE-DGLLA 328 (443)
T ss_pred eehhhh-c-cCccccEEEE---EcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHH-----------HHHh-cCHHH
Confidence 569999 4 585 899998 488888877532 22467788888888887763 2221 23455
Q ss_pred HHHHHHHHHHHHhhc----CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCCC
Q 041151 344 SLRRRARMMTDGFNS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 344 ~~~~~~~~l~~~L~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f 416 (463)
+.++.-++|.+.|++ .|.+.-+...|- +.-+.+..+... ....+. ....+...+.++||++.+....
T Consensus 329 ~~~~~g~~l~~~L~~l~~~~~~i~~vRG~Gl-m~gie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~ 402 (443)
T PRK07483 329 NVRARGEQLRARLRERLGQHPHVGDIRGRGL-FVGVELVADRAT-----KAPFDPALKLHARIKREAMARGLMVYPMGGT 402 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeEeeccc-EEEEEEeecccc-----cCCCCchhhHHHHHHHHHHHCCcEEEecCcc
Confidence 556666666666654 232222233333 333223111000 000000 1223445567789999874211
Q ss_pred CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 417 ~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
......+.+|+... .+++++++++++|.+++.+...
T Consensus 403 ~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~ 440 (443)
T PRK07483 403 IDGVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA 440 (443)
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 00011247999888 7999999999999999987654
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-11 Score=124.43 Aligned_cols=315 Identities=14% Similarity=0.064 Sum_probs=182.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----C-CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----G-EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~-~g 155 (463)
++.+.+++.+++.+.. +.... .-..+.+..+++.+.+... -..+.+++++++++|+..+++.... . +|
T Consensus 65 ~p~v~~Ai~~ql~~l~---~~~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~ 138 (466)
T PRK07030 65 NPRINQRIKDQVDQLE---HVILA-GFSHEPVIELSERLVKITP--PGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPR 138 (466)
T ss_pred CHHHHHHHHHHHHhcC---Ccccc-ccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCC
Confidence 6788899988887621 11110 1113455566666654311 1235899999999999999987520 1 23
Q ss_pred -CEEEEc----cCcee-------------------------c-CCC----ccc--------ChHHHHHHHHHHHHhcCCc
Q 041151 156 -DGVVLL----FHTTW-------------------------K-RQQ----IGV--------LIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 156 -d~Vlvp----~g~~~-------------------------~-~~~----~~~--------d~~~~l~~~l~~~~~~~~~ 192 (463)
.+|+.- +|... + ... ++. ++ +.+++.+... +.+
T Consensus 139 r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l-~~le~~~~~~---~~~ 214 (466)
T PRK07030 139 KKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMF-AHMEQTLAEH---HDE 214 (466)
T ss_pred CcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHH-HHHHHHHHhC---CCc
Confidence 345443 33221 0 000 000 23 5566666531 225
Q ss_pred eeEEEEEC-CCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIIN-PGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~-p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+.+|++.- ...-.|. ..+.+-+++|.++|++||+++|.||++..+.-.+ .+... ..+|+ ..+ | -+
T Consensus 215 iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG-----~~~a~-~~~gv--~PD---i--v~ 281 (466)
T PRK07030 215 IAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG-----TMFAC-EQAGI--RPD---F--LC 281 (466)
T ss_pred eEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccc-----cchHH-HhcCC--CCC---E--Ee
Confidence 77776664 2333465 5566789999999999999999999998753211 11111 11211 221 2 34
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHh--------hhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYK--------IASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
++|.+ + .| +.+|.++ +++++.+.+.. ....+++.+++...++.+.|+ .+++ +++
T Consensus 282 ~gKgl-~-gG~~Pi~av~---~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~-----------~i~~-~~l 344 (466)
T PRK07030 282 LSKAL-T-GGYLPLAAVL---TTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLD-----------IFEQ-DNV 344 (466)
T ss_pred eehhc-c-CCcccceEEE---ecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHH-----------HHHh-cCH
Confidence 69999 4 68 4899998 58888887742 122467778888888887764 2221 234
Q ss_pred HHHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh---HHHHHHHHHhcCeEeeCCCC
Q 041151 342 LESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD---VFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~gI~v~pg~~ 415 (463)
.++.++.-++|.+.|+++ |.+.-+...| +++-+.+...... ......+ ...+...+.++||++.+.
T Consensus 345 ~~~~~~~G~~l~~~L~~l~~~~~v~~vrG~G-l~~gie~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-- 416 (466)
T PRK07030 345 IENNRALARRMAEATAHLADHPHVAEVRQTG-MILAIEMVQDKAS-----KTPYPWQERRGLKVYQHALERGALLRPL-- 416 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEeEece-eEEEEEeccCccc-----cccCcchhHHHHHHHHHHHHCCeEEEec--
Confidence 555666666666666553 3332233334 3333333211100 0000001 122345567889999762
Q ss_pred CCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 416 f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+ ..+|+..+ .+++|+++++++|.++++++
T Consensus 417 -g-----~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 417 -G-----SVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred -C-----CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 1 25898866 89999999999999999887
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-11 Score=121.20 Aligned_cols=328 Identities=13% Similarity=0.017 Sum_probs=177.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEc-CCcHHHHHHHHHHHhcCCC-CEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLT-DGASKGVMQTLNCVIRGEG-DGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t-~G~~~al~~~~~~l~~~~g-d~V 158 (463)
++.+.+++.+++.+. . .+....-..+.+.++++.+.+........ +.++++ +++++|+..+++....-.| .+|
T Consensus 81 ~p~v~~Ai~~ql~~~--~--~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~i 156 (464)
T PRK06938 81 HPVVIEAIQQVLADE--L--PLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTV 156 (464)
T ss_pred CHHHHHHHHHHHHhh--h--cccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeE
Confidence 678999998887641 1 11111111244445555554321111111 256564 7889999999996531233 445
Q ss_pred EEc----cCcee-------------------------c-CCCc----c--------cChHHHHHHHHHHHHhcCCceeEE
Q 041151 159 VLL----FHTTW-------------------------K-RQQI----G--------VLIINDLQQSVAQARSKGITVRAM 196 (463)
Q Consensus 159 lvp----~g~~~-------------------------~-~~~~----~--------~d~~~~l~~~l~~~~~~~~~~~~i 196 (463)
+.- +|... + ...+ + .++ +.+++.+.+......++.+|
T Consensus 157 i~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~~~~~iAAv 235 (464)
T PRK06938 157 LSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANL-HYLENLLDDPESGVVLPAAV 235 (464)
T ss_pred EEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHH-HHHHHHHHhhccCCCceEEE
Confidence 543 22111 0 0000 0 124 66777775421111246777
Q ss_pred EEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCccc
Q 041151 197 VIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275 (463)
Q Consensus 197 ~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 275 (463)
++.--..--|.+ .+.+-++++.++|++||+++|.||+...+.- ...+... ..+|+ ..+ | -+++|.+
T Consensus 236 I~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGR-----tG~~~a~-e~~gv--~PD---i--v~~gKgl 302 (464)
T PRK06938 236 ILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGR-----TGKMFAF-EHAGI--IPD---V--VVLSKAI 302 (464)
T ss_pred EEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc-----CcHHHHH-HhcCC--CCC---E--EEeeccc
Confidence 665322223654 5688899999999999999999999987521 1122221 22222 221 2 4469999
Q ss_pred CCCCCceeEEEEecCCChhHHHHHHhh-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 276 WGECGQRGGYFEMTNIPPKTVDEIYKI-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 276 ~g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
| .|+.+|.++. .+++ +.+... ...+++.++++..++.+.|+ .++ .+++.++.++.-++|.+
T Consensus 303 -g-gG~PlsAv~~---~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~-----------~l~-~~~l~~~~~~~G~~l~~ 364 (464)
T PRK06938 303 -G-GSLPLAVVVY---REWL-DTWQPGAHAGTFRGNQMAMAAGSATLR-----------YIK-EHRLAEHAAAMGERLRE 364 (464)
T ss_pred -c-CCCceEEEee---hhHh-hccCCCCCCCCCCcCHHHHHHHHHHHH-----------HHH-HhHHHHHHHHHHHHHHH
Confidence 5 5899999984 5553 544322 22467788888888887764 222 12344555555556666
Q ss_pred HhhcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCC-ChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 355 GFNSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV-PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 355 ~L~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
.|+++ |.+.-+...| +++-+.+..+....+........ .-...+...+.++||.+.++..++ +.+|+..
T Consensus 365 ~L~~l~~~~~~i~~VrG~G-lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~-----~~l~~~P 438 (464)
T PRK06938 365 HLRQLQRDYPQLGDVRGRG-LMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGGRHG-----SVVRFLP 438 (464)
T ss_pred HHHHHHHhCCCeeeeeccc-eEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCC-----CEEEEEC
Confidence 66543 3222233334 33333332111000000000000 012223445667999998753222 3699986
Q ss_pred c--CCcCcHHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+ .+++|++++++++.+++.++-
T Consensus 439 pl~it~~eid~~~~~l~~~l~~~~ 462 (464)
T PRK06938 439 PLIITAEQIDEVAEIFAEAVAAAV 462 (464)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHh
Confidence 6 899999999999999997753
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-11 Score=127.44 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cC-CCc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KR-QQI 171 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~-~~~ 171 (463)
.+..+..|+.++ .....+++||++.++..++.+++ ++||+|+++ .|+++ +. +.+
T Consensus 208 ~eAq~~aA~~fg-------A~~t~FlvNGST~gn~a~i~a~~-~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~ 279 (755)
T PRK15029 208 GESEKYAARVFG-------ADRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRY 279 (755)
T ss_pred HHHHHHHHHHhC-------CCcEEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeEEEeccccccc
Confidence 455555566554 23578899999999999999998 999999999 55555 21 222
Q ss_pred ----ccC-----hHHHHHHHHHHHHh----cCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc-c
Q 041151 172 ----GVL-----IINDLQQSVAQARS----KGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ-N 237 (463)
Q Consensus 172 ----~~d-----~~~~l~~~l~~~~~----~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~-~ 237 (463)
+++ . +.++++++.... .+++++++++++|+. -|.+.. +++|+++|+++++.|++||||.. +
T Consensus 280 Gi~~~i~~~~~~~-e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~ 354 (755)
T PRK15029 280 GIIGPIYPQEMQP-ETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_pred CCccCCCccccCH-HHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhcCCeEEEECcccccc
Confidence 234 7 899999876421 123556999999988 599977 78888899999999999999964 3
Q ss_pred ccCCCCCccchHHHH--HhcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEe
Q 041151 238 IYQDERPFVSSKKVL--MDMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEM 288 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~ 288 (463)
.|.+..+..+..... ... +. .++++.|.+|++. ++. .+++-+
T Consensus 355 ~F~~~~p~~sa~~~~~~~~~----Ga--d~~vvqStHKtL~---alTQaS~LHv 399 (755)
T PRK15029 355 RFNPIYADHYAMRGEPGDHN----GP--TVFATHSTHKLLN---ALSQASYIHV 399 (755)
T ss_pred ccCccccccccccccccccC----CC--ceEEEEchhhccc---chhhhhhhee
Confidence 442211211211000 001 11 2489999999984 455 455554
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-11 Score=120.41 Aligned_cols=303 Identities=12% Similarity=0.112 Sum_probs=171.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlv 160 (463)
++.+.+++.+.+... . .|... ...+-.+++.+.+... ..+.+++++++++|+..+++....-.| ..|+.
T Consensus 66 ~p~v~~Ai~~q~~~~--~--~~~~~---~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~ 135 (431)
T PRK06209 66 YPPVVEAVREALQDG--C--NFTRP---SAIELDAAESFLELID---GADMVKFCKNGSDATSAAVRLARAYTGRDLVAR 135 (431)
T ss_pred CHHHHHHHHHHHHhC--c--CCCCC---CHHHHHHHHHHHHhCC---ccceEEEecCHHHHHHHHHHHHHHHhCCCeEEE
Confidence 678999998888762 1 22211 2333344555543211 136899999999999999996431123 33332
Q ss_pred c------------cCcee--c---------CCCcc-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 161 L------------FHTTW--K---------RQQIG-VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 161 p------------~g~~~--~---------~~~~~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
- .|... . ...+. -|+ +.|++.++.. ..++.+|++ -|. .|...+.+.+++
T Consensus 136 ~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~aavi~-Epv--~g~~~~~~~l~~ 208 (431)
T PRK06209 136 CADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYNDI-ASLEALFEDH---PGRIACVIL-EPA--TADEPQDGFLHE 208 (431)
T ss_pred eccCccccccccccccCCCCCCCChhHhccccccCCCCH-HHHHHHHHhC---CCCEEEEEE-ccc--cCCCCCHHHHHH
Confidence 1 11111 0 00111 167 8899888642 114555555 442 344677889999
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
|.++|++||+++|+||++..+.+. . . .....+++ .. -+.+++|.+ | .|+.+|+++ +++++.
T Consensus 209 l~~lc~~~g~lLI~DEv~tG~~~~---~--~--g~~~~~gv--~P-----Di~t~gK~l-g-gG~p~~av~---~~~~i~ 269 (431)
T PRK06209 209 VRRLCHENGALFILDEMITGFRWH---M--R--GAQKLYGI--VP-----DLSCFGKAL-G-NGFAVSALA---GKREYM 269 (431)
T ss_pred HHHHHHHcCCEEEEEcccccCCcC---c--c--hhhHHhCC--Cc-----ceeeehhhh-c-CCcccEEEE---EHHHHH
Confidence 999999999999999999765331 1 1 11111211 11 137789999 5 578899998 478887
Q ss_pred HH--HHhh-------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcc
Q 041151 297 DE--IYKI-------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CRNVV 363 (463)
Q Consensus 297 ~~--l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~pg~~ 363 (463)
+. +... .+.+++++++...++.+.|+ .+++ +.+.++..++-+++.+.|++ + ++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~-----------~i~~-~~~~~~~~~~g~~l~~~L~~~~~~~-~~~ 336 (431)
T PRK06209 270 ELGGLEHTDRERVFLLSTTHGAETHALAAAIATMA-----------IYRD-EDVIERLHEQGAKLAAGVNEAAAEH-GLQ 336 (431)
T ss_pred hhhcccccCCCCceeeccCCCCCHHHHHHHHHHHH-----------HHhc-cCHHHHHHHHHHHHHHHHHHHHHhC-CCC
Confidence 76 3111 12244555666666666653 2221 13455566666666666654 3 222
Q ss_pred c-ccCCceeEEeeeccC-ChhhHHHHhhcCCCCh--HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHH
Q 041151 364 C-NFTEGAMYSFPQIRL-PPKAIEAAKRAGKVPD--VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAI 439 (463)
Q Consensus 364 ~-~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~ 439 (463)
. ....|.+..+.-+.. +.+ .... ...+...+.++||.+. .++|+..+++++|+++
T Consensus 337 ~~vr~~G~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~~Gi~~p------------~l~is~~ht~~dId~~ 395 (431)
T PRK06209 337 DHVRVSGRPCCLTYSTLDGNG---------QPSQAFRTLFLQETIRRGVLMP------------SLVVSYAHGDADIERT 395 (431)
T ss_pred eEEEeecceEEEEEecCCccc---------CCcHHHHHHHHHHHHHCCcccc------------cccccccCCHHHHHHH
Confidence 1 122333332211111 100 0001 1123344667899762 1577767899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 041151 440 MESFKKFNDEFMEQY 454 (463)
Q Consensus 440 ~~~l~~~l~~~~~~~ 454 (463)
+++|.++++++.+.+
T Consensus 396 l~~l~~~l~~~~~~~ 410 (431)
T PRK06209 396 IDAVHGALGVYRKAL 410 (431)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999886543
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-11 Score=122.14 Aligned_cols=317 Identities=16% Similarity=0.069 Sum_probs=177.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC---CCCCcEEEcCCcHHHHHHHHHHHhc------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP---SDPELIFLTDGASKGVMQTLNCVIR------ 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~---~~~~~i~~t~G~~~al~~~~~~l~~------ 152 (463)
++.+.+++.+.+.+.. +...... ..+.+..+++.+.+..... -+.+.+++++++++|+..+++....
T Consensus 82 ~p~i~~Ai~~q~~~l~---~~~~~~~-~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~~g 157 (472)
T PRK08742 82 EPRIGAAIAAQAGELE---QVMLAGF-THEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHNRG 157 (472)
T ss_pred CHHHHHHHHHHHHhCC---Ccccccc-CCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcC
Confidence 6788899988876521 1111111 1244566676665432110 0235899999999999999987531
Q ss_pred CCC-CEEEEc----cCcee-----c---------------------CCC----ccc--------ChHHHHHHHHHHHHhc
Q 041151 153 GEG-DGVVLL----FHTTW-----K---------------------RQQ----IGV--------LIINDLQQSVAQARSK 189 (463)
Q Consensus 153 ~~g-d~Vlvp----~g~~~-----~---------------------~~~----~~~--------d~~~~l~~~l~~~~~~ 189 (463)
++| .+|+.- +|... . .+. ++. ++ +.+++.+...
T Consensus 158 ~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~--- 233 (472)
T PRK08742 158 EHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAA-DALQALFEQS--- 233 (472)
T ss_pred CCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHH-HHHHHHHHhC---
Confidence 123 455553 33221 0 000 000 23 5566666421
Q ss_pred CCceeEEEEEC-CCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEE
Q 041151 190 GITVRAMVIIN-PGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVS 267 (463)
Q Consensus 190 ~~~~~~i~l~~-p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (463)
..++.+|++.- ..+-.|. ..+.+-++++.++|++||+++|.||+...+.-. +. +... ..+|+ ..+ |
T Consensus 234 ~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRt-G~----~~a~-e~~gv--~PD---i- 301 (472)
T PRK08742 234 PGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRT-GT----LFAC-EQAGV--MPD---L- 301 (472)
T ss_pred CCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCC-cc----chHH-HhcCC--CCC---E-
Confidence 22677776664 2444565 557788999999999999999999999875321 11 1111 11211 221 2
Q ss_pred EecCCcccCCCCCc-eeEEEEecCCChhHHHHHHhh-------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 041151 268 FHTVSKGYWGECGQ-RGGYFEMTNIPPKTVDEIYKI-------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESK 339 (463)
Q Consensus 268 ~~S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (463)
-+++|.+ + .|+ .+|.++ +++++.+.+... ...+++.+++...++.+.|+ .+++ +
T Consensus 302 -v~~gKgl-~-gG~~Plaav~---~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~-----------~i~~-~ 363 (472)
T PRK08742 302 -LCLSKGL-T-GGFLPLSAVL---ATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLD-----------IFAD-D 363 (472)
T ss_pred -EEEcccc-c-CCCCCcceee---ccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHH-----------HHHH-C
Confidence 3469999 4 574 899998 588888877421 22466778888888877764 1211 1
Q ss_pred HHHHHHHHHHHHHHHH---hhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh---HHHHHHHHHhcCeEeeCC
Q 041151 340 GILESLRRRARMMTDG---FNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD---VFYCLRLLEATGISTVPG 413 (463)
Q Consensus 340 ~~~~~~~~~~~~l~~~---L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~gI~v~pg 413 (463)
++.++.++.-+++.+. +.+.|.+.-+...|-+ .-+.+..+.. +......+ ...+...+.++||++.+.
T Consensus 364 ~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG~Gl~-~giel~~~~~-----~~~~~~~~~~~~~~~~~~~~~~Gll~~~~ 437 (472)
T PRK08742 364 DVIARNQPTAARMTQLAAQIGEHPHVADVRQAGMV-VAFELTRGGN-----KRTPFPPAARVGLHAYRAALARGVVLRPL 437 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCeeeEeccceE-EEEEeccCcc-----ccccCCchhHHHHHHHHHHHHCCeEEEec
Confidence 2233333333333333 3334433333444433 3322221110 00000001 122345566789999772
Q ss_pred CCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 414 SGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 414 ~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+ +.+||... .+++|+++++++|.++++++
T Consensus 438 ---g-----~vi~~~PpL~it~~ei~~~~~~l~~~l~~~ 468 (472)
T PRK08742 438 ---G-----DVLYWMPPYCVDEAQLALLADTTRHAIDEA 468 (472)
T ss_pred ---C-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2 26999998 79999999999999999875
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-12 Score=126.70 Aligned_cols=230 Identities=16% Similarity=0.203 Sum_probs=136.0
Q ss_pred CCCC-CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----
Q 041151 105 DSRG-IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---- 166 (463)
Q Consensus 105 ~~~g-~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---- 166 (463)
.+.| +.+..+..|+.++ .....+++||++.++..++.+++ +|||.|+++ .|+++
T Consensus 63 ~p~G~I~eAe~~aA~~fG-------Ad~t~flvnGsT~g~~a~i~a~~-~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~ 134 (417)
T PF01276_consen 63 DPEGIIKEAEELAARAFG-------ADKTFFLVNGSTSGNQAMIMALC-RPGDKVLVDRNCHKSVYNALILSGAIPVYIP 134 (417)
T ss_dssp TTBTHHHHHHHHHHHHHT-------ESEEEEESSHHHHHHHHHHHHHT-TTTCEEEEETT--HHHHHHHHHHTEEEEEEE
T ss_pred CCccHHHHHHHHHHHhcC-------CCeEEEEecCchHHHHHHHHHhc-CCCCEEEEcCCcHHHHHHHHHHcCCeEEEec
Confidence 3444 3566666777765 23478899999999999999998 999999999 45554
Q ss_pred cC----------CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 167 KR----------QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 167 ~~----------~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
+. ....++. +.+++++++..... .+++++|++|+. -|.++. +++|+++|+++++.|++||||..
T Consensus 135 p~~~~~gi~~~i~~~~~~~-~~i~~~l~~~p~~k-~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~~~~llvDEAhGa 208 (417)
T PF01276_consen 135 PEDNEYGIIGGISPDEFNE-EDIEEALKEHPDAK-APRLVVLTSPTY-YGVCYD---IKEIAEICHKHGIPLLVDEAHGA 208 (417)
T ss_dssp EEE-TTS-BEEB-GGGGSH-HHHHHHHHHCTTCH-CESEEEEESS-T-TSEEE----HHHHHHHHCCTECEEEEE-TT-T
T ss_pred CCccccCCccCCChhhhhH-HHHHHHHHhCcccc-CceEEEEeCCCC-CeEEEC---HHHHHHHhcccCCEEEEEccccc
Confidence 21 1222345 77888887642111 145599999988 599977 88889999999999999999964
Q ss_pred c-ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh-hHHHHHHhhhh--hcccCChH
Q 041151 237 N-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-KTVDEIYKIAS--IALSPNVP 312 (463)
Q Consensus 237 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~l~~~~~--~~~~~~~~ 312 (463)
. .|. +. +.+... +|-+...+..++++.|.+|++.+++. .+++-+.+ +. --.++++.... .+.+++-+
T Consensus 209 h~~F~-~l-p~~a~~----~gad~~~~~~~~vvqS~HKtL~altQ--ts~lh~~~-~~~v~~~~~~~~l~~~~TTSPSY~ 279 (417)
T PF01276_consen 209 HFGFH-PL-PRSALA----LGADRPNDPGIIVVQSTHKTLPALTQ--TSMLHVKG-DRIVDHERVNEALSMHQTTSPSYP 279 (417)
T ss_dssp TGGCS-GG-GTTCSS----TTSS-CTSBEEEEEEEHHHHSSS-TT---EEEEEET-CCCTTHHHHHHHHHHHS-SS--HH
T ss_pred cccCC-CC-ccchhh----ccCccccccceeeeechhhccccccc--ceEEEecC-CCcccHHHHHHHHHHHcCCChHHH
Confidence 3 341 11 111111 11111345578999999999854443 56666522 22 23466666554 23344444
Q ss_pred HHHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHh---hcCCCcccccC
Q 041151 313 AQIFMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGF---NSCRNVVCNFT 367 (463)
Q Consensus 313 ~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L---~~~pg~~~~~~ 367 (463)
..+.+..+. ... ..+-+++.++..++.+.+++.+ +++.++++..|
T Consensus 280 lmASlD~a~----------~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~ 328 (417)
T PF01276_consen 280 LMASLDVAR----------AQMEEEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGP 328 (417)
T ss_dssp HHHHHHHHH----------HHHSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-
T ss_pred HHHHHHHHH----------HHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Confidence 333332221 111 1233456666667777777777 55666665544
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-10 Score=117.74 Aligned_cols=320 Identities=13% Similarity=0.068 Sum_probs=179.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+.+++.+++.+... ...+. .-..+.+..+|+.+.+..+ +-..+.+++++++++|+..+++.... .+|
T Consensus 60 ~p~v~~Ai~~ql~~~~~-~~~~~--~~~~~~~~~lae~L~~~~~-~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~ 135 (449)
T PRK07481 60 REEVKEAIVRQLDELEY-YSTFD--GTTHPRAIELSYELIDMFA-PEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPE 135 (449)
T ss_pred CHHHHHHHHHHHHhccc-eeccc--ccCCHHHHHHHHHHHHhcC-CCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 67888999888876210 00110 0123555666666654321 11235899999999999999986531 133
Q ss_pred -CEEEEc----cCcee-------------------------c-CC----Ccc-cChHHHHHHHHHHH----H--hcCCce
Q 041151 156 -DGVVLL----FHTTW-------------------------K-RQ----QIG-VLIINDLQQSVAQA----R--SKGITV 193 (463)
Q Consensus 156 -d~Vlvp----~g~~~-------------------------~-~~----~~~-~d~~~~l~~~l~~~----~--~~~~~~ 193 (463)
.+|+.- +|... + .+ .++ -|. +.+++.+.+. - ....++
T Consensus 136 r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~le~~i~~~~~~~i 214 (449)
T PRK07481 136 RTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDP-EELARICARLLEREIAFQGPDTI 214 (449)
T ss_pred CcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCH-HHHHHHHHHHHHHHHHhcCCCcE
Confidence 345443 22111 0 00 011 134 4443322110 0 111257
Q ss_pred eEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 194 RAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 194 ~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
.+|++.-...-.|.+ .+.+-+++|.++|++||+++|.||++..+.-.+ .+... ..+++ ..+ +-+++
T Consensus 215 AAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG-----~~~a~-~~~gv--~PD-----iv~~g 281 (449)
T PRK07481 215 AAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG-----SWFGS-RGWGV--KPD-----IMCLA 281 (449)
T ss_pred EEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCc-----hhhHh-hhcCC--CCC-----EEEEe
Confidence 787777444444654 567779999999999999999999998752211 11111 11211 221 24569
Q ss_pred cccCCCCC-ceeEEEEecCCChhHHHHHHhh--------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 041151 273 KGYWGECG-QRGGYFEMTNIPPKTVDEIYKI--------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILE 343 (463)
Q Consensus 273 K~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (463)
|.+ + .| +.+|.++ +++++.+.+... ...+++.+++...++.+.|+ .++ .+++.+
T Consensus 282 Kgl-~-gG~~Pi~av~---~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~-----------~l~-~~~l~~ 344 (449)
T PRK07481 282 KGI-T-SGYVPLGATM---VNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLD-----------IVV-REDLPA 344 (449)
T ss_pred ecc-c-CCCcCceEEE---EcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHH-----------HHH-hhhHHH
Confidence 998 4 46 5899998 488888877531 22466778888888777763 222 123455
Q ss_pred HHHHHHHHHHHHhhcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCC---ChHHHHHHHHHhcCeEeeCCCCC
Q 041151 344 SLRRRARMMTDGFNSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV---PDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 344 ~~~~~~~~l~~~L~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
+.++.-+.|.+.|+++ |-+.-+...| .++.+.+..+... ....+ .....+...+.++||++.+..
T Consensus 345 ~~~~~g~~l~~~L~~l~~~~~~i~~vrG~G-lm~gi~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-- 416 (449)
T PRK07481 345 NAAKRGAYLLEGLQPLKERFELVGDVRGKG-LMLALDLVADKAT-----REPIDPSKGYANAVADVARENGVLVRPSG-- 416 (449)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeEEEeecc-eEEEEEecccccc-----cCCCCchhHHHHHHHHHHHhCCeEEEecC--
Confidence 5666666666666653 2122223334 3333333211000 00000 012233455677899998731
Q ss_pred CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 417 ~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
..+||+.. .+++|+++++++|.++++++
T Consensus 417 ------~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 417 ------TKIILSPPLVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred ------CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 14899977 69999999999999998764
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-10 Score=112.85 Aligned_cols=297 Identities=11% Similarity=0.031 Sum_probs=173.5
Q ss_pred cHHHHHHHHHHhhhcCCC-CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcE--EEcCCcHHHHHHHHHHHhc-CCCCE
Q 041151 82 PADAIARAKHYLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI--FLTDGASKGVMQTLNCVIR-GEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~~-~~gd~ 157 (463)
....++++.+.+.+..++ ...+.......++.+.+.+++.+..| .+++++ ++|+|+|+++..++.+... .++..
T Consensus 36 ~~~~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg--~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~ 113 (374)
T PLN03032 36 DYGELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWE--LEKDEYWGYITTCGTEGNLHGILVGREVFPDGI 113 (374)
T ss_pred ChHHHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhC--CCCccCCEEEeCchHHHHHHHHHHHHHhCCCcE
Confidence 445677777766542111 11121122346666677777666666 456666 9999999999988776421 24567
Q ss_pred EEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 158 VVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 158 Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
|+++ .|..+ ....+.+|+ ++|++++++. ..++.+|+++..+|+||.+-+ +++|+++
T Consensus 114 vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~-~~L~~~i~~~---~~~~~lvv~tagtt~tG~idp---i~eI~~i 186 (374)
T PLN03032 114 LYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDY-DDLERALAKN---RDKPAILNVNIGTTVKGAVDD---LDRILRI 186 (374)
T ss_pred EEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcH-HHHHHHHHHc---CCCCEEEEEEecCcCCccCCC---HHHHHHH
Confidence 7776 33333 455678999 9999999862 114677788889999999966 6777778
Q ss_pred hhhCC-----eEEEecccccccccC--CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC-CCCceeEEEEecCCC
Q 041151 221 CYQEN-----LVLLGDEVYQQNIYQ--DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG-ECGQRGGYFEMTNIP 292 (463)
Q Consensus 221 a~~~~-----~~vi~Deay~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~G~R~G~~~~~~~~ 292 (463)
|++++ +|+.+|.+|+.+... ...+...+ ... -.-+..|.+|.. + +.| +|.+++ .
T Consensus 187 ~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~-----------~~~-vDSis~s~HK~~-g~P~g--~G~ll~---r 248 (374)
T PLN03032 187 LKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF-----------RKP-IGSVSVSGHKFL-GCPMP--CGVALT---R 248 (374)
T ss_pred HHHhCCCCCCeeEEEEccchhhhhhccCCCcccCC-----------CcC-CcEEEECccccc-CCCcC--eEEEEE---E
Confidence 88885 699999999764321 01111111 100 124668899976 5 444 898886 4
Q ss_pred hhHHHHHHhhhh------hcccCChHHHH--HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 041151 293 PKTVDEIYKIAS------IALSPNVPAQI--FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 293 ~~~~~~l~~~~~------~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~ 364 (463)
.+.++.+..... .+...++.... .+...|+.. -.+-..++.++.-++.+++.+.|++. ++.+
T Consensus 249 ~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~---------G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~ 318 (374)
T PLN03032 249 KKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRK---------GYRGIKRDVQHCMRNAHYLKDRLTEA-GLTC 318 (374)
T ss_pred chhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHh---------CHHHHHHHHHHHHHHHHHHHHHHHhC-CCcE
Confidence 445554432111 12333333222 222222110 11223456666777888899999886 6654
Q ss_pred -ccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 365 -NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 365 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
..|.....+| +.|. .+. +. .|..+.+- ..++|+++. .+.+.++++++
T Consensus 319 ~~~p~~~~V~f---~~~~--------------~~~----~~-~~w~l~~~--------~~~~hi~vm~~~~~~~id~fi~ 368 (374)
T PLN03032 319 RLNELSSTVVF---ERPM--------------DEA----FI-KKWQLACE--------GDIAHVVVMPNVTVEKLDEFVE 368 (374)
T ss_pred EECCCceEEEE---cCCC--------------cHh----Hh-heeeeccc--------CCEEEEEECCCCCHHHHHHHHH
Confidence 4565554443 3221 111 22 35555531 126899998 45566777766
Q ss_pred HHHH
Q 041151 442 SFKK 445 (463)
Q Consensus 442 ~l~~ 445 (463)
.|++
T Consensus 369 dl~~ 372 (374)
T PLN03032 369 ELVE 372 (374)
T ss_pred HHhc
Confidence 6653
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-10 Score=105.27 Aligned_cols=284 Identities=15% Similarity=0.206 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee------cCCC
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW------KRQQ 170 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~------~~~~ 170 (463)
..+.+.+++|++ -|.+-+|+|+.++=+.+..+++ .+||.|+++ +|..+ ....
T Consensus 64 ~~F~~dlaeFlg--------~D~~R~t~GARe~KfavMhal~-~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pe 134 (382)
T COG1103 64 KDFLEDLAEFLG--------MDEVRVTAGAREAKFAVMHALC-KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPE 134 (382)
T ss_pred HHHHHHHHHHhC--------CceeeecccchhhHHHHHHHhc-cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCc
Confidence 466677888874 5788999999999999999997 999999997 67766 2345
Q ss_pred cccChHHHHHHHHHHHHhcC-CceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 171 IGVLIINDLQQSVAQARSKG-ITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~-~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
+.+++ +...+.+.+..+++ ..+.+.++++|..--|.+ .+..+++++|+++++.++..++|..... +.+..
T Consensus 135 y~i~~-e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl---~Dakkva~ic~e~gvPlllN~AYt~Grm-----pvs~k 205 (382)
T COG1103 135 YKITP-EGYAEVIEEVKDEGGDPPALALLTHVDGEYGNL---ADAKKVAKICREYGVPLLLNCAYTVGRM-----PVSGK 205 (382)
T ss_pred eEecH-HHHHHHHHHHHhccCCCceEEEEeccCCCcCCc---hhhHHHHHHHHHcCCceEeecceeeccc-----ccccc
Confidence 77899 99999888776654 457777888987777877 4588999999999999999999987443 34544
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhh--------cccCChHHHHHHHHhc
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI--------ALSPNVPAQIFMGLMV 321 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~q~~~~~~l 321 (463)
.+ . -.++++|=+|+++ +.-.+|.+.+ +.++.+.+-+.... -++++.-.. ....++
T Consensus 206 e~--------g---~DFiVgSGHKsmA--As~PiGvl~~---~eE~ae~V~r~Sg~~~~~KEvellGCT~rGa-pivTlm 268 (382)
T COG1103 206 EI--------G---ADFIVGSGHKSMA--ASAPIGVLAM---SEEWAEIVLRRSGRAFPKKEVELLGCTVRGA-PIVTLM 268 (382)
T ss_pred cc--------C---CCEEEecCccchh--ccCCeeEEee---hhHHHHHHHhhcccccccceeeeecccccCc-hHHHHH
Confidence 33 2 2368899999994 5667999986 78887776544310 122221111 111122
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc---cCCceeEEeeeccCChh-hHHHHhhcCCCChHH
Q 041151 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN---FTEGAMYSFPQIRLPPK-AIEAAKRAGKVPDVF 397 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~---~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 397 (463)
.+ +....+..++.-+ --++.+++.+.|+++.|+.-. +.+..+.. ++.|.- .+. +. .....-
T Consensus 269 AS-------fP~V~eRVkrWde-Ev~kaR~fv~elEkigg~~qlG~rPk~HdLm~---Fetp~f~eIa--kk--~~r~gy 333 (382)
T COG1103 269 AS-------FPHVVERVKRWDE-EVEKARWFVAELEKIGGVKQLGERPKNHDLMK---FETPVFHEIA--KK--HKRKGY 333 (382)
T ss_pred hc-------CHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHhCCCCcccceee---ecCchHHHHH--Hh--CcCCce
Confidence 11 1111221222222 233466788888888555432 22333322 344421 111 00 011234
Q ss_pred HHHHHHHhcCeEe-eCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 398 YCLRLLEATGIST-VPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 398 ~~~~ll~~~gI~v-~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
|+.+.|+++||.- .||. ..++.+|+- .+.|+++..+++++++++++
T Consensus 334 FlY~ELK~RgI~GI~~G~-------Tk~~K~svyGl~~Eqve~V~~afkeI~eky 381 (382)
T COG1103 334 FLYEELKKRGIHGIQPGQ-------TKYFKLSVYGLSWEQVEYVVDAFKEIAEKY 381 (382)
T ss_pred eeHHHHHhcCccccccCc-------eeEEEEEeecCCHHHHHHHHHHHHHHHHhc
Confidence 5667788888742 2321 247999988 99999999999999988764
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-10 Score=127.68 Aligned_cols=319 Identities=13% Similarity=0.073 Sum_probs=179.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+.+...... ..| . .+...++++.+.+... -..+.+++++++++|+..+++.... .....|+.
T Consensus 601 hp~v~~Ai~~q~~~l~~~-~~~----~-~~~~~elae~L~~~~p--~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~ii~ 672 (972)
T PRK06149 601 HPRLAAAAARQWSLLNTN-SRF----H-YAAVAEFSERLAALAP--DGLDTVFLVNSGSEANDLAIRLAWAASGRRDVVS 672 (972)
T ss_pred CHHHHHHHHHHHHhcccc-ccc----c-CHHHHHHHHHHHHhCC--CCcCEEEEeCCchHHHHHHHHHHHHhcCCCeEEE
Confidence 788999998887763111 112 1 2344455555543311 1235899999999999999984310 12234444
Q ss_pred c----cCcee---------------------------cCC----Ccc-cC-----hHHHHHHHHHHHHhcCCceeEEEEE
Q 041151 161 L----FHTTW---------------------------KRQ----QIG-VL-----IINDLQQSVAQARSKGITVRAMVII 199 (463)
Q Consensus 161 p----~g~~~---------------------------~~~----~~~-~d-----~~~~l~~~l~~~~~~~~~~~~i~l~ 199 (463)
. +|... ..+ .+. .+ . +.+++.++.....+.++.+|++.
T Consensus 673 ~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~iAavI~E 751 (972)
T PRK06149 673 VLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYV-RDVVAQLEELDASGRGLAGFICE 751 (972)
T ss_pred EeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHH-HHHHHHHHHHhhcCCceEEEEEc
Confidence 3 32111 000 011 01 2 34444444322222356676665
Q ss_pred C-CCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC
Q 041151 200 N-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278 (463)
Q Consensus 200 ~-p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 278 (463)
- +++--....+.+-+++|.++|++||+++|.||++..+.-.+ . .+... ..+|+ .. .| -+++|.+ |
T Consensus 752 pv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG-~---~~~a~-e~~gv--~P---Di--vt~gK~l-g- 817 (972)
T PRK06149 752 PVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLG-H---YFWGF-EQQGV--VP---DI--ITMAKGM-G- 817 (972)
T ss_pred ccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccC-c---cchhh-hhcCC--CC---CE--EEecccc-c-
Confidence 3 34433355677789999999999999999999996642211 1 11111 22221 11 13 3789999 5
Q ss_pred CCceeEEEEecCCChhHHHHHHhh--hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041151 279 CGQRGGYFEMTNIPPKTVDEIYKI--ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 279 ~G~R~G~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 356 (463)
.|+.+|.++ +++++.+.+... ...+++.++++..++.+.|+ .++ .+++.+..++.-++|.+.|
T Consensus 818 ~G~Pl~av~---~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~-----------~i~-~e~l~~~~~~~G~~l~~~L 882 (972)
T PRK06149 818 NGHPLGAVI---TRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLD-----------VLR-EEKLQENARRVGDHLKARL 882 (972)
T ss_pred CCeeeEEEE---EcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHH-----------HHH-hcCHHHHHHHHHHHHHHHH
Confidence 689999999 488888877641 11245678888888877763 222 1234555555556666666
Q ss_pred hcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 357 NSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 357 ~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
+++ |-+..+...|-+ +-+.+.-... +..........+...+.++||++.+... ..+.+||...
T Consensus 883 ~~l~~~~~~i~~vrG~Gl~-~gvel~~~~~-----~~~~~~~~~~~i~~~l~~~Gvl~~~~g~-----~~~vl~~~Ppl~ 951 (972)
T PRK06149 883 EALADRHPLIGAVHGMGLY-LGVELVRDRQ-----TLEPATEETAAICDRLLELGVIMQPTGD-----HLNILKIKPPLC 951 (972)
T ss_pred HHHHHhCCCeEEEeecceE-EEEEEecCcc-----cCCCChHHHHHHHHHHHhCCeEEeecCC-----CCCEEEEECCCc
Confidence 553 323333334433 3322210000 0000000122334556678999987421 2247999888
Q ss_pred CCcCcHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++++++++++|.+++.+
T Consensus 952 it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 952 LDRESADFFVDMLDRVLTE 970 (972)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999864
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-10 Score=115.66 Aligned_cols=313 Identities=11% Similarity=0.044 Sum_probs=183.0
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCC-----CCcEEEcCCcHHHHHHHHHHHhcC-----------CCCEEEEc--
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSD-----PELIFLTDGASKGVMQTLNCVIRG-----------EGDGVVLL-- 161 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-----~~~i~~t~G~~~al~~~~~~l~~~-----------~gd~Vlvp-- 161 (463)
...|....+..++.+.+-+|+.+..|.+-. ...=++++|+++++..++.+-- + |.-.|++.
T Consensus 159 ~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR-~~~~~~~g~~~~~~~vvy~S~~ 237 (539)
T PLN02590 159 GFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAAR-DRILKKVGKTLLPQLVVYGSDQ 237 (539)
T ss_pred cCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHH-HHHHhhhcccCCCCEEEEecCC
Confidence 344444456689999999999999887632 1334567888888877665531 1 11133333
Q ss_pred -----------cCc-----ee-cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 162 -----------FHT-----TW-KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 162 -----------~g~-----~~-~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
.|. +. +. ..+.+|+ +.|+++|.+..++|..+-+|+.+...-.||.+ +.+++|+++|
T Consensus 238 aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~-~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGai---Dpl~~Ia~i~ 313 (539)
T PLN02590 238 THSSFRKACLIGGIHEENIRLLKTDSSTNYGMPP-ESLEEAISHDLAKGFIPFFICATVGTTSSAAV---DPLVPLGNIA 313 (539)
T ss_pred chHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCH-HHHHHHHHHHHhcCCCcEEEEEEeCCCCCccc---CCHHHHHHHH
Confidence 333 22 22 3578999 99999998866666556666667788889998 4488899999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh-hHHHHHH
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-KTVDEIY 300 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~l~ 300 (463)
++|++|+.+|.+|+.+..- .+....+..++ ..- . =+...++|+++ ...-+|.+.+ .++ .+.+.+.
T Consensus 314 ~~~g~WlHVDaA~GG~al~----~~~~r~~~~Gi----e~A-D-Sit~D~HK~l~--~p~~cg~llv--r~~~~l~~a~~ 379 (539)
T PLN02590 314 KKYGIWLHVDAAYAGNACI----CPEYRKFIDGI----ENA-D-SFNMNAHKWLF--ANQTCSPLWV--KDRYSLIDALK 379 (539)
T ss_pred HHhCCeEEEecchhhhhhc----ChhhHHHhcCC----ccC-C-EEEECchhhcC--cCcCEEEEEe--cCHHHHHHHhh
Confidence 9999999999999876431 11222222222 111 1 25578999874 5667898887 343 3344332
Q ss_pred hhhh-----------------hcccCChHHHHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 301 KIAS-----------------IALSPNVPAQIFMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 301 ~~~~-----------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
.... .+...++-. .++..++. ++.+ .+-.+++.++.-+..+++.+.|++.|++
T Consensus 380 ~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~-raLklW~~--------lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~f 450 (539)
T PLN02590 380 TNPEYLEFKVSKKDTVVNYKDWQISLSRRF-RSLKLWMV--------LRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSF 450 (539)
T ss_pred cCHHHhCCcccccccCCCccccCCCCCCch-HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 1100 011111111 12222210 1111 2224556666777788999999888899
Q ss_pred ccccCCceeEEeeeccCChh---hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCcCcH
Q 041151 363 VCNFTEGAMYSFPQIRLPPK---AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAEEDM 436 (463)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~e~i 436 (463)
++..+..-..+.+++..+.. ..+. -...+ .+.+.+.|......... .+..++|+++. ++++++
T Consensus 451 el~~~~~l~iVcFr~~~~~~~~~~~~~-------ln~~l-~~~l~~~G~~~vs~t~~---~g~~~lR~~i~n~~T~~~dv 519 (539)
T PLN02590 451 EVVTTRYFSLVCFRLAPVDGDEDQCNE-------RNREL-LAAVNSTGKIFISHTAL---SGKFVLRFAVGAPLTEEKHV 519 (539)
T ss_pred EEecCCceEEEEEEecCCCCCHHHHHH-------HHHHH-HHHHHhCCCEEEEeeEE---CCEEEEEEEecCCCCCHHHH
Confidence 88765332233322221110 0000 01233 33344456444432322 34568999998 788999
Q ss_pred HHHHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDEFM 451 (463)
Q Consensus 437 ~~~~~~l~~~l~~~~ 451 (463)
+.+++.|.+...++.
T Consensus 520 ~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 520 TEAWQIIQKHASKFT 534 (539)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988766554
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.4e-12 Score=120.42 Aligned_cols=296 Identities=14% Similarity=0.107 Sum_probs=183.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------cCcee---cCCCcccChH
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------FHTTW---KRQQIGVLII 176 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------~g~~~---~~~~~~~d~~ 176 (463)
-+.++.+.+|+|++ .++.++++-| ..+....+.+++ .||.-|+-+ .|+++ ...-+..+-+
T Consensus 183 ~hkelE~l~A~f~g-------~e~a~vF~mG-f~TNs~~~p~l~-~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHNdm 253 (519)
T KOG1357|consen 183 EHKELEELVARFLG-------VEDAIVFSMG-FATNSMNIPSLL-GKGSLIISDELNHASLITGARLSGATTRVFRHNDM 253 (519)
T ss_pred HHHHHHHHHHHhcC-------CcceEEEecc-ccccccCcceee-cCCcceeeccccchheeccccccCceEEEEecCCH
Confidence 34577777777774 4567888777 666777888888 899888876 55555 2233444444
Q ss_pred HHHHHHHHHHHhcC-Cc----e-eEEEEE-CCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 177 NDLQQSVAQARSKG-IT----V-RAMVII-NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 177 ~~l~~~l~~~~~~~-~~----~-~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
..||+.|++.-..| |+ . |.+++. .-...-|.+.. +.++++++++|..+++.||+|+....+ ... .
T Consensus 254 ~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g-~tG----r 325 (519)
T KOG1357|consen 254 QGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMG-ATG----R 325 (519)
T ss_pred HHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccccEEEEeeccccccccC-CCC----c
Confidence 88888888753322 11 1 334333 55556666655 777888999999999999999976542 111 1
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh----hcccCChHHHHHHHHhcCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS----IALSPNVPAQIFMGLMVNPLK 325 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~q~~~~~~l~~~~ 325 (463)
.. .++++. +..+-.|.+++|+|+| |.+| ||+. +++++++.++.... .+..++++.|.....+ +...
T Consensus 326 gv-ce~~g~-d~~dvDImMGtftKSf-ga~G---Gyia---gsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl-~~i~ 395 (519)
T KOG1357|consen 326 GV-CEYFGV-DPEDVDIMMGTFTKSF-GAAG---GYIA---GSKELIDYLRTPSPSALYATSLSPPVAQQILTSV-KHIM 395 (519)
T ss_pred ce-eeccCC-Cchhheeecceehhhc-cccc---ceec---CcHHHHhhhccCCCceeecccCChHHHHHHHHHH-Hhhc
Confidence 11 112111 3333468999999998 6555 9998 79999999876643 2344555566554433 2211
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHh
Q 041151 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEA 405 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 405 (463)
..++ -...++..+++.+|..+++..|... |+-+...+.+..+-+-+-.|.+ -..+-++ |.+
T Consensus 396 G~dg-----t~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~k------------~~~f~r~-~l~ 456 (519)
T KOG1357|consen 396 GEDG-----TNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPAK------------IVAFSRE-MLE 456 (519)
T ss_pred CCCc-----ccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCccc------------ccHHHHH-HHh
Confidence 1111 1223346677899999999999887 8777765555333222233332 2333334 555
Q ss_pred cCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 406 TGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 406 ~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
++|.++-......+--+...|++.+ ++.|+++.+++.+..+-+.
T Consensus 457 ~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~ 502 (519)
T KOG1357|consen 457 RNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGDE 502 (519)
T ss_pred cCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhchh
Confidence 6777765443333222345788877 7889999999988776543
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-10 Score=127.80 Aligned_cols=320 Identities=14% Similarity=0.057 Sum_probs=184.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+.+...... ..|. .+.+.++|+.+.+... -.-+.+++++++++|+..+++.... .....|++
T Consensus 640 hp~v~~Ai~~q~~~l~~~-~~~~-----~~~~~~lAe~L~~~~p--~~~~~v~f~nSGsEA~e~AlklAr~~tGr~~ii~ 711 (1013)
T PRK06148 640 HPRVVAAAARQAARLNTN-TRYL-----HDAIVAYAERLTATLP--DGLTVAFFVNSGSEANSLALRLARAHTGQRDAIV 711 (1013)
T ss_pred CHHHHHHHHHHHhhcCCc-CCcC-----CHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEE
Confidence 788999998888763111 1221 2445556666654321 1225789999999999999987531 12345555
Q ss_pred c----cCcee---------------------------cC---CCccc-Ch------HHHHHHHHHHHHhcCCceeEEEEE
Q 041151 161 L----FHTTW---------------------------KR---QQIGV-LI------INDLQQSVAQARSKGITVRAMVII 199 (463)
Q Consensus 161 p----~g~~~---------------------------~~---~~~~~-d~------~~~l~~~l~~~~~~~~~~~~i~l~ 199 (463)
. +|... +. ..++. +. .+.+++.+......+.++.+|++.
T Consensus 712 ~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~E 791 (1013)
T PRK06148 712 LDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAE 791 (1013)
T ss_pred EcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEc
Confidence 3 22211 00 00111 11 023555554222222357777766
Q ss_pred C-CCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 200 N-PGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 200 ~-p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
- +.+ -|. ..+.+-++++.++|++||+++|.||++..+.-.+ . .+... ..+|+ .. =+.+++|.+ |
T Consensus 792 Pv~g~-gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG-~---~~~a~-e~~gv--~P-----Divt~gK~l-g 857 (1013)
T PRK06148 792 SIPSV-AGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVG-S---HWWAF-ETQGV--VP-----DIVTMGKPI-G 857 (1013)
T ss_pred CCcCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCC-C---cchhh-hhcCC--Cc-----ceeeecccc-c
Confidence 3 344 344 5577789999999999999999999998752211 1 01111 11211 11 125679999 5
Q ss_pred CCCceeEEEEecCCChhHHHHHHhh--hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 278 ECGQRGGYFEMTNIPPKTVDEIYKI--ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 278 ~~G~R~G~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
.|+.+|.++ +.+++.+.+..- ...+++.++++..++.+.|+ .++ .+++.+..++.-++|.+.
T Consensus 858 -gG~Plgav~---~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~-----------~i~-~e~l~~~~~~~G~~l~~~ 921 (1013)
T PRK06148 858 -NGHPMGAVV---TTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLD-----------IIE-DEDLQRNALEIGNYLLAG 921 (1013)
T ss_pred -CCcceEEEE---EcHHHHhhccCCCccccCCCCCHHHHHHHHHHHH-----------HHh-hccHHHHHHHHHHHHHHH
Confidence 689999999 488888877542 22467788888888887764 222 123555566666666666
Q ss_pred hhcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 356 FNSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 356 L~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
|+++ |-+.-+...| +++-+.+..+... ..........+...+.++||++.+...+ .+.+||...
T Consensus 922 L~~l~~~~~~i~~VrG~G-l~~gvel~~~~~~-----~~~~~~~~~~i~~~~~~~Gvl~~~~g~~-----~~vlr~~Ppl 990 (1013)
T PRK06148 922 LRELQDRFDIIGDVRGMG-LFLGIELVTDRKT-----KAPATAIARYVKNGARERGILIGTEGPH-----DNVLKIRPPL 990 (1013)
T ss_pred HHHHHHhCCCceEEeeec-eEEEEEecCCccc-----cCccHHHHHHHHHHHHhCCeEEeccCCC-----CCEEEEeCCc
Confidence 6553 2222233334 3333223211100 0000001223445566789999774222 246888888
Q ss_pred -CCcCcHHHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++++++++++|.++++++
T Consensus 991 ~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148 991 IFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred cCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999765
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-10 Score=115.08 Aligned_cols=328 Identities=12% Similarity=0.045 Sum_probs=175.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhc-CCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIR-GEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl 159 (463)
++.+.+++.+.+... ...++. .-..+.+.++|+.+.+........ ..+++++++++|+..+++.... .....|+
T Consensus 76 ~p~v~~Ai~~q~~~~---~~~~~~-~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii 151 (459)
T PRK06931 76 HPDVLQSIQDVLTSG---LPLHTL-DLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVI 151 (459)
T ss_pred CHHHHHHHHHHHhhh---cccccc-ccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEE
Confidence 678999998877641 111111 112356666777775432110001 1345668999999999986531 2234455
Q ss_pred Ec----cCcee-------------------------c-CCC----cc----cChHHHHHHHHHHHHh----cCCceeEEE
Q 041151 160 LL----FHTTW-------------------------K-RQQ----IG----VLIINDLQQSVAQARS----KGITVRAMV 197 (463)
Q Consensus 160 vp----~g~~~-------------------------~-~~~----~~----~d~~~~l~~~l~~~~~----~~~~~~~i~ 197 (463)
.- +|... + .+. ++ -+. +.+++.+.+... ...++.+|+
T Consensus 152 ~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iAAvI 230 (459)
T PRK06931 152 SFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGV-KALTYYFENFIEDVESGVRKPAAVI 230 (459)
T ss_pred EECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHH-HHHHHHHHHHHHhhhcCCCceEEEE
Confidence 43 22211 0 000 00 022 334333332211 112467777
Q ss_pred EECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccC
Q 041151 198 IINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYW 276 (463)
Q Consensus 198 l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 276 (463)
+.--..-.|. ..+.+-+++|.++|++||+++|.||+...+.-.+ .+... ..+|+ ..+ +-+++|.+
T Consensus 231 ~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG-----~~~a~-~~~gv--~PD-----ivt~gK~l- 296 (459)
T PRK06931 231 LEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTG-----KMFAF-EHAGI--EPD-----IIVMSKAV- 296 (459)
T ss_pred EccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCc-----hHHHh-hhcCC--CCC-----EEEecccc-
Confidence 7633332354 4577889999999999999999999998752111 11111 12221 121 24579999
Q ss_pred CCCCceeEEEEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 277 GECGQRGGYFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 277 g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
+ .|+.+|.++ ++++ ++.+.... ..+++.++++..++.+.|+ .+++ +.+.++.++.-++|.+.
T Consensus 297 ~-gG~Pi~av~---~~~~-~~~~~~~~~~~T~~gnpla~aaala~L~-----------~l~~-~~l~~~~~~~G~~l~~~ 359 (459)
T PRK06931 297 G-GGLPLAVLG---IKKE-FDAWQPGGHTGTFRGNQLAMATGLTTLK-----------ILKE-ENLAQNAAERGEWLKAQ 359 (459)
T ss_pred c-CCcceeeee---eHHH-HhhccCCCCCCCCCCCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHHHHHHH
Confidence 4 589999877 3554 45553222 2467788888888877764 2211 23444455555555555
Q ss_pred hhc----CCCcccccCCceeEEeeeccCChhhHHHHhhcCCC--ChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 356 FNS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV--PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 356 L~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
|++ .|.+.-+...|-+ .-+.+..+....+. ...... .-...+...+.++||.+.++..++ +.+|+..
T Consensus 360 L~~l~~~~~~i~~vrG~Glm-~giel~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~-----~~l~~~P 432 (459)
T PRK06931 360 LAELQKRYPCIGNVRGRGLM-IGIEIVDERQPADA-MGSYPADGELAAAIQKACFENGLLLERGGRNG-----NVVRLLP 432 (459)
T ss_pred HHHHHHhCCCeEeEecCceE-EEEEEccCcccccc-cccCCccHHHHHHHHHHHHHCCcEEeecCCCC-----CEEEEEC
Confidence 544 3322223334433 33223211000000 000000 011223445667899998743222 3688888
Q ss_pred c--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+ .+++++++++++|.++++++.|
T Consensus 433 pl~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 433 PLLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 8 8999999999999999987654
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-10 Score=116.23 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=117.8
Q ss_pred ceeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 192 TVRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
++.+|++.-...-.|. ..+.+.+++|.++|++||+++|.||++..+.-. + ..... ..+++ .. .|+ +
T Consensus 225 ~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRt-G----~~~a~-~~~gv--~P---Div--~ 291 (443)
T PRK08297 225 DIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLT-G----TAWAY-QQLGV--RP---DIV--A 291 (443)
T ss_pred cEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcc-c----hHHHH-HhcCC--CC---CEE--E
Confidence 6778777633322354 467888999999999999999999999875321 1 11111 12211 11 132 5
Q ss_pred CCcccCCCCCceeEEEEecCCChhHHHHHHh------hhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 271 VSKGYWGECGQRGGYFEMTNIPPKTVDEIYK------IASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 271 ~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
++|.+ + +|.+++ ..++.+.+.. ....+++.++++..++.+.|+ .++ .+++.++
T Consensus 292 ~gK~l-~-----~~a~l~---~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~l~-~~~l~~~ 350 (443)
T PRK08297 292 FGKKT-Q-----VCGIMA---GRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILE-----------VIE-EDGLVEN 350 (443)
T ss_pred ecccc-c-----ccceec---chHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHH-----------HHH-hcCHHHH
Confidence 89977 3 233332 3333222211 122466778888887777763 121 1234555
Q ss_pred HHHHHHHHHHHhhc----CCCcc-cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC
Q 041151 345 LRRRARMMTDGFNS----CRNVV-CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK 419 (463)
Q Consensus 345 ~~~~~~~l~~~L~~----~pg~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~ 419 (463)
.+++-+.+.+.|++ .|.+. .+...| .++.+ +++... ....++ ..+.++||++.|+.
T Consensus 351 ~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G-~~~~i--~~~~~~----------~~~~~~-~~l~~~Gvl~~~~~----- 411 (443)
T PRK08297 351 AARQGEYLLARLEELAAEFPAVVSNVRGRG-LMCAF--DLPTTA----------DRDEVI-RRLWEEGVLVLPCG----- 411 (443)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcceeeeccc-eEEEE--EecCHH----------HHHHHH-HHHHHCCEEEecCC-----
Confidence 55666666666654 34332 233444 44443 332210 023344 44557899998742
Q ss_pred CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 420 EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 420 ~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
...+|++.+ .+++++++++++|.++++++
T Consensus 412 --~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 412 --ERSIRFRPALTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred --CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence 125888665 88999999999999998764
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-10 Score=118.30 Aligned_cols=166 Identities=14% Similarity=0.127 Sum_probs=104.0
Q ss_pred ccCCCCCC-HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCcee
Q 041151 102 AYSDSRGI-PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHTTW 166 (463)
Q Consensus 102 ~Y~~~~g~-~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~~~ 166 (463)
....+.|. .+..+..|+.++ .....+++||++.++..++.+++ .+||.|+++ .|+++
T Consensus 168 dL~~~eG~i~eAq~~AA~~fg-------Ad~tyFlvNGTS~gn~a~i~a~~-~~Gd~VLvdRN~HKSv~hgaLiLsGa~P 239 (720)
T PRK13578 168 DLLIHEGAAKDAQKHAAKVFN-------ADKTYFVLNGTSASNKVVTNALL-TPGDLVLFDRNNHKSNHHGALIQAGATP 239 (720)
T ss_pred CCCCCChHHHHHHHHHHHHhC-------CCceEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHHcCCeE
Confidence 33334444 455555555554 22478899999999999999998 999999998 33333
Q ss_pred ----cC-CCc----ccChHHH-----HHHHHHHHH-h---cCCceeEEEEECCCCCCccCCCHHHHHHHHHH-hhhCCeE
Q 041151 167 ----KR-QQI----GVLIIND-----LQQSVAQAR-S---KGITVRAMVIINPGNPTGQCLSEANLREILRF-CYQENLV 227 (463)
Q Consensus 167 ----~~-~~~----~~d~~~~-----l~~~l~~~~-~---~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~-a~~~~~~ 227 (463)
+. +.+ +++. +. +++++++.. + .....++++|++|+. -|.++. +++|+++ ++.++ .
T Consensus 240 VYl~P~~n~~Gi~g~I~~-~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~~-~ 313 (720)
T PRK13578 240 VYLETARNPFGFIGGIDA-HCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLCD-Y 313 (720)
T ss_pred EEeeccccccCCcCCCCh-HHccHHHHHHHHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccCC-c
Confidence 21 223 3454 44 888887641 1 011259999999988 599987 6667776 56777 9
Q ss_pred EEeccccccc-ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 228 LLGDEVYQQN-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 228 vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
|++||||... .|.+..+..+...+ +.| .++..++++.|.+|++++++. .+++-+
T Consensus 314 llvDEAhgah~~F~p~~~~~p~~al--~~G---aD~p~i~v~QStHKtL~alTQ--aS~LHv 368 (720)
T PRK13578 314 ILFDSAWVGYEQFIPMMADCSPLLL--ELN---ENDPGIFVTQSVHKQQAGFSQ--TSQIHK 368 (720)
T ss_pred EEEeCcchhhhccCcccccCChhhh--hcC---CCCCCeEEEEChhhcchhhhh--Hhhhhc
Confidence 9999999654 34211000111111 111 223357999999999843333 455554
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-10 Score=111.99 Aligned_cols=296 Identities=15% Similarity=0.176 Sum_probs=179.2
Q ss_pred CcHHHHHHHHHHhhhcCC---C---CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC
Q 041151 81 FPADAIARAKHYLSLTSG---G---LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~---~---~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
+|+++++++.+.+.++.+ . ..+.++ -..++-+.+.+.+++..+++-+-+-+++..|++.++..+...++ .+
T Consensus 18 lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~--~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~-~~ 94 (365)
T PLN02452 18 LPANVLAKAQAELYNWEGSGMSVMEMSHRGK--EFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC-KP 94 (365)
T ss_pred CCHHHHHHHHHHHhcccccCccccccCCCch--HHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC-CC
Confidence 399999999877654321 1 111222 22455555555666665643222345566788999999999998 89
Q ss_pred CCEEEEc---------------cCcee--c--CCCc---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 155 GDGVVLL---------------FHTTW--K--RQQI---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 155 gd~Vlvp---------------~g~~~--~--~~~~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
|+++++- +|... . .... .+++ ++++. . ++.+.|.+++-...||+.+..
T Consensus 95 ~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~-~~~~~--~------~~~~~v~~~hnETstGv~~~~- 164 (365)
T PLN02452 95 GDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSV-SEWEL--T------PDAKFVHICANETIHGVEFKD- 164 (365)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCCh-HHcCC--C------CCCcEEEECCCCCCCcEecCc-
Confidence 9988775 43322 1 1111 3555 55421 1 268888889889999996432
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+.++. ++++|+|.+.+... .+..+.. ++ + .+.|..|.+ |++| +|.+++ +
T Consensus 165 -~~~i~------~~~lvVDa~Ss~g~-----~pidv~~-----------~~-v-~~~saqK~l-GP~G--l~~v~v---r 213 (365)
T PLN02452 165 -YPDVG------NVPLVADMSSNFLS-----KPVDVSK-----------YG-V-IYAGAQKNV-GPSG--VTIVII---R 213 (365)
T ss_pred -ccccC------CCeEEEECCccccC-----cccCHHH-----------cC-E-EEEeccccc-CCCC--eEEEEE---c
Confidence 33332 38999999987532 2233332 22 3 446999999 8999 688885 7
Q ss_pred hhHHHHHHhhh-------------hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Q 041151 293 PKTVDEIYKIA-------------SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 293 ~~~~~~l~~~~-------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~ 357 (463)
+++++++.... +...+++....+++..+|+ ...++ ++.+.++.+++.+++++.|+
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~----------~l~~~gGl~~~~~r~~~~a~~l~~~l~ 283 (365)
T PLN02452 214 KDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFE----------DLLAQGGLKAMEKRNIRKADLLYDAID 283 (365)
T ss_pred HHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 77776653211 1113455555566665553 12222 66788899999999999999
Q ss_pred cCCCccc--ccC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C
Q 041151 358 SCRNVVC--NFT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P 431 (463)
Q Consensus 358 ~~pg~~~--~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~ 431 (463)
+.+|+.. ..+ ...+.+. +.++.. ....++ .+.++++|+...+|..-- + .+|+|+- .
T Consensus 284 ~~~G~y~~~~~~~~rs~~~vs--F~~~~~----------~~~~~f-~~~~~~~g~~~~~G~r~~---g--g~R~s~yna~ 345 (365)
T PLN02452 284 ESNGFYVCPVEKSVRSLMNVP--FTLGGS----------ELEAEF-VKEAAKAGMVQLKGHRSV---G--GMRASIYNAM 345 (365)
T ss_pred hCCCcccCCCChHHhCCeEEE--EEcCCc----------hhHHHH-HHHHHHCCCcccCCcccc---C--ceEEECcCCC
Confidence 8777711 111 1333333 233321 113444 566889999999987432 2 2999998 5
Q ss_pred CcCcHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFND 448 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~ 448 (463)
+.++++.+++.++++-+
T Consensus 346 ~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 346 PLAGVEKLVAFMKDFQA 362 (365)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 66666665555555443
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-12 Score=121.06 Aligned_cols=190 Identities=14% Similarity=0.091 Sum_probs=130.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
.+.+++++.++... . ..|+......+|++.+++.++ .+..+++++++.+...++++++ .|++.|++.
T Consensus 8 ~~~m~~a~~~a~~g---d-~~Yg~D~~~~~l~~~i~~l~g--------~e~a~f~~sGT~An~~al~~~~-~~~~~vi~~ 74 (290)
T PF01212_consen 8 TPAMLEAMAAANVG---D-DAYGEDPTTARLEERIAELFG--------KEAALFVPSGTMANQLALRAHL-RPGESVICA 74 (290)
T ss_dssp -HHEEHHHHHTTSB-----CCTTSSHHHHHHHHHHHHHHT--------SSEEEEESSHHHHHHHHHHHHH-HTTEEEEEE
T ss_pred CHHHHHHHHccccC---C-cccCCChhHHHHHHHHHHHcC--------CCEEEEeCCCChHHHHHHHHHH-hcCCceecc
Confidence 56778888554433 2 268877677889999998875 4556788889999999999998 899999986
Q ss_pred ----------------cCcee---cCCC-cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHH
Q 041151 162 ----------------FHTTW---KRQQ-IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRF 220 (463)
Q Consensus 162 ----------------~g~~~---~~~~-~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~ 220 (463)
.|.++ +..+ ..+|+ +.|++.+.....-.+++++|+|++|+|.. |.++|.+++++|.++
T Consensus 75 ~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~-~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~ 153 (290)
T PF01212_consen 75 DTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTP-EDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISEL 153 (290)
T ss_dssp TTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-H-HHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHH
T ss_pred ccceeeeeccchhhHhcCcEEEECCCcccCCCCH-HHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHH
Confidence 55555 4445 88999 99999998742211368999999999964 889999999999999
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++|+.|..|-+=-.-.. .....++..+.... .++..|++|.+ ++++ |.+++ +++++++...
T Consensus 154 a~~~gl~lhmDGARl~~a~--~~~~~~~~e~~~~~---------D~v~~~~tK~~-g~~~---Gavl~--~~~~~i~~~~ 216 (290)
T PF01212_consen 154 AREHGLPLHMDGARLANAA--AALGVSLAEIAAGA---------DSVSFGGTKNG-GAPG---GAVLA--GNKEFIAKAR 216 (290)
T ss_dssp HHHHT-EEEEEETTHHHHH--CHHHHHHHHHHTTS---------SEEEEETTSTT--SSS---EEEEE--ESHHHHHHHH
T ss_pred HHhCceEEEEehhhHHHhh--hcccccHHHHhhhC---------CEEEEEEEccc-cccc---ceEEE--echHHHHHHH
Confidence 9999999999987321100 01112344443222 25678999987 5544 55554 6888766554
Q ss_pred hh
Q 041151 301 KI 302 (463)
Q Consensus 301 ~~ 302 (463)
..
T Consensus 217 ~~ 218 (290)
T PF01212_consen 217 RQ 218 (290)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.4e-09 Score=107.13 Aligned_cols=239 Identities=11% Similarity=0.110 Sum_probs=143.9
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCC---------CCC--CcEEEcCCcHHHHHHHHHHHhc---C-----------
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYP---------SDP--ELIFLTDGASKGVMQTLNCVIR---G----------- 153 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~---------~~~--~~i~~t~G~~~al~~~~~~l~~---~----------- 153 (463)
+...+..+....++.+.+.+|+.+..+.. -.+ ..=++|+|+++++..++.+--. .
T Consensus 117 n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~ 196 (522)
T TIGR03799 117 NLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVARE 196 (522)
T ss_pred CcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccc
Confidence 33444444456899999999998765311 011 2346788888888876655310 1
Q ss_pred -----------CCCEEEEc-------------cCc---ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE--C
Q 041151 154 -----------EGDGVVLL-------------FHT---TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVII--N 200 (463)
Q Consensus 154 -----------~gd~Vlvp-------------~g~---~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~--~ 200 (463)
++..|+++ .|. .+ .+.++.+|+ +.|++.+++..+.+ ++.+.++ .
T Consensus 197 gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~-~~L~~~i~~~~~~g--~~~~~vvata 273 (522)
T TIGR03799 197 GLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDV-DALRDKCAELAEQN--IKPLAIVGVA 273 (522)
T ss_pred cchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCH-HHHHHHHHHHHHCC--CCcEEEEEEe
Confidence 12356665 343 22 455688999 99999998654443 3444444 6
Q ss_pred CCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 201 PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 201 p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
.++.||.+-+ +++|+++|+++|+|+.+|.+|+.... . ......+..++ .. -..+..|.+|++++..|
T Consensus 274 Gtt~tGaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~-~---~~~~r~~l~gl----e~--aDSit~d~HK~l~~P~g 340 (522)
T TIGR03799 274 GTTETGNIDP---LDEMADIAQELGCHFHVDAAWGGATL-L---SNTYRHLLKGI----ER--ADSVTIDAHKQLYVPMG 340 (522)
T ss_pred cCcCCCCcCC---HHHHHHHHHHcCCeEEEEchhhhHHH-h---CHHHHHHhcCc----hh--CCEEEEChhhcCCcCcc
Confidence 6779999977 77888889999999999999986432 0 11111221211 11 12577999998755545
Q ss_pred ceeEEEEecCCChhHHHHHHhhhh------------hcccCChHHHH-HHHHhcCCCCCCCchHHHH-HHHHHHHHHHHH
Q 041151 281 QRGGYFEMTNIPPKTVDEIYKIAS------------IALSPNVPAQI-FMGLMVNPLKPGDISYEQF-VRESKGILESLR 346 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~~~l~~~~~------------~~~~~~~~~q~-~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 346 (463)
+|++++ .+++..+.+..... .++..++.... .+...++ .+ ..-.+.+.++..
T Consensus 341 --~G~llv--r~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~----------~lG~~G~~~ii~~~~ 406 (522)
T TIGR03799 341 --AGMVLF--KDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLH----------IIGRKGYELLIDQSI 406 (522)
T ss_pred --cEEEEE--eCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHH----------HHhHHHHHHHHHHHH
Confidence 898887 45666555533100 01111222111 1222221 11 122556777778
Q ss_pred HHHHHHHHHhhcCCCcccccC
Q 041151 347 RRARMMTDGFNSCRNVVCNFT 367 (463)
Q Consensus 347 ~~~~~l~~~L~~~pg~~~~~~ 367 (463)
+..+++.+.|++.|++++..+
T Consensus 407 ~la~~l~~~L~~~~~~el~~~ 427 (522)
T TIGR03799 407 EKAKYFADLIQQQPDFELVTE 427 (522)
T ss_pred HHHHHHHHHHhhCCCeEEecC
Confidence 888999999999889988754
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.4e-10 Score=105.50 Aligned_cols=314 Identities=14% Similarity=0.117 Sum_probs=186.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--CCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--GEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~Vl 159 (463)
.+++.+++.+.+.........|.... ..++-+++++.+- -+-..++++|++++|.++++..... +.-|.|.
T Consensus 68 hP~v~~a~~kQl~~l~H~t~~~~~~p-i~~~Ae~L~s~~P------~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa 140 (442)
T KOG1404|consen 68 HPDVVAAAVKQLKKLYHTTSGYLNPP-IHDLAEALVSKLP------GDLKVVFFVNSGSEANELALKMARLYTGNLDIIA 140 (442)
T ss_pred ChHHHHHHHHhhhhhEEeeccccCCc-HHHHHHHHHHhCC------CCceEEEEecCCchHHHHHHHHHHHhcCCceEEE
Confidence 78899999877765333445555433 4577777777763 2334688999999999999887531 3334444
Q ss_pred Ec---cCcee---------------------------c---CCCcccC----hHHHHHHHHHHHH-hcCCc-eeEEEEEC
Q 041151 160 LL---FHTTW---------------------------K---RQQIGVL----IINDLQQSVAQAR-SKGIT-VRAMVIIN 200 (463)
Q Consensus 160 vp---~g~~~---------------------------~---~~~~~~d----~~~~l~~~l~~~~-~~~~~-~~~i~l~~ 200 (463)
.- +|... | ...|+-+ ..+.+.+.+.+.- ..++. +.+.+...
T Consensus 141 ~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEt 220 (442)
T KOG1404|consen 141 RRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAET 220 (442)
T ss_pred eeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeeh
Confidence 43 22111 0 0011111 1133333333221 11223 34444444
Q ss_pred CCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC
Q 041151 201 PGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC 279 (463)
Q Consensus 201 p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~ 279 (463)
-.-.-|++ +++--+++..++|+++|.+.|.||+...+.-. .++... ...+-+=-|-|++|.+ | .
T Consensus 221 IqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRt-----G~~wgf--------e~h~v~PDIvTmAKgi-G-n 285 (442)
T KOG1404|consen 221 IQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRT-----GHMWGF--------ESHGVVPDIVTMAKGI-G-N 285 (442)
T ss_pred hccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccc-----cccccc--------cccCCCccHHHHHhhc-c-C
Confidence 45544544 44557999999999999999999999885331 133332 2222333457999999 5 7
Q ss_pred CceeEEEEecCCChhHHHHHHhhh-h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 280 GQRGGYFEMTNIPPKTVDEIYKIA-S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 280 G~R~G~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
|+.+|.+++ ++++.+.+.+.. . .+++.++++..++.+.|+ .++ .+++.+.-++.-.+|.+.|.
T Consensus 286 G~Pl~AVvt---t~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~-----------Vik-ee~LqE~aa~vG~yl~~~l~ 350 (442)
T KOG1404|consen 286 GFPLGAVVT---TPEIADVLNQKSSHFNTYGGNPVACAVGLAVLK-----------VIK-EENLQENAAEVGSYLLEKLA 350 (442)
T ss_pred CCcceeeec---CHHHHHHHHhccccccccCCCchhHHHHHHHHH-----------HHH-HHhHHHHHHHHHHHHHHHHH
Confidence 899999995 899999998776 3 578888888888888874 222 33455555666667777776
Q ss_pred cC-CCcccc---cCCceeEEeeeccCChhhHHHHhhcCC-CChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 358 SC-RNVVCN---FTEGAMYSFPQIRLPPKAIEAAKRAGK-VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 358 ~~-pg~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
++ .+..++ ...| +++ .+++-... .+.... ........+.++++|++|--|..+|. .+||+..
T Consensus 351 ~l~d~h~iIGdVRG~G-Lm~--GvE~V~dk---~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~-----vfriaPPlc 419 (442)
T KOG1404|consen 351 ALKDKHPIIGDVRGRG-LML--GVELVSDK---SEPKPPATAEGAVIGEQCKELGVLVGKGGIHGN-----VFRIAPPLC 419 (442)
T ss_pred HHhhcCCceeecccce-eEE--EEEEeccc---CCCCCcchHHHHHHHHHHHHhCeeeecccccce-----EEEecCCee
Confidence 54 122222 2222 222 23321100 000000 01234455778999999977776664 6999998
Q ss_pred CCcCcHHHHHHHH
Q 041151 431 PAEEDMPAIMESF 443 (463)
Q Consensus 431 ~~~e~i~~~~~~l 443 (463)
.+.+|++.+++..
T Consensus 420 iT~edi~f~~~~~ 432 (442)
T KOG1404|consen 420 ITKEDIDFAVEYF 432 (442)
T ss_pred ccHHHHHHHHHHH
Confidence 7889996666655
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-10 Score=116.75 Aligned_cols=300 Identities=11% Similarity=0.043 Sum_probs=163.5
Q ss_pred CCCCCC-HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---
Q 041151 104 SDSRGI-PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW--- 166 (463)
Q Consensus 104 ~~~~g~-~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~--- 166 (463)
..+.|. .+..+..|+.++ .....+++||++.++..++.+++ .+||.|+++ .|+++
T Consensus 191 l~~~G~i~eAe~~AA~~fg-------Ad~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~haLilsga~PVYl 262 (714)
T PRK15400 191 LDHSGPHKEAEEYIARVFN-------ADRSYMVTNGTSTANKIVGMYSA-PAGSTVLIDRNCHKSLTHLMMMSDVTPIYF 262 (714)
T ss_pred CCCChHHHHHHHHHHHHhC-------CCcEEEEeCchHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeEEEe
Confidence 334443 455555555553 22478899999999999999998 999999998 55555
Q ss_pred -cC-CCc----ccC-----hHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccc
Q 041151 167 -KR-QQI----GVL-----IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235 (463)
Q Consensus 167 -~~-~~~----~~d-----~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~ 235 (463)
+. +.+ +++ . +.+++.++..... +++++++|++|+. -|.++. +++|+++|..++ |++||||.
T Consensus 263 ~P~rn~~Gi~g~I~~~~~~~-e~i~~~i~~~p~a-k~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~~--ilvDEAwg 334 (714)
T PRK15400 263 RPTRNAYGILGGIPQSEFQH-ATIAKRVKETPNA-TWPVHAVITNSTY-DGLLYN---TDFIKKTLDVKS--IHFDSAWV 334 (714)
T ss_pred cccccccCCccCCCccccCH-HHHHHHHHhCccc-cCccEEEEECCCC-ccEecC---HHHHHHHhCCCC--EEEEccch
Confidence 22 222 334 7 8899988764321 1344788999965 699988 566777777776 68999997
Q ss_pred cc-ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhhhh--cccCCh
Q 041151 236 QN-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIASI--ALSPNV 311 (463)
Q Consensus 236 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 311 (463)
.. .|.+..+..+.... +- ++++.++++.|.+|+++ ++.- +++-+ .+.- -.+++...... +.+++-
T Consensus 335 ah~~F~p~~~~~sam~~--ga----~~~~~i~vtQStHKtL~---alTQaS~LHv-kg~v-d~~~~n~a~~m~~STSPsY 403 (714)
T PRK15400 335 PYTNFSPIYEGKCGMSG--GR----VEGKVIYETQSTHKLLA---AFSQASMIHV-KGDV-NEETFNEAYMMHTTTSPHY 403 (714)
T ss_pred hhhccCcccCCcChhhc--CC----CCCCceEEEEchhhccc---chhHHhHHHH-cCCC-CHHHHHHHHHHHcCCCcHH
Confidence 54 34221111222111 10 22235799999999984 4443 34333 1111 12344444331 223332
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCC------cccccCCc--------------
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCRN------VVCNFTEG-------------- 369 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~pg------~~~~~~~g-------------- 369 (463)
+..+.+..+. .+++ .-+++.+...+....+++.+.++++ +.+..++.
T Consensus 404 ~l~ASLD~a~-----------~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~ 472 (714)
T PRK15400 404 GIVASTETAA-----------AMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDST 472 (714)
T ss_pred HHHHHHHHHH-----------HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCcccc
Confidence 2222221111 1111 1233444455555556666655544 33332220
Q ss_pred --e-------eEEe--ee--ccCCh-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCc
Q 041151 370 --A-------MYSF--PQ--IRLPP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEED 435 (463)
Q Consensus 370 --~-------~~~~--~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~ 435 (463)
| ++.+ ++ +..|. +.-....+.|+ ....+.+.|.++||.+.-.+.+.. .+=++++.+.++
T Consensus 473 whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gi--pg~~v~~~L~e~gI~~E~~d~~~i-----Lfl~s~g~t~~~ 545 (714)
T PRK15400 473 WHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGI--PASIVAKYLDEHGIVVEKTGPYNL-----LFLFSIGIDKTK 545 (714)
T ss_pred ccCcccccccccccCCceEEEEeCCCCCCccccccCC--CHHHHHHHHHHcCCEEEecCCCeE-----EEEeCCCCCHHH
Confidence 0 0100 00 00111 00000000111 344566778999999987554443 356666688899
Q ss_pred HHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFND 448 (463)
Q Consensus 436 i~~~~~~l~~~l~ 448 (463)
++.++++|.++-+
T Consensus 546 ~~~L~~aL~~f~~ 558 (714)
T PRK15400 546 ALSLLRALTDFKR 558 (714)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887733
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.7e-10 Score=109.75 Aligned_cols=321 Identities=12% Similarity=0.057 Sum_probs=185.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-----c-CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-----R-GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----~-~~g 155 (463)
.+++.+++.+.+...+.. +.+. ..+.+ -..+|+.+-+.-.- -+-+.|++|+|++++++.+++... + +|.
T Consensus 62 ~~~i~~Ai~~Q~~~l~~~-~~~~-~t~~P--a~~LA~~L~~~aP~-~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~ 136 (449)
T COG0161 62 RPEIAEAIKKQLDKLPHV-MFGG-FTHEP--AIELAEKLAELAPE-GGLDHVFFTDSGSEAVETALKMALQYWRARGQPQ 136 (449)
T ss_pred CHHHHHHHHHHHHhCCch-hhcc-cCCch--HHHHHHHHHHhCCC-CCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCc
Confidence 678889998888873211 1111 11222 33444444332000 113589999999999999999764 1 344
Q ss_pred CEEEEc-----cCcee----------------------------cC-------CCcc----cChHHHHHHHHHHHHhcCC
Q 041151 156 DGVVLL-----FHTTW----------------------------KR-------QQIG----VLIINDLQQSVAQARSKGI 191 (463)
Q Consensus 156 d~Vlvp-----~g~~~----------------------------~~-------~~~~----~d~~~~l~~~l~~~~~~~~ 191 (463)
.+.++. +|..+ +. ..+. -.. ++|++.+..... .
T Consensus 137 r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a-~~le~~i~~~g~--~ 213 (449)
T COG0161 137 RKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAA-DELEALILEHGP--E 213 (449)
T ss_pred ceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHH-HHHHHHHHhcCc--c
Confidence 443443 11111 11 0111 124 667776665421 2
Q ss_pred ceeEEEEECCCCC-CccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 192 TVRAMVIINPGNP-TGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 192 ~~~~i~l~~p~NP-tG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
++-++++.--..- .|..+ ++.-++++.++|++||+++|.||+-..|.-+ + .-++. .+.|+ .. =+-
T Consensus 214 ~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRT-G---~~FA~--e~~gi--~P-----Di~ 280 (449)
T COG0161 214 TIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRT-G---KMFAC--EHAGI--VP-----DIL 280 (449)
T ss_pred cEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcC-c---hhhhh--hhcCC--CC-----Cee
Confidence 5666655533333 67555 4456999999999999999999998875321 1 12222 22221 12 235
Q ss_pred cCCcccCCCCCceeEEEEecCCChhHHHHHHhh------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHH
Q 041151 270 TVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILE 343 (463)
Q Consensus 270 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (463)
+++|.+ .-.=+.+|.+++ +.++.+.+..- .+.+++.++++.+++.+.|+ ..+ .+.+.+
T Consensus 281 ~~aKGL-T~GY~Pl~a~l~---~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~-----------i~e-~e~l~~ 344 (449)
T COG0161 281 CLAKGL-TGGYLPLSAVLT---SDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLD-----------ILE-EEDLLE 344 (449)
T ss_pred eecccc-cccchhhHhHhh---hHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHH-----------HHH-hcCHHH
Confidence 678987 434456777764 78888888663 22567888888888877763 222 234566
Q ss_pred HHHHHHHHHHHHhhc-CC---CcccccCCceeEEeeeccCChhhHHHHhhcCC-CChHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 344 SLRRRARMMTDGFNS-CR---NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK-VPDVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 344 ~~~~~~~~l~~~L~~-~p---g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
+.++.-.++.+.|++ ++ .+.-+. .-|++.-+.+..+.. +...+ ......+...+.++|+.++|. |.
T Consensus 345 ~~~~~~~~l~~~L~~~l~~~p~VgdVR-~~Gli~~iElv~d~~-----t~~~f~~~~~~~~~~~~~e~Gl~iRp~---g~ 415 (449)
T COG0161 345 RVAEIGAYLQAGLQAALADHPLVGDVR-GLGLIGAIELVADKA-----TKTPFEARVGARVRAAALERGLLIRPL---GD 415 (449)
T ss_pred HHHHHHHHHHHHHHHhcccCCcEEEee-ccceEEEEEEecccc-----cccchhhhHHHHHHHHHHHCCeEEeec---CC
Confidence 666777777777776 32 222222 233444433321111 00000 012445667788899999995 21
Q ss_pred CCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 419 ~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
.+=++.. .+++|++++++++++.+++..+.
T Consensus 416 -----~i~~~PPliit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 416 -----VIYLMPPLIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred -----EEEEcCCccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3555655 78999999999999999887654
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-09 Score=108.93 Aligned_cols=199 Identities=12% Similarity=0.140 Sum_probs=112.0
Q ss_pred ceeEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 192 TVRAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
++.+|++.-...-.|.+ .+.+.+++|.++|++||+++|+||++..+..+ + ..... ..+++ .. .++ +
T Consensus 218 ~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~Grt-G----~~~a~-~~~gv--~P---Di~--~ 284 (431)
T TIGR03251 218 DIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLT-G----TAWAY-QQLGV--QP---DIV--A 284 (431)
T ss_pred cEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCcc-c----hHHHH-HhcCC--CC---CEE--E
Confidence 67888777444445654 57788999999999999999999999975331 1 11111 11211 11 132 4
Q ss_pred CCcccCCCCCceeEEEEecCCChhHHHHHH---h---hhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 271 VSKGYWGECGQRGGYFEMTNIPPKTVDEIY---K---IASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 271 ~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~---~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
++|.+ +. .|++. .+++.+... . ....+++.+++...++.+.|+ .+++ ..+.++
T Consensus 285 ~gK~~---~~--~g~~~----~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~l~~-~~l~~~ 343 (431)
T TIGR03251 285 FGKKT---QV--CGIMA----GRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILE-----------IIEE-ERLVDN 343 (431)
T ss_pred ecccC---cc--ceEEe----cchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHH-----------HHHh-cCHHHH
Confidence 78975 22 46665 333222111 1 112356677888777777763 1111 123334
Q ss_pred HHHHHHHHHHHhhc----CCCc-ccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC
Q 041151 345 LRRRARMMTDGFNS----CRNV-VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK 419 (463)
Q Consensus 345 ~~~~~~~l~~~L~~----~pg~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~ 419 (463)
.+++-+.+.+.|++ .|++ ......| .+..+ +++.. +....+...|.++||++.|..
T Consensus 344 ~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G-~~~~i--~~~~~-----------~~~~~~~~~l~~~Gvl~~~~g----- 404 (431)
T TIGR03251 344 ARVQGAHLLARLHELAAEFPHLVSNPRGRG-LMCAF--DLPST-----------ADRDEVIRQLYREGVLLLGCG----- 404 (431)
T ss_pred HHHHHHHHHHHHHHHHHhCccceecccccc-eeEEE--EeCCH-----------HHHHHHHHHHHhCCeEEecCC-----
Confidence 44444445444433 3322 2223333 44342 33321 022223445668899997732
Q ss_pred CCCcEEEEEec--CCcCcHHHHHHHHHH
Q 041151 420 EGIFHLRTTIL--PAEEDMPAIMESFKK 445 (463)
Q Consensus 420 ~~~~~lRis~~--~~~e~i~~~~~~l~~ 445 (463)
...+|++.+ .+++|+++++++|.+
T Consensus 405 --~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 405 --ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred --CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 135888887 889999999999875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.6e-10 Score=112.80 Aligned_cols=214 Identities=14% Similarity=0.142 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhc
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+.+++.+... +.++.+|++.-...-.|.+. +.+-+++|.++|++||+++|.||++..+... + .+... ..+
T Consensus 239 ~~l~~~l~~~---~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrt-G----~~fa~-e~~ 309 (464)
T TIGR00699 239 EEVEDLIKKW---HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGAT-G----KFWAH-EHW 309 (464)
T ss_pred HHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCC-c----chhHH-Hhc
Confidence 5566666531 12578877764444457666 6778999999999999999999999765321 1 11111 122
Q ss_pred CCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh-hhhcccCChHHHHHHHHhcCCCCCCCchHHHH
Q 041151 256 GLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQF 334 (463)
Q Consensus 256 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 334 (463)
|+ ... . -+.+++|.+ |..| +++ +.+ ........ ...+++.+++...++.+.|+ .
T Consensus 310 gv--~~~-P--Di~t~gK~l-g~gG----~~~---~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~-----------~ 364 (464)
T TIGR00699 310 NL--DDP-P--DMVTFSKKF-QTAG----YFF---HDP-AFRPNKPYRQFNTWMGDPSRALILREIIQ-----------E 364 (464)
T ss_pred CC--CCC-C--CEEEehhhh-ccCC----ccc---cch-hccCCCCcccccCCCCCHHHHHHHHHHHH-----------H
Confidence 21 100 1 126789988 4223 343 232 21111111 22466777888777776653 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC----CC-ccccc--CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC
Q 041151 335 VRESKGILESLRRRARMMTDGFNSC----RN-VVCNF--TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG 407 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~L~~~----pg-~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 407 (463)
++ .+++.++.+++-+++.+.|+++ |. +.-+. .. |+++- ++++... ....+...+.++|
T Consensus 365 l~-~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~-Glm~g--ie~~~~~-----------~~~~i~~~~~~~G 429 (464)
T TIGR00699 365 IK-RKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGR-GTFIA--WDTPDEA-----------KRDKLLKKARNNG 429 (464)
T ss_pred HH-hcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCe-EEEEE--EecCCHH-----------HHHHHHHHHHHCC
Confidence 21 1234445555555666666543 31 22222 33 33333 3443210 1223445566789
Q ss_pred eEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 408 ISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 408 I~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
|++.+. +.+.+||+.. .+++|++.++++|.++
T Consensus 430 vl~~~~-------g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 430 VNIGGC-------GVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred cEEecC-------CCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999763 2247999998 8999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.1e-09 Score=114.93 Aligned_cols=304 Identities=13% Similarity=0.120 Sum_probs=170.4
Q ss_pred CCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEE-cCCcHHHHHHHH---HHHhcCCCC----EEEEc-------
Q 041151 100 LGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFL-TDGASKGVMQTL---NCVIRGEGD----GVVLL------- 161 (463)
Q Consensus 100 ~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~---~~l~~~~gd----~Vlvp------- 161 (463)
.+.|.| .+|+.++...+.+++.+..|.+ ++-+ .+|++++....+ +.+...+|+ +|++|
T Consensus 528 ~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d----~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~sn 603 (954)
T PRK05367 528 LHPFAPAEQAAGYRELIDQLEAWLAEITGYD----AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTN 603 (954)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHCCC----CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhh
Confidence 455555 4567788888888888877753 3444 445655553333 322124565 58887
Q ss_pred ------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|.++ .+....+|+ +.|++.+.+. +.++.+|++++|++- |.+. +++++|+++|+++|+++++|
T Consensus 604 p~sa~~~G~~vv~v~~d~~G~iD~-~~L~~~i~~~---~~~la~V~it~pst~-G~~e--~~I~eI~~i~h~~G~~v~VD 676 (954)
T PRK05367 604 PASAVMAGMKVVVVACDENGNIDL-DDLRAKAEEH---ADNLAAIMITYPSTH-GVFE--ETIREICEIVHEHGGQVYLD 676 (954)
T ss_pred HHHHHHCCCEEEEECCCCCCCcCH-HHHHHHHhcc---CCCeEEEEEEcCCCC-eeec--CCHHHHHHHHHHcCCEEEEE
Confidence 55655 334578999 9999998752 115788888898876 4431 23888899999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC---CceeEEEEecCCChhHHHHHHhhh-----
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC---GQRGGYFEMTNIPPKTVDEIYKIA----- 303 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~---G~R~G~~~~~~~~~~~~~~l~~~~----- 303 (463)
.++...... ..+.. ++ +. .++..|.+|+|+... |=-+|.+.+ .+.+...+-...
T Consensus 677 gA~~~al~~----l~~pg----~~----GA---Di~~~s~HK~f~~P~G~GGPg~G~l~v---r~~l~p~lpg~~v~~~~ 738 (954)
T PRK05367 677 GANMNAQVG----LARPG----DI----GA---DVSHLNLHKTFCIPHGGGGPGVGPIGV---KAHLAPFLPGHPVQIAG 738 (954)
T ss_pred CcChhhccC----CCChh----hc----CC---CEEEecCcccCCCCcCCCCCceEEEee---cccccccCCCCccCcCC
Confidence 999643221 11111 11 22 378899999973222 222788875 333332221110
Q ss_pred --h--hcccCChHHHHHHHHhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeE--Eee
Q 041151 304 --S--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMY--SFP 375 (463)
Q Consensus 304 --~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~--~~~ 375 (463)
. .....+.+.|....... ..|...+- -+++..+.--.+.+++.+.|.+...+.+..+.+..+ ..+
T Consensus 739 ~~~~~g~v~ta~~g~al~~~~a-------~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~ 811 (954)
T PRK05367 739 GETGIGAVSAAPFGSASILPIS-------WMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYPVLYTGANGRVAHECIL 811 (954)
T ss_pred CCCCcCcchhHHHHHHHHHHHH-------HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCCCCCcccceEE
Confidence 0 01111222221111100 11211111 122333333377888898887642343333322111 122
Q ss_pred ec-cCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 376 QI-RLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 376 ~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
++ +++.. .+. +..+ +.+.|.++|+.... ..|.. .+.+||++. .+.+||++++++|+++..+..+
T Consensus 812 ~~~~~~~~-------~g~-~~~d-i~krL~d~G~~~~t-~~~pv---~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 812 DLRPLKES-------TGI-TVDD-IAKRLIDYGFHAPT-MSFPV---AGTLMVEPTESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred Eeeccccc-------CCC-CHHH-HHHHHHHCCCeEee-cCCcc---CCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 22 22211 011 2344 44556889998655 33433 347899888 8889999999999999888766
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.2e-09 Score=112.55 Aligned_cols=304 Identities=12% Similarity=0.108 Sum_probs=173.8
Q ss_pred CCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---c----CCCCEEEEc--------
Q 041151 100 LGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---R----GEGDGVVLL-------- 161 (463)
Q Consensus 100 ~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~----~~gd~Vlvp-------- 161 (463)
.+.|.| .+|+..+..++..|+.+..|.+ +.-+..+|++++-...+.++- . ...++|++|
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd---~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP 592 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD---AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP 592 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC---CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH
Confidence 456665 4677888888888888887865 233344455554443333331 1 123578887
Q ss_pred -----cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ .+..+.+|+ ++|++.+++. +.++++|++++|+| +|.+-+ .+++|+++|+++|.++++|-
T Consensus 593 asa~~~G~~Vv~V~~d~~G~iDl-e~L~~~i~~~---~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~G~~v~VDg 665 (939)
T TIGR00461 593 ASAAMAGMQVVPVNCDQDGNIDL-VDLKNKAEQH---GDELAAVMVTYPST-HGVFEP--TIQHACDIVHSFGGQVYLDG 665 (939)
T ss_pred HHHHHCCCEEEEeccCCCCCcCH-HHHHHHHhhc---CCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHcCCEEEEEe
Confidence 45555 345788999 9999999751 22799999999999 788743 38889999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccC-----CCCCceeEEEEecCCChhHHHHHHh--h---
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYW-----GECGQRGGYFEMTNIPPKTVDEIYK--I--- 302 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-----g~~G~R~G~~~~~~~~~~~~~~l~~--~--- 302 (463)
++..... . ..+. .+.+-.|+++|.+|+|+ |.|| +|.+.+ .+++...+-. +
T Consensus 666 Aq~~al~-~---l~~P-----------g~~GaDi~~~s~HKtf~~P~G~GGPg--~G~i~v---r~~L~~~lPg~~v~~t 725 (939)
T TIGR00461 666 ANMNAQV-G---LTSP-----------GDLGADVCHLNLHKTFCIPHGGGGPG--MGPIGV---KSHLIPFLPKHDVVSM 725 (939)
T ss_pred cChhhCC-C---CCCc-----------cccCCCEEEecCCccCCCCCCCCCCC--eEEEEE---hhhchhhcCCCccccc
Confidence 9865211 0 1111 11122488899999886 4444 799986 3333322210 0
Q ss_pred -------hhhcccCC-hHHH----HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC--C
Q 041151 303 -------ASIALSPN-VPAQ----IFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT--E 368 (463)
Q Consensus 303 -------~~~~~~~~-~~~q----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~--~ 368 (463)
+......+ ...+ ..+..++... -.+-+++..+.--.+.+++.+.|.+ ++.+..+ .
T Consensus 726 ~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~l---------G~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~ 794 (939)
T TIGR00461 726 ITGIGGSKSIGSVSAAPYGSASILPISWMYIKMM---------GNEGLPKASVVAILNANYMATRLKD--HYPILFVGTL 794 (939)
T ss_pred ccCCCCccccccccccccCcHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCC
Confidence 00000000 1111 1111111100 0111344455556678899999987 3444332 2
Q ss_pred ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+.++-=+.++++.. . +..+. +..+ +.+.|.++|+..-. ..|.. .+.-.+|.+-..+.+||+++++.+.++.+
T Consensus 795 ~~~~hEfv~~~~~~--~--~~~g~-~~~d-IakrL~d~G~hapt-~~~pv-~g~lmiepTE~eskeelD~f~~al~~I~~ 866 (939)
T TIGR00461 795 KHVAHECILDLRPL--K--AKTGI-EAID-VAKRLQDYGFHAPT-LSFPV-PGTLMVEPTESESLEELDRFCDAMIAIKE 866 (939)
T ss_pred CceeEEEEEeccch--h--hhcCC-CHHH-HHHHHHhCCeeccc-cCCcc-CCeEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 22221111233210 0 01111 2344 45567788997543 33443 34335666666888999999999998888
Q ss_pred HHHH
Q 041151 449 EFME 452 (463)
Q Consensus 449 ~~~~ 452 (463)
+..+
T Consensus 867 e~~~ 870 (939)
T TIGR00461 867 EINA 870 (939)
T ss_pred HHHH
Confidence 7765
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-09 Score=110.62 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=99.3
Q ss_pred CCCCC-HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----
Q 041151 105 DSRGI-PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---- 166 (463)
Q Consensus 105 ~~~g~-~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---- 166 (463)
.+.|. .+..+..|+.++ .....+++||++.++..++.+++ .+||.|+++ .|+++
T Consensus 192 ~~~G~i~eAe~~aA~~fg-------Ad~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~ 263 (713)
T PRK15399 192 DHTGPHLEAEEYIARTFG-------AEQSYIVTNGTSTSNKIVGMYAA-PAGSTLLIDRNCHKSLAHLLMMSDVVPIWLK 263 (713)
T ss_pred CCChHHHHHHHHHHHHhC-------CCcEEEEeCChHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeeEEec
Confidence 33443 455555555554 22478899999999999999998 999999998 55555
Q ss_pred cC-CCcc---------cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEE-Eeccccc
Q 041151 167 KR-QQIG---------VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVL-LGDEVYQ 235 (463)
Q Consensus 167 ~~-~~~~---------~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~v-i~Deay~ 235 (463)
+. +.++ ++. +.+++++++.... +++++++|++|+. -|.++. +++|++.| ++.+ ++||||.
T Consensus 264 P~~n~~Gi~g~I~~~~~~~-e~I~~~i~~~p~~-~~p~~vvit~pTY-dGi~yd---~~~I~~~~---g~~~ilvDEAhg 334 (713)
T PRK15399 264 PTRNALGILGGIPRREFTR-DSIEEKVAATTQA-QWPVHAVITNSTY-DGLLYN---TDWIKQTL---DVPSIHFDSAWV 334 (713)
T ss_pred ccccccCCcCCCChhhccH-HHHHHHHHhCCCc-CCceEEEEECCCC-CceeeC---HHHHHHHh---CCCEEEEeccch
Confidence 22 2222 245 7777788764321 2457899999965 699988 55566666 4555 6999997
Q ss_pred cc-ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 236 QN-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 236 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
.. .|.+..+..+.... .+ ..+.-++++.|.+|++++++. .+++-+
T Consensus 335 ah~~F~p~~~~~sam~~---~~---~aD~~i~~tQStHKtL~alTQ--aS~iHv 380 (713)
T PRK15399 335 PYTHFHPIYQGKSGMSG---ER---VPGKVIFETQSTHKMLAAFSQ--ASLIHI 380 (713)
T ss_pred hhhhcCcccCCcChhhC---CC---CCCeeeeeeeehhccccccch--heeeee
Confidence 53 34211221222111 00 122345779999999843333 555554
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-09 Score=98.65 Aligned_cols=324 Identities=15% Similarity=0.120 Sum_probs=199.9
Q ss_pred CCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcC-CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 041151 51 LGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTS-GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSD 129 (463)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~ 129 (463)
-|.++.+|+...-.. +...| ++.+++++.+.+...- .....|. .+-.+.++++...+ .
T Consensus 57 eGk~ylDflsaysaV-------nqGhc----hpki~~aLqeq~~kLtlssrafYn------d~~~~f~~~vt~lf----~ 115 (427)
T KOG1402|consen 57 EGKEYLDFLSAYSAV-------NQGHC----HPKIIKALQEQADKLTLSSRAFYN------DVLGEFAEYVTKLF----G 115 (427)
T ss_pred Cccchhhhhhhhhhc-------ccCCC----CHHHHHHHHHHHhHhhhhhHHHhh------hhHHHHHHHHHHhc----C
Confidence 356677776665433 33444 8999999987766520 1122333 33334455554442 3
Q ss_pred CCcEEEcCCcHHHHHHHHHHHh-----cC--C-CCEEEEc-----cCcee--------c--CCCcc------------cC
Q 041151 130 PELIFLTDGASKGVMQTLNCVI-----RG--E-GDGVVLL-----FHTTW--------K--RQQIG------------VL 174 (463)
Q Consensus 130 ~~~i~~t~G~~~al~~~~~~l~-----~~--~-gd~Vlvp-----~g~~~--------~--~~~~~------------~d 174 (463)
-+.++.+|-+.|+...++...- .+ | ...+++. +|... + -++|+ -|
T Consensus 116 ~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d 195 (427)
T KOG1402|consen 116 YDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGD 195 (427)
T ss_pred cceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCC
Confidence 4567778877999998887652 01 3 3444554 33332 0 01111 16
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH-HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHH
Q 041151 175 IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA-NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253 (463)
Q Consensus 175 ~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~-~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 253 (463)
. ++|+.++++. +..++++.--+---|++.+++ -+.+..++|.+||+++|.||+...+.-++..-......+.|
T Consensus 196 ~-eale~~l~~~-----~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~P 269 (427)
T KOG1402|consen 196 A-EALEVALKSP-----NVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRP 269 (427)
T ss_pred H-HHHHHHhcCC-----CeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCC
Confidence 6 8899998873 788877665577788776655 69999999999999999999998865432211111222211
Q ss_pred hcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH
Q 041151 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE 332 (463)
Q Consensus 254 ~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 332 (463)
+ . |. +.|.+ +-.=+.+..++ .+.++...+..... .+++.+++...++.++|+
T Consensus 270 D---------i-vi---lgKal-SGG~~Pvsavl---~~~~im~~~~pgeHgsTyggNpLg~~vaiAale---------- 322 (427)
T KOG1402|consen 270 D---------I-VI---LGKAL-SGGVYPVSAVL---ADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALE---------- 322 (427)
T ss_pred C---------e-EE---Eeccc-cCCeeeeEEEE---ecHHHHhccCCCccccccCCChHHHHHHHHHHH----------
Confidence 1 1 22 56888 32334566666 48888777655543 578899999999888874
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC----C-cccccCCceeEEeeecc-CChhhHHHHhhcCCCChHHHHHHHHHhc
Q 041151 333 QFVRESKGILESLRRRARMMTDGFNSCR----N-VVCNFTEGAMYSFPQIR-LPPKAIEAAKRAGKVPDVFYCLRLLEAT 406 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~L~~~p----g-~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 406 (463)
.+.+ +++.++-++.-..|++.|++++ + ++.+...| ++.-+-+. .+.+ ..+..+.| ..+++.
T Consensus 323 -vi~e-ekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrG-l~~ai~i~~~~~~---------~~~aw~~c-l~lk~~ 389 (427)
T KOG1402|consen 323 -VIVE-EKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRG-LLNAIVINPSKTS---------GQDAWDVC-LALKEN 389 (427)
T ss_pred -HHHH-HHHHHHHHHHHHHHHHHHHhccccccchhheeeccc-eEEEEEecccccc---------chhHHHHH-Hccccc
Confidence 3332 3566666777778888888863 2 23333333 44433332 1221 01245544 447888
Q ss_pred CeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 407 GISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 407 gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
|++.-|-. ..-+|++.. .+++|++++++.+.+.+.
T Consensus 390 g~LAkptH-------~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 390 GLLAKPTH-------GNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred ccccCCCC-------CCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 88877732 237999998 799999999999988763
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-09 Score=112.36 Aligned_cols=302 Identities=14% Similarity=0.104 Sum_probs=171.5
Q ss_pred CCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cC---C-CCEEEEc--------
Q 041151 100 LGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RG---E-GDGVVLL-------- 161 (463)
Q Consensus 100 ~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~---~-gd~Vlvp-------- 161 (463)
.+.|.| .+|+.++-.++.+++.+..|.+.. .+.. ++++++-...+.++- +. + .++|++|
T Consensus 529 ~hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~~--Sl~p-~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp 605 (954)
T PRK12566 529 LHPFAPREQAEGYRAMIDELEAWLCAITGFDAI--CMQP-NSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP 605 (954)
T ss_pred CCCCCchhhhcCHHHHHHHHHHHHHHHHCCCeE--eecC-CchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH
Confidence 367777 889988888899888887665433 2222 234444444444432 12 2 3577887
Q ss_pred -----cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ .+.+..+|+ ++|++.+.+. ..++.+|++++|++-.+. ++++++|+++|+++|++|++|-
T Consensus 606 asa~~~GieVv~Vp~D~~G~iDl-e~L~a~I~~~---~~~laaVmiT~Pnt~Gv~---e~~V~eI~~iah~~Galv~vDg 678 (954)
T PRK12566 606 ASAQMAGMRVVIVECDPDGNVDL-DDLKAKAAAA---GDRLSCLMITYPSTHGVY---EEGIREICEVVHQHGGQVYMDG 678 (954)
T ss_pred HHHHHCCCEEEEeccCCCCCcCH-HHHHHHhhcc---CCCEEEEEEEecCcCcee---cchHHHHHHHHHHcCCEEEEEe
Confidence 45555 234678999 9999999731 117888888898875433 4569999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC---ceeEEEEecCCChhHHHHHHhhh------
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG---QRGGYFEMTNIPPKTVDEIYKIA------ 303 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G---~R~G~~~~~~~~~~~~~~l~~~~------ 303 (463)
++..... ....... + + -.|+.++++|+|++..| .-+|.+.+ .+.+...+.+.-
T Consensus 679 A~~~a~~----~l~~Pg~----~----G---ADi~~~s~HKtf~~P~G~GGP~vG~iav---~~~L~pfLp~~P~~d~~G 740 (954)
T PRK12566 679 ANLNAQV----GLARPAD----I----G---ADVSHMNLHKTFCIPHGGGGPGMGPIGV---RAHLAPFVANHPVVPVEG 740 (954)
T ss_pred eChhhcc----CCCChhh----c----C---CCEEEecCCcccCcCccCCCCccchhhh---hhhhhhhccCCCCcCCCC
Confidence 9864222 1112222 1 2 23888999999832222 22444332 232222222210
Q ss_pred ----hhcccCChHHH----HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 304 ----SIALSPNVPAQ----IFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 304 ----~~~~~~~~~~q----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
....+.....+ .++..++.. .-.++.+.+..-..+.+++.+.|.+..++.+.++++.++.-.
T Consensus 741 ~~~r~ga~S~~~~gsa~~l~~A~~Yi~~----------lG~eLk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEf 810 (954)
T PRK12566 741 PDPNNGAVSAAPWGSASILPISWMYIAM----------MGPQLADASEVAILSANYLANQLGGAFPVLYRGRNERVAHEC 810 (954)
T ss_pred CCCCCCceeecccchHHHHHHHHHHHHH----------HCHHHHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEE
Confidence 00010111111 111122110 011122333333557778888887643555533333322211
Q ss_pred ecc---CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 376 QIR---LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 376 ~~~---~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+. +|.. .+ .+..+...+|+ ++||...- ..|. ..+++||+.. .+.+||++++++|+++.++.
T Consensus 811 ii~~~~l~~~-------~g-~~~~dvakRL~-d~Gihapt-~~fP---v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~ 877 (954)
T PRK12566 811 ILDLRPLKAQ-------TG-ISEEDVAKRLM-DYGFHAPT-MSFP---VPGTLMVEPTESESKAELDRFVEAMLSIRAEI 877 (954)
T ss_pred EEEccccccc-------cC-CCHHHHHHHHH-HCCcEEeE-Eeec---cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHH
Confidence 122 2211 01 12345555554 88997644 3343 2457999999 89999999999999998887
Q ss_pred HH
Q 041151 451 ME 452 (463)
Q Consensus 451 ~~ 452 (463)
.+
T Consensus 878 ~~ 879 (954)
T PRK12566 878 GK 879 (954)
T ss_pred HH
Confidence 55
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-09 Score=104.67 Aligned_cols=299 Identities=13% Similarity=0.047 Sum_probs=177.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|...++++.+.+.. ..++++. ..++-+.+.+.+++..+.+-+.+-++++.|++.+++.++..++.++|+.|++.
T Consensus 16 ~~~~~~~~~~~~~~----~~HRs~~--F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~ 89 (374)
T TIGR01365 16 PGWSIEELKNAPLG----RSHRSKL--GKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAW 89 (374)
T ss_pred chhhHHHHhhhhcc----cCcCCHH--HHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEE
Confidence 33356666554443 1233332 34555555555555555332222456688899999999999972378888886
Q ss_pred --------------cCc-ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 --------------FHT-TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 --------------~g~-~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+|. .+ ...+..+|+ +.++. + +.|++++.-..||...+. +++. +
T Consensus 90 g~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~-~~ve~----------~-~~v~~vhnETSTGv~npv---~~i~---~ 151 (374)
T TIGR01365 90 ESFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDL-KKVDF----------K-NDVVFTWNGTTSGVRVPN---GDFI---P 151 (374)
T ss_pred CHHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCH-HHcCC----------C-CCEEEecCCCchheeccc---cccc---c
Confidence 454 23 344556788 77762 1 236688888889999885 3333 2
Q ss_pred h-CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 223 Q-ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 223 ~-~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+ +++++|+|.+-+... .+ ..+.. -.+++.|..|++.++|| ++++++ +++.+++..+
T Consensus 152 ~~~~~lliVDavSs~g~----~~-l~~d~-------------iDv~~tgsQK~L~~ppG--ls~v~v---s~~Al~~~~~ 208 (374)
T TIGR01365 152 ADREGLTICDATSAAFA----QD-LDYHK-------------LDVVTFSWQKVLGGEGA--HGMLIL---SPRAVARLES 208 (374)
T ss_pred ccCCCcEEEEccchhcC----CC-CChhH-------------CcEEEEechhccCCCCc--eEEEEE---CHHHHHHHhh
Confidence 3 589999999877532 22 22221 24788999999966677 678875 7777666542
Q ss_pred hh---------h-----------h-cccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Q 041151 302 IA---------S-----------I-ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNS 358 (463)
Q Consensus 302 ~~---------~-----------~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~ 358 (463)
.. . . ..+++.+.-.++.+++ ...+...++ ++.+.++++++++++++.+++
T Consensus 209 ~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~-------~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~ 281 (374)
T TIGR01365 209 YTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWL-------DALKWAESIGGLKPLIARADDNLAVLEAFVAK 281 (374)
T ss_pred cCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHH-------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 0 1122222222322222 111122232 677889999999999999999
Q ss_pred CCC-cccccC----CceeEEeeeccCChhhHHHHhhcCCCCh-----HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 359 CRN-VVCNFT----EGAMYSFPQIRLPPKAIEAAKRAGKVPD-----VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 359 ~pg-~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
+ | +.+... .......+ ..|.+.++. .+.+ .......|+++||.+.+|..-- .+ ..+||+
T Consensus 282 l-g~l~~~~~~~~~rS~tvt~v--~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~--~~-~~fRIg 350 (374)
T TIGR01365 282 N-NWIHFLAETPEIRSNTSVCL--KVVDPAIDA-----LDEDAQADFAKELISTLEKEGVAYDIGSYRD--AP-SGLRIW 350 (374)
T ss_pred C-CCcccCCCChhhcCCCeEEE--EeCCccccc-----cccchhhHHHHHHHHHHHHCCEEEecccccc--CC-CceEEe
Confidence 8 6 665542 12223332 222210000 0001 2335677888899998766432 22 469999
Q ss_pred ec--CCcCcHHHHHHHHHH
Q 041151 429 IL--PAEEDMPAIMESFKK 445 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~ 445 (463)
.. .+.+|++.+++.|.=
T Consensus 351 ~~G~i~~~di~~l~~~l~~ 369 (374)
T TIGR01365 351 CGATVEKSDLECLCPWLDW 369 (374)
T ss_pred cCCcCCHHHHHHHHHHHHH
Confidence 98 788999999988853
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-08 Score=99.17 Aligned_cols=297 Identities=12% Similarity=0.114 Sum_probs=177.6
Q ss_pred CCcHHHHHHHHHHhhhcCC---C---CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEE-EcCCcHHHHHHHHHHHhc
Q 041151 80 VFPADAIARAKHYLSLTSG---G---LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIF-LTDGASKGVMQTLNCVIR 152 (463)
Q Consensus 80 ~~p~~~~~a~~~~~~~~~~---~---~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~-~t~G~~~al~~~~~~l~~ 152 (463)
-+|+++++++.+.+.+... . ..+.++ -..++-+.+.+.+++..+++-+ .+|+ ++.|++.++..+...|+
T Consensus 14 ~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~--~F~~i~~~~~~~Lr~Ll~~P~~-y~Vlfl~GggT~~~ea~~~Nll- 89 (364)
T PRK12462 14 ALPDTVLEQVRQAVVELPETGLSVLGMSHRSS--WFSSLLAQAEADLRDLLGIPDE-YGVVFLQGGSSLQFSMIPMNFS- 89 (364)
T ss_pred CCCHHHHHHHHHHHhcccccCccccccccccH--HHHHHHHHHHHHHHHHhCCCCC-CeEEEEeccHHHHHHHHHHHcC-
Confidence 3499999999987776432 1 222222 1245555555556666565323 2555 55668999999999998
Q ss_pred CCCCEEE-Ec---------------cCcee--cC----CC--cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 153 GEGDGVV-LL---------------FHTTW--KR----QQ--IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 153 ~~gd~Vl-vp---------------~g~~~--~~----~~--~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
.+|+.++ +. +| .+ .. .+ ..++. +.++ +.+ +.+.|.+|+-...||+.
T Consensus 90 ~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~-~~~~--~~~------d~~~v~~t~NETstGv~ 159 (364)
T PRK12462 90 RPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSL-AELD--WDA------RAPFRHYVSNETVEGLQ 159 (364)
T ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCH-HHhc--cCC------CCcEEEEccCCCCceEe
Confidence 8999654 22 33 23 11 11 23344 4431 111 57888888888889998
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
++ ++.+.++.++|+|.+-..+. . +..+ +++ .+++.|..|.+ |+|| ++.+++
T Consensus 160 ~~--------~~~~~~~~llvvD~sS~~~s----~-pid~-----------~~~--dvi~agsQKnl-gP~G--ltvviv 210 (364)
T PRK12462 160 FP--------DAAGLPDSPLIADMSSDFMS----R-PFDV-----------EAY--GMVYAHAQKNL-GPAG--VTVAII 210 (364)
T ss_pred cC--------cccccCCCeEEEEcCchhhC----C-CCCh-----------HHc--cEEEeeccccC-CCCc--eEEEEE
Confidence 86 23334689999998876532 1 2233 222 37889999999 8999 567765
Q ss_pred cCCChhHHHHHHhh------------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHH----HHHHHHHHHHHHHHH
Q 041151 289 TNIPPKTVDEIYKI------------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR----ESKGILESLRRRARM 351 (463)
Q Consensus 289 ~~~~~~~~~~l~~~------------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 351 (463)
+++.+++..+. . +...+++...-+++...++ ++. -++.+.++.+++.++
T Consensus 211 ---s~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~-----------~i~~e~GGl~~~~~r~~~ka~~ 276 (364)
T PRK12462 211 ---RRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLR-----------WIRDEIGGVHAMRDINARKAAM 276 (364)
T ss_pred ---CHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHHH
Confidence 77776654321 1 1223555666666666653 221 145677778888999
Q ss_pred HHHHhhcCCCccccc--C--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEE
Q 041151 352 MTDGFNSCRNVVCNF--T--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRT 427 (463)
Q Consensus 352 l~~~L~~~pg~~~~~--~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRi 427 (463)
+++.+.+.+|+.... + ...+-+. ++++... .+.+| ...++++|+.-.-|..- -+.+|+
T Consensus 277 ly~~id~~~~~~~~~~~~~~RS~mnv~--f~~~~~~----------l~~~f-~~~a~~~gl~~lkGhr~-----vgg~Ra 338 (364)
T PRK12462 277 LYATLDALNEVIDCHAHRAARSTMNVA--FRFRQPR----------LDTLF-KEQSTEAGFCGLSGHRS-----IGGIRA 338 (364)
T ss_pred HHHHHHhCCCcccCCCChhhcCcceEE--EEcCCHH----------HHHHH-HHHHHHCCCccccCCcc-----cCceEE
Confidence 999999886554332 2 2233343 3333221 13454 45578899988766532 124999
Q ss_pred EecCCcCcHHHHHHHHHHHHHHHHHH
Q 041151 428 TILPAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 428 s~~~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
|+=+... .+.+++|.++++++.++
T Consensus 339 s~yna~~--~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 339 SLYNAVS--EQAVSRLCAFLKDFAIR 362 (364)
T ss_pred EcCCCCC--HHHHHHHHHHHHHHHHh
Confidence 9983211 35666666666666655
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-08 Score=103.79 Aligned_cols=257 Identities=13% Similarity=0.091 Sum_probs=160.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---c-CC---
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---R-GE--- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~-~~--- 154 (463)
++...+.+...+...-.....|+ +..++.+.+..++.+..+.+ ..-.=.+|+|+++++.+++.+.- + ..
T Consensus 75 ~~~a~~~~~~~~~~nl~d~~~~p---~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~ 150 (460)
T COG0076 75 PPVAAELLVSALNKNLGDPDESP---AAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAE 150 (460)
T ss_pred HHHHHHHHHHHHhhcCCCcccCh---hHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhc
Confidence 56666666666665322334444 56899999999999888876 33355688899999997777642 0 00
Q ss_pred CC------EEEEc-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeE--EEEECCCCCCccC
Q 041151 155 GD------GVVLL-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRA--MVIINPGNPTGQC 208 (463)
Q Consensus 155 gd------~Vlvp-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~--i~l~~p~NPtG~~ 208 (463)
+. .|++| .|... ......+|+ +++++++.+. +-. |+-+.++-+||.+
T Consensus 151 ~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~-~~l~~~i~~~------t~~g~vV~~aGtT~~G~i 223 (460)
T COG0076 151 SGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDV-DALEEAIDEN------TIGGVVVGTAGTTDTGSI 223 (460)
T ss_pred ccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCH-HHHHHHHHhh------ccCceEEEEecCCCCCcc
Confidence 11 57777 44433 222789999 9999999984 433 7778999999998
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccC-CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQ-DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
+++++|.++|+++++|+.+|.+|..+... .+... .+ .++ -+.. .-+..+++|.++ +-.-+||++
T Consensus 224 ---Ddi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~-~~-----~f~---l~~v-dSIt~d~HK~g~--aP~~~G~il 288 (460)
T COG0076 224 ---DDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDG-RW-----DFG---LEGV-DSITVDGHKYGL--APIGCGVVL 288 (460)
T ss_pred ---CCHHHHHHHHHHcCCcEEEEccccceeecccCccc-hh-----hcC---CCCc-eEEEECcccccC--CCCCceEEE
Confidence 55888888999999999999999887541 11111 10 011 1122 235578999754 556699999
Q ss_pred ecCCCh-hHHHHHHhhhh---------hcccCChHHHHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 041151 288 MTNIPP-KTVDEIYKIAS---------IALSPNVPAQIFMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 288 ~~~~~~-~~~~~l~~~~~---------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L 356 (463)
+ .++ ++.+.+..... .+...++++-.++..+.. +..+ .+..+++.++.-++.+++.+.|
T Consensus 289 ~--rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~--------l~~lG~eGy~~l~~~~~~~a~~la~~l 358 (460)
T COG0076 289 F--RDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYAN--------LRRLGREGYRKLLDRTLELARYLAEEL 358 (460)
T ss_pred E--ECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHH--------HHHhCHhHHHHHHHHHHHHHHHHHHHH
Confidence 8 456 45444432111 122223333222222211 1111 2334556667778899999999
Q ss_pred hcCCCccccc-CCceeEEe
Q 041151 357 NSCRNVVCNF-TEGAMYSF 374 (463)
Q Consensus 357 ~~~pg~~~~~-~~g~~~~~ 374 (463)
++.+.+++.. |..+...|
T Consensus 359 ~~~~~~e~~~~p~l~~V~f 377 (460)
T COG0076 359 EKLGDFELVNEPELPIVAF 377 (460)
T ss_pred HhCCCcEeecCCccceEEE
Confidence 9986688765 54444443
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-07 Score=94.96 Aligned_cols=282 Identities=8% Similarity=-0.020 Sum_probs=170.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--CCCEEEEc-------------cCcee----cC
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG--EGDGVVLL-------------FHTTW----KR 168 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~gd~Vlvp-------------~g~~~----~~ 168 (463)
+..++.+.+-+|+.+..|.+-+.-.=++|+|+++++..++.+-- + +...++++ .|.++ ..
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aAR-e~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d 208 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGR-EVFPDGILYASRESHYSVFKAARMYRMECVKVDTL 208 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHH-hhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC
Confidence 46899999999999888864321134778999999998877753 3 33456666 55555 44
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCe-----EEEecccccccccCCCC
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENL-----VLLGDEVYQQNIYQDER 243 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~-----~vi~Deay~~~~~~~~~ 243 (463)
..+.+|+ +.|++++.+. ..++-+|+.+.+.-++|.+=+ +++|.++|+++|+ |+-+|.+|+.+...--.
T Consensus 209 ~~g~mD~-~aL~~aI~~d---~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~ 281 (470)
T PLN02263 209 VSGEIDC-ADFKAKLLAN---KDKPAIINVNIGTTVKGAVDD---LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVK 281 (470)
T ss_pred CCCcCcH-HHHHHHHHhC---CCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcc
Confidence 5688999 9999999762 112445556788999999944 7888888888886 99999999876431000
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh----h--hhcccCChHHHHHH
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI----A--SIALSPNVPAQIFM 317 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~--~~~~~~~~~~q~~~ 317 (463)
....+. + ..... =+..+.+|+++ ....+|.+++ ....++.+... . ..+...++....++
T Consensus 282 ~~~~~d-----f----~~~vD-SIsvD~HK~l~--~P~~cgvll~---R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al 346 (470)
T PLN02263 282 RAPKVT-----F----KKPIG-SVSVSGHKFVG--CPMPCGVQIT---RMEHINVLSSNVEYLASRDATIMGSRNGHAPI 346 (470)
T ss_pred cccccC-----C----CcCcc-EEEECCccccC--CCcCEEEEEE---ehhhHhhhccChHhhCCCCCCcCCCCCcHHHH
Confidence 111110 0 11111 24578889763 5677999987 33334433221 1 11233333333222
Q ss_pred HHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCceeEEeeeccCChhhHHHHhhcCCCCh
Q 041151 318 GLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGFNSCRNVV-CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 318 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
..+.. +..+ .+..+++.++.-++.+++.+.|++. |+. +..|.....++ +.|. +
T Consensus 347 ~lW~~--------L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f---~~p~-------------~ 401 (470)
T PLN02263 347 FLWYT--------LNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVF---ERPK-------------D 401 (470)
T ss_pred HHHHH--------HHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEE---ecCc-------------h
Confidence 22211 0011 1224455666777788899999888 554 45566655554 3221 1
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.. ..+|..+.+- ...++|++. .+.+.++++++.|++..+...
T Consensus 402 ~~------~~~gW~L~~~--------~~~~Hivvmphv~~~~id~fi~DL~~~~~~~~ 445 (470)
T PLN02263 402 EE------FVRRWQLACQ--------GNIAHVVVMPSVTIEKLDYFLKELVEKRSTWY 445 (470)
T ss_pred HH------hhcceEEccC--------CCcEEEEEcCCCCHHHHHHHHHHHHHHHhhhh
Confidence 11 1346666541 125888888 467888999988887776543
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=105.91 Aligned_cols=238 Identities=15% Similarity=0.128 Sum_probs=139.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh------cCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI------RGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~------~~~g 155 (463)
++.+.+++.+.+... .......-..+.+.++++.+.+..+ -..+.+++++++++|++.+++... ..++
T Consensus 34 ~p~i~~ai~~~~~~~----~~~~~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~sGseAve~Alkla~~~~~~~~~~~ 107 (339)
T PF00202_consen 34 HPEIAEAIAEQANKL----NYVSFSGFTHPEAAELAEKLAELFP--GGLDRVFFANSGSEAVEAALKLARQYHNKRAYTG 107 (339)
T ss_dssp -HHHHHHHHHHHHHC----SSCSTTTSEEHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHHHHHHHHHHHHHHHTHHHT
T ss_pred ccccchhHHHHhhhc----ccccccceeccchhhhhhhhhhccc--cccceeeeccCchHHHHHHHHHhhcccccccccC
Confidence 678888988887762 1112233345677778888776632 134599999999999999998764 2233
Q ss_pred -CEEEEc----cCcee----------------cCCCc-----ccChHHH----------HHHHHHHHHhcCCceeEEEEE
Q 041151 156 -DGVVLL----FHTTW----------------KRQQI-----GVLIIND----------LQQSVAQARSKGITVRAMVII 199 (463)
Q Consensus 156 -d~Vlvp----~g~~~----------------~~~~~-----~~d~~~~----------l~~~l~~~~~~~~~~~~i~l~ 199 (463)
..|+.. +|... +...+ -.+. .. +++.+..... .++.+|++.
T Consensus 108 r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~iaavivE 184 (339)
T PF00202_consen 108 RRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDP-AADEEEQACLNALEELIAALNA--DEIAAVIVE 184 (339)
T ss_dssp TTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCH-HHHHHHHHHHHHHHHHHHHHHG--GGEEEEEEE
T ss_pred CceEEEeeeeeeccCcccccccCCccccccccccccccccccCCcc-chhhhHHHHHHHHHHHHHhhcC--CcEEEEEEe
Confidence 455554 22221 00000 0122 22 3333333222 267777776
Q ss_pred CCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC
Q 041151 200 NPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278 (463)
Q Consensus 200 ~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 278 (463)
--..-.|. ..+.+-+++|.++|++||+++|.||++..+.-. +. ...... .++ ..+ | -+++|.+ +
T Consensus 185 Pi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRt-G~-~~a~~~--~gv----~PD---i--v~~gK~l-~- 249 (339)
T PF00202_consen 185 PIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRT-GK-FFASEH--YGV----DPD---I--VTFGKGL-G- 249 (339)
T ss_dssp SSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTT-SS-SSGHHH--HTS----SSS---E--EEEEGGG-G-
T ss_pred ccccccCccccccchhhehcccccccccceeccccccccccc-CC-ccceec--ccc----cCc---c--cccccch-h-
Confidence 33333454 446677999999999999999999999986321 12 111111 122 332 3 3356999 4
Q ss_pred CCceeEEEEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 279 CGQRGGYFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 279 ~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
.|+.+|.+++ ++++.+.+.... ..++..++++..++.+.|+ .+++ .++.++.+++-+.+.+.|+
T Consensus 250 gG~p~sav~~---~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~-----------~~~~-~~~~~~~~~~g~~l~~~L~ 314 (339)
T PF00202_consen 250 GGLPISAVLG---SEEIMEAFQPGSHGSTFGGNPLSCAAALATLE-----------ILEE-EDLLERVRELGERLREGLR 314 (339)
T ss_dssp TTSSEEEEEE---EHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccc---cchhhccccccccccccccchHhhhhhhhHHH-----------hhcc-HHHHHHHHHHHHHHHHHHH
Confidence 5799999994 888877764433 2467778888888877763 2221 2345555666666666665
Q ss_pred c
Q 041151 358 S 358 (463)
Q Consensus 358 ~ 358 (463)
+
T Consensus 315 ~ 315 (339)
T PF00202_consen 315 E 315 (339)
T ss_dssp H
T ss_pred H
Confidence 4
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.04 E-value=5e-07 Score=89.68 Aligned_cols=319 Identities=17% Similarity=0.137 Sum_probs=189.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-CCCEEE-
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-EGDGVV- 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-~gd~Vl- 159 (463)
.+..++++.. .+ ..|........|.+.+++.++ -+.++.|..+..+-..++..++ + ||+.+.
T Consensus 56 S~~m~aAM~~--GD-----D~Y~gdpSv~~Lee~vael~G--------~E~alpthqGRgaE~Il~~~~~-~~~g~e~g~ 119 (467)
T TIGR02617 56 TQSMQAAMMR--GD-----EAYSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLI-KKREQEKGL 119 (467)
T ss_pred CHHHHHHHHc--CC-----cccccCchHHHHHHHHHHHhC--------CceEEECCCCchHHHHHHHhhc-ccccccccc
Confidence 4666666664 22 357766667899999999985 3557888777888889998887 6 555444
Q ss_pred ------Ec--------------cCcee-----c-------C--CCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCC
Q 041151 160 ------LL--------------FHTTW-----K-------R--QQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNP 204 (463)
Q Consensus 160 ------vp--------------~g~~~-----~-------~--~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NP 204 (463)
++ .|+.+ + . ....+|+ +.|++++++...+ +...+... ..|.-
T Consensus 120 ~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl-~~le~~I~~~g~~--~i~~v~~tlt~N~~ 196 (467)
T TIGR02617 120 DRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDL-EGLERGIEEVGPN--NVPYIVATITCNSA 196 (467)
T ss_pred cccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCH-HHHHHHHhhcCCC--CceeeeeeEEEecC
Confidence 12 44433 1 1 2467899 9999999864111 22232222 11222
Q ss_pred CccCCCHHHHHHHHHHhhhCCeEEEecccccc--ccc----CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC
Q 041151 205 TGQCLSEANLREILRFCYQENLVLLGDEVYQQ--NIY----QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278 (463)
Q Consensus 205 tG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 278 (463)
-|+.+|.+.++++.++|++||+.++.|-+=-. -.| .......++..+..++ .... ..+..|+||.+ +
T Consensus 197 GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~----~~~a-Dsvt~slsKgl-g- 269 (467)
T TIGR02617 197 GGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRET----YKYA-DMLAMSAKKDA-M- 269 (467)
T ss_pred CCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHh----hccC-CEEEEEcCCCC-C-
Confidence 47899999999999999999999999964211 000 0011234566554443 2221 24668999987 4
Q ss_pred CCceeEEEEecCCCh---hHHHHHHhhhh------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 041151 279 CGQRGGYFEMTNIPP---KTVDEIYKIAS------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRA 349 (463)
Q Consensus 279 ~G~R~G~~~~~~~~~---~~~~~l~~~~~------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (463)
..+|-+++. .++ ++.++.+...- ...+.+.-...+++.-|.... -.+++.+ --+..
T Consensus 270 --ApvGg~Lag-~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~-----~~~yl~~-------ri~qv 334 (467)
T TIGR02617 270 --VPMGGLLCF-KDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-----NLDWLAY-------RINQV 334 (467)
T ss_pred --CcccceEEe-cchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcc-----cHHHHHH-------HHHHH
Confidence 444544442 244 33344333221 133556666666665554221 1112221 12335
Q ss_pred HHHHHHhhcCCCcccccCCceeEEeeecc--CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCC-CCCC------
Q 041151 350 RMMTDGFNSCRNVVCNFTEGAMYSFPQIR--LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSG-FGQK------ 419 (463)
Q Consensus 350 ~~l~~~L~~~pg~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~-f~~~------ 419 (463)
++|.+.|.+. |+.+.. .||.-+++|.. +|.- ...+ -....++..+..+.||--.- |+. ++..
T Consensus 335 ~yl~~~L~~~-Gvpi~~-~Gghav~iDa~~~lphi--p~~~----fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~ 406 (467)
T TIGR02617 335 QYLVNGLEEI-GVVCQQ-AGGHAAFVDAGKLLPHI--PADQ----FPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQ 406 (467)
T ss_pred HHHHHHHHhC-CCcEEe-cCccEEEEehhhhCCCC--Chhh----CcHHHHHHHHHHHcCcceEeecceecccCCCCCcc
Confidence 6888889887 888877 78877776542 1210 0001 12456677888899987554 322 1211
Q ss_pred --CCCcEEEEEec---CCcCcHHHHHHHHHHHHHH
Q 041151 420 --EGIFHLRTTIL---PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 420 --~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~ 449 (463)
+.-..+|+++. =+.+.++...+++..+.++
T Consensus 407 ~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 407 LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred CCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 11247999999 4678899888888776654
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.7e-08 Score=98.64 Aligned_cols=156 Identities=17% Similarity=0.192 Sum_probs=108.2
Q ss_pred ccCCCCCC-HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee-
Q 041151 102 AYSDSRGI-PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW- 166 (463)
Q Consensus 102 ~Y~~~~g~-~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~- 166 (463)
.-..+.|. .+..+..|+.++ .....+++||++.++..++.+++ .+||.|+++ .|..+
T Consensus 64 ~Ll~p~G~i~eAqe~aA~~fg-------Ad~tyFvvNGTS~ank~vi~a~~-~~GD~VLvdRN~HKSi~~glilaGa~Pv 135 (557)
T COG1982 64 SLLDPEGPIKEAQELAARVFG-------ADHTYFVVNGTSTANKAVINAVL-TPGDKVLVDRNCHKSIHHGLILAGATPV 135 (557)
T ss_pred cccCCCccHHHHHHHHHHHhC-------CCceEEEECCccHHHHHHHHhhc-CCCCEEEecCCccHHHHHHHHHcCCceE
Confidence 33344444 456666666654 22378999999999999999998 999999999 55554
Q ss_pred ---c-CC-----CcccChHHHHHHHHHHHHhcCCce-eEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 167 ---K-RQ-----QIGVLIINDLQQSVAQARSKGITV-RAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 167 ---~-~~-----~~~~d~~~~l~~~l~~~~~~~~~~-~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
+ .+ -.+++. +.+++++.+.. .. |+++++||.. -|.++. +++|++++.++++|+++|+++..
T Consensus 136 yl~p~~np~~gi~ggI~~-~~~~~~l~~~~----~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~~a~v~~deah~~ 206 (557)
T COG1982 136 YLEPSRNPLYGIIGGIPL-ETFKEALLAHP----DAEKLAVITNPTY-DGVCYN---LRKIVELLHHYGAWVLYDEAHPA 206 (557)
T ss_pred EecCCCCccccccCCCCH-HHHHHHHHhCh----hhheeEEEecCcc-ceEeec---HHHHHHHHhhcCceEEhhhcCcc
Confidence 1 22 256799 99999887642 34 8899999987 599988 66777788899999999999975
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEe
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEM 288 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~ 288 (463)
..- .....+. .. ...+.+++.-|.+|.++ ++. ..++-+
T Consensus 207 ~~~-~~~~l~~-~~---------~~~~~~~~tqS~HK~l~---alSQaS~iHv 245 (557)
T COG1982 207 HFD-FSPMLPE-SA---------LNGGADFVTQSTHKLLA---ALSQASMIHV 245 (557)
T ss_pred ccc-ccccCcc-hh---------hhcCceEEEechhhhhh---hhhhhHHHhh
Confidence 421 1111111 11 12346799999999883 554 444444
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.8e-08 Score=93.43 Aligned_cols=213 Identities=12% Similarity=0.071 Sum_probs=131.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-----CCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-----GEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-----~~gd 156 (463)
.+++.+++.+...........|-.-+ .-.+.+.+.+...+ -.++.|++.+++++|+..++..-.+ .+-+
T Consensus 74 npev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~~~~~-----~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~ 147 (433)
T KOG1401|consen 74 NPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSAVLGK-----GSAERVFFCNSGTEANETALKFARKFTGKKHPEK 147 (433)
T ss_pred CHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHhcccC-----CCccEEEEecCCcHHHHHHHHHHHHhhcccCCcc
Confidence 67888888777665322333333322 23444444444321 2788999999999999999987541 1111
Q ss_pred --EEEEc----cCcee-------------cCCC--------cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-cC
Q 041151 157 --GVVLL----FHTTW-------------KRQQ--------IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG-QC 208 (463)
Q Consensus 157 --~Vlvp----~g~~~-------------~~~~--------~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG-~~ 208 (463)
.++.- +|... +.+. .--|. ..+++.++... ....+||+.--.---| ..
T Consensus 148 ~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~-t~l~k~~~~h~---~~IaAVIvEPiqGaGG~~p 223 (433)
T KOG1401|consen 148 KTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDS-TALEKLFESHK---GEIAAVIVEPIQGAGGIIP 223 (433)
T ss_pred ceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCH-HHHHHHHHhCC---CceEEEEEecccCCCCccc
Confidence 24443 33222 1110 11155 88999988731 1357776663333344 34
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
..+|-+..|..+|+++++++|.||++..+.-.+ ..-..++ ++. .. -+.++.|.+ + .|+.+|..+
T Consensus 224 ~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g---~~~a~e~---~~~--~P-----DI~t~aK~L-~-gGlPigA~~- 287 (433)
T KOG1401|consen 224 ADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLG---YGWAQEY---FGV--TP-----DITTVAKPL-G-GGLPIGATG- 287 (433)
T ss_pred CCHHHHHHHHHHHhhcCceEEeehhhhCccccc---hHHHHHH---hCc--CC-----cceeehhhc-c-CCceeEEEe-
Confidence 567789999999999999999999998753211 1111111 111 11 236789999 4 689999999
Q ss_pred cCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcC
Q 041151 289 TNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVN 322 (463)
Q Consensus 289 ~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~ 322 (463)
++.++.+.+..- +..+++.+++...++...|.
T Consensus 288 --v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~ 323 (433)
T KOG1401|consen 288 --VRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLD 323 (433)
T ss_pred --ehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHH
Confidence 488888877532 23577888888888887764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-07 Score=102.58 Aligned_cols=297 Identities=10% Similarity=0.102 Sum_probs=166.4
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCC--CC----CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDS--RG----IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~--~g----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
.|+.+++++.+...-+ ..++.|.+. +| +.++++.|+++.+ ++++++-++.|++.+.+.++.++-..+
T Consensus 117 ~P~~v~~~i~~~~~~~-TaytPYqaEisQG~lqal~~~Qt~ia~LtG------~~~anaSL~d~aTAaaea~~~a~~~~~ 189 (993)
T PLN02414 117 VPPVILRNILENPGWY-TQYTPYQAEIAQGRLESLLNYQTMITDLTG------LPMSNASLLDEGTAAAEAMAMCNNILK 189 (993)
T ss_pred CCHHHHHHHHhChHHH-hhcCCCchHHHHHHHHHHHHHHHHHHHHhC------CChhhEeecCChHHHHHHHHHHHhccc
Confidence 3667768777654421 123444432 33 2466777777765 789999999999999998887763244
Q ss_pred C--CEEEEc---cCcee-----c--CCCcccChH--HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 155 G--DGVVLL---FHTTW-----K--RQQIGVLII--NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 155 g--d~Vlvp---~g~~~-----~--~~~~~~d~~--~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
| ++|+++ +.... . ..+..+..+ +... ...+ .+-.+++.+|++ +|.+.+ +++|+++
T Consensus 190 g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~-~~~~------~v~~vlvq~P~~-~G~v~d---v~~I~~~ 258 (993)
T PLN02414 190 GKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFD-YSSG------DVCGVLVQYPAT-DGEVLD---YAEFVKN 258 (993)
T ss_pred CCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhc-cccC------ceEEEEEecCCC-CeEEcC---HHHHHHH
Confidence 4 789997 11111 1 111111110 1100 0011 344445556665 899966 8888889
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC---CCceeEEEEecCCChhHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE---CGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~---~G~R~G~~~~~~~~~~~~~ 297 (463)
|+++|+++++ -+...... ...+... + +-.|+++|..|+. +. .|=+.|++++ .+++.+
T Consensus 259 ah~~GaL~iV-aad~lal~----~l~~pge----~-------GADi~vgsgqKwg-~P~G~GGP~aGflav---r~~~~r 318 (993)
T PLN02414 259 AHANGVKVVM-ATDLLALT----MLKPPGE----W-------GADIVVGSAQRFG-VPMGYGGPHAAFLAT---SQEYKR 318 (993)
T ss_pred HHHcCCEEEE-EECHHHhc----CCCCHhh----c-------cCcEEEECCCccc-cCCCCCCCCeeEEEE---CHHHHh
Confidence 9999999999 44332111 1112222 1 2247889999964 22 2334899986 555544
Q ss_pred HHH-hhhhh------------------------cccCChHHHHHHHHhcCCCCCCCchHHHH-HHH-HHHHHHHHHHHHH
Q 041151 298 EIY-KIASI------------------------ALSPNVPAQIFMGLMVNPLKPGDISYEQF-VRE-SKGILESLRRRAR 350 (463)
Q Consensus 298 ~l~-~~~~~------------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 350 (463)
.+- .+-+. ..+.+.....++.+.+. ..|..+ ..+ +++++++..++..
T Consensus 319 ~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la------~~y~~~~g~~Gl~~Ia~ri~~la~ 392 (993)
T PLN02414 319 LMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMA------AMYAVYHGPEGLKTIAQRVHGLAG 392 (993)
T ss_pred hCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHH------HHHHHHhccccHHHHHHHHHHHHH
Confidence 331 00000 01122212222222221 111111 111 4567778888888
Q ss_pred HHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 351 MMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 351 ~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
++.+.|... |+++..+ .+|-.+.++++ +..+ +.+.|.++||.++.-. .+.+|+|+.
T Consensus 393 ~l~~~L~~~-G~~~~~~--~~f~~vt~~~~-------------~~~~-v~~~L~~~gI~l~~~~-------~~~lrvs~~ 448 (993)
T PLN02414 393 VFAAGLKKL-GFQVQSL--PFFDTVKVKCS-------------DADA-IADAAAKVGINLRVVD-------ANTVTVSFD 448 (993)
T ss_pred HHHHHHhhc-CCccCCC--CCcCeEEEecC-------------CHHH-HHHHHHHCCCeeEEec-------CCeEEEEee
Confidence 999999875 7776543 33333223432 1333 4556778899776422 126999999
Q ss_pred --CCcCcHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKK 445 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~ 445 (463)
++++||+.+++.|+.
T Consensus 449 e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 449 ETTTLEDVDKLFKVFAG 465 (993)
T ss_pred ccCCHHHHHHHHHHHcc
Confidence 899999999999963
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-09 Score=94.57 Aligned_cols=59 Identities=25% Similarity=0.527 Sum_probs=55.6
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhcC--CCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 102 AYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 102 ~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
.|++..|.++||+++|+|+++++| +++++++|++|+|+++++..++.+++ +|||.|++|
T Consensus 87 ~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~-dpGD~VlVp 147 (153)
T PLN02994 87 LFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA-DPGDAFLVP 147 (153)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc-CCCCEEEEe
Confidence 488899999999999999999888 67899999999999999999999998 999999997
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-07 Score=100.05 Aligned_cols=215 Identities=12% Similarity=0.052 Sum_probs=123.8
Q ss_pred ceeEEEEEC-CCCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 192 TVRAMVIIN-PGNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 192 ~~~~i~l~~-p~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
++.+|++.- .+.--|.+. +..-+++|.++|++||+++|.||++..|.-.+ .+.+. ..+|+ .. =+-
T Consensus 584 ~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG-----~~fa~-e~~gv--~P-----DIi 650 (817)
T PLN02974 584 HIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLG-----VESAW-ELLGC--KP-----DIA 650 (817)
T ss_pred CEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCccc-----chhhH-HhcCC--CC-----CEE
Confidence 567776664 245557654 67789999999999999999999998863211 11111 12211 11 125
Q ss_pred cCCcccCCCCC-ceeEEEEecCCChhHHHHHHh------h-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 270 TVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYK------I-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 270 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~------~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
+++|.+ + .| +.+|.++ .++++.+.+.. + ...+++.++++..++.+.|+-.. .+..+. .+
T Consensus 651 ~~gKgL-t-gG~~Plaa~l---~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~-~~~~~~-------~l 717 (817)
T PLN02974 651 CYAKLL-T-GGLVPLAATL---ATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYK-DPSTNP-------NL 717 (817)
T ss_pred eecccc-c-CCCCccEEEE---EcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHH-cccHHH-------HH
Confidence 689998 4 68 5899998 48899888852 1 23578888999888887764211 001111 11
Q ss_pred HHHHHHHHH----HHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCC-ChHHHHHHHHH-hcCeEeeCCCC
Q 041151 342 LESLRRRAR----MMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV-PDVFYCLRLLE-ATGISTVPGSG 415 (463)
Q Consensus 342 ~~~~~~~~~----~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~-~~gI~v~pg~~ 415 (463)
.+.-.+..+ .+.+.|.++|.+.-+...| +++-+.+.-+.. + .++. .....+...+. ++||+++|.
T Consensus 718 ~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~G-l~~~iel~~~~~-----~-~~~~~~~a~~v~~~~~~~~Gl~~r~~-- 788 (817)
T PLN02974 718 IPPGSRLRELWDEELVRAISSLPNVERVVSLG-TVLALELDAEGS-----G-SGYSSLYARSVVRRLRREDGIYARPL-- 788 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeeEEEeee-eEEEEEEecCCc-----c-cccchHHHHHHHHHHHHhCCEEEEec--
Confidence 122222222 2323344455444344444 333333321110 0 0010 01122334455 899999883
Q ss_pred CCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 416 f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
+ +.+|+... .+++++++++++|.+.+
T Consensus 789 -G-----nvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 789 -G-----NVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred -C-----CEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2 26888766 78899999999998765
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-07 Score=92.31 Aligned_cols=261 Identities=14% Similarity=0.100 Sum_probs=154.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCC-----CCCcEEEcCCcHHHHHHHHHHHh-----
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS-----DPELIFLTDGASKGVMQTLNCVI----- 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~-----~~~~i~~t~G~~~al~~~~~~l~----- 151 (463)
+..++..+....-+. +...|.......++..++.+|+.+..|.+- ....=++|+|+++++..++.+.-
T Consensus 52 ~~~i~~~~l~~~~n~--n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~ 129 (373)
T PF00282_consen 52 PASILADLLASALNQ--NGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALP 129 (373)
T ss_dssp HHHHHHHHHHHHHT---BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc--cccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhh
Confidence 555555554433331 333443333467899999999999989872 12356788999999987775541
Q ss_pred --cCC-----CC-EEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 152 --RGE-----GD-GVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 152 --~~~-----gd-~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
... +. .|+++ .|..+ .+.++.+|+ ++|++++.+...+|..+=+|+.+.....||
T Consensus 130 ~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~-~~L~~~l~~~~~~g~~p~~vvat~Gtt~~G 208 (373)
T PF00282_consen 130 RSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDI-EALEKALEKDIANGKTPFAVVATAGTTNTG 208 (373)
T ss_dssp HHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-H-HHHHHHHHHHHHTTEEEEEEEEEBS-TTTS
T ss_pred hhhhcccccccccccccccccccHHHHhcceeeeEEEEecCCcchhhhH-HHhhhhhcccccccccceeeeccCCCcccc
Confidence 011 23 34444 44444 445688999 999999998766653344566668888899
Q ss_pred cCCCHHHHHHHHHHhhhCCeEEEeccccccccc-CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIY-QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 207 ~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
.+ +++++|+++|+++++|+-+|.+|....+ .+.... -... .+.. + =+..+++|++ + .-..+|+
T Consensus 209 a~---D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~-~~~g-i~~a-----d----Sit~d~HK~l-~-~P~~~~~ 272 (373)
T PF00282_consen 209 AI---DPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRH-LLFG-IERA-----D----SITIDPHKWL-G-VPYGCGV 272 (373)
T ss_dssp BB----SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGG-GGTT-GGGE-----S----EEEEETTTTT-S--SSS-EE
T ss_pred cc---cCHHHHhhhccccceeeeecccccccccccccccc-cccc-cccc-----c----ccccchhhhh-c-CCcccee
Confidence 98 6688899999999999999999987332 111111 1111 1111 1 2457899987 4 4567999
Q ss_pred EEecCCChhHHHHHHhhh------------------hhcccCChHHHHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHH
Q 041151 286 FEMTNIPPKTVDEIYKIA------------------SIALSPNVPAQIFMGLMVNPLKPGDISYEQF-VRESKGILESLR 346 (463)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 346 (463)
+++ .++.......... ..+...++ ...++..++. +..+ .+-..++.++..
T Consensus 273 ~l~--r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~--------l~~~G~~G~~~~i~~~~ 341 (373)
T PF00282_consen 273 LLV--RDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWAT--------LKSLGREGYRERIRRCI 341 (373)
T ss_dssp EEE--SSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred EEe--ecccchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHH--------HHhcCHHHHHHHHHHHH
Confidence 987 5555443321110 01233344 3344444321 1111 222555666777
Q ss_pred HHHHHHHHHhhcCCCccccc-CCceeE
Q 041151 347 RRARMMTDGFNSCRNVVCNF-TEGAMY 372 (463)
Q Consensus 347 ~~~~~l~~~L~~~pg~~~~~-~~g~~~ 372 (463)
+..+++.+.|++.+++++.. |.-+..
T Consensus 342 ~~a~~l~~~l~~~~~~el~~~~~~~~v 368 (373)
T PF00282_consen 342 ELARYLADRLRKDPRFELVNEPDLNIV 368 (373)
T ss_dssp HHHHHHHHHHHTSTTEEESSTTSSSEE
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCceEE
Confidence 78899999999988888765 444433
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.4e-07 Score=100.83 Aligned_cols=257 Identities=12% Similarity=0.140 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC--CCEEEEc-----------------cCcee---cC
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE--GDGVVLL-----------------FHTTW---KR 168 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~--gd~Vlvp-----------------~g~~~---~~ 168 (463)
++++.++++.+ +++.++-+..+++.+.+.++.++-..+ +++|+++ .|.++ +.
T Consensus 125 ~~Qt~la~LtG------~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~ 198 (954)
T PRK05367 125 NFQTMVADLTG------LEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDA 198 (954)
T ss_pred HHHHHHHHHHC------CChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecC
Confidence 44555555554 678899999999999998888763144 4899997 34443 11
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
.. |. + .+ ++-++++.+|+ -+|.+.+ +++|+++|+++|+++++|-....+.. .. +.
T Consensus 199 ~~---d~-~------~~------~~~~vlvq~p~-~~G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~--l~---~p 253 (954)
T PRK05367 199 AK---AL-D------HD------DVFGVLLQYPG-TSGEVRD---YTALIAAAHARGALVAVAADLLALTL--LT---PP 253 (954)
T ss_pred cc---CC-C------cc------cEEEEEEecCC-CCeeecc---HHHHHHHHHHcCCEEEEEehhhhccC--CC---Ch
Confidence 11 22 1 11 46666666775 5899975 88899999999999999875533222 11 12
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcc-----cCCCCCceeEEEEecCCChhHHHHHHhh-hhh-----------------
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKG-----YWGECGQRGGYFEMTNIPPKTVDEIYKI-ASI----------------- 305 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~-----~~g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~----------------- 305 (463)
.+ + + -.|+++|..|+ | |-|| .|++.+ .+++.+.+.-. -..
T Consensus 254 ge----~----G---aDi~vgs~qkfg~P~g~-GGP~--aGflav---r~~~~r~lpgrivG~s~d~~g~~~~~lalqtR 316 (954)
T PRK05367 254 GE----M----G---ADIAVGSAQRFGVPMGF-GGPH--AAYFAV---RDAYKRSMPGRIVGVSVDAAGNPALRLALQTR 316 (954)
T ss_pred hh----c----C---CCEEEeeCcccCCCCCC-CCCC--EEEEEE---CHHHHhhCCCCeeeeecccCCCcccccccccc
Confidence 11 2 2 23888999997 5 5566 899986 56665554210 000
Q ss_pred -------cccCChHHHHHHHHhcCCCCCCCchHHHHH-HH-HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeee
Q 041151 306 -------ALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RE-SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQ 376 (463)
Q Consensus 306 -------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~ 376 (463)
..+.+.....++.+.+. ..|-.+. .+ +++++++...+..++.+.|... |+++..+ .+|-.+.
T Consensus 317 eqhiRrekaTsNict~qaL~a~~a------~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~-G~~~~~~--~~f~~~~ 387 (954)
T PRK05367 317 EQHIRREKATSNICTAQVLLAVMA------SMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL-GLEVVHD--SFFDTLT 387 (954)
T ss_pred cccccccccccccchHHHHHHHHH------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CcccCCC--CCCCeEE
Confidence 00111111111111111 1121222 22 5667788888889999999774 8776543 2333322
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~ 444 (463)
++.+. +..+ +.+.|.++||.+.. .. ...+|+|+. ++++||+.+++.|.
T Consensus 388 ~~~~~------------~~~~-i~~~l~~~gi~~~~---~~----~~~l~is~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 388 VEVGG------------DAAA-VLARALAAGINLRR---VD----DDHVGISLDETTTREDLAALLAVFG 437 (954)
T ss_pred EeCCC------------CHHH-HHHHHHHCCceecc---cc----CCEEEEEecccCCHHHHHHHHHHHc
Confidence 33321 1334 45567788998833 11 236999999 88999999999997
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-07 Score=86.72 Aligned_cols=270 Identities=15% Similarity=0.152 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEEccCcee-----------------cCCCcc
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVLLFHTTW-----------------KRQQIG 172 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlvp~g~~~-----------------~~~~~~ 172 (463)
.|-..+|-.++ ..+++++++++++-.++.++.+.++ .+|+.|+++.+... ......
T Consensus 80 ~lgdklApLiG------A~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~ 153 (407)
T COG3844 80 RLGDKLAPLIG------ARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGV 153 (407)
T ss_pred HHHHHhhhhhc------CCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceee
Confidence 34455565655 5678999999999999988888764 46899999811111 123344
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
+.+ .++++.+++ ++.+|++++.|.-||+.+. +.+|.+++++++++++.|-+|+.... +..+.
T Consensus 154 ~~P-~~~~~~~~d------d~AvV~L~~V~y~TGql~d---m~aiT~~AH~~galv~wDLAHsaGav-----p~~Lh--- 215 (407)
T COG3844 154 IAP-RALEEAITD------DVAVVLLSHVNYKTGQLLD---MRAITALAHQHGALVGWDLAHSAGAV-----PVDLH--- 215 (407)
T ss_pred eCh-HHHHHhhcc------ceEEEEeccccccccceee---HHHHHHHHHhcCceEEeehhcccCCc-----ceeec---
Confidence 566 899999998 8999999999999999988 67777788899999999999987544 12221
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhc------------------------cc
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIA------------------------LS 308 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~------------------------~~ 308 (463)
..+-.+-|++.-|.+.|-||--.|.-+ .++..+......+.. .+
T Consensus 216 --------~~gaDfaigcsyKYLNgGPGapa~l~v----~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt 283 (407)
T COG3844 216 --------AAGADFAIGCSYKYLNGGPGAPAGLFV----APRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGT 283 (407)
T ss_pred --------ccCCCeeeeeeceeccCCCCCceeEEe----ccccccccccccccccCCCCcchhhhccCcCccccceeeCC
Confidence 112236789999999877887544444 344444332222111 12
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhc-CC--CcccccC-----CceeEEeeeccC
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNS-CR--NVVCNFT-----EGAMYSFPQIRL 379 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~-~p--g~~~~~~-----~g~~~~~~~~~~ 379 (463)
++.++..++...| +-+.+. +.++|++=-...+++.+.++. ++ ++.+..| .|+-..+ ..
T Consensus 284 ~~V~s~aal~~aL----------Difa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~---~h 350 (407)
T COG3844 284 QPVLSLAALEGAL----------DIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSL---YH 350 (407)
T ss_pred cchhhhHHHhhhh----------hhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeE---ec
Confidence 2222222222222 122221 455666666667778877765 34 5555555 2444333 33
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~ 450 (463)
|. ...+.+.|.++||.. .|..+ ..+|+.+. .+.+|+=.+++.|.+++.+.
T Consensus 351 p~--------------~~~V~qaLi~rGVig----D~R~P---~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 351 PH--------------GYQVMQALIDRGVIG----DFREP---DVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred Cc--------------HHHHHHHHHHcCccc----cccCC---CeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 42 334667788999953 34432 37999999 78899999999999998765
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-06 Score=82.33 Aligned_cols=309 Identities=16% Similarity=0.180 Sum_probs=194.0
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC-----EEEEc-------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD-----GVVLL------------- 161 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-----~Vlvp------------- 161 (463)
-..|..+.++..|++++.+.++ -+-++.|.-+..|=..++..++ ++|+ +..++
T Consensus 72 DEAYagsrs~~~L~~avkdifG--------fq~~iPthQGRgAE~Il~~i~i-k~~~~~pg~~~~~~sN~~FdTTr~h~~ 142 (471)
T COG3033 72 DEAYAGSRSYYALADAVKDIFG--------FQYTIPTHQGRGAENILIPILI-KKGEQEPGSKMVAFSNYHFDTTRGHIQ 142 (471)
T ss_pred chhhcccccHHHHHHHHHHhcC--------ceeeeeccCCccHHHHHHHHHh-hhccccCCccccccccceecchhHHHH
Confidence 3578888999999999999885 2556667766666666666666 4443 33333
Q ss_pred -cCcee--------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 -FHTTW--------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 -~g~~~--------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
+|+.+ ......+|+ +.|++.+.+...+ ++-.|+++ ..|.-.|+..|.+.+++..++|++|+
T Consensus 143 ~ng~~~~n~~~~ea~d~~~~~pFKGd~D~-~kLe~lidevG~~--nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ 219 (471)
T COG3033 143 INGATPRNVYVDEAFDTEVKYPFKGNFDL-EKLERLIDEVGAD--NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYD 219 (471)
T ss_pred hcCCccccccccccccccccCCCCCccCH-HHHHHHHHHhCcc--cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcC
Confidence 45444 123456899 9999999986433 46666666 66777889999999999999999999
Q ss_pred eEEEeccccc-cccc-----CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh---HH
Q 041151 226 LVLLGDEVYQ-QNIY-----QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK---TV 296 (463)
Q Consensus 226 ~~vi~Deay~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~---~~ 296 (463)
+.++.|.+=. +-.| ..+....|+.++..++ ..+.. -...|.-|. |+..+ .|++++ .++. +.
T Consensus 220 ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm----~sYaD-~~~mS~KKD--~lvnm-GGfl~~--~D~~~fDvy 289 (471)
T COG3033 220 IPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREM----YSYAD-GCTMSAKKD--GLVNM-GGFLCF--KDDSFFDVY 289 (471)
T ss_pred CcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHH----Hhhhh-hheeecccc--ceecc-ccEEEe--cCccHHHHH
Confidence 9999996521 1111 1223445777776665 32211 233555564 55554 577777 3443 44
Q ss_pred HHHHhhh------hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCce
Q 041151 297 DEIYKIA------SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGA 370 (463)
Q Consensus 297 ~~l~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~ 370 (463)
...+... ....+.+.-...+++.-|.... -.+|+++ + -++.++|.+.|.+. |+.+..|.||
T Consensus 290 ~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~-----~~~yl~~------R-v~Qv~YL~~~l~~~-GVpi~~paGG 356 (471)
T COG3033 290 EECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGV-----NFDYLAH------R-VAQVQYLADGLEEA-GVPIVQPAGG 356 (471)
T ss_pred HHHHhheEeeccccccCcccchhHHHHHHHHHHhc-----CcHHHHH------H-HHHHHHHHHHHHhc-CCeeEecCCC
Confidence 4444432 1233444445555555553211 1122222 2 23456889999998 9989999999
Q ss_pred eEEeeecc--CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC--CCC--------CCcEEEEEec---CCcCc
Q 041151 371 MYSFPQIR--LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG--QKE--------GIFHLRTTIL---PAEED 435 (463)
Q Consensus 371 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~--~~~--------~~~~lRis~~---~~~e~ 435 (463)
--++++.. +|. +.+.++ ....++.++..+.||-..--..|. ..+ .-..+|+++. =+.+.
T Consensus 357 Havfvda~~~lph--ip~eqF----paqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~H 430 (471)
T COG3033 357 HAVFVDAGKFLPH--IPAEQF----PAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTH 430 (471)
T ss_pred ceEEeehhhhcCC--CChhhC----cHHHHHHHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhH
Confidence 88887653 231 111111 245667788999999887644442 211 1247999999 36678
Q ss_pred HHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDE 449 (463)
Q Consensus 436 i~~~~~~l~~~l~~ 449 (463)
++..++.++++.++
T Consensus 431 mD~V~~a~~~l~e~ 444 (471)
T COG3033 431 MDFVIEAFKALKEN 444 (471)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888776554
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-07 Score=86.94 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=100.6
Q ss_pred CCCcEEE---cCCcHHHHHHHHHHHhcCCCCEEEEc------------------------cCcee----cCCCcccChHH
Q 041151 129 DPELIFL---TDGASKGVMQTLNCVIRGEGDGVVLL------------------------FHTTW----KRQQIGVLIIN 177 (463)
Q Consensus 129 ~~~~i~~---t~G~~~al~~~~~~l~~~~gd~Vlvp------------------------~g~~~----~~~~~~~d~~~ 177 (463)
..|.-+| ..++|+||..++..++ .|||+.+.- +|+.. -.++..+|. +
T Consensus 68 gaE~ALVRpq~vSGTHAi~~~Lfg~L-rpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~-~ 145 (403)
T PF06838_consen 68 GAEDALVRPQFVSGTHAIALALFGVL-RPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDW-E 145 (403)
T ss_dssp T-SEEEEETTS-SHHHHHHHHHHHH---TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-H-H
T ss_pred CchhhhhcccccchHHHHHHHHHhcC-CCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCH-H
Confidence 3554444 2356999999999998 899998873 44444 455688999 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhC--CeEEEecccccccccCCCCCccchHHHHHh
Q 041151 178 DLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQE--NLVLLGDEVYQQNIYQDERPFVSSKKVLMD 254 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 254 (463)
.+++++++ ++|+|+|. +-..-+=..++.+++++++++.++. ++++++|..|.+|.- ...+...
T Consensus 146 ~i~~~~~~------~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE--~~EP~~v------ 211 (403)
T PF06838_consen 146 AIKKALKP------NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVE--TQEPTEV------ 211 (403)
T ss_dssp HHHHHHHT------TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTS--SS-GGGG------
T ss_pred HHHHhhcc------CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceecc--ccCcccc------
Confidence 99999997 89999998 7666677788999999999999875 899999999999754 2333222
Q ss_pred cCCCCCCCceEEEEecCCcccCCCCCc--eeEEEEecCCChhHHHHHHhhh
Q 041151 255 MGLPFSKEVQLVSFHTVSKGYWGECGQ--RGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 255 ~~~~~~~~~~~i~~~S~SK~~~g~~G~--R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
.. .++.+|+=|... .|+ -.||++ +.++++++.....
T Consensus 212 -----GA---Dl~aGSLIKNpG--GgiAptGGYIa---Gr~~lVe~~a~RL 249 (403)
T PF06838_consen 212 -----GA---DLMAGSLIKNPG--GGIAPTGGYIA---GRKDLVERAAYRL 249 (403)
T ss_dssp -----T----SEEEEETTSGGG--TTT-SS-EEEE---ESHHHHHHHHHHH
T ss_pred -----ch---hheeccceeCCC--CCccCcCCEEe---chHHHHHHHHhhh
Confidence 22 278999999873 343 379999 8999999886554
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6e-06 Score=78.50 Aligned_cols=311 Identities=11% Similarity=0.081 Sum_probs=180.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC--CCCHHHHHHHHHHHHH----hcCCCCCCC----cEEEcCCcHHHHHHHHHHHh
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS--RGIPGVRKEVAEFIER----RDGYPSDPE----LIFLTDGASKGVMQTLNCVI 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~~~~----~~g~~~~~~----~i~~t~G~~~al~~~~~~l~ 151 (463)
...+++++-..+.+. ...+|+.. .|-.+..+.+..+..+ -++ ++|+ +|..-+| +.|...+..+++
T Consensus 53 s~aVmeAlGS~ltNK--YSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~--ldp~kWGVNVQp~SG-SPANfavYtall 127 (477)
T KOG2467|consen 53 SRAVMEALGSCLTNK--YSEGYPGARYYGGNEYIDQIELLCQKRALEAFG--LDPEKWGVNVQPYSG-SPANFAVYTALL 127 (477)
T ss_pred HHHHHHHHhHHhhcc--cccCCCcccccCcchHHHHHHHHHHHHHHHHhC--CCHHHCceeeccCCC-CchhhHHHhhhc
Confidence 667788877766652 23344331 1223444444333222 234 4444 5555556 568999999998
Q ss_pred cCCCCEEEE---ccCcee-------------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCC
Q 041151 152 RGEGDGVVL---LFHTTW-------------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGN 203 (463)
Q Consensus 152 ~~~gd~Vlv---p~g~~~-------------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~N 203 (463)
+|++.|.- |.|+.+ .....-+|. |.||+..... ++|+|+--.-..
T Consensus 128 -~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDY-D~Le~~A~~f-----rPk~iiaG~SaY 200 (477)
T KOG2467|consen 128 -KPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDY-DKLEKTATLF-----RPKLIIAGTSAY 200 (477)
T ss_pred -CCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceeh-HHHHHHHHhc-----CCcEEEeccccc
Confidence 89998765 333222 334566899 9999988876 899876332222
Q ss_pred CCccCCCHHHHHHHHHHhhhCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCce
Q 041151 204 PTGQCLSEANLREILRFCYQENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282 (463)
Q Consensus 204 PtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R 282 (463)
+ ..+.- .++-++|.+.+.+++.|.+|-. ++- .+. .++.... ..||..|.+|++ -|-|
T Consensus 201 ~--R~~DY---aR~R~Iad~~gA~Lm~DMAHISgLVA-A~v-ipsPFey------------~DiVTTTTHKsL---RGPR 258 (477)
T KOG2467|consen 201 S--RLIDY---ARFRKIADKVGAYLMADMAHISGLVA-AGV-IPSPFEY------------CDIVTTTTHKSL---RGPR 258 (477)
T ss_pred h--hhccH---HHHHHHHHhcCceeehhhhhHHHHHh-ccc-CCCcccc------------cceeeccccccc---cCCc
Confidence 2 34444 4444555588999999999953 332 111 2232221 248889999987 5889
Q ss_pred eEEEEecCCChhH------------HHHHHh-hhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 041151 283 GGYFEMTNIPPKT------------VDEIYK-IAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRR 348 (463)
Q Consensus 283 ~G~~~~~~~~~~~------------~~~l~~-~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (463)
.|.+....+.+.. -+++.. +.. ...++......+++.+|+... ...|..|. .+..+|
T Consensus 259 g~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~--tpefk~Yq-------~qV~~N 329 (477)
T KOG2467|consen 259 GAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAM--TPEFKEYQ-------KQVLKN 329 (477)
T ss_pred ceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhC--CHHHHHHH-------HHHHHH
Confidence 9999875432221 122221 112 234444444555555665432 23444443 457888
Q ss_pred HHHHHHHhhcCCCcccccC-CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC--CCcEE
Q 041151 349 ARMMTDGFNSCRNVVCNFT-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE--GIFHL 425 (463)
Q Consensus 349 ~~~l~~~L~~~pg~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~--~~~~l 425 (463)
.+.|.+.|.+. |.+++.. ..+-.++++++ |.+. +...++..|+.-+|.+.--..+|... ..+.+
T Consensus 330 akala~~l~~~-Gy~lvtgGTDnHlvLvDLr-~~G~-----------dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGi 396 (477)
T KOG2467|consen 330 AKALASALISR-GYKLVTGGTDNHLVLVDLR-PKGV-----------DGARVEKVLELCHIALNKNTVPGDKSALSPGGI 396 (477)
T ss_pred HHHHHHHHHHc-CceEecCCccceEEEEecc-ccCC-----------chHHHHHHHHHhhhhhcCCcCCCCccccCCCce
Confidence 99999999988 8887643 33445555554 2221 44557788888888886444444311 12369
Q ss_pred EEEec--C----CcCcHHHHHHHHHHHHH
Q 041151 426 RTTIL--P----AEEDMPAIMESFKKFND 448 (463)
Q Consensus 426 Ris~~--~----~~e~i~~~~~~l~~~l~ 448 (463)
||... + .++|+++..+-|..+++
T Consensus 397 RiGtPAmTsRG~~e~df~~v~~fi~~av~ 425 (477)
T KOG2467|consen 397 RIGTPAMTSRGFGEEDFEKVADFIDRAVK 425 (477)
T ss_pred eccchhhcccCccHHHHHHHHHHHHHHHH
Confidence 99876 3 34566665555554443
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.5e-06 Score=80.34 Aligned_cols=205 Identities=16% Similarity=0.157 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHH-HHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRK-EVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~-~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
.+++++++......+. .. .|.-..|...-|- .++..+. +. ..++.+.++|+.+.++.+++.++. . +.+|++
T Consensus 40 ~~e~iea~~~~~~~~v-~L-e~~l~~g~~~~R~~~~~~~~~---~~-~~aea~~ivnnn~aAVll~~~al~-~-~~EvVi 111 (395)
T COG1921 40 SPEAIEAMKEAMRAPV-EL-ETDLKTGKRGARLTELAELLC---GL-TGAEAAAIVNNNAAAVLLTLNALA-E-GKEVVV 111 (395)
T ss_pred CHHHHHHHHHHhcccc-ee-eeecccchhhHHHHHHHHHHh---cc-cchhheeeECCcHHHHHHHHhhhc-c-CCeEEE
Confidence 7889999988777642 33 4444333322221 3333332 22 346789999999999999999996 4 555666
Q ss_pred c------------------cCcee--cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHH
Q 041151 161 L------------------FHTTW--KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 161 p------------------~g~~~--~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~ 219 (463)
. .|+++ ......... ..++.++.+ ++++++-. ++|.+--..++ .+++++
T Consensus 112 s~g~lV~gg~~~v~d~~~~aG~~l~EvG~tn~t~~-~d~~~AIne------~ta~llkV~s~~~~f~~~l~---~~~l~~ 181 (395)
T COG1921 112 SRGELVEGGAFRVPDIIRLAGAKLVEVGTTNRTHL-KDYELAINE------NTALLLKVHSSNYGFTGMLS---EEELVE 181 (395)
T ss_pred EccccccCCCCChhHHHHHcCCEEEEecccCcCCH-HHHHHHhcc------CCeeEEEEeecccccccccc---HHHHHH
Confidence 5 44444 233333566 889999998 88888766 44443223344 566777
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|+++++.+|+|.+-....- .-+.+...+ . .+-.+++.|-.|.| | |-+.|.++ |.+++++++
T Consensus 182 ia~~~~lpvivD~aSg~~v~----~e~~l~~~l-a-------~GaDLV~~SgdKll-g--GPqaGii~---GkKelI~~l 243 (395)
T COG1921 182 IAHEKGLPVIVDLASGALVD----KEPDLREAL-A-------LGADLVSFSGDKLL-G--GPQAGIIV---GKKELIEKL 243 (395)
T ss_pred HHHHcCCCEEEecCCccccc----cccchhHHH-h-------cCCCEEEEecchhc-C--CCccceEe---chHHHHHHH
Confidence 88899999999998765432 112232221 1 12248889999988 3 77789998 899999999
Q ss_pred Hhhhh-hcccCChHHHHHHHHhcC
Q 041151 300 YKIAS-IALSPNVPAQIFMGLMVN 322 (463)
Q Consensus 300 ~~~~~-~~~~~~~~~q~~~~~~l~ 322 (463)
++..- ..+.+......++.++|+
T Consensus 244 q~~~l~Ralrv~K~tla~l~~aLe 267 (395)
T COG1921 244 QSHPLKRALRVDKETLAALEAALE 267 (395)
T ss_pred HhhhhhhhhhcCcHhHHHHHHHHH
Confidence 88763 566777777777766663
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.5e-08 Score=92.88 Aligned_cols=248 Identities=16% Similarity=0.148 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHH-HHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVR-KEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr-~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
++++++++.+....+ ....|.-..|-.--| ..+.+.+.+. +.+|.-+++|+...|+.+++.++. +|.+|++
T Consensus 19 ~~~a~~a~~~~a~~Y--~nLE~dl~~G~Rg~R~~~v~~ll~~l----tgAeaA~VvNnnaAAv~L~l~~la--~~~EvIv 90 (367)
T PF03841_consen 19 SEEAIEAVAEVASGY--SNLEYDLETGKRGSRYAHVEELLCEL----TGAEAALVVNNNAAAVLLALNTLA--KGKEVIV 90 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc--cccccccccccccccccccccccccc----cccccccccccccccccccccccc--ccccccc
Confidence 778888888776653 223443322221111 1222232221 456788888888899999999996 6777887
Q ss_pred c------cC-------------cee--cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC-CHHHHHHHH
Q 041151 161 L------FH-------------TTW--KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL-SEANLREIL 218 (463)
Q Consensus 161 p------~g-------------~~~--~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~-s~~~l~~l~ 218 (463)
. .| +++ ......-.+ +++++++++ +|.+|+..+++|-.-.-+ ..-.+++++
T Consensus 91 sRGelVeiGgsFRip~vm~~sGa~lvEVGttN~t~~-~Dye~AI~e------~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~ 163 (367)
T PF03841_consen 91 SRGELVEIGGSFRIPDVMRQSGARLVEVGTTNRTHL-SDYEKAITE------NTAALLKVHTSNFRIQGFTGEVSLEELA 163 (367)
T ss_dssp -----------------------------------------------------------------------------HHH
T ss_pred cccccccccccccccccccccccccccccccccccc-ccccccccc------cccccccccccccccccccccccHHHHH
Confidence 6 22 222 111222345 778899988 899998888888743211 223588899
Q ss_pred HHhhhCCeEEEecccccccc----cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 219 RFCYQENLVLLGDEVYQQNI----YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
+++++|++++|+|-.-..+. |+ -..-+++... -..+-.+++.|=.|.+ |-|. .|.++ |.++
T Consensus 164 ~la~~~~lp~i~DlgsG~l~dl~~~g-l~~Ep~v~~~--------~~~GaDlV~fSGdKlL-GGPQ--aGiI~---Gkk~ 228 (367)
T PF03841_consen 164 ELAKEHGLPVIVDLGSGLLVDLSPYG-LPDEPTVQEY--------LAAGADLVTFSGDKLL-GGPQ--AGIIV---GKKE 228 (367)
T ss_dssp HHHHHHT--EEEE-TTHHHHHHHTT-----------C--------CCCT-SEEEEETTSSS-SS-S---EEEE---EEHH
T ss_pred HHHhhcCCcEEEECCCCCCcCccccc-CccccHHHHH--------hhcCCCEEEEECCCcC-CCCC--eEEEE---eCHH
Confidence 99999999999997763321 10 0111223222 2223348999999998 5444 79998 8999
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQ--FVRESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
+++++++..- ..+.+......++.+.|+.-...+...++ .++.+....+.++++.+.|...|...
T Consensus 229 lI~~lk~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 229 LIEKLKKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp HHHHHHHHHHTTT-B--HHHHHHHHHHHHH--------------------------------------
T ss_pred HHHHHhhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 9999987542 45667777776666655310000000000 11113334555666666666666553
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.6e-05 Score=68.94 Aligned_cols=320 Identities=11% Similarity=0.078 Sum_probs=177.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC--CcEEEcCCcHHHHHHHHHHHh--cCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP--ELIFLTDGASKGVMQTLNCVI--RGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~--~~~gd~ 157 (463)
.+.+++++...+.....+ ..-|...+.++-++... .-| +-++++|++++|..++++.-- ++-.|.
T Consensus 63 hp~VV~A~~kQmat~~tN---------~RFlhd~lv~cA~~l~s--tlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDv 131 (452)
T KOG1403|consen 63 HPEVVRAGAKQMATISTN---------NRFLHDELVQCARTLTS--TLPELSVCFFVNSGSEANDLALRLARNFTKHQDV 131 (452)
T ss_pred CHHHHHHHHHHHhHhccc---------chhhHHHHHHHHHHHhh--cCCCceEEEEecCCchhhHHHHHHHHhhcccCce
Confidence 778888886655542111 12233333333221111 223 367889999999999988642 145576
Q ss_pred EEEc--------------------------------------cCcee-----cCCC-cccChHHHHHHHHHHHHhcCCce
Q 041151 158 VVLL--------------------------------------FHTTW-----KRQQ-IGVLIINDLQQSVAQARSKGITV 193 (463)
Q Consensus 158 Vlvp--------------------------------------~g~~~-----~~~~-~~~d~~~~l~~~l~~~~~~~~~~ 193 (463)
|.+. ++++. +..+ ...-. +.+++.+++...++..+
T Consensus 132 ItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Ya-d~vk~I~~d~~~~g~gv 210 (452)
T KOG1403|consen 132 ITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYA-DPVKEICQDQLAKGQGV 210 (452)
T ss_pred EEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhh-hHHHHHHHHHHhcCCcH
Confidence 6665 11221 1111 11223 56777777766655555
Q ss_pred eEEEEECCCCCCccCCCHHH-HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 194 RAMVIINPGNPTGQCLSEAN-LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 194 ~~i~l~~p~NPtG~~~s~~~-l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
.+.+-.+-.+=-|.++++.. .+++++..+.++-..|.||+.-.|.- -+..+.++..+ ++ +--|.++.
T Consensus 211 AAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGR-vG~hyWafq~y--~f---------iPDIVtmg 278 (452)
T KOG1403|consen 211 AAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGR-VGSHYWAFQTY--NF---------IPDIVTMG 278 (452)
T ss_pred HHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccc-cchhhhhhhhh--cc---------ccchheec
Confidence 55544455666677777764 68888888889999999999877432 12222222211 11 12235788
Q ss_pred cccCCCCCceeEEEEecCCChhHHHHHHhhh--h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 041151 273 KGYWGECGQRGGYFEMTNIPPKTVDEIYKIA--S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRA 349 (463)
Q Consensus 273 K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (463)
|.+ | .|..++.++ ..+++.+++..-. . .+++.++.+-++..+.|+- -+.+.+..+-++.-
T Consensus 279 Kpm-G-NGhPVa~Va---ttkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v------------~e~E~Lq~ha~~vG 341 (452)
T KOG1403|consen 279 KPM-G-NGHPVAAVA---TTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRV------------CEDENLQEHAQQVG 341 (452)
T ss_pred ccC-C-CCCeeeEEe---ccHHHHHHhccccceehhccCCCchhHHHHHHHHHH------------HhhhhHHHHHHHHH
Confidence 999 5 899999999 4899999997632 1 4788899988888887742 11223344444444
Q ss_pred HHHHHHhhcCC-CcccccC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHH-HHHHhcCeEeeCCCCCCCCCCCcEE
Q 041151 350 RMMTDGFNSCR-NVVCNFT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL-RLLEATGISTVPGSGFGQKEGIFHL 425 (463)
Q Consensus 350 ~~l~~~L~~~p-g~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~gI~v~pg~~f~~~~~~~~l 425 (463)
++|...|..+. ...++.. ..|+|+=+++- . |..++......+.++. ++-+.++|++..-. ++.+-+
T Consensus 342 ~~L~~lL~~~k~kh~~IGDvRGvGLFiGIdLV--k---D~~tRtP~tk~A~~~v~rlke~y~VLlsaDG-----Ph~Nil 411 (452)
T KOG1403|consen 342 EKLEVLLRRLKQKHECIGDVRGVGLFIGIDLV--K---DRKTRTPDTKEAHWVVNRLKELYRVLLSADG-----PHRNIL 411 (452)
T ss_pred HHHHHHHHHHhhhccceeccccceEEEeeeee--c---ccccCCCcHHHHHHHHHHHHHhhhEEEecCC-----CCCcee
Confidence 45555554431 2233322 23455544331 1 1112211111233333 33444568776521 344456
Q ss_pred EEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 426 RTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 426 Ris~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.|-.. -++++.++.+..|.+++.-..+
T Consensus 412 KiKPPmCFneena~e~v~~ld~iLT~mee 440 (452)
T KOG1403|consen 412 KIKPPMCFNEENADEFVLGLDEILTVMEE 440 (452)
T ss_pred ecCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence 66555 4667888888888777764433
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00031 Score=76.78 Aligned_cols=251 Identities=9% Similarity=0.083 Sum_probs=140.0
Q ss_pred CCCCcEEEcCCcHHHHHHHHHHHh--cCCCCEEEEccCcee----------cCCCc---ccChHHHHHHHHHHHHhcCCc
Q 041151 128 SDPELIFLTDGASKGVMQTLNCVI--RGEGDGVVLLFHTTW----------KRQQI---GVLIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 128 ~~~~~i~~t~G~~~al~~~~~~l~--~~~gd~Vlvp~g~~~----------~~~~~---~~d~~~~l~~~l~~~~~~~~~ 192 (463)
.+..|.-+..+++.+.+.++.+.- ++++++|+++....+ ...++ .+|. +.|++.+ +
T Consensus 124 m~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~~-~~l~~~~--------~ 194 (939)
T TIGR00461 124 LPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVDC-SDIKKAV--------D 194 (939)
T ss_pred CChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEcH-HHHhhcC--------C
Confidence 555677777788877777766642 123478999722222 11111 1255 5554433 3
Q ss_pred eeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
+.++++.+||. .|.+. ++++|++++++++.+++++.--..+.. ..+... + +. .|++++-
T Consensus 195 ~~~v~~q~Pn~-~G~ie---d~~~i~~~~h~~gal~~~~ad~~al~l-----l~~Pge----~----Ga---Di~vg~~- 253 (939)
T TIGR00461 195 VFGCLLQYPAT-DGSIL---DYKQLIDALHSHKSLVSVAADLMALTL-----LTPPGH----Y----GA---DIVLGSS- 253 (939)
T ss_pred EEEEEEECCCC-CeEEe---cHHHHHHHHHHcCCEEEEEechHHhCC-----cCCHHH----c----CC---cEEeeCC-
Confidence 56778889987 79885 588899999999999998543322211 112211 1 22 2454433
Q ss_pred cccCCC----CCceeEEEEecCCChhHHHHHH----------------------------hhhh-hcccCChHHHHHHHH
Q 041151 273 KGYWGE----CGQRGGYFEMTNIPPKTVDEIY----------------------------KIAS-IALSPNVPAQIFMGL 319 (463)
Q Consensus 273 K~~~g~----~G~R~G~~~~~~~~~~~~~~l~----------------------------~~~~-~~~~~~~~~q~~~~~ 319 (463)
|.| |+ .|--.|++.+ .+++.+.+- +.+. .+++++....+.++.
T Consensus 254 q~f-g~p~g~GGP~aG~~a~---~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~ 329 (939)
T TIGR00461 254 QRF-GVPMGYGGPHAAFFAV---KDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVAS 329 (939)
T ss_pred Ccc-CCCCCCCCCceeeeee---cHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHH
Confidence 334 33 1333677764 444443320 0000 011111111111111
Q ss_pred hcCCCCCCCchHHHH-HHH-HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHH
Q 041151 320 MVNPLKPGDISYEQF-VRE-SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVF 397 (463)
Q Consensus 320 ~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (463)
+ |..+ -.+ ++++.++...+..++.+.|.+. |+++..+ .||--+.++++.. +..+
T Consensus 330 ~----------Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~--~fF~~~~v~~~~~-----------~~~~ 385 (939)
T TIGR00461 330 S----------YCVYHGPKGLKNIARRIHSLTSILANGLEND-PHELINK--TWFDTLTVKVGNG-----------ISSE 385 (939)
T ss_pred H----------HHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CccceEEEEeCCC-----------CHHH
Confidence 1 1111 122 5567777888888999999885 8887655 4554433444311 1233
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHH
Q 041151 398 YCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 398 ~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~ 444 (463)
+.+.+.++||.++.. ..+.+++|+. ++.+|++.+++.+.
T Consensus 386 -i~~~~~~~gi~l~~~-------~~~~i~~s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 386 -LLKAAEEFNINLRAV-------DTTTVGIALDETTTKADVENLLKVFD 426 (939)
T ss_pred -HHHHHHHCCCeeeec-------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence 455677789997651 1236999999 88899999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.32 E-value=9e-05 Score=72.45 Aligned_cols=288 Identities=13% Similarity=0.111 Sum_probs=151.8
Q ss_pred HhcCCCCCCCcEEEcCCcHH-HHHHHHHHHh-cCCCCEEEEc-------------cCcee-------cCCCcccChHHHH
Q 041151 122 RRDGYPSDPELIFLTDGASK-GVMQTLNCVI-RGEGDGVVLL-------------FHTTW-------KRQQIGVLIINDL 179 (463)
Q Consensus 122 ~~~g~~~~~~~i~~t~G~~~-al~~~~~~l~-~~~gd~Vlvp-------------~g~~~-------~~~~~~~d~~~~l 179 (463)
+..|++ +....++.+.++. .+.+++.++- +..++.|+.| +|.++ ..+....|. +.+
T Consensus 67 ~~~G~~-~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l~td~-~~i 144 (389)
T PF05889_consen 67 RLAGLR-SVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDELITDL-EAI 144 (389)
T ss_dssp HHTTHT-THCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEEEEHH-HHH
T ss_pred HHcCCc-cccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCeeeccH-HHH
Confidence 344654 2345666665543 4455555552 2567888888 77766 233444566 889
Q ss_pred HHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCC
Q 041151 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259 (463)
Q Consensus 180 ~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++.+++. |+...+.++++++---+... +++++|+++|++||+..|+..||.. +...........-..
T Consensus 145 e~~i~~~---G~~~iLcvltttscfapr~~--D~i~~IakiC~~~~IPhlvNnAYgv----Q~~~~~~~i~~a~~~---- 211 (389)
T PF05889_consen 145 EAKIEEL---GADNILCVLTTTSCFAPRLP--DDIEEIAKICKEYDIPHLVNNAYGV----QSSKCMHLIQQAWRV---- 211 (389)
T ss_dssp HHHHHHH---CGGGEEEEEEESSTTTTB------HHHHHHHHHHHT--EEEEGTTTT----T-HHHHHHHHHHHHH----
T ss_pred HHHHHHh---CCCCeEEEEEecCccCCCCC--ccHHHHHHHHHHcCCceEEccchhh----hHHHHHHHHHHHHhc----
Confidence 9988764 33456667775544444432 4699999999999999999999985 211111111111111
Q ss_pred CCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 041151 260 SKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRES 338 (463)
Q Consensus 260 ~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 338 (463)
+. -.+++-|.-|-|- -+...+.+.. .++..+..+.+... ..+..+......-...| +...|...+.++
T Consensus 212 GR--vda~vqS~dkNF~--VPvGgai~As--~~~~~i~~vs~~YpGRas~sp~ld~~itLl~L-----G~~g~~~ll~~r 280 (389)
T PF05889_consen 212 GR--VDAFVQSTDKNFM--VPVGGAIMAS--FDPSGILAVSKEYPGRASASPSLDLFITLLSL-----GCTGYGALLKER 280 (389)
T ss_dssp ST--CSEEEEEHHHHHC--EESSHEEEEE--SSHHHHHHHHHTSHSHBTSHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred CC--cceeeeecCCCEE--ecCCCcEEEe--cCHHHHHHHHHHhhhhhhcccchHHHHHHHHH-----hhhHHHHHHHHH
Confidence 12 1268899999983 4444455553 46788888887765 33333333333333332 123344555555
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEeeecc-CChhhHHHHhhcCCCChHHHHHHHHHhcCeE----eeC
Q 041151 339 KGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFPQIR-LPPKAIEAAKRAGKVPDVFYCLRLLEATGIS----TVP 412 (463)
Q Consensus 339 ~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~----v~p 412 (463)
......++++.+.+.+..++ .+. .|.....+.+.++ ++.. ...+..++...|..+||. |.|
T Consensus 281 ~~~f~~l~erl~~~aee~~e----~ll~~p~N~is~a~tl~~l~~~---------~~k~~~~lgs~Lf~R~VsG~RvV~~ 347 (389)
T PF05889_consen 281 KASFPYLKERLKKWAEEVGE----RLLETPRNHISMAFTLDTLYEI---------SQKDGTFLGSMLFKRGVSGIRVVTP 347 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTE----EBSSSTT-SSEEEEE-TTCCTC---------CSSHHHHHHHHHHHTTEESSEEEET
T ss_pred HHHHHHHHHHHHHHHHHhhh----hhcCCCCCCeeEEEECccchhh---------ccchhhhHHHHHHhCCcccceeecc
Confidence 55555555555444444433 222 2333333333333 1110 012445667778888874 333
Q ss_pred CCCCCCC----CCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 413 GSGFGQK----EGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 413 g~~f~~~----~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
+..+... -...|+-++.+ .+.||++.++++|+++++
T Consensus 348 ~~~~~tsh~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~ 389 (389)
T PF05889_consen 348 GGKKQTSHSSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK 389 (389)
T ss_dssp SSCEEETTSS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 3333221 01247888555 899999999999998874
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.3e-05 Score=70.39 Aligned_cols=167 Identities=16% Similarity=0.248 Sum_probs=113.8
Q ss_pred CCCccCC-CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----------------
Q 041151 99 GLGAYSD-SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------------- 161 (463)
Q Consensus 99 ~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------------- 161 (463)
...+|+- .-|...|..-.|+-++. ....-+..+.+| +.||..++..++ .|||+.+.-
T Consensus 56 ~stGYGydD~GRdtLe~vyA~vf~a----E~a~VRpq~isG-THAI~~aLfg~L-RpgDell~i~G~PYDTLeevIG~rg 129 (416)
T COG4100 56 GSTGYGYDDLGRDTLERVYAQVFGA----EAALVRPQIISG-THAIACALFGIL-RPGDELLYITGSPYDTLEEVIGLRG 129 (416)
T ss_pred CCCCCCccccchhHHHHHHHHHhcc----ccceeeeeeecc-hhHHHHHHHhcc-CCCCeEEEecCCcchhHHHHhccCC
Confidence 3445543 23555666666666652 111124456666 789999999998 899998763
Q ss_pred --------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhC--Ce
Q 041151 162 --------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQE--NL 226 (463)
Q Consensus 162 --------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~--~~ 226 (463)
+|+.. -..+..+|. +.++..+++ ++|+|.+. +...-.=-.++.+++++++++.++- |+
T Consensus 130 ~~~gSL~dfgi~Y~~v~Lt~~gkiD~-~~v~~~i~~------~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ 202 (416)
T COG4100 130 EGQGSLKDFGIKYKAVPLTADGKIDI-QAVKTAISD------RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNV 202 (416)
T ss_pred CCcccHHHhCcceeecccccCCcccH-HHHHHhcCc------cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCE
Confidence 33333 334678999 999999998 89999887 5444334457889999999998875 89
Q ss_pred EEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCce--eEEEEecCCChhHHHHH
Q 041151 227 VLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR--GGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 227 ~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R--~G~~~~~~~~~~~~~~l 299 (463)
++++|..|.+|.-. ..+... .. .+..+|+=|.- | .|+- .||++ +..+++++-
T Consensus 203 ivFVDNCYGEFvE~--~EPt~v-----------Ga---DliAGSLIKNp-G-GgiaktGGYia---Gk~~~ve~~ 256 (416)
T COG4100 203 IVFVDNCYGEFVEE--KEPTHV-----------GA---DLIAGSLIKNP-G-GGIAKTGGYIA---GKAELVEAA 256 (416)
T ss_pred EEEEeccchhhhhc--cCcccc-----------ch---hhhccceeeCC-C-Cceeeccceee---chHHHHHhh
Confidence 99999999998652 222221 11 26778999976 3 3332 58888 777877765
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0018 Score=68.21 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=99.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC----C---
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG----E--- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----~--- 154 (463)
++.++-.+...+-+ .+...|-.+.+...+.+++-+++.+..|.+- +..+ +|+|++++...++.+-- + |
T Consensus 96 ~paila~~~a~~~N--~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~-~~G~-~TsGGT~ANl~aL~~AR-~~k~~p~a~ 170 (608)
T TIGR03811 96 MPAILAYNYAMLWN--GNNVAYESSPATSQMEEEVGKEFATLMGYKN-GWGH-IVADGSLANLEGLWYAR-NIKSLPFAM 170 (608)
T ss_pred HHHHHHHHHHHHhC--CCCCccccCchHHHHHHHHHHHHHHHhCCCC-CCeE-EeCChHHHHHHHHHHHH-Hhhhccchh
Confidence 45555444444433 2334443344668999999999999988753 3345 67788887775544321 1 0
Q ss_pred ---------------------------------------------C------CEEEEc-------------cCce-----
Q 041151 155 ---------------------------------------------G------DGVVLL-------------FHTT----- 165 (463)
Q Consensus 155 ---------------------------------------------g------d~Vlvp-------------~g~~----- 165 (463)
| ..|++| .|.-
T Consensus 171 ~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv 250 (608)
T TIGR03811 171 KEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVI 250 (608)
T ss_pred hhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEE
Confidence 0 046666 3331
Q ss_pred e--cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCe--EEEeccccccc
Q 041151 166 W--KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENL--VLLGDEVYQQN 237 (463)
Q Consensus 166 ~--~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~--~vi~Deay~~~ 237 (463)
. .+.++.+|+ +.|++.+++..++|..+-+|+-+-....+|.+=+.+++.+|++.++++++ |+.+|.+|+.+
T Consensus 251 ~VpvD~~~rmd~-~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~ 325 (608)
T TIGR03811 251 PVPVDSNYRMDI-NELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGY 325 (608)
T ss_pred EeecCCCCcCCH-HHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccch
Confidence 1 456789999 99999999876666555667777888899999775555555554577887 69999999874
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0043 Score=59.85 Aligned_cols=299 Identities=15% Similarity=0.116 Sum_probs=159.3
Q ss_pred CCCcHHHHHHHHHHhhhcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcC-CcHHHHHHHHHHH
Q 041151 79 IVFPADAIARAKHYLSLTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTD-GASKGVMQTLNCV 150 (463)
Q Consensus 79 ~~~p~~~~~a~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~-G~~~al~~~~~~l 150 (463)
+.+|+.+++.+.+.+.+..+ .+++- ..-...+-+...+.+++.+++| .+ .|++.. |++.....+...|
T Consensus 14 a~lp~~vL~~a~~e~~~~~g--~g~svme~SHRsk~~~~v~~~a~~~lreLl~iP--d~Y~VlflqGGat~qf~~~p~nL 89 (365)
T COG1932 14 AALPPEVLQQAQKELLDWNG--LGMSVMEISHRSKEFKNVLEEAEKDLRELLNIP--DDYKVLFLQGGATGQFAMAPMNL 89 (365)
T ss_pred ccCCHHHHHHHHHHHhhhcc--CCcceeeeccccHHHHHHHHHHHHHHHHHhCCC--CCceEEEEcCccHHHHHHHHHhh
Confidence 34588998888776666422 11111 1111234444444555555654 44 666655 6688888888888
Q ss_pred hcCCCCE--EEEc------------cCc--ee-----cC--CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 151 IRGEGDG--VVLL------------FHT--TW-----KR--QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 151 ~~~~gd~--Vlvp------------~g~--~~-----~~--~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
+ .+... |..- .+. .+ .. .+.-+++ +.+. +.+ +..-|++|.-+.-+|+
T Consensus 90 l-~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~-~~~~--~~~------~~ayv~~~~NeTi~Gv 159 (365)
T COG1932 90 L-GKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDL-SKWD--FSD------NDAYVHFCWNETISGV 159 (365)
T ss_pred h-cccCceeEeeeehhHhHHHHHHHhcccccccccceeccCccCCCCh-hhcc--cCC------CccEEEEecCCcccce
Confidence 7 55443 3332 221 11 11 1222333 3322 111 2333666755566677
Q ss_pred CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 208 CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 208 ~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
-++. ...+. .+.++++|-+-..+. ...++..+ -++..|..|.+ |..| ++.++
T Consensus 160 ~v~~--~p~~~-----~~~~~v~D~SS~ils-----r~iDvsk~-------------dviyagaQKnl-GpaG--ltvvI 211 (365)
T COG1932 160 EVPE--LPDIG-----SDGLLVADASSAILS-----RPIDVSKY-------------DVIYAGAQKNL-GPAG--LTVVI 211 (365)
T ss_pred EccC--CCCCC-----CCceEEEecccHHhc-----CCCChhHc-------------ceEEEehhhcc-Cccc--eEEEE
Confidence 6652 11111 127888887765532 12334332 26669999999 8888 78888
Q ss_pred ecCCChhHHHHHHhh-hh----------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH---HHHHHHHHHHHHHHHH
Q 041151 288 MTNIPPKTVDEIYKI-AS----------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE---SKGILESLRRRARMMT 353 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~-~~----------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~ 353 (463)
+ ++++++++... .. ...+-+.+...+...+. ..-+|++. ++.+.++-+++.+.|+
T Consensus 212 v---r~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~--------lv~~Wlk~~GGl~~~~~rn~~ka~~LY 280 (365)
T COG1932 212 V---RPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLG--------LVFKWLKSQGGLEALEARNQAKAQLLY 280 (365)
T ss_pred E---cHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHH--------HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6 88888887654 10 12333344433333221 11124433 4667778888899999
Q ss_pred HHhhcCCCcc--cccC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 354 DGFNSCRNVV--CNFT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 354 ~~L~~~pg~~--~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+.+.+- ++- .+.+ ...+.+.+++. ...+ +..++. .++++|+...-|..- . +.+|+|+
T Consensus 281 ~~id~s-~fy~~~v~~~~RS~mnV~f~~~--~~~l----------d~~fv~-eae~~gl~~lkGhr~----v-gGmRasi 341 (365)
T COG1932 281 DWIDKS-DFYRNLVAKANRSRMNVTFTLV--DAEL----------DKGFVA-EAEAAGLIYLKGHRS----V-GGLRASI 341 (365)
T ss_pred HHHHhC-CccccccchhhccceeEEEEcC--cHHH----------HHHHHH-HHHHcCCceeccccC----C-Cceeeee
Confidence 999876 322 1222 33444443333 2111 455554 466778877776321 1 2399999
Q ss_pred c--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
- .+.++++. |.++++.+.+.
T Consensus 342 ynA~~~e~vea----L~~fm~~f~~~ 363 (365)
T COG1932 342 YNAVPLEDVEA----LTDFMDWFEET 363 (365)
T ss_pred ecCCCHHHHHH----HHHHHHHHHHh
Confidence 9 45555554 44555554443
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0016 Score=64.49 Aligned_cols=293 Identities=13% Similarity=0.150 Sum_probs=162.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cC-CC---CEEEEc-------------cCcee-
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RG-EG---DGVVLL-------------FHTTW- 166 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~-~g---d~Vlvp-------------~g~~~- 166 (463)
+...+.+++-+++...++-+ ..+-=..|.|+++++..+-...- .. .| ..+++| .++++
T Consensus 117 ~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~ 195 (491)
T KOG1383|consen 117 VVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELR 195 (491)
T ss_pred hhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEE
Confidence 34556666666665555544 11222356788888555444331 11 12 234444 33333
Q ss_pred ----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh-CCeEEEecccccccccCC
Q 041151 167 ----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ-ENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 167 ----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~-~~~~vi~Deay~~~~~~~ 241 (463)
....+.+|+ ..+.+.+++ ++..++.+-|+-|+|.+ +.+++|.+++.+ +++.+-+|.+-..|...-
T Consensus 196 ~V~~~~~~~~~D~-~k~~~~i~e------Nti~lv~~~~~~p~G~~---e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~ 265 (491)
T KOG1383|consen 196 EVPLDEGDYRVDP-GKVVRMIDE------NTIMLVGSLPNFPTGEI---EDVEKLADLLLEIWDIPIHVDACLGGFINPA 265 (491)
T ss_pred eeeccccceEecH-HHHHHHhcc------ceEEEEEEcCCCCccch---hhHHHHHHHHHHHhCCceeecccCccccccc
Confidence 457899999 999999998 89999999999999988 778888888888 999999999987765410
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH-HHH-------hhh-hhcccCChH
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD-EIY-------KIA-SIALSPNVP 312 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~-~l~-------~~~-~~~~~~~~~ 312 (463)
.. .....+ +++ .....-|. .+-+|.=+.++| .||++. .++++.. .+. ... +.+...|..
T Consensus 266 ~~--~~~~~f--dFr---~p~V~Sis-a~~HKYGl~~~G--~~~vl~--r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~ 333 (491)
T KOG1383|consen 266 GY--LNEEEF--DFR---VPGVTSIS-ADGHKYGLAPAG--SSWVLY--RNKELLPHQLFFHTDWLGGIYASPTLNGSRP 333 (491)
T ss_pred cc--cCcccc--ccC---CCCceeEe-eccceeeeeecC--cEEEEE--cccccccceEEEeccccCccccCcccccCCc
Confidence 00 011000 111 11111122 223453114455 899987 4554432 221 111 112233333
Q ss_pred HHHHH---HHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHh
Q 041151 313 AQIFM---GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 313 ~q~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
+-.++ +.++.- +.+ .|. +..+...+....|++.+++.+++.+.. |.-++.+|-.-.+
T Consensus 334 g~~va~~wa~~~~l---G~e---GY~----~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~--------- 394 (491)
T KOG1383|consen 334 GSQVAAQWAALMSL---GEE---GYR----ENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDV--------- 394 (491)
T ss_pred ccHHHHHHHHHHHh---hHH---HHH----HHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCcc---------
Confidence 22222 222221 111 222 233446677788899999887887764 4444444411111
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
+.-.+..+|.+.|..+.. ..|.. .+-+++. ..++--++++..|++++++++...
T Consensus 395 ------~i~elsd~l~~~GW~lna-lq~P~-----a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p 451 (491)
T KOG1383|consen 395 ------NIFELSDLLRKKGWILNA-LQFPA-----AIHICVTRVHAREDVADRFVADIRKVVEELKSLP 451 (491)
T ss_pred ------chhhhhHHHHhcCcCccc-cCCCC-----ceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCC
Confidence 223356778888986543 33332 1333433 333335788888899988887643
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0029 Score=62.17 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=90.2
Q ss_pred CCCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHH--HHHHHHhcCCC----CEEEEc------
Q 041151 99 GLGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVM--QTLNCVIRGEG----DGVVLL------ 161 (463)
Q Consensus 99 ~~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~--~~~~~l~~~~g----d~Vlvp------ 161 (463)
..+.|.| .+|+.++...+.+|+.+--|. +.|-+ .+|++.=.. ++++......| +++++|
T Consensus 94 ~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~----DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGT 169 (496)
T COG1003 94 NIHPFQPEEQVQGYLELIYELQEWLKEITGM----DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGT 169 (496)
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHhcCC----ceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCC
Confidence 4566665 568889999999999876443 33443 345433222 22333322333 689998
Q ss_pred -------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ ..++..+|+ +.|++.+.+ ++.++.|+|||. .|.. ++.+.+|+++..++|..|..
T Consensus 170 NPASAam~G~~VV~V~~~~~G~VDl-ddLk~k~~~------~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~Gg~vY~ 239 (496)
T COG1003 170 NPASAAMAGFKVVVVKCDENGNVDL-DDLRAKAED------NLAALMITNPST-LGVF--EEDIREICEIVHEAGGQVYY 239 (496)
T ss_pred ChhhHhhcCceEEEEecCCCCCccH-HHHHHHhcc------ceeEEEeccCcc-cccc--hhhHHHHHHHHHHcCCEEEe
Confidence 55555 567888999 999999997 899999999986 3543 57899999999999999999
Q ss_pred ccccccccc
Q 041151 231 DEVYQQNIY 239 (463)
Q Consensus 231 Deay~~~~~ 239 (463)
|-+...-..
T Consensus 240 DGANlNA~v 248 (496)
T COG1003 240 DGANLNAIV 248 (496)
T ss_pred cCcchhhhh
Confidence 998765444
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00044 Score=65.83 Aligned_cols=221 Identities=13% Similarity=0.162 Sum_probs=127.7
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
.+ +++|+.|.+..++...+-+|++.--+.--| .-.|++-.++|.+++++|++..|+||+.....-+ ..+.+.
T Consensus 254 Cl-~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaT-----Gk~WaH- 326 (484)
T KOG1405|consen 254 CL-AEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGAT-----GKFWAH- 326 (484)
T ss_pred HH-HHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCcc-----Cceeee-
Confidence 34 677788887765554566666553344444 4568899999999999999999999998764321 122211
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH-HHhhhhhcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE-IYKIASIALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
++.++ +. -.-+.+|||-| - +| ||.. +++++.. -.++.+ +|+..+.-...+..+++
T Consensus 327 ehw~l--~~---PpD~vTFSKK~-q-~g---Gffh----~~~frpn~pYrifN-TWmGdP~k~lll~~vv~--------- 382 (484)
T KOG1405|consen 327 EHWNL--DS---PPDVVTFSKKF-Q-TG---GFFH----DEEFRPNEPYRIFN-TWMGDPSKNLLLEEVVQ--------- 382 (484)
T ss_pred hhcCC--CC---Cccceehhhhh-h-cC---cccc----CcccCCCchHHHhh-hhcCChHHHHHHHHHHH---------
Confidence 11111 11 12346899988 3 33 5665 5555432 233333 56555555555555442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC-cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhc
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSC----RN-VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEAT 406 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 406 (463)
.+ ..+.+.+..+..-++|.+.|.++ || +.-....|.|..| ..|.+. -.+.....++-+
T Consensus 383 --~I-~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~---d~ps~~-----------~Rdk~i~~~~~n 445 (484)
T KOG1405|consen 383 --EI-KREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAW---DCPSGS-----------IRDKLILIARLN 445 (484)
T ss_pred --HH-hHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEE---eCCChH-----------HHHHHHHHHHHc
Confidence 11 12345555556666777776653 54 3334556777666 555432 122334556777
Q ss_pred CeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 407 GISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 407 gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
||.+-. ||. ..+|+-.+ -.+...+.+++++.+.+..
T Consensus 446 Gv~~GG---Cg~----~siRfRPsLvf~~~Ha~i~l~~~~k~l~~ 483 (484)
T KOG1405|consen 446 GVNLGG---CGD----KSIRFRPSLVFRKHHADIFLDIFDKILAG 483 (484)
T ss_pred Cceecc---ccc----ceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence 887633 443 24666666 4556677888888877653
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0091 Score=60.00 Aligned_cols=266 Identities=15% Similarity=0.184 Sum_probs=123.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cCCCCEEEEc-----------------cCcee
Q 041151 106 SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RGEGDGVVLL-----------------FHTTW 166 (463)
Q Consensus 106 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~~gd~Vlvp-----------------~g~~~ 166 (463)
++|..+.--++..++.+.-|.+ ..+.-+-.|++.+-..++.+.- +..+++|++| .|.++
T Consensus 105 sQG~Lq~lfe~Qs~i~eLTGmd--vaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~i 182 (429)
T PF02347_consen 105 SQGRLQALFEYQSMICELTGMD--VANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEI 182 (429)
T ss_dssp BHHHHHHHHHHHHHHHHHHTSS--EE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCC--ccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEE
Confidence 4455444444555555554543 3344566677766666555432 1334689998 34444
Q ss_pred ---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCC
Q 041151 167 ---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243 (463)
Q Consensus 167 ---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~ 243 (463)
+.+..+.+ + .+ ++.+|++.+||. .|.+-+ +++|.+++++++.++++ -+.-. .. ..-
T Consensus 183 v~~~~~~~~~~--d------~~------~~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~gal~~~-~ad~~-aL-~~l 241 (429)
T PF02347_consen 183 VEVPLDEDGTT--D------DD------DTAAVMVQNPNT-FGVFED---IKEIADIAHAAGALVIV-GADPN-AL-GGL 241 (429)
T ss_dssp EEE-BBTTCSB---------ST------TEEEEEEESS-T-TSB--T---HHHHHHHHHHTT-EEEE-CGGCC-GC-CTC
T ss_pred EEecccccCCc--c------cc------CeEEEEeecCCC-CceEee---HHHHHHHHHHcCCEEEE-ecCHH-HH-hCc
Confidence 21211111 1 12 799999999997 688844 88999999999988886 33321 11 111
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC----CceeEEEEecCCChhHHHHH--------------------
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC----GQRGGYFEMTNIPPKTVDEI-------------------- 299 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~----G~R~G~~~~~~~~~~~~~~l-------------------- 299 (463)
.+.. ++ +.+ |++++ +|.| |.| |=-.|++.+ ..+++..+
T Consensus 242 --~~Pg----e~----GAD---I~vg~-~Q~f-g~p~~~GGP~~G~~a~---~~~l~r~lPGRiVG~t~D~~G~~~~~lt 303 (429)
T PF02347_consen 242 --KSPG----EY----GAD---IVVGE-HQTF-GIPMGFGGPGAGFFAV---REDLVRQLPGRIVGQTKDADGKRAFVLT 303 (429)
T ss_dssp ----GG----GG----T-S---EEEEC-CTTT-T---CCC-S--EEEEE----GGGGGGS-S-EEEEEEBCCCSCCEEEE
T ss_pred --CChh----hc----Ccc---EEeeC-CCCC-cccCCCCCCCeeeEEE---hhhhhhhCCCceecccccccccceeeec
Confidence 1111 12 222 55666 7877 432 333788875 44444432
Q ss_pred --------Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHH-H-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 041151 300 --------YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQF-V-RESKGILESLRRRARMMTDGFNSCRNVVCNFTE 368 (463)
Q Consensus 300 --------~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~ 368 (463)
++.+. ..++++......++.+ |..+ - +=++++.+...++..++.+.|.+..+..+. .
T Consensus 304 LqtREQHIrReKAtSNIctnqaL~A~~a~~----------Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~--~ 371 (429)
T PF02347_consen 304 LQTREQHIRREKATSNICTNQALLALAAAI----------YLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFD--N 371 (429)
T ss_dssp -GGGTCHHHGCCSTT---SS-HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSS--S
T ss_pred cccccccccccchhhhhhhhHHHHHHHHHH----------HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC--C
Confidence 11111 1233333222211111 1111 1 226778888999999999999986344433 2
Q ss_pred ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHH
Q 041151 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESF 443 (463)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l 443 (463)
..||=++....+ + ..+.+ +.+.++.-- -.+.. ...+.+-+|+. .+.+||+.+++.|
T Consensus 372 ~~f~e~v~~~~~--------------~-~~~~~-l~~~~~~~g--l~~~~-~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 372 PFFFEFVVVFSK--------------D-KEVEE-LLKRGIEGG--LNLRY-PDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp SSBSSEEEEESS----------------HHHHH-HHHTT------EEEGG-G-SSEEEEE--TT--HHHHHHHHH--
T ss_pred CCceeeeeecCC--------------c-HHHHH-HHHHHHhcC--CCccc-cCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 334333222221 1 11222 223333321 12221 12337788888 6778888887754
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00077 Score=61.66 Aligned_cols=293 Identities=12% Similarity=0.153 Sum_probs=148.7
Q ss_pred hcCCCCCCCcEEEcCCcHHHHHHHHHHHh-cCCC-CEEEEc-------------cCcee-------cCCCcccChHHHHH
Q 041151 123 RDGYPSDPELIFLTDGASKGVMQTLNCVI-RGEG-DGVVLL-------------FHTTW-------KRQQIGVLIINDLQ 180 (463)
Q Consensus 123 ~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~~g-d~Vlvp-------------~g~~~-------~~~~~~~d~~~~l~ 180 (463)
..|+..-++.+++---+.-.+.+++..+- +.|. .-|+.+ +|.++ ..+..--|+ +.++
T Consensus 69 l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdl-eav~ 147 (432)
T KOG3843|consen 69 LAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDL-EAVE 147 (432)
T ss_pred HhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhH-HHHH
Confidence 44665555655554333335667777664 1343 334444 66665 223334577 8888
Q ss_pred HHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCC
Q 041151 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFS 260 (463)
Q Consensus 181 ~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
..+++. ....|+...-....=..-+++.+++|+.+|..|++.-|+..+|.. .........+...+. +
T Consensus 148 ~~iee~-----g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnaygl----qsee~i~~iaa~~~~----g 214 (432)
T KOG3843|consen 148 AIIEEL-----GEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGL----QSEECIHKIAAAAEC----G 214 (432)
T ss_pred HHHHHh-----CCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhcccccc----chHHHHHHHHHHhhh----c
Confidence 888875 445443222222222233567899999999999999999999975 221111111111111 1
Q ss_pred CCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHH
Q 041151 261 KEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESK 339 (463)
Q Consensus 261 ~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (463)
. ...++-|+-|.| -+| +|-+++..-+..+++.+.+... ....+++.. .+..+|.. +...|.+...+.+
T Consensus 215 r--ida~vqsldknf-~vp---vggaiia~fk~n~iq~iak~ypgrasa~ps~d--llitll~~---gqn~f~e~~~eqk 283 (432)
T KOG3843|consen 215 R--IDAFVQSLDKNF-MVP---VGGAIIAAFKDNFIQEIAKMYPGRASASPSLD--LLITLLSL---GQNAFKELFGEQK 283 (432)
T ss_pred c--HHHHHHHhhhcc-eee---cchhHhhHhHHHHHHHHHHhCCCccccCccHH--HHHHHHHh---chhHHHHHHHHHH
Confidence 1 124668899988 333 3333321124677888877765 223333333 33333322 2355555555544
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeec-cCChhhHHHHhhcCCCChHHHHHHHHHhcCeE---eeCCC-
Q 041151 340 GILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQI-RLPPKAIEAAKRAGKVPDVFYCLRLLEATGIS---TVPGS- 414 (463)
Q Consensus 340 ~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~---v~pg~- 414 (463)
++...++.+...+.+...++ -+..|+....+-..+ .+++.. +......-..|...||. |.|.+
T Consensus 284 emf~~l~~ki~~~ae~~~e~---l~~~p~n~is~amtl~ti~~~k---------~kavt~~gsilfak~isgarvv~~~q 351 (432)
T KOG3843|consen 284 EMFLKLRNKIIKFAEAIGEC---LLETPENEISLAMTLKTIDEAK---------DKAVTLFGSILFAKGISGARVVPLGQ 351 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhh---hhcCCCchhhhhhhhccCChHH---------hhHHHHHHHHHHhccccCceEeeccc
Confidence 44444444444444444432 223344433332222 223221 01222233344455553 33321
Q ss_pred -----------CCCCCCC---CcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 415 -----------GFGQKEG---IFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 415 -----------~f~~~~~---~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.|+.... ..|+-+.++ .+..|+++++.||...++.+++
T Consensus 352 ~kttieg~ef~~f~sht~e~~~~yln~a~aigm~~hdld~~~~rl~~~~a~~~k 405 (432)
T KOG3843|consen 352 MKTTIEGCEFIGFGSHTNEQHCAYLNAACAIGMKDHDLDEFFNRLDRCLAAFRK 405 (432)
T ss_pred cceeeeceEEeccccccCcCchhHhhHHHhcCCcHhHHHHHHHHHHHHHHHHHH
Confidence 2222111 134555444 7779999999999988887765
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.039 Score=54.83 Aligned_cols=303 Identities=14% Similarity=0.097 Sum_probs=154.8
Q ss_pred CHHHHHHHHHHHHHhcCCC-----C---CCCcEEEcCCcHHHHHHHHHHHh---c--CCCC-----------EEEEc---
Q 041151 109 IPGVRKEVAEFIERRDGYP-----S---DPELIFLTDGASKGVMQTLNCVI---R--GEGD-----------GVVLL--- 161 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~-----~---~~~~i~~t~G~~~al~~~~~~l~---~--~~gd-----------~Vlvp--- 161 (463)
.++|.--+-+|+.+..++| . +.-.|+.++.+-..+-.++.+-. + +.+. -|...
T Consensus 111 ~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDq 190 (511)
T KOG0628|consen 111 CTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQ 190 (511)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCc
Confidence 4789989999998877764 1 22366666654433333333321 0 1221 12221
Q ss_pred -----------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCe
Q 041151 162 -----------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENL 226 (463)
Q Consensus 162 -----------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~ 226 (463)
.|+++ .+.+++++. +.|++++.+..++| -+-.+++.+-. |..+.+-+++.+|..+|+++++
T Consensus 191 ahssveka~~i~~VklR~l~td~n~~mr~-~~L~~AIe~D~arG-lIPf~v~at~G--TT~~ca~D~l~elg~Vc~~~gl 266 (511)
T KOG0628|consen 191 AHSSVEKACLIAGVKLRALPTDENFGMRG-DTLRKAIEEDIARG-LIPFFVCATLG--TTSSCAFDELEELGPVCREEGL 266 (511)
T ss_pred ccchHHHhHhhcceeEEEeecccCcCCCH-HHHHHHHHHHHhCC-CccEEEEEeec--CccccccccHHHhcchhhhcCE
Confidence 44444 455999999 99999999876665 34444333443 2333455789999999999999
Q ss_pred EEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC---------ChhHH-
Q 041151 227 VLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI---------PPKTV- 296 (463)
Q Consensus 227 ~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~---------~~~~~- 296 (463)
|+-+|.+|+...+. .+-+..+..++ ..- .=+....||++ +..+-+..+-+.++ ++...
T Consensus 267 WLHVDAAYAGsa~i----CpE~r~l~rGi----e~a--DSfn~n~hK~~--~vnfDCs~lWvkd~~~~~~~~~vdp~yL~ 334 (511)
T KOG0628|consen 267 WLHVDAAYAGSAFI----CPEFRYLMRGI----EYA--DSFNFNPHKWL--LVNFDCSPLWVKDGTKLSRAFNVDPLYLK 334 (511)
T ss_pred EEEeehhhcccccc----CHHHHHHhhcc----hhh--ccccCChhhee--EEeeeeecceeecCceeeeeeecChHhhc
Confidence 99999999965441 11233332222 110 01334556643 23443333332111 11110
Q ss_pred HHHHh-hhh-hcccCChHHH-HHHHHhcCCCCCCCchHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCCCcccccCCc-
Q 041151 297 DEIYK-IAS-IALSPNVPAQ-IFMGLMVNPLKPGDISYEQFVRESKGILES---LRRRARMMTDGFNSCRNVVCNFTEG- 369 (463)
Q Consensus 297 ~~l~~-~~~-~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~pg~~~~~~~g- 369 (463)
..... ... ..|..+..-- ..+..++. .+.+. .+.++++ .-+..+.+.+.+.+-+.+++..+..
T Consensus 335 h~~~~~~~Dyrhwqipl~rRfRSLKlWfv--------~R~~G--ve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~l 404 (511)
T KOG0628|consen 335 HAYQGSAPDYRHWQIPLGRRFRSLKLWFV--------LRSYG--VENLQNYIREHVRLAKEFETLVRADPRFEIVNKRIL 404 (511)
T ss_pred chhhccCCCccccccccccchhhHHHHHH--------HHHHh--HHHHHHHHHHHHHHHHHHHHHhhcCCcceeeccccc
Confidence 01000 000 1111111000 00111100 00010 1122222 2222333444444434566654432
Q ss_pred eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHH
Q 041151 370 AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKF 446 (463)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~ 446 (463)
|+..| +++-... ....++.++-....|.+.|.+.- +.-.+|++++ +++++++.+.+.|.+.
T Consensus 405 gLvcF-Rlk~~N~-----------~ne~Ll~~in~~g~i~l~~~~l~----gk~vlRf~V~s~~t~~~di~~a~~~I~~~ 468 (511)
T KOG0628|consen 405 GLVCF-RLKGDNE-----------INEALLNRLNSSGRIHLVPASLH----GKFVLRFAVCSPLTNESDIDEAWKIIFEA 468 (511)
T ss_pred ceeEE-eecCCcH-----------HHHHHHHHHHhcCcEEEEEeeec----ceEEEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 33332 2321111 13555666666667999886653 4457999999 7889999999999998
Q ss_pred HHHHHHH
Q 041151 447 NDEFMEQ 453 (463)
Q Consensus 447 l~~~~~~ 453 (463)
..++.++
T Consensus 469 a~~l~~~ 475 (511)
T KOG0628|consen 469 ADELFEA 475 (511)
T ss_pred HHHHHhh
Confidence 8876543
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.14 Score=50.69 Aligned_cols=257 Identities=15% Similarity=0.220 Sum_probs=137.2
Q ss_pred cCCCCCCCcEEEcCCcHHHHHHHHHHHh--cCCCCEEEEc-----------------cCceecCCCcccChHHHHHHHHH
Q 041151 124 DGYPSDPELIFLTDGASKGVMQTLNCVI--RGEGDGVVLL-----------------FHTTWKRQQIGVLIINDLQQSVA 184 (463)
Q Consensus 124 ~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~~gd~Vlvp-----------------~g~~~~~~~~~~d~~~~l~~~l~ 184 (463)
-|.++. |--+--+++.+-+.+..+.- +++..+++|+ .|.++...+.. |. +.|++. .
T Consensus 133 TGm~VA--NASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-d~-~~l~~~-~ 207 (450)
T COG0403 133 TGLDVA--NASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-DL-DDLESA-D 207 (450)
T ss_pred hCCCcc--cchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-hh-hhhhhc-c
Confidence 354433 33344555555555555442 2346889998 33333111111 66 777777 4
Q ss_pred HHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec-ccccccccCCCCCccchHHHHHhcCCCCCCCc
Q 041151 185 QARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD-EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEV 263 (463)
Q Consensus 185 ~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D-eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (463)
+. .+-++++.+|+. .|. ..+++.+|.+.+++++.++++= |.-+.... +++ .+.+
T Consensus 208 ~~-----~~~gv~vQyP~~-~G~--~~~d~~~l~~~~h~~~al~~v~aDplaL~LL---~pP--------------Ge~G 262 (450)
T COG0403 208 DG-----DVFGVLVQYPNT-FGI--VEEDLRALIEAAHSAGALVIVAADPLALGLL---KPP--------------GEFG 262 (450)
T ss_pred cc-----CeEEEEEecCCC-CCc--cchhHHHHHHHHhhcCCEEEEEechhHhhcc---CCc--------------cccC
Confidence 32 688899899984 563 3356999999999998777642 11111111 111 2222
Q ss_pred eEEEEecCCcccCCC----CCceeEEEEecCCChhHHHH---------------------H-------Hhhhh-hcccCC
Q 041151 264 QLVSFHTVSKGYWGE----CGQRGGYFEMTNIPPKTVDE---------------------I-------YKIAS-IALSPN 310 (463)
Q Consensus 264 ~~i~~~S~SK~~~g~----~G~R~G~~~~~~~~~~~~~~---------------------l-------~~~~~-~~~~~~ 310 (463)
-.|++++..- | |+ .|=.+||..+ ..++... | ++-+. .+++++
T Consensus 263 ADIvvG~~Qr-f-GvPmgfGGPhag~fA~---~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTn 337 (450)
T COG0403 263 ADIVVGSAQR-F-GVPMGFGGPHAGYFAV---KDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTN 337 (450)
T ss_pred CceEEecCcc-c-CCCcCCCCcceeeeeE---hHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHH
Confidence 3477888765 3 33 3555778775 3433321 1 11111 123333
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCC-CcccccCCceeEEeeeccCChhhHHHH
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFV--RESKGILESLRRRARMMTDGFNSCR-NVVCNFTEGAMYSFPQIRLPPKAIEAA 387 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~p-g~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (463)
....+.++++ |..+. .-++++..+..+...++.+.|++.. |+.+... .||--+.++++..
T Consensus 338 QaLlA~~As~----------y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~~v~~~~~----- 400 (450)
T COG0403 338 QALLALAASM----------YAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTFTVRVPEE----- 400 (450)
T ss_pred HHHHHHHHHH----------HHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeEEEecchh-----
Confidence 2222222221 11111 2256788888889999999999752 5665543 6666555665521
Q ss_pred hhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 388 KRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 388 ~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
..+.+.......|+-++.-. . ..+=+++. .+.++++.+++.+...
T Consensus 401 -------~~~~l~~~~~~~G~~L~~~~---~----~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 401 -------VAEALLAAAIAGGINLRRVD---A----DTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred -------HHHHHHHHHHhcCCceeeec---C----CceEEEeecccCHHHHHHHHHHHhhh
Confidence 12222333445566665422 1 14667776 5678888888777543
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0051 Score=68.59 Aligned_cols=204 Identities=10% Similarity=-0.007 Sum_probs=129.0
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-----cCCCCEEEEc---
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-----RGEGDGVVLL--- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----~~~gd~Vlvp--- 161 (463)
...+.. .....|-++.|...+|..||.|++..+++++++++|++.++-..||.++++.+. .+.+.+-.+|
T Consensus 411 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (1082)
T PLN02672 411 ASALKG--LSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLPKKW 488 (1082)
T ss_pred HHHHcc--CCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhccCCHHH
Confidence 334444 367788899999999999999999999999999999999999999988887652 1455555555
Q ss_pred ------cC--------cee--cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 ------FH--------TTW--KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 ------~g--------~~~--~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
.| .++ .+..-.- +.+.+.++.. ++++|+..-.. +-..+....+.|++.+++.|
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 557 (1082)
T PLN02672 489 LTSLAIENATSDSKSDDVITVIEAPRQS---DLVIELIKKL-----KPQVVVTGMAD---FEMRTSTAFEHLLNVTAEIG 557 (1082)
T ss_pred HhHhhhhcccccCccCCeEEEEeCCCcc---hHHHHHHHhC-----CCeEEEEeccc---hhhhhHHHHHHHHHHHHhhC
Confidence 11 111 2222222 3455666664 78888765322 33445567999999999999
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS- 304 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~- 304 (463)
.+++.|.+-..- .+.......+..++.+ .+.. .+..++.++-|.- -.+.+-+.+++- -+..+...+.+...
T Consensus 558 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 629 (1082)
T PLN02672 558 ARLFLDISDHLE-LSSLPGSNGVLKYLAG--HPLP--SHAAIICGLVKNQ-VYSDLEVAFVIS--ENEAVLKALSKTGEV 629 (1082)
T ss_pred cEEEEehhhhee-eccCCCcccHHHHhcC--CCCC--cchhHhhhhhhcc-ccccceEEEEec--CcHHHHHHHHHHHHh
Confidence 999999764321 1111111222222211 1111 1345666676664 348999999984 45566677665443
Q ss_pred hcccCChHHH
Q 041151 305 IALSPNVPAQ 314 (463)
Q Consensus 305 ~~~~~~~~~q 314 (463)
....++.++|
T Consensus 630 ~~~~~~~~~~ 639 (1082)
T PLN02672 630 LEGRTAIISQ 639 (1082)
T ss_pred hccchHHHHH
Confidence 3344455555
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.14 Score=56.35 Aligned_cols=226 Identities=11% Similarity=0.096 Sum_probs=122.1
Q ss_pred CCEEEEccCcee----------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 155 GDGVVLLFHTTW----------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 155 gd~Vlvp~g~~~----------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
..+|+|+..+.+ ...++.+-. +.+++.+.+ ++-++++.+||. .|.+ +++++|.+++++.
T Consensus 168 ~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-~~~~~~~~~------~~~~v~vq~P~~-~G~i---~d~~~i~~~~h~~ 236 (954)
T PRK12566 168 SNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-DAVDNLAAH------AVFGALLQYPDT-HGEI---RDLRPLIDQLHGQ 236 (954)
T ss_pred CCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-cchhhcCCC------CEEEEEEECCCC-ceEE---ccHHHHHHHHHHc
Confidence 568989844433 223333334 556554443 688888999986 6888 4588899999998
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccC---CCCCceeEEEEecCCChhHHHHH--
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYW---GECGQRGGYFEMTNIPPKTVDEI-- 299 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~---g~~G~R~G~~~~~~~~~~~~~~l-- 299 (463)
+.++++ .+.- +..+ - ..+. .+.+=.|++++- +.|+ |..|=-.|++.+ ..++...+
T Consensus 237 gal~~~-~~d~-laL~-l--l~~P-----------ge~GADI~vG~~-Q~fGvp~~~GGP~ag~~a~---~~~~~R~~PG 296 (954)
T PRK12566 237 QALACV-AADL-LSLL-V--LTPP-----------GELGADVVLGST-QRFGVPMGYGGPHAAYFAC---RDDYKRAMPG 296 (954)
T ss_pred CCEEEE-EeCH-HHHh-C--CCCh-----------hhcCCcEEeeCC-CcCCCCCCCCCCCeeeeee---hHHHHhhCCC
Confidence 887663 2211 1110 0 0111 111223566633 2220 222334788875 44444322
Q ss_pred --------------------------Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHH-HHH-HHHHHHHHHHHHH
Q 041151 300 --------------------------YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQF-VRE-SKGILESLRRRAR 350 (463)
Q Consensus 300 --------------------------~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 350 (463)
++-+. .+++++....+.++.+ |..+ -.+ ++++.++..++..
T Consensus 297 RivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~----------Y~~~~Gp~Gl~~ia~~~~~~a~ 366 (954)
T PRK12566 297 RIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGF----------YAVYHGPEGLKRIAQRVHRLTA 366 (954)
T ss_pred CccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHH----------HHHHhChHHHHHHHHHHHHHHH
Confidence 11111 1222222222222222 2112 122 5566777888888
Q ss_pred HHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 351 MMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 351 ~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
++.+.|.+. |+++... .||--+.+++.. +..+ +.....+.||-++--+ ...+.||+.
T Consensus 367 ~l~~~l~~~-g~~~~~~--~fF~~~~v~~~~------------~~~~-~~~~a~~~~~n~r~~~-------~~~~~~s~d 423 (954)
T PRK12566 367 ILAAGLEAK-GIKRLNR--HFFDTLTLEVGG------------AQAA-IIESAEAARINLRILG-------RGRLGVSLD 423 (954)
T ss_pred HHHHHHHhc-CCccccC--CccceEEEEccC------------CHHH-HHHHHHHCCCeeEEeC-------CCeEEEEeC
Confidence 999999884 8886543 566554444311 1233 3455666788877522 235888888
Q ss_pred --CCcCcHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFK 444 (463)
Q Consensus 431 --~~~e~i~~~~~~l~ 444 (463)
.+.+|++.++..+.
T Consensus 424 e~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 424 ETCDEATVARLFDIFL 439 (954)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 78888888888884
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.027 Score=55.30 Aligned_cols=318 Identities=11% Similarity=0.086 Sum_probs=157.1
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCC----------CEEEEc------
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEG----------DGVVLL------ 161 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~g----------d~Vlvp------ 161 (463)
+..-|--..+.....+.+-..+.+-.|++...+.|+--.|+...++.+.-+--+ -|+ +-|+..
T Consensus 129 n~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHY 208 (510)
T KOG0629|consen 129 NMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHY 208 (510)
T ss_pred CCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchh
Confidence 344444444444455556566656667776656666555555545444433210 122 223332
Q ss_pred --------cC-----cee--cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCe
Q 041151 162 --------FH-----TTW--KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENL 226 (463)
Q Consensus 162 --------~g-----~~~--~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~ 226 (463)
+| +.. ......++. ++||+.|-...++|..+=.+-.+.-...-|.. +++..|+++|++|++
T Consensus 209 Si~kaAa~lg~gtd~c~~v~t~e~Gkm~~-~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAF---DdL~~iadiC~k~~l 284 (510)
T KOG0629|consen 209 SIKKAAAFLGLGTDHCIKVKTDERGKMIP-DDLEKKILEAKAKGGVPFFVNATAGTTVLGAF---DDLNGIADICEKHKL 284 (510)
T ss_pred hHHHHHHHhccCCceeEEecccccCccch-HHHHHHHHHHHhcCCCCeEEEecCCceeeecc---CcHHHHHHHHHhcCE
Confidence 22 111 556788999 99999998764444222222222335555666 568999999999999
Q ss_pred EEEeccccccc-ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhh
Q 041151 227 VLLGDEVYQQN-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI 305 (463)
Q Consensus 227 ~vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~ 305 (463)
|+-+|.+|... ..+..+.+ -+.. . +..+ -+..+.+|.+ | +.+.++..++ ....+.++-......
T Consensus 285 WmHvDAAwGGglLmS~k~R~-kl~G----i-----era~-SvtwnpHK~~-g-aplqCsa~l~--r~~gll~~Cn~~~A~ 349 (510)
T KOG0629|consen 285 WMHVDAAWGGGLLMSRKHRH-KLTG----I-----ERAN-SVTWNPHKLM-G-APLQCSAFLT--REEGLLQRCNQMSAI 349 (510)
T ss_pred EEEeecccccccccChhhHh-hccC----c-----cccC-ceeecHHHhh-c-CcchhhHHHH--HHHHHHHhhcccchh
Confidence 99999999863 22111111 1111 1 1112 2457788988 5 5777777764 223333322211100
Q ss_pred c-ccCC---hHHHHHHHHhcCCCCCCCchHHHHHHH-------HHHHHHHHHHHHHHHHHHhhcCCCccc-cc--CC-ce
Q 041151 306 A-LSPN---VPAQIFMGLMVNPLKPGDISYEQFVRE-------SKGILESLRRRARMMTDGFNSCRNVVC-NF--TE-GA 370 (463)
Q Consensus 306 ~-~~~~---~~~q~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~--~~-g~ 370 (463)
. +... ..+.-+....+.+++ ....+..|+-| .+....++-++++++.+.|++.+|+.. .. |+ -+
T Consensus 350 YLFq~dK~YdvS~DTgdK~iQCGR-h~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~n 428 (510)
T KOG0629|consen 350 YLFQQDKFYDVSYDTGDKAIQCGR-HVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVN 428 (510)
T ss_pred hhhccCceeecccccccchhhcCc-cccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEE
Confidence 0 0000 000011111122211 00111111111 234566778889999999999866433 22 44 23
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHH----------HHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCcCcHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVF----------YCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAEEDMP 437 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~e~i~ 437 (463)
+..| -.|.... +...+.+ .+...+-+.|-....=...+. ..+++|+.+. .+.++++
T Consensus 429 v~fw---~vp~~lR------~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~--~~nffr~v~sn~a~~~ad~d 497 (510)
T KOG0629|consen 429 VCFW---YVPPSLR------GWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGD--KPNFFRMVISNPALTEADLD 497 (510)
T ss_pred Eeec---cCchHhc------cCcccchhhhHHHhhCcHHHHHHHhccceeeEeccccc--ccchhheecccchhhhhhHH
Confidence 3333 2333211 1111111 122233344543332111121 2348999888 4778888
Q ss_pred HHHHHHHHHH
Q 041151 438 AIMESFKKFN 447 (463)
Q Consensus 438 ~~~~~l~~~l 447 (463)
-+++.|..+-
T Consensus 498 flldEIerlg 507 (510)
T KOG0629|consen 498 FLLDEIERLG 507 (510)
T ss_pred HHHHHHHHhc
Confidence 8888776543
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.16 Score=47.51 Aligned_cols=301 Identities=15% Similarity=0.130 Sum_probs=149.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCc---c-CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-C--
Q 041151 81 FPADAIARAKHYLSLTSGGLGA---Y-SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-G-- 153 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~---Y-~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~-- 153 (463)
+|..++..+...+-++.+.-.+ - ..+.....+.+.-...+++.++++-+-+-+++-.|++.-+..+...|.- +
T Consensus 18 lp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~glK~g 97 (370)
T KOG2790|consen 18 LPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIGLKHG 97 (370)
T ss_pred CCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhhccccC
Confidence 4888888887766664321000 0 1122234455555555666666553333444555666667666666641 2
Q ss_pred -CCCEEEEc------------cCce--e----cCC--CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 154 -EGDGVVLL------------FHTT--W----KRQ--QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 154 -~gd~Vlvp------------~g~~--~----~~~--~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
..|-|++- +|.. + ... +--+|. +.|+.. ++.+.+++|.--..-|+-++.-
T Consensus 98 ~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~-~~w~~~--------~da~yvyyCaNETVHGVEf~~~ 168 (370)
T KOG2790|consen 98 RCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDP-STWELN--------PDASYVYYCANETVHGVEFDFI 168 (370)
T ss_pred CccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCCh-hhcccC--------CCccEEEEecCceeeceecCCC
Confidence 33555553 2211 1 111 122444 444321 1567778885444446554421
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
- +-.-++..++.|-+--.+. + +..+ .+ .-+++.+..|.+ |++|+. .+++ .
T Consensus 169 P------~~~~~~~vlVaDmSSnflS----r-pvDv-----------sk--~gvi~aGAQKN~-G~aG~T-vviv----r 218 (370)
T KOG2790|consen 169 P------VNDPKGAVLVADMSSNFLS----R-PVDV-----------SK--FGVIFAGAQKNV-GPAGVT-VVIV----R 218 (370)
T ss_pred C------CCCCCCceEEEecccchhc----C-Cccc-----------hh--cceEEecccccc-CccccE-EEEE----e
Confidence 1 1124578888886644321 2 2222 22 237789999999 889963 3333 5
Q ss_pred hhHHHHHHhhh-------------hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 041151 293 PKTVDEIYKIA-------------SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE---SKGILESLRRRARMMTDGF 356 (463)
Q Consensus 293 ~~~~~~l~~~~-------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L 356 (463)
++++....... +...+++.+..+++-..+ +|+.+ +..+.+.-.++.+.+++.+
T Consensus 219 ~dllg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~-----------~~il~~GGl~a~e~~n~~KskllYd~i 287 (370)
T KOG2790|consen 219 KDLLGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVF-----------EWILEKGGLAAMEKLNQEKSKLLYDAI 287 (370)
T ss_pred hhhhcccccCCccccceeeeccccccccCCCeeeeeehhhHH-----------HHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 55654433221 122344444444443333 12222 3345555566788999999
Q ss_pred hcCCCccccc--CC--ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 357 NSCRNVVCNF--TE--GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 357 ~~~pg~~~~~--~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
.+..|+-..+ |. .-+-+..+++ +... +.+|+.+..+++=|.+ -|.. .-+.+|-|+=
T Consensus 288 D~s~gfy~cpVe~~~RS~MNV~Fri~-~d~L-----------e~eFLkeA~~~~mv~L-KGhR-----SVGGiRASlYNA 349 (370)
T KOG2790|consen 288 DNSNGFYRCPVEPSVRSRMNVPFRIE-KDEL-----------EAEFLKEAAKEHMVQL-KGHR-----SVGGIRASLYNA 349 (370)
T ss_pred HhcCCeEEcccchhhhhhcccceeec-chHH-----------HHHHHHHHHHhhhhcc-cccc-----ccccchhhhhcc
Confidence 8765654332 22 2233332333 1111 4566666555543333 2221 1124888887
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
.+-++.+. |.++++++.+.
T Consensus 350 isv~~~q~----L~~~m~~F~k~ 368 (370)
T KOG2790|consen 350 ISVEEVQK----LAAFMKEFQKK 368 (370)
T ss_pred ccHHHHHH----HHHHHHHHHHh
Confidence 56555554 44555555443
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=5.7 Score=37.88 Aligned_cols=142 Identities=10% Similarity=0.005 Sum_probs=90.8
Q ss_pred CcHHHHHHHHHHhhhcCC------CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC
Q 041151 81 FPADAIARAKHYLSLTSG------GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~------~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
.|..+.+.+.+.+..... -...-+...+....-..++...+ ...++|.+.|+-+-.+..++..+. +|
T Consensus 79 mPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVG------A~e~EvavmNsLTvNlh~Ll~sFy-KP 151 (465)
T KOG3846|consen 79 MPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVG------AQENEVAVMNSLTVNLHSLLISFY-KP 151 (465)
T ss_pred CchhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhcc------CCchhhhhHhhhhhHHHHHHHHhc-CC
Confidence 355555555555544211 12233445556667777777765 556799999999988998888886 66
Q ss_pred CC---EEEEc-----------------cCcee--------cCCC-cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC
Q 041151 155 GD---GVVLL-----------------FHTTW--------KRQQ-IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT 205 (463)
Q Consensus 155 gd---~Vlvp-----------------~g~~~--------~~~~-~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt 205 (463)
-. +|+.. .|..+ +..+ ..+-. +.+.+.+... |....+|.++..+.-|
T Consensus 152 TekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRt-eDILd~IEkn---gDeiA~v~fSGvqyYT 227 (465)
T KOG3846|consen 152 TEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRT-EDILDTIEKN---GDEIALVCFSGVQYYT 227 (465)
T ss_pred cchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhH-HHHHHHHHhc---CCeEEEEEeecceeec
Confidence 53 46654 44444 3333 23344 5555555542 3345666667889999
Q ss_pred ccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 206 G~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
|+.+. +.+|...-+..|++|=.|-+|+.
T Consensus 228 GQ~Fd---i~aIT~Agq~kgc~VGfDLAHAv 255 (465)
T KOG3846|consen 228 GQYFD---IGAITFAGQFKGCLVGFDLAHAV 255 (465)
T ss_pred ccccc---hhhhhhcccCCCcEechhhhhhh
Confidence 99998 56666555567999999999986
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.22 E-value=50 Score=35.11 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEc--CCc---HHHHHHHHHHHhcCCC----CEEEEc-----
Q 041151 99 GLGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFLT--DGA---SKGVMQTLNCVIRGEG----DGVVLL----- 161 (463)
Q Consensus 99 ~~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t--~G~---~~al~~~~~~l~~~~g----d~Vlvp----- 161 (463)
+.+.|.| .+|+..+-..+.+++.+--| -|++-+- +|+ ..++..+-..+. ..| ..-++|
T Consensus 567 nIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG----~D~~s~QPNsGA~GEYaGL~~IRaY~~-~kge~hRnvClIPvSAHG 641 (1001)
T KOG2040|consen 567 NIHPFAPVEQAQGYQQLFTELEKDLCEITG----FDSFSLQPNSGAQGEYAGLRVIRAYLE-SKGEGHRNVCLIPVSAHG 641 (1001)
T ss_pred cCCCCCchHHHhhHHHHHHHHHHHhheeec----ccceeecCCCCcccchhhHHHHHHHHH-hccCCcceeEEEeecccC
Confidence 4566666 56888888888888865433 2344443 332 334443333333 344 345667
Q ss_pred --------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 --------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 --------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
+|.++ ......+|. .+|.+...+..+ +-.++.++.|+.- |.. ++.++.++++..+||--|.
T Consensus 642 TNPASA~MagmkvvpV~~~~~G~id~-~dLk~kaekh~~---~Laa~MvTYPST~-Gvf--E~~i~d~cd~iHehGGQVY 714 (1001)
T KOG2040|consen 642 TNPASAAMAGMKVVPVGCDANGNIDM-VDLKAKAEKHKD---NLAALMVTYPSTH-GVF--EEGIDDICDIIHEHGGQVY 714 (1001)
T ss_pred CChhhHHhcCCEEEEeeccCCCCccH-HHHHHHHHHhhh---hhheeEEeccccc-ccc--cccHHHHHHHHHhcCCEEE
Confidence 56665 556788999 999887765422 5788889998752 443 4679999999999999999
Q ss_pred ecccccc
Q 041151 230 GDEVYQQ 236 (463)
Q Consensus 230 ~Deay~~ 236 (463)
.|-+...
T Consensus 715 lDGANMN 721 (1001)
T KOG2040|consen 715 LDGANMN 721 (1001)
T ss_pred ecCCCcc
Confidence 9988764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 463 | ||||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 1e-120 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 1e-105 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 4e-24 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 1e-12 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 4e-12 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 1e-11 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 4e-11 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 4e-11 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 4e-11 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 5e-11 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 7e-11 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-10 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 1e-10 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 2e-10 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 2e-10 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 4e-10 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 8e-10 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 7e-09 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 2e-08 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 3e-07 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 4e-07 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 4e-07 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 5e-07 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 6e-07 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 6e-07 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 2e-05 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 1e-04 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 3e-04 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 3e-04 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 3e-04 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 6e-04 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 7e-04 | ||
| 3dzz_A | 391 | Crystal Structure Of A Putative Plp-Dependent Amino | 8e-04 |
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 560 bits (1444), Expect = 0.0
Identities = 221/482 (45%), Positives = 304/482 (63%), Gaps = 29/482 (6%)
Query: 3 PKALDYESMNENVKKVQYAVRGELYLRASELQKE---------GKKIIFTNVGNPHALGQ 53
+ +++N V K +YAVRGE+ + A LQ++ +I++ N+GNP +LGQ
Sbjct: 20 AATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQ 79
Query: 54 RPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGV 112
+P+TF R+V+ALC P LL + +F AD+I+RAK L++ G GAYS S+GI G+
Sbjct: 80 QPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGL 139
Query: 113 RKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTW 166
R +A I RDG+P++ + IFLTDGAS GV + +IR E DG+++ L+ +
Sbjct: 140 RDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASI 199
Query: 167 KR---QQIGV---------LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214
+ L +D+++ + ARS+GI VRA+V+INPGNPTGQ L+E N
Sbjct: 200 ALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQ 259
Query: 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKG 274
+I++FC E LVLL DEVYQ+NIY D + F S KK++ +G +++ LVS+ +VSKG
Sbjct: 260 YDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYG-EEDLPLVSYQSVSKG 318
Query: 275 YWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQF 334
Y+GECG+RGGYFE+T ++IYKIAS+ L N+ QI L++NP K D SY +
Sbjct: 319 YYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASY 378
Query: 335 VRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP 394
E GIL SL RRA+ + FN + CN EGAMY FPQI LP KAIEAAK A K P
Sbjct: 379 KAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAP 438
Query: 395 DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
D FY LRLLE+TGI VPGSGFGQ G +H R TILP E+ +PA++ F F++ FM +Y
Sbjct: 439 DAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEY 498
Query: 455 ED 456
D
Sbjct: 499 RD 500
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 530 bits (1368), Expect = 0.0
Identities = 203/485 (41%), Positives = 298/485 (61%), Gaps = 36/485 (7%)
Query: 1 MAPKALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALG 52
+ +++ ESMN VK V+YAVRG + L+A E++ E ++ +I N+G+ A+G
Sbjct: 18 LYFQSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMG 77
Query: 53 QRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGG-LGAYSDSRGIPG 111
Q+P+TF RQV+ALC P LLD P+ FP DA RA+ L G LG+YS S+G+
Sbjct: 78 QQPITFLRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNC 133
Query: 112 VRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEG---DGVVL------L 161
+R++VA +I RRDG P+DP+ I+LT GAS G+ L ++ G G GV++ L
Sbjct: 134 IREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPL 193
Query: 162 FHTTWKR---QQIGV---------LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209
+ Q+ L +N+L+++V +A+ + + IINPGNPTGQ
Sbjct: 194 YSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAK-DHCDPKVLCIINPGNPTGQVQ 252
Query: 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269
S + +++ F ++E L LL DEVYQ N+Y + F S KKVL +MG +S V+L SFH
Sbjct: 253 SRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFH 312
Query: 270 TVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDI 329
+ SKGY GECG RGGY E+ N+ P+ ++ K+ S+ L P V Q M ++VNP G+
Sbjct: 313 STSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEE 372
Query: 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389
S+EQF RE + +L +L ++A++ D FN + CN +GAMY+FP+I +P KA+EAA+
Sbjct: 373 SFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQA 432
Query: 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449
PD+FYC++LLE TGI VPGSGFGQ+EG +H R TILP E + +++ K F+
Sbjct: 433 HQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHIN 492
Query: 450 FMEQY 454
F+E+Y
Sbjct: 493 FLEKY 497
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 167 bits (426), Expect = 2e-47
Identities = 90/476 (18%), Positives = 164/476 (34%), Gaps = 86/476 (18%)
Query: 1 MAPKALDYESM-----NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRP 55
+ + L ++SM ++ KK +R + K +I ++G+P G
Sbjct: 13 LGTENLYFQSMWSVRPSDMAKKTFNPIRA-IVDNMKVKPNPNKTMISLSIGDPTVFG--- 68
Query: 56 LTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115
P P V A+ A L SG Y+ S G R+E
Sbjct: 69 -NLP--------TD-----PEV-----TQAMKDA-----LDSGKYNGYAPSIGFLSSREE 104
Query: 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTWKRQ 169
+A + P + + + LT G S+ + L + G +++ L+ T +
Sbjct: 105 IASY-YHCPEAPLEAKDVILTSGCSQAIDLCLAVLAN-PGQNILVPRPGFSLYKTLAESM 162
Query: 170 QIGVLIINDLQQS-----VAQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILRFCY 222
I V + N L + + Q I +++ NP NP G S+ +L++IL
Sbjct: 163 GIEVKLYNLLPEKSWEIDLKQLEYL-IDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAA 221
Query: 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282
++ + +L DE+Y ++ + + + S +V ++S ++K + G R
Sbjct: 222 RQCVPILADEIYGDMVF-SDCKYEP-------LA-TLSTDVPILSCGGLAKRW-LVPGWR 271
Query: 283 GGYF----EMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRES 338
G+ + D + K++ L P Q G + + L +
Sbjct: 272 LGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQ---GALKSILCRTPGEF------Y 322
Query: 339 KGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFY 398
L L+ A + + + GAMY IE DV +
Sbjct: 323 HNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVG-------IEMEHFPEFENDVEF 375
Query: 399 CLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
RL+ + +P + F +R I E M + EF EQ+
Sbjct: 376 TERLVAEQSVHCLPATCFEYPN---FIRVVITVPEVMMLEACSRIQ----EFCEQH 424
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 6e-44
Identities = 79/469 (16%), Positives = 152/469 (32%), Gaps = 88/469 (18%)
Query: 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPF 70
M+ + V +R ++ K II +VG+P L +
Sbjct: 8 MSNHAGLVFNPIRT--VSDNAKPSPSPKPIIKLSVGDPTLDK--NLLTSAAQI------- 56
Query: 71 LLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP 130
+ A + S Y + G P R+ VA + + +
Sbjct: 57 -------------KKLKEA-----IDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEEL 98
Query: 131 EL------IFLTDGASKGVMQTLNCVIRGEGDGVVL------LFHTTWKRQQIGVLII-- 176
+ + L G S G++ + + GD ++ + T K IG+
Sbjct: 99 KSTIVKDNVVLCSGGSHGILMAITAICD-AGDYALVPQPGFPHYETVCKAYGIGMHFYNC 157
Query: 177 ---NDLQQSVAQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231
ND + + + R + +++ NP NP G S ++ +I+R + L L D
Sbjct: 158 RPENDWEADLDEIRRL-KDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSD 216
Query: 232 EVYQQNIY---QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF-- 286
E+Y ++ F S + F V V +K G R G+
Sbjct: 217 EIYAGMVFKGKDPNATFTS-------VA-DFETTVPRVILGGTAKNL-VVPGWRLGWLLY 267
Query: 287 -EMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL 345
+ P ++ + ++ + P Q + L ++ + + I+ +
Sbjct: 268 VDPHGNGPSFLEGLKRVGMLVCGPCTVVQ---AALGEALLNTP---QEHLDQ---IVAKI 318
Query: 346 RRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEA 405
A + + C + GAMY + I+ K DV + +LLE
Sbjct: 319 EESAMYLYNHIGECIGLAPTMPRGAMYLMSR-------IDLEKYRDIKTDVEFFEKLLEE 371
Query: 406 TGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
+ +PG+ F R T E E+ ++ F +++
Sbjct: 372 ENVQVLPGTIFHAPG---FTRLTTTRPVEV---YREAVERI-KAFCQRH 413
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 3e-41
Identities = 109/473 (23%), Positives = 180/473 (38%), Gaps = 114/473 (24%)
Query: 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTF--PRQVVALCQAPF 70
+ V+YA+R + L A EL+K+G K+I N+G+P F P +
Sbjct: 14 KRALSVEYAIRD-VVLPARELEKKGIKVIRLNIGDPVKFD-----FQPPEHMKE------ 61
Query: 71 LLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP 130
++ G Y DS G+P +RK + E +R++G P
Sbjct: 62 -------------AYCK------AIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVDITP 101
Query: 131 ELIFLTDGASKGVMQTLNCVIRGEGDGV-------------VLLFHTTWKRQQIGVLII- 176
+ + +T ++ + ++ GD + V + G +
Sbjct: 102 DDVRVTAAVTEALQLIFGALL-DPGDEILVPGPSYPPYTGLVKFYG--------GKPVEY 152
Query: 177 -----NDLQQSVAQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229
D Q + R K IT +A+ +INP NPTG + L EIL + + ++
Sbjct: 153 RTIEEEDWQPDIDDIRKK-ITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVI 211
Query: 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289
DE+Y Y+ E +S +K+V ++ + +SK Y G R GY M
Sbjct: 212 SDEIYDLMTYEGE--HISP--------GSLTKDVPVIVMNGLSKVY-FATGWRLGY--MY 258
Query: 290 NIPPKTVDEIY-----KIASIALSPNVPAQ--IFMGLMVNPLKPGDISYEQFVRESKGIL 342
+ P+ ++A I L PN PAQ GL G + +++E
Sbjct: 259 FVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT------GPMD---YLKEYMK-- 307
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
L+ R + N + +GA Y FP+I + D + L +
Sbjct: 308 -KLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKI----------EVGPWKNDKEFVLDV 356
Query: 403 LEATGISTVPGSGFG-QKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454
L + V GSGFG G H R LP E + E+ +F ++FM++
Sbjct: 357 LHNAHVLFVHGSGFGEYGAG--HFRAVFLPPIEI---LEEAMDRF-EKFMKER 403
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 6e-35
Identities = 75/341 (21%), Positives = 144/341 (42%), Gaps = 45/341 (13%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160
+ D G+P RK +A+F+E+ G DPE + + GA+ + C+ GD ++
Sbjct: 79 FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLV 137
Query: 161 L--FHTTWKRQQI---GVLII--------------NDLQQSVAQARSKGITVRAMVIINP 201
++ + R GV +I ++++ A+ I V+ +++ NP
Sbjct: 138 PSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNP 197
Query: 202 GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261
NP G L + L+ +L F Q N+ L+ DE+Y ++ D FVS ++L + + +
Sbjct: 198 SNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVF-DTPQFVSIAEILDEQEMTYCN 256
Query: 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMV 321
+ + +++SK G G R G + + V+ K++S L + Q F+ M+
Sbjct: 257 KDLVHIVYSLSKDM-GLPGFRVGI--IYSFNDDVVNCARKMSSFGLV-STQTQYFLAAML 312
Query: 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR--L 379
+ K D F+RES L +R + T+G + C ++ + +R L
Sbjct: 313 SDEKFVD----NFLRESA---MRLGKRHKHFTNGLEV-VGIKCLKNNAGLFCWMDLRPLL 364
Query: 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420
++ ++ ++ PGS F +E
Sbjct: 365 RESTFDSEMS--------LWRVIINDVKLNVSPGSSFECQE 397
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 4e-34
Identities = 72/349 (20%), Positives = 137/349 (39%), Gaps = 51/349 (14%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIE--RRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD 156
L + D G+P +K + +F+ R + DP + LT GA+ + C+ G+
Sbjct: 78 ELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGE 136
Query: 157 GVVLL--FHTTWKRQQI---GVLII--------------NDLQQSVAQARSKGITVRAMV 197
V++ ++ + R GV I+ L+++ +A + + V+ ++
Sbjct: 137 AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVL 196
Query: 198 IINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257
+ NP NP G ++ L +L F + + L+ DE+Y + F+S +VL D
Sbjct: 197 VTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF-SSPSFISVMEVLKDRNC 255
Query: 258 PFSKEV-QLVSFHTV---SKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPA 313
+ EV Q V H V SK G G R G + V K++S L +
Sbjct: 256 DENSEVWQRV--HVVYSLSKDL-GLPGFRVGAIYSND--DMVVAAATKMSSFGLVSS-QT 309
Query: 314 QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYS 373
Q + M++ K + ++ E+ + L++R + + G + C ++
Sbjct: 310 QHLLSAMLS-DKKLT---KNYIAENH---KRLKQRQKKLVSGLQKS-GISCLNGNAGLFC 361
Query: 374 FPQIR--LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420
+ +R L EA +++ ++ PGS E
Sbjct: 362 WVDMRHLLRSNTFEAEME--------LWKKIVYEVHLNISPGSSCHCTE 402
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 79/418 (18%), Positives = 140/418 (33%), Gaps = 101/418 (24%)
Query: 29 RASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPA-DAIA 87
A ++ G++II VG P A
Sbjct: 22 AARRAEEAGRRIIHMEVGQP-------------------------G------TGAPRGAV 50
Query: 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTL 147
A SL + LG Y+ + G+P +R+ +A G DP + +T G+S G +
Sbjct: 51 EALAK-SLETDALG-YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAF 108
Query: 148 NCVIRGEGDGVVLLFHTTWK--RQQI----GVLII------NDLQQSVAQARSKGITVRA 195
+ GD V + + RQ + V + N LQ A +
Sbjct: 109 TALF-DSGDRV-GIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGLDL--AG 164
Query: 196 MVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255
+++ +P NPTG L A + ++ + + DE+Y Y E V++
Sbjct: 165 LMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEY--EAKAVTA------- 215
Query: 256 GLPFSKEVQLV-SFHTVSKGY----WGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309
L + E ++ SF SK + W R G+ +P V + +IA + +
Sbjct: 216 -LELTDECYVINSF---SKYFSMTGW-----RVGW---MVVPEDQVRVVERIAQNMFICA 263
Query: 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEG 369
+Q+ + L E + L+ + ++M + +G
Sbjct: 264 PHASQV---AALAALDCDA--------ELQANLDVYKANRKLMLERLPKAGFTRIAPPDG 312
Query: 370 AMYSFPQIR-LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLR 426
A Y + + L + + +LE G++ PG F + G LR
Sbjct: 313 AFYVYADVSDLTDDSRA------------FAAEILEKAGVAVTPGLDFDPERGAGTLR 358
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-28
Identities = 54/391 (13%), Positives = 110/391 (28%), Gaps = 58/391 (14%)
Query: 94 SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR- 152
L G Y + G+P +++E + F + T G+ +G + R
Sbjct: 69 KLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRT 128
Query: 153 --GEGDGV-------------VLLFHTTWKRQQIGVLIINDLQQSVAQARSKGIT--VRA 195
G + ++ + + T +
Sbjct: 129 HKNREYGTLFIDPGFNLNKLQCRILGQKFES--FDLFEYRGEKLREKLESYL-QTGQFCS 185
Query: 196 MVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255
++ NP NPT QC+++ LR I + +++++ D Y + + + + L
Sbjct: 186 IIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDF--RKDYSHPGEPLYQP 243
Query: 256 GLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQI 315
+ + + + SK + GQR G I K + Y + +
Sbjct: 244 SVANYTD-NYILALSSSKAF-SYAGQRIGV---LMISGKLYEREYPDLEESFGRLRFGEA 298
Query: 316 FMGLMVNPLKPGDISYEQF------------VRESKGILESLRRRARMMTD-----GFNS 358
+ L G Q+ + + R+AR+M GFN
Sbjct: 299 LSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNI 358
Query: 359 CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418
+ N + F + + + + + +
Sbjct: 359 VYDKDGNEPLADGFYFTVGYKGMDSSK------------LIEKFVRYGMCAITLKTTGS- 405
Query: 419 KEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449
K T L E P + + + N E
Sbjct: 406 KRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-25
Identities = 79/409 (19%), Positives = 137/409 (33%), Gaps = 87/409 (21%)
Query: 29 RASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88
A +K G +I N+G P L P V + I
Sbjct: 34 FAEMAKKRGVRIHHLNIGQPD----------------------LKTPEVFF----ERIYE 67
Query: 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLN 148
K + YS S GI +R+ A + +RR PE + +T+G S+ ++ +
Sbjct: 68 NKP-------EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFA 120
Query: 149 CVIRGEGDGVVLL--FHTTWKRQQI---GVLIINDLQQS----VAQARSKGIT--VRAMV 197
+ GD +++L F+ + LI + + Q I + +V
Sbjct: 121 VIA-NPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFINERTKGIV 179
Query: 198 IINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257
+ NP NPTG + +R ++ + L L+ DEVY + +++ E F S+ L
Sbjct: 180 LSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE--FASA--------L 229
Query: 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFM 317
+ ++V +VSK + CG R G + + + K+A L+P + QI
Sbjct: 230 SIESD-KVVVIDSVSKKF-SACGARVGC--LITRNEELISHAMKLAQGRLAPPLLEQI-- 283
Query: 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQI 377
V L D ++ + R + GA Y ++
Sbjct: 284 -GSVGLLNLDDSFFDFVRETYR------ERV-ETVLKKLEEHGLKRFTKPSGAFYITAEL 335
Query: 378 RLPPKAIEAAKRAGKVPDVFYCLRLLE-----ATGISTVPGSGFGQKEG 421
+ + F +L P GF G
Sbjct: 336 P------------VEDAEEF-ARWMLTDFNMDGETTMVAPLRGFYLTPG 371
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 64/382 (16%), Positives = 124/382 (32%), Gaps = 94/382 (24%)
Query: 94 SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG 153
L L Y G P +K V++ PE I T+GA+ + L +I
Sbjct: 51 KLQGTKLN-YGWIEGSPAFKKSVSQLYTGVK-----PEQILQTNGATGANLLVLYSLI-E 103
Query: 154 EGD--------------------GVVLLFHTT----WKRQQIGVLIINDLQQSVAQARSK 189
GD V L+ W + L+Q + + +K
Sbjct: 104 PGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWL------PDLEKLRQLI-RPTTK 156
Query: 190 GITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249
+ I N NPTG + L E++ + +L DEVY+ + + P +
Sbjct: 157 -----MICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRS-FSELDVPSII-- 208
Query: 250 KVLMDMGLPFSKEVQLVSFHTVSKGY----WGECGQRGGYFEMTNIPPKTVDEIYKIAS- 304
++ + + ++ +++SK Y R G+ + D +
Sbjct: 209 ----EV-----YD-KGIAVNSLSKTYSLPGI-----RIGW---VAANHQVTDILRDYRDY 250
Query: 305 IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC 364
+ V + + L + + ++ L ++ V
Sbjct: 251 TMICAGVFDDL---VAQLALAHYQ----EILERNR---HILEENLAILDQWIEEEPLVSY 300
Query: 365 NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFH 424
SF +I + + +CL+LL+ G+ VPG+ F ++G +
Sbjct: 301 IRPAVVSTSFVKIAVDMPMED------------FCLQLLQEHGVLLVPGNRFE-RDG--Y 345
Query: 425 LRTTILPAEEDMPAIMESFKKF 446
+R +E + +E +F
Sbjct: 346 VRLGFACEQETLIKGLEKLSQF 367
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 5e-24
Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 64/337 (18%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLLF 162
Y+DSRGI +R++++E + + P+ I +T G+S G+ L+ +I +GD V L+
Sbjct: 62 YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEV-LIQ 119
Query: 163 HTTWK--RQQI----GVLIINDLQQSVAQARSKGIT--VRAMVIINPGNPTGQCLSEANL 214
+ + + I + D +V ++ +A++I +P NP G+ +
Sbjct: 120 NPCYPCYKNFIRFLGAKPVFCDF--TVESLEEA-LSDKTKAIIINSPSNPLGEVID---- 172
Query: 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKG 274
REI F Y+ ++ DE+Y +Y+ + S+ + + E + + + SK
Sbjct: 173 REIYEFAYENIPYIISDEIYNGLVYEGK--CYSA------IEFDENLE-KTILINGFSKL 223
Query: 275 Y----WGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329
Y W R GY + ++ I K+ + +S +Q + K +
Sbjct: 224 YAMTGW-----RIGYVIS---NDEIIEAILKLQQNLFISAPTISQ--YAALKAFEKETER 273
Query: 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389
++E RR R++ N GA Y FP I +
Sbjct: 274 EINSMIKE-------FDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIGEDGRE------ 319
Query: 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLR 426
+ +LL+ ++ PG GFG +G ++R
Sbjct: 320 --------FAYKLLKEKFVALTPGIGFG-SKGKNYIR 347
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 9e-24
Identities = 48/348 (13%), Positives = 95/348 (27%), Gaps = 64/348 (18%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGDGV--- 158
Y++ RG G+R +A + G P D + +T G + + + GD V
Sbjct: 74 YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAIV 132
Query: 159 ----------VLLFHTT--WKRQQIGVLIINDLQQSVAQARSKGITVRA-MVIIN-PGNP 204
V F + + A + + + P NP
Sbjct: 133 QPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEA-FKAGARVFLFSNPNNP 191
Query: 205 TGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQ 264
G S + +I + ++ D++Y + Y + + E
Sbjct: 192 AGVVYSAEEIGQIAALAARYGATVIADQLYSRLRY-AGASYTHLRAE-----AAVDAE-N 244
Query: 265 LVSFHTVSKGY----WGECGQRGGYFEMTNIPPKTVDEIYKIASIALS-PNVPAQIFMGL 319
+V+ SK + R G + + K+ +I +Q +
Sbjct: 245 VVTIMGPSKTESLSGY-----RLGVAFG---SRAIIARMEKLQAIVSLRAAGYSQA---V 293
Query: 320 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379
+ ++ + + + C V + Y FP++
Sbjct: 294 LRGWFDEAP----GWMEDRI---ARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRL-- 344
Query: 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLR 426
+ P F L G+ PG+ F +R
Sbjct: 345 --------PKLAVAPAEF-VKILRLQAGVVVTPGTEFSPHTAD--SVR 381
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 5e-22
Identities = 54/372 (14%), Positives = 118/372 (31%), Gaps = 61/372 (16%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGAS 140
P A+ + Y+ G P + + +++ + +P + +T GA
Sbjct: 52 PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAY 111
Query: 141 KGVMQTLNCVIRGEGDGVVLL-------------------FHTTWKRQQIGVLIINDLQQ 181
+ + T+ + EGD V+++ F + G + D
Sbjct: 112 EALYATIQGHVD-EGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVL 170
Query: 182 SVAQARSKGITVRA-MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+ + + M+IIN P NP G+ + A L + C + N++ + DEVY+ ++
Sbjct: 171 DNNELEAL-FNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVF 229
Query: 240 QDERPFVSSKKVLMDMGLPFSKE--VQLVSFHTVSKGY----WGECGQRGGYFEMTNIPP 293
+ + LP E + + S K + W + G+ P
Sbjct: 230 -EPFEHIRI------CTLPGMWERTITIGSA---GKTFSLTGW-----KIGW---AYGPE 271
Query: 294 KTVDEIYKIAS-IALSPNVPAQ----IFMGLMVNPLKPGDISYEQFVRESKGILESLRRR 348
+ + + + P Q + + LK + + E L +
Sbjct: 272 ALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGE-------LMAK 324
Query: 349 ARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGI 408
M + +G + ++ + D + + ++ G+
Sbjct: 325 RDYMASFLAEVG-MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGL 383
Query: 409 STVPGSGFGQKE 420
+P S F +
Sbjct: 384 QGIPPSAFYSEP 395
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 7e-22
Identities = 67/370 (18%), Positives = 124/370 (33%), Gaps = 59/370 (15%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK 141
P AI A+ L + YS +RG P + + + E + +T GA++
Sbjct: 72 PQFAIKEAQKALD--IPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANE 129
Query: 142 GVMQTLNCVIRGEGDGVVLL--FH-------------------TTWKRQQIGVLIINDLQ 180
G++ L ++ GD V++ F K +
Sbjct: 130 GILSCLMGLLN-AGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWT 188
Query: 181 QSVAQARSKGITVRA-MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238
Q IT + VIIN P NP G+ + L + C + N+V++ DEVY+
Sbjct: 189 IDFEQFEKA-ITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLY 247
Query: 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY----WGECGQRGGYFEMTNIPPK 294
+ D F + ++ + + S K + W R G+ + ++ +
Sbjct: 248 FTDS--FTRIATLSPEI---GQLTLTVGSA---GKSFAATGW-----RIGW--VLSLNAE 292
Query: 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
+ K + I + P Q +N +E+ +E + ++ T
Sbjct: 293 LLSYAAKAHTRICFASPSPLQEACANSINDALK-IGYFEKMRQE-------YINKFKIFT 344
Query: 354 DGFNSCRNVVCNFTEGAMYSFPQIR---LPPKAIEAAKRAGKVPDVFYCLRLLEATGIST 410
F+ + EG + +P + K D L+ G+
Sbjct: 345 SIFDELG-LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVA 403
Query: 411 VPGSGFGQKE 420
+P + F KE
Sbjct: 404 IPPTEFYIKE 413
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 1e-21
Identities = 76/352 (21%), Positives = 145/352 (41%), Gaps = 76/352 (21%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGDGV--- 158
Y + G+ +R+ +AE +++++G +DP+ I + GA++ + L+ + +G+ V
Sbjct: 59 YGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIP 117
Query: 159 ----------VLLFHTTWKRQQIGVLII------NDLQQSVAQARSKGITVRA-MVIIN- 200
V+L G + ++ + +V + + +T + +IIN
Sbjct: 118 TPAFVSYAPAVILAG--------GKPVEVPTYEEDEFRLNVDELKKY-VTDKTRALIINS 168
Query: 201 PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFS 260
P NPTG L++ +L EI F + +L+++ DEVY+ IY D+ S L
Sbjct: 169 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSI------ASLDGM 221
Query: 261 KEVQLVSFHTVSKGY----WGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQI 315
E + ++ + SK + W R G+ P ++ + K A P Q
Sbjct: 222 FE-RTITVNGFSKTFAMTGW-----RLGF---VAAPSWIIERMVKFQMYNATCPVTFIQY 272
Query: 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375
LK + + + + + RR +++ N + +GA Y FP
Sbjct: 273 ---AAAKALKDE-----RSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFP 323
Query: 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLR 426
+I + G F +L+ ++ VPGS FG+ EG ++R
Sbjct: 324 RI----------RDTGLTSKKF-SELMLKEARVAVVPGSAFGKAGEG--YVR 362
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-21
Identities = 63/394 (15%), Positives = 121/394 (30%), Gaps = 99/394 (25%)
Query: 97 SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD 156
S L Y+ ++G R +AEF+ G + + +++T GA+ + + D
Sbjct: 66 SVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYD 125
Query: 157 GVVLLFHTTWK--RQQI----GVLII-----NDLQQSVAQARSKGITVR-AMVIIN-PGN 203
+ + + + L+ Q + I VIIN P N
Sbjct: 126 -EFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEER-INAHTRGVIINSPNN 183
Query: 204 PTGQCLSEANLREILRFC------YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257
P+G SE ++++ + ++ DE Y++ +Y V +
Sbjct: 184 PSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGI--KVPF--------V 233
Query: 258 PFSKEVQLVSFHTVSKGY----WGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPA 313
+ + ++ SK R GY +P + D+ A++ +
Sbjct: 234 TKYYD-NTLVCYSYSKSLSLPGE-----RIGY---VLVPDEVYDKAELYAAVCGA----G 280
Query: 314 QIFMGLMVNPLKPGDISYEQFVRESKGILESL---------RRRARMMTDGFNSCRNVVC 364
+ V S Q K I++ + ++ +G C
Sbjct: 281 RALG--YVCA-----PSLFQ-----KMIVKCQGATGDINAYKENRDLLYEGLTRI-GYHC 327
Query: 365 NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFH 424
+GA Y F + +C + E + V GFG G
Sbjct: 328 FKPDGAFYMFVKALED-------------DSNAFCEKAKEE-DVLIVAADGFG-CPG--W 370
Query: 425 LR----TTILPAEEDMPAIMESFKKFNDEFMEQY 454
+R D I S F ++ ++Y
Sbjct: 371 VRISYCV-------DREMIKHSMPAF-EKIYKKY 396
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 7e-21
Identities = 72/376 (19%), Positives = 129/376 (34%), Gaps = 98/376 (26%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGAS 140
P R H+++ G Y+ G+ +R+ +A+ ER GY D + I +T GA+
Sbjct: 45 PRYLQERLAHHVA---QGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGAT 101
Query: 141 KGVMQTLNCVIRGEGDGVVLL---------------------------FHTTWKRQQIGV 173
+ + + ++R GD V+ F W
Sbjct: 102 EALYAAITALVR-NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDW------- 153
Query: 174 LIINDLQQSVAQARSKGITVRA-MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGD 231
Q A ++ R +VI+N P NP+ +A+ + + + ++ D
Sbjct: 154 -------QEFAAL----LSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISD 202
Query: 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKE--VQLVSFHTVSKGY----WGECGQRGGY 285
EVY+ + ++ S + P +E V + SF K Y W + GY
Sbjct: 203 EVYEHINF-SQQGHASV------LAHPQLRERAVAVSSF---GKTYHMTGW-----KVGY 247
Query: 286 FEMTNIPPKTVDEIYKI-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344
P EI K+ + S N PAQ+ + + L+ Y
Sbjct: 248 ---CVAPAPISAEIRKVHQYLTFSVNTPAQL---ALADMLRAEPEHYLALPDF------- 294
Query: 345 LRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLE 404
R++ ++ + N R + EG + + DV +C L +
Sbjct: 295 YRQKRDILVNALNESR-LEILPCEGTYFLLVDYS----------AVSTLDDVEFCQWLTQ 343
Query: 405 ATGISTVPGSGFGQKE 420
G++ +P S F
Sbjct: 344 EHGVAAIPLSVFCADP 359
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 68/376 (18%), Positives = 117/376 (31%), Gaps = 100/376 (26%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGAS 140
P + A+ ++ GG+ Y G +R+ +A R G DPE + +T GA+
Sbjct: 40 PPKMLQAAQDAIA---GGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGAT 96
Query: 141 KGVMQTLNCVIRGEGDGVVLL-----------------------------FHTTWKRQQI 171
+ + + ++ G V+L+ F
Sbjct: 97 EAIAAAVLGLVE-PGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDA----- 150
Query: 172 GVLIINDLQQSVAQARSKGITVRA-MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLL 229
++ +A +T R +IIN P NPTG LS L I NLV++
Sbjct: 151 ---------DALRRA----VTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVI 197
Query: 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKE--VQLVSFHTVSKGY----WGECGQRG 283
DEVY+ ++ D + G E + + S +K + W +
Sbjct: 198 TDEVYEHLVF-DHARHLPL------AGFDGMAERTITISSA---AKMFNCTGW-----KI 242
Query: 284 GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
G+ P + + + ++ P Q + L D
Sbjct: 243 GW---ACGPAELIAGVRAAKQYLSYVGGAPFQP---AVALALDTEDAWVAALRNS----- 291
Query: 343 ESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402
LR R + G + + G + R G +C L
Sbjct: 292 --LRARRDRLAAGLTEIG-FAVHDSYGTYFLCADPR----------PLGYDDSTEFCAAL 338
Query: 403 LEATGISTVPGSGFGQ 418
E G++ +P S F
Sbjct: 339 PEKVGVAAIPMSAFCD 354
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 1e-20
Identities = 53/373 (14%), Positives = 115/373 (30%), Gaps = 65/373 (17%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGAS 140
P+ + Y+ G P + K ++ + DP I + GA
Sbjct: 38 PSYVKEELSKAA--FIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAY 95
Query: 141 KGVMQTLNCVIRGEGDGVVLL--------------------FHTTWKRQQIGVLIINDLQ 180
+ ++ ++ GD V+++ K +D
Sbjct: 96 GSLFNSIQGLVD-PGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWT 154
Query: 181 QSVAQARSKGITVRA-MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238
+ SK + + +I+N P NP G+ + L+ I C + + + + DEVY+ +
Sbjct: 155 FDPRELESK-FSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLV 213
Query: 239 YQDERPFVSSKKVLMDMGLPFSKE--VQLVSFHTVSKGY----WGECGQRGGYFEMTNIP 292
Y V LP E + + S K + W + G+ + P
Sbjct: 214 Y-TGHTHVKI------ATLPGMWERTITIGSA---GKTFSVTGW-----KLGW---SIGP 255
Query: 293 PKTVDEIYKIAS-IALSPNVPAQ----IFMGLMVNPLKPGDISYEQFVRESKGILESLRR 347
+ + + + P Q + + + + + +E L
Sbjct: 256 AHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKE-------LEV 308
Query: 348 RARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG 407
+ M NS + +G + + A + + + D + + +
Sbjct: 309 KRDRMVRLLNSVG-LKPIVPDGGYFIIADVS-SLGADLSDMNSDEPYDYKFVKWMTKHKK 366
Query: 408 ISTVPGSGFGQKE 420
++ +P S F +
Sbjct: 367 LTAIPVSAFCDSK 379
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 1e-20
Identities = 64/396 (16%), Positives = 127/396 (32%), Gaps = 88/396 (22%)
Query: 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGA 139
P +L Y +E A + E R G DP G+
Sbjct: 37 LPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS 96
Query: 140 SKGVMQTLNCVIRGEGDGVVLL-----FHTTWKRQQIGVLI--------------INDLQ 180
+G+ L + D ++L + + + DL+
Sbjct: 97 QEGLAHLLLALT-EPEDLLLLPEVAYPSYFG------AARVASLRTFLIPLREDGLADLK 149
Query: 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ + +++ P NPTG E L + L L+ D Y +Y+
Sbjct: 150 AVPEGVWRE---AKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYE 206
Query: 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY----WGECGQRGGYFEMTNI-PPKT 295
E P + LP +KE V ++SK Y + R G+ + +
Sbjct: 207 GEAPSPLA--------LPGAKERV-VELFSLSKSYNLAGF-----RLGFA----LGSEEA 248
Query: 296 VDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDI----SYEQFVRESKGILESLRRRARM 351
+ + ++ I + + + ++ VR R RA
Sbjct: 249 LARLERVKG---------VIDFN-QYAGVLRMGVEALKTPKEVVRG---YARVYRERALG 295
Query: 352 MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV 411
M + +++ MY + ++ P+ ++ + + LRL+E G++
Sbjct: 296 MAEALKGVLSLLPP--RATMYLWGRL---PEGVDDLE---------FGLRLVER-GVALA 340
Query: 412 PGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKKF 446
PG GFG +G +R ++ E++ + ++
Sbjct: 341 PGRGFGPGGKG--FVRIALVRPLEELLEAAKRIREA 374
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 3e-20
Identities = 60/403 (14%), Positives = 124/403 (30%), Gaps = 91/403 (22%)
Query: 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGA 139
P +LT Y G ++ + +F +R+ D E + + G
Sbjct: 59 GPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGT 118
Query: 140 SKGVMQTLNCVIRGEGDGVVLL------FHTTWKRQQIGVLI---------------IND 178
G++ CVI GD VLL + GVL+ + D
Sbjct: 119 KNGLVAVPTCVI-NPGD-YVLLPDPGYTDYLA------GVLLADGKPVPLNLEPPHYLPD 170
Query: 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238
+ +Q K + + + P NPTG ++ E + + ++ D Y
Sbjct: 171 WSKVDSQIIDK---TKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFG 227
Query: 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY----WGECGQRGGYFEMTNI--P 292
+ + P + + K+V + +++SKGY + R G+
Sbjct: 228 FDAKNPSILA--------SENGKDVA-IEIYSLSKGYNMSGF-----RVGF-----AVGN 268
Query: 293 PKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDI----SYEQFVRESKGILESLRRR 348
+ + K + G M L+ I Y+ F+ E + R
Sbjct: 269 KDMIQALKKYQT---------HTNAG-MFGALQDAAIYALNHYDDFLEE---QSNVFKTR 315
Query: 349 ARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGI 408
++ +G +Y + + + + + L++ I
Sbjct: 316 RDRFEAMLAKA-DLPFVHAKGGIYVWLETPPGYDSEQ------------FEQFLVQEKSI 362
Query: 409 STVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450
PG FG+ ++R ++ ++ + + +
Sbjct: 363 LVAPGKPFGENGNR--YVRISLALDDQKLDEAAIRLTELAYLY 403
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 8e-20
Identities = 64/408 (15%), Positives = 128/408 (31%), Gaps = 66/408 (16%)
Query: 103 YSDSRGIPGVRKEVAEFIERR--DGYPSDPEL-IFLTDGASKGVMQTLNCVIRG----EG 155
R + K + F++ + +F T+G + ++ + + +G
Sbjct: 134 PVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKG 193
Query: 156 DGV-------------VLLFHTTWKRQQIGVLIINDLQQSVAQARSKGIT--VRAMVIIN 200
D + L + ND + + K ++A++++N
Sbjct: 194 DKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIE-KLKDPSIKALIVVN 252
Query: 201 PGNPTGQCLSEANLREILRFCYQ-ENLVLLGDEVYQQNIYQDERPFVSSKK--VLMDMGL 257
P NPT + L I + + L+++ DEVY + + + +L+
Sbjct: 253 PTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVY-S- 310
Query: 258 PFSK--------------EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303
+SK + V ++ E Q + + P + I ++
Sbjct: 311 -YSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLC 369
Query: 304 SIALSP--------NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG 355
+ + S + P QI L + + + R + D
Sbjct: 370 ADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDA 429
Query: 356 FNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVF----YCLRLLEATGISTV 411
+ T YS I + I + + + F + L+L E G+ V
Sbjct: 430 MQA--PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLV 487
Query: 412 PGSGFGQKEGIFHLR----TTILPAEEDMPAIMESFKKFNDEFMEQYE 455
G GFG K G LR ED I + + E+ E+++
Sbjct: 488 DGVGFGAKPG--ELRVSQANLP---TEDYALIGKQVLELLKEYYEEFK 530
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 8e-20
Identities = 77/402 (19%), Positives = 147/402 (36%), Gaps = 92/402 (22%)
Query: 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGA 139
P K YS SRGIP +R+ ++ + R DPE +T G+
Sbjct: 49 GPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGS 108
Query: 140 SKGVMQTLNCVIRGEGDGVVLLF------HTTWKRQQIGVLI----------------IN 177
+G+ + + GD +L+ H G +I N
Sbjct: 109 KEGLAHLMLATL-DHGD-TILVPNPSYPIHIY------GAVIAGAQVRSVPLVPGIDFFN 160
Query: 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237
+L++++ ++ K R M++ P NPT QC+ ++ Q +++++ D Y
Sbjct: 161 ELERAIRESIPK---PRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADI 217
Query: 238 IYQDERP--FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY----WGECGQRGGYFEMTNI 291
+Y + + +P +K++ V F T+SK Y W R G+ +
Sbjct: 218 VYDGWKAPSIMQ---------VPGAKDIA-VEFFTLSKSYNMAGW-----RIGF-----M 257
Query: 292 --PPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDI----SYEQFVRESKGILESL 345
P+ V + +I S G PL+ I +Q VR+ I
Sbjct: 258 VGNPELVSALARIKS---------YHDYG-TFTPLQVAAIAALEGDQQCVRD---IARQY 304
Query: 346 RRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEA 405
++R ++ G + + +MY + +I + + + + +LL+
Sbjct: 305 QQRRDVLVKGLREA-GWMVENPKASMYVWAKIP---------EPYAHLGSLEFAKKLLQD 354
Query: 406 TGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKKF 446
+S PG GFG + H+R ++ + + + K
Sbjct: 355 AKVSVSPGIGFGDYGDD--HVRFALIENRDRLRQAVRGIKAM 394
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-19
Identities = 66/375 (17%), Positives = 121/375 (32%), Gaps = 65/375 (17%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGAS 140
P A+ +H +S L Y+ + G P + K +A F G DP + +T G
Sbjct: 43 PDFAVEAFQHAVS-GDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGY 101
Query: 141 KGVMQTLNCVIRGEGDGVVLL--FH-------------------TTWKRQQIGVLIINDL 179
+ ++ EGD V+++ F Q + ++
Sbjct: 102 GALFTAFQALVD-EGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNW 160
Query: 180 QQSVAQARSKGITVRA-MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237
Q + K T R +++N P NP G+ S L + C Q ++V + DEVYQ
Sbjct: 161 QLDPMELAGK-FTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWM 219
Query: 238 IYQDERPFVSSKKVLMDMGLPFSKE--VQLVSFHTVSKGY----WGECGQRGGYFEMTNI 291
+Y D +S LP E + + S K + W + G+
Sbjct: 220 VY-DGHQHISI------ASLPGMWERTLTIGSA---GKTFSATGW-----KVGW---VLG 261
Query: 292 PPKTVDEIYKIAS-IALSPNVPAQ----IFMGLMVNPLKPGDISYEQFVRESKGILESLR 346
P + + + +Q + + QF + ++
Sbjct: 262 PDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQA-------MQ 314
Query: 347 RRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR-LPPKAIEAAKRAGKVPDVFYCLRLLEA 405
R M S + +G+ + I K + + D + +++
Sbjct: 315 RCRDHMIRSLQSVG-LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKN 373
Query: 406 TGISTVPGSGFGQKE 420
G+ +P S F
Sbjct: 374 KGLVAIPVSIFYSVP 388
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 5e-19
Identities = 79/333 (23%), Positives = 133/333 (39%), Gaps = 65/333 (19%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL- 161
Y+D RGI +R+ +A+ I R P+ + +T+GA + + ++ GD V++
Sbjct: 74 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIVFS 132
Query: 162 -FHTTWKRQQI---GVLII------NDLQQSVAQARSKGITVRA-MVIIN-PGNPTGQCL 209
++ Q I G + + + Q S+ + + + V+IN P NPTG
Sbjct: 133 PVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGL-LVGKTKAVLINSPNNPTGVVY 191
Query: 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269
L ++R + N ++ DEVY +Y DE F S + + + ++V +
Sbjct: 192 RREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE--FTSI------LDVSEGFD-RIVYIN 242
Query: 270 TVSKGY----WGECGQRGGYFEMTNIPPKTVDEIYKIASIALS-PNVPAQIFMGLMVNPL 324
SK + W R GY K + KI S S N AQ + L
Sbjct: 243 GFSKSHSMTGW-----RVGY---LISSEKVATAVSKIQSHTTSCINTVAQY---AALKAL 291
Query: 325 KPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAI 384
+ D SY ++++ + R + + V EGA Y F ++
Sbjct: 292 E-VDNSY---------MVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKV------- 333
Query: 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417
+ DV +C RLLE ++ VPGS F
Sbjct: 334 -------RGDDVKFCERLLEEKKVALVPGSAFL 359
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 8e-19
Identities = 57/393 (14%), Positives = 117/393 (29%), Gaps = 81/393 (20%)
Query: 80 VFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGA 139
F + L + L Y S +R F +RR + T G+
Sbjct: 34 QFETPKFIQDA--LKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGS 91
Query: 140 SKGVMQTLNCVIRGEGDGVVLL---FHTTWKRQQIGVLI----------------INDLQ 180
+ + + V+ + + F+ + + L
Sbjct: 92 REVLFNFPSFVLFDYQNPTIAYPNPFYQIY---EGAAKFIKAKSLLMPLTKENDFTPSLN 148
Query: 181 QSVAQARSKGITVRAMVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+ Q +VI+N P NPTG+ LS L ++ + + +L+ DE Y + IY
Sbjct: 149 EKELQ-EVD------LVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSE-IY 200
Query: 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY----WGECGQRGGYFEMTNIPPKT 295
++ P S + M G + + ++ H++SK R G F + +
Sbjct: 201 ENTPP-PSLLEACMLAG-NEAFKN-VLVIHSLSKRSSAPGL-----RSG-FIAGD--SRL 249
Query: 296 VDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354
+++ + + + Q ++ + I
Sbjct: 250 LEKYKAFRAYLGYTSANAIQKASEAAWLD--------DRHAEFFRNIYA--NNLKLARKI 299
Query: 355 GFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414
N + Y + + AK L + GI T+P
Sbjct: 300 FKN------TLIYPYSFYVYLPV---QNGENFAK------------TLYQNEGIITLPAL 338
Query: 415 GFGQKE-GIFHLRTTILPAEEDMPAIMESFKKF 446
G+ G ++R ++ + +E + +
Sbjct: 339 YLGRNRIGADYVRLALVYDTPLLEKPLEIIETY 371
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 9e-19
Identities = 66/414 (15%), Positives = 129/414 (31%), Gaps = 81/414 (19%)
Query: 103 YSDSRGIPGVRKE-VAEFIERRDGY---PSDPELIFLTDGASKGVMQTLNCVIR----GE 154
Y + + ++ V ++I R G PS+ +F +G + + +
Sbjct: 134 YPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKA 193
Query: 155 GDGV-------------VLLFHTTWKRQQIGVLIINDLQQSVAQARSKGIT--VRAMVII 199
GD V L + I + Q ++ K ++ +
Sbjct: 194 GDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELD-KLKDPAIKIFFCV 252
Query: 200 NPGNPTGQCLSEANLREILRFC--YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257
NP NP + + +L + ++ +L++L D+VY F S + +
Sbjct: 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFAD----DFQSLFAICPE--- 305
Query: 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYF----------EMTNIPPKTVDEIYKIASIAL 307
+ ++ SK + G G R G + + + +L
Sbjct: 306 ------NTLLVYSFSKYF-GATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYR-SL 357
Query: 308 SPNVPAQIFMGLMVNPLKP------GDISYEQFVRESKGILESLRRRA---RMMTDGFNS 358
P+V + F+ +V + +S Q V+ + L +L A +
Sbjct: 358 LPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIR 417
Query: 359 CRNVV--------CNFTEGAM--YSFPQIRLPPKAIEAAKRAGKVP----DVFYCLRLLE 404
R E A+ Y+ ++ + + R+ +
Sbjct: 418 RRETTLYRELGMPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIAD 477
Query: 405 ATGISTVPGSGFGQKEGIFHLRT---TILPAEEDMPAIMESFKKFNDEFMEQYE 455
TGI +PG GFG R + E + AI + +K DE +Y
Sbjct: 478 ETGIVLLPGRGFGSNRP--SGRASLANLN--EYEYAAIGRALRKMADELYAEYS 527
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 69/444 (15%), Positives = 132/444 (29%), Gaps = 104/444 (23%)
Query: 29 RASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVV-ALCQAPFLLDDPNVGIVFPADAIA 87
L+ +I ++G+ +PL V A + + +
Sbjct: 24 AQFRLENPQHTVINLSIGDT----TQPL--NASVAEAFASS---IARLS----------- 63
Query: 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTL 147
+ Y G+P +R++++E R D + IF++DGA + + L
Sbjct: 64 --------SPTTCRGYGPDFGLPALRQKLSEDFYRGF---VDAKEIFISDGAKVDLFRLL 112
Query: 148 NCVIRGEGDGVVLL------FHTTWKRQQIGVLII-------------NDLQQSVAQARS 188
G V + + + N +
Sbjct: 113 --SFFGPNQ-TVAIQDPSYPAYLD------IARLTGAKEIIALPCLQENAFFPEFPEDTH 163
Query: 189 KGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP--FV 246
+ + + +P NPTG L++ LR I+ + + +++L D Y I P
Sbjct: 164 ----IDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIF 219
Query: 247 SSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIA 306
+P ++ + ++ SK G G R G+ + P+ + I
Sbjct: 220 E---------IPDARFC-AIEINSFSKPL-GFAGIRLGW----TVIPQELTYADGHFVIQ 264
Query: 307 LSPNVPAQIFMGLMVNPLKPGDI---SYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363
+ F G P + + S + R + ++ +
Sbjct: 265 DWERFLSTTFNG-ASIPAQEAGVAGLSILP----QLEAIHYYRENSDLLRKALLAT-GFE 318
Query: 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGI 422
E A Y + + I L I+ PG GFG+ G
Sbjct: 319 VFGGEHAPYLWVKP--TQANISDRD---------LFDFFLREYHIAITPGIGFGRSGSG- 366
Query: 423 FHLRTTILPAEEDMPAIMESFKKF 446
+R + L ED+ A E +
Sbjct: 367 -FVRFSSLGKREDILAACERLQMA 389
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 54/438 (12%), Positives = 112/438 (25%), Gaps = 101/438 (23%)
Query: 25 ELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPAD 84
+L + K + + GNP + ++ D+
Sbjct: 19 QLMDDLGDALKSDQPVNMLGGGNPA-----KIDAVNELFLETYKALGNDND--------- 64
Query: 85 AIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVM 144
S + YS+ +G + F R + E I LT+G+
Sbjct: 65 ----TGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFF 120
Query: 145 QTLNCVIR-------------GEGDGVVLLFHTTW------------------------- 166
N ++L +
Sbjct: 121 YLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTH 180
Query: 167 ---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223
+ + L+ A + + A+ P NPTG L++ + + +
Sbjct: 181 DGEEGFFKYRVDFEALENLPALKEGR---IGAICCSRPTNPTGNVLTDEEMAHLAEIAKR 237
Query: 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG 283
++ L+ D Y + + + + ++SK G G R
Sbjct: 238 YDIPLIIDNAYGMPFP--NIIYSDAHLNWDN---------NTILCFSLSK--IGLPGMRT 284
Query: 284 GYFEMTNIPPKTVDEIYKIASIA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342
G K ++ + + ++ L+P + + I + E I
Sbjct: 285 GIIVA---DAKVIEAVSAMNAVVNLAPTRFGAAIATPL---VANDRIK-QLSDNE---IK 334
Query: 343 ESLRRRARMMTDGFN---SCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYC 399
+++A + ++ + EGA++ + I
Sbjct: 335 PFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWL--WFKDLPISTLD---------LY 383
Query: 400 LRLLEATGISTVPGSGFG 417
RL G VP F
Sbjct: 384 ERLKAK-GTLIVPSEYFF 400
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 9e-18
Identities = 87/475 (18%), Positives = 152/475 (32%), Gaps = 116/475 (24%)
Query: 11 MNENVKKVQYAVRGELYL--------RASELQKEGKKIIFTNVGNPHALGQRPLTFPRQV 62
NEN K++ YL +A + + KII +G+ PL P+ +
Sbjct: 39 RNENFGKLR-----AGYLFPEIARRRKAHQEKNPDAKIISLGIGDT----TEPL--PKYI 87
Query: 63 V-ALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIE 121
A+ +A T G Y +G +R+ VA
Sbjct: 88 ADAMAKA---AAGLA-------------------TREGYSGYGAEQGQGALREAVASTFY 125
Query: 122 RRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE------------GDGVVLLFHTTWKRQ 169
G +D E IF++DG+ + + D V++ T
Sbjct: 126 GHAGRAAD-E-IFISDGSKCDIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNG 183
Query: 170 QIGVLII-------NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222
I N +++A+ + +P NPTG + A L E++ F
Sbjct: 184 TGFDGIEYMVCNPDNHFFPDLSKAK----RTDIIFFCSPNNPTGAAATRAQLTELVNFAR 239
Query: 223 QENLVLLGDEVYQQNIYQDERP--FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280
+ +L+ D Y I + P +P + EV + + SK G G
Sbjct: 240 KNGSILVYDAAYALYISNPDCPKTIYE---------IPGADEVA-IETCSFSKYA-GFTG 288
Query: 281 QRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDI-----SYEQFV 335
R G+ + PK + A V F G N ++ G + + +
Sbjct: 289 VRLGW----TVVPKALKYANGEPVHADWNRVMTTCFNG-ASNIVQAGGLACLQPEGLKEM 343
Query: 336 RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395
+++ + A+++ F + A Y + P
Sbjct: 344 NA---MIKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWV----------------GFPG 383
Query: 396 VF---YCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKKF 446
+LE I T PGSG+G EG +R + + E++ + FK+
Sbjct: 384 KPSWDVFAEILERCNIVTTPGSGYGPAGEG--FVRASAFGSRENILEAVRRFKEA 436
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 1e-17
Identities = 78/346 (22%), Positives = 129/346 (37%), Gaps = 82/346 (23%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGV---- 158
Y + G P +R+ +A+ ++R +G + I +T+G + + + +I GD V
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVIIPA 121
Query: 159 ---------VLLFHTTWKRQQIGVLII------NDLQQSVAQARSKGITVRA-MVIIN-P 201
V L G +I + S Q R + IT + +++ N P
Sbjct: 122 PFWVSYPEMVKLAE--------GTPVILPTTVETQFKVSPEQIR-QAITPKTKLLVFNTP 172
Query: 202 GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261
NPTG + +R I + + L +L DE+Y++ +Y D+ +S +
Sbjct: 173 SNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILY-DDAQHLSIGAASPEA-----Y 226
Query: 262 EVQLVSFHTVSKGY----WGECGQRGGYFEMTNIPPKTVDEIYKIASIALS-PNVPAQI- 315
E + V +K Y W R G+ P V KI + S AQ
Sbjct: 227 E-RSVVCSGFAKTYAMTGW-----RVGF---LAGPVPLVKAATKIQGHSTSNVCTFAQYG 277
Query: 316 ----FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAM 371
+ D V+E + R R M D N+ + C +GA
Sbjct: 278 AIAAYEN-------SQD-----CVQEML---AAFAERRRYMLDALNAMPGLECPKPDGAF 322
Query: 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417
Y FP I K + + +C LL+ ++TVPG+ FG
Sbjct: 323 YMFPSIA---KTGRS--------SLDFCSELLDQHQVATVPGAAFG 357
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 72/334 (21%), Positives = 134/334 (40%), Gaps = 61/334 (18%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL- 161
Y+ GIP +R+ +AE R +G PE +T G S+ + ++ GD V++L
Sbjct: 64 YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLS 122
Query: 162 -FHTTWKRQQI----GVLII------NDLQQSVAQARSKGITVRA-MVIIN-PGNPTGQC 208
+ ++ + + GV++ + R + IT R +++N P NPTG
Sbjct: 123 PYWVSYP-EMVRFAGGVVVEVETLPEEGFVPDPERVR-RAITPRTKALVVNSPNNPTGAV 180
Query: 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSF 268
+ L + R + + L+ DE+Y+ +Y+ E S + E ++
Sbjct: 181 YPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE--HFSP--------GRVAPE-HTLTV 229
Query: 269 HTVSKGY----WGECGQRGGYFEMTNIPPKTVDEIYKIASIALS-PNVPAQIFMGLMVNP 323
+ +K + W R GY P + + + ++ + + P+ AQ +
Sbjct: 230 NGAAKAFAMTGW-----RIGY---ACGPKEVIKAMASVSRQSTTSPDTIAQW---ATLEA 278
Query: 324 LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383
L + FV ++ E+ RRR ++ +G + + GA Y
Sbjct: 279 LT-NQEASRAFVEMAR---EAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDT------ 327
Query: 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417
+ A +V RLLEA G++ VPG+ F
Sbjct: 328 ---SPIAPD--EVRAAERLLEA-GVAVVPGTDFA 355
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 84/478 (17%), Positives = 149/478 (31%), Gaps = 119/478 (24%)
Query: 10 SMNENVKKVQYAVRGELYL--------RASELQKEGKKIIFTNVGNPHALGQRPLTFPRQ 61
S N N+ K+Q YL A L+ ++I +G+ T P
Sbjct: 25 SRNSNMSKLQ-----AGYLFPEIARRRSAHLLKYPDAQVISLGIGDT--------TEP-- 69
Query: 62 VVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIE 121
+ + I A+A+ H LS G G Y +G +R +A+
Sbjct: 70 ---IPEV----------IT---SAMAKKAHELSTIEGYSG-YGAEQGAKPLRAAIAKTFY 112
Query: 122 RRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE------------GDGVVLLFHTTWKRQ 169
G D + +F++DGA + + D V++ T
Sbjct: 113 GGLGIGDD-D-VFVSDGAKCDISRLQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNT 170
Query: 170 QIGVLII---------NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220
+ N ++ + +P NPTG + L +++ F
Sbjct: 171 DVQKYGNIEYMRCTPENGFFPDLSTVG----RTDIIFFCSPNNPTGAAATREQLTQLVEF 226
Query: 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280
+ +++ D Y D+ P S + +P ++EV + + S G G
Sbjct: 227 AKKNGSIIVYDSAYAM-YMSDDNP-RS---IFE---IPGAEEVA-METASFSNYA-GFTG 276
Query: 281 QRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNP--------LKPGDISYE 332
R G+ + PK + + F G N L P
Sbjct: 277 VRLGW----TVIPKKLLYSDGFPVAKDFNRIICTCFNG-ASNISQAGALACLTPEG---L 328
Query: 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392
+ + + ++ + ++ D F S + A Y +
Sbjct: 329 EAMHK---VIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWV----------------H 368
Query: 393 VPD---VFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKKF 446
P+ +LE T + T PGSGFG EG +R + E++ FK+
Sbjct: 369 FPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEG--FVRVSAFGHRENILEACRRFKQL 424
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-16
Identities = 71/410 (17%), Positives = 130/410 (31%), Gaps = 122/410 (29%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK 141
P + + L Y+ G+P +R+ +AE +PE + +T GA++
Sbjct: 40 PPFLLEAVRRALG----RQDQYAPPAGLPALREALAEEFAV------EPESVVVTSGATE 89
Query: 142 GVMQTLNCVIRGEGDGVVLL-----------------------------FHTTWKRQQIG 172
+ L ++ GD VV+L F
Sbjct: 90 ALYVLLQSLVG-PGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDL------ 142
Query: 173 VLIINDLQQSVAQARSKGITVRA-MVIIN-PGNPTGQCLSEANLREILRFCYQENLVLLG 230
++ +A +T R +++N P NPTG E L I R +L L+
Sbjct: 143 --------SALEKA----LTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLIS 190
Query: 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKE--VQLVSFHTVSKGY----WGECGQRGG 284
DEVY + Y ERP F+ E + S K + R G
Sbjct: 191 DEVYDELYY-GERPRRL---------REFAPERTFTVGSA---GKRLEATGY-----RVG 232
Query: 285 YFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILE 343
+ P + + + + + S P Q + + + + YE
Sbjct: 233 W---IVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREG------ 282
Query: 344 SLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLL 403
RRR ++ G + + EG + ++ + RL+
Sbjct: 283 -YRRRRDLLAGGLRAMG-LRVYVPEGTYFLMAELP-----------------GWDAFRLV 323
Query: 404 EATGISTVPGSGFGQKEGIFHL--------RTTILPAEEDMPAIMESFKK 445
E ++ +P S F ++ L + A E + ++ S ++
Sbjct: 324 EEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSPRE 373
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 3e-16
Identities = 56/416 (13%), Positives = 117/416 (28%), Gaps = 43/416 (10%)
Query: 40 IIFTNVGNPHALGQRPLTFPRQVVALCQ-APFLLDDPNVGIVFPADAIARAKHYLSLTSG 98
+ N P + + + VV L P ++ + R +S S
Sbjct: 2 VKLENSRKPEKISNKNIPMSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSD 61
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGAS---KGVMQTLNCVIRGEG 155
P + + + ++ I + G++ + + L+ + R +
Sbjct: 62 M--TNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQP 119
Query: 156 DGVVLLFHTTWK--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213
VV + ++ + + ++ +P NP G
Sbjct: 120 VSVVAAAPF-YSTYVEETTYVRSGMYKWEGDAWGFDKKGPYIELVTSPNNPDGTIR---- 174
Query: 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEV-QLVSFHTVS 272
++ + ++ D Y Y P ++ + T S
Sbjct: 175 -ETVVNRPDDDEAKVIHDFAYYWPHY-----------------TPITRRQDHDIMLFTFS 216
Query: 273 KGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNV--PAQIFMGLMVNPLKPGDIS 330
K G G R G+ + K V + I S V +Q+ ++N LK S
Sbjct: 217 KIT-GHAGSRIGW---ALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKS 272
Query: 331 YEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390
+ K E ++ R + + A ++ L A
Sbjct: 273 ESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGT 332
Query: 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446
+ D+ L + + G G + H+R ++L E+ +E
Sbjct: 333 KEETDLV---SELRRHKVMSRAGERCGSDKK--HVRVSMLSREDVFNVFLERLANM 383
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 65/383 (16%), Positives = 108/383 (28%), Gaps = 96/383 (25%)
Query: 79 IVFPADAIARAKHYLSLTSGGLGA----YSDSRGIPGVRKEVAEFIERRDGYPSDPELIF 134
I D + + SG Y +G + +A + G+ +P+ I
Sbjct: 44 IPAMQDYFQTLLTDM-VESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIA 102
Query: 135 LTDGASKGVMQTLNCVI----RGEGDGVVL-----------------LFHTTWKRQQIGV 173
LT+G+ N G V+ LF + R I +
Sbjct: 103 LTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA--RPNIEL 160
Query: 174 LIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232
L + V M+ + P NPTG +++ L ++ R Q N+ L+ D
Sbjct: 161 LPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDN 220
Query: 233 VYQQNIYQDERPFV------------SSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280
Y S K+ + P G
Sbjct: 221 AYGVPFPGIIFSEARPLWNPNIILCMSLSKLGL----P---------------------G 255
Query: 281 QRGGYFEMTNI--PPKTVDEIYKIASIA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337
R G I KT+ I + I L+P +M +K D+ +
Sbjct: 256 SRCGI-----IIANDKTITAIANMNGIISLAPGGMGPA---MMCEMIKRNDL--LRLSET 305
Query: 338 SKGILESLRRRARMMTDGFN---SCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP 394
I +R + S + + EGA++ + I
Sbjct: 306 V--IKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWL--WFKDLPITTEL------ 355
Query: 395 DVFYCLRLLEATGISTVPGSGFG 417
+ L+A G+ VPG F
Sbjct: 356 ----LYQRLKARGVLMVPGHYFF 374
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 5e-15
Identities = 46/358 (12%), Positives = 102/358 (28%), Gaps = 60/358 (16%)
Query: 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGAS---KGVMQTLNCVIRG----EGDGVVLLF 162
+ K + E E + I G + G++ +L+ + VV
Sbjct: 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHA 162
Query: 163 HTTWK--RQQIGVL------IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214
+ R+Q + V + + ++ +P NP G
Sbjct: 163 PF-YPVFREQTKYFDKKGYVWAGNAANYVNVSNPE---QYIEMVTSPNNPEGLL------ 212
Query: 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKG 274
+ ++ +Y Y + + + + + + T+SK
Sbjct: 213 --------RHAVIKGCKSIYDMVYYWPH--YTP---------IKYKAD-EDILLFTMSK- 251
Query: 275 YWGECGQRGGYFEMTNIPPKTVDEIYKIASIALS-PNVPAQIFMGLMVNPLKPGDISYEQ 333
+ G G R G+ + + + Q+ + LK +
Sbjct: 252 FTGHSGSRFGW--ALIKDESVYNNLLNYMTKNTEGTPRETQL---RSLKVLKEVVAMVKT 306
Query: 334 FVRESKGILE----SLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAK 388
+ + LR R +T + + ++ + PP A
Sbjct: 307 QKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWV 366
Query: 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446
+ D C + + I+T G GF ++R +++ ++D +M K
Sbjct: 367 KCEWEEDKD-CYQTFQNGRINTQNGVGFEASSR--YVRLSLIKTQDDFDQLMYYLKDM 421
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 36/183 (19%), Positives = 74/183 (40%), Gaps = 23/183 (12%)
Query: 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGAS 140
P + + Y+ + GIP +R+E+A F+++ D PE I +T G
Sbjct: 49 IPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGG- 107
Query: 141 KGVMQTLNCVIRG---EGDGVV------LLFHTTWKRQQ---IGV------LIINDLQQS 182
L+ + R GD V+ + +++ GV + ++ L++
Sbjct: 108 ---TGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDNDGMRVDLLEEK 164
Query: 183 VAQARSKGITVRAM-VIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241
+ + ++KG V+ + I NP G +S + +L + +L+++ D Y Y+
Sbjct: 165 IKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEG 224
Query: 242 ERP 244
Sbjct: 225 GDI 227
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 49/386 (12%), Positives = 119/386 (30%), Gaps = 84/386 (21%)
Query: 73 DDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDG--YPSDP 130
D + A ++ + LT + Y+ +GI +R + + R + +
Sbjct: 60 KDGKM----FASSLDAMFN--DLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNM 113
Query: 131 ELIFLTDGASKGVMQTLNCVIRGEGD--------------------GVVLLFHTTWKRQQ 170
+T+ + G+ + + + D G L + + +
Sbjct: 114 SRPIVTNALTHGLSLVGDLFVN-QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD- 171
Query: 171 IGVLIINDLQQSVAQARSKGITVRAMVIIN-PGNPTGQCLSEANLREILRFC-----YQE 224
G + L +++ + ++I+N P NPTG + + I+
Sbjct: 172 -GHYTTDSLVEALQSYNKDKV----IMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGT 226
Query: 225 NLVLLGDEVYQQNIYQDE--RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY--WGECG 280
++ + D+ Y Y+D + ++ L + + +K + WG
Sbjct: 227 KVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILP------IRLDGATKEFFAWGF-- 278
Query: 281 QRGGYFEMTNIPPKTVDEIYK-----IASIALSPNVPAQ-IFMGLMVNPLKPGDISYEQF 334
R G+ T + + I S S +P Q ++ N +QF
Sbjct: 279 -RVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNN--------KQF 329
Query: 335 VRESKGILESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAG 391
+E + +++L+ R + + + + + ++
Sbjct: 330 DKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVH------------D 377
Query: 392 KVPDVFYCLRLLEATGISTVPGSGFG 417
P+ L++ I + +
Sbjct: 378 VDPEAL-RKHLIDKYSIGVIALNATD 402
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 64/370 (17%), Positives = 130/370 (35%), Gaps = 85/370 (22%)
Query: 81 FPADAIARAKHYLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGA 139
FP + I + Y ++G +R+ + +++ +R S I +T G+
Sbjct: 91 FPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKR-YGISQDNDIMITSGS 149
Query: 140 SKGVMQTLNCVIRG---EGDGVV------LLFHTTWKRQQ---IGV------LIINDLQQ 181
Q L+ + R GD VV L + + I + + + L++
Sbjct: 150 ----QQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDEGMKVEILEE 205
Query: 182 SVAQARSKGITVRAM-VIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ + +S+G V+ + + NP G ++E + +L + + +++ D+ Y + Y
Sbjct: 206 KLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYS 265
Query: 241 DERPFVSSKKVLMDMGL-----PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295
K L + G FSK ++ G+ R G+ P
Sbjct: 266 GNPE--KKIKALDNEGRVIYLGTFSK--------ILAPGF------RIGW---MVGDPGI 306
Query: 296 VDEIYKIASIA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354
+ ++ L NV Q+ + G E+ + E I + + R M +
Sbjct: 307 IRKMEIAKQSTDLCTNVFGQVVAWRY---VDGGY--LEKHIPE---IRKFYKPRRDAMLE 358
Query: 355 GFNSCRNVVCNFTEGAMYSFPQ------IRLPPK--AIEAAKRAGKVPDVFYCLRLLEAT 406
EG ++ P+ + LP + + +RA ++
Sbjct: 359 ALEE------FMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERA------------IKK- 399
Query: 407 GISTVPGSGF 416
G++ VPG F
Sbjct: 400 GVAYVPGEAF 409
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 41/219 (18%), Positives = 82/219 (37%), Gaps = 35/219 (15%)
Query: 80 VFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERR-DGYPSDPEL-IFLTD 137
P + L+ + L Y + G+P +R+ A +++RR DG D + I
Sbjct: 41 KHPTPKVITDA--LTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVL 98
Query: 138 GASKGV----MQTLNCVIRGEGDGVVL--LFHTTWKRQQIGVLI---------------I 176
G+ + + LN V G +V F+ + + L+
Sbjct: 99 GSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIY---EGATLLGGGEIHFANCPAPSFN 155
Query: 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236
D + + + + + + +P NP+G L +E+ + ++ DE Y +
Sbjct: 156 PDWRSISEEVWKR---TKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSE 212
Query: 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275
IY D + + +G S++ L+ F ++SK
Sbjct: 213 -IYFDGNKPLGCLQAAAQLGR--SRQK-LLMFTSLSKRS 247
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 8e-12
Identities = 30/188 (15%), Positives = 71/188 (37%), Gaps = 29/188 (15%)
Query: 81 FPADAIARAKHYLSLTSGGLGA--YSDSRGIPGVRKEVAEFIERRDGYPS-DPELIFLTD 137
FP +A + + YS + G P +++++ + +ER G D + + T
Sbjct: 58 FPRKELAEIAKEI-IEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV 116
Query: 138 GASKGVMQTLNCVIRG---EGDGVV------LLFHTTWKRQQ---IGV------LIINDL 179
G+ Q L+ + + + V L +++ + V + +N L
Sbjct: 117 GS----QQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVL 172
Query: 180 QQSVAQARSKGITVRA-MVIINP--GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236
++ +++ G + + + NP G S + ++ + +L ++ D+ Y
Sbjct: 173 ERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGA 232
Query: 237 NIYQDERP 244
Y+ E
Sbjct: 233 LRYEGETV 240
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 69/372 (18%), Positives = 129/372 (34%), Gaps = 97/372 (26%)
Query: 81 FPADAIARA-KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGA 139
FP + A A L YS + G +R VAE+I PE + +T G+
Sbjct: 47 FPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWIG------VRPEEVLITTGS 100
Query: 140 SKGVMQTLNCVIRG---EGDGVV------LLFHTTWKRQQ---IGV------LIINDLQQ 181
Q L+ V + EG V+ + ++ Q + V ++ L++
Sbjct: 101 ----QQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEE 156
Query: 182 SVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241
+ + R + + +I + NPTG + +L+ + LV++ D+ Y++ + +
Sbjct: 157 VLKRERPRFL----YLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGE 212
Query: 242 ERPFVSSKKVLMDMGLP--------FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293
R S L FSK +S G R + P
Sbjct: 213 ARL--PSLFELAREAGYPGVIYLGSFSK--------VLSPGL------RVAF---AVAHP 253
Query: 294 KTVDEIYKIASIA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMM 352
+ + ++ + A L + Q+ + + LK G + + + + R +A+ M
Sbjct: 254 EALQKLVQAKQGADLHTPMLNQMLVHEL---LKEG---FSERLER---VRRVYREKAQAM 304
Query: 353 TDGFNSCRNVVCNFTEGAMYSFPQ------IRLPPK--AIEAAKRAGKVPDVFYCLRLLE 404
+ + Y+ P+ + LP A +RA LE
Sbjct: 305 LHALDR------EVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRA------------LE 346
Query: 405 ATGISTVPGSGF 416
++ VPG F
Sbjct: 347 E-NVAFVPGGPF 357
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 3e-09
Identities = 78/490 (15%), Positives = 147/490 (30%), Gaps = 114/490 (23%)
Query: 12 NENVKKVQYAV-RGELY--LRAS--ELQKE-----------GKKIIFTNVGNPHALGQRP 55
N+N +Y V R + Y LR + EL+ GK + +V + + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK- 179
Query: 56 LTFPRQV----VALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPG 111
++ + C +P + + +++ D + TS + + I
Sbjct: 180 --MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--------NWTSRSDHSSNIKLRIHS 229
Query: 112 VRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLN--CVIRGEGDGVVLLFHTTWKRQ 169
++ E+ ++ + Y + L+ L + + N C + +LL TT R
Sbjct: 230 IQAELRRLLKSKP-YENC--LLVLLNVQNAKAWNAFNLSC--K------ILL--TT--RF 274
Query: 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229
+ V S T + ++ + T L+ ++ +L L
Sbjct: 275 K-----------QVTDFLSAATTTH--ISLDHHSMT---LTPDEVKSLLLKYLDCRPQDL 318
Query: 230 GDEVYQQNIYQDERPFVSS--KKVLMDMG--LPFSKEVQLVSFHTVSKG-----YWGECG 280
EV N P S + + D K V T+ + E
Sbjct: 319 PREVLTTN------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-- 370
Query: 281 QRGGYFEM------TNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPL-----KPGDI 329
R + + +IP + + I + + L L K I
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILL-SLIWFDVI---KSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGA----MYSFPQI--RLPPKA 383
S E K LE+ R + D +N + + Y + I L K
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHIGHHL--KN 483
Query: 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHL-------RTTILPAEEDM 436
IE +R VF R LE + + I + + I +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHD--STAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 437 PAIMESFKKF 446
++ + F
Sbjct: 542 ERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 4e-07
Identities = 64/430 (14%), Positives = 125/430 (29%), Gaps = 97/430 (22%)
Query: 76 NVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL 135
N VF ++R + YL L L ++ + + DG
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNV-LI-----------DGVL-------- 159
Query: 136 TDGASKGVMQTLNCVIRGEGDGVVLLFHTTW---KRQQIGVLIINDLQQSVAQARSKGIT 192
G+ K + L+ V + F W K ++ LQ+ + Q T
Sbjct: 160 --GSGKTWV-ALD-VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW-T 214
Query: 193 VRAMVIINPGNPTGQCLSEANLREILRF-CYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251
R+ N +A LR +L+ Y+ L++L V + F S K+
Sbjct: 215 SRSDHSSNIKLRIHS--IQAELRRLLKSKPYENCLLVL-LNVQNAKAW---NAFNLSCKI 268
Query: 252 LM---DMGLPFSKEVQLVSFHTVSKGYWG-ECGQRGGYF-EMTNIPPKTV-DEIYKIASI 305
L+ + + ++ + + + P+ + E+
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 306 ALS------PNVPAQI-------------FMGLMVNPLKPGDIS--YEQFV--RESKGI- 341
LS + A + +N L+P + +++ S I
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 342 ---LESL-----RRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL---PPKAIEAAKRA 390
L + + ++ + + V E S P I L E A
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHR 447
Query: 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIF-----HLRTTILPAEEDMPAIMESFKK 445
+ D + + ++ + + + HL+ I E M F+
Sbjct: 448 -SIVDHYNIPKTFDSDDLIPPYLDQY-----FYSHIGHHLK-NIEHPER-----MTLFRM 495
Query: 446 --FNDEFMEQ 453
+ F+EQ
Sbjct: 496 VFLDFRFLEQ 505
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 39/150 (26%)
Query: 294 KTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRES-----KGILESLRRR 348
+ +D I S + + K ++ ++FV E K ++ ++
Sbjct: 49 EEIDHIIM------SKDAVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTE 101
Query: 349 AR---MMTDGFNSCRNVVCNFTEGAMYSFPQIRLP-PKAIEAAKRAGKVPDVFYCLRLLE 404
R MMT + R+ + N + F + + + ++A L L
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNVSRLQPYLKLRQA--------LLELRP 149
Query: 405 ATGISTVPG-SGFGQKEGIFHLRTTILPAE 433
A + + G G G K T + +
Sbjct: 150 AKNV-LIDGVLGSG-K--------TWVALD 169
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 5e-09
Identities = 33/189 (17%), Positives = 72/189 (38%), Gaps = 42/189 (22%)
Query: 84 DAI-ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKG 142
+A+ R H G G YS + +A + + D + +
Sbjct: 48 EALNQRLMH------GVFG-YSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPS---- 95
Query: 143 VMQTLNCVIR---GEGDGVVLL------FHTT---WKRQQIGV-LIIN---------DLQ 180
V+ ++ +IR G+GVV+ F+ +R + V L L+
Sbjct: 96 VIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLE 155
Query: 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+A+ + M++ +P NPTG+ + L + C + + ++ DE++ ++
Sbjct: 156 AVLAKPE-----CKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG 210
Query: 241 DER--PFVS 247
++ P+ +
Sbjct: 211 EQPHIPWSN 219
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 8e-09
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 21/132 (15%)
Query: 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---GEGDGVVLL------FHTTW 166
AEF R GY + PE IF V++ L I V++ F
Sbjct: 67 TAEFYADRYGYQARPEWIFPIPD----VVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLL 122
Query: 167 KRQQIGVLIIN-----DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221
Q + I+ +L ++ R++++ NP NP G + L E+
Sbjct: 123 SATQREGIFIDATGGINLHDVEKGFQAG---ARSILLCNPYNPLGMVFAPEWLNELCDLA 179
Query: 222 YQENLVLLGDEV 233
++ + +L DE+
Sbjct: 180 HRYDARVLVDEI 191
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 9e-09
Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 43/189 (22%)
Query: 84 DAI-ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKG 142
AI A+ G Y+ + + + V ++ + Y D E I +G
Sbjct: 51 QAIHDYAEQ------LVYG-YTYAS--DELLQAVLDWEKSEHQYSFDKEDIVFVEG---- 97
Query: 143 VMQTLNCVIR---GEGDGVVLL------FHTT---WKRQQIGV-LIIN---------DLQ 180
V+ ++ I+ EG+ V++ F + R+ + L L+
Sbjct: 98 VVPAISIAIQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLE 157
Query: 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ + V+ ++ NP NP G+ L +I C + +++L+ DE++Q
Sbjct: 158 NDIVEND-----VKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF 212
Query: 241 DER--PFVS 247
F +
Sbjct: 213 GHEHVSFNT 221
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 43/189 (22%)
Query: 84 DAI-ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKG 142
+AI + G Y+ + + V ++ + Y E I DG
Sbjct: 81 EAIINYGRE------HIFG-YNYFN--DDLYQAVIDWERKEHDYAVVKEDILFIDG---- 127
Query: 143 VMQTLNCVIR---GEGDGVVLL------FHTT---WKRQQIGV-LIIN---------DLQ 180
V+ ++ ++ +GD V++ F T + + L I L+
Sbjct: 128 VVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLE 187
Query: 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ + V+ ++ +P NP G+ +L +I C + ++L+ DE++Q
Sbjct: 188 KDIIDNN-----VKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALF 242
Query: 241 DER--PFVS 247
+
Sbjct: 243 GNTHHSLNT 251
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 2e-08
Identities = 39/189 (20%), Positives = 69/189 (36%), Gaps = 43/189 (22%)
Query: 84 DAI-ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKG 142
++ + K G Y K VA++ E + G
Sbjct: 47 ASMEEKLKV------AAFG-YESVP--AEYYKAVADWEEIEHRARPKEDWCVFASG---- 93
Query: 143 VMQTLNCVIR---GEGDGVVLL------FHTT---WKRQQIGV-LIIN---------DLQ 180
V+ ++ ++R GD +++ F++ R+ I LI DL+
Sbjct: 94 VVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLE 153
Query: 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ +A VR MV NP NP G SE ++ I C + ++L+ DE++ +
Sbjct: 154 EKLATPS-----VRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLT 208
Query: 241 DER--PFVS 247
DE P +
Sbjct: 209 DEDITPAFT 217
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 43/189 (22%)
Query: 84 DAI-ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKG 142
+ + LG Y+ +K V ++++ R + + I T G
Sbjct: 51 EGLKKYLDE------TVLG-YTGPT--EEYKKTVKKWMKDRHQWDIQTDWIINTAG---- 97
Query: 143 VMQTLNCVIR---GEGDGVVLL------FHTT---WKRQQIGV-LIIN---------DLQ 180
V+ + +R GDGV+++ F +R+ I L+ L+
Sbjct: 98 VVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLE 157
Query: 181 QSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ +A++ +P NP G+ + L++I + +L+L DE++ I
Sbjct: 158 KLSKDKN-----NKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP 212
Query: 241 DER--PFVS 247
F S
Sbjct: 213 GYEHTVFQS 221
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-07
Identities = 30/190 (15%), Positives = 71/190 (37%), Gaps = 46/190 (24%)
Query: 84 DAI-ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKG 142
D++ R + G Y+ + + ++ RR + E + + G
Sbjct: 52 DSLKNRLEQ------EIYG-YTTRP--DSYNESIVNWLYRRHNWKIKSEWLIYSPG---- 98
Query: 143 VMQTLNCVIR---GEGDGVVLL------FHTT---WKRQQIGV-LIIN----------DL 179
V+ ++ +I D +++ F++ R+ I L D+
Sbjct: 99 VIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDI 158
Query: 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+ + V+ ++ NP NP G+ ++ L+++ C + N+ ++ DE++ I
Sbjct: 159 ENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIIL 211
Query: 240 QDER--PFVS 247
+ + P S
Sbjct: 212 KKHKHIPMAS 221
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 39/197 (19%), Positives = 62/197 (31%), Gaps = 48/197 (24%)
Query: 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTL-------------NC 149
Y GI +R+ AE + +L+ DG+S +M L
Sbjct: 72 YGGLLGIADIRELWAEALG------LPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRP 125
Query: 150 VIRGEGDGVVL-----LFH-TTWKRQQ---IGV------LIINDLQQSVAQARSKGITVR 194
E + H T + I V + +++ V + KG+
Sbjct: 126 WSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGM--- 182
Query: 195 AMVIINPGNPTGQCLSEANLREILRFCYQ-ENLVLLGDEVYQQNIYQDERPFVSSK-KVL 252
+ GNPTG SE RE+ + ++ D Y + DE P V + +
Sbjct: 183 -WTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFA 241
Query: 253 MDMGLP--------FSK 261
G P SK
Sbjct: 242 QAAGNPNRFWFMSSTSK 258
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 59/400 (14%), Positives = 117/400 (29%), Gaps = 89/400 (22%)
Query: 68 APFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP 127
+ LD A+ + + + Y GI +R+ A+ +
Sbjct: 44 SSEQLD-----FADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLGV----- 93
Query: 128 SDPELIFLTDGASKGVM-------------QTLNCVIRGEGDGVVL-----LFH-TTWKR 168
E + D +S +M ++ + E + H + +R
Sbjct: 94 -PVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITER 152
Query: 169 QQ---IGV------LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR 219
I V ++ +++ V + KG+ V+ NPTG ++E + +
Sbjct: 153 FGFEMISVPMNEDGPDMDAVEELVKNPQVKGM----WVVPVFSNPTGFTVTEDVAKRLSA 208
Query: 220 FCYQE-NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278
+ ++ D Y + DE P ++ +G + +F + SK
Sbjct: 209 METAAPDFRVVWDNAYAVHTLTDEFP---EVIDIVGLGEAAGNPNRFWAFTSTSKITLA- 264
Query: 279 CGQRGGYFEMTNIPPKTVDEIYKIASIA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337
G +F + A I + PN Q+ + +R+
Sbjct: 265 -GAGVSFFLT---SAENRKWYTGHAGIRGIGPNKVNQL---AHARYFGDAE-GVRAVMRK 316
Query: 338 SKGILESLRRRARMMTDGFNSC--RNVVCNFT--EGAMYSFPQIRLPP----KAIEAAKR 389
SL + + + +S V +T G + + + P + E AK
Sbjct: 317 ---HAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFIS--LDVVPGTASRVAELAKE 371
Query: 390 AGKVPDVFYCLRLLEATGISTVPGSGF---GQKEGIFHLR 426
A GI+ Q +LR
Sbjct: 372 A----------------GIALTGAGSSYPLRQDPENKNLR 395
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 42/202 (20%)
Query: 81 FPADAIARAKHYLS----LTSGGLGA--YSDSRGIPGVRKEVAEFIERRDGYPS------ 128
FP A YS S GIP + + + + P+
Sbjct: 46 FPFKTAVITVENGKTIQFGEEMMKRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPS 105
Query: 129 -DPELIFLTDGASKGVMQTLNCVIRG---EGDGVVLLFHT------TWKRQQ---IGV-- 173
+ +T G+ Q L V GD V+L + I V
Sbjct: 106 QGQMDLCVTSGS----QQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVAS 161
Query: 174 ----LIINDLQQSVAQARSKGITVRA-----MVIINP--GNPTGQCLSEANLREILRFCY 222
++ + L+ +++ + + + P NPTG L+ +EI
Sbjct: 162 DESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELAR 221
Query: 223 QENLVLLGDEVYQQNIYQDERP 244
+ + +++ D+ Y + R
Sbjct: 222 KYDFLIIEDDPYYFLQFNKFRV 243
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 44/236 (18%), Positives = 82/236 (34%), Gaps = 39/236 (16%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK 141
+A + + L Y + +R E+A +I ++ G + ++ +G S
Sbjct: 45 SEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANG-SN 102
Query: 142 GVMQTLNCVIRGEGDGVVL-------------LFHTTWKRQQIGVLIINDLQQSVAQARS 188
++Q L G G + HT + I V D + + A
Sbjct: 103 EILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEF----IAVSRGADFRIDMDVALE 158
Query: 189 KGITVRAMVII--NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFV 246
+ + ++ P NPTG S ++ I+ +V++ DE Y + +
Sbjct: 159 EIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVA--PGIVIV-DEAYAE--FSPSPSAT 213
Query: 247 SSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302
+ L +LV T+SK + G R GYF P +D + +
Sbjct: 214 T--------LLEKYPT-KLVVSRTMSKAF-DFAGGRLGYFVA---NPAFIDAVMLV 256
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 196 MVII-NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234
+ + P NPTG L+ I C N+ L+ DE +
Sbjct: 149 CLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAF 188
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 196 MVII-NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234
VII NP NP G +++ +L+ ++ ++ DE +
Sbjct: 147 SVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAF 186
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 463 | |||
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.98 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.98 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.97 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.97 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.97 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.97 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.97 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.97 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.97 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.97 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.97 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.97 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.97 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.97 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.97 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.97 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.97 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.97 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.96 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.96 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.96 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.96 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.96 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.96 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.96 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.96 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.96 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.96 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.96 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.96 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.96 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.96 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.96 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.96 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.96 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.96 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.96 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.96 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.96 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.96 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.96 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.96 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.96 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.95 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.95 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.95 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.95 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.95 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.95 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.95 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.95 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.95 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.95 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.95 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.95 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.95 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.95 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.95 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.95 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.94 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.94 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.94 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.94 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.94 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.94 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.94 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.93 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.93 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.93 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.93 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.93 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.93 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.93 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.93 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.93 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.93 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.93 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.93 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.93 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.93 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.93 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.93 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.93 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.93 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.93 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.93 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.92 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.92 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.92 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.92 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.92 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.92 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.92 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.92 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.92 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.92 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.92 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.92 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.91 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.91 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.91 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.91 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.91 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.91 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.91 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.91 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.9 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.9 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.9 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.9 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.9 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.9 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.89 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.89 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.89 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.89 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.89 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.88 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.88 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.87 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.87 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.87 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.87 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.86 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.86 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.86 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.85 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.85 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.85 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.85 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.84 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.74 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.82 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.81 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.81 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.81 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.8 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.8 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.78 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.76 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.7 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.7 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.7 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.61 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.55 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.52 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.49 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.48 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.44 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.39 |
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-57 Score=466.42 Aligned_cols=451 Identities=49% Similarity=0.867 Sum_probs=390.5
Q ss_pred CCCChhhhhhhhhhccchhhhhHHHHHHHHHHh-----cc----cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCC
Q 041151 4 KALDYESMNENVKKVQYAVRGELYLRASELQKE-----GK----KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDD 74 (463)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (463)
+.+++..+|+++.++.+...+.+...+++++++ |. ++|++++|+|..+|+.|..++++++.+.+.|..++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~~i~~ 100 (500)
T 3tcm_A 21 ATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQR 100 (500)
T ss_dssp CCCCGGGSCHHHHHCCCGGGSHHHHHHHHHHHHHHHSTTSSSSSSCEECSSCCGGGTTCCCCHHHHHHHHHHHSGGGGGC
T ss_pred ccCCHHHhCHHHHhhhhHhcCHHHHHHHHHHHHHhhCCCCCCHHHhhhhcCcChhhcCCCCCcHHHHHHHhhcCcccccC
Confidence 467889999999999999999999999999988 76 899999999999999999999999999999999877
Q ss_pred CCCCCCCcHHHHHHHHHHhhhcCC-CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC
Q 041151 75 PNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 75 ~~~~~~~p~~~~~a~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~ 153 (463)
+..+..+|..+++++.+.+....+ ....|+++.|..++|+++++++.+++|+++++++|++|+|+++++..++.+++.+
T Consensus 101 ~~~~~~~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~ 180 (500)
T 3tcm_A 101 EEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN 180 (500)
T ss_dssp TTHHHHSCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS
T ss_pred CCCcccCCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC
Confidence 653344699999999888877533 5689999999999999999999999999999999999999999999999999525
Q ss_pred CCCEEEEc-------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 154 EGDGVVLL-------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 154 ~gd~Vlvp-------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
+||.|+++ .|+++ ...+|++|+ +.|++.+++....+.++++|++++||||||.++|.+++
T Consensus 181 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l 259 (500)
T 3tcm_A 181 EKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLET-SDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQ 259 (500)
T ss_dssp TTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCH-HHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHH
T ss_pred CCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCH-HHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHH
Confidence 99999997 56665 334689999 99999999865555579999999999999999999999
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|+++|++++++||+||+|..+.|+++.+..++..+.++++.. .++.++|+++||||+|+|++|+|+||+++.+.+++
T Consensus 260 ~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~-~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 338 (500)
T 3tcm_A 260 YDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYG-EEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAP 338 (500)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCS-SSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTT
T ss_pred HHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccc-cCCeEEEEEecCCccCCCCCccceEEEEEeCCCHH
Confidence 99999999999999999999999885445667887776665211 12346899999999975789999999985333888
Q ss_pred HHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEe
Q 041151 295 TVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSF 374 (463)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~ 374 (463)
+++.+.+.....++++.+.|.++..+++.....+..|+.+.++.+.++++++++++++.+.|+++||+.+..|++++|+|
T Consensus 339 ~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~ 418 (500)
T 3tcm_A 339 VREQIYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVF 418 (500)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEEC
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEe
Confidence 99999888766788899999999999986554567888888888899999999999999999999999999999999999
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
+++.+|...++..+..+..++..++..+|+++||.+.||+.|+..++..++|++++.+++++++++++|++++++++++|
T Consensus 419 ~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i~~~i~~l~~~~~~~~~~~ 498 (500)
T 3tcm_A 419 PQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEY 498 (500)
T ss_dssp CEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888887666555556666677778899999999999999997567779999999888999999999999999999998
Q ss_pred cc
Q 041151 455 ED 456 (463)
Q Consensus 455 ~~ 456 (463)
++
T Consensus 499 ~~ 500 (500)
T 3tcm_A 499 RD 500 (500)
T ss_dssp CC
T ss_pred cC
Confidence 75
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-57 Score=469.92 Aligned_cols=445 Identities=45% Similarity=0.816 Sum_probs=362.5
Q ss_pred CCCChhhhhhhhhhccchhhhhHHHHHHHHHHhcc--------cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCC
Q 041151 4 KALDYESMNENVKKVQYAVRGELYLRASELQKEGK--------KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDP 75 (463)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (463)
+.+++..+|+++.++.+.+++.+...+.+++++++ ++|.+++|+|..+|+.+.+++|+++++.+.|..++..
T Consensus 21 ~~~~~~~~~~~~~~~~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~ 100 (498)
T 3ihj_A 21 QSMTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSP 100 (498)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC----------CCHHHHHHHHHHHCGGGGGCS
T ss_pred ccCCHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcc
Confidence 34566789999999999999999999999998755 8999999999999999999999999999999998643
Q ss_pred CCCCCCcHHHHHHHHHHhhhcCC-CCCccCCCCCCHHHHHHHHHHHHHhc-CCCCCCCcEEEcCCcHHHHHHHHHHHhcC
Q 041151 76 NVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRD-GYPSDPELIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 76 ~~~~~~p~~~~~a~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~-g~~~~~~~i~~t~G~~~al~~~~~~l~~~ 153 (463)
.+|..+++++.+++..... ....|+++.|.+++|++|++++.+++ |+++++++|++|+|+++++..++.+++ +
T Consensus 101 ----~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-~ 175 (498)
T 3ihj_A 101 ----SFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-S 175 (498)
T ss_dssp ----SSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-C
T ss_pred ----cCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-C
Confidence 3699999999888887532 46789999999999999999999888 499999999999999999999999997 8
Q ss_pred CCC----EEEEc-------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 154 EGD----GVVLL-------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 154 ~gd----~Vlvp-------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
+|| .|+++ .|+++ ...+|++|+ ++|++.+++... +.++++|+++|||||||.++|
T Consensus 176 ~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~-~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s 253 (498)
T 3ihj_A 176 GGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNV-NELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQS 253 (498)
T ss_dssp CCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCH-HHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCC
T ss_pred CCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCH-HHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCC
Confidence 875 99997 56655 344689999 999999987421 124899999999999999999
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
.+++++|+++|++|+++||+||+|..+.|+++.++.++..+.++++.+.++..++|+++||||+|+|++|+|+||+++..
T Consensus 254 ~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~ 333 (498)
T 3ihj_A 254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVIN 333 (498)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEES
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEec
Confidence 99999999999999999999999999999544466788776654410001334689999999998568999999998544
Q ss_pred CChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCce
Q 041151 291 IPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGA 370 (463)
Q Consensus 291 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~ 370 (463)
+++++++.+.+.....++++.+.|.++..+++++..+++.|..+.++.+.+++.|+++++++.+.|+++||+.+..|+|+
T Consensus 334 ~~~~l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg 413 (498)
T 3ihj_A 334 LHPEIKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGA 413 (498)
T ss_dssp CCHHHHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeE
Confidence 58999999988877677889999999999998765556788888888888999999999999999999999999999999
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+|+|+++.+|...+......+..++..++..+|+++||.+.||+.|+..++..++|++++.+++++++++++|+++++++
T Consensus 414 ~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 414 MYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILPPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp SEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999888887655444445555555557888999999999999999755677999999988899999999999999999
Q ss_pred HHHhc
Q 041151 451 MEQYE 455 (463)
Q Consensus 451 ~~~~~ 455 (463)
+++|+
T Consensus 494 ~~~~~ 498 (498)
T 3ihj_A 494 LEKYA 498 (498)
T ss_dssp HHHC-
T ss_pred HHHhC
Confidence 99875
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=391.62 Aligned_cols=361 Identities=22% Similarity=0.373 Sum_probs=300.7
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++..++++.++++...+.++...++++|+|+.|+|+. +. |+.+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~ 53 (385)
T 1b5p_A 3 GLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDF------------------------DT-----PEHVKEAA 53 (385)
T ss_dssp CCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSS------------------------CC-----CHHHHHHH
T ss_pred hhhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCCCC------------------------CC-----CHHHHHHH
Confidence 36889999999999999998888887788899999999985 33 78888888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.. ....|++..|..++|+++++++.+.+|+.+++++|++|+|+++++..++.+++ +|||+|+++
T Consensus 54 ~~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~ 129 (385)
T 1b5p_A 54 RRALAQ---GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLSPYWVSYP 129 (385)
T ss_dssp HHHHHT---TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHH
T ss_pred HHHHhc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhc-CCCCEEEEcCCCchhHH
Confidence 887765 34579988899999999999999889998999999999999999999999998 899999997
Q ss_pred -----cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ +. +++.+|+ +.|++++++ ++++|++++||||||.++|.+++++|+++|+++|++||+
T Consensus 130 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~ 202 (385)
T 1b5p_A 130 EMVRFAGGVVVEVETLPEEGFVPDP-ERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVS 202 (385)
T ss_dssp HHHHHTTCEEEEEECCGGGTTCCCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCEEEEeecCcccCCCCCH-HHHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 56665 22 4678999 999998876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|+.+.++ + +..++..+ +. +++|+++||||++ |++|+|+||++ +++++++.+.+... ..+++
T Consensus 203 De~~~~~~~~-~-~~~~~~~~--------~~-~~~i~~~s~SK~~-~~~G~RiG~~~---~~~~~~~~l~~~~~~~~~~~ 267 (385)
T 1b5p_A 203 DEIYEHLLYE-G-EHFSPGRV--------AP-EHTLTVNGAAKAF-AMTGWRIGYAC---GPKEVIKAMASVSRQSTTSP 267 (385)
T ss_dssp ECTTTTCBSS-S-CCCCGGGT--------CT-TTEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHTTTCSC
T ss_pred EccchhcccC-C-CCCCHHHc--------CC-CCEEEEEechhhc-CCcccceEEEE---eCHHHHHHHHHHHhhccCCC
Confidence 9999998873 3 34455433 33 5799999999999 89999999999 58899999988765 45788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..+|+. . .....+++++++.++++++.+.+.|+++ |+.+..|++++|+|++++.. +
T Consensus 268 ~~~~~~a~~~~l~~-----~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-~------- 331 (385)
T 1b5p_A 268 DTIAQWATLEALTN-----Q--EASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-A------- 331 (385)
T ss_dssp CHHHHHHHHHHHHC-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTT-C-------
T ss_pred CHHHHHHHHHHHhC-----C--CcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecCCC-C-------
Confidence 99999998888741 0 0012346678899999999999999988 89988999999999766411 1
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.+..+++..++ ++||.+.||+.|+. .+++|||++.+++++++++++|+++++
T Consensus 332 ---~~~~~l~~~l~-~~gv~v~~g~~f~~---~~~iRis~~~~~~~i~~~l~~l~~~l~ 383 (385)
T 1b5p_A 332 ---PDEVRAAERLL-EAGVAVVPGTDFAA---FGHVRLSYATSEENLRKALERFARVLG 383 (385)
T ss_dssp ---SSHHHHHHHHH-HTTEECEESGGGTC---TTEEEEECCSCHHHHHHHHHHGGGGC-
T ss_pred ---CCHHHHHHHHH-HCCeEEecccccCC---CCeEEEEecCCHHHHHHHHHHHHHHHh
Confidence 12455555554 88999999999975 348999999888999999999987764
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=373.90 Aligned_cols=364 Identities=19% Similarity=0.309 Sum_probs=293.1
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.++ ++..++++.++.+...+.++..+|+++|||+.|.|+. +. |+.+++++
T Consensus 4 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~------------------------~~-----~~~v~~a~ 53 (391)
T 3h14_A 4 KNS-SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGT------------------------GA-----PRGAVEAL 53 (391)
T ss_dssp CCC-STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSCSS------------------------CS-----CHHHHHHH
T ss_pred hhh-hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCCCC------------------------CC-----CHHHHHHH
Confidence 455 8889999999999999999999999999999999885 44 78899999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.+ ....|++..|..++|+++++++++.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 ~~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~~~~~~ 129 (391)
T 3h14_A 54 AKSLET---DALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALF-DSGDRVGIGAPGYPSYR 129 (391)
T ss_dssp HHHHC-------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHhc---CCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCCccHH
Confidence 888765 34689998899999999999999999999999999999999999999999997 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + ..++.+|+ +.|++. ++++|++++||||||.+++.+++++|+++|++||++||+
T Consensus 130 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 199 (391)
T 3h14_A 130 QILRALGLVPVDLPTAPENRLQPVP-ADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFIS 199 (391)
T ss_dssp HHHHHTTCEEEEEECCGGGTTSCCH-HHHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCEEEEeecCcccCCCCCH-HHHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 56665 2 23567899 988775 489999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|..+.++ +. ..++..+ .+++|+++|+||++ |++|+|+||++ +++++++.+.+... ..+++
T Consensus 200 De~~~~~~~~-~~-~~~~~~~----------~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~ 263 (391)
T 3h14_A 200 DEIYHGIEYE-AK-AVTALEL----------TDECYVINSFSKYF-SMTGWRVGWMV---VPEDQVRVVERIAQNMFICA 263 (391)
T ss_dssp ECTTTTCBSS-SC-CCCGGGT----------CSSSEEEEESSSTT-CCTTSCCEEEE---CCGGGHHHHHHHHHHTTCCC
T ss_pred ECcchhcccC-CC-CcChhhc----------CCCEEEEEechhcc-CCccceeEEEE---eCHHHHHHHHHHHhhhccCC
Confidence 9999998874 32 2333221 23579999999999 89999999999 58899999988775 56788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++.+++.. ..++++.+++++++++.+.+.|++++...+..|++++++|++++.+.
T Consensus 264 ~~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 324 (391)
T 3h14_A 264 PHASQVAALAALDC-----------DAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLT-------- 324 (391)
T ss_dssp CHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTC--------
T ss_pred CHHHHHHHHHHhCC-----------hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccC--------
Confidence 99999999888751 23455678889999999999999884344567889999996654211
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHHhc
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQYE 455 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~~~ 455 (463)
.+..+++..+++++||.+.||+.|+...+.+++||+++.+++++++++++|++++++....+.
T Consensus 325 ---~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~~~~~~~~~~ 387 (391)
T 3h14_A 325 ---DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLEAFMQARGEGHH 387 (391)
T ss_dssp ---SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHHHHHHHC-----
T ss_pred ---CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHHHHHHHhccccc
Confidence 135566667777789999999999874456799999998889999999999999987665443
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=368.78 Aligned_cols=365 Identities=24% Similarity=0.364 Sum_probs=301.8
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++.+++++.++.+...+.+...+|+++|||+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 53 (388)
T 1j32_A 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDF------------------------NT-----PKHIVEAAK 53 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhHhHhCCccHHHHHHHHHHHHHhcCCCEEECCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 6788999999999999999888888889999999999874 33 788999988
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ....|++..|..++|+++++++.+.+|.++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 ~~~~~---~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~ 129 (388)
T 1j32_A 54 AALEQ---GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVIIPAPFWVSYPE 129 (388)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHH
T ss_pred HHHhc---CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCChhHHH
Confidence 88765 34679988899999999999999888988889999999999999999999997 899999997
Q ss_pred ----cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ----FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ----~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|.++ +. .++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|+++|+++|+|
T Consensus 130 ~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 202 (388)
T 1j32_A 130 MVKLAEGTPVILPTTVETQFKVSP-EQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD 202 (388)
T ss_dssp HHHHTTCEEEEECCCGGGTTCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHcCCEEEEecCCcccCCCCCH-HHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 56655 22 2577899 999999876 7999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|..+.+ ++.+..++..+.++. .++++++.|+||++ |++|+|+||++ +++++++.+..... .+++++
T Consensus 203 e~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~ 271 (388)
T 1j32_A 203 EIYEKILY-DDAQHLSIGAASPEA------YERSVVCSGFAKTY-AMTGWRVGFLA---GPVPLVKAATKIQGHSTSNVC 271 (388)
T ss_dssp CTTTTCBC-TTCCCCCGGGSCHHH------HHTEEEEEESTTTT-TCTTTCCEEEE---CCHHHHHHHHHHHHTTTCSCC
T ss_pred ccchhccc-CCCCCCCHHHccccc------cCCEEEEeechhcc-CCcccceEEEE---eCHHHHHHHHHHHhhcccCCC
Confidence 99999887 344444444331111 23689999999999 89999999999 58889999887765 567888
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..+|+.. .++.++++++++++++++.+.|+++||+.+..+++++++|++++ ..
T Consensus 272 ~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--~~-------- 331 (388)
T 1j32_A 272 TFAQYGAIAAYENS----------QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA--KT-------- 331 (388)
T ss_dssp HHHHHHHHHHHHSC----------SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCG--GG--------
T ss_pred HHHHHHHHHHHhCC----------cHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecC--CC--------
Confidence 99999888887521 12345578889999999999999988999888999999996543 10
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+ .+..++...+++++||.+.||..|+. .+++||+++.+++++++++++|+++++++
T Consensus 332 ~-~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~~~~~~i~~~~~~l~~~l~~~ 387 (388)
T 1j32_A 332 G-RSSLDFCSELLDQHQVATVPGAAFGA---DDCIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp T-CCHHHHHHHHHHHHCEECEEGGGGTC---TTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCEEEeChhhhCC---CCcEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 0 12455666666668999999998875 24899999988999999999999988764
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=376.85 Aligned_cols=372 Identities=17% Similarity=0.225 Sum_probs=294.5
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+|.+..+++++.++++...+. .+++|||+.|.|+. . ...++.+.+++
T Consensus 53 ~~s~~~~~~~~s~~~~~~~~~~-----~~~~i~l~~g~p~~------------------------~---~~p~~~v~~a~ 100 (448)
T 3aow_A 53 FFSKKALEMRASEVRELLKLVE-----TSDIISLAGGLPNP------------------------K---TFPKEIIRDIL 100 (448)
T ss_dssp GCCHHHHHCCCCHHHHHHHHHH-----TSSSEECCCCCCCG------------------------G---GSCHHHHHHHH
T ss_pred HhhHHHhcCCCcHHHHHHHhcc-----CCCcEeCCCCCCCc------------------------h---hCCHHHHHHHH
Confidence 4788888899998888765432 45799999999884 0 01156777777
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+........+|++..|..+||+++++++.+.+|.+ ++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 101 ~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~-~~Gd~Vlv~~p~y~~~~ 178 (448)
T 3aow_A 101 VEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFL-NPGDIVVVEAPTYLAAL 178 (448)
T ss_dssp HHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHc-CCCCEEEEeCCChHHHH
Confidence 77776521124689998999999999999998888887 88999999999999999999997 999999997
Q ss_pred -----cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEE-EECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMV-IINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~-l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ +.+..++|+ +.|++.++.....+.++++|+ +++|+||||.+++.+++++|+++|++||++||+||
T Consensus 179 ~~~~~~g~~~~~v~~~~~g~d~-~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De 257 (448)
T 3aow_A 179 QAFNFYEPQYIQIPLDDEGMKV-EILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDD 257 (448)
T ss_dssp HHHHTTCCEEEEEEEETTEECH-HHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEeccCCCCCCH-HHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 56665 333346899 999999872111123689985 56999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
+|..+.|+ +....++..+ +..+++|+++||||++ + +|+|+||++ +++++++.+..... ..++++.
T Consensus 258 ~y~~~~~~-g~~~~~~~~~--------~~~~~vi~~~S~SK~~-~-~GlriG~v~---~~~~l~~~l~~~~~~~~~~~~~ 323 (448)
T 3aow_A 258 PYGELRYS-GNPEKKIKAL--------DNEGRVIYLGTFSKIL-A-PGFRIGWMV---GDPGIIRKMEIAKQSTDLCTNV 323 (448)
T ss_dssp SCTTCBCS-SCCCCCTGGG--------CTTSCEEEEEESTTTT-C-GGGCCEEEE---ECHHHHHHHHHHHHHHHSSCCH
T ss_pred CCccccCC-CCCCcCHHhc--------CCCCCEEEEccchhhc-c-ccccEEEEE---eCHHHHHHHHHHHHHhcCCCCH
Confidence 99999883 4444455443 4445799999999999 7 999999999 48999999987765 4677899
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC-CcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CR-NVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~p-g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.|.++..+|+. . .+..+.+++++.|+++++.+.+.|++ +| |+.+..|++++|+|++++ .+
T Consensus 324 ~~q~a~~~~L~~-----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~--~~------- 386 (448)
T 3aow_A 324 FGQVVAWRYVDG-----G---YLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLP--DG------- 386 (448)
T ss_dssp HHHHHHHHHHHT-----T---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECS--TT-------
T ss_pred HHHHHHHHHHHh-----C---CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcC--CC-------
Confidence 999999998853 1 13445667889999999999999987 57 688888999999996653 22
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+..+++..++ ++||.+.||..|+.. .+.+++||+++ .+++++++++++|++++++..
T Consensus 387 ---~~~~~l~~~l~-~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 387 ---IDSKKMLERAI-KKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIMEGIKRLAETIKEEL 446 (448)
T ss_dssp ---CCHHHHHHHHH-HTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHH-HCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12455555555 559999999998753 24569999999 578999999999999987654
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=368.86 Aligned_cols=362 Identities=15% Similarity=0.218 Sum_probs=297.0
Q ss_pred hhhhhhhccchhhhhHHHHHHHHH-HhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQ-KEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
++.++..++++++..+.....++. .+|+++|||+.|+|++ +. |+.+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a~ 52 (396)
T 3jtx_A 2 MNTLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKH------------------------PT-----PKVITDAL 52 (396)
T ss_dssp HHHHHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCS------------------------CC-----CHHHHHHH
T ss_pred hhhhhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCC------------------------CC-----CHHHHHHH
Confidence 467888899998888877665554 4578899999999886 43 88899998
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCC-cEEEcCCcHHHHHHHHHHHhcCCC-----CEEEEc-
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPE-LIFLTDGASKGVMQTLNCVIRGEG-----DGVVLL- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~-~i~~t~G~~~al~~~~~~l~~~~g-----d~Vlvp- 161 (463)
.+.+.. ...|++..|..++|+++++++.+++|++ ++++ +|++|+|+++++..++.+++ ++| |+|+++
T Consensus 53 ~~~~~~----~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~-~~g~~~~~d~vl~~~ 127 (396)
T 3jtx_A 53 TASLHE----LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL-NPVSDGIKPAIVSPN 127 (396)
T ss_dssp HHTGGG----GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC-CC---CCCCEEEEEE
T ss_pred HHHhhh----ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh-CCCCccCCCEEEEcC
Confidence 887753 4789999999999999999999999988 8899 99999999999999999997 886 799996
Q ss_pred ------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 ------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 ------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|.++ ..+++.+|+ +.|++++++ ++++|++++||||||.+++.+++++|+++|++|
T Consensus 128 p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~-~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~ 200 (396)
T 3jtx_A 128 PFYQIYEGATLLGGGEIHFANCPAPSFNPDW-RSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY 200 (396)
T ss_dssp SCCHHHHHHHHHTTCEEEEEECCTTTCCCCG-GGSCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCcHhHHHHHHHcCCEEEEeecCCCCCccCH-HHHHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence 56665 345677899 999999987 899999999999999999999999999999999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
|++||+||+|..+.++ +..+.+.......++ .+.++++++.||||+| +++|+|+||++ +++++++.+.+...
T Consensus 201 ~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~~~~~~~ 272 (396)
T 3jtx_A 201 GFIIASDECYSEIYFD-GNKPLGCLQAAAQLG---RSRQKLLMFTSLSKRS-NVPGLRSGFVA---GDAELLKNFLLYRT 272 (396)
T ss_dssp CCEEEEECTTTTCCST-TCCCCCHHHHHHHTT---CCCTTEEEEEESTTTS-SCGGGCCEEEE---ECHHHHHHHHHHHH
T ss_pred CCEEEEEccccccccC-CCCCchHHhhhhhcc---cccCcEEEEecccccc-CCcccceEEEE---eCHHHHHHHHHHHh
Confidence 9999999999998883 323344433322220 1245789999999998 89999999998 59999999988765
Q ss_pred -hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhh
Q 041151 305 -IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 305 -~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
.+++++.+.|.++..+++. ..+.++.++.++++++.+.+.|++. +.+..+++++|+|++++ .
T Consensus 273 ~~~~~~~~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~--~-- 335 (396)
T 3jtx_A 273 YHGSAMSIPVQRASIAAWDD-----------EQHVIDNRRLYQEKFERVIPILQQV--FDVKLPDASFYIWLKVP--D-- 335 (396)
T ss_dssp HHTCCCCHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHHHHHTTT--SCCCCCSSSSEEEEECT--T--
T ss_pred hcccCCCHHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHHHhc--CCccCCCeeEEEEEECC--C--
Confidence 5678899999999888752 2334567888999999999999875 45677889999996654 2
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC-----CCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ-----KEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~-----~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
.++.+++..+++++||.+.||+.|+. ..+.+++||+++.+++++++++++|++++
T Consensus 336 ---------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 336 ---------GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp ---------SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred ---------CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 12566677777888999999999986 23467999999988899999999998764
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=370.12 Aligned_cols=368 Identities=20% Similarity=0.302 Sum_probs=284.4
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++.+++++.++.+...+.+...+|+++|||+.|.|+. +. |+.+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~------------------------~~-----~~~v~~a~ 59 (412)
T 2x5d_A 9 RRFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDG------------------------PT-----PPHIVEKL 59 (412)
T ss_dssp ------------CHHHHHHHHHHHHHTTCCCEECSSCCCCS------------------------CC-----CHHHHHHH
T ss_pred chhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCC------------------------CC-----CHHHHHHH
Confidence 37888999999999988888877777899999999999874 32 78899988
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+... ..+.|++..|..++|+++++++.+.+|.++++ ++|++|+|+++++..++.+++ ++||+|+++
T Consensus 60 ~~~~~~~--~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~-~~gd~Vl~~~p~~~~~ 136 (412)
T 2x5d_A 60 CTVAQRE--DTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL-DHGDTILVPNPSYPIH 136 (412)
T ss_dssp HHTC-----------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC-CTTCEEEEEESCCHHH
T ss_pred HHHHhCC--CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhH
Confidence 8877652 35679888899999999999998888988888 799999999999999999997 899999997
Q ss_pred ------cCcee---cCC---CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW---KRQ---QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~---~~~---~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +.+ ++.+|+ +.|++++++ ++++|++++||||||.+++.+++++|+++|++||++||
T Consensus 137 ~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 209 (412)
T 2x5d_A 137 IYGAVIAGAQVRSVPLVPGIDFFNEL-ERAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVV 209 (412)
T ss_dssp HHHHHHHTCEEEEEECSTTSCHHHHH-HHHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHcCCEEEEeecCCccCCCCCH-HHHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 45555 222 455788 999988875 78999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL 307 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~ 307 (463)
+||+|..+.++ +....++..+ +. .+++++++|+||++ |++|+|+||++ +++++++.+..... .++
T Consensus 210 ~De~~~~~~~~-g~~~~~~~~~--------~~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~ 276 (412)
T 2x5d_A 210 HDLAYADIVYD-GWKAPSIMQV--------PGAKDIAVEFFTLSKSY-NMAGWRIGFMV---GNPELVSALARIKSYHDY 276 (412)
T ss_dssp EECTTTTCBCT-TCCCCCGGGS--------TTGGGTEEEEEECC-CC-SCTTSCCEEEE---ECHHHHHHHHHHHHHHCC
T ss_pred EeccccccccC-CCCCCChhhc--------cCccCcEEEEecCcccc-CCcccceEEEE---cCHHHHHHHHHHHhhhcc
Confidence 99999998873 3333444432 21 34789999999999 89999999999 48999999987765 568
Q ss_pred cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHH
Q 041151 308 SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAA 387 (463)
Q Consensus 308 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (463)
+++.+.|.++..+|+.. .++.+++++.++++++++.+.|+++ |+.+..+++++|+|++++ .+.
T Consensus 277 ~~~~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~~---- 339 (412)
T 2x5d_A 277 GTFTPLQVAAIAALEGD----------QQCVRDIARQYQQRRDVLVKGLREA-GWMVENPKASMYVWAKIP--EPY---- 339 (412)
T ss_dssp CCCHHHHHHHHHHHHSC----------SHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCSBSSEEEEECC--TTT----
T ss_pred CCCHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCeeeEEEEEcC--Ccc----
Confidence 88999999999888532 1234567888999999999999988 888888899999996553 210
Q ss_pred hhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 388 KRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 388 ~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..+..+++..+++++||.+.||..|+.. +.+++||+++.+++++++++++|+++++++
T Consensus 340 ---~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~iRis~~~~~~~l~~~l~~l~~~l~~~ 398 (412)
T 2x5d_A 340 ---AHLGSLEFAKKLLQDAKVSVSPGIGFGDY-GDDHVRFALIENRDRLRQAVRGIKAMFRAD 398 (412)
T ss_dssp ---GGGCHHHHHHHHHHHHCEECEEGGGGCGG-GTTEEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHCCEEEeCchhhCCC-CCCeEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 00024566666667789999999998642 456899999988899999999999998764
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-45 Score=365.89 Aligned_cols=363 Identities=10% Similarity=0.080 Sum_probs=275.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
++..++...+++++..+...+++.. ..++|||+.|.|.. |.. +.+. ++.+.+++
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~I~l~~G~~~d------------------~~~-~~~~-----~~~v~~a~ 56 (405)
T 3k7y_A 3 KLLSSLENIEVDNILKTAREFKEDT--CEEKINLSIGVCCN------------------DDG-DLHI-----FDSVLNAD 56 (405)
T ss_dssp CGGGGCCCCCCCHHHHHHHHHTTSS--CSSCEECSCSSCBC------------------TTS-SBCC-----CHHHHHHH
T ss_pred chhhcCCCCCCChHHHHHHHHhcCC--CcCcEEeeeeeeEC------------------CCC-CCcc-----cHHHHHHH
Confidence 4678888999998887776554332 35689999997421 000 0122 67777776
Q ss_pred HHHh-hhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--EEEcCCcHHHHHHHHHHHhcC--CCCEEEEc---
Q 041151 90 KHYL-SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL--IFLTDGASKGVMQTLNCVIRG--EGDGVVLL--- 161 (463)
Q Consensus 90 ~~~~-~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~~~--~gd~Vlvp--- 161 (463)
. .+ .. ...++|++..|.++||+++++|+.++++..+++++ |++|+|+++++.+++.+++ + | |+|+++
T Consensus 57 ~-~~~~~--~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~-~~~~-d~Vlv~~P~ 131 (405)
T 3k7y_A 57 K-LVTEN--YKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLK-MLNV-ETLYVTNPP 131 (405)
T ss_dssp H-HHHHH--CCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHH-TTTC-CEEEEESSC
T ss_pred H-HhcCC--CCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHH-hcCC-CEEEEeCCC
Confidence 6 43 22 25679999999999999999999777676677774 5999999999999999997 7 8 999997
Q ss_pred ----------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECC-CCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 ----------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINP-GNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 ----------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p-~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|+++ + .+++++|+ +.|++.+++. +++++|++++| |||||.++|.+++++|+++|++|
T Consensus 132 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~ 206 (405)
T 3k7y_A 132 YINHVNMIESRGFNLKYINFFDYNLIDINY-DLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK 206 (405)
T ss_dssp CHHHHHHHHTTTCEEEEECCEETTTTEECH-HHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHcCCeEEEEeccccccCCcCH-HHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 77776 2 33689999 9999999852 14678888755 99999999999999999999999
Q ss_pred CeEEEecccccccccCCCC-CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh--
Q 041151 225 NLVLLGDEVYQQNIYQDER-PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK-- 301 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~-- 301 (463)
+++||+||+|.++.+++.. ...++..+. ....++|+++||||+| +++|||+||++++.+++++++.+.+
T Consensus 207 ~~~vi~De~Y~~l~~~~~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~l 278 (405)
T 3k7y_A 207 KHVIIFDIAYQGFGHTNLEEDVLLIRKFE-------EKNIAFSVCQSFSKNM-SLYGERAGALHIVCKNQEEKKIVFNNL 278 (405)
T ss_dssp CCEEEEEESCTTTSSSSTTGGGHHHHHHH-------TTTCCEEEEEECTTTS-CCTTTTEEEEEEECSSHHHHHHHHHHH
T ss_pred CeEEEEecCcccccCCCcccchHHHHHHH-------hcCCcEEEEeeCCccC-CCccccceEEEEEeCCHHHHHHHHHHH
Confidence 9999999999998873211 122333332 2234899999999999 9999999998643357777666542
Q ss_pred --hhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCC---CcccccCCcee
Q 041151 302 --IAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN----SCR---NVVCNFTEGAM 371 (463)
Q Consensus 302 --~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~p---g~~~~~~~g~~ 371 (463)
... ...+++.+.|.++..++++. .....+.++++.++++|+++|+.+.+.|+ ++. ++.+..|+|||
T Consensus 279 ~~~~~~~~~~~~~~~q~~~~~~l~~~----~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~ 354 (405)
T 3k7y_A 279 CFIVRKFYSSPVIHTNRILCQLLNNQ----NLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGL 354 (405)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSS
T ss_pred HHHHhcccCCCcHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceE
Confidence 222 23456789999998888531 11234566677889999999999999999 762 27888999999
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
|+|++++ . +++..+ +++||.+.||. |||++ .++++++.++++|++++++
T Consensus 355 f~~~~l~--~---------------~~~~~L-~~~gV~v~p~~-----------Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 355 FSFVPLL--A---------------KIAEHL-KTHHIYIINNG-----------RINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp EEECGGG--G---------------GGTTTT-TTTTEECCTTS-----------EEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred EEecCCC--H---------------HHHHHH-HHCCEeecCCC-----------eEEEeccCHHHHHHHHHHHHHHHhh
Confidence 9995543 1 234455 89999999942 99998 7889999999999998763
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=375.81 Aligned_cols=373 Identities=18% Similarity=0.270 Sum_probs=288.0
Q ss_pred hhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHh
Q 041151 14 NVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYL 93 (463)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~ 93 (463)
.+...+.++|+.+...+......++++|+|+.|.|+.+|. .+. ++.+.+++.+.+
T Consensus 30 ~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~~~~g~--------------------~~~-----~~~v~~a~~~~~ 84 (427)
T 3dyd_A 30 DMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGN--------------------LPT-----DPEVTQAMKDAL 84 (427)
T ss_dssp C----------------CCCCCTTSCCEECCCSCTTTTSS--------------------SCC-----CHHHHHHHHHHH
T ss_pred hHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCCCccCC--------------------CCC-----CHHHHHHHHHHH
Confidence 3445556678877776665555678899999999874221 122 889999998888
Q ss_pred hhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------
Q 041151 94 SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------ 161 (463)
Q Consensus 94 ~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------ 161 (463)
... ....|++..|..++|+++++++.+. +.++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 85 ~~~--~~~~y~~~~g~~~lr~~la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~ 160 (427)
T 3dyd_A 85 DSG--KYNGYAPSIGFLSSREEIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLA-NPGQNILVPRPGFSLYKTLAE 160 (427)
T ss_dssp HHC--CSSSCCCTTCCHHHHHHHHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHH
T ss_pred hcC--cCCCCCCCCCcHHHHHHHHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHH
Confidence 762 4568999999999999999999765 777889999999999999999999997 899999997
Q ss_pred -cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccc
Q 041151 162 -FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234 (463)
Q Consensus 162 -~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay 234 (463)
.|.++ +..++.+|+ +.|++.+++ ++++|++++||||||.+++.+++++|+++|+++|+++|+||+|
T Consensus 161 ~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay 233 (427)
T 3dyd_A 161 SMGIEVKLYNLLPEKSWEIDL-KQLEYLIDE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIY 233 (427)
T ss_dssp HTTCEEEEEEEEGGGTTEECH-HHHHSSCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred HcCCEEEEEecccccCCCCCH-HHHHHHhcc------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCc
Confidence 56655 335678999 999999876 7999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC----hhHHHHHHhhhhhcccCC
Q 041151 235 QQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP----PKTVDEIYKIASIALSPN 310 (463)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~----~~~~~~l~~~~~~~~~~~ 310 (463)
..+.++ +....++..+ +.+.++|+++||||.| +++|+|+||+++.+.. +++++.+.......++++
T Consensus 234 ~~~~~~-g~~~~~~~~~--------~~~~~vi~~~S~sK~~-~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 303 (427)
T 3dyd_A 234 GDMVFS-DCKYEPLATL--------STDVPILSCGGLAKRW-LVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPC 303 (427)
T ss_dssp TTCBCS-SCCCCCGGGG--------CSSCCEEEEEESTTTS-SCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSC
T ss_pred hhhccC-CCcCccHHHh--------CCCCcEEEEeeccccC-CCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCC
Confidence 998883 4444455443 4445789999999998 8999999999962110 467777776654467889
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++.++|+... ..+.++++++++++++.+.+.|+++||+.+..|++++|+|+.++...- .
T Consensus 304 ~~~~~a~~~~L~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~-------~ 367 (427)
T 3dyd_A 304 TIVQGALKSILCRTP---------GEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHF-------P 367 (427)
T ss_dssp HHHHHHHHHHHHHSC---------HHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGC-------T
T ss_pred HHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhc-------C
Confidence 999999999885211 233556788899999999999999999998889999999976642100 0
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
...++.+++..+++++||.+.||..|+. .+++||+++.+++++++++++|++++++++
T Consensus 368 ~~~~~~~~~~~l~~~~gV~v~~g~~~~~---~~~iRis~~~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 368 EFENDVEFTERLVAEQSVHCLPATCFEY---PNFIRVVITVPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp TCSSHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEESCSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHCCEEEECCcccCC---CCeEEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence 0123567777777889999999998875 248999999888999999999999987654
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=365.55 Aligned_cols=356 Identities=17% Similarity=0.281 Sum_probs=289.5
Q ss_pred hhhhhhhhc--cchhhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHH
Q 041151 10 SMNENVKKV--QYAVRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADA 85 (463)
Q Consensus 10 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 85 (463)
++++++.++ .++.++++...+.++... ++++|||+.|+|+. +. |+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~v 53 (398)
T 3ele_A 3 VVNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSI------------------------PA-----PQIV 53 (398)
T ss_dssp SSCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCCS------------------------CC-----CHHH
T ss_pred chhHHHhccccCchhHHHHHHHHHHHHhhcCCCCeEEeecCCCCC------------------------CC-----CHHH
Confidence 478899888 689999998888877765 46799999998885 33 8899
Q ss_pred HHHHHHHhhhcCCC-CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEEc--
Q 041151 86 IARAKHYLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVLL-- 161 (463)
Q Consensus 86 ~~a~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlvp-- 161 (463)
.+++.+.+...... ...|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++| |+|+++
T Consensus 54 ~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~-~~g~d~vl~~~p 132 (398)
T 3ele_A 54 NDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT-SDAYDEFITIAP 132 (398)
T ss_dssp HHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CSTTCEEEEESS
T ss_pred HHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc-CCCCCEEEEeCC
Confidence 99998888762111 5789988999999999999999999999999999999999999999999997 899 999997
Q ss_pred -----------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh--
Q 041151 162 -----------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ-- 223 (463)
Q Consensus 162 -----------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~-- 223 (463)
.|.++ + .+++++|+ ++|++++++ ++++|++++||||||.+++.+++++|+++|++
T Consensus 133 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 205 (398)
T 3ele_A 133 YFPEYKVFVNAAGARLVEVPADTEHFQIDF-DALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKS 205 (398)
T ss_dssp CCTHHHHHHHHTTCEEEEECCCTTTSSCCH-HHHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHcCCEEEEEecCCcCCcCCH-HHHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhh
Confidence 56665 2 33678999 999999876 79999999999999999999999999999999
Q ss_pred ----CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh-----
Q 041151 224 ----ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK----- 294 (463)
Q Consensus 224 ----~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~----- 294 (463)
+|++||+||+|..+.++ +....... ...+++++++|+||++ |++|+|+||+++ +++
T Consensus 206 ~~~~~~~~li~De~~~~~~~~-~~~~~~~~----------~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~ 270 (398)
T 3ele_A 206 KEIGRPIFIIADEPYREIVYD-GIKVPFVT----------KYYDNTLVCYSYSKSL-SLPGERIGYVLV---PDEVYDKA 270 (398)
T ss_dssp HHHTSCCEEEEECTTTTCBCT-TCCCCCGG----------GTCSSEEEEEESTTTS-SCTTTCCEEEEC---CTTSTTHH
T ss_pred hccCCCeEEEEeccccccccC-CCCcCChH----------hhcCCeEEEEehhhcC-CCccceeEEEEE---cchhhhHH
Confidence 99999999999998883 33333322 2234789999999999 899999999994 665
Q ss_pred -HHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCcee
Q 041151 295 -TVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAM 371 (463)
Q Consensus 295 -~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~ 371 (463)
+.+.+..... ...+++.+.|.++..+++... .++.++++++++.+.|+++ |+.+..+++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---------------~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 334 (398)
T 3ele_A 271 ELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG---------------DINAYKENRDLLYEGLTRI-GYHCFKPDGAF 334 (398)
T ss_dssp HHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC---------------CHHHHHHHHHHHHHHHHHH-TCCEECCSBSS
T ss_pred HHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH---------------HHHHHHHHHHHHHHHHHHc-CCeecCCCeeE
Confidence 3334443332 245677889998888876321 2456788888999999888 88889999999
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
|+|++++ .. +..++. +.|.++||.+.||+.|+.+ +++||+++.+++++++++++|+++++++
T Consensus 335 ~~~~~~~--~~-----------~~~~~~-~~l~~~gi~v~~g~~~~~~---~~iRis~~~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 335 YMFVKAL--ED-----------DSNAFC-EKAKEEDVLIVAADGFGCP---GWVRISYCVDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp EEEEECS--SS-----------CHHHHH-HHHHTTTEECEESGGGTCT---TEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcC--CC-----------CHHHHH-HHHHHCCEEEeCccccCCC---CeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 9996553 21 234444 4678899999999999752 4899999988999999999999998765
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=373.75 Aligned_cols=381 Identities=18% Similarity=0.248 Sum_probs=302.0
Q ss_pred ChhhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 7 DYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
++..+++++..++++.++++...+ .+.++|+|+.|+|++ +. |+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~------------------------~~-----~~~v~ 47 (422)
T 3fvs_A 2 AKQLQARRLDGIDYNPWVEFVKLA-----SEHDVVNLGQGFPDF------------------------PP-----PDFAV 47 (422)
T ss_dssp --CCSCGGGTTCCCCHHHHHHHHH-----HTSCCEECCCSSCSS------------------------CC-----CHHHH
T ss_pred cchhHHHHhhccCccHHHHHHHHh-----hcCCceEeCCCCCCC------------------------CC-----CHHHH
Confidence 455688999999999888876543 345799999999985 44 88999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---- 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---- 161 (463)
+++.+.+.... ...+|++..|..++|+++++++++.+|+++++ ++|++|+|+++++..++.+++ ++||+|+++
T Consensus 48 ~a~~~~~~~~~-~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~ 125 (422)
T 3fvs_A 48 EAFQHAVSGDF-MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIIIEPFF 125 (422)
T ss_dssp HHHHHHHHSCG-GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCC
T ss_pred HHHHHHHhCCC-ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc-CCCCEEEEcCCCc
Confidence 99988887521 24789998899999999999999999999988 699999999999999999997 899999996
Q ss_pred ---------cCcee---c--C-----------CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 162 ---------FHTTW---K--R-----------QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 162 ---------~g~~~---~--~-----------~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
.|.++ + . .++.+|+ +.|++++++ ++++|++++||||||.+++.+++++
T Consensus 126 ~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~-~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~ 198 (422)
T 3fvs_A 126 DCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDP-MELAGKFTS------RTKALVLNTPNNPLGKVFSREELEL 198 (422)
T ss_dssp TTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred hhhHHHHHHcCCEEEEEecccccccccccccccCCCCCH-HHHHhhcCC------CceEEEECCCCCCCCcCCCHHHHHH
Confidence 45554 1 1 2456899 999998876 7999999999999999999999999
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
|+++|++||++||+||+|+.+.++ +..+.++..+. ...+++|+++|+||.| |++|+|+||++ ++++++
T Consensus 199 i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~-------~~~~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~ 266 (422)
T 3fvs_A 199 VASLCQQHDVVCITDEVYQWMVYD-GHQHISIASLP-------GMWERTLTIGSAGKTF-SATGWKVGWVL---GPDHIM 266 (422)
T ss_dssp HHHHHHHHTCEEEEECTTTTCBCT-TCCCCCGGGST-------TTGGGEEEEEEHHHHH-TCGGGCCEEEE---CCHHHH
T ss_pred HHHHHHHcCcEEEEEccchhhccC-CCCCCChhhcc-------cccCcEEEEecchhcc-CCccceEEEEE---eCHHHH
Confidence 999999999999999999998883 44444554431 2235789999999999 89999999999 689999
Q ss_pred HHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 297 DEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 297 ~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
+.+.+... ..++++.+.|.++..+++... ..+.....+.+++++.++++++.+.+.|+++ |+.+..|++++|+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 342 (422)
T 3fvs_A 267 KHLRTVHQNSVFHCPTQSQAAVAESFEREQ---LLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLIT 342 (422)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHHHHH---HTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEE
T ss_pred HHHHHHHhhccCCCCcHHHHHHHHHHhhcc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEE
Confidence 99987765 567889999999988874200 0000012335567888999999999999998 899889999999997
Q ss_pred eccCChhhHHHHhhcCCCC----hHHHHHHHHHhcCeEeeCCCCCCCC----CCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVP----DVFYCLRLLEATGISTVPGSGFGQK----EGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gI~v~pg~~f~~~----~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
++..... . .+.....+ +.+++..+++++||.+.||+.|+.. .+.+++|||++.+++++++++++|++++
T Consensus 343 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l 419 (422)
T 3fvs_A 343 DISDFKR--K-MPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 419 (422)
T ss_dssp ECHHHHH--H-CCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred echhhcc--c-ccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 6641100 0 00000000 3467777888899999999999742 3567999999999999999999999987
Q ss_pred HH
Q 041151 448 DE 449 (463)
Q Consensus 448 ~~ 449 (463)
++
T Consensus 420 ~~ 421 (422)
T 3fvs_A 420 VE 421 (422)
T ss_dssp HC
T ss_pred hh
Confidence 54
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=366.93 Aligned_cols=383 Identities=14% Similarity=0.201 Sum_probs=289.2
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+|+++..++++.++++...+.+. ++++|+|+.|.|+. ...|.+..... +..+ +.+ ...
T Consensus 6 ~~s~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~G~p~~-~~~p~~~~~~~---------~~~~-------~~~-~~~ 64 (425)
T 2r2n_A 6 FITAASAARNPSPIRTMTDILSRG---PKSMISLAGGLPNP-NMFPFKTAVIT---------VENG-------KTI-QFG 64 (425)
T ss_dssp GSCHHHHTCCCCSGGGHHHHHHHS---CTTCEECCCCCCCG-GGCSEEEEEEE---------ETTS-------CCE-EEC
T ss_pred HHHHHHhcCCCchHHHHHHHhhcC---CCCeEEcCCcCCCc-hhCCHHHHHHH---------Hhhc-------ccc-ccc
Confidence 589999999999999988765532 35799999999984 00010000000 0000 000 000
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCC-------CCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSD-------PELIFLTDGASKGVMQTLNCVIRGEGDGVVLL- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp- 161 (463)
..... ...+|++..|+++||++|++++.+.+|++.+ +++|++|+|+++++..++.+++ +|||+|+++
T Consensus 65 ~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~ 139 (425)
T 2r2n_A 65 EEMMK----RALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPGDNVLLDE 139 (425)
T ss_dssp HHHHH----HHTSCCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-CTTCEEEEES
T ss_pred ccchh----hhcCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-CCCCEEEEeC
Confidence 00111 1257999999999999999999988898764 3799999999999999999997 899999997
Q ss_pred ------------cCcee---cCCCcccChHHHHHHHHHHHH------hcCCceeEEEE-ECCCCCCccCCCHHHHHHHHH
Q 041151 162 ------------FHTTW---KRQQIGVLIINDLQQSVAQAR------SKGITVRAMVI-INPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 162 ------------~g~~~---~~~~~~~d~~~~l~~~l~~~~------~~~~~~~~i~l-~~p~NPtG~~~s~~~l~~l~~ 219 (463)
.|.++ +.+..++|+ +.|++.++... ..+.++++|++ ++||||||.+++.+++++|++
T Consensus 140 p~y~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~ 218 (425)
T 2r2n_A 140 PAYSGTLQSLHPLGCNIINVASDESGIVP-DSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYE 218 (425)
T ss_dssp SCCHHHHHHHGGGTCEEEEECEETTEECH-HHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCEEEEeCcCCCCCCH-HHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHH
Confidence 56665 333456899 99999987210 00126888877 499999999999999999999
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|++||++||+||+|+++.|+ +.+..++..+ +..+++|+++||||++ + +|+|+||++ +++++++.+
T Consensus 219 ~a~~~~~~li~De~~~~~~~~-g~~~~~~~~~--------~~~~~~i~~~s~SK~~-~-~GlRiG~~~---~~~~l~~~l 284 (425)
T 2r2n_A 219 LARKYDFLIIEDDPYYFLQFN-KFRVPTFLSM--------DVDGRVIRADSFSKII-S-SGLRIGFLT---GPKPLIERV 284 (425)
T ss_dssp HHHHTTCEEEEECTTGGGBSS-SSCCCCTGGG--------CTTSCEEEEEESTTTT-C-STTCCEEEE---EEHHHHHHH
T ss_pred HHHHcCCEEEEECCcccccCC-CCCCCCcccc--------CCCCCEEEEccchhhc-c-CccceEEEe---cCHHHHHHH
Confidence 999999999999999998883 4444555443 4445899999999999 7 999999999 488899999
Q ss_pred Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCc-ccccCCceeEEeee
Q 041151 300 YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CRNV-VCNFTEGAMYSFPQ 376 (463)
Q Consensus 300 ~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~-~~~~~~g~~~~~~~ 376 (463)
..... ..++++.+.|.++..+|+.. .-..+.++.+++++.|+++++.+.+.|++ +||+ .+..|++++|+|++
T Consensus 285 ~~~~~~~~~~~~~~~q~a~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~ 359 (425)
T 2r2n_A 285 ILHIQVSTLHPSTFNQLMISQLLHEW-----GEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIK 359 (425)
T ss_dssp HHHHHTTTCSSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEE
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEE
Confidence 88765 56788999999999887410 00123455677899999999999999987 6776 56778999999976
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC--CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK--EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~--~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
++ .. .++.+++...|.++||.+.||+.|+.. .+.+++||+++ .+++++++++++|++++++.
T Consensus 360 ~~--~~----------~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 424 (425)
T 2r2n_A 360 VK--GI----------NDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKES 424 (425)
T ss_dssp ET--TC----------SCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eC--CC----------CCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 64 21 124454566778899999999999863 13468999998 89999999999999988653
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=374.25 Aligned_cols=367 Identities=17% Similarity=0.260 Sum_probs=290.6
Q ss_pred ccchhhhhHHHHHHHH----HHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHh
Q 041151 18 VQYAVRGELYLRASEL----QKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYL 93 (463)
Q Consensus 18 ~~~~~~~~~~~~~~~~----~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~ 93 (463)
++++.++.+...++++ +..++++|||+.|.|+. +. |+.+.+++.+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~------------------------~~-----~~~v~~a~~~~~ 83 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSY------------------------SP-----PQFAIKEAQKAL 83 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSS------------------------CC-----CHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCC------------------------CC-----CHHHHHHHHHHH
Confidence 7788888887776655 33567899999999985 33 889999998887
Q ss_pred hhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------
Q 041151 94 SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------ 161 (463)
Q Consensus 94 ~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------ 161 (463)
... ...+|++..|.++||+++++++.+.+|..+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 84 ~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~ 160 (447)
T 3b46_A 84 DIP--MVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL-NAGDEVIVFEPFFDQYIPNIE 160 (447)
T ss_dssp TSG--GGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHH
T ss_pred hCc--CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCCchhHHHHHH
Confidence 652 35689998999999999999998888888889999999999999999999997 899999997
Q ss_pred -cCcee---c--CC-----------CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 -FHTTW---K--RQ-----------QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 -~g~~~---~--~~-----------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|+++ + .. ++.+|+ +.|++++++ ++++|++++||||||.++|.+++++|+++|++|
T Consensus 161 ~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~ 233 (447)
T 3b46_A 161 LCGGKVVYVPINPPKELDQRNTRGEEWTIDF-EQFEKAITS------KTKAVIINTPHNPIGKVFTREELTTLGNICVKH 233 (447)
T ss_dssp HTTCEEEEEEEECCGGGGTSCBCSTTSEECH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred HcCCEEEEEeCCCccccccccccccCcccCH-HHHHHhhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc
Confidence 46555 1 22 578999 999998875 799999999999999999999999999999999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC-ChhHHHHHHhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI-PPKTVDEIYKIA 303 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~-~~~~~~~l~~~~ 303 (463)
|++||+||+|..+.|+ + +..++..+.++. .+++++++|+||+| +++|+|+||++ + ++++++.+....
T Consensus 234 ~~~li~De~~~~~~~~-g-~~~~~~~~~~~~------~~~~i~i~S~sK~~-~~~G~riG~~~---~~~~~l~~~l~~~~ 301 (447)
T 3b46_A 234 NVVIISDEVYEHLYFT-D-SFTRIATLSPEI------GQLTLTVGSAGKSF-AATGWRIGWVL---SLNAELLSYAAKAH 301 (447)
T ss_dssp TCEEEEECTTTTCBCS-S-CCCCGGGSCHHH------HTTEEEEEEHHHHT-TCTTSCCEEEE---CSCHHHHHHHHHHH
T ss_pred CcEEEEeccchhcccC-C-CCcCHHHcCCCC------CCcEEEEecCchhc-CCcchhhEEEE---eCCHHHHHHHHHHH
Confidence 9999999999998884 3 333443321111 23689999999999 89999999999 7 899999998776
Q ss_pred h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCC--
Q 041151 304 S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLP-- 380 (463)
Q Consensus 304 ~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~-- 380 (463)
. ..++++.+.|.++..+|+. . ....+.+++++.++++++++.+.|+++ |+.+..|++++|+|+++...
T Consensus 302 ~~~~~~~~~~~~~a~~~aL~~-----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~ 372 (447)
T 3b46_A 302 TRICFASPSPLQEACANSIND-----A---LKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVDFSKVKI 372 (447)
T ss_dssp HHHTSSCCHHHHHHHHHHHHH-----H---HHHTHHHHHHHHHHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECTTCCC
T ss_pred hhccCCCChHHHHHHHHHHhC-----C---cchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCeeEEEEEecccccC
Confidence 4 5678899999998888741 0 113345678899999999999999988 88888899999999776421
Q ss_pred -hhhHHHHhhcC-CCChHHHHHHHHHhcCeEeeCCCCCCCCC----CCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 381 -PKAIEAAKRAG-KVPDVFYCLRLLEATGISTVPGSGFGQKE----GIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 381 -~~~~~~~~~~~-~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.+.. .....+ ..++.+++..+++++||.+.||+.|+..+ +.+++|||++.+++++++++++|++
T Consensus 373 p~~~~-~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 373 PEDYP-YPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERLKL 442 (447)
T ss_dssp CTTCC-CCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHHHHHHHHHGGG
T ss_pred ccccc-cccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 0000 000000 01245666667778999999999997531 2569999999888999999999976
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=361.34 Aligned_cols=361 Identities=23% Similarity=0.401 Sum_probs=294.6
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+|.++..++++.++.+...+.+. +++|+|+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 49 (389)
T 1gd9_A 3 LSDRLELVSASEIRKLFDIAAGM----KDVISLGIGEPDF------------------------DT-----PQHIKEYAK 49 (389)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHTC----SSCEECCCCSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhHhHhCChhHHHHHHHHHhhh----cCeEecCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 68889999999888887765432 5789999999874 32 788999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCc-EEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.. ....|++..|..++|+++++++.+.+|+++++++ |++|+|+++++..++.+++ ++||+|+++
T Consensus 50 ~~~~~---~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~ 125 (389)
T 1gd9_A 50 EALDK---GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIPTPAFVSYA 125 (389)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-CTTCEEEEEESCCTTHH
T ss_pred HHHhC---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHH
Confidence 88865 3457988889999999999999988898888999 9999999999999999997 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + ++++.+|+ +.|++.+++ ++++|++++||||||.++|.+++++|+++|++||++||+
T Consensus 126 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~ 198 (389)
T 1gd9_A 126 PAVILAGGKPVEVPTYEEDEFRLNV-DELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 198 (389)
T ss_dssp HHHHHHTCEEEEEECCGGGTTCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCCEEEEeccCCccCCCCCH-HHHHHhcCc------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45555 2 23577899 999999876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
||+|..+.++ +.+..++..+ +. .+++++++|+||++ |++|+|+||++ +++++++.+..... ..++
T Consensus 199 De~~~~~~~~-~~~~~~~~~~--------~~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~ 265 (389)
T 1gd9_A 199 DEVYEHFIYD-DARHYSIASL--------DGMFERTITVNGFSKTF-AMTGWRLGFVA---APSWIIERMVKFQMYNATC 265 (389)
T ss_dssp ECTTTTCBCT-TCCCCCGGGS--------TTCGGGEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHTTTTCS
T ss_pred ehhhhhcccC-CCCCCCHhhc--------cCCCCCEEEEecChhhc-CCcccceEEEE---ECHHHHHHHHHHHhhhccC
Confidence 9999998873 3323344332 21 34789999999999 89999999999 58899999987765 5678
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
++.+.|.++..+|+.. .. .++.++++++++++++.+.+.|+++ |+.+..+++++++|++++ ..
T Consensus 266 ~~~~~~~a~~~~l~~~-------~~-~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~------ 328 (389)
T 1gd9_A 266 PVTFIQYAAAKALKDE-------RS-WKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIR--DT------ 328 (389)
T ss_dssp CCHHHHHHHHHHHTCH-------HH-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCG--GG------
T ss_pred CCHHHHHHHHHHHhCC-------Cc-chHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEecc--CC------
Confidence 8999999999888621 11 1245678889999999999999998 888888999999996543 20
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+ .+..++...+++++||.+.||..|+. .+.+++||+++.+++++++++++|++++++
T Consensus 329 --~-~~~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~iRi~~~~~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 329 --G-LTSKKFSELMLKEARVAVVPGSAFGK-AGEGYVRISYATAYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp --T-CCHHHHHHHHHHHTCEECEEGGGGCG-GGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred --C-CCHHHHHHHHHHhCCEEEeCchhhCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 0 12455555555589999999998874 245689999998889999999999988765
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=362.53 Aligned_cols=370 Identities=26% Similarity=0.439 Sum_probs=294.5
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
..++++.+++++.++.+. .+.++.++|+++|+|+.|.|... +.+. |+.+.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~l~~~~~~~~---------------------~~~~-----~~~v~~a~ 63 (406)
T 1xi9_A 11 RASKRALSVEYAIRDVVL-PARELEKKGIKVIRLNIGDPVKF---------------------DFQP-----PEHMKEAY 63 (406)
T ss_dssp CCCHHHHTCCC--------CHHHHHHTTCCCEECCCCCGGGT---------------------TCCC-----CHHHHHHH
T ss_pred hHHHHHhcCChhHHHHHH-HHHHHHHcCCCEEEecCCCCCcC---------------------CCCC-----CHHHHHHH
Confidence 567889999999999999 88888888999999999998310 0133 78899999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.. ....|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 64 ~~~~~~---~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~Vl~~~~~~~~~~ 139 (406)
T 1xi9_A 64 CKAIKE---GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILVPGPSYPPYT 139 (406)
T ss_dssp HHHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHhc---CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCccHH
Confidence 888765 23579888899999999999999989988999999999999999999999997 899999997
Q ss_pred -----cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ + .+++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|+++|++||+
T Consensus 140 ~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~ 212 (406)
T 1xi9_A 140 GLVKFYGGKPVEYRTIEEEDWQPDI-DDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVIS 212 (406)
T ss_dssp HHHHHTTCEEEEEEEEGGGTSEECH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHcCCEEEEeecCCCcCCcCCH-HHHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 56655 2 14577899 999999876 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCce-EEEEecCCcccCCCCCceeEEEEecCCCh----hHHHHHHhhhhh
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQ-LVSFHTVSKGYWGECGQRGGYFEMTNIPP----KTVDEIYKIASI 305 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~g~~G~R~G~~~~~~~~~----~~~~~l~~~~~~ 305 (463)
||+|..+.+ ++ ...++..+ + .++ +|+++|+||++ |++|+|+||+++. +++ ++++.+......
T Consensus 213 De~~~~~~~-~~-~~~~~~~~--------~-~~~~~i~~~s~sK~~-~~~G~r~G~~~~~-~~~~~~~~l~~~l~~~~~~ 279 (406)
T 1xi9_A 213 DEIYDLMTY-EG-EHISPGSL--------T-KDVPVIVMNGLSKVY-FATGWRLGYMYFV-DPENKLSEVREAIDRLARI 279 (406)
T ss_dssp ECTTTTCBS-SS-CCCCHHHH--------C-SSSCEEEEEESTTTT-CCGGGCCEEEEEE-CTTCTTHHHHHHHHHHHHH
T ss_pred EcCcccccc-CC-CCCCHHHc--------C-CCceEEEEecccccc-CCCccEEEEEEEe-cCchhHHHHHHHHHHHHHh
Confidence 999999877 32 23455544 3 346 89999999999 8999999999821 166 888888877652
Q ss_pred cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHH
Q 041151 306 ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIE 385 (463)
Q Consensus 306 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~ 385 (463)
.++++.+.|.++.++|+... .+.+++++.++++++++.+.|+++||+.+..+++++++|++++...+
T Consensus 280 ~~~~~~~~~~a~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--- 346 (406)
T 1xi9_A 280 RLCPNTPAQFAAIAGLTGPM----------DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPW--- 346 (406)
T ss_dssp TCCSCSHHHHHHHHHHHSCC----------HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSC---
T ss_pred hcCCCHHHHHHHHHHHhCCc----------HHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCC---
Confidence 27888999999988884211 12456788899999999999999889988888999999966541001
Q ss_pred HHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 386 AAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 386 ~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+..++...+++++||.+.||..|+. .+.+++||+++.+++++++++++|+++++++.
T Consensus 347 -------~~~~~l~~~l~~~~gi~v~~g~~f~~-~~~~~lRis~~~~~~~i~~~~~~l~~~l~~~~ 404 (406)
T 1xi9_A 347 -------KNDKEFVLDVLHNAHVLFVHGSGFGE-YGAGHFRAVFLPPIEILEEAMDRFEKFMKERL 404 (406)
T ss_dssp -------SSHHHHHHHHHHHHCEECEEGGGGCG-GGTTBEEEECCSCHHHHHHHHHHHHHHHHHC-
T ss_pred -------CCHHHHHHHHHHhCCEEEeCchhcCC-CCCCEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 12455555666689999999999875 24468999999888999999999999987653
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=358.94 Aligned_cols=355 Identities=25% Similarity=0.397 Sum_probs=297.0
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
-++++++...+++.++.+...+.+..++|+++|+|+.|.|+. +. |+.+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a 62 (389)
T 1o4s_A 12 HMVSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDF------------------------PT-----PEPVVEE 62 (389)
T ss_dssp --CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSS------------------------CC-----CHHHHHH
T ss_pred HHHHHHHhhcCccHHHHHHHHHHHHHhcCCCEEEccCCCCCC------------------------CC-----CHHHHHH
Confidence 467889999999999999999988888888999999998874 33 7889999
Q ss_pred HHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 89 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
+.+.+.. ....|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 63 ~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~-~~gd~Vl~~~~~~~~~ 138 (389)
T 1o4s_A 63 AVRFLQK---GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIVFSPVWVSY 138 (389)
T ss_dssp HHHHHTT---CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTH
T ss_pred HHHHHhc---CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC-CCCCEEEEcCCCchhH
Confidence 8888765 23579888899999999999998888988889999999999999999999997 899999997
Q ss_pred ------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +. +++.+|+ +.|++++++ ++++|++++|+||||.+++.+++++|+++|+++|++||
T Consensus 139 ~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li 211 (389)
T 1o4s_A 139 IPQIILAGGTVNVVETFMSKNFQPSL-EEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYII 211 (389)
T ss_dssp HHHHHHTTCEEEEEECCGGGTTCCCH-HHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHcCCEEEEEecCCccCCCCCH-HHHHHhccc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 55555 22 3578899 999998876 79999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL 307 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~ 307 (463)
+||+|..+.++ + ...++..+ +. .+++++++|+||++ |++|+|+||++ +++++++.+..... ..+
T Consensus 212 ~Dea~~~~~~~-g-~~~~~~~~--------~~~~~~~i~~~s~sK~~-~~~G~r~G~l~---~~~~~~~~l~~~~~~~~~ 277 (389)
T 1o4s_A 212 SDEVYDSLVYT-D-EFTSILDV--------SEGFDRIVYINGFSKSH-SMTGWRVGYLI---SSEKVATAVSKIQSHTTS 277 (389)
T ss_dssp EECTTTTSBCS-S-CCCCHHHH--------CSSSTTEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTC
T ss_pred EEccccccccC-C-CCCCHhhc--------CCCCCcEEEEeechhhc-CCcccceEEEE---eCHHHHHHHHHHhhhccc
Confidence 99999998773 3 33455554 21 34689999999999 89999999999 58899999887765 467
Q ss_pred cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHH
Q 041151 308 SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAA 387 (463)
Q Consensus 308 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (463)
+++.+.|.++..+|+.. .++++++++++++++.+.|+++ |+.+..+++++++|++++ .
T Consensus 278 ~~~~~~~~a~~~~l~~~-------------~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~------ 335 (389)
T 1o4s_A 278 CINTVAQYAALKALEVD-------------NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR--G------ 335 (389)
T ss_dssp SCCHHHHHHHHHHTTCC-------------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS--S------
T ss_pred CCCHHHHHHHHHHHhcc-------------HHHHHHHHHHHHHHHHHHHHhc-CCeeecCCcceEEEEeCC--C------
Confidence 88999999998888631 2346777899999999999988 888888899999996553 1
Q ss_pred hhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 388 KRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 388 ~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+..++...+++++||.+.||..|+. + +++||+++.+++++++++++|+++++
T Consensus 336 ------~~~~l~~~l~~~~gi~v~~g~~f~~-~--~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 336 ------DDVKFCERLLEEKKVALVPGSAFLK-P--GFVRLSFATSIERLTEALDRIEDFLN 387 (389)
T ss_dssp ------CHHHHHHHHHHHHCEECEEGGGGTC-T--TEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHCCEEEeCchhcCC-C--CeEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 2455555655688999999998875 2 38999999888999999999988764
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=353.94 Aligned_cols=353 Identities=23% Similarity=0.383 Sum_probs=291.8
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..++++.++.+...+.+.+.+|+++|+|+.|.|+. +. |+.+.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 52 (370)
T 2z61_A 2 LSKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDF------------------------NT-----PKPIVDEGI 52 (370)
T ss_dssp CCHHHHHCCCCTTHHHHHHHHHHHHTTCCCEECCCCSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhhhhhccccHHHHHHHHHHHHHhcCCCEEEccCCCCCC------------------------CC-----CHHHHHHHH
Confidence 6788889999999999998888888888999999999874 32 788999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ....|++..|..++|+++++++++.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 53 ~~~~~---~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~ 128 (370)
T 2z61_A 53 KSLKE---GKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-DDGDEVLIQNPCYPCYKN 128 (370)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHH
T ss_pred HHHHc---CccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc-CCCCEEEEeCCCchhHHH
Confidence 88765 34689888899999999999999889999999999999999999999999997 899999997
Q ss_pred ----cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc
Q 041151 162 ----FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ 236 (463)
Q Consensus 162 ----~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~ 236 (463)
.|.++ ... +|+ +.|++.+++ ++++|++++||||||.+++.+ |+++|+++|++||+||+|..
T Consensus 129 ~~~~~g~~~~~v~---~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~----l~~~~~~~~~~li~De~~~~ 194 (370)
T 2z61_A 129 FIRFLGAKPVFCD---FTV-ESLEEALSD------KTKAIIINSPSNPLGEVIDRE----IYEFAYENIPYIISDEIYNG 194 (370)
T ss_dssp HHHHTTCEEEEEC---SSH-HHHHHHCCS------SEEEEEEESSCTTTCCCCCHH----HHHHHHHHCSEEEEECTTTT
T ss_pred HHHHcCCEEEEeC---CCH-HHHHHhccc------CceEEEEcCCCCCcCcccCHH----HHHHHHHcCCEEEEEcchhh
Confidence 45554 111 788 999998876 799999999999999999976 88899999999999999999
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHH
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQI 315 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~ 315 (463)
+.++ + ...++..+ + +..+++++++|+||++ |++|+|+||++ +++++++.+..... ..++++.+.|.
T Consensus 195 ~~~~-g-~~~~~~~~-~------~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (370)
T 2z61_A 195 LVYE-G-KCYSAIEF-D------ENLEKTILINGFSKLY-AMTGWRIGYVI---SNDEIIEAILKLQQNLFISAPTISQY 261 (370)
T ss_dssp CBSS-S-CCCCGGGT-C------TTCSSEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cccC-C-CCcCHHHc-c------CCCCcEEEEecChhcc-CCccceEEEEE---ECHHHHHHHHHHHhhcccCCCHHHHH
Confidence 8773 3 23344332 0 1234789999999999 89999999999 58899999988765 55688999999
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
++.++|+. . ...+.++++++++++++++.+.|+++ |+.+..+++++|+|++++ . +.
T Consensus 262 a~~~~l~~-------~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~------------~~ 317 (370)
T 2z61_A 262 AALKAFEK-------E--TEREINSMIKEFDRRRRLVLKYVKDF-GWEVNNPIGAYYVFPNIG--E------------DG 317 (370)
T ss_dssp HHGGGGSH-------H--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCCCBTTEECCBCS--S------------CH
T ss_pred HHHHHHhc-------c--CHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCcceEEEEecC--C------------CH
Confidence 98888751 0 13445678889999999999999998 888888899999995543 1 24
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.++...+++++||.+.||+.|+. .+.+++||+++.+++++++++++|+++++
T Consensus 318 ~~~~~~l~~~~gi~v~~g~~f~~-~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 318 REFAYKLLKEKFVALTPGIGFGS-KGKNYIRISYANSYENIKEGLERIKEFLN 369 (370)
T ss_dssp HHHHHHHHHHHCEECEEGGGGCG-GGSSBEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEEeCchhhCC-CCCCEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 55555655688999999999875 24568999999888999999999998764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=354.78 Aligned_cols=378 Identities=21% Similarity=0.297 Sum_probs=295.8
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.++.++..++++.++.+...+.+++..|+++|||+.|.|+..+ . .++.+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~----------------------~-----~~~~v~~a~ 58 (407)
T 2zc0_A 6 YLAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPEL----------------------I-----PRAVLGEIA 58 (407)
T ss_dssp GSCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTT----------------------S-----CHHHHHHHH
T ss_pred hhhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchh----------------------C-----CHHHHHHHH
Confidence 4788898999998888888776655567789999999887411 1 156788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+........ |++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 59 ~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~vl~~~p~~~~~~ 136 (407)
T 2zc0_A 59 KEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI-DPGDVVITENPSYINTL 136 (407)
T ss_dssp HHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHH
Confidence 887765311245 9888899999999999998888988889999999999999999999997 899999997
Q ss_pred -----cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEE-EECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMV-IINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~-l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ +.+..++|+ +.|++.++.....+.++++|+ +++|+||||.+++.+++++|+++|++||++||+||
T Consensus 137 ~~~~~~g~~~~~v~~~~~~~d~-~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De 215 (407)
T 2zc0_A 137 LAFEQLGAKIEGVPVDNDGMRV-DLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDT 215 (407)
T ss_dssp HHHHTTTCEEEEEEEETTEECH-HHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCEEEEcccCCCCCCH-HHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 56555 222235899 999999873211123688885 56999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
+|..+.++ +....++..+ +..+++++++||||++ + +|+|+||++ +++++++.+..... ..++++.
T Consensus 216 ~~~~~~~~-~~~~~~~~~~--------~~~~~~i~~~s~sK~~-~-~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~ 281 (407)
T 2zc0_A 216 AYNFMRYE-GGDIVPLKAL--------DNEGRVIVAGTLSKVL-G-TGFRIGWII---AEGEILKKVLMQKQPIDFCAPA 281 (407)
T ss_dssp TTTTSBSS-CSSCCCGGGG--------CSSCCEEEEEESTTTT-C-TTSCCEEEE---CCHHHHHHHHHHHTTTTSSSCH
T ss_pred CCcccccC-CCCCCChhhc--------CCCCCEEEEccccccc-C-CCcceEEEe---cCHHHHHHHHHHHHhhcCCCCH
Confidence 99998773 3333444433 3334789999999999 7 999999999 58899999987765 4567799
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.|.++..+++.. . +. .+.+++++.++++++++.+.|++ .||+.+..|.+++|+|++++ .+.
T Consensus 282 ~~~~~~~~~l~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~------ 345 (407)
T 2zc0_A 282 ISQYIALEYLKRG-----Y---FEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLP--EGA------ 345 (407)
T ss_dssp HHHHHHHHHHHTT-----H---HHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECS--TTC------
T ss_pred HHHHHHHHHHHcC-----C---chHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcC--CCC------
Confidence 9999998888531 1 22 34556788899999999999987 57888878888999996553 221
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+..++...+++++||.+.||..|+.. .+.+++||+++ .+++++++++++|+++++++.
T Consensus 346 ----~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 405 (407)
T 2zc0_A 346 ----DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKEKF 405 (407)
T ss_dssp ----CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHHHHC
T ss_pred ----CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHh
Confidence 24455555555559999999988653 23568999999 478999999999999987653
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=363.11 Aligned_cols=360 Identities=16% Similarity=0.207 Sum_probs=288.0
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH 91 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~ 91 (463)
++++.+++++.++.+...+.+ ..|+++|||+.|.|+. +. ++.+.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~idl~~g~~~~------------------------~~-----~~~v~~a~~~ 71 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIE--HGPLPLINMAVGIPDG------------------------PT-----PQGIIDHFQK 71 (404)
T ss_dssp CHHHHTSCCCTTC-------C--CCSSCCEECCCCSCSS------------------------CC-----CHHHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHHh--cCCCCEEecCCcCCCC------------------------CC-----CHHHHHHHHH
Confidence 788888998888877654433 3467799999999874 32 7888888888
Q ss_pred HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 92 YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 92 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
.+... ....|++..|..++|+++++++.+.+|.++++ ++|++|+|+++++..++.+++ ++||+|+++
T Consensus 72 ~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~ 148 (404)
T 2o1b_A 72 ALTIP--ENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI-NPGDYVLLPDPGYTDYLA 148 (404)
T ss_dssp HTTCH--HHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCSSHHH
T ss_pred HHhCC--CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHH
Confidence 77541 24579888899999999999998888988887 799999999999999999997 899999997
Q ss_pred ----cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 ----FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 ----~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ + .+++.+|+ +.|++++++ ++++|++++|+||||.+++.+++++|+++|+++|++||+||
T Consensus 149 ~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 221 (404)
T 2o1b_A 149 GVLLADGKPVPLNLEPPHYLPDW-SKVDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDF 221 (404)
T ss_dssp HHHHTTCEEEEEECCTTTCCCCG-GGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEEC
T ss_pred HHHHCCCEEEEeccCcccCcCCH-HHHHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 45555 2 23566899 999999976 79999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
+|..+.++ + .+.++..+. ...+++++++|+||++ |++|+|+||++ +++++++.+..... ..++++.
T Consensus 222 ~~~~~~~~-g-~~~~~~~~~-------~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~ 288 (404)
T 2o1b_A 222 AYGAFGFD-A-KNPSILASE-------NGKDVAIEIYSLSKGY-NMSGFRVGFAV---GNKDMIQALKKYQTHTNAGMFG 288 (404)
T ss_dssp TTTTCBSS-S-CCCCGGGST-------THHHHEEEEEESTTTT-TCGGGCCEEEE---ECHHHHHHHHHHHHHHCCCCCH
T ss_pred cchhcccC-C-CCCChhhcC-------CCCCCEEEEEecchhc-cCchhheEeEe---cCHHHHHHHHHHHhhccCCCCH
Confidence 99998773 3 233443321 1124689999999999 88999999998 58999999987765 5678899
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcC
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
+.|.++..+|+. ...+.+++++.++++++.+.+.|+++ |+.+..+++++|+|++++ .+
T Consensus 289 ~~~~a~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~--------- 346 (404)
T 2o1b_A 289 ALQDAAIYALNH----------YDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHAKGGIYVWLETP--PG--------- 346 (404)
T ss_dssp HHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCCBSSEEEEECC--TT---------
T ss_pred HHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCCCcceEEEEeCC--CC---------
Confidence 999999888741 13345678888999999999999998 888888899999996553 22
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
.+..+++..+++++||.+.||..|+.. +.+++||+++.+++++++++++|++++++
T Consensus 347 -~~~~~l~~~l~~~~gi~v~~g~~f~~~-~~~~iRis~~~~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 347 -YDSEQFEQFLVQEKSILVAPGKPFGEN-GNRYVRISLALDDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp -CCHHHHHHHHHHHHCEECEESGGGCGG-GTTEEEEECCSCTTHHHHHHHHHHGGGGG
T ss_pred -CCHHHHHHHHHHHCCEEEeCchhhCcC-CCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 124566666677789999999998752 45689999998889999999999887653
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=363.60 Aligned_cols=372 Identities=14% Similarity=0.204 Sum_probs=294.4
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH 91 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~ 91 (463)
++++..++++.++.+...+ .+.++|+|+.|+|++ |. |+.+.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~ 47 (410)
T 3e2y_A 2 AKRIEGLDSNVWVEFTKLA-----ADPSVVNLGQGFPDI------------------------SP-----PSYVKEELSK 47 (410)
T ss_dssp CGGGTTCCCCHHHHTTTTT-----TSTTSEECSSCCCCS------------------------CC-----CHHHHHHHHH
T ss_pred chhhccCCccHHHHHHHHh-----cCCCeEEecCCCCCC------------------------CC-----CHHHHHHHHH
Confidence 4577788888888776532 346799999999986 44 8899999988
Q ss_pred HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 92 YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 92 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
.+... ...+|++..|..++|+++++++++.+|+++++ ++|++|+|+++++..++.+++ ++||+|+++
T Consensus 48 ~~~~~--~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~ 124 (410)
T 3e2y_A 48 AAFID--NMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEP 124 (410)
T ss_dssp HHTCG--GGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHH
T ss_pred HHhCc--cccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHH
Confidence 88752 45689998899999999999999999999988 799999999999999999997 899999997
Q ss_pred ----cCcee---cC------------CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ----FHTTW---KR------------QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ----~g~~~---~~------------~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ +. .++.+|+ +.|++++++ ++++|++++||||||.+++.+++++|+++|+
T Consensus 125 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~-~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~ 197 (410)
T 3e2y_A 125 MVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDP-RELESKFSS------KTKAIILNTPHNPLGKVYTRQELQVIADLCV 197 (410)
T ss_dssp HHHHTTCEEEEEECEECCCCSSCCBGGGEECCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEEeccccccccccccccCCcCCH-HHHHhhcCC------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHH
Confidence 45544 11 3567899 999998876 7999999999999999999999999999999
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
+||+++|+||+|..+.++ +..+.++..+. ...+++|++.|+||++ |++|+|+||++ +++++++.+.+.
T Consensus 198 ~~~~~li~De~~~~~~~~-~~~~~~~~~~~-------~~~~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~ 265 (410)
T 3e2y_A 198 KHDTLCISDEVYEWLVYT-GHTHVKIATLP-------GMWERTITIGSAGKTF-SVTGWKLGWSI---GPAHLIKHLQTV 265 (410)
T ss_dssp HHTCEEEEECTTTTCBCT-TCCCCCGGGST-------TCGGGEEEEEEHHHHS-SCGGGCCEEEE---CCHHHHHHHHHH
T ss_pred HcCcEEEEEhhhhhcccC-CCCCCCHHHcC-------CccCeEEEEecchhhc-CCCCceEEEEE---ECHHHHHHHHHH
Confidence 999999999999998883 44444554331 2345789999999999 89999999999 699999999877
Q ss_pred hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC-C
Q 041151 303 AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL-P 380 (463)
Q Consensus 303 ~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~-~ 380 (463)
.. ..++++.+.|.++..+++... ..+.....+.+++++.++++++.+.+.|+++ |+.+..|++++|+|+++.. +
T Consensus 266 ~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 341 (410)
T 3e2y_A 266 QQNSFYTCATPLQAALAEAFWIDI---KRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLG 341 (410)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHHH---TTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGC
T ss_pred HHhhccCCChHHHHHHHHHHHhhh---ccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhh
Confidence 65 577889999999988874100 0000012334567888999999999999998 8998899999999977642 1
Q ss_pred hhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----CCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 381 PKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----GIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.+. +. ......++.+++..+++++||.+.||+.|+... +.+++|||++.+++++++++++|++
T Consensus 342 ~~~-~~-~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 342 ADL-SD-MNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAAEEIFRA 408 (410)
T ss_dssp CCC-TT-CCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHHHHHHHT
T ss_pred ccc-cc-ccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHHHHHHHh
Confidence 110 00 000001134677778889999999999997532 3569999999999999999999975
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-44 Score=356.58 Aligned_cols=337 Identities=13% Similarity=0.163 Sum_probs=279.9
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
+|+++|||+.|++.+ +. |+.+++++.+.+.. ....|++ .| .++|++
T Consensus 21 ~g~~~idl~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~-~~-~~lr~~ 66 (377)
T 3fdb_A 21 YGQGVLPLWVAESDF------------------------ST-----CPAVLQAITDAVQR---EAFGYQP-DG-SLLSQA 66 (377)
T ss_dssp SCTTSEECCSSCCCS------------------------CC-----CHHHHHHHHHHHHT---TCCSSCC-SS-CCHHHH
T ss_pred cCCCeeeecccCCCC------------------------CC-----CHHHHHHHHHHHHc---CCCCCCC-CC-HHHHHH
Confidence 578899999998775 44 88999999988876 3568988 77 899999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cCCCcccChHHHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KRQQIGVLIINDL 179 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~~~~~~d~~~~l 179 (463)
+++++++.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +.+.. +|+ +.|
T Consensus 67 la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~d~-~~l 143 (377)
T 3fdb_A 67 TAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT-PAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG-INL-HDV 143 (377)
T ss_dssp HHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS-CCH-HHH
T ss_pred HHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC-CCH-HHH
Confidence 999999999999999999999999999999999997 899999997 45555 33323 899 999
Q ss_pred HHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCC
Q 041151 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259 (463)
Q Consensus 180 ~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++.+++ ++++|++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++.....++..+
T Consensus 144 ~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-------- 209 (377)
T 3fdb_A 144 EKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSD-------- 209 (377)
T ss_dssp HHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCH--------
T ss_pred HHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHc--------
Confidence 999987 789999999999999999999999999999999999999999999888421334444332
Q ss_pred CCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 041151 260 SKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRES 338 (463)
Q Consensus 260 ~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 338 (463)
+..+++++++|+||++ |++|+|+||+++ +++++++.+.+... .+++++.+.|.++.++++. ..++.
T Consensus 210 ~~~~~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----------~~~~~ 276 (377)
T 3fdb_A 210 TAASVCITITAPSKAW-NIAGLKCAQIIF--SNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRY----------GTDFL 276 (377)
T ss_dssp HHHHHEEEEECSTTTT-TCGGGCCEEEEC--CSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHH----------CHHHH
T ss_pred cCCCcEEEEEeChHhc-cCcchhheEEEe--CCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhc----------cHHHH
Confidence 1234789999999999 899999999885 57889999988765 5678899999998888741 13445
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 339 KGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 339 ~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
+++++.++++++.+.+.|++ +||+.+..+++++++|++++... .+.+++..+++++||.+.||+.|+
T Consensus 277 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~gi~v~~g~~~~ 344 (377)
T 3fdb_A 277 NQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTT------------IEGSPSEFFIEKAKVAMNDGAWFG 344 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSC------------CCSCHHHHHHHHHCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccC------------CCHHHHHHHHHhCCEEecCChhcc
Confidence 67888999999999999998 78999999999999996654211 123456677777899999999998
Q ss_pred CCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 418 ~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
.. +.+++||+++.+++++++++++|++++++
T Consensus 345 ~~-~~~~~Ris~~~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 345 ED-GTGFCRLNFATSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp GG-GTTEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred CC-CCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 63 45699999998889999999999988754
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=360.74 Aligned_cols=368 Identities=18% Similarity=0.232 Sum_probs=285.0
Q ss_pred hhhhhhhhhccch-hhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHH
Q 041151 9 ESMNENVKKVQYA-VRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADA 85 (463)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 85 (463)
..+++++..++++ .+..+.......... ++++|||+.|+|+. +. |+.+
T Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~------------------------~~-----~~~v 87 (449)
T 3qgu_A 37 VQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTE------------------------PL-----PKYI 87 (449)
T ss_dssp CCCCHHHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCC------------------------CC-----CHHH
T ss_pred hhhhHHHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCCC------------------------CC-----CHHH
Confidence 3566777777764 455666666655543 77899999998885 44 8899
Q ss_pred HHHHHHHhhhcC--CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--
Q 041151 86 IARAKHYLSLTS--GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 86 ~~a~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-- 161 (463)
++++.+++.... .....|++..|..+||+++++++. +|+.+++++|++|+|+++++..+ ..++ ++||.|+++
T Consensus 88 ~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~-~~gd~Vl~~~p 163 (449)
T 3qgu_A 88 ADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMF-GSKPTVAVQDP 163 (449)
T ss_dssp HHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHH-CSSSCEEEEES
T ss_pred HHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHh-CCCCEEEEcCC
Confidence 999988877432 245689988999999999999997 78888999999999999999998 8887 899999997
Q ss_pred -----------cCce----------e---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 162 -----------FHTT----------W---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 162 -----------~g~~----------~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
.|.+ + + ..++..|+ +.+ + ++++|++++||||||.+++.+++
T Consensus 164 ~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~------~~~~v~l~~p~NPtG~~~~~~~l 231 (449)
T 3qgu_A 164 SYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL-SKA-----K------RTDIIFFCSPNNPTGAAATRAQL 231 (449)
T ss_dssp CCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG-GGC-----C------CCSEEEEESSCTTTCCCCCHHHH
T ss_pred CChhHHHHHHHcCCcccccccccceeEEEecccccCCcCCh-hHc-----C------CCCEEEEeCCCCCCCCcCCHHHH
Confidence 4544 3 2 22344454 332 2 78999999999999999999999
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|+++|+++|++||+||+|..+.++ +....++..+. ...+++|++.||||+| |++|+|+||++ ++++
T Consensus 232 ~~l~~l~~~~~~~li~Dea~~~~~~~-~~~~~~~~~~~-------~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~ 299 (449)
T 3qgu_A 232 TELVNFARKNGSILVYDAAYALYISN-PDCPKTIYEIP-------GADEVAIETCSFSKYA-GFTGVRLGWTV---VPKA 299 (449)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGCCC-TTSCSSGGGST-------TGGGTEEEEEECSGGG-TCTTCCCEEEE---CCTT
T ss_pred HHHHHHHHHCCcEEEEEcchHhhhcC-CCCCCCHhhcc-------CCCCcEEEEecchhhc-CCccceeEEEe---cCHH
Confidence 99999999999999999999998883 33344544331 1134689999999999 99999999999 5777
Q ss_pred HHH--------HHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 295 TVD--------EIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 295 ~~~--------~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
+++ .+.+... ...+++.+.|.++..++.. ....+.++++++++++++++.+.|+++ |+.+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 369 (449)
T 3qgu_A 300 LKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQP---------EGLKEMNAMIKFYKENAQILKTTFTEM-GFSVY 369 (449)
T ss_dssp CBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred HHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeee
Confidence 664 4444444 3457899999999998851 122456678999999999999999998 89988
Q ss_pred cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.+++++|+|++++ +. ++.+++..+++++||.+.||..|+. .+.+++||++..+++++++++++|++
T Consensus 370 ~~~~~~~~~~~~~---~~----------~~~~~~~~l~~~~gI~v~pg~~f~~-~~~~~iRis~~~~~e~i~~~l~~l~~ 435 (449)
T 3qgu_A 370 GGDDAPYIWVGFP---GK----------PSWDVFAEILERCNIVTTPGSGYGP-AGEGFVRASAFGSRENILEAVRRFKE 435 (449)
T ss_dssp ESSSSSEEEEECT---TS----------CHHHHHHHHHHHHCEECEEGGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CCCCeeEEEEECC---CC----------CHHHHHHHHHHHCCEEEecchHhCC-CCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 8999999997654 21 3566777778878999999999985 35679999998889999999999999
Q ss_pred HHHHHHHHhccc
Q 041151 446 FNDEFMEQYEDY 457 (463)
Q Consensus 446 ~l~~~~~~~~~~ 457 (463)
++++-..++..|
T Consensus 436 ~~~~~~~~~~~~ 447 (449)
T 3qgu_A 436 AYGKRNASHHHH 447 (449)
T ss_dssp HHC---------
T ss_pred HHHhcCcccccc
Confidence 998776664433
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=354.18 Aligned_cols=353 Identities=18% Similarity=0.238 Sum_probs=283.9
Q ss_pred hccc-hhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhh
Q 041151 17 KVQY-AVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSL 95 (463)
Q Consensus 17 ~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~ 95 (463)
+++. +.+..+.....+..++|+++|||+.|.|+. +. |+.+.+++.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~~~idl~~~~~~~------------------------~~-----~~~v~~a~~~~~~~ 53 (376)
T 2dou_A 3 RVPEPSVFLVVDEAKRKARERGVGLIDLSIGSTDL------------------------PP-----PEAPLKALAEALND 53 (376)
T ss_dssp -CCCTHHHHHHHHHHHHHHHTTCCCEECSSCCCCC------------------------CC-----CHHHHHHHHHHTTC
T ss_pred cCCccchHHHHHHHHHHhhccCCCEEeccCCCCCC------------------------CC-----CHHHHHHHHHHHhC
Confidence 3455 777777777777667788999999998874 32 78899998888764
Q ss_pred cCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------
Q 041151 96 TSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------- 161 (463)
Q Consensus 96 ~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------- 161 (463)
.....|++..|..++|+++++++.+.+|.+++++ +|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 --~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~ 130 (376)
T 2dou_A 54 --PTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT-EPEDLLLLPEVAYPSYFGAARV 130 (376)
T ss_dssp --GGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHH
T ss_pred --CCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc-CCCCEEEECCCCcHhHHHHHHH
Confidence 1356788767889999999999988889888887 99999999999999999997 899999997
Q ss_pred cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 162 FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 162 ~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.|.++ + .+++.+|+ +.|++.+++ ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+
T Consensus 131 ~g~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~ 203 (376)
T 2dou_A 131 ASLRTFLIPLREDGLADL-KAVPEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQ 203 (376)
T ss_dssp TTCEEEEECBCTTSSBCG-GGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred cCCEEEEeeCCCCCCCCH-HHHHHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence 56655 3 34566899 999999976 7999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIF 316 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~ 316 (463)
.++ + ...++..+. +..+++++++|+||++ |++|+|+||++ +++++++.+..... ...+++.+.|.+
T Consensus 204 ~~~-~-~~~~~~~~~-------~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~a 270 (376)
T 2dou_A 204 VYE-G-EAPSPLALP-------GAKERVVELFSLSKSY-NLAGFRLGFAL---GSEEALARLERVKGVIDFNQYAGVLRM 270 (376)
T ss_dssp BSS-S-CCCCGGGST-------TGGGTEEEEEEHHHHH-TCGGGCCEEEE---ECHHHHHHHHHHHHHHCCCSCHHHHHH
T ss_pred ccC-C-CCCChhhcC-------CCCCcEEEEecchhhc-CChhheeEEEe---cCHHHHHHHHHHHHhcccCCCHHHHHH
Confidence 873 2 222332221 2234689999999999 88999999998 58999999987765 556789999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChH
Q 041151 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (463)
+..+|+.. ..+.++.++.++++++.+.+.|+++ +.+..+++++|+|++++ .+. +..
T Consensus 271 ~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~--~~~----------~~~ 326 (376)
T 2dou_A 271 GVEALKTP----------KEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLP--EGV----------DDL 326 (376)
T ss_dssp HHHHHTSC----------HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECC--TTC----------CHH
T ss_pred HHHHHhCc----------HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECC--CCC----------CHH
Confidence 99988631 2345567888999999999999886 77777889999996553 221 234
Q ss_pred HHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 397 FYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 397 ~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
++...++ ++||.+.||..|+.. +.+++||+++.+++++++++++|++++
T Consensus 327 ~~~~~l~-~~gi~v~~g~~f~~~-~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 327 EFGLRLV-ERGVALAPGRGFGPG-GKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp HHHHHHH-HTTEECEEGGGGCGG-GTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HCCEEEcCchhhCCC-CCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 5555544 559999999988752 456899999988899999999998764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=358.90 Aligned_cols=363 Identities=13% Similarity=0.104 Sum_probs=282.7
Q ss_pred hhhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCC---CCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHH
Q 041151 8 YESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVG---NPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPAD 84 (463)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 84 (463)
..++++++..+++++++.+...+.+.. .+++|||+.| +|+. +.|. ++.
T Consensus 21 ~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~i~l~~G~y~d~~~----------------------~~~~-----~~~ 71 (420)
T 4f4e_A 21 SMSLFSAVELAPRDPILGLNEAFNADT--RPTKVNLGVGVYTNEDG----------------------KIPL-----LRA 71 (420)
T ss_dssp -CCTTTTCCCCCCCHHHHHHHHHHHCC--CSSCEECCCCSCCCTTS----------------------CCCC-----CHH
T ss_pred ccCHhhcCCcCCCChHHHHHHHHHhcC--CCCcEEeeeeeeECCCC----------------------CccC-----cHH
Confidence 456899999999999998877665432 3579999999 5664 2232 589
Q ss_pred HHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHH--HHHHhcCCCCEEEE
Q 041151 85 AIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQT--LNCVIRGEGDGVVL 160 (463)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~--~~~l~~~~gd~Vlv 160 (463)
+.+++.+++.. ....+|++..|.+++|+++++++...++..++++ +|++|+|+++++..+ +.+++ ++||+|++
T Consensus 72 v~~a~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~-~~gd~Vlv 148 (420)
T 4f4e_A 72 VRDAEKARVEA--GLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTL-NPKAKVAI 148 (420)
T ss_dssp HHHHHHHHHHT--CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEE
T ss_pred HHHHHHHHhcc--CCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHh-CCCCEEEE
Confidence 99999888876 2457899999999999999999976555445788 999999999999999 45666 89999999
Q ss_pred c-------------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L-------------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p-------------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|+++ + .+++++|+ +.|++.++.. .+++++|++++||||||.+++.+++++|+++|
T Consensus 149 ~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~ 224 (420)
T 4f4e_A 149 SDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNF-DGMLAALNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVV 224 (420)
T ss_dssp EESCCHHHHHHHHHTTCCEEEEECEETTTTEECH-HHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHH
T ss_pred eCCCcHhHHHHHHHcCCeEEEeeeeccccCccCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Confidence 7 56665 2 34788999 9999999731 11688999999999999999999999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH--
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI-- 299 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l-- 299 (463)
+++|++||+||+|..+.++.+....++..+. + ..+++|+++||||+| |++|+|+||+++..+++++++.+
T Consensus 225 ~~~~~~li~De~y~~~~~~~~~~~~~~~~~~-~------~~~~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~ 296 (420)
T 4f4e_A 225 KARRLVPFLDIAYQGFGESIEADAAAVRLFA-A------ANLNVFVSSSFSKSF-SLYGERVGALSIITDSKDEAARVLS 296 (420)
T ss_dssp HHHTCEEEEEESCTTSSSCTTGGGHHHHHHH-H------TTCCEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHH
T ss_pred HHCCcEEEEccccccccCCcchhhHHHHHHH-h------cCCCEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHHHHHHH
Confidence 9999999999999999884222334444432 2 234789999999999 99999999986432456665543
Q ss_pred --Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCceeE
Q 041151 300 --YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE-QFVRESKGILESLRRRARMMTDGFNSC---RNVVCNFTEGAMY 372 (463)
Q Consensus 300 --~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~ 372 (463)
..... ...+++.+.|.++..++.. ..+. .+.++.++++++|+++++.+.+.|+++ +|+.+..|++++|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~ 371 (420)
T 4f4e_A 297 QLKRVIRTNYSNPPTHGGAIVAAVLAS-----PELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMF 371 (420)
T ss_dssp HHHHHHHTTTSSCCSHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSE
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEE
Confidence 22222 3456788999999888752 2221 234557788999999999999999986 4788888999999
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
+|+.++ .+.+..+++++||.+.|+ .|||++ .+++++++++++|++++
T Consensus 372 ~~~~~~-----------------~~~~~~~l~~~gI~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 372 SYSGLT-----------------SAQVDRLREEFGIYAVST-----------GRICVAALNTRNLDVVANAIAAVL 419 (420)
T ss_dssp EECCCC-----------------HHHHHHHHHHHCEECCTT-----------SEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred EEeCCC-----------------HHHHHHHHHhCCEEecCC-----------CeEEEecCCHHHHHHHHHHHHHHh
Confidence 995442 234667788999999984 299999 58899999999999876
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=355.82 Aligned_cols=363 Identities=19% Similarity=0.289 Sum_probs=290.3
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..++++.++.+.... ...++|||+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 48 (411)
T 2o0r_A 3 TVSRLRPYATTVFAEMSALA-----TRIGAVNLGQGFPDE------------------------DG-----PPKMLQAAQ 48 (411)
T ss_dssp CCGGGGGGSSCHHHHHHHHH-----HTTTCEESSCSSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhHhHhcCccHHHHHHHHh-----hcCCeeeccCcCCCC------------------------CC-----CHHHHHHHH
Confidence 67888888888777655432 234589999998874 33 788999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.. ....|++..|..++|+++++++.+.+|++++++ +|++|+|+++++..++.+++ ++||+|+++
T Consensus 49 ~~~~~---~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~-~~gd~Vl~~~~~y~~~~ 124 (411)
T 2o0r_A 49 DAIAG---GVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV-EPGSEVLLIEPFYDSYS 124 (411)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHH
T ss_pred HHHhc---CCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHH
Confidence 88875 256899888999999999999998889888898 99999999999999999997 899999997
Q ss_pred -----cCcee---cC----CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 -----FHTTW---KR----QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 -----~g~~~---~~----~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +. .++.+|+ +.|++++++ ++++|++++|+||||.+++.+++++|+++|+++|++||
T Consensus 125 ~~~~~~g~~~~~v~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li 197 (411)
T 2o0r_A 125 PVVAMAGAHRVTVPLVPDGRGFALDA-DALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVI 197 (411)
T ss_dssp HHHHHTTCEEEEEECEEETTEEECCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCEEEEeeccccccCCCCCH-HHHHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 45555 21 2467999 999999876 79999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
+||+|..+.++ +..+.++..+. ...++++++.|+||.+ |++|+|+||++ +++++++.+..... ..++
T Consensus 198 ~De~~~~~~~~-g~~~~~~~~~~-------~~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~ 265 (411)
T 2o0r_A 198 TDEVYEHLVFD-HARHLPLAGFD-------GMAERTITISSAAKMF-NCTGWKIGWAC---GPAELIAGVRAAKQYLSYV 265 (411)
T ss_dssp EECTTTTCBCT-TCCCCCGGGST-------TTGGGEEEEEEHHHHT-TCTTTCEEEEE---CCHHHHHHHHHHHHHHTSC
T ss_pred EEccccccccC-CCCCcChhhcc-------CCCCCEEEEeechhhc-CCccceEEEEe---eCHHHHHHHHHHHhhccCC
Confidence 99999998873 33334443320 1135789999999999 89999999999 58999998887664 4677
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
++.+.|.++..+|+. ...+.+++++.++++++++.+.|++. |+.+..+++++|+|++++ ..
T Consensus 266 ~~~~~~~a~~~~l~~----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~------ 326 (411)
T 2o0r_A 266 GGAPFQPAVALALDT----------EDAWVAALRNSLRARRDRLAAGLTEI-GFAVHDSYGTYFLCADPR--PL------ 326 (411)
T ss_dssp CCTTHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCBSSEEEEECG--GG------
T ss_pred CChHHHHHHHHHHhC----------ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEecCCCeeEEEEEecC--CC------
Confidence 788899888888741 12345567888999999999999988 888888899999996654 20
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------CCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------GIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+..+..+++..+++++||.+.||..|.... +.+++||+++.+++++++++++|++++++.+
T Consensus 327 --~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~~~~~~ 397 (411)
T 2o0r_A 327 --GYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIRRLSVLAERPA 397 (411)
T ss_dssp --TCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHHHHGGGGC---
T ss_pred --CCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhccC
Confidence 001245666667778899999999884322 3568999999888999999999998876653
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=355.03 Aligned_cols=371 Identities=16% Similarity=0.125 Sum_probs=282.5
Q ss_pred hhhhhccchhhhhHHHHHHHHHHh--cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKE--GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
.+.....++.+..+...+.+..+. |.++|+|+.|+|.... . +.+. |+.+.+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~-----------------~--~~~~-----~~~v~~a~~ 66 (418)
T 3rq1_A 11 HAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEE-----------------G--NLVF-----LKTVKEEYL 66 (418)
T ss_dssp TTTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTT-----------------S--CBCC-----CHHHHHHHH
T ss_pred hcCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCC-----------------C--Cccc-----cHHHHHHHH
Confidence 344456677788888888888776 6789999999883100 0 1132 777777765
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.... ....|++..|.++||+++++++...++.. .+++|++|+|+++++..++.+++ +|||+|+++
T Consensus 67 ~~~~~---~~~~y~~~~g~~~lr~~ia~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~ 141 (418)
T 3rq1_A 67 SLSDS---EHVGYAPIAGIPDFLCAAEKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYT-EPGDEVLTADWYWGAYRV 141 (418)
T ss_dssp TCCHH---HHHSCCCTTCCHHHHHHHHHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHS-CTTCEEEEESSCCTHHHH
T ss_pred Hhccc---ccCCCCCCCChHHHHHHHHHHHhcccCcc-ccccEEECCchHHHHHHHHHHhc-CCCCEEEECCCCchhHHH
Confidence 54332 34689999999999999999997665432 23399999999999999999998 999999997
Q ss_pred ----cCcee---c--CCCcccChHHHHHHHHHHHHhcCCcee-EEEEECC-CCCCccCCCHHHHHHHHHHhh------hC
Q 041151 162 ----FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVR-AMVIINP-GNPTGQCLSEANLREILRFCY------QE 224 (463)
Q Consensus 162 ----~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~-~i~l~~p-~NPtG~~~s~~~l~~l~~~a~------~~ 224 (463)
.|.++ + ..++++|+ +.|++.+++.... +++ +|++++| |||||.+++.+++++|+++|+ +|
T Consensus 142 ~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~~~~~--~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~ 218 (418)
T 3rq1_A 142 ICSDTGRTLVTYSLFDEHNNFNH-EAFQNRVNELAAK--QTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN 218 (418)
T ss_dssp HHHHTTCEEEEECSBCTTSSBCH-HHHHHHHHHHHHH--CSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHcCCEEEEEeeeCCCCCcCH-HHHHHHHHHhhcc--CCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC
Confidence 56665 2 34578999 9999999852111 345 7888899 999999999999999999999 89
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
|++||+||+|.++.+ .+....++....+++ .++..+|+++||||++ |++|+|+||++....++++++.+.+...
T Consensus 219 ~~~li~De~y~~~~~-~~~~~~~~~~~~~~~----~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 292 (418)
T 3rq1_A 219 NVIIGIDVAYLDYSG-EKDEVRAFFNKFSHL----PKEILTCVCYSLSKGF-TMYGQRVGAMIGISDDEEIADEFFEVNK 292 (418)
T ss_dssp EEEEEEECTTGGGSS-CHHHHHGGGGGGTTC----CTTEEEEEEEESTTTT-TCCSSCCEEEEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEecccccccC-ChHHHHHHHHHHHhc----CCCceEEEEEeCCCCC-cCcCCcceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999998876 222222333322222 3333368999999999 9999999999821118899998877653
Q ss_pred -h----cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 305 -I----ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 305 -~----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
. ..+++.+.|.++..++++. ..++.+.++.+++++.++++++.+.+.|+++ |+.+..++++||+|+++.
T Consensus 293 ~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~- 366 (418)
T 3rq1_A 293 STSRATWSNICRPAMRTMANIVADP----AKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPYRGGFFITIPTD- 366 (418)
T ss_dssp HHHHHHTSSCCHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCSSSEEEEECT-
T ss_pred HHHhhccCCCchHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCceEEEEcCCC-
Confidence 1 2458899999999988631 2233456666678899999999999999988 899999999999996543
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..+++ +.|.++||.+.||. +++|||++ .+++++++++++|+++++++
T Consensus 367 --------------~~~~~~-~~l~~~gi~v~~g~--------~~iRis~~~~~~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 367 --------------SANAIC-EELKKEHIYVIALA--------NGIRIAACGIPKCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp --------------THHHHH-HHHHHTTEECEECS--------SEEEEEGGGSCHHHHTTHHHHHHHHHHHT
T ss_pred --------------CHHHHH-HHHHhCCEEEecCC--------CCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 134444 56788999999962 37999998 69999999999999998764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=352.79 Aligned_cols=351 Identities=16% Similarity=0.189 Sum_probs=281.4
Q ss_pred hccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhc
Q 041151 17 KVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLT 96 (463)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~ 96 (463)
++++++++.+...++++..+| ++|||+.|+|+. +. |+.+.+++.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~-- 50 (376)
T 3ezs_A 3 TFEPYPFERLRALLKEITPKK-RGLDLGIGEPQF------------------------ET-----PKFIQDALKNHTH-- 50 (376)
T ss_dssp CCCCCHHHHHHHHHTTCCCSS-CCCBCSSCCCCS------------------------CC-----CHHHHHHHHTTGG--
T ss_pred CCCcchHHHHHHHHHhhhccC-CEEEeCCCCCCC------------------------CC-----CHHHHHHHHHhhh--
Confidence 356778888887777766677 899999999885 33 8889988887763
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC--CCEEEEc-------------
Q 041151 97 SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE--GDGVVLL------------- 161 (463)
Q Consensus 97 ~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~--gd~Vlvp------------- 161 (463)
....|++..|..++|+++++++.+.+|+++++++|++|+|+++++..++.+++ ++ ||+|+++
T Consensus 51 --~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~-~~~~gd~vl~~~p~~~~~~~~~~~ 127 (376)
T 3ezs_A 51 --SLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL-FDYQNPTIAYPNPFYQIYEGAAKF 127 (376)
T ss_dssp --GGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT-TTCSSCEEEEEESCCTHHHHHHHH
T ss_pred --hcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc-CCCCCCEEEEecCCcHhHHHHHHH
Confidence 35789998999999999999999888988899999999999999999999997 89 9999997
Q ss_pred cCcee---cCC-CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 162 FHTTW---KRQ-QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 162 ~g~~~---~~~-~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.|.++ +.+ ..++++ .+++.+.+ ++++|++++||||||.+++.+++++|+++|++||++||+||+|..+
T Consensus 128 ~g~~~~~~~~~~~~~~~~--~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~ 199 (376)
T 3ezs_A 128 IKAKSLLMPLTKENDFTP--SLNEKELQ------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEI 199 (376)
T ss_dssp TTCEEEEEECCGGGTSCC--CCCHHHHH------HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTC
T ss_pred cCCEEEEcccCCCCCcch--hHHhhhcc------CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhh
Confidence 55555 222 123332 45556665 7899999999999999999999999999999999999999999998
Q ss_pred ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIF 316 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~ 316 (463)
.++ + ...++......++. +..+++++++|+||++ |++|+|+||++ +++++++.+.+... .+++++.+.|.+
T Consensus 200 ~~~-~-~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a 271 (376)
T 3ezs_A 200 YEN-T-PPPSLLEACMLAGN--EAFKNVLVIHSLSKRS-SAPGLRSGFIA---GDSRLLEKYKAFRAYLGYTSANAIQKA 271 (376)
T ss_dssp BSS-S-CCCCHHHHHHHTTC--TTCTTEEEEEESTTTT-TCGGGCCEEEE---ECHHHHHHHHHHHTTTCCCCCHHHHHH
T ss_pred ccC-C-CCCCHHHccccccc--cccCcEEEEecchhcc-CCccceeEEEe---eCHHHHHHHHHHHhhhcCCCChHHHHH
Confidence 883 3 34455443221100 1345789999999999 89999999999 59999999988765 567889999999
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChH
Q 041151 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (463)
+..+++. ..+.++.++.++++++.+.+.|+ ++. .|.+++|+|++++ . ..
T Consensus 272 ~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~~~~~~~~~~~--~-------------~~ 320 (376)
T 3ezs_A 272 SEAAWLD-----------DRHAEFFRNIYANNLKLARKIFK---NTL--IYPYSFYVYLPVQ--N-------------GE 320 (376)
T ss_dssp HHHHHHC-----------SHHHHHHHHHHHHHHHHHHHHST---TCC--CCSBSSEEEEECS--C-------------HH
T ss_pred HHHHHhC-----------cHHHHHHHHHHHHHHHHHHHHhc---CCC--CCCcceEEEEECC--C-------------HH
Confidence 9988853 12345678889999999999997 444 6788999996654 1 45
Q ss_pred HHHHHHHHhcCeEeeCCCCCCC-CCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 397 FYCLRLLEATGISTVPGSGFGQ-KEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 397 ~~~~~ll~~~gI~v~pg~~f~~-~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+++..+++++||.+.||+.|+. ..+.+++||+++.+++++++++++|++++++
T Consensus 321 ~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 321 NFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 5666666658999999999984 2355799999998889999999999988754
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=356.58 Aligned_cols=375 Identities=16% Similarity=0.185 Sum_probs=291.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++.+++++.++.+...+ .++++|||+.|.|+..+ . .++.+.+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~idl~~g~~~~~~----------------------~-----~~~~v~~a~ 67 (425)
T 1vp4_A 20 KISKIGQNMKSSIIREILKFA-----ADKDAISFGGGVPDPET----------------------F-----PRKELAEIA 67 (425)
T ss_dssp HCCHHHHTCCCCCHHHHTTTT-----TSTTCEECCCCSCCGGG----------------------S-----CHHHHHHHH
T ss_pred hhhhhhhcCCCcHHHHHHHhc-----cCCCceeCCCCCCCccc----------------------C-----CHHHHHHHH
Confidence 467778788888777665432 25679999999887411 1 166788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+.........|++..|..++|+++++++.+++|++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 68 ~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~ 146 (425)
T 1vp4_A 68 KEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGA 146 (425)
T ss_dssp HHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCHHH
T ss_pred HHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHH
Confidence 87776521124689888899999999999998777887 888999999999999999999997 899999997
Q ss_pred ------cCcee---cCCCcccChHHHHHHHHHHHHhc--CCceeEEE-EECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW---KRQQIGVLIINDLQQSVAQARSK--GITVRAMV-IINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~--~~~~~~i~-l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +.+..++|+ +.|++.+++.... +.++++|+ +++||||||.+++.+++++|+++|+++|++||
T Consensus 147 ~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li 225 (425)
T 1vp4_A 147 INAFRQYLANFVVVPLEDDGMDL-NVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIV 225 (425)
T ss_dssp HHHHHTTTCEEEEEEEETTEECH-HHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHcCCEEEEeccCCCCCCH-HHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 56655 222235899 9999998762110 11689985 67999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
+||+|..+.++ +....++..+ +..+++|+++||||++ + +|+|+||++ +++++++.+..... .+++
T Consensus 226 ~De~~~~~~~~-g~~~~~~~~~--------~~~~~~i~~~s~sK~~-~-~G~r~G~~~---~~~~~~~~l~~~~~~~~~~ 291 (425)
T 1vp4_A 226 EDDPYGALRYE-GETVDPIFKI--------GGPERVVLLNTFSKVL-A-PGLRIGMVA---GSKEFIRKIVQAKQSADLC 291 (425)
T ss_dssp EECSSTTCBCS-SCCCCCHHHH--------HCTTTEEEEEESTTTT-C-GGGCEEEEE---CCHHHHHHHHHHHHHHHSS
T ss_pred EECCCccccCC-CCCCcCHHHh--------CCCCCEEEEecccccc-c-cccceEEEe---eCHHHHHHHHHHhhhhcCC
Confidence 99999998873 3444566554 2234689999999999 8 999999999 58999999887764 4567
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC---CcccccCCceeEEeeeccCChhhH
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CR---NVVCNFTEGAMYSFPQIRLPPKAI 384 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~p---g~~~~~~~g~~~~~~~~~~~~~~~ 384 (463)
++.+.|.++..+|+.. . +.++.+++++.++++++.+.+.|++ .| |+.+..|.+++|+|++++ .+.
T Consensus 292 ~~~~~~~a~~~~l~~~-----~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~--~~~- 360 (425)
T 1vp4_A 292 SPAITHRLAARYLERY-----D---LLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP--EGF- 360 (425)
T ss_dssp CCHHHHHHHHHHHHHS-----C---HHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC--TTC-
T ss_pred CCHHHHHHHHHHHhcC-----C---HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcC--CCC-
Confidence 8999999999887521 1 2344566788899999999999987 45 688888889999996653 211
Q ss_pred HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 385 EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 385 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+..+++..++ ++||.+.||..|+.. .+.+++||+++ .+++++++++++|+++++++.++
T Consensus 361 ---------~~~~l~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 361 ---------DTWEMFEYAK-RKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKE 421 (425)
T ss_dssp ---------CTTTTHHHHH-HHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHH-HCCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 2334455544 559999999988652 23568999999 57899999999999999887665
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=351.11 Aligned_cols=357 Identities=19% Similarity=0.295 Sum_probs=286.5
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..++++.+..+..... ..++|+|+.|.|+. +. |+.+.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 53 (386)
T 1u08_A 8 PQSKLPQLGTTIFTQMSALAQ-----QHQAINLSQGFPDF------------------------DG-----PRYLQERLA 53 (386)
T ss_dssp CCCSCCCCCCCHHHHHHHHHH-----HTTCEECCCSSCSS------------------------CC-----CHHHHHHHH
T ss_pred cchhhhcCCccHHHHHHHHHh-----cCCeEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 477888888887766544332 24689999998874 32 788999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.. ....|++..|..++|+++++++.+.+|.+++++ +|++|+|+++++..++.+++ ++||.|+++
T Consensus 54 ~~~~~---~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~ 129 (386)
T 1u08_A 54 HHVAQ---GANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDSYA 129 (386)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHH
T ss_pred HHHHh---hccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC-CCCCEEEEeCCCchhHH
Confidence 88765 346898888999999999999988889888899 99999999999999999997 899999997
Q ss_pred -----cCcee---cC--CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 -----FHTTW---KR--QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 -----~g~~~---~~--~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|.++ +. .++.+|+ +.|++.+++ ++++|++++||||||.+++.+++++|+++|+++|++||+|
T Consensus 130 ~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D 202 (386)
T 1u08_A 130 PAIALSGGIVKRMALQPPHFRVDW-QEFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISD 202 (386)
T ss_dssp HHHHHTTCEEEEEECCTTTCCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEE
T ss_pred HHHHHcCCEEEEeecCcccCcCCH-HHHHHhhcc------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEE
Confidence 45555 22 2578999 999999875 7999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|..+.|+ +....++..+.. ..+++++++|+||++ |++|+|+||++ +++++++.+..... ..++++
T Consensus 203 e~~~~~~~~-g~~~~~~~~~~~-------~~~~~i~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~ 270 (386)
T 1u08_A 203 EVYEHINFS-QQGHASVLAHPQ-------LRERAVAVSSFGKTY-HMTGWKVGYCV---APAPISAEIRKVHQYLTFSVN 270 (386)
T ss_dssp CTTTTCBCC-SSCCCCGGGSHH-------HHTTEEEEEEHHHHT-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTSSCC
T ss_pred ccccccccC-CCCCcChhcccC-------ccCcEEEEecchhhc-CCcccceEEEE---cCHHHHHHHHHHHHhhccCCC
Confidence 999998873 333334433210 123689999999999 89999999999 58999999887764 467888
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..+|+.. ..+.++++++++++++.+.+.|++. |+.+..+++++|+|++++ ..
T Consensus 271 ~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~-------- 329 (386)
T 1u08_A 271 TPAQLALADMLRAE----------PEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYS--AV-------- 329 (386)
T ss_dssp HHHHHHHHHHHHHC----------THHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECT--TT--------
T ss_pred hHHHHHHHHHHhCC----------cHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCceEEEEEecC--CC--------
Confidence 99999888887421 2335567889999999999999998 888888899999996654 11
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
+..+..+++..+++++||.+.||..|+.. .+.+++||+++.+++++++++++|++
T Consensus 330 ~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 330 STLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp CCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 00124566666677889999999988642 24568999999888999999999864
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=350.76 Aligned_cols=341 Identities=16% Similarity=0.250 Sum_probs=279.7
Q ss_pred cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHH
Q 041151 39 KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE 118 (463)
Q Consensus 39 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 118 (463)
++|||+.|+|.. .+. |+.+++++.+.+... ....|++..|..++++++++
T Consensus 40 ~~id~~~g~~~~-----------------------~~~-----~~~v~~a~~~~~~~~--~~~~y~~~~g~~~l~~~l~~ 89 (407)
T 3nra_A 40 RPVDFSHGDVDA-----------------------HEP-----TPGAFDLFSAGVQSG--GVQAYTEYRGDLGIRDLLAP 89 (407)
T ss_dssp CCEETTSCCTTT-----------------------SCC-----CTTHHHHHHHHHHHT--HHHHSCCTTCCHHHHHHHHH
T ss_pred ceeeecCcCCCC-----------------------CCC-----cHHHHHHHHHHHhcC--CCCCcCCCCCCHHHHHHHHH
Confidence 389999998872 133 788999998888752 34579888899999999999
Q ss_pred HHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c-------CCCcccC
Q 041151 119 FIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K-------RQQIGVL 174 (463)
Q Consensus 119 ~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~-------~~~~~~d 174 (463)
++.+.+|.++++ ++|++|+|+++++..++.+++ ++||+|+++ .|.++ + .+.+.+|
T Consensus 90 ~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d 168 (407)
T 3nra_A 90 RLAAFTGAPVDARDGLIITPGTQGALFLAVAATV-ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLD 168 (407)
T ss_dssp HHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBC
T ss_pred HHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhC-CCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcC
Confidence 999989988877 699999999999999999997 899999997 55555 2 3778899
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHh
Q 041151 175 IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMD 254 (463)
Q Consensus 175 ~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 254 (463)
+ +.|++.+++ ++++|++++||||||.+++.+++++|+++|++||+++|+||+|..+.++ +....++..+.+
T Consensus 169 ~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~-g~~~~~~~~~~~- 239 (407)
T 3nra_A 169 L-TGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYA-GASYTHLRAEAA- 239 (407)
T ss_dssp H-HHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCT-TCCCCCGGGCTT-
T ss_pred H-HHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCCChhhcCc-
Confidence 9 999999987 7999999999999999999999999999999999999999999998883 444445443210
Q ss_pred cCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHH
Q 041151 255 MGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 255 ~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
...+++++++||||++ |++|+|+||++ +++++++.+..... ...+++.+.|.++..+++...
T Consensus 240 -----~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~-------- 302 (407)
T 3nra_A 240 -----VDAENVVTIMGPSKTE-SLSGYRLGVAF---GSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP-------- 302 (407)
T ss_dssp -----SCGGGEEEEECSSSTT-CCGGGCCEEEE---ECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT--------
T ss_pred -----ccCCcEEEEeCccccc-CCCeeeEEEEE---cCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccc--------
Confidence 1245789999999999 89999999999 58999999988765 567778889988888876321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg 413 (463)
.+.++.+++++++++.+.+.|+++||+.+..+++++|+|+++... + .+..+++..+++++||.+.||
T Consensus 303 --~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~l~~~~gi~v~~g 369 (407)
T 3nra_A 303 --GWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL-A----------VAPAEFVKILRLQAGVVVTPG 369 (407)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCB-S----------SCHHHHHHHHHHHHCEECEEG
T ss_pred --hHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCC-C----------CCHHHHHHHHHHhCCEEEeCc
Confidence 123345677888999999999998899998899999999655421 1 124556666667789999999
Q ss_pred CCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 414 SGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 414 ~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+.|+. .+.+++||+++.+++++++++++|+++++++
T Consensus 370 ~~~~~-~~~~~iRis~~~~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 370 TEFSP-HTADSVRLNFSQDHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp GGTCT-TCTTBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhCC-CCCCEEEEEeCCCHHHHHHHHHHHHHHHHHh
Confidence 99985 3567899999988999999999999998765
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=351.74 Aligned_cols=362 Identities=20% Similarity=0.290 Sum_probs=294.6
Q ss_pred hhhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 8 YESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
+..+++++.+++++.++.+...+.+.+.+|+++|+|+.|.|+. +. |+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~ 63 (409)
T 2gb3_A 13 MDVFSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDL------------------------KT-----PEVFFE 63 (409)
T ss_dssp ---CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCS------------------------CC-----CTHHHH
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCCCC------------------------CC-----CHHHHH
Confidence 4678999999999999999999988888889999999999874 32 678888
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------ 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------ 161 (463)
++ +.+.. ....|++..|..++|+++++++...+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 64 a~-~~l~~---~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~Vl~~~~~~~~ 138 (409)
T 2gb3_A 64 RI-YENKP---EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVLEPFYAN 138 (409)
T ss_dssp HH-HHTCC---SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTH
T ss_pred HH-HHHhc---CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC-CCCCEEEEcCCCchh
Confidence 88 77754 34679888899999999999999888988899999999999999999999997 899999997
Q ss_pred -------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEE
Q 041151 162 -------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVL 228 (463)
Q Consensus 162 -------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~v 228 (463)
.|.++ +. +++.+ + +.|++++++ ++++|++++|+||||.+++.+++++|+++|+++|++|
T Consensus 139 ~~~~~~~~g~~~~~v~~~~~~~~~~-~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~l 210 (409)
T 2gb3_A 139 YNAFAKIAGVKLIPVTRRMEEGFAI-P-QNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFL 210 (409)
T ss_dssp HHHHHHHHTCEEEEEECCGGGTSCC-C-TTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCEEEEeccCCCCCCcc-H-HHHHHhhCc------CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEE
Confidence 45555 22 23444 7 889888876 7999999999999999999999999999999999999
Q ss_pred EecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh-hHHHHHHhhhh-hc
Q 041151 229 LGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-KTVDEIYKIAS-IA 306 (463)
Q Consensus 229 i~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~l~~~~~-~~ 306 (463)
|+||+|..+.++ + ...++ + +++ .+++++++|+||++ |++|+|+||+++ ++ ++++.+..... ..
T Consensus 211 i~Dea~~~~~~~-~-~~~~~--~-~~~------~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~l~~~l~~~~~~~~ 275 (409)
T 2gb3_A 211 IVDEVYSEIVFR-G-EFASA--L-SIE------SDKVVVIDSVSKKF-SACGARVGCLIT---RNEELISHAMKLAQGRL 275 (409)
T ss_dssp EEECTTTTCBCS-S-CCCCG--G-GSC------CTTEEEEEESTTTT-TCGGGCCEEEEC---SCHHHHHHHHHHHHHSC
T ss_pred EEECcccccccC-C-CCCCc--c-ccC------CCCEEEEecchhcc-CCccceEEEEEE---CcHHHHHHHHHHHhccC
Confidence 999999998773 2 22332 1 111 23589999999999 899999999994 66 89998887765 33
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHH
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIE 385 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~ 385 (463)
+++.+.|.++.++|+.. ..+.+++++.++++++++.+.|+++ |+.+ ..|++++++|++++ +
T Consensus 276 -~~~~~~~~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~---~--- 337 (409)
T 2gb3_A 276 -APPLLEQIGSVGLLNLD----------DSFFDFVRETYRERVETVLKKLEEH-GLKRFTKPSGAFYITAELP---V--- 337 (409)
T ss_dssp -CCCHHHHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCCCSBSSEEEEECS---S---
T ss_pred -CCCHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeCCCeeEEEEEEeC---C---
Confidence 88999999999888521 2335567888999999999999988 8888 78889999996654 1
Q ss_pred HHhhcCCCChHHHHHHHHHh-----cCeEeeCCCCCCCC--CCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 386 AAKRAGKVPDVFYCLRLLEA-----TGISTVPGSGFGQK--EGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 386 ~~~~~~~~~~~~~~~~ll~~-----~gI~v~pg~~f~~~--~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+..++...++++ +||.+.||..|+.. .+.+++||+++.+++++++++++|++++++++
T Consensus 338 -------~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~~~~ 403 (409)
T 2gb3_A 338 -------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC 403 (409)
T ss_dssp -------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 1245555555555 59999999988752 23569999999888999999999999988764
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-43 Score=356.78 Aligned_cols=376 Identities=15% Similarity=0.204 Sum_probs=290.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++....++.+..+..... ..++|||+.|.|+. +. |+.+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~ 59 (429)
T 1yiz_A 14 DLPKRYQGSTKSVWVEYIQLAA-----QYKPLNLGQGFPDY------------------------HA-----PKYALNAL 59 (429)
T ss_dssp CSSSSCCCCTTCHHHHHHHHHH-----HHCCEECCSSSCSS------------------------CC-----CHHHHHHH
T ss_pred chhHHhhhCCchHHHHHHHHhc-----cCCEEEecCCCCCC------------------------CC-----CHHHHHHH
Confidence 4567777777776665543321 24689999998874 32 78899999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+.+.........|++..|..++|+++++++.+.+|.+++++ +|++|+|+++++..++.+++ ++||+|+++
T Consensus 60 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~Vl~~~p~y~~~ 138 (429)
T 1yiz_A 60 AAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-DEGDEVIIIEPFFDCY 138 (429)
T ss_dssp HHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTH
T ss_pred HHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCchhH
Confidence 888765211346898888999999999999988889888899 99999999999999999997 899999997
Q ss_pred ------cCcee---c--CC---------CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 162 ------FHTTW---K--RQ---------QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 162 ------~g~~~---~--~~---------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
.|.++ + .. ++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|
T Consensus 139 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~ 211 (429)
T 1yiz_A 139 EPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDN-NELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLC 211 (429)
T ss_dssp HHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEeCCcccccccccccCcccCH-HHHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHH
Confidence 45555 2 22 467999 999999875 799999999999999999999999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
++||++||+||+|..+.++ +....++..+ + ...++++++.|+||.+ |++|+|+||++ +++++++.+..
T Consensus 212 ~~~~~~li~De~~~~~~~~-g~~~~~~~~~-~------~~~~~~~~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~l~~ 279 (429)
T 1yiz_A 212 KKWNVLCVSDEVYEHMVFE-PFEHIRICTL-P------GMWERTITIGSAGKTF-SLTGWKIGWAY---GPEALLKNLQM 279 (429)
T ss_dssp HHHTCEEEEECTTTTCBCT-TSCCCCGGGS-T------TTGGGEEEEEEHHHHH-TCGGGCCEEEE---SCHHHHHHHHH
T ss_pred HHcCcEEEEeccccccccC-CCCCcChhhc-c------CCcCceEEEecchhcc-CCCCcceEEEE---eCHHHHHHHHH
Confidence 9999999999999998873 3333444332 0 1245789999999999 89999999999 58899999887
Q ss_pred hhh-hcccCChHHHHHHHHhcCC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 302 IAS-IALSPNVPAQIFMGLMVNP-----LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 302 ~~~-~~~~~~~~~q~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
... .+++++.+.|.++..+|+. .. ...+.+++++.++++++.+.+.|++. |+.+..+++++|+|+
T Consensus 280 ~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~ 350 (429)
T 1yiz_A 280 VHQNCVYTCATPIQEAIAVGFETELKRLKS--------PECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVA 350 (429)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHHHTTTTS--------TTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECSBSSEEEE
T ss_pred HHhhcccCCChHHHHHHHHHHhcccccccc--------hHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCcceEEEE
Confidence 664 5678899999998888752 10 12235567888999999999999988 888888889999997
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----CCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----GIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+++-...-+......+..+..+++..+++++||.+.||+.|+... +.+++||+++.+++++++++++|+++++
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 351 DWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKG 427 (429)
T ss_dssp ECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHHHHHHHHHHSC
T ss_pred EcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHHHHHHHHHhcc
Confidence 664210000000000001234556666678999999999887421 2468999999888999999999988763
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=346.20 Aligned_cols=342 Identities=17% Similarity=0.163 Sum_probs=279.7
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
.|+++|||+.|+|++ |. |+.+.+++.+.+.+ ....|++. ..+++++
T Consensus 25 ~g~~~i~~~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~--~~~l~~~ 70 (391)
T 3dzz_A 25 LKEKELPMWIAEMDF------------------------KI-----APEIMASMEEKLKV---AAFGYESV--PAEYYKA 70 (391)
T ss_dssp CCTTCEECCSSCCSS------------------------CC-----CHHHHHHHHHHHTT---CCCCCBCC--CHHHHHH
T ss_pred cCCCceeccccCCCC------------------------CC-----CHHHHHHHHHHHhc---CcCCCCCC--CHHHHHH
Confidence 466899999999886 44 89999999988876 45678775 5899999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c----CCCcccCh
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K----RQQIGVLI 175 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~----~~~~~~d~ 175 (463)
+++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ + ...+.+|+
T Consensus 71 la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 149 (391)
T 3dzz_A 71 VADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT-SPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNW 149 (391)
T ss_dssp HHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCH
T ss_pred HHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC-CCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecH
Confidence 999999999998999999999999999999999997 899999997 56655 2 22355999
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhc
Q 041151 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255 (463)
Q Consensus 176 ~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+.|++++++. ++++|++++||||||.+++.+++++|+++|++||++||+||+|+.+.++ +....++..+...
T Consensus 150 -~~l~~~l~~~-----~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~- 221 (391)
T 3dzz_A 150 -ADLEEKLATP-----SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLT-DEDITPAFTVDWD- 221 (391)
T ss_dssp -HHHHHHHTST-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCS-SCCCCCGGGSCTT-
T ss_pred -HHHHHHHhcc-----CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCC-CCCceehhhcCcc-
Confidence 9999999732 7999999999999999999999999999999999999999999998873 4344455433111
Q ss_pred CCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHH
Q 041151 256 GLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 256 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
..++++++.|+||++ |++|+|+||+++ .++++++.+..... ..++++.+.|.++..++..
T Consensus 222 -----~~d~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------- 283 (391)
T 3dzz_A 222 -----AKNWVVSLISPSKTF-NLAALHAACAII--PNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEE---------- 283 (391)
T ss_dssp -----TGGGEEEEECSHHHH-TCTTTCCEEEEC--CSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH----------
T ss_pred -----ccCcEEEEEeChhhc-cccchhheEEEE--CCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc----------
Confidence 134789999999999 899999999994 23889999887753 3467889999888888741
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p 412 (463)
...+.++++++++++++.+.+.|++ +||+.+..+++++++|++++.. + .+..++...+++++||.+.|
T Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~l~~~~gi~v~~ 352 (391)
T 3dzz_A 284 GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISAL-G----------MNAEDFCKYLREKTGLIISA 352 (391)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGG-C----------SCHHHHHHHHHHHHCEECEE
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhc-C----------CCHHHHHHHHHHhCCEEEeC
Confidence 1334567888899999999999998 8999999999999999665421 0 12455665655689999999
Q ss_pred CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
|+.|+.. +.+++||+++.+++++++++++|+++++++
T Consensus 353 g~~~~~~-~~~~iRis~~~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 353 GNGYRGN-GHEFVRINLACPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp SGGGCTT-GGGEEEEECCSCHHHHHHHHHHHHHHHHTC
T ss_pred chhhCCC-CCCEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 9999863 567999999988899999999999988653
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-43 Score=352.98 Aligned_cols=367 Identities=19% Similarity=0.282 Sum_probs=278.9
Q ss_pred ccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcC
Q 041151 18 VQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTS 97 (463)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~ 97 (463)
...+.++.+...+.+.. .++++|+|+.|.|+... +.+. |+.+++++.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~--------------------~~~~-----~~~v~~a~~~~~~~-- 65 (416)
T 1bw0_A 14 LVFNPIRTVSDNAKPSP-SPKPIIKLSVGDPTLDK--------------------NLLT-----SAAQIKKLKEAIDS-- 65 (416)
T ss_dssp TCCCHHHHHHHTCCCCC-SCSCCEECCCCCTTTTS--------------------CSCC-----CHHHHHHHHHHHHT--
T ss_pred ccccHHHHHHHHHHHhh-cCCCeEEecCcCCCccc--------------------CCCC-----CHHHHHHHHHHhhC--
Confidence 33445665554433222 23569999999986200 0132 88899999888865
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHH------hcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----------
Q 041151 98 GGLGAYSDSRGIPGVRKEVAEFIER------RDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------- 161 (463)
Q Consensus 98 ~~~~~Y~~~~g~~~lr~~ia~~~~~------~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------- 161 (463)
.....|++..|..++|+++++++++ .+|+++++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 66 ~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~ 144 (416)
T 1bw0_A 66 QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC-DAGDYALVPQPGFPHYETV 144 (416)
T ss_dssp TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHH
T ss_pred CccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhC-CCCCEEEEcCCCcHhHHHH
Confidence 2356898888999999999999983 36777889999999999999999999997 899999997
Q ss_pred ---cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 ---FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 ---~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ ...++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|++||++||+||
T Consensus 145 ~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De 217 (416)
T 1bw0_A 145 CKAYGIGMHFYNCRPENDWEADL-DEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDE 217 (416)
T ss_dssp HHHTTCEEEEEEEEGGGTTEECH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHcCcEEEEeecCcccCCCCCH-HHHHHHhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEc
Confidence 56655 223577999 999999876 78999999999999999999999999999999999999999
Q ss_pred cccccccCCCC----CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh-hHHHHH----Hhhh
Q 041151 233 VYQQNIYQDER----PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-KTVDEI----YKIA 303 (463)
Q Consensus 233 ay~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~-~~~~~l----~~~~ 303 (463)
+|..+.|+ +. ...++..+ +..+++|+++|+||+| +++|+|+||+++ .++ ++++.+ .+..
T Consensus 218 ~~~~~~~~-g~~~~~~~~~~~~~--------~~~~~~i~~~s~sK~~-~~~Glr~G~~~~--~~~~~~~~~~~~~~~~~~ 285 (416)
T 1bw0_A 218 IYAGMVFK-GKDPNATFTSVADF--------ETTVPRVILGGTAKNL-VVPGWRLGWLLY--VDPHGNGPSFLEGLKRVG 285 (416)
T ss_dssp TTTTCBCC-SSCTTCCCCCTTSS--------CCSCCEEEEEESTTTT-SCGGGCCEEEEE--ECTTCSCHHHHHHHHHHH
T ss_pred cccccccC-CCCCCCCccCHHHc--------cCCCcEEEEecchhhC-CCCCceEEEEEe--eCchhhHHHHHHHHHHHh
Confidence 99998873 33 23343322 3344689999999998 889999999996 233 344433 3332
Q ss_pred hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhh
Q 041151 304 SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 304 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
...++++.+.|.++..+|+... ..+.++.+++++++++++.+.|+++||+.+..|.+++|+|+.++... .
T Consensus 286 ~~~~~~~~~~~~a~~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~-~ 355 (416)
T 1bw0_A 286 MLVCGPCTVVQAALGEALLNTP---------QEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK-Y 355 (416)
T ss_dssp HHHTCSCHHHHHHHHHHHHSSC---------HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG-B
T ss_pred ccccCCCcHHHHHHHHHHhccc---------HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHH-c
Confidence 2356789999999988875211 23345677889999999999999988998888888999996653110 0
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
....+..+++..+++++||.+.||..|+. .+++||+++.+++++++++++|+++++++.
T Consensus 356 ------~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~iRis~~~~~e~l~~~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 356 ------RDIKTDVEFFEKLLEEENVQVLPGTIFHA---PGFTRLTTTRPVEVYREAVERIKAFCQRHA 414 (416)
T ss_dssp ------SSCCSHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEECCSCHHHHHHHHHHHHHHHHHHB
T ss_pred ------CCCCCHHHHHHHHHHHCCEEEecccccCC---CCeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 00013456666666789999999998874 248999999888999999999999887643
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=347.13 Aligned_cols=363 Identities=18% Similarity=0.216 Sum_probs=288.5
Q ss_pred hhccchhhhhHHHHHHHHHH-hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhh
Q 041151 16 KKVQYAVRGELYLRASELQK-EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLS 94 (463)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~ 94 (463)
..+..++++.+.....++.. +|+++|||+.|.|+. +. |+.+++++.+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~ 71 (437)
T 3g0t_A 21 KDLGMASIRDLVALVTNLEKATGTKFCRMEMGVPGL------------------------PA-----PQIGIETEIQKLR 71 (437)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHTCCCEECCCCSCCS------------------------CC-----CHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhcCCCEEeccCcCCCC------------------------CC-----CHHHHHHHHHHHh
Confidence 34667888888888777653 588899999999885 43 8899999998887
Q ss_pred hcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCC--EEEEc----------
Q 041151 95 LTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD--GVVLL---------- 161 (463)
Q Consensus 95 ~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd--~Vlvp---------- 161 (463)
. .....|++..|..++|+++++++++.+|+++++++|++|+|+++++..++.+++. ++|| +|+++
T Consensus 72 ~--~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~ 149 (437)
T 3g0t_A 72 E--GVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQ 149 (437)
T ss_dssp H--TGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHH
T ss_pred C--CcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHH
Confidence 5 1337899999999999999999999999999999999999999999999999841 5899 99997
Q ss_pred ---cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 162 ---FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 162 ---~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
.|.++ ..+++.+|+ +.|++++++. ++++|++++||||||.+++.+++++|+++|++||++||+||+
T Consensus 150 ~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~ 223 (437)
T 3g0t_A 150 CRILGQKFESFDLFEYRGEKLR-EKLESYLQTG-----QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLA 223 (437)
T ss_dssp HHHHTCCCEEEEGGGGCTTHHH-HHHHHHHTTT-----CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCEEEEEeecCCCCccCH-HHHHHHHhcC-----CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcc
Confidence 55555 245567899 9999999432 799999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCc---cch-HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH-H----------
Q 041151 234 YQQNIYQDERPF---VSS-KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD-E---------- 298 (463)
Q Consensus 234 y~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~-~---------- 298 (463)
|+.+.+++..+. .++ ..+ + +..+++++++|+||++ |++|+|+||+++ ++++++ .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~~~~~~ 292 (437)
T 3g0t_A 224 YFGMDFRKDYSHPGEPLYQPSV-A------NYTDNYILALSSSKAF-SYAGQRIGVLMI---SGKLYEREYPDLEESFGR 292 (437)
T ss_dssp TTTCCTTSCCCSTTSSCCCCCG-G------GTCSCEEEEEESTTTT-SCGGGCCEEEEE---CHHHHHCBCGGGHHHHSC
T ss_pred hhhcccCCCcCcccccchhhcc-C------CCCCcEEEEEcCccCC-CCccceeEEEEE---CHHHhhhhhhcccccccc
Confidence 999877422221 011 122 1 1245789999999999 899999999994 888888 7
Q ss_pred -------HHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-----
Q 041151 299 -------IYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN----- 365 (463)
Q Consensus 299 -------l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~----- 365 (463)
+.+... ..++++.+.|.++..+++. ...+.++.++++++++++++.+.+.|+++ |+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 364 (437)
T 3g0t_A 293 LRFGEALSSSALYALSSGATHSAQWGMAAMLKA-------CNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDG 364 (437)
T ss_dssp SBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHH-------HHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEET
T ss_pred cchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhC-------cHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccC
Confidence 666554 4678899999999988741 00010015678889999999999999998 88887
Q ss_pred --cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHH
Q 041151 366 --FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMES 442 (463)
Q Consensus 366 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~ 442 (463)
++.+++|+|++++ +. +..++.. .|.++||.+.|+..|+.. ..+++|||++ .+++++++++++
T Consensus 365 ~~~~~~~~~~~~~~~---~~----------~~~~l~~-~L~~~gi~v~~~~~~~~~-~~~~iRis~~~~~~e~i~~~~~~ 429 (437)
T 3g0t_A 365 NEPLADGFYFTVGYK---GM----------DSSKLIE-KFVRYGMCAITLKTTGSK-RNEAMRICTSLLPESQFPDLEKR 429 (437)
T ss_dssp TEECCSSSEEEEEET---TC----------CHHHHHH-HHHHTTEECEESTTTTCC-CTTCEEEECSSSCGGGHHHHHHH
T ss_pred CCCCceeEEEEEecC---CC----------CHHHHHH-HHHHcCeEEeeccccCCC-CCCEEEEEEecCCHHHHHHHHHH
Confidence 4489999997665 11 2445544 455679999999999863 3357999999 589999999999
Q ss_pred HHHHHHH
Q 041151 443 FKKFNDE 449 (463)
Q Consensus 443 l~~~l~~ 449 (463)
|++++++
T Consensus 430 l~~~~~~ 436 (437)
T 3g0t_A 430 LQMLNAE 436 (437)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988753
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=345.17 Aligned_cols=365 Identities=17% Similarity=0.208 Sum_probs=283.7
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++++..++++.++.+...+ .++++|||+.|.|+..+ . .++.+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~----------------------~-----~~~~v~~a~ 56 (397)
T 2zyj_A 9 AFGKGAGRIQASTIRELLKLT-----QRPGILSFAGGLPAPEL----------------------F-----PKEEAAEAA 56 (397)
T ss_dssp HSCGGGGGCCCCHHHHHHHHH-----TSTTCEEESSCCCCGGG----------------------C-----CHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHhhc-----cCCCceecCCCCCCchh----------------------C-----CHHHHHHHH
Confidence 488888888888777665432 25679999999887411 1 156788888
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+.+.........|++..|..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 57 ~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~ 129 (397)
T 2zyj_A 57 ARILREKGEVALQYSPTEGYAPLRAFVAEWIG------VRPEEVLITTGSQQALDLVGKVFL-DEGSPVLLEAPSYMGAI 129 (397)
T ss_dssp HHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHHhcchhhhCCCCCCCCHHHHHHHHHHhC------CChhhEEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHH
Confidence 77766421124688888899999999999994 678899999999999999999997 899999997
Q ss_pred -----cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEE-EECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMV-IINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~-l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ +.+..++|+ +.|++.+++. ++++|+ +++||||||.+++.+++++|+++|+++|++||+||
T Consensus 130 ~~~~~~g~~~~~~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De 203 (397)
T 2zyj_A 130 QAFRLQGPRFLTVPAGEEGPDL-DALEEVLKRE-----RPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDD 203 (397)
T ss_dssp HHHHTTCCEEEEEEEETTEECH-HHHHHHHHHC-----CCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHcCCEEEecCcCCCCCCH-HHHHHHHhhc-----CCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 46555 222235899 9999999862 688885 57999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
+|..+.++ +..+.++..+..+. . .+++++++|+||++ + +|+|+||++ +++++++.+..... ..++++.
T Consensus 204 ~~~~~~~~-g~~~~~~~~~~~~~----~-~~~~i~~~s~sK~~-~-~G~r~G~~~---~~~~~~~~l~~~~~~~~~~~~~ 272 (397)
T 2zyj_A 204 AYRELYFG-EARLPSLFELAREA----G-YPGVIYLGSFSKVL-S-PGLRVAFAV---AHPEALQKLVQAKQGADLHTPM 272 (397)
T ss_dssp TTTTCBCS-SCCCCCHHHHHHHH----T-CCCEEEEEESTTTT-C-GGGCCEEEE---CCHHHHHHHHHHHHHHHSSCCH
T ss_pred CcccccCC-CCCCCchhhhCccc----C-CCeEEEEecccccc-c-ccceeEEEe---cCHHHHHHHHHHHHhhcCCCCH
Confidence 99998873 34445565552210 0 03689999999999 7 999999999 58999999887664 4567799
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC-CcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-CR-NVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~p-g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.|.++..+|+.. . + ++.+++++.++++++.+.+.|++ +| |+.+..|.+++|+|++++ .+
T Consensus 273 ~~~~a~~~~l~~~-----~---~-~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~--~~------- 334 (397)
T 2zyj_A 273 LNQMLVHELLKEG-----F---S-ERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELP--KG------- 334 (397)
T ss_dssp HHHHHHHHHHTTT-----H---H-HHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECS--TT-------
T ss_pred HHHHHHHHHHHhC-----C---H-HHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcC--CC-------
Confidence 9999999998632 1 2 44566788899999999999987 57 688888889999996553 22
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+..++... |.++||.+.||..|+.. .+.+++||+++ .+++++++++++|+++++++.+
T Consensus 335 ---~~~~~~~~~-l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 395 (397)
T 2zyj_A 335 ---LSAEGLFRR-ALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGLLA 395 (397)
T ss_dssp ---CCHHHHHHH-HHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHH-HHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 124455544 55669999999988642 23568999999 5789999999999999987654
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=345.98 Aligned_cols=360 Identities=18% Similarity=0.234 Sum_probs=279.2
Q ss_pred CCChhhhhhhhhhccch-hhhhHHHHHHHHHH--hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCC
Q 041151 5 ALDYESMNENVKKVQYA-VRGELYLRASELQK--EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVF 81 (463)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (463)
++....+++++..++++ .+..+......... +++++|+|+.|+|++ +.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~----- 70 (432)
T 3ei9_A 20 YKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTE------------------------PI----- 70 (432)
T ss_dssp CCCSCCCCHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCS------------------------CC-----
T ss_pred eeeccccChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCC------------------------CC-----
Confidence 34456677888888874 66666555444433 356899999999886 54
Q ss_pred cHHHHHHHHHHhhhcC--CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 82 PADAIARAKHYLSLTS--GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
|+.+++++.+++.... ....+|++..|..+||+++++|+. .++.+++++|++|+|+++++..+ ..++ ++||.|+
T Consensus 71 ~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~--~~~~~~~~~i~~t~G~~~al~~l-~~l~-~~gd~Vl 146 (432)
T 3ei9_A 71 PEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFY--GGLGIGDDDVFVSDGAKCDISRL-QVMF-GSNVTIA 146 (432)
T ss_dssp CHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHH-CTTCCEE
T ss_pred CHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHH--ccCCCCcceEEECCChHHHHHHH-HHHc-CCCCEEE
Confidence 8999999998887532 144689888899999999999996 36668889999999999999974 7777 8999999
Q ss_pred Ec-------------cCc------------ee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 160 LL-------------FHT------------TW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 160 vp-------------~g~------------~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
++ .|. ++ + ..++..|+ +. . +++++|++++||||||.+
T Consensus 147 ~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-----~------~~~~~v~l~~p~NPtG~~ 214 (432)
T 3ei9_A 147 VQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDL-ST-----V------GRTDIIFFCSPNNPTGAA 214 (432)
T ss_dssp EEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCG-GG-----C------CCCSEEEEESSCTTTCCC
T ss_pred EeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCCh-hh-----C------CCCCEEEEeCCCCCCCCC
Confidence 97 231 22 1 12333444 32 1 278999999999999999
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
++.+++++|+++|++||++||+||+|.++.++ +. ..++..+ + ...+++|+++||||+| |++|+|+||++
T Consensus 215 ~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~-~~-~~~~~~~-~------~~~~~~i~~~S~SK~~-g~~G~r~G~~~- 283 (432)
T 3ei9_A 215 ATREQLTQLVEFAKKNGSIIVYDSAYAMYMSD-DN-PRSIFEI-P------GAEEVAMETASFSNYA-GFTGVRLGWTV- 283 (432)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTGGGCCS-SC-CSSGGGS-T------TGGGTEEEEEESHHHH-CTTTTCCEEEE-
T ss_pred CCHHHHHHHHHHHHHcCcEEEEccchHhhccC-CC-CCChhhc-C------CCCCeEEEEecchhcc-CCcccceEEEE-
Confidence 99999999999999999999999999998773 32 2344332 1 1234689999999999 99999999999
Q ss_pred cCCChhH--------HHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 289 TNIPPKT--------VDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 289 ~~~~~~~--------~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
+++++ ++.+.+... ...+++.+.|.++.+++.. ....+.+++++.++++++++.+.|+++
T Consensus 284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~ 352 (432)
T 3ei9_A 284 --IPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTP---------EGLEAMHKVIGFYKENTNIIIDTFTSL 352 (432)
T ss_dssp --CCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --EChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 47666 777777654 4566889999999888741 122456778999999999999999998
Q ss_pred CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHH
Q 041151 360 RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAI 439 (463)
Q Consensus 360 pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~ 439 (463)
|+.+..+.+++|+|++++ . .++.+++..+++++||.+.||+.|+. .+.+++|||+..++++++++
T Consensus 353 -g~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~ll~~~gv~v~~g~~f~~-~~~~~iRis~~~~~e~l~~~ 417 (432)
T 3ei9_A 353 -GYDVYGGKNAPYVWVHFP--N-----------QSSWDVFAEILEKTHVVTTPGSGFGP-GGEGFVRVSAFGHRENILEA 417 (432)
T ss_dssp -TCCEEECSSSSEEEEECT--T-----------SCHHHHHHHHHHHHCEECEEGGGGCG-GGTTEEEEECCSCHHHHHHH
T ss_pred -CceecCCCcceEEEEECC--C-----------CCHHHHHHHHHHHCCEEEeCchHhCC-CCCCEEEEEecCCHHHHHHH
Confidence 888888888899996664 1 13566777788888999999999985 35679999999888999998
Q ss_pred HHHHHHH
Q 041151 440 MESFKKF 446 (463)
Q Consensus 440 ~~~l~~~ 446 (463)
+++|++-
T Consensus 418 l~rl~~~ 424 (432)
T 3ei9_A 418 CRRFKQL 424 (432)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888643
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=342.22 Aligned_cols=342 Identities=16% Similarity=0.228 Sum_probs=272.5
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
++++||+.|+++. +. |+.+.+++.+.+.. ....|++. ..++|++++
T Consensus 31 ~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~--~~~l~~~la 76 (399)
T 1c7n_A 31 NEVVPLSVADMEF------------------------KN-----PPELIEGLKKYLDE---TVLGYTGP--TEEYKKTVK 76 (399)
T ss_dssp TTCCCCCSSSCSS------------------------CC-----CHHHHHHHHHHHHH---CCCSSBCC--CHHHHHHHH
T ss_pred CCceeeeecCCCC------------------------CC-----CHHHHHHHHHHHhc---CCCCCCCC--cHHHHHHHH
Confidence 4799999998764 33 78899999888765 34678765 799999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC---C-CcccChHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR---Q-QIGVLIIN 177 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~---~-~~~~d~~~ 177 (463)
+++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +. + .+.+|+ +
T Consensus 77 ~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~-~ 154 (399)
T 1c7n_A 77 KWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT-KPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDF-Q 154 (399)
T ss_dssp HHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCH-H
T ss_pred HHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcH-H
Confidence 9998888988889999999999999999999997 899999997 45555 22 1 355899 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
.|++++++. ++++|++++||||||.+++.+++++|+++|++||++||+||+|..+.++ +....++..+.+++
T Consensus 155 ~l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~~-- 226 (399)
T 1c7n_A 155 KLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP-GYEHTVFQSIDEQL-- 226 (399)
T ss_dssp HHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT-TCCCCCGGGSCHHH--
T ss_pred HHHHHhccC-----CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCcccHHHcCccc--
Confidence 999999732 7999999999999999999999999999999999999999999998873 33334444331110
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc-cCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL-SPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
.++++++.|+||++ |++|+|+||+++ .++++++.+..... ..+ +++.+.|.++.++++. ..
T Consensus 227 ----~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~----------~~ 289 (399)
T 1c7n_A 227 ----ADKTITFTAPSKTF-NIAGMGMSNIII--KNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE----------CG 289 (399)
T ss_dssp ----HTTEEEEECSHHHH-TCGGGCCEEEEC--CCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH----------CH
T ss_pred ----cCcEEEEEeChhhc-cccchheEEEEE--CCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhC----------Ch
Confidence 23689999999999 899999999995 23678898887765 333 6788999988887641 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
++.+++++.++++++.+.+.|++ +||+.+..+++++++|++++ .. + .+..++...+++++||.+.||.
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~--------~-~~~~~~~~~l~~~~gi~v~~g~ 358 (399)
T 1c7n_A 290 KWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFR--AL--------K-MDHKAMEEFMIHKAQIFFDEGY 358 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECG--GG--------C-CCHHHHHHHHHHTTCCCCEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcc--cC--------C-CCHHHHHHHHHHhCCEEEeCcc
Confidence 34566788899999999999998 88999888999999996553 21 0 1244555555557899999999
Q ss_pred CCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.|+. .+.+++||+++..++++++++++|+++++++++
T Consensus 359 ~~~~-~~~~~iRis~~~~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 359 IFGD-GGIGFERINLAAPSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp GGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred ccCC-CCCCeEEEEeccCHHHHHHHHHHHHHHHHHHHh
Confidence 8874 244689999997689999999999999887654
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=344.03 Aligned_cols=359 Identities=18% Similarity=0.226 Sum_probs=263.1
Q ss_pred chhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcC--
Q 041151 20 YAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTS-- 97 (463)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~-- 97 (463)
++.+..+.....+.. .+.++|+|+.|.|+. .|. +.+.+.+++.+.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~-----------------------~~~----~~~~~~~~~~~~~~~~~~~ 65 (417)
T 3g7q_A 14 HSGITRLMEDLNDGL-RTPGAIMLGGGNPAH-----------------------IPA----MQDYFQTLLTDMVESGKAA 65 (417)
T ss_dssp --CHHHHHHHHHC------CCEECSCCCCCC-----------------------CHH----HHHHHHHHHHHHHHHTHHH
T ss_pred cccHHHHHHHHHhhc-cCCCceEecCcCCCC-----------------------CCh----HHHHHHHHHHHHhhCCccc
Confidence 444544444333222 236799999999984 010 01344555555544310
Q ss_pred CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC-----EEEEc---------c-
Q 041151 98 GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD-----GVVLL---------F- 162 (463)
Q Consensus 98 ~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-----~Vlvp---------~- 162 (463)
.....|+++.|..+||+++|+++.+++|+.+++++|++|+|+++++..++.+++ ++|| .|+++ .
T Consensus 66 ~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~~gd~~~~~~vi~~~~p~~~~~~~~ 144 (417)
T 3g7q_A 66 DALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA-GRRADGSTKKVLFPLAPEYIGYADS 144 (417)
T ss_dssp HHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-BC----CCBEEEESSCCCHHHHHC-
T ss_pred ceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc-CCCccCCcceEEEeCCCccccchhh
Confidence 123579999999999999999999999999999999999999999999999997 8987 88874 0
Q ss_pred ----------Ccee---cCC--CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 163 ----------HTTW---KRQ--QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 163 ----------g~~~---~~~--~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
+..+ +.+ .+.+|+ +.|+ +.+ ++++|++++||||||.+++.+++++|+++|++||++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~--~~~------~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~ 215 (417)
T 3g7q_A 145 GLEDDLFVSARPNIELLPEGQFKYHVDF-EHLH--IGE------ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIP 215 (417)
T ss_dssp ----CCEEECCCEEEEEGGGEEEEECCG-GGCC--CCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred ccchhhhccccCcccccCCcccccccCH-HHhc--ccc------CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCE
Confidence 0111 222 467898 8887 444 799999999999999999999999999999999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hc
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IA 306 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~ 306 (463)
||+||+|+.+.. +....... + +..+++|++.|||| + +++|+|+||++ +++++++.+..... ..
T Consensus 216 li~De~~~~~~~--~~~~~~~~---~------~~~~~~i~~~s~sK-~-~~~G~r~G~~~---~~~~~~~~~~~~~~~~~ 279 (417)
T 3g7q_A 216 LVIDNAYGVPFP--GIIFSEAR---P------LWNPNIILCMSLSK-L-GLPGSRCGIII---ANDKTITAIANMNGIIS 279 (417)
T ss_dssp EEEECTTCTTTT--CCBCSCCC---C------CCCTTEEEEEESGG-G-TCTTSCCEEEE---CCHHHHHHHHHHHHHHC
T ss_pred EEEeCCCccccc--cccccccc---c------CCCCCEEEEEechh-c-cCCCcceEEEE---eCHHHHHHHHHhhccee
Confidence 999999986321 11111110 0 22347899999999 7 78999999999 69999999988775 56
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH-HHHHHHHHHHHHHHHhhc-CC--CcccccCCceeEEeeeccCChh
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG-ILESLRRRARMMTDGFNS-CR--NVVCNFTEGAMYSFPQIRLPPK 382 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~-~p--g~~~~~~~g~~~~~~~~~~~~~ 382 (463)
++++.+.|.++..+++... +.++..+ +++.|+++++.+.+.|.+ ++ |+.+..|++++|+|++++.. +
T Consensus 280 ~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~-~ 350 (417)
T 3g7q_A 280 LAPGGMGPAMMCEMIKRND--------LLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDL-P 350 (417)
T ss_dssp CCCCSHHHHHHHHHHHTTC--------HHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTC-S
T ss_pred eCCCcHHHHHHHHHHcCcc--------hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCC-C
Confidence 7789999999999986432 2333333 677889999988888876 55 47778899999999665421 1
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC------CcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG------IFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~------~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+..+++ ..|.++||.+.||+.|+.... .+++|||++.+++++++++++|+++++++.+
T Consensus 351 ----------~~~~~l~-~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~~~~ 415 (417)
T 3g7q_A 351 ----------ITTELLY-QRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVPEPDKIEAGVKILAEEIERAWR 415 (417)
T ss_dssp ----------SCHHHHH-HHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHH-HHHHHCCEEEECchhhCCCCccccccCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHh
Confidence 1234444 456788999999999865321 4699999998889999999999999988765
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=340.12 Aligned_cols=357 Identities=14% Similarity=0.108 Sum_probs=272.2
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCC---CCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVG---NPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.++...+++.++.+...+.+. ...++|||+.| +|+. +.|. ++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~y~d~~~----------------------~~~~-----~~~v~~a~ 53 (397)
T 3fsl_A 3 QKVDAYAGDPILTLMERFKED--PRSDKVNLSIGLYYNEDG----------------------IIPQ-----LQAVAEAE 53 (397)
T ss_dssp TTCCCCCCCHHHHHHHHHHTC--CCSCCEECSSCCCCCTTS----------------------CCCC-----CHHHHHHH
T ss_pred ccCCCCCCCchhhHHHHHhcC--CCCCeEEEeeeEEECCCC----------------------CccC-----cHHHHHHH
Confidence 445567777766665444322 23569999999 5553 2232 58999999
Q ss_pred HH-HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHH--HHHhcCCCCEEEEc---
Q 041151 90 KH-YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTL--NCVIRGEGDGVVLL--- 161 (463)
Q Consensus 90 ~~-~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~--~~l~~~~gd~Vlvp--- 161 (463)
.+ ++.. ....+|++..|..++|+++++++...++..++++ +|++|+|+++++..++ ..++ ++||+|+++
T Consensus 54 ~~~~~~~--~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~-~~gd~vl~~~p~ 130 (397)
T 3fsl_A 54 ARLNAQP--HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FPESGVWVSDPT 130 (397)
T ss_dssp HHHHHSC--CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTTCCEEEESSC
T ss_pred HhhccCc--cccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc-CCCCeEEEeCCC
Confidence 88 7765 2457899989999999999999976555555788 9999999999999995 4566 899999997
Q ss_pred ----------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 ----------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 ----------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
.|.++ + .+++++|+ +.|++.+++. .++++++++++||||||.+++.+++++|+++|+++|
T Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~ 206 (397)
T 3fsl_A 131 WENHVAIFAGAGFEVSTYPWYDEATNGVRF-NDLLATLKTL---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARE 206 (397)
T ss_dssp CHHHHHHHHHTTCCEEEECCEETTTTEECH-HHHHHHHTTC---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHcCCceEEEeeeeccCCcCcH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCC
Confidence 56655 2 35789999 9999999731 116788888999999999999999999999999999
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh---
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI--- 302 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--- 302 (463)
++||+||+|.++.++.+....++..+. + ..+++|+++||||++ |++|+|+||++++.++++.++.+...
T Consensus 207 ~~li~De~~~~~~~~~~~~~~~~~~~~-~------~~~~~i~~~S~SK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~ 278 (397)
T 3fsl_A 207 LIPFLDIAYQGFGAGMEEDAYAIRAIA-S------AGLPALVSNSFSKIF-SLYGERVGGLSVMCEDAEAAGRVLGQLKA 278 (397)
T ss_dssp CEEEEEESCTTSSSCTTGGGHHHHHHH-H------TTCCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEecCchhhccCcccccHHHHHHH-h------cCCCEEEEecccccc-cCcCCCeeEEEEecCCHHHHHHHHHHHHH
Confidence 999999999998873222333444432 2 234789999999999 99999999997533456666554322
Q ss_pred -h-hhcccCChHHHHHHHHhcCCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEEeee
Q 041151 303 -A-SIALSPNVPAQIFMGLMVNPLKPGDISYE-QFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYSFPQ 376 (463)
Q Consensus 303 -~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~~~~ 376 (463)
. ....+++.+.|.++..++.. ..+. .+.++.++++++++++++.+.+.|++++ |+.+..|++++|+|++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~-----~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 353 (397)
T 3fsl_A 279 TVRRNYSSPPNFGAQVVAAVLND-----EALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTG 353 (397)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECC
T ss_pred HHHhccCCCCHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecC
Confidence 1 23455688999999888853 2221 1345567789999999999999999864 7888888999999954
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKF 446 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~ 446 (463)
++ .+.+..+++++||.+.||. ||+++ .+++++++++++|+++
T Consensus 354 ~~-----------------~~~~~~~l~~~gi~v~~g~-----------Ris~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 354 LS-----------------AAQVDRLREEFGVYLIASG-----------RMCVAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp CC-----------------HHHHHHHHHTTCEECCTTC-----------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred CC-----------------HHHHHHHHHhCCEEECCCC-----------eEEEEecCHhhHHHHHHHHHhh
Confidence 42 2335677889999999863 99999 4889999999999875
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=345.64 Aligned_cols=366 Identities=15% Similarity=0.134 Sum_probs=266.8
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCc---CCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPH---ALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
..++++...+.+ +...+.++..++. +|+|+.|.|+ + |. |+.++
T Consensus 9 ~~~~~l~~~~~~----~~~~~~~l~~~~~-~i~l~~g~~~~~~~------------------------~~-----~~~~~ 54 (422)
T 3d6k_A 9 YDAARLAQVREE----VTAKYAELKAKNL-SLDLTRGKPSAEQL------------------------DL-----SNDLL 54 (422)
T ss_dssp ---------CHH----HHHHHHHHHHTTC-CEECCCCSCCHHHH------------------------HT-----TGGGG
T ss_pred CCHHHHHhhHHH----HHHHHHHHhccCC-eEeCCCCCCChhhC------------------------CC-----cHHHH
Confidence 344444444444 3344555665543 8999999997 3 22 44566
Q ss_pred HHHHHHh-hhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHH--HHHHHHHhcCC---------
Q 041151 87 ARAKHYL-SLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGV--MQTLNCVIRGE--------- 154 (463)
Q Consensus 87 ~a~~~~~-~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al--~~~~~~l~~~~--------- 154 (463)
+++.+.+ ........+|+++.|.++||+++|+|++ +++++|++|+|+++++ ..++.++. ++
T Consensus 55 ~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------~~~~~i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~ 127 (422)
T 3d6k_A 55 SLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------LPADLVVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWS 127 (422)
T ss_dssp GCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------CCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGG
T ss_pred HHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------CChhHEEEecchHHHHHHHHHHHHhc-Ccccccccccc
Confidence 6555442 1111135689999999999999999995 7889999999999997 67778886 55
Q ss_pred ---CCEEEEc-------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEE-EECCCCCCccCCCHHHH
Q 041151 155 ---GDGVVLL-------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMV-IINPGNPTGQCLSEANL 214 (463)
Q Consensus 155 ---gd~Vlvp-------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~-l~~p~NPtG~~~s~~~l 214 (463)
+|+|+++ .|+++ +.+..++|+ +.|++.+++. ++++|+ +++||||||.+++.+++
T Consensus 128 ~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~-~~l~~~l~~~-----~~~~v~~~~~~~NPtG~~~~~~~l 201 (422)
T 3d6k_A 128 AEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDM-GVVRELVKDP-----QVKGMWTVPVFGNPTGVTFSEQTC 201 (422)
T ss_dssp GSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETTEECH-HHHHHHHTST-----TEEEEEECCSSCTTTCCCCCHHHH
T ss_pred cCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCCCCCH-HHHHHHHhcC-----CCeEEEEcCCCCCCCCCCCCHHHH
Confidence 3478886 56666 322345999 9999998742 689988 57999999999999999
Q ss_pred HHHHHHhh-hCCeEEEecccccccccC-CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 215 REILRFCY-QENLVLLGDEVYQQNIYQ-DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 215 ~~l~~~a~-~~~~~vi~Deay~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
++|+++|+ ++|++||+||+|..+.|. ++.+..++..+.... +..+++|+++||||+ ++||+|+||++ ++
T Consensus 202 ~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~--~~~GlriG~~~---~~ 272 (422)
T 3d6k_A 202 RELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAA----GNPNRFWFMSSTSKI--THAGSGVSFFA---SS 272 (422)
T ss_dssp HHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHT----TCTTCEEEEEESTTT--SCTTSSCEEEE---CC
T ss_pred HHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhcc----CCCCcEEEEcChhhh--cCcccceEEEE---eC
Confidence 99999999 999999999999863332 222344554432222 334589999999997 45899999999 58
Q ss_pred hhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccC
Q 041151 293 PKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CRNVVCNFT 367 (463)
Q Consensus 293 ~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~pg~~~~~~ 367 (463)
+++++.+.+... ..++++.+.|.++..+|+.. + .+.++.+++++.|+++++.+.+.|.+ ++++.+..|
T Consensus 273 ~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p 345 (422)
T 3d6k_A 273 KENIEWYASHANVRGIGPNKLNQLAHAQFFGDV----A---GLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSP 345 (422)
T ss_dssp HHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCC
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc----c---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCC
Confidence 999999988775 56789999999999998630 2 23445566788888888888887765 334677788
Q ss_pred CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCCCCC--CCCcEEEEEec-CCcCcHHHHHHHH
Q 041151 368 EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGFGQK--EGIFHLRTTIL-PAEEDMPAIMESF 443 (463)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~~~--~~~~~lRis~~-~~~e~i~~~~~~l 443 (463)
++++|+|++++ .. +.+.+..++.++||.++| |..|+.. .+.+++|||++ .+++++++++++|
T Consensus 346 ~~g~~~~~~~~--~~------------~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~~~~e~i~~~~~~l 411 (422)
T 3d6k_A 346 TGGYFISVDVV--PG------------TASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGF 411 (422)
T ss_dssp SBSSCEEEEES--TT------------CHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHH
T ss_pred CcceEEEEECC--CC------------CHHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCCCCHHHHHHHHHHH
Confidence 99999997664 11 233456678899999999 5556421 23569999999 7999999999999
Q ss_pred HHHHHHHHH
Q 041151 444 KKFNDEFME 452 (463)
Q Consensus 444 ~~~l~~~~~ 452 (463)
+++++++.+
T Consensus 412 ~~~l~~~~~ 420 (422)
T 3d6k_A 412 ATCVLMAAL 420 (422)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987754
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=343.59 Aligned_cols=339 Identities=12% Similarity=0.161 Sum_probs=277.5
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
++++|||+.|++++ +. |+.+++++.+.+.. ....|++.. .++++++
T Consensus 60 g~~~i~~~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~~--~~l~~~l 105 (421)
T 3l8a_A 60 NPELLQMWVADMDF------------------------LP-----VPEIKEAIINYGRE---HIFGYNYFN--DDLYQAV 105 (421)
T ss_dssp CTTCEECCSSCCCS------------------------CC-----CHHHHHHHHHHHHH---CCSSCBCCC--HHHHHHH
T ss_pred CCCeeecccCCCCC------------------------CC-----CHHHHHHHHHHHhc---CCcCCCCCC--HHHHHHH
Confidence 77899999998886 44 89999999988876 346777643 8999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c----CCCcccChH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K----RQQIGVLII 176 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~----~~~~~~d~~ 176 (463)
++++.+.+|+++++++|++|+|+++++..++++++ ++||+|+++ .|.++ + ...+.+|+
T Consensus 106 ~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~-~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~- 183 (421)
T 3l8a_A 106 IDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS-EKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDF- 183 (421)
T ss_dssp HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCH-
T ss_pred HHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCH-
Confidence 99999999998899999999999999999999997 899999996 55554 2 33466899
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.|++++++. ++++|++++|+||||.+++.+++++|+++|++||++||+||+|.++.++ +....++..+.+++
T Consensus 184 ~~le~~i~~~-----~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~~- 256 (421)
T 3l8a_A 184 EQLEKDIIDN-----NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALF-GNTHHSLNTLDASY- 256 (421)
T ss_dssp HHHHHHHHHT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT-TCCCCCGGGSCTTG-
T ss_pred HHHHHHhhcc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCccHHHcCchh-
Confidence 9999999842 7999999999999999999999999999999999999999999998883 44444554432221
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQF 334 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~ 334 (463)
.++++++.|+||++ |++|+|+||+++ .++++++.+..... ...+++.+.+.++.++++ ..
T Consensus 257 -----~~~~i~~~s~sK~~-g~~G~~~G~~~~--~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~----------~~ 318 (421)
T 3l8a_A 257 -----KDFTIILSSATKTF-NIAGTKNSFAII--QNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQ----------YG 318 (421)
T ss_dssp -----GGTEEEEECSHHHH-TCGGGCCEEEEC--CSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH----------HC
T ss_pred -----cCcEEEEEeChhhc-cCchhheEeEEc--CCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHh----------cc
Confidence 35789999999999 899999999995 23889998887763 344788899998888864 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 335 VRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
..+++++++.++++++++.+.|++.|++.+..+++++++|++++.+ + .+..+++..+++++||.+.||+
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~-~----------~~~~~l~~~l~~~~gi~v~~g~ 387 (421)
T 3l8a_A 319 KPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAY-A----------IAQPQLSEKLQNEAKVVLNDGA 387 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGG-T----------CCTTHHHHHHHHTTCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEecccc-C----------CCHHHHHHHHHHhCCEEEECch
Confidence 3446678888999999999999887899999999999999766421 1 1244566666677899999999
Q ss_pred CCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
.|+. .+.+++||+++.+++++++++++|+++++
T Consensus 388 ~f~~-~~~~~iRi~~~~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 388 HFGK-EGKYFARLNVATPKNTVQEALSRIISVFG 420 (421)
T ss_dssp GGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHC-
T ss_pred hhCC-CCCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 9986 35679999999889999999999998764
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=337.32 Aligned_cols=350 Identities=20% Similarity=0.320 Sum_probs=278.0
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..++++.++.+...+.+ .++|||+.|.|+. +. |+.+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 48 (381)
T 1v2d_A 3 LHPRTEAAKESIFPRMSGLAQR-----LGAVNLGQGFPSN------------------------PP-----PPFLLEAVR 48 (381)
T ss_dssp CCGGGGGC---CHHHHHHHHHH-----HTCEECCCCSCSS------------------------CC-----CHHHHHHHH
T ss_pred hhhhhhhcCccHHHHHHHHHhc-----CCeEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 6788888888887766554432 4589999999875 33 888999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+++.. ...|++..|..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 49 ~~~~~----~~~y~~~~~~~~l~~~la~~~~------~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~ 117 (381)
T 1v2d_A 49 RALGR----QDQYAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSLV-GPGDEVVVLEPFFDVYLP 117 (381)
T ss_dssp HHTTT----SCSCCCTTCCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHH
T ss_pred HHHHH----hcCCCCCCCCHHHHHHHHHhcC------CChhhEEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHH
Confidence 88764 3479888899999999999976 678899999999999999999997 899999997
Q ss_pred ----cCcee---cC----CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 ----FHTTW---KR----QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 ----~g~~~---~~----~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ +. .++.+|+ +.|++.+++ ++++|++++|+||||.+++.+++++|+++|+++|++||+
T Consensus 118 ~~~~~g~~~~~v~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~ 190 (381)
T 1v2d_A 118 DAFLAGAKARLVRLDLTPEGFRLDL-SALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLIS 190 (381)
T ss_dssp HHHHTTCEEEEEECEEETTEEECCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCCEEEEEeCCCCCccCCcCH-HHHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 45555 22 4578999 999998875 799999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|..+.+ + ....++..+ . . ++++++.|+||++ |++|+|+||++ +++++++.+..... ..+++
T Consensus 191 De~~~~~~~-g-~~~~~~~~~---~----~--~~~~~~~s~sK~~-~~~G~r~G~~~---~~~~~~~~~~~~~~~~~~~~ 255 (381)
T 1v2d_A 191 DEVYDELYY-G-ERPRRLREF---A----P--ERTFTVGSAGKRL-EATGYRVGWIV---GPKEFMPRLAGMRQWTSFSA 255 (381)
T ss_dssp ECTTTTCBS-S-SCCCCHHHH---C----T--TTEEEEEEHHHHT-TCGGGCCEEEE---CCTTTHHHHHHHHHHHTSSC
T ss_pred EcCcccccc-C-CCCCCHHHh---c----C--CCEEEEeechhhc-CCcccceEEEE---eCHHHHHHHHHHHhhcccCC
Confidence 999999876 2 233455443 1 1 3679999999999 89999999999 58889998877664 56788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..+|+. . .+.++.++++++++++++++.+.|++. |+.+..+++++|+|++++ ..
T Consensus 256 ~~~~~~a~~~~l~~-------~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~------- 317 (381)
T 1v2d_A 256 PTPLQAGVAEALKL-------A-RREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP--GW------- 317 (381)
T ss_dssp CHHHHHHHHHHHHH-------H-HHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECT--TC-------
T ss_pred CcHHHHHHHHHHhC-------c-ccHHHHHHHHHHHHHHHHHHHHHHHHC-CCEecCCCcceEEEEecC--hH-------
Confidence 89999988888741 0 012345668889999999999999986 899888888999996553 10
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEecCCcCcHHHHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+ +..+++++||.+.||..|+.. .+.+++||+++.+++++++++++|++++++.++.
T Consensus 318 -----~---~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~~r~~ 374 (381)
T 1v2d_A 318 -----D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNSPREA 374 (381)
T ss_dssp -----C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC------
T ss_pred -----h---HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhcccc
Confidence 2 556788999999999988752 2356899999988899999999999998776553
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=341.97 Aligned_cols=356 Identities=15% Similarity=0.137 Sum_probs=268.5
Q ss_pred HHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH--HHHhhhcCCCCCccCC
Q 041151 28 LRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA--KHYLSLTSGGLGAYSD 105 (463)
Q Consensus 28 ~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~--~~~~~~~~~~~~~Y~~ 105 (463)
+.+.++... ..+|||+.|.|+. ..+ |. ++.+.+++ .+++........+|++
T Consensus 24 ~~~~~~~~~-~~~i~~~~G~p~~-------------------~~~--p~-----~~~~~~~~~~~~~~~~~~~~~~~Y~~ 76 (427)
T 3ppl_A 24 RKFDELKSK-NLKLDLTRGKPSS-------------------EQL--DF-----ADELLALPGKGDFKAADGTDVRNYGG 76 (427)
T ss_dssp HHHHHHHHT-CCCEECCCCSCCH-------------------HHH--HT-----TGGGGGCSCTTCCBCTTSCBTTSSCC
T ss_pred HHHHHhhcC-CceEecCCCCCCh-------------------HHC--CC-----cHHHHHHhhhHHHhhccchhhcCCCC
Confidence 334444433 3579999999984 000 00 12344443 3334332234689999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHH--HHHHHHHhcC--C----------CCEEEEc----------
Q 041151 106 SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGV--MQTLNCVIRG--E----------GDGVVLL---------- 161 (463)
Q Consensus 106 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al--~~~~~~l~~~--~----------gd~Vlvp---------- 161 (463)
..|.++||++||++++ +++++|++|+|+++++ ..++.+++ + | ||+|+++
T Consensus 77 ~~g~~~lr~~ia~~~~------~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~ 149 (427)
T 3ppl_A 77 LDGIVDIRQIWADLLG------VPVEQVLAGDASSLNIMFDVISWSYI-FGNNDSVQPWSKEETVKWICPVPGYDRHFSI 149 (427)
T ss_dssp SSCCHHHHHHHHHHHT------SCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHH
T ss_pred CCCcHHHHHHHHHHhC------CCcceEEEeCCcHHHHHHHHHHHHHh-ccCCcccccccCCCCCEEEEcCCCcHHHHHH
Confidence 9999999999999995 7889999999999999 58888887 6 6 8999997
Q ss_pred ---cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHh-hhCCeEEEeccc
Q 041151 162 ---FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFC-YQENLVLLGDEV 233 (463)
Q Consensus 162 ---~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a-~~~~~~vi~Dea 233 (463)
.|.++ +.+..++|+ +.|+++++.. ++++|+++ +||||||.+++.+++++|+++| +++|++||+||+
T Consensus 150 ~~~~g~~~~~v~~~~~g~d~-~~l~~~l~~~-----~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~ 223 (427)
T 3ppl_A 150 TERFGFEMISVPMNEDGPDM-DAVEELVKNP-----QVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNA 223 (427)
T ss_dssp HHHTTCEEEEEEEETTEECH-HHHHHHTTST-----TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECT
T ss_pred HHHcCCEEEEeCCCCCCCCH-HHHHHHHhcC-----CCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECC
Confidence 66665 333346999 9999998521 79999877 8899999999999999999999 999999999999
Q ss_pred ccccccCCCC-CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCCh
Q 041151 234 YQQNIYQDER-PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNV 311 (463)
Q Consensus 234 y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 311 (463)
|..+.|++.. ++.++..+.... +..+++|+++||||+. ++|+|+||++ +++++++.+.+... ..++++.
T Consensus 224 y~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~~--~~G~r~G~~~---~~~~l~~~~~~~~~~~~~~~~~ 294 (427)
T 3ppl_A 224 YAVHTLTDEFPEVIDIVGLGEAA----GNPNRFWAFTSTSKIT--LAGAGVSFFL---TSAENRKWYTGHAGIRGIGPNK 294 (427)
T ss_dssp TTTCBSSSCCCCCCCHHHHHHHT----TCTTSEEEEEESTTTS--CTTSSCEEEE---CCHHHHHHHHHHHHHHCSCCCH
T ss_pred CcccccCCCCCCccchhhhhhcc----CCCCcEEEEechhhcc--CcCccEEEEE---cCHHHHHHHHHHhhcccCCCCH
Confidence 9998774322 234565543222 2345899999999974 5899999999 68999999988875 6788999
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCceeEEeeeccCChhhHHHH
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CRNVVCNFTEGAMYSFPQIRLPPKAIEAA 387 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~pg~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (463)
+.|.++..++++ ...+.++.++.++.|+++++.+.+.|.+ ++++.+..|++++|+|++++ ..
T Consensus 295 ~~q~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~--~~----- 360 (427)
T 3ppl_A 295 VNQLAHARYFGD-------AEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVV--PG----- 360 (427)
T ss_dssp HHHHHHHHHHCS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECS--TT-----
T ss_pred HHHHHHHHHHhC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECC--cc-----
Confidence 999999999863 1123445566788888888888887754 33577888999999996654 21
Q ss_pred hhcCCCChHHHHHHHHHhcCeEeeC-CCCCCC--CCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 388 KRAGKVPDVFYCLRLLEATGISTVP-GSGFGQ--KEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 388 ~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~~--~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+..+ +...|.++||.++| |..|+. ..+.+++|||++ .+++++++++++|++++++...+
T Consensus 361 ------~~~~-~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~~~~~ 423 (427)
T 3ppl_A 361 ------TASR-VAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLLAAAE 423 (427)
T ss_dssp ------CHHH-HHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------hHHH-HHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2334 45667889999999 555543 135679999999 58899999999999999887543
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-41 Score=338.51 Aligned_cols=362 Identities=12% Similarity=0.105 Sum_probs=270.5
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhc-ccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEG-KKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
++..++...+++.+..+. .++..++ .++|+|+.|.| +..+. | .+.+.+.+
T Consensus 2 ~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~i~l~~g~~~d~~~~---------------------~----~~~~~v~~ 53 (401)
T 7aat_A 2 SWWSHVEMGPPDPILGVT---EAFKRDTNSKKMNLGVGAYRDDNGK---------------------P----YVLNCVRK 53 (401)
T ss_dssp CSSTTCCCCCCCHHHHHH---HHHHHCCCTTCEECCCCSCCCTTSC---------------------C----CCCHHHHH
T ss_pred ChhhcCCCCCCChhHHHH---HHHhhCCCCCceeeeeeeEECCCCC---------------------E----echHHHHH
Confidence 344555566666555444 4444444 34899999998 64111 1 11456777
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHHHHHh--cCCCCEEEEc--
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTLNCVI--RGEGDGVVLL-- 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~--~~~gd~Vlvp-- 161 (463)
++.+.... ....+|++..|.+++|+++++++.+.+|..+++++|++ |+|+++++..++.++. .+|||+|+++
T Consensus 54 a~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p 131 (401)
T 7aat_A 54 AEAMIAAK--KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKP 131 (401)
T ss_dssp HHHHHHHT--TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHhccc--ccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 77666553 24578999999999999999999888888788999987 9999999998887652 1789999996
Q ss_pred -----------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 -----------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 -----------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|.++ + ...+++|+ +.+++.+++. .+++++|++++||||||.+++.+++++|+++|++|
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~ 207 (401)
T 7aat_A 132 SWGNHTPIFRDAGLQLQAYRYYDPKTCSLDF-TGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR 207 (401)
T ss_dssp CCTTHHHHHHHTTCEEEEEECEETTTTEECH-HHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHcCCeeEeeeeeccccCccCH-HHHHHHHHhC---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 56665 2 23689999 9888887641 12689999999999999999999999999999999
Q ss_pred CeEEEecccccccccCCCC--CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh----HHHH
Q 041151 225 NLVLLGDEVYQQNIYQDER--PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK----TVDE 298 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~----~~~~ 298 (463)
|++||+||+|..+.++ +. ...++..+. +...++|+++||||+| |++|+|+||++++.++++ +++.
T Consensus 208 ~~~li~Deay~~~~~~-~~~~~~~~~~~~~-------~~~~~~i~~~S~sK~~-~~~G~RiG~l~~~~~~~~~~~~~~~~ 278 (401)
T 7aat_A 208 NLLAYFDMAYQGFASG-DINRDAWALRHFI-------EQGIDVVLSQSYAKNM-GLYGERAGAFTVICRDAEEAKRVESQ 278 (401)
T ss_dssp TCEEEEEESCTTTTTS-CHHHHTHHHHHHH-------HTTCCCEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHHHHHH
T ss_pred CcEEEEccccccccCC-CccccHHHHHHHH-------hcCCcEEEEecCCccc-ccccCceEEEEEEeCCHHHHHHHHHH
Confidence 9999999999998773 22 122333221 1234789999999999 999999999985444666 4455
Q ss_pred HHhhhh-hcccCChHHHHHHHHhcCCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCceeEE
Q 041151 299 IYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISY-EQFVRESKGILESLRRRARMMTDGFNSC---RNVVCNFTEGAMYS 373 (463)
Q Consensus 299 l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~ 373 (463)
+..... ...+++...|.++..++++ +.+ ..+.++.++++++++++++.+.+.|+++ +++.+..|++++|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~ 353 (401)
T 7aat_A 279 LKILIRPMYSNPPMNGARIASLILNT-----PELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFC 353 (401)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEE
T ss_pred HHHHHHhccCCCChHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceEE
Confidence 555543 4567778888888877752 222 2235567788999999999999999886 24788889999999
Q ss_pred eeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 374 FPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
|++++ .+.+..+++++||.+.|+ +|||++ .+.+++++++++|++++
T Consensus 354 ~~~~~-----------------~~~~~~ll~~~gi~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 354 FTGLK-----------------PEQVERLTKEFSIYMTKD-----------GRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp ECCCC-----------------HHHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred ecCCC-----------------HHHHHHHHHhCCEeccCC-----------CeEEeccCChhhHHHHHHHHHHHh
Confidence 95432 234567788999999763 699999 67788999999998875
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=333.01 Aligned_cols=328 Identities=20% Similarity=0.349 Sum_probs=254.4
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCC--CCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cC
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYP--SDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FH 163 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~--~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g 163 (463)
...|+++.|..+||+++++++++.+|.. +++++|++|+|+++++..++.+++ ++||.|+++ .|
T Consensus 76 ~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~~g 154 (428)
T 1iay_A 76 IANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLRWRTG 154 (428)
T ss_dssp HHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTTTTTC
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC-CCCCeEEEccCCCcchHHHHHHhcC
Confidence 4689988899999999999999888876 778999999999999999999997 899999997 34
Q ss_pred cee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 164 TTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 164 ~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.++ +. +++.+|+ +.|++++++....++++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+
T Consensus 155 ~~~~~v~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 233 (428)
T 1iay_A 155 VQLIPIHCESSNNFKITS-KAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT 233 (428)
T ss_dssp CEEEEECCCTTTTTCCCH-HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred CEEEEeecCCccCCcCCH-HHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence 444 22 4568899 9999999864333447999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFM 317 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~ 317 (463)
.|+ +....++..+..+...+....+++|++.|+||+| |++|+|+||+++ .++++++.+.+... .++++.+.|.++
T Consensus 234 ~~~-~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g~~Glr~G~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~a~ 308 (428)
T 1iay_A 234 VFD-TPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYS--FNDDVVNCARKMSS-FGLVSTQTQYFL 308 (428)
T ss_dssp CCS-SSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEE--SCHHHHHHHHHHHT-TSCCCHHHHHHH
T ss_pred ccC-CCCccCHHHhccccccccCCCCcEEEEecchhhc-CCCCceEEEEEe--CCHHHHHHHHHHHh-cccCCHHHHHHH
Confidence 773 3344455554321000000135789999999999 899999999995 36788888877655 467899999999
Q ss_pred HHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHH
Q 041151 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVF 397 (463)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (463)
..+++. .. ...++.+++++.++++++.+.+.|+++ |+.+..+++++|+|++++ .... .....+..+
T Consensus 309 ~~~l~~-----~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~~~--~~~~----~~~~~~~~~ 374 (428)
T 1iay_A 309 AAMLSD-----EK--FVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLR--PLLR----ESTFDSEMS 374 (428)
T ss_dssp HHHTTC-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECG--GGCS----SSSHHHHHH
T ss_pred HHHhcC-----hH--HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEech--hhcC----CCchhHHHH
Confidence 999863 11 022345568889999999999999998 888888878999996653 2100 000001234
Q ss_pred HHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 398 YCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 398 ~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
+...+++++||.+.||..|+.. +.+++||+++ .+++++++++++|++++++
T Consensus 375 l~~~l~~~~gi~v~~~~~~~~~-~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 375 LWRVIINDVKLNVSPGSSFECQ-EPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHHTSCEECEEGGGGTCS-SSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCEEEeCchhhCCC-CCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 5555555569999999988753 3468999999 8899999999999988754
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=333.73 Aligned_cols=336 Identities=13% Similarity=0.177 Sum_probs=271.6
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
+.++|+|+.|+|+. +. |+.+.+++.+.+.+ ....|++ +..++++++
T Consensus 31 ~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~--~~~~~~~~l 76 (391)
T 4dq6_A 31 TNDLLPMWVADMDF------------------------KA-----APCIIDSLKNRLEQ---EIYGYTT--RPDSYNESI 76 (391)
T ss_dssp CSCSEECCSSSCSS------------------------CC-----CHHHHHHHHHHHTT---CCCCCBC--CCHHHHHHH
T ss_pred CCCceeccccCCCC------------------------CC-----CHHHHHHHHHHHhC---CCCCCCC--CCHHHHHHH
Confidence 46799999998885 44 89999999988875 3456765 568999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC-----CCcccCh
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR-----QQIGVLI 175 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~-----~~~~~d~ 175 (463)
++++.+.+|.++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +. ..+.+|+
T Consensus 77 ~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~ 155 (391)
T 4dq6_A 77 VNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT-KANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDY 155 (391)
T ss_dssp HHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-CTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCH
T ss_pred HHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeH
Confidence 99999999988899999999999999999999997 899999997 56655 22 2355899
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhc
Q 041151 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255 (463)
Q Consensus 176 ~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+.|++++++ +++|++++|+||||.+++.+++++|+++|++||+++|+||+|..+.++ +....++..+.++.
T Consensus 156 -~~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~~ 226 (391)
T 4dq6_A 156 -EDIENKIKD-------VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILK-KHKHIPMASISKEF 226 (391)
T ss_dssp -HHHHHHCTT-------EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT-TCCCCCGGGSCHHH
T ss_pred -HHHHHHhhc-------CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccC-CCCccCHHHcCccc
Confidence 999998763 899999999999999999999999999999999999999999998873 44444544432211
Q ss_pred CCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHHHhcCCCCCCCchHHH
Q 041151 256 GLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 256 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
.++++++.|+||.+ |++|+|+||+++ .++++++.+..... ...+++.+.|.++..++..
T Consensus 227 ------~~~~i~~~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------- 287 (391)
T 4dq6_A 227 ------EKNTITCMAPTKTF-NIAGLQSSYVVL--PDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN---------- 287 (391)
T ss_dssp ------HHTEEEEECSHHHH-TCGGGCCEEEEC--CSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH----------
T ss_pred ------cCcEEEEEechhhc-cCcccceEEEEe--CCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc----------
Confidence 24789999999999 899999999995 33588888887754 2447788899888887641
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p 412 (463)
...+.++.+++++++++.+.+.|++ +||+.+..+++++++|++++.. + .+..++...+++++||.++|
T Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~l~~~~gi~v~~ 356 (391)
T 4dq6_A 288 GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSAL-G----------LSDEELESILVQKGKVALNQ 356 (391)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGG-C----------CCHHHHHHHHHHTTCEECEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhc-C----------CCHHHHHHHHHHhCCEEeeC
Confidence 1234566788899999999999988 7899999999999999665421 1 12455555555555999999
Q ss_pred CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
|+.|+.. +.+++||+++.+++++++++++|++++
T Consensus 357 g~~~~~~-~~~~iRis~~~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 357 GNSFGIG-GSGYQRINLACPRSMLEEALIRIKNAI 390 (391)
T ss_dssp GGGGCTT-CTTEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred chhhCCC-CCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 9999863 567999999988899999999998876
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=333.71 Aligned_cols=337 Identities=15% Similarity=0.180 Sum_probs=266.1
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHH-HHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPG-VRKEV 116 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~-lr~~i 116 (463)
+++|||+.|+++. +. |+.+.+++.+.+.. ....|++. ..+ +|+++
T Consensus 28 ~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~--~~~~lr~~l 73 (390)
T 1d2f_A 28 ADLLPFTISDMDF------------------------AT-----APCIIEALNQRLMH---GVFGYSRW--KNDEFLAAI 73 (390)
T ss_dssp --CEECCSSSCSS------------------------CC-----CHHHHHHHHHHHTT---CCCCCCCS--CCHHHHHHH
T ss_pred CCeeEeeecCCCC------------------------CC-----CHHHHHHHHHHHhC---CCCCCCCC--ChHHHHHHH
Confidence 3689999998774 33 88999999888764 34678775 678 99999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC----CCcccChH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR----QQIGVLII 176 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~----~~~~~d~~ 176 (463)
++++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +. ..|.+|+
T Consensus 74 a~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~- 151 (390)
T 1d2f_A 74 AHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDM- 151 (390)
T ss_dssp HHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCH-
T ss_pred HHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCH-
Confidence 99999888988889999999999999999999997 899999997 56655 21 1456899
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
+.|++++++. ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+.++ +..+.++..+
T Consensus 152 ~~l~~~l~~~-----~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~----- 220 (390)
T 1d2f_A 152 GKLEAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG-EQPHIPWSNV----- 220 (390)
T ss_dssp HHHHHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS-SSCCCCGGGT-----
T ss_pred HHHHHHhccC-----CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCcCHHHc-----
Confidence 9999998742 6899999999999999999999999999999999999999999998873 3444454433
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hc-ccCChHHHHHHHHhcCCCCCCCchHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IA-LSPNVPAQIFMGLMVNPLKPGDISYEQ 333 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~ 333 (463)
+....-+ +.|+||++ |++|+|+||+++ .++++++.+..... .. .+++.+.|.++.++++.
T Consensus 221 ---~~~~~d~-~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---------- 283 (390)
T 1d2f_A 221 ---ARGDWAL-LTSGSKSF-NIPALTGAYGII--ENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQ---------- 283 (390)
T ss_dssp ---CCSSEEE-EECSHHHH-TCGGGCCEEEEE--CSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH----------
T ss_pred ---chhhHhh-ccCccHhh-cccChhheEEEE--CCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhc----------
Confidence 2210113 89999999 899999999995 35788888876543 23 37788888888777631
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC
Q 041151 334 FVRESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p 412 (463)
...+.++.++.++++++.+.+.|++ +||+.+..+++++++|++++ .. + .+..++...+++++||.+.|
T Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~--------~-~~~~~l~~~l~~~~gi~v~~ 352 (390)
T 1d2f_A 284 GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLR--PL--------N-IDDNALQKALIEQEKVAIMP 352 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECG--GG--------C-CCHHHHHHHHHHTTCEECEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEcc--cc--------C-CCHHHHHHHHHHHcCEEeeC
Confidence 1234566788899999999999998 78999888999999996653 21 0 12445555555578999999
Q ss_pred CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
|..|+. .+.+++||+++.+++++++++++|+++++++
T Consensus 353 g~~f~~-~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 353 GYTYGE-EGRGFVRLNAGCPRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp GGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC-CCCCeEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 999874 2446899999977889999999999888654
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=334.00 Aligned_cols=370 Identities=13% Similarity=0.098 Sum_probs=270.3
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
...++++.+++.++...|....++++++..+.|||++|.. +..|.. |. .+.+.+
T Consensus 15 m~~~~~~~~v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~--------------------~v-----l~~Vk~ 69 (420)
T 4h51_A 15 MTTAERWQKIQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRP--------------------YP-----LRVVRK 69 (420)
T ss_dssp CCHHHHHHTCCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCB--------------------CC-----CHHHHH
T ss_pred hhhhHHHhCCCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCC--------------------CC-----CHHHHH
Confidence 4567888888877777888878888888777999999942 221211 22 577887
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHHHHHh---cCCCCEEEEc-
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTLNCVI---RGEGDGVVLL- 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~---~~~gd~Vlvp- 161 (463)
+....+.. ...+.|.|..|+++||+++++++. |.....+ ..+.|.|++.++..++..+. .+|||+|++|
T Consensus 70 A~~~~~~~--~~~~~Y~p~~G~p~lr~aia~~~~---g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~ 144 (420)
T 4h51_A 70 AEQLLLDM--NLDYEYLPISGYQPFIDEAVKIIY---GNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSD 144 (420)
T ss_dssp HHHHHHHT--TCCCCCCCTTCCHHHHHHHHHHHH---C---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEE
T ss_pred HHHHHhcC--CCCCCCCCcCChHHHHHHHHHHhc---CCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 77766655 245679999999999999999974 3223334 34458888888877766654 1699999997
Q ss_pred ------------cCcee-------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ------------FHTTW-------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ------------~g~~~-------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|++. ....+++|+ +.+.+.+... .+++++|++++||||||.+++.+++++|+++|+
T Consensus 145 P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~-~~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~ 220 (420)
T 4h51_A 145 PTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNF-EGMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIASLML 220 (420)
T ss_dssp SCCTHHHHHHHHTTCCCEEEEECEEGGGTEECH-HHHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHcCCeEEEeeccccccccCCCH-HHHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 66542 456678899 9998888753 225677777899999999999999999999999
Q ss_pred hCCeEEEecccccccccCCCCCccch-HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH-
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSS-KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY- 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~- 300 (463)
++++++|+||+|.++.|+ +....+. ..... +...++|++.||||.| +++|+|+||++++....+...++.
T Consensus 221 ~~~~~~~~D~~Y~~~~~~-~~~~~~~~~~~~~------~~~~~~i~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~ 292 (420)
T 4h51_A 221 AKHHQVFFDSAYQGYASG-SLDTDAYAARLFA------RRGIEVLLAQSFSKNM-GLYSERAGTLSLLLKDKTKRADVKS 292 (420)
T ss_dssp HHTCEEEEEESCTTTTTS-CHHHHTHHHHHHH------HTTCCCEEEEECTTTS-CCGGGCEEEEEEECSCHHHHHHHHH
T ss_pred hcCceEeeehhhhhhccC-CcccchHHHHhHH------hhCceEEEEecccccc-ccccCceEEEEecccCHHHHHHHHH
Confidence 999999999999999873 2221121 11112 2334789999999999 999999999986433333333322
Q ss_pred ---hhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CC-cccccCCceeEE
Q 041151 301 ---KIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RN-VVCNFTEGAMYS 373 (463)
Q Consensus 301 ---~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg-~~~~~~~g~~~~ 373 (463)
.... ...+++...|.++..++.++ .....+.++.+.++++|+++|+.|.+.|++. ++ |.++.+++|+|.
T Consensus 293 ~l~~~~r~~~s~~p~~~a~~~~~~l~d~----~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~ 368 (420)
T 4h51_A 293 VMDSLIREEYTCPPAHGARLAHLILSNN----ELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFS 368 (420)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEE
T ss_pred HHHHhhhcccCcchHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEE
Confidence 2222 45778889999999888632 3455567778889999999999999999886 22 666778899999
Q ss_pred eeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHH
Q 041151 374 FPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
|..+. . +.+ ++|+++||++.|++ |||++ .++++++.+.++|++++++..+
T Consensus 369 ~~gls----------------~-e~v-~~L~e~~Vy~~~~g-----------Ris~Agl~~~ni~~~a~aI~~vvr~i~r 419 (420)
T 4h51_A 369 FLGLS----------------K-AQC-EYCQNHNIFITVSG-----------RANMAGLTHETALMLAQTINDAVRNVNR 419 (420)
T ss_dssp ECCCC----------------H-HHH-HHHHHTTEECCTTC-----------EEEGGGCCHHHHHHHHHHHHHHHC----
T ss_pred ecCcC----------------H-HHH-HHHHhCCEEEcCCC-----------EEEeccCCHHHHHHHHHHHHHHHHHhhc
Confidence 94332 2 223 46789999998742 99999 7899999999999999988766
Q ss_pred H
Q 041151 453 Q 453 (463)
Q Consensus 453 ~ 453 (463)
|
T Consensus 420 e 420 (420)
T 4h51_A 420 E 420 (420)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=333.24 Aligned_cols=327 Identities=18% Similarity=0.309 Sum_probs=257.7
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcC--CCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCc
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHT 164 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~ 164 (463)
.+|++..|..+||+++++++++.++ +++++++|++|+|+++++..++.+++ ++||.|+++ .|.
T Consensus 80 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~ 158 (435)
T 3piu_A 80 ALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTGV 158 (435)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTCC
T ss_pred cccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc-CCCCeEEECCCccccHHHHHHHhcCC
Confidence 5799999999999999999986554 56788999999999999999999997 899999997 344
Q ss_pred ee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccc
Q 041151 165 TW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238 (463)
Q Consensus 165 ~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~ 238 (463)
++ + ..++.+|+ +.|++++++....+.++++|++++||||||.+++.+++++|+++|++||++||+||+|..+.
T Consensus 159 ~~~~~~~~~~~~~~~d~-~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 237 (435)
T 3piu_A 159 EIVPIHCTSSNGFQITE-TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTA 237 (435)
T ss_dssp EEEEEECCGGGTSCCCH-HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred EEEEeeCCCccCCcCCH-HHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccc
Confidence 44 2 23467899 99999998765555579999999999999999999999999999999999999999999988
Q ss_pred cCCCCCccchHHHHHhcCCCCCC----CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHH
Q 041151 239 YQDERPFVSSKKVLMDMGLPFSK----EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQ 314 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q 314 (463)
|+ +....++..+.++.+. +. .+++++++||||+| |++|+|+||+++ .++++++.+.+... .+.++.+.|
T Consensus 238 ~~-~~~~~~~~~~~~~~~~--d~~~~~~~~~i~i~s~sK~~-g~~G~r~G~~~~--~~~~~~~~~~~~~~-~~~~~~~~~ 310 (435)
T 3piu_A 238 FS-SPSFISVMEVLKDRNC--DENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYS--NDDMVVAAATKMSS-FGLVSSQTQ 310 (435)
T ss_dssp CS-SSCCCCHHHHHHC---------CGGGGEEEEEESSSSS-CCGGGCEEEEEE--SCHHHHHHHHHHGG-GSCCCHHHH
T ss_pred cC-CCCCcCHHHhcccccc--ccccCCCCCEEEEEeeeccc-CCCceeEEEEEe--CCHHHHHHHHHHhh-cCCCCHHHH
Confidence 83 4455566655432100 10 35789999999999 899999999995 36777787776655 566789999
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC
Q 041151 315 IFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP 394 (463)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (463)
.++.+++... .+ ..++.++.+++++++++.+.+.|++. |+.+..+++++|+|++++-.... ....+
T Consensus 311 ~~~~~~l~~~-----~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~g~~~~~~l~~~~~~------~~~~~ 376 (435)
T 3piu_A 311 HLLSAMLSDK-----KL--TKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRS------NTFEA 376 (435)
T ss_dssp HHHHHHHHCH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSS------SSHHH
T ss_pred HHHHHHhcCh-----HH--HHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCCeeEEEEEEccccccc------CCchh
Confidence 9998887521 11 12345567889999999999999998 89988999999999766411000 00001
Q ss_pred hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecC-CcCcHHHHHHHHHHHHHHHH
Q 041151 395 DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILP-AEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 395 ~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~-~~e~i~~~~~~l~~~l~~~~ 451 (463)
..+++..+++++||.+.||..|+. .+.+++||+++. +++++++++++|+++++++.
T Consensus 377 ~~~~~~~l~~~~gi~v~~g~~~~~-~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 377 EMELWKKIVYEVHLNISPGSSCHC-TEPGWFRVCFANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHHTSCEECEEGGGGTC-SSTTEEEEECSSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCEEEeCCcccCC-CCCCEEEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 345666666777999999999876 356699999994 89999999999999987653
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=340.58 Aligned_cols=367 Identities=13% Similarity=0.143 Sum_probs=274.4
Q ss_pred hhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH--H
Q 041151 14 NVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK--H 91 (463)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~--~ 91 (463)
++..++++.+.++... .+. ..+|||+.|.|+. ..+ |. |+.+.+++. +
T Consensus 6 ~~~~~~~~~~~~~~~~----~~~-~~~i~l~~g~p~~-------------------~~~--~~-----~~~v~~a~~~~~ 54 (423)
T 3ez1_A 6 ASRPALDLARQAYEAF----KAR-GLNLNMQRGQPAD-------------------ADF--DL-----SNGLLTVLGAED 54 (423)
T ss_dssp CCHHHHHHHHHHHHHH----HHH-TCCEESCCCCCCH-------------------HHH--HT-----TGGGGGSCCGGG
T ss_pred HHHHHHHHHHHHHHHh----hcC-CceEecCCCCCCh-------------------HhC--CC-----cHHHHHHHhhhH
Confidence 4555666655554433 222 3579999999992 000 22 556666664 4
Q ss_pred HhhhcCCCCCcc-CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHH--HHHHHHhcC--C---------CCE
Q 041151 92 YLSLTSGGLGAY-SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVM--QTLNCVIRG--E---------GDG 157 (463)
Q Consensus 92 ~~~~~~~~~~~Y-~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~--~~~~~l~~~--~---------gd~ 157 (463)
.+. .......| ++..|.++||+++|++++ +++++|++|+|+++++. .++.+++ + | ||+
T Consensus 55 ~~~-~~~~~~~Yp~~~~g~~~lr~~ia~~~~------~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~gd~ 126 (423)
T 3ez1_A 55 VRM-DGLDLRNYPGGVAGLPSARALFAGYLD------VKAENVLVWNNSSLELQGLVLTFALL-HGVRGSTGPWLSQTPK 126 (423)
T ss_dssp CEE-TTEETTSSCSCTTCCHHHHHHHHHHTT------SCGGGEEECSSCHHHHHHHHHHHHHH-TCCTTCSSCGGGGCCE
T ss_pred Hhh-cchhhhCCCCCCCChHHHHHHHHHHhC------CChhhEEEeCCcHHHHHHHHHHHHHh-ccCCCccccccCCCCE
Confidence 433 21235789 888999999999999985 78899999999999998 8999987 7 7 599
Q ss_pred EEEc-------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHH
Q 041151 158 VVLL-------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 158 Vlvp-------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~ 220 (463)
|+++ .|.++ +.+..++|+ +.|+++++. .+++++|+++ +||||||.+++.+++++|+++
T Consensus 127 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g~d~-~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~ 201 (423)
T 3ez1_A 127 MIVTVPGYDRHFLLLQTLGFELLTVDMQSDGPDV-DAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGL 201 (423)
T ss_dssp EEEEESCCHHHHHHHHHHTCEEEEEEEETTEECH-HHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTC
T ss_pred EEEcCCCcHHHHHHHHHcCCEEEeccCCCCCCCH-HHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHH
Confidence 9997 56665 333346999 999999961 1179999766 899999999999999999999
Q ss_pred h-hhCCeEEEecccccccccCC-C-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH
Q 041151 221 C-YQENLVLLGDEVYQQNIYQD-E-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 221 a-~~~~~~vi~Deay~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
| +++|++||+||+|..+.|.+ + .+..++..+.... +..+++|+++||||++ ++|+|+||++ +++++++
T Consensus 202 a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~S~sK~~--~~G~r~G~~~---~~~~~~~ 272 (423)
T 3ez1_A 202 QAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDA----GYPDRAFVFASTSKIT--FAGAGLGFVA---SSEDNIR 272 (423)
T ss_dssp CCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHH----TCTTSEEEEEESTTTS--CSSSSCEEEE---ECHHHHH
T ss_pred HHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhcc----CCCCeEEEEeCchhhc--cCCcceEEEE---eCHHHHH
Confidence 9 99999999999999766633 2 2344665553322 3445899999999974 4899999999 5899999
Q ss_pred HHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC-CcccccCCcee
Q 041151 298 EIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CR-NVVCNFTEGAM 371 (463)
Q Consensus 298 ~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~p-g~~~~~~~g~~ 371 (463)
.+.+... ..++++.+.|.++..++++. .+ .+.++.++.++.|+++++.+.+.|.+ ++ ++.+..|++++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~ 346 (423)
T 3ez1_A 273 WLSKYLGAQSIGPNKVEQARHVKFLTEY---PG---GLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGY 346 (423)
T ss_dssp HHHHHHHHSCSCCCHHHHHHHHHHHHHS---TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSS
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHhc---cc---hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccE
Confidence 9988875 56889999999999888520 01 23344556677777777777766654 43 37778889999
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCCCC--CCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGFGQ--KEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f~~--~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
|+|++++-. +.+.+..+|.++||.++| |..|+. ..+.+++||+++ .+++++++++++|++++
T Consensus 347 ~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l 412 (423)
T 3ez1_A 347 FISLDTAEP--------------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRPPVEEVRTAMQVVAACI 412 (423)
T ss_dssp CEEEEESSS--------------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCC--------------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 999766411 234456778899999999 667753 234579999999 58999999999999999
Q ss_pred HHHHHH
Q 041151 448 DEFMEQ 453 (463)
Q Consensus 448 ~~~~~~ 453 (463)
++...+
T Consensus 413 ~~~~~~ 418 (423)
T 3ez1_A 413 RLATEE 418 (423)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987654
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=349.98 Aligned_cols=329 Identities=17% Similarity=0.237 Sum_probs=247.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHH-HHhcCCCC---CCCcEEEcCCcHHHHHHHHHH-----Hhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFI-ERRDGYPS---DPELIFLTDGASKGVMQTLNC-----VIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~-~~~~g~~~---~~~~i~~t~G~~~al~~~~~~-----l~~ 152 (463)
++.+++++.+.+.. ..|+++.|..++|+++++++ .++++..+ ++++|++|+|+++++..++.+ ++
T Consensus 118 ~~~~~~al~~~~~~-----~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~- 191 (546)
T 2zy4_A 118 PAAFLHEMVDGILG-----CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLL- 191 (546)
T ss_dssp HHHHHHHHHHHHHT-----CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS-
T ss_pred ChHHHHHHHHhhhc-----CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcC-
Confidence 56677777666542 58999999999999988765 44444322 568999999999999999998 45
Q ss_pred CCCCEEEEc---------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 153 GEGDGVVLL---------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 153 ~~gd~Vlvp---------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
+|||.|+++ .|.++ .+.+|.+|+ +.|++.+.. ++++|++|+||||||.+++.
T Consensus 192 ~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~~~~------~~k~v~l~~p~NPtG~~~~~ 264 (546)
T 2zy4_A 192 KAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPD-SELDKLKDP------AIKIFFCVNPSNPPSVKMDQ 264 (546)
T ss_dssp CTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCH-HHHGGGGST------TEEEEEEESSCSSSCBCCCH
T ss_pred CCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCH-HHHHHhhCC------CCeEEEEECCCCCCCccCCH
Confidence 899999997 24444 234577999 999887654 79999999999999999999
Q ss_pred HHHHHHHHHh--hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 212 ANLREILRFC--YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 212 ~~l~~l~~~a--~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+++++|+++| +++|++||+||+|.++.+ + ..++... . .+++|+++||||++ |++|+|+||++.
T Consensus 265 ~~l~~l~~~a~~~~~~~~ii~De~y~~~~~-~---~~s~~~~--------~-~~~~i~~~S~SK~~-g~~GlRiG~~~~- 329 (546)
T 2zy4_A 265 RSLERVRNIVAEHRPDLMILTDDVYGTFAD-D---FQSLFAI--------C-PENTLLVYSFSKYF-GATGWRLGVVAA- 329 (546)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEECTTGGGST-T---CCCHHHH--------C-GGGEEEEEESTTTT-TCGGGCEEEEEE-
T ss_pred HHHHHHHHHHHhccCCcEEEEeCcchhhcc-c---CcCHHHh--------C-CCCEEEEEeCcccc-CCCCcceEEEEE-
Confidence 9999999999 889999999999998765 2 3455443 2 23789999999999 899999999995
Q ss_pred CCChh-HHHHHHhhh-------------------------------------hhcccCChHHHHHH-----HHhcCCCCC
Q 041151 290 NIPPK-TVDEIYKIA-------------------------------------SIALSPNVPAQIFM-----GLMVNPLKP 326 (463)
Q Consensus 290 ~~~~~-~~~~l~~~~-------------------------------------~~~~~~~~~~q~~~-----~~~l~~~~~ 326 (463)
+++ +++.+.+.. ....+++.+.|.++ .+++++.
T Consensus 330 --~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~-- 405 (546)
T 2zy4_A 330 --HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEA-- 405 (546)
T ss_dssp --ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTT--
T ss_pred --CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhcc--
Confidence 553 777663211 11246788888874 2444421
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC------ChhhHHHHhhcCCCChHHHHH
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL------PPKAIEAAKRAGKVPDVFYCL 400 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 400 (463)
..+.+.+++.|+++++.+.+.|. . ++.+.+++++||+|++++. ..++..-.+. +. ++.+++.
T Consensus 406 --------~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~-~~-~~~~~l~ 473 (546)
T 2zy4_A 406 --------DEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVK-QS-STGDMLF 473 (546)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHH-HC-CHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhc-cC-CHHHHHH
Confidence 12234567789999999999996 5 5666778999999977641 0000000000 11 2456677
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHHhcc
Q 041151 401 RLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQYED 456 (463)
Q Consensus 401 ~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~~~~ 456 (463)
++++++||.+.||+.|+. +.+++||+++ .+++++++++++|++++++++++|+.
T Consensus 474 ~ll~~~gV~v~pG~~F~~--~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~~~~~~ 528 (546)
T 2zy4_A 474 RIADETGIVLLPGRGFGS--NRPSGRASLANLNEYEYAAIGRALRKMADELYAEYSG 528 (546)
T ss_dssp HHHHHHSCCCEESSCTTC--SSCEEEEESSSSCHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHCCEEEeCccccCC--CCCeEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999986 3468999999 58899999999999999999998883
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=336.41 Aligned_cols=369 Identities=16% Similarity=0.183 Sum_probs=273.1
Q ss_pred hhhhhhhc-cchhhhhHHHHHHHHHHhcccce-eccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 11 MNENVKKV-QYAVRGELYLRASELQKEGKKII-FTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i-~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
+|.+..++ +++.++.++....+.... +++| +|+.|.|+. ++.+.++
T Consensus 4 ~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~g~p~~-------------------------------~~~~~~~ 51 (444)
T 3if2_A 4 FSKFGQKFTQPTGISQLMDDLGDALKS-DQPVNMLGGGNPAK-------------------------------IDAVNEL 51 (444)
T ss_dssp CCHHHHHHHSCCHHHHHHHHHHHHHHS-SSCCEECSCCCCCC-------------------------------CHHHHHH
T ss_pred cchhhhhccCchhHHHHHHHHHhhhcC-chhhhccCCCCCCc-------------------------------ccchHHH
Confidence 34444443 356677777666555433 6799 999999995 3333344
Q ss_pred H----HHHhhh-------c--CCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 89 A----KHYLSL-------T--SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 89 ~----~~~~~~-------~--~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
+ .+.+.+ . .....+|++..|.++||+++|+|+.+.+|+.+++++|++|+|+++++..++.+++ ++|
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~~g 130 (444)
T 3if2_A 52 FLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG-GAF 130 (444)
T ss_dssp HHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh-CCC
Confidence 3 333332 1 0113679999999999999999999999999999999999999999999999997 888
Q ss_pred C--------------EEEEc--------c------------Ccee---cCC------CcccChHHHHHHHHHHHHhcCCc
Q 041151 156 D--------------GVVLL--------F------------HTTW---KRQ------QIGVLIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 156 d--------------~Vlvp--------~------------g~~~---~~~------~~~~d~~~~l~~~l~~~~~~~~~ 192 (463)
| .|+++ . |..+ +.+ .+++|+ +.|+++++.. .++
T Consensus 131 d~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~-~~l~~~l~~~---~~~ 206 (444)
T 3if2_A 131 VNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDF-EALENLPALK---EGR 206 (444)
T ss_dssp ECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCH-HHHHTCHHHH---TTC
T ss_pred ccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccccCCCH-HHHHHHHHhc---CCC
Confidence 8 77763 1 1111 211 357999 9999984321 117
Q ss_pred eeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC
Q 041151 193 VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS 272 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 272 (463)
+++|++++||||||.+++.+++++|+++|++||++||+||+|+.+.. ........ + ...+++|+++|||
T Consensus 207 ~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~--~~~~~~~~---~------~~~~~~i~~~S~s 275 (444)
T 3if2_A 207 IGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFP--NIIYSDAH---L------NWDNNTILCFSLS 275 (444)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTT--CCBCSCCC---C------CCCTTEEEEEEST
T ss_pred ceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCccc--cccccccc---c------cCCCCEEEEechh
Confidence 99999999999999999999999999999999999999999986321 11111100 0 1234789999999
Q ss_pred cccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH-HHHHHHHHHH
Q 041151 273 KGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG-ILESLRRRAR 350 (463)
Q Consensus 273 K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 350 (463)
| + +++|+|+||++ +++++++.+..... ..++++.+.|.++..+++.. . +..+..+ +++.|+++++
T Consensus 276 K-~-~~~G~r~G~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~---~~~~~~~~~~~~~~~~~~ 342 (444)
T 3if2_A 276 K-I-GLPGMRTGIIV---ADAKVIEAVSAMNAVVNLAPTRFGAAIATPLVAND-----R---IKQLSDNEIKPFYQKQAT 342 (444)
T ss_dssp T-T-TCGGGCCEEEE---CCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHTS-----H---HHHHHHHTHHHHHHHHHH
T ss_pred h-c-cCCCCceEEEE---ECHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcC-----c---hhHHHHHHHHHHHHHHHH
Confidence 9 4 67999999999 69999999988775 56788999999999988632 2 2333333 6778888888
Q ss_pred HHHHHhhc-CC--CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC-------
Q 041151 351 MMTDGFNS-CR--NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE------- 420 (463)
Q Consensus 351 ~l~~~L~~-~p--g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~------- 420 (463)
.+.+.|.+ ++ ++.+..|++++|+|++++.. + .+..+++ ..|.++||.+.||+.|....
T Consensus 343 ~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~-~----------~~~~~l~-~~l~~~gi~v~~g~~~~~~~~~~~~~~ 410 (444)
T 3if2_A 343 LAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDL-P----------ISTLDLY-ERLKAKGTLIVPSEYFFPGVDVSDYQH 410 (444)
T ss_dssp HHHHHHHHHSSSSSEEEECCCBSSEEEEEETTC-S----------SCHHHHH-HHHHHTTEECEEGGGSCTTCCCTTCSG
T ss_pred HHHHHHHHhcccCCceEecCCccEEEEEEcCCC-C----------CCHHHHH-HHHHHCCeEEecchhhcCCCCCccccc
Confidence 88888866 55 45677889999999766521 1 1234444 45678899999999986421
Q ss_pred CCcEEEEEecCCcCcHHHHHHHHHHHHHHHHH
Q 041151 421 GIFHLRTTILPAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 421 ~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
..+++|||++.+++++++++++|+++++++++
T Consensus 411 ~~~~iRis~~~~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 411 AHECIRMSIAADEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp GGSEEEEESSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHc
Confidence 23689999998889999999999999987753
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=337.61 Aligned_cols=339 Identities=13% Similarity=0.150 Sum_probs=265.3
Q ss_pred cccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHH--HHHHHHHhhhcCCCCCccCCCCCCHHHH
Q 041151 37 GKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADA--IARAKHYLSLTSGGLGAYSDSRGIPGVR 113 (463)
Q Consensus 37 ~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~a~~~~~~~~~~~~~~Y~~~~g~~~lr 113 (463)
.+++|||+.|.| +. +. |+.+ ++++.+.+.. ....+|++..|..++|
T Consensus 46 ~~~~i~l~~g~~~~~------------------------~~-----~~~~~~~~a~~~~~~~--~~~~~y~~~~g~~~lr 94 (430)
T 2x5f_A 46 KSTTYNATIGMATNK------------------------DG-----KMFASSLDAMFNDLTP--DEIFPYAPPQGIEELR 94 (430)
T ss_dssp TTCSEECCCSSCEET------------------------TE-----ECCCHHHHTTBSSCCG--GGTSSCCCTTCCHHHH
T ss_pred CCCcEEeeeeeccCC------------------------CC-----chhhHHHHHHHHhcCc--ccccccCCCCCCHHHH
Confidence 356899999999 74 21 3333 5555444432 1356899988999999
Q ss_pred HHHHHHHHHhcCCCCCCCc---EEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCcee---cCC--Cc
Q 041151 114 KEVAEFIERRDGYPSDPEL---IFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHTTW---KRQ--QI 171 (463)
Q Consensus 114 ~~ia~~~~~~~g~~~~~~~---i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~~~---~~~--~~ 171 (463)
+++++++.+++ +.+++++ |++|+|+++++..++.+++ ++||+|+++ .|.++ +.+ ++
T Consensus 95 ~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~ 172 (430)
T 2x5f_A 95 DLWQQKMLRDN-PELSIDNMSRPIVTNALTHGLSLVGDLFV-NQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDG 172 (430)
T ss_dssp HHHHHHHHHHC-TTCCGGGBCCCEEESHHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTS
T ss_pred HHHHHHHhccC-cccCCCccceEEEcCCchHHHHHHHHHHh-CCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccC
Confidence 99999997664 6678889 9999999999999999997 899999997 24444 211 36
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh-----CCeEEEecccccccccCCCCCcc
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ-----ENLVLLGDEVYQQNIYQDERPFV 246 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~-----~~~~vi~Deay~~~~~~~~~~~~ 246 (463)
++|+ +.|++.+++. +.++++|++++||||||.+++.+++++|+++|++ +|++||+||+|..+.++ +.+..
T Consensus 173 ~~d~-~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~-~~~~~ 247 (430)
T 2x5f_A 173 HYTT-DSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYE-DVYTQ 247 (430)
T ss_dssp CBCS-HHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCS-SSCCS
T ss_pred CcCH-HHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCC-cccch
Confidence 8999 9999999752 1258999999999999999999999999999999 99999999999998873 33344
Q ss_pred chH-HHHHhcCCCCCCCce---EEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-----hcccCChHHHHHH
Q 041151 247 SSK-KVLMDMGLPFSKEVQ---LVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-----IALSPNVPAQIFM 317 (463)
Q Consensus 247 ~~~-~~~~~~~~~~~~~~~---~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~q~~~ 317 (463)
++. .+. + ..++ +|+++|+||+| |++|+|+||+++.+.++++++.+..... ..++++.+.|.++
T Consensus 248 ~~~~~~~-~------~~~~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 319 (430)
T 2x5f_A 248 SLFTALT-N------LHSNAILPIRLDGATKEF-FAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAV 319 (430)
T ss_dssp CHHHHHH-T------TCCTTEEEEEEEEHHHHT-TCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHh-h------ccCCcceEEEEEecccCC-CCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHH
Confidence 554 441 1 1335 89999999999 8999999999921118889988876553 3567899999999
Q ss_pred HHhcC-CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCcccccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 318 GLMVN-PLKPGDISYEQFVRESKGILESLRRRARMMTDGFN----SCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 318 ~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~----~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
..+|+ . . .+.++++++++.++++++.+.+.|+ +. |+.+..+++++|+|++++ ..
T Consensus 320 ~~~l~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~-~~----------- 378 (430)
T 2x5f_A 320 KHVLKNN-----K---QFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVH-DV----------- 378 (430)
T ss_dssp HHHHHSC-----H---HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEES-SS-----------
T ss_pred HHHHccC-----h---HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCC-CC-----------
Confidence 99884 3 1 2455566689999999999999998 55 788888999999997664 11
Q ss_pred CChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..+++..+++++||.+.|| +.+++||+++ .+++++++++++|+++++++
T Consensus 379 -~~~~~~~~l~~~~gi~v~~g-------~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 379 -DPEALRKHLIDKYSIGVIAL-------NATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429 (430)
T ss_dssp -CHHHHHHHHHHHHCEECEEC-------SSSEEEEEGGGSCGGGHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhCCEEEecC-------CCCeEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 24556666555589999997 2348999999 99899999999999998764
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=340.10 Aligned_cols=355 Identities=12% Similarity=0.081 Sum_probs=255.1
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHh-cccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKE-GKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
.++++++.+.+++++..+... .+++ .+++|||+.|+| +. +. |+.+.
T Consensus 14 ~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~i~l~~g~~~d~------------------------~~-----~~~v~ 61 (409)
T 4eu1_A 14 AQTQGPGSMGKPDPILGLGQD---FRMDPAKRKVNLSIGVYRDD------------------------AD-----QPFVL 61 (409)
T ss_dssp -------------CHHHHHHH---HHHCCCSSCEECCCSSCCCT------------------------TS-----CCCCC
T ss_pred hhHhhcCCCCCCChHHHHHHH---HhhCCCcCceeeeeeEEECC------------------------CC-----CEeec
Confidence 367889999999976655544 3433 456999999998 64 22 44455
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEE--EcCCcHHHHHHHH---HHHhcCCCCEEEEc
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIF--LTDGASKGVMQTL---NCVIRGEGDGVVLL 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~~---~~l~~~~gd~Vlvp 161 (463)
+++.++.. ....+|++..|.++||+++++++....+.++++++|. .|.|+++++..+. .+++ ++||.|+++
T Consensus 62 ~a~~~a~~---~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~-~~gd~Vlv~ 137 (409)
T 4eu1_A 62 ECVKQATL---GTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFV-ANCNRIYGP 137 (409)
T ss_dssp HHHHTCCC---CSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTS-SSCCEEEEE
T ss_pred HHHHhcCc---cccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhc-CCCCEEEEe
Confidence 66655522 2567899999999999999999853222223377884 5888888888764 3444 799999997
Q ss_pred -------------cCcee---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 -------------FHTTW---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 -------------~g~~~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ + .+++++|+ +.|++.+++. ..+++++++++||||||.+++.+++++|+++|+
T Consensus 138 ~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~ 213 (409)
T 4eu1_A 138 DVGYPNHESIFAKAGMELTPYSYYDPATKGLNL-AGMLECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIK 213 (409)
T ss_dssp SSCCTHHHHHHHHTTCEEEEECCEETTTTEECH-HHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcH-HHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHH
Confidence 56665 2 45689999 9999999741 014566677899999999999999999999999
Q ss_pred hCCeEEEecccccccccCCCC--CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE--EecCCChh----
Q 041151 223 QENLVLLGDEVYQQNIYQDER--PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF--EMTNIPPK---- 294 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~--~~~~~~~~---- 294 (463)
++|++||+||+|.++.++ +. ...++..+. +...++|+++||||+| |++|+|+||+ ++ ++++
T Consensus 214 ~~~~~li~De~y~~~~~~-~~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-g~~G~riG~~~~v~--~~~~~~~~ 282 (409)
T 4eu1_A 214 RRNHIPFVDMAYQGFATG-QLDYDAFVPRHLV-------DMVPNLIVAQSFSKNF-GLYGHRCGALHIST--ASAEEAKR 282 (409)
T ss_dssp HTTCEEEEEESCTTTTTS-CHHHHTHHHHHHH-------TTSSCCEEEEECTTTS-SCGGGCCEEEEEEC--SSHHHHHH
T ss_pred hCCcEEEEeccccccccC-CcccchHHHHHHH-------hhCCcEEEEecCcccc-cCccCCceEEEEEe--CCHHHHHH
Confidence 999999999999998873 21 112333321 2234689999999999 9999999997 54 6777
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----cccccCCc
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN----VVCNFTEG 369 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg----~~~~~~~g 369 (463)
+++.+.+... ...+++.+.|.++..++++. ....++.++.++++++++++++++.+.|+++ | +.+..|++
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~ 357 (409)
T 4eu1_A 283 LVSQLALLIRPMYNNPPLYGAWVVSSILKDP----QLTALWKKELKQMSSRIAEVRKRLVSELKAC-GSVHDWSHIERQV 357 (409)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCSCCHHHHHSC
T ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCcceecCCc
Confidence 6666666553 45677899999999888531 1123345557788999999999999999987 4 78888999
Q ss_pred eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 370 AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
++|+|++++ .+++..+++++||.+.|| .||+++ .+++++++++++|++++
T Consensus 358 ~~~~~~~~~-----------------~~~~~~ll~~~gv~v~p~-----------~Ri~~~~~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 358 GMMAYTGLT-----------------REQVELLRSEYHIYMTLN-----------GRAAVSGLNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp SSEEECCCC-----------------HHHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred eEEEEeCCC-----------------HHHHHHHHHcCCEEEcCC-----------CEEEEEecCHhhHHHHHHHHHHHh
Confidence 999994432 234677888899999984 389999 77889999999998875
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=327.26 Aligned_cols=341 Identities=15% Similarity=0.166 Sum_probs=267.2
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++.+..+.++..+.-.....+ +-..+++|+|+.|.+.+ +. |+.+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 53 (365)
T 3get_A 4 FNEFLNNLSNYEPGKDIEVIAK-EYGVKEVIKLASNENPF------------------------GT-----PPKAIECLR 53 (365)
T ss_dssp CCGGGGGSCCCCCCCCHHHHHH-HTTCSCCEECSSCCCTT------------------------CS-----CHHHHHHHH
T ss_pred cchhHhhcCCCCCCCCHHHHHH-hcCCCceEEecCCCCCC------------------------CC-----CHHHHHHHH
Confidence 3455556655443332221111 11236799999998775 44 889999998
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ...|++..+ .++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 54 ~~~~~----~~~y~~~~~-~~lr~~la~~~~------~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~ 121 (365)
T 3get_A 54 QNANK----AHLYPDDSM-IELKSTLAQKYK------VQNENIIIGAGSDQVIEFAIHSKL-NSKNAFLQAGVTFAMYEI 121 (365)
T ss_dssp HHGGG----TTSCCCTTC-HHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEECSSCCTHHHH
T ss_pred HHHHh----hccCCCCCh-HHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCChHHHHH
Confidence 88764 467888766 899999999986 678999999999999999999997 899999997
Q ss_pred ----cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 ----FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 ----~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ + .+++ +|+ +.|++++++ ++++|++++||||||.+++.+++.+|+++| ++|+++|+||
T Consensus 122 ~~~~~g~~~~~v~~~~~~~-~d~-~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De 192 (365)
T 3get_A 122 YAKQCGAKCYKTQSITHNL-DEF-KKLYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGV-NEDCLVVIDA 192 (365)
T ss_dssp HHHHHTCEEEECSSSSCCH-HHH-HHHHHHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CTTSEEEEEC
T ss_pred HHHHcCCEEEEEecCCCCC-CCH-HHHHHHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CCCcEEEEeC
Confidence 56665 3 4667 999 999999986 899999999999999999999999999999 5799999999
Q ss_pred ccccccc--CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCC
Q 041151 233 VYQQNIY--QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPN 310 (463)
Q Consensus 233 ay~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~ 310 (463)
+|+.+.| .+.. ..+...... ..+++++++|+||++ |++|+|+||+++ ++++++.+..... .++++
T Consensus 193 ~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~~~~~~~-~~~~~ 259 (365)
T 3get_A 193 AYNEFASFKDSKK-HLEPCELIK-------EFDNVLYLGTFSKLY-GLGGLRIGYGIA---NANIISAFYKLRA-PFNVS 259 (365)
T ss_dssp TTHHHHHHHCGGG-CCCHHHHHH-------HCTTEEEEEESSSTT-SCTTTCCEEEEE---CHHHHHHHHHHSC-TTCSC
T ss_pred ccHHHhcccCCcc-cccHhHHhc-------cCCCEEEEeecchHh-cCcchheEEEEc---CHHHHHHHHHhcC-CCCcC
Confidence 9998774 2222 233333322 224689999999999 899999999994 8999999988776 46789
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..+++. ..+.++.+++++++++.+.+.|+++ |+.+.++.++ |+|++++ ..
T Consensus 260 ~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~-~~~~~~~--~~-------- 316 (365)
T 3get_A 260 NLALKAAVAAMDD-----------DEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSYTN-FITYFFD--EK-------- 316 (365)
T ss_dssp HHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSSS-EEEEECS--SS--------
T ss_pred HHHHHHHHHHhCC-----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCCCe-EEEEECC--CC--------
Confidence 9999999999862 1445667888999999999999998 8888776665 4775543 21
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
+..++. ..|.++||.+.||..|+ .+++||+++ +++++++++++|++++
T Consensus 317 ---~~~~~~-~~l~~~gi~v~~g~~~~----~~~iRis~~-~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 317 ---NSTDLS-EKLLKKGIIIRNLKSYG----LNAIRITIG-TSYENEKFFTEFDKIL 364 (365)
T ss_dssp ---CHHHHH-HHHHTTTEECEECGGGT----CSEEEEECC-CHHHHHHHHHHHHHHH
T ss_pred ---CHHHHH-HHHHHCCEEEEECccCC----CCEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 244444 45667899999999987 348999999 6689999999998875
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=331.89 Aligned_cols=367 Identities=12% Similarity=0.079 Sum_probs=278.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
++++++...+++.++.+...+.+. +++++|||+.|.| +..|. .+ .++.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~--------------------~~-----~~~~v~~a 56 (412)
T 1ajs_A 4 SVFAEVPQAQPVLVFKLIADFRED--PDPRKVNLGVGAYRTDDCQ--------------------PW-----VLPVVRKV 56 (412)
T ss_dssp CTTTTCCCCCCCHHHHHHHHHHTC--CCTTCEECCSCCCCCTTSC--------------------CC-----CCHHHHHH
T ss_pred chhhhCcccCCchHHHHHHHHhhc--CCCCceeeccceecCCCCC--------------------cc-----ccHHHHHH
Confidence 467788899999999888766543 4677999999987 42110 01 26788888
Q ss_pred HHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHHH--HHhcCCC-----CEEE
Q 041151 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTLN--CVIRGEG-----DGVV 159 (463)
Q Consensus 89 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~--~l~~~~g-----d~Vl 159 (463)
+.+.+... ...+.|++..|..+||+++++++...+|+.+++++|++ |+|+++++..++. .++ ++| |+|+
T Consensus 57 ~~~~~~~~-~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g~~~~~d~Vl 134 (412)
T 1ajs_A 57 EQRIANNS-SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW-YNGTNNKDTPVY 134 (412)
T ss_dssp HHHHHTCT-TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-SSSSSCCCSCEE
T ss_pred HHHhhhCh-hhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh-CcCcCCCCCeEE
Confidence 87776321 24568988899999999999999766666667899999 9999999999964 455 799 9999
Q ss_pred Ec-------------cCce-e---c---CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 160 LL-------------FHTT-W---K---RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 160 vp-------------~g~~-~---~---~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
++ .|++ + + .+++.+|+ +.|++.+++. ++++++|++++||||||.+++.+++++|++
T Consensus 135 ~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~ 210 (412)
T 1ajs_A 135 VSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDL-QGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIAS 210 (412)
T ss_dssp EEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECH-HHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHH
T ss_pred EcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCH-HHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHH
Confidence 97 6776 5 2 26788999 9999998752 125678888999999999999999999999
Q ss_pred HhhhCCeEEEecccccccccCCC-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh----
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDE-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK---- 294 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~---- 294 (463)
+|++||++||+||+|..+.+++. ....++..+.. ..+++|++.|+||.+ |++|+|+||+++...+++
T Consensus 211 ~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~ 282 (412)
T 1ajs_A 211 VMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVS-------EGFELFCAQSFSKNF-GLYNERVGNLTVVAKEPDSILR 282 (412)
T ss_dssp HHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHH-------TTCCEEEEEECTTTS-CCGGGCEEEEEEECSSHHHHHH
T ss_pred HHHHCCCEEEEEcccccccCCcccccchHHHHHhc-------cCCcEEEEEeccccc-CCCCcceEEEEEecCCHHHHHH
Confidence 99999999999999999876210 12223433321 123689999999999 888999999993111676
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCce
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGA 370 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~ 370 (463)
+++.+.+... ...+++.+.|.++..+|+.. ..+..+.++.++++++++++++++.+.|++++ ++.+..|+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 358 (412)
T 1ajs_A 283 VLSQMQKIVRVTWSNPPAQGARIVARTLSDP----ELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIG 358 (412)
T ss_dssp HHHHHHHHHHTTTSSCCSHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCS
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHcCc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCc
Confidence 4444555333 23446899999998888521 01112334566789999999999999999873 4888888999
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
+|+|++++ .+++..+++++||.+.|+ +||+++ .+++++++++++|++++++
T Consensus 359 ~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~l~~ 410 (412)
T 1ajs_A 359 MFSFTGLN-----------------PKQVEYLINQKHIYLLPS-----------GRINMCGLTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp SEEECCCC-----------------HHHHHHHHHTTCEECCTT-----------SEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred eEEEeCCC-----------------HHHHHHHHHhCCEEecCC-----------cEEEeeeCCHHHHHHHHHHHHHHHHh
Confidence 99995432 234667788899999873 599999 6899999999999998865
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=332.83 Aligned_cols=356 Identities=19% Similarity=0.246 Sum_probs=265.4
Q ss_pred hhhhhhhccc-hhhhhHHHHHHHHHH--hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 11 MNENVKKVQY-AVRGELYLRASELQK--EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
+++++.++++ +.+..+.....+... .++++|+|+.|+++. +. |+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~------------------------~~-----~~~v~~ 53 (400)
T 3asa_A 3 RNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQ------------------------PL-----NASVAE 53 (400)
T ss_dssp CCHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCC------------------------CC-----CHHHHH
T ss_pred cchhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCC------------------------CC-----CHHHHH
Confidence 5788888776 445666665555543 367799999998874 33 788899
Q ss_pred HHHHHhhhcCC--CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----
Q 041151 88 RAKHYLSLTSG--GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---- 161 (463)
Q Consensus 88 a~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---- 161 (463)
++.+++..... ...+|++..|..+||+++++++. +|+ +++++|++|+|+++++..++. ++ ++||+|+++
T Consensus 54 a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~~-~~-~~gd~Vl~~~p~y 128 (400)
T 3asa_A 54 AFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAKEIFISDGAKVDLFRLLS-FF-GPNQTVAIQDPSY 128 (400)
T ss_dssp HHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGGGEEEESCHHHHHHHHHH-HH-CSSCEEEEEESCC
T ss_pred HHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHHHEEEccChHHHHHHHHH-Hc-CCCCEEEECCCCc
Confidence 88887765311 24679888899999999999974 465 678999999999999998765 55 799999996
Q ss_pred ---------cCce-e---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 ---------FHTT-W---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 ---------~g~~-~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
.|.+ + +. ..+..|+ +.+ + ++++|++++||||||.+++.+++++|+++|+++|
T Consensus 129 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l-~~~-----~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~ 196 (400)
T 3asa_A 129 PAYLDIARLTGAKEIIALPCLQENAFFPEF-PED-----T------HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHE 196 (400)
T ss_dssp HHHHHHHHHTTCSEEEEEECCGGGTTCCCC-CTT-----C------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcceEecccchhcCcccCh-hhc-----c------CccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcC
Confidence 5655 4 22 2233444 321 2 7899999999999999999999999999999999
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCC-CceEEEEecCCcccCCCCCceeEEEEecCCChhH-------HH
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK-EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT-------VD 297 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~-------~~ 297 (463)
++||+||+|.++.++ +..+.++..+ +. .+++|+++||||+| |++|+|+||++ +++++ ++
T Consensus 197 ~~li~De~~~~~~~~-~~~~~~~~~~--------~~~~~~~i~~~s~sK~~-g~~GlriG~~~---~~~~~~~~~~~~~~ 263 (400)
T 3asa_A 197 ILILFDAAYSTFISD-PSLPKSIFEI--------PDARFCAIEINSFSKPL-GFAGIRLGWTV---IPQELTYADGHFVI 263 (400)
T ss_dssp CEEEEECTTGGGCCC-TTSCSSGGGS--------TTGGGTEEEEEECCGGG-TTTTCCCEEEE---CCTTCBCTTSCBHH
T ss_pred CEEEEEchhhhhhcC-CCCCCchhhC--------CCCCCceEEEecchhhc-CCcchheeEEe---eChhhccchhhhHH
Confidence 999999999987763 3222344332 21 24689999999999 89999999998 47777 66
Q ss_pred HHHhhh-hh-cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 298 EIYKIA-SI-ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 298 ~l~~~~-~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
.+.... .. ..+++.+.|.++..+|+. . +.+++++.++++++.+.+.|++. |+.+..+.+++|+|+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~----------~--~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~ 330 (400)
T 3asa_A 264 QDWERFLSTTFNGASIPAQEAGVAGLSI----------L--PQLEAIHYYRENSDLLRKALLAT-GFEVFGGEHAPYLWV 330 (400)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHHH----------T--TTCHHHHHHHHHHHHHHHHHHHT-TCEEEECSSSSEEEE
T ss_pred HHHHHHhccCccCCChHHHHHHHHHhCc----------H--HHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCCCceEEEE
Confidence 664432 22 346899999998888741 1 34457788999999999999988 888888888899996
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
++ +|.+. ++.+++..+++++||.+.||+.|+. .+.+++||++..+++++++++++|++++++.
T Consensus 331 ~~-~~~~~----------~~~~~~~~l~~~~gv~v~~g~~f~~-~~~~~iRis~~~~~e~i~~~l~~l~~~~~~~ 393 (400)
T 3asa_A 331 KP-TQANI----------SDRDLFDFFLREYHIAITPGIGFGR-SGSGFVRFSSLGKREDILAACERLQMAPALQ 393 (400)
T ss_dssp EC-CCTTC----------CTTTHHHHHHHHHSEECEEGGGGCG-GGTTCEEEECCSCHHHHHHHHHHHHC-----
T ss_pred ec-cCCCC----------CHHHHHHHHHHhCCEEEeChhHhCC-CCCCEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 61 33221 2335566677778999999999874 2456899997788899999999999887654
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=329.77 Aligned_cols=366 Identities=13% Similarity=0.091 Sum_probs=273.5
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
|+.++...++++++.+...+.+. .++++|||+.|.| +..+. .+ .++.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~d~~~~--------------------~~-----~~~~v~~a~ 56 (412)
T 1yaa_A 4 LFNNIELLPPDALFGIKQRYGQD--QRATKVDLGIGAYRDDNGK--------------------PW-----VLPSVKAAE 56 (412)
T ss_dssp TTTTCCCCCCCTTHHHHHHHHTC--CCSSCEECSSCCCBCTTSC--------------------BC-----CCHHHHHHH
T ss_pred hhccCcccCCCcHHHHHHHHhcC--CCCCeEEEeeeeeeCCCCC--------------------CC-----CcHHHHHHH
Confidence 67888888888888777655433 4677999999987 32110 01 278888888
Q ss_pred HH-HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHH--HHHhcCCCCEEEEc---
Q 041151 90 KH-YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTL--NCVIRGEGDGVVLL--- 161 (463)
Q Consensus 90 ~~-~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~--~~l~~~~gd~Vlvp--- 161 (463)
.+ .+.. ...++|++..|..++|+++++++...+|+.+++++|++ |+|+++++..++ ..++ ++||+|+++
T Consensus 57 ~~~~~~~--~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~-~~gd~Vl~~~p~ 133 (412)
T 1yaa_A 57 KLIHNDS--SYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLSKPT 133 (412)
T ss_dssp HHHHTCT--TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESC
T ss_pred HhhhcCc--ccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence 88 7753 24568988899999999999999766676677899999 999999999984 4445 699999997
Q ss_pred ----------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 162 ----------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 ----------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
.|.++ +. +++++|+ +.|++.+++. .+.+.++++++||||||.+++.+++++|+++|+++|
T Consensus 134 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~ 209 (412)
T 1yaa_A 134 WANHMAIFENQGLKTATYPYWANETKSLDL-NGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKN 209 (412)
T ss_dssp CTTHHHHHHTTTCCEEEEECEETTTTEECH-HHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHcCceEEEEeeecCCCCccCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 55555 22 3688999 9999999761 001344445899999999999999999999999999
Q ss_pred eEEEecccccccccCCC-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE-ecCC-----Chh----
Q 041151 226 LVLLGDEVYQQNIYQDE-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE-MTNI-----PPK---- 294 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~-~~~~-----~~~---- 294 (463)
++||+||+|..+.+++. ....++..+.... ++..++|+++|+||.+ |++|+|+||++ + + +++
T Consensus 210 ~~li~De~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~s~sK~~-~~~GlriG~~~~~--~~~~~~~~~~~~~ 282 (412)
T 1yaa_A 210 HIALFDTAYQGFATGDLDKDAYAVRLGVEKL----STVSPVFVCQSFAKNA-GMYGERVGCFHLA--LTKQAQNKTIKPA 282 (412)
T ss_dssp CEEEEEESCTTTSSSCHHHHTHHHHHHHHHT----TTTCCEEEEEECTTTS-CCGGGCEEEEEEE--CCSCTTHHHHHHH
T ss_pred CEEEEecccccccCCcccchhHHHHHHHhcC----CCCcceEEEeccCCCC-CCcCCcceEEEEE--ecCCCCCHHHHHH
Confidence 99999999998877310 0122333332111 1001689999999999 88899999997 3 2 455
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCce
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGA 370 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~ 370 (463)
+++.+..... ...+++.+.|.++..+|+.. ...+.+.++.++++++++++++++.+.|++++ ++.+..|+++
T Consensus 283 l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~ 358 (412)
T 1yaa_A 283 VTSQLAKIIRSEVSNPPAYGAKIVAKLLETP----ELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCG 358 (412)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCS
T ss_pred HHHHHHHHHhhccCCCChHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCce
Confidence 7777776443 34566899999999888521 11112344567789999999999999999873 4888889999
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
+|+|++++ .. .+..+++++||.+.| ++|||++ .+++++++++++|+++++.
T Consensus 359 ~~~~~~~~----------------~~-~~~~~l~~~gi~v~~-----------~~Ris~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 359 MFSFTGLT----------------PQ-MVKRLEETHAVYLVA-----------SGRASIAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp SEEECCCC----------------HH-HHHHHHHHHCEECCT-----------TSEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred EEEeeCCC----------------HH-HHHHHHHhCCEEecc-----------CcEEEEccCCHhHHHHHHHHHHHHHHh
Confidence 99995432 22 346778889999987 3699999 5899999999999988753
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=319.24 Aligned_cols=318 Identities=17% Similarity=0.163 Sum_probs=257.5
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
+++++|||+.|.+.+ +. |+.+++++.+.+.. ...|+. .+..++|++
T Consensus 14 ~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~----~~~y~~-~~~~~l~~~ 59 (354)
T 3ly1_A 14 STDNPIRINFNENPL------------------------GM-----SPKAQAAARDAVVK----ANRYAK-NEILMLGNK 59 (354)
T ss_dssp CSSSCEECSSCCCSS------------------------CC-----CHHHHHHHHHTGGG----TTSCCH-HHHHHHHHH
T ss_pred CCCceEEccCCCCCC------------------------CC-----CHHHHHHHHHHHhh----CcCCCC-CchHHHHHH
Confidence 467899999998775 44 88999999887764 357754 478999999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c-CCCcccChHHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K-RQQIGVLIIND 178 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~-~~~~~~d~~~~ 178 (463)
++++++ +++++|++|+|+++++..++.+++ ++||+|+++ .|.++ + ..++++|+ +.
T Consensus 60 la~~~~------~~~~~i~~~~g~~~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~ 131 (354)
T 3ly1_A 60 LAAHHQ------VEAPSILLTAGSSEGIRAAIEAYA-SLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDI-EG 131 (354)
T ss_dssp HHHHTT------SCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCH-HH
T ss_pred HHHHhC------CChHHEEEeCChHHHHHHHHHHHh-CCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCH-HH
Confidence 999985 778999999999999999999997 899999997 56665 3 33689999 99
Q ss_pred HHHHHH--HHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 179 LQQSVA--QARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 179 l~~~l~--~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
|++.++ + ++++|++++||||||.+++.+++.+|+++| ++|+++|+||+|..+.++ +... +.....
T Consensus 132 l~~~l~~~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~-~~~~-~~~~~~---- 198 (354)
T 3ly1_A 132 LKAAVAAYS------GPSIVYLVNPNNPTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVND-PRFR-SISPMI---- 198 (354)
T ss_dssp HHHHHHTCS------SCEEEEEESSCTTTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCC-TTCC-CSHHHH----
T ss_pred HHHHhccCC------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhccc-cccC-CHHHHh----
Confidence 999998 5 899999999999999999999999999999 899999999999998773 3322 333322
Q ss_pred CCCCCC-ceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 257 LPFSKE-VQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 257 ~~~~~~-~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
+.. +++++++|+||++ |++|+|+||++ +++++++.+..... .++++.+.|.++..+++. .
T Consensus 199 ---~~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~-----------~ 259 (354)
T 3ly1_A 199 ---TQGAENIILLKTFSKIH-AMAGMRVGYAV---AHPTVIALMGRYVA-GEKINFSGVDAALASMND-----------S 259 (354)
T ss_dssp ---HTTCSSEEEEEESSSTT-CCGGGCCEEEE---CCHHHHHHHGGGTT-CSCCCHHHHHHHHHHTTC-----------H
T ss_pred ---hhcCCCEEEEeeChhhc-cChhhhheeee---cCHHHHHHHHHhcC-CCCCCHHHHHHHHHHhcC-----------H
Confidence 222 4789999999999 99999999999 58999999988776 478899999999999862 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 415 (463)
.+.++.+++++++++.+.+.|+++ |+.+.++.| .|+|++++ . +..++. ..|.++||.+. |..
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~-~~~~~~~~--~------------~~~~~~-~~l~~~gi~v~-g~~ 321 (354)
T 3ly1_A 260 AFITYSKKSNDVSRQILLKALEDL-KLPYLPSEG-NFVFHQLV--V------------PLKDYQ-THMADAGVLIG-RAF 321 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCCS-SEEEEECS--S------------CHHHHH-HHHHHTTEECC-CCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCeECCCCc-eEEEEECC--C------------CHHHHH-HHHHHCCEEEe-ecC
Confidence 445667888999999999999988 888776554 55785543 1 134444 45667899999 765
Q ss_pred CCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 416 f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
++ ..+++||+++ +++++++++++|++++++
T Consensus 322 ~~---~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 322 PP---ADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp TT---CTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred CC---CCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 54 3458999998 568999999999988754
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=321.17 Aligned_cols=340 Identities=17% Similarity=0.154 Sum_probs=262.8
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+++++..+.++..+.......+. -..+++|||+.|.+.+ +. |+.+.+++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~ 55 (363)
T 3ffh_A 6 WKKSLAGLSSYKPGKREEEVMAE-LGLTKITKLSSNENPL------------------------GT-----SKKVAAIQA 55 (363)
T ss_dssp CCGGGTTCCC----CHHHHHHHT-TTCSCCEECSSCSCTT------------------------CC-----CHHHHHHHH
T ss_pred hhHHHHhCCCCCCCCCHHHHHHh-cCCCceEEccCCCCCC------------------------CC-----CHHHHHHHH
Confidence 56677777766554333222111 1235799999998775 43 888888888
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+.+.. ...|+. .+..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 56 ~~~~~----~~~y~~-~~~~~lr~~la~~~~------~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~ 123 (363)
T 3ffh_A 56 NSSVE----TEIYPD-GWASSLRKEVADFYQ------LEEEELIFTAGVDELIELLTRVLL-DTTTNTVMATPTFVQYRQ 123 (363)
T ss_dssp TCBSC----CCBC-----CHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHC-STTCEEEEEESSCHHHHH
T ss_pred HHHHH----hhcCCC-cchHHHHHHHHHHhC------CChhhEEEeCCHHHHHHHHHHHHc-cCCCEEEEcCCChHHHHH
Confidence 76543 456754 578999999999996 778999999999999999999997 899999997
Q ss_pred ----cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 162 ----FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 162 ----~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
.|.++ + ..++.+|+ +.|++++++ ++++|++++||||||.+++.+++.+|++.|++ |+++|+||+
T Consensus 124 ~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~-~~~li~De~ 195 (363)
T 3ffh_A 124 NALIEGAEVREIPLLQDGEHDL-EGMLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPS-DVLVVLDEA 195 (363)
T ss_dssp HHHHHTCEEEEEECCTTSCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT-TSEEEEECT
T ss_pred HHHHcCCEEEEecCCCCCCcCH-HHHHHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC-CcEEEEeCc
Confidence 56665 3 33788999 999999876 89999999999999999999999999998888 999999999
Q ss_pred ccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHH
Q 041151 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPA 313 (463)
Q Consensus 234 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 313 (463)
|+++.+ +. .. +.... . ...+++|+++|+||.+ |++|+|+||+++ ++++++.+..... .++++.+.
T Consensus 196 ~~~~~~-~~-~~-~~~~~---~----~~~~~~i~~~s~sK~~-g~~G~r~G~~~~---~~~~~~~l~~~~~-~~~~~~~~ 260 (363)
T 3ffh_A 196 YIEYVT-PQ-PE-KHEKL---V----RTYKNLIITRTFSKIY-GLASARVGYGIA---DKEIIRQLNIVRP-PFNTTSIG 260 (363)
T ss_dssp TGGGCS-SC-CC-CCGGG---G----GTCTTEEEEEESSSTT-CCSSCCCEEEEE---CHHHHHHHHHTCC-SCCCBHHH
T ss_pred hHhhcC-cc-cc-CHHHH---h----hcCCCEEEEeechhhh-cCchhceeeeec---CHHHHHHHHHhCC-CCCCCHHH
Confidence 998766 22 11 22121 1 3345789999999999 899999999994 8999999988776 67889999
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCC
Q 041151 314 QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV 393 (463)
Q Consensus 314 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 393 (463)
|.++..+++. ..+.++.+++++++++.+.+.|++++|+.+.++.+ .|+|++++ .
T Consensus 261 ~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~-~~~~~~~~--~------------ 314 (363)
T 3ffh_A 261 QKLAIEAIKD-----------QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANG-NFVLIDLG--I------------ 314 (363)
T ss_dssp HHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCS-SEEEEECS--S------------
T ss_pred HHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCC-eEEEEECC--C------------
Confidence 9999988752 24456678889999999999999966988876655 55775543 1
Q ss_pred ChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 394 PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 394 ~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
+..++. +.|.++||.+.+|..|+. .+++||+++ +++++++++++|+++
T Consensus 315 ~~~~~~-~~l~~~gi~v~~g~~~~~---~~~iRis~~-~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 315 EAGTIF-SYLEKNGYITRSGAALGF---PTAVRITIG-KEEDNSAVIALLEKL 362 (363)
T ss_dssp CHHHHH-HHHHHTTEECEETTTTTC---TTEEEEECC-CHHHHHHHHHHHHHH
T ss_pred CHHHHH-HHHHHCCeEEEeCccCCC---CCeEEEECC-CHHHHHHHHHHHHHh
Confidence 134444 455678999999999976 348999999 678999999999875
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=330.19 Aligned_cols=362 Identities=13% Similarity=0.095 Sum_probs=268.6
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhccc-ceeccCCCC-cCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKK-IIFTNVGNP-HALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
++..++...++++ +....+++++++.+ +|||+.|.| +..+. + .+.+.+.+
T Consensus 23 ~~~~~~~~~~~~~---i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~---------------------~----~v~~av~~ 74 (448)
T 3meb_A 23 SVFSGFPASPPDA---ILNLTVLYNADTNPKKVNLGVGAYRDESGK---------------------P----WILPAVKE 74 (448)
T ss_dssp CTTTTCCCCCCCT---THHHHHHHHHCCCTTCEEESSCCCCCTTSC---------------------C----CCCHHHHH
T ss_pred hHHhcCCCCCCCh---HHHHHHHHHhCCCCCeEEeecccccCCCCC---------------------E----echHHHHH
Confidence 4555665556654 44555666767655 799999998 64111 1 12456666
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC---CCCCcEEE--cCCcHHHHHH--HHHHHhcCCCCEEEE
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP---SDPELIFL--TDGASKGVMQ--TLNCVIRGEGDGVVL 160 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~---~~~~~i~~--t~G~~~al~~--~~~~l~~~~gd~Vlv 160 (463)
++.+...........|.+..|.+++|+++++++. |.. +++++|++ |+|+++++.+ .+..++ ++||+|++
T Consensus 75 a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~---g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~-~~gd~Vlv 150 (448)
T 3meb_A 75 AEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMF---GKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLW-MPKAEFYM 150 (448)
T ss_dssp HHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHH---CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTTCCEEE
T ss_pred HHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhc---CCCccccCcCcEEEEECCcHHHHHHHHHHHHHHh-CCCCEEEE
Confidence 6555441111245789999999999999999983 433 23689999 9999999988 556676 89999999
Q ss_pred c-----------c------Ccee---c--CC--CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 161 L-----------F------HTTW---K--RQ--QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 161 p-----------~------g~~~---~--~~--~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
+ . |.++ + +. ++.+|+ +.|++.+++. ..+++++++++||||||.+++.+++++
T Consensus 151 ~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~-e~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~ 226 (448)
T 3meb_A 151 PSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDF-SNTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKE 226 (448)
T ss_dssp ESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCH-HHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred CCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCH-HHHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHH
Confidence 6 2 3333 2 22 488999 9999999851 015778888899999999999999999
Q ss_pred HHHHhhhCCeEEEecccccccccCCC-CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE--EecCC--
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDE-RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF--EMTNI-- 291 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~--~~~~~-- 291 (463)
|+++|+++|+++|+||+|..+.+++. ....++..+. + ...++|++.||||.| |++|+|+||+ + .
T Consensus 227 i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~-~------~~~~~i~~~S~SK~~-g~~G~RiG~l~~v---~~~ 295 (448)
T 3meb_A 227 LLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFV-D------AGVEVLVAQSFSKNF-GLYGERIGCLHVV---HAG 295 (448)
T ss_dssp HHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHH-H------TTCCEEEEEECTTTS-CCGGGCCEEEEEE---CCC
T ss_pred HHHHHHHCCCEEEEecccccccCCCcccCchhHHHHh-h------cCCcEEEEecccccC-CCccccceeeeee---ecc
Confidence 99999999999999999999877310 1112233221 1 223689999999999 9999999998 5 3
Q ss_pred -------Ch----hHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 292 -------PP----KTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 292 -------~~----~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
++ ++++.+.+... ...+++.+.|.++..+|+.. .....+.+++++++++++++++++.+.|+++
T Consensus 296 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~----~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 371 (448)
T 3meb_A 296 VEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDK----RLLQMFYDNVKEMSARIHRMRSLLHASLAKR 371 (448)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34 56666666543 45678899999999998631 1223444567788999999999999999886
Q ss_pred --CC------cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 360 --RN------VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 360 --pg------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
++ +.+..|++++|+|++++ .+++..+++++||.+.||+ .|||++
T Consensus 372 ~~~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~ll~~~gV~v~~G~----------gRis~a~ 424 (448)
T 3meb_A 372 KTPGPGSKGTWDHILTAIGMFTFTGLT-----------------PEHVDYLKEKWSIYLVKAG----------GRMSMCG 424 (448)
T ss_dssp TCCCSTTTCCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEEECSGG----------GEEEGGG
T ss_pred CCCCcCcccccceeCCCceEEEecCCC-----------------HHHHHHHHHhCCEEEeCCC----------cEEEEec
Confidence 66 77788899999995443 3456777889999999975 199999
Q ss_pred CCcCcHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++++++++++|++++++
T Consensus 425 ~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 425 LTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp CCTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 5889999999999999874
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=344.74 Aligned_cols=338 Identities=19% Similarity=0.231 Sum_probs=254.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC-CCCCCHHHHHHHHHHHHHh-cC-CCCC-CCcEEEcCCcHHHHHHHHHH-----Hhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS-DSRGIPGVRKEVAEFIERR-DG-YPSD-PELIFLTDGASKGVMQTLNC-----VIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~-~g-~~~~-~~~i~~t~G~~~al~~~~~~-----l~~ 152 (463)
|+.+++++.+.+.. ..|+ +..|.+++|+++++++.++ ++ +.++ +++|++|+|+++++..++.+ ++
T Consensus 117 ~~~~v~a~~~~~~~-----~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~- 190 (533)
T 3f6t_A 117 RDKVVAEWVNGAVA-----NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL- 190 (533)
T ss_dssp HHHHHHHHHHHHHT-----CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSS-
T ss_pred CcHHHHHHHHHHHh-----CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcc-
Confidence 67777777776664 2454 7789999999999999766 35 5665 46999999999999999998 66
Q ss_pred CCCCEEEEc-------------cCcee---c-----CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 153 GEGDGVVLL-------------FHTTW---K-----RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 153 ~~gd~Vlvp-------------~g~~~---~-----~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
++||+|+++ .|..+ + ..++++|+ +.|++++++ ++++|++++||||||.+++.
T Consensus 191 ~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~-~~l~~~l~~------~~k~v~l~~p~NPtG~~~~~ 263 (533)
T 3f6t_A 191 KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEP-NEIEKLKDP------SIKALIVVNPTNPTSKEFDT 263 (533)
T ss_dssp CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECH-HHHHHHSCT------TEEEEEEESSCTTTCBCCCH
T ss_pred CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCH-HHHHHHhCC------CCeEEEEeCCCCCCccccCH
Confidence 899999997 34443 1 45689999 999999876 89999999999999999999
Q ss_pred HHHHHHHHHhh-hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 212 ANLREILRFCY-QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 212 ~~l~~l~~~a~-~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
+++++|+++|+ +|+++||+||+|..+.+ + ..++... . .+++|+++||||.+ |++|+|+||+++
T Consensus 264 ~~l~~l~~la~~~~~~~li~De~y~~~~~-~---~~~~~~~--------~-~~~~i~~~S~SK~~-g~~G~RiG~l~~-- 327 (533)
T 3f6t_A 264 NALNAIKQAVEKNPKLMIISDEVYGAFVP-N---FKSIYSV--------V-PYNTMLVYSYSKLF-GCTGWRLGVIAL-- 327 (533)
T ss_dssp HHHHHHHHHHHHCTTCEEEEECTTGGGST-T---CCCHHHH--------S-GGGEEEEEESHHHH-TCGGGCEEEEEE--
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCcccccc-C---ccCHhhc--------C-CCCEEEEecCcccC-CCcccceEEEEE--
Confidence 99999999999 68999999999998766 2 2344443 2 24789999999999 899999999996
Q ss_pred CChh-HHHHH------------------------------------Hhhhh-hcccCChHHHHHH----HHhcCCCCCCC
Q 041151 291 IPPK-TVDEI------------------------------------YKIAS-IALSPNVPAQIFM----GLMVNPLKPGD 328 (463)
Q Consensus 291 ~~~~-~~~~l------------------------------------~~~~~-~~~~~~~~~q~~~----~~~l~~~~~~~ 328 (463)
+++ +++.+ .+... ...+++.+.|.++ ..+|.... ++
T Consensus 328 -~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~-g~ 405 (533)
T 3f6t_A 328 -NEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTST-NG 405 (533)
T ss_dssp -ESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCB-GG
T ss_pred -CcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhc-cc
Confidence 443 32222 22232 4567788888883 34442000 00
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc----CCCChHHHHHHHHH
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA----GKVPDVFYCLRLLE 404 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~ 404 (463)
+. ..++.+++++.|+++++.+.+.|. + ++.+..|++++|+|+++...........+. ...++.+++..+++
T Consensus 406 ~~---~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~ 480 (533)
T 3f6t_A 406 GS---DDPYIDIARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAE 480 (533)
T ss_dssp GT---BCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cc---hHHHHHHHHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHH
Confidence 01 123455678899999999999998 6 788888999999997764100000000000 00135677788888
Q ss_pred hcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHHhccc
Q 041151 405 ATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQYEDY 457 (463)
Q Consensus 405 ~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~~~~~ 457 (463)
++||.+.||+.|+.+ .+++|||++ .+++++++++++|+++++++.++|+..
T Consensus 481 ~~GV~v~pg~~f~~~--~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~~~~~~ 532 (533)
T 3f6t_A 481 KNGVVLVDGVGFGAK--PGELRVSQANLPTEDYALIGKQVLELLKEYYEEFKQN 532 (533)
T ss_dssp HTTSSSCTTEEECSS--TTEEEEESSSSCHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hCCEEEeCCcccCCC--CCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999873 459999999 789999999999999999999999864
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=322.77 Aligned_cols=307 Identities=21% Similarity=0.251 Sum_probs=253.7
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL----- 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----- 161 (463)
+++.+.+.. ....|++..|..+||+++++++. .+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 46 ~~~~~~~~~---~~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~ 116 (375)
T 3op7_A 46 EDFYKKLQG---TKLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLI-EPGDHVISLYPTYQ 116 (375)
T ss_dssp HHHHHHHHT---SCCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESSCT
T ss_pred HHHHHHHhc---CCcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCch
Confidence 344455554 45789999999999999999873 2678999999999999999999998 999999997
Q ss_pred --------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 162 --------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 162 --------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
.|.++ ...++.+|+ +.|++++++ ++++|++++||||||.+++.+++++|+++|++||++
T Consensus 117 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~ 189 (375)
T 3op7_A 117 QLYDIPKSLGAEVDLWQIEEENGWLPDL-EKLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAY 189 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGTTEECH-HHHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCE
T ss_pred hHHHHHHHcCCEEEEEeccccCCCCCCH-HHHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 55555 244677899 999999986 899999999999999999999999999999999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hc
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IA 306 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~ 306 (463)
||+||+|+.+.++ +..++... . +++++++||||++ |++|+|+||++ +++++++.+.+... ..
T Consensus 190 li~De~~~~~~~~---~~~~~~~~--------~--~~~i~~~s~sK~~-~~~G~r~G~v~---~~~~l~~~~~~~~~~~~ 252 (375)
T 3op7_A 190 ILSDEVYRSFSEL---DVPSIIEV--------Y--DKGIAVNSLSKTY-SLPGIRIGWVA---ANHQVTDILRDYRDYTM 252 (375)
T ss_dssp EEEECCSCCCSSS---CCCCHHHH--------C--TTEEEEEESSSSS-SCGGGCCEEEE---CCHHHHHHHTTTGGGTT
T ss_pred EEEEccccccccc---CCCchhhh--------c--CCEEEEeEChhhc-CCcccceEEEE---eCHHHHHHHHHHHhhhc
Confidence 9999999998762 33344332 2 3579999999999 89999999999 59999999988775 56
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHH
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEA 386 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~ 386 (463)
.+++.+.|.++..+++ ....+.++.++.++++++.+.+.|++.|++.+..+.++++.|+.++.+.
T Consensus 253 ~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 317 (375)
T 3op7_A 253 ICAGVFDDLVAQLALA----------HYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM----- 317 (375)
T ss_dssp SCCCHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS-----
T ss_pred cCCCcHHHHHHHHHHh----------ccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC-----
Confidence 7778899988888764 1233455678888999999999999988999888999999987776432
Q ss_pred HhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 387 AKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+..+++..+++++||.+.||..|+. .+++||+++.+.+++++++++|+++++++.
T Consensus 318 -------~~~~~~~~ll~~~gi~v~~g~~~~~---~~~iRi~~~~~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 318 -------PMEDFCLQLLQEHGVLLVPGNRFER---DGYVRLGFACEQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp -------CHHHHHHHHHHHHCEECEEGGGGTC---TTEEEECCCSCHHHHHHHHHHHHHHHGGGC
T ss_pred -------CHHHHHHHHHHhCCEEEeChhhhCC---CCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 2566677777899999999999875 348999999766899999999999987654
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=324.92 Aligned_cols=362 Identities=13% Similarity=0.088 Sum_probs=256.2
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHY 92 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~ 92 (463)
.++...+++.++.+...+.+. .++++|||+.|.+... . .+.+. ++.+.+++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~------------------~-~~~~~-----~~~v~~a~~~~ 56 (396)
T 2q7w_A 3 ENITAAPADPILGLADLFRAD--ERPGKINLGIGVYKDE------------------T-GKTPV-----LTSVKKAEQYL 56 (396)
T ss_dssp TTCCCCCC-------------------CEESSCCSCCCT------------------T-SCCCC-----CHHHHHHHHHH
T ss_pred cccccCCCchHHHHHHHHhcc--CCCCceecccccccCC------------------C-CCccC-----cHHHHHHHHhh
Confidence 456677788777776655443 3467899999984210 0 00122 68888888877
Q ss_pred hhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHHHHHh-cCCCCEEEEc--------
Q 041151 93 LSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTLNCVI-RGEGDGVVLL-------- 161 (463)
Q Consensus 93 ~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~-~~~gd~Vlvp-------- 161 (463)
+... ..++|++..|..+||+++++++...++.++++++|++ |+|+++++..++..+. ..+||+|+++
T Consensus 57 ~~~~--~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~ 134 (396)
T 2q7w_A 57 LENE--TTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHK 134 (396)
T ss_dssp HHHC--CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHH
T ss_pred cCcc--cccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHH
Confidence 6652 4568988899999999999999655444456889998 9999999999997663 1699999997
Q ss_pred -----cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ +. +++++|+ +.|++.+++. .++++++++++||||||.+++.+++++|+++|+++|++||+
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~ 210 (396)
T 2q7w_A 135 SVFNSAGLEVREYAYYDAENHTLDF-DALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLF 210 (396)
T ss_dssp HHHHHTTCEEEEEECEETTTTEECH-HHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHcCCceEEEecccCCCCCcCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 56655 32 6788999 9999998741 11367888899999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh----hHHHHHHhhhh-h
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP----KTVDEIYKIAS-I 305 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~----~~~~~l~~~~~-~ 305 (463)
||+|..+.+++.....++..+... .+++|+++|+||++ |++|+|+||+++...++ ++++.+..... .
T Consensus 211 De~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (396)
T 2q7w_A 211 DFAYQGFARGLEEDAEGLRAFAAM-------HKELIVASSYSXNF-GLYNERVGACTLVAADSETVDRAFSQMKAAIRAN 282 (396)
T ss_dssp EESCTTSSSCHHHHTHHHHHHHHH-------CSCEEEEEECTTTT-TCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred ecccccccCCccchhHHHHHHHhc-------CCcEEEEEeccccc-cccccccceEEEEcCCHHHHHHHHHHHHHHHhhc
Confidence 999999876210122234333211 23689999999999 89999999998300144 45555554433 2
Q ss_pred cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEEeeeccCChh
Q 041151 306 ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYSFPQIRLPPK 382 (463)
Q Consensus 306 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~~~~~~~~~~ 382 (463)
..+++.+.|.++..+|+.. .....+.++.+++++.++++++.+.+.|+++. ++.+..|++++|+|++++
T Consensus 283 ~~~~~~~~~~a~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---- 354 (396)
T 2q7w_A 283 YSNPPAHGASVVATILSND----ALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT---- 354 (396)
T ss_dssp TSSCCHHHHHHHHHHHTSH----HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----
T ss_pred cCCCCcHHHHHHHHHhcCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC----
Confidence 3455899999999988631 01112334566788899999999999999873 388888899999995432
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKF 446 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~ 446 (463)
. +.+..+++++||.+.|| +||+++ .+++++++++++|+++
T Consensus 355 ------------~-~~~~~~l~~~gv~v~~~-----------~Ris~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 355 ------------K-EQVLRLREEFGVYAVAS-----------GRVNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp ------------H-HHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred ------------H-HHHHHHHHhcCeeecCC-----------ceEEEeecCHHHHHHHHHHHHhc
Confidence 2 34667788899999873 699999 5889999999999875
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=316.28 Aligned_cols=318 Identities=17% Similarity=0.188 Sum_probs=257.4
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV 116 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i 116 (463)
.+++|+|+.|.+.+ +. |+.+++++.+.+... ....|++ .+..++|+++
T Consensus 29 ~~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~~--~~~~y~~-~~~~~l~~~l 76 (367)
T 3euc_A 29 SHGLVKLDAMENPY------------------------RL-----PPALRSELAARLGEV--ALNRYPV-PSSEALRAKL 76 (367)
T ss_dssp CTTCEECCSSCCCC------------------------CC-----CHHHHHHHHHHHHHH--HTTCSCC-CCHHHHHHHH
T ss_pred CCCeeEccCCCCCC------------------------CC-----CHHHHHHHHHHhhhh--hhhcCCC-CcHHHHHHHH
Confidence 35689999998775 44 889999998887742 3467876 4789999999
Q ss_pred HHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccChHHH
Q 041151 117 AEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLIIND 178 (463)
Q Consensus 117 a~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~ 178 (463)
+++++ + ++++|++|+|+++++..++.+++ ++||+|+++ .|.++ ...++.+|+ +.
T Consensus 77 a~~~g------~~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~ 148 (367)
T 3euc_A 77 KEVMQ------VPAGMEVLLGNGSDEIISMLALAAA-RPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDR-GA 148 (367)
T ss_dssp HHHHT------CCTTCEEEEEEHHHHHHHHHHHHTC-CTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCH-HH
T ss_pred HHHhC------CCCcceEEEcCCHHHHHHHHHHHHc-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCH-HH
Confidence 99985 4 67899999999999999999997 899999997 55555 334678999 99
Q ss_pred HHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC--CeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE--NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 179 l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
|++++++. ++++|++++||||||.+++.+++++|+++|++| |+++|+||+|..+.. . ..... +
T Consensus 149 l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~-~--~~~~~------~- 213 (367)
T 3euc_A 149 MLAAMAEH-----QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ-E--SWMSR------L- 213 (367)
T ss_dssp HHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSS-C--CSGGG------G-
T ss_pred HHHHhhcc-----CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcc-c--chHHH------H-
Confidence 99999875 799999999999999999999999999999999 999999999998653 1 11111 1
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
+..++++++.|+||+ +++|+|+||++ +++++++.+.+... .++.+.+.|.++..+++. ..
T Consensus 214 ---~~~~~~i~~~s~sK~--~~~G~r~G~~~---~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~-----------~~ 273 (367)
T 3euc_A 214 ---TDFGNLLVMRTVSKL--GLAGIRLGYVA---GDPQWLEQLDKVRP-PYNVNVLTEATALFALEH-----------VA 273 (367)
T ss_dssp ---GTCTTEEEEEECCCT--TSCSCCEEEEE---ECHHHHHHHGGGCC-SSCCCHHHHHHHHHHHTT-----------HH
T ss_pred ---hhCCCEEEEecchhh--cccccCceeee---eCHHHHHHHHHhCC-CCCCCHHHHHHHHHHhcC-----------HH
Confidence 334578999999997 67999999999 48889988877765 577899999999999862 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
+.++.+++++++++.+.+.|+++||+.+. +.+++|+|++++ . ..++ ...|.++||.+++|..|
T Consensus 274 ~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~--~-------------~~~l-~~~l~~~gi~v~~~~~~ 336 (367)
T 3euc_A 274 VLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP--D-------------AAQT-FDRLLARKVLIKNVSKM 336 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--C-------------HHHH-HHHHHTTTEECEECGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--C-------------HHHH-HHHHHHCCeEEEECCcc
Confidence 45567888999999999999999899855 455667785543 1 3344 44578899999999988
Q ss_pred CCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 417 ~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+. ...+++||+++ +++++++++++|+++++
T Consensus 337 ~~-~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 337 HP-LLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp CG-GGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred CC-CCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 64 34569999998 67899999999988753
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=347.37 Aligned_cols=337 Identities=14% Similarity=0.175 Sum_probs=267.7
Q ss_pred cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHH
Q 041151 39 KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE 118 (463)
Q Consensus 39 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 118 (463)
+++||+.|+|++ +. |+.+.+++.+++.. ....|++. ..++|+++++
T Consensus 32 ~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~---~~~~y~~~--~~~l~~~la~ 77 (392)
T 3b1d_A 32 QLLPAWIADMDF------------------------EV-----MPEVKQAIHDYAEQ---LVYGYTYA--SDELLQAVLD 77 (392)
Confidence 799999999875 33 77888888887754 34678765 7899999999
Q ss_pred HHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC---C-CcccChHHH
Q 041151 119 FIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR---Q-QIGVLIIND 178 (463)
Q Consensus 119 ~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~---~-~~~~d~~~~ 178 (463)
++.+.+|+++++++|++|+|+++++..++.+++ ++||+|+++ .|.++ +. + .|.+|+ +.
T Consensus 78 ~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~-~~ 155 (392)
T 3b1d_A 78 WEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT-KEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDF-EQ 155 (392)
Confidence 998888888889999999999999999999997 899999997 34444 22 1 355899 99
Q ss_pred HHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCC
Q 041151 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLP 258 (463)
Q Consensus 179 l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
|++.+++. ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+.++ +....++..+.+++
T Consensus 156 l~~~l~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~-g~~~~~~~~~~~~~--- 226 (392)
T 3b1d_A 156 LENDIVEN-----DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF-GHEHVSFNTVSPDF--- 226 (392)
Confidence 99998732 7899999999999999999999999999999999999999999998873 33344444432111
Q ss_pred CCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hc-ccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 259 FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 259 ~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
.+++++++||||++ |++|+|+||+++ .++++++.+.+... .+ .+++.+.|.++.++|+.. ..
T Consensus 227 ---~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----------~~ 290 (392)
T 3b1d_A 227 ---KDFALVLSSATKTF-NIAGTKNSYAII--ENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG----------KP 290 (392)
Confidence 35789999999999 899999999994 23458888877765 22 356888999888887521 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 415 (463)
+.+++++.++++++.+.+.|++ +||+.+..+++++++|++++.. + .+..+++..+++++||.+.||..
T Consensus 291 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~----------~~~~~l~~~l~~~~gi~v~~g~~ 359 (392)
T 3b1d_A 291 WLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY-G----------LTDDALFTLLHDQAKVILNRGSD 359 (392)
Confidence 3456788899999999999988 7899999999999999655311 1 02344555555688999999999
Q ss_pred CCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 416 f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
|+. .+.+++||+++.+++++++++++|+++++
T Consensus 360 f~~-~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 360 YGS-EGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 974 35568999999778999999999998775
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=309.11 Aligned_cols=324 Identities=13% Similarity=0.144 Sum_probs=247.2
Q ss_pred HHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHH
Q 041151 32 ELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPG 111 (463)
Q Consensus 32 ~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~ 111 (463)
+...+|+++|||+.|.+.+ +. |+.+++++.+.+.. ...|++ .|..+
T Consensus 18 ~~~~~~~~~idl~~~~~~~------------------------~~-----~~~v~~a~~~~~~~----~~~y~~-~~~~~ 63 (364)
T 1lc5_A 18 VLGISPDQLLDFSANINPL------------------------GM-----PVSVKRALIDNLDC----IERYPD-ADYFH 63 (364)
T ss_dssp HHTSCGGGSEECSSCCCTT------------------------CC-----CHHHHHHHHHTGGG----GGSCCC-TTCHH
T ss_pred hcCCCccceEEeccccCCC------------------------CC-----CHHHHHHHHHHHHH----hhcCCC-CCHHH
Confidence 3344567799999998663 22 78899888887754 357865 47899
Q ss_pred HHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC---CCcc
Q 041151 112 VRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR---QQIG 172 (463)
Q Consensus 112 lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~---~~~~ 172 (463)
+|++++++++ +++++|++|+|+++++..++.++ +||+|+++ .|.++ +. +++.
T Consensus 64 l~~~la~~~~------~~~~~v~~~~g~~~al~~~~~~~---~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 134 (364)
T 1lc5_A 64 LHQALARHHQ------VPASWILAGNGETESIFTVASGL---KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQ 134 (364)
T ss_dssp HHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHH---CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred HHHHHHHHHC------cCHHHEEECCCHHHHHHHHHHHc---CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccc
Confidence 9999999995 67889999999999999999988 46999997 55555 22 2333
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
+ + +.+.+.+.+ ++++|++++||||||.+++.+++++|+++|+++|++||+||+|..+.++ +.+... +
T Consensus 135 ~-l-~~~~~~~~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~---~- 201 (364)
T 1lc5_A 135 L-T-DAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH-ETGFIP---A- 201 (364)
T ss_dssp C-C-TTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT-CCCSGG---G-
T ss_pred h-h-HHHHHhccC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC-ccchhh---H-
Confidence 3 4 555554433 7899999999999999999999999999999999999999999988762 222111 1
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHH
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYE 332 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 332 (463)
+ +..+++++++|+||++ |++|+|+||+++ +++++++.+..... +++++.+.|.++.++|+.
T Consensus 202 --~----~~~~~~i~~~s~sK~~-~~~G~r~G~~~~--~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~--------- 262 (364)
T 1lc5_A 202 --L----KDNPHIWVLRSLTKFY-AIPGLRLGYLVN--SDDAAMARMRRQQM-PWSVNALAALAGEVALQD--------- 262 (364)
T ss_dssp --C----TTCTTEEEEEESTTTT-TCTTTCCEEEEC--CCHHHHHHHHHHSC-TTCSCHHHHHHHHHGGGC---------
T ss_pred --h----ccCCCEEEEEECchhh-cCCccceEEEEE--CCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHhC---------
Confidence 1 2334689999999999 899999999994 48899998887765 678899999999999852
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC
Q 041151 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p 412 (463)
..+.++.++.++++++.+.+.|+++||+.+.++.| .|+|++++ .. ..++... |.++||.+.|
T Consensus 263 --~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g-~~~~~~~~--~~------------~~~l~~~-l~~~gi~v~~ 324 (364)
T 1lc5_A 263 --SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRA-NYLLLRCE--RE------------DIDLQRR-LLTQRILIRS 324 (364)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSS-SEEEEEES--CT------------TCCHHHH-HHTTTEECEE
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCC-eEEEEECC--Cc------------HHHHHHH-HHHCCcEEee
Confidence 13455678889999999999999888888776554 55675543 11 2233444 5567999999
Q ss_pred CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
|..|+.. +.+++||+++. .++++++++.|+++++++
T Consensus 325 g~~~~~~-~~~~iRis~~~-~~~~~~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 325 CANYPGL-DSRYYRVAIRS-AAQNERLLAALRNVLTGI 360 (364)
T ss_dssp CTTSTTC-CTTEEEEECCC-HHHHHHHHHHHHHHC---
T ss_pred CcccCCC-CCCEEEEEeCC-HHHHHHHHHHHHHHhhcc
Confidence 9998642 45699999985 578888888888877654
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=322.77 Aligned_cols=320 Identities=12% Similarity=0.138 Sum_probs=235.8
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhh-hcCCCCCccCCCCCC-----
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLS-LTSGGLGAYSDSRGI----- 109 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~-~~~~~~~~Y~~~~g~----- 109 (463)
.+.++|+|+.|.|+. +. |+.+.+++.+... .......+|++..|.
T Consensus 20 ~~~~~i~l~~g~p~~------------------------~~-----~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~ 70 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTA------------------------YE-----EYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLE 70 (391)
T ss_dssp TTTSCEECSSCCCGG------------------------GH-----HHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSC
T ss_pred CCCCeeEcCCCCCCC------------------------CC-----CHHHHHhHHHHhhcCccchhhcCCCCCCcccccC
Confidence 466799999999985 22 4334443322221 111245789999998
Q ss_pred HHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCC----EEEEc-------------cCceecCCCc
Q 041151 110 PGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGD----GVVLL-------------FHTTWKRQQI 171 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd----~Vlvp-------------~g~~~~~~~~ 171 (463)
++||+++|+|++ .+|+.+++ ++|++|+|+++++..++.+++ ++|| +|+++ .|.++ ..+
T Consensus 71 ~~lr~aia~~~~-~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~--~~~ 146 (391)
T 3bwn_A 71 PELEDAIKDLHG-VVGNAATEDRYIVVGTGSTQLCQAAVHALS-SLARSQPVSVVAAAPFYSTYVEETTYVRSGM--YKW 146 (391)
T ss_dssp HHHHHHHHHHHH-HHCSBCCSSSEEEEEEHHHHHHHHHHHHHH-HTSSSSSEEEEECSSCCTHHHHHHHTTCBTT--EEE
T ss_pred HHHHHHHHHHHH-hcCCCCCCCCeEEEeCChHHHHHHHHHHhc-CCCCCCcceEEEcCCCchhHHHHHHHcCCeE--EEe
Confidence 999999999997 67888877 599999999999999999998 8999 99997 34443 012
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC--eEEEecccccccccCCCCCccchH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN--LVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~--~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
.+|. +.++ .+ ++++|++++||||||.+++ +|++ ++++ ++||+||+|.+ +. ..++.
T Consensus 147 ~~d~-~~l~---~~------~~k~v~l~~p~NPtG~~~~-----~l~~--~~~~~~~~ii~De~y~~----~~--~~~l~ 203 (391)
T 3bwn_A 147 EGDA-WGFD---KK------GPYIELVTSPNNPDGTIRE-----TVVN--RPDDDEAKVIHDFAYYW----PH--YTPIT 203 (391)
T ss_dssp EEES-TTCC---CC------SCEEEEEESSCTTTCCCCC-----CCC-------CCCEEEEECTTCS----TT--TSCCC
T ss_pred cCCH-HHcC---CC------CCEEEEECCCCCCCchhHH-----HHHH--HhhcCCCEEEEeCCCCC----CC--CCccc
Confidence 2233 3332 12 7899999999999999997 3433 2255 99999999973 11 11221
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
...+++|+++||||+| |++|+|+||+++ +++++++.+.+... ..++++.+.|.++..+|+..
T Consensus 204 ----------~~~~~~i~~~S~SK~~-g~~GlRiG~~~~--~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---- 266 (391)
T 3bwn_A 204 ----------RRQDHDIMLFTFSKIT-GHAGSRIGWALV--KDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVL---- 266 (391)
T ss_dssp ----------CCBCCSEEEEEHHHHH-SCGGGCEEEEEE--CCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH----
T ss_pred ----------cCCCCeEEEEechhhc-CCCccceEEEEe--cCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCc----
Confidence 1124689999999999 999999999985 48899999988876 56889999999999988521
Q ss_pred chHHH-------HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-------------CceeEEeeeccCChhhHHHHh
Q 041151 329 ISYEQ-------FVRESKGILESLRRRARMMTDGFNSCRNVVCNFT-------------EGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 329 ~~~~~-------~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-------------~g~~~~~~~~~~~~~~~~~~~ 388 (463)
.. +.++.+++++.|+++++.+.+.|+++||+.+..| .+|+|+|++++ .
T Consensus 267 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~--~------- 334 (391)
T 3bwn_A 267 ---KETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTK--E------- 334 (391)
T ss_dssp ---HHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEES--S-------
T ss_pred ---chhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCC--c-------
Confidence 00 0234667899999999999999998877776544 44568896664 1
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
. +.+..+|+++||.++||+.|+. +.+++|||++.+++++++++++|++++++
T Consensus 335 ------~-~~~~~~l~~~gV~v~pg~~fg~--~~~~iRis~~~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 335 ------E-TDLVSELRRHKVMSRAGERCGS--DKKHVRVSMLSREDVFNVFLERLANMKLI 386 (391)
T ss_dssp ------S-CCHHHHHHHTTEECEEGGGGTC--CTTEEEEESCSCHHHHHHHHHHHHSCC--
T ss_pred ------H-HHHHHHHHHCCEEEccCCCCCC--CCCEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 1 2355678899999999999975 45699999998888999999999988754
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=314.28 Aligned_cols=360 Identities=16% Similarity=0.081 Sum_probs=263.4
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKH 91 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~ 91 (463)
.+++...+++.++.+...+.+. .++++|||+.|.|.... .+.+. ++.+.+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~-------------------~~~~~-----~~~v~~a~~~ 55 (394)
T 2ay1_A 2 LGNLKPQAPDKILALMGEFRAD--PRQGKIDLGVGVYKDAT-------------------GHTPI-----MRAVHAAEQR 55 (394)
T ss_dssp GGGCCCCCCCSHHHHHHHHHHC--CCTTCEECCCCSCCCTT-------------------SCCCC-----CHHHHHHHHH
T ss_pred CccCccCCCccHHHHHHHHHhC--CCccccccccceeeCCC-------------------CCccC-----cHHHHHHHHH
Confidence 3567778888888776655433 35679999999863100 00122 6888888887
Q ss_pred HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHHHHHhc-CCCCEEEEc-------
Q 041151 92 YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTLNCVIR-GEGDGVVLL------- 161 (463)
Q Consensus 92 ~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~~~l~~-~~gd~Vlvp------- 161 (463)
.+.. ...++|++..|..++|+++++++... .+++++|++ |+|+++++..++..+.. .+||+|+++
T Consensus 56 ~~~~--~~~~~y~~~~g~~~lr~~la~~~~~~---~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~ 130 (394)
T 2ay1_A 56 MLET--ETTKTYAGLSGEPEFQKAMGELILGD---GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNH 130 (394)
T ss_dssp HHHH--CCCCCCCCSSCCHHHHHHHHHHHHGG---GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHH
T ss_pred hcCC--cccCCCCCCCCcHHHHHHHHHHHhCC---CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhH
Confidence 7664 24568998899999999999998422 236789999 99999999999988751 399999997
Q ss_pred ------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +. +++++|+ +.|++.+++. .++++++++++||||||.+++.+++++|+++|+++|++||
T Consensus 131 ~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li 206 (394)
T 2ay1_A 131 VSIMNFMGLPVQTYRYFDAETRGVDF-EGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPL 206 (394)
T ss_dssp HHHHHHHTCCEEEEECEETTTTEECH-HHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHcCCceEEEecccccCCccCH-HHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 45555 22 6788999 9999998751 0135677778999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH----HHhhhh-
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE----IYKIAS- 304 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~----l~~~~~- 304 (463)
+||+|..+.+++.....++..+. .. . +++|+++|+||++ |++|+|+||+++...++++++. +.+...
T Consensus 207 ~De~~~~~~~~~~~~~~~~~~~~-~~----~--~~~i~~~s~sK~~-~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (394)
T 2ay1_A 207 IDLAYQGFGDGLEEDAAGTRLIA-SR----I--PEVLIAASCSKNF-GIYRERTGCLLALCADAATRELAQGAMAFLNRQ 278 (394)
T ss_dssp EEECCTTSSSCHHHHHHHHHHHH-HH----C--SSEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EecCccccccCcccchHHHHHHh-hc----C--CCEEEEEeccCCC-cCcCCccceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 99999987662100122333231 11 2 2589999999999 8999999999831015555444 332222
Q ss_pred hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEEeeeccCCh
Q 041151 305 IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYSFPQIRLPP 381 (463)
Q Consensus 305 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~~~~~~~~~ 381 (463)
...+++.+.|.++..+|+.. .....+.++.++++++++++++.+.+.|++++ ++.+..|++++|+|++++
T Consensus 279 ~~~~~~~~~~~a~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~--- 351 (394)
T 2ay1_A 279 TYSFPPFHGAKIVSTVLTTP----ELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT--- 351 (394)
T ss_dssp TTSSCCCHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC---
T ss_pred hcCCCChHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC---
Confidence 23445899999998887521 01112334567788999999999999998862 488888889999995432
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKF 446 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~ 446 (463)
. +.+..+++++||.+.|| +||+++ .+++++++++++|+++
T Consensus 352 -------------~-~~~~~~l~~~gi~v~~~-----------~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 352 -------------P-EQVKRIKEEFGIYMVGD-----------SRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp -------------H-HHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHH
T ss_pred -------------H-HHHHHHHHhCCEEecCC-----------CeEEeecCCHhhHHHHHHHHHHc
Confidence 2 23567788899999873 599998 6899999999999875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=307.61 Aligned_cols=285 Identities=16% Similarity=0.261 Sum_probs=227.3
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC-CEEEEc-------------cCc
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG-DGVVLL-------------FHT 164 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g-d~Vlvp-------------~g~ 164 (463)
....|++. +..++|+++|++++ +++++|++|+|+++++..++.+++ ++| |+|+++ .|.
T Consensus 51 ~~~~Y~~~-~~~~lr~~la~~~~------~~~~~v~~~~G~~~ai~~~~~~~~-~~g~d~Vl~~~p~~~~~~~~~~~~g~ 122 (356)
T 1fg7_A 51 TLNRYPEC-QPKAVIENYAQYAG------VKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGV 122 (356)
T ss_dssp CTTSCCCS-SCHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTC
T ss_pred hhccCCCc-cHHHHHHHHHHHhC------CChHHEEEcCCHHHHHHHHHHHHh-CCCCCEEEEeCCChHHHHHHHHHcCC
Confidence 35689876 48999999999995 678899999999999999999997 899 999997 566
Q ss_pred ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 165 TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 165 ~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
++ ...++.+|+ +.++++++ ++++|++++||||||.+++.+++++|+++|+ +|++||+||+|.++..
T Consensus 123 ~~~~v~~~~~~~~d~-~~l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~- 192 (356)
T 1fg7_A 123 ECRTVPTLDNWQLDL-QGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCP- 192 (356)
T ss_dssp EEEECCCCTTSCCCH-HHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSG-
T ss_pred EEEEeeCCCCCCCCH-HHHHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcC-
Confidence 65 234578999 99988764 4899999999999999999999999999999 9999999999998642
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHh
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLM 320 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 320 (463)
. .++..+. +..+++++++||||+| |++|+|+||++ +++++++.+.+... .++++.+.|.++.++
T Consensus 193 -~---~~~~~~~-------~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~-~~~~~~~~~~a~~~~ 256 (356)
T 1fg7_A 193 -Q---ASLAGWL-------AEYPHLAILRTLSKAF-ALAGLRCGFTL---ANEEVINLLMKVIA-PYPLSTPVADIAAQA 256 (356)
T ss_dssp -G---GCSGGGT-------TTCTTEEEEEESSSTT-CCGGGCCEEEE---ECHHHHHHHHHHSC-SSCSCHHHHHHHHHH
T ss_pred -C---CcHHHHH-------hhCCCEEEEecchHhh-cCchhhhEEEE---eCHHHHHHHHHhcC-CCCCCHHHHHHHHHH
Confidence 1 1222221 2234689999999999 99999999999 48999999988766 557899999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHH
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (463)
++. .. + .+.++.+++++++++.+.+.|++++++....|.+++|+|++++ . ..++..
T Consensus 257 l~~-----~~---~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~l~~ 312 (356)
T 1fg7_A 257 LSP-----QG---I-VAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--A-------------SSAVFK 312 (356)
T ss_dssp TSH-----HH---H-HHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--T-------------HHHHHH
T ss_pred hcC-----cc---H-HHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--C-------------HHHHHH
Confidence 852 11 1 2356678889999999999999986543344567778886654 1 344444
Q ss_pred HHHHhcCeEeeC-CCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 401 RLLEATGISTVP-GSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 401 ~ll~~~gI~v~p-g~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
. |.++||.++| |..|+.. +++||+++. ++++++++++|+++
T Consensus 313 ~-L~~~gI~v~~~g~~~~~~---~~iRis~~~-~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 313 S-LWDQGIILRDQNKQPSLS---GCLRITVGT-REESQRVIDALRAE 354 (356)
T ss_dssp H-HHHTTEECEECTTSTTCT---TEEEEECCC-HHHHHHHHHHHHTC
T ss_pred H-HHHCCEEEEECCCCCCCC---CeEEEEeCC-HHHHHHHHHHHHhh
Confidence 4 5789999999 8888752 389999985 58899999888753
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=304.45 Aligned_cols=319 Identities=13% Similarity=0.152 Sum_probs=248.5
Q ss_pred HhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHH
Q 041151 35 KEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRK 114 (463)
Q Consensus 35 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~ 114 (463)
.+++++|||+.|.+.. +. |+.+++++.+.+.. ...|+. .+..++|+
T Consensus 23 ~~~~~~idl~~~~~~~------------------------~~-----~~~v~~a~~~~~~~----~~~y~~-~~~~~l~~ 68 (361)
T 3ftb_A 23 FKGRELLDYSSNINPL------------------------GI-----PKSFLNNIDEGIKN----LGVYPD-VNYRRLNK 68 (361)
T ss_dssp -----CEETTCCCCTT------------------------CS-----CHHHHTTHHHHHHG----GGSCCC-TTCHHHHH
T ss_pred cCCCCEEEecCCCCCC------------------------CC-----CHHHHHHHHHHHHH----hcCCCC-ccHHHHHH
Confidence 3677899999997764 33 88999999888775 256754 67899999
Q ss_pred HHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c-CCCcccChHH
Q 041151 115 EVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K-RQQIGVLIIN 177 (463)
Q Consensus 115 ~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~-~~~~~~d~~~ 177 (463)
+++++++ +++++|++|+|+++++..++.++ |+|+++ .|.++ + ....++++ +
T Consensus 69 ~la~~~~------~~~~~i~~~~g~t~al~~~~~~~-----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~ 136 (361)
T 3ftb_A 69 SIENYLK------LKDIGIVLGNGASEIIELSISLF-----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDY-E 136 (361)
T ss_dssp HHHHHHT------CCSCEEEEESSHHHHHHHHHTTC-----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCH-H
T ss_pred HHHHHhC------CCcceEEEcCCHHHHHHHHHHHc-----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCH-H
Confidence 9999995 78899999999999999998876 888886 56665 2 33457888 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
.+++.+++ +++|++++||||||.+++.+++++|+++|++||+++|+||+|..+.++ .. .+.... .
T Consensus 137 ~l~~~l~~-------~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~-~~~~~~---~-- 201 (361)
T 3ftb_A 137 DIISKIDD-------VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD--PS-SSFVGE---I-- 201 (361)
T ss_dssp HHHHHTTT-------CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC--TT-SSSGGG---T--
T ss_pred HHHHhccC-------CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC--cc-cchhHh---c--
Confidence 99988763 799999999999999999999999999999999999999999998773 21 222221 1
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 337 (463)
...+++++++|+||.+ |++|+|+||+++ +++++++.+..... .++++.+.|.++.++++. .++
T Consensus 202 --~~~~~~i~~~s~sK~~-~~~G~r~g~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-----------~~~ 264 (361)
T 3ftb_A 202 --KNYSCLFIIRAMTKFF-AMPGIRFGYGIT--NNKEIAAKIKAKQN-PWNINCFAEMAAINCLKD-----------TNY 264 (361)
T ss_dssp --TTCSSEEEEEESSSTT-SCGGGCCEEEEE--SCHHHHHHHHTTSC-TTCSCHHHHHHHHHTSSC-----------HHH
T ss_pred --ccCCCEEEEeeChhhc-CCCCcceeEEEe--CCHHHHHHHHhhCC-CCCCCHHHHHHHHHHhcC-----------HHH
Confidence 3345789999999999 899999999986 68999999988776 578899999999999862 234
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcc-cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC
Q 041151 338 SKGILESLRRRARMMTDGFNSCRNVV-CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
.++.+++++++++.+.+.|+++|++. +.++.|+ |+|+.++ . .+..++... |.++||.+.||..|
T Consensus 265 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~--~-----------~~~~~l~~~-l~~~gi~v~~g~~~ 329 (361)
T 3ftb_A 265 IEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLE--N-----------ISGEKLYDS-LLKEDIVIRRCCNF 329 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSS-EEEEEES--S-----------SCHHHHHHH-HHTTTEECEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCe-EEEEEcC--C-----------CCHHHHHHH-HHHCCeEEeeCccC
Confidence 55678889999999999999998888 6766665 4564443 2 124454444 55669999999999
Q ss_pred CCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 417 ~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+. .+.+++||+++ +.++++++++.|+++.+
T Consensus 330 ~~-~~~~~iRis~~-~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 330 IG-LDDSFVRFAIK-DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp TT-CCTTEEEEECC-CHHHHHHHHHHHHHHHH
T ss_pred CC-CCCCEEEEEcC-CHHHHHHHHHHHHHHHh
Confidence 75 34569999998 44677777777766553
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=324.84 Aligned_cols=308 Identities=13% Similarity=0.087 Sum_probs=235.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCC-C---CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSR-G---IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV------- 150 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~-g---~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l------- 150 (463)
|+.+.+++.+++.........|++.. | .++||++||+|++++++..+++++|++|+|+++++..++.++
T Consensus 71 ~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~ 150 (427)
T 2hox_A 71 EYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTAT 150 (427)
T ss_dssp HHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTC
T ss_pred CHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccc
Confidence 56667777776643211234599888 9 999999999999987777788999999999999999999999
Q ss_pred -hcCCCCEEEEc-------------cCceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 151 -IRGEGDGVVLL-------------FHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 151 -~~~~gd~Vlvp-------------~g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
+ +|||.|+++ .|+++ ..+.+|+ +.|++.+++ ++|+|++++||||||.+++ +
T Consensus 151 ~~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~~--~~~~~d~-~~l~~~~~~------~~k~v~l~~p~NPtG~~~~-~---- 215 (427)
T 2hox_A 151 PD-APESKVVAHAPFYPVFREQTKYFDKKG--YVWAGNA-ANYVNVSNP------EQYIEMVTSPNNPEGLLRH-A---- 215 (427)
T ss_dssp TT-SCCEEEEECSSCCHHHHHHHHHSCBTT--EEEEEEG-GGGTTCSCG------GGEEEEEESSCTTTCCCCC-C----
T ss_pred cC-CCCCEEEEeCCCcccHHHHHHHcCCee--eeecCCH-HHHHHhhcC------CceEEEEcCCCCCcccccH-H----
Confidence 8 899999997 33333 2467888 999887765 7899999999999999999 4
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
+++ ++.+++|++|.+ + ..++..+ . .+++|+++||||.+ |++|+|+||+++ .+++++
T Consensus 216 ---~l~--~~~~i~d~~~~~-----~--~~s~~~~--------~-~~~~i~~~S~SK~~-g~~G~RiG~~~~--~~~~l~ 271 (427)
T 2hox_A 216 ---VIK--GCKSIYDMVYYW-----P--HYTPIKY--------K-ADEDILLFTMSKFT-GHSGSRFGWALI--KDESVY 271 (427)
T ss_dssp ---SST--TCEEEEECTTCS-----T--TTSCCCS--------C-BCCSEEEEEHHHHT-SCGGGCCEEEEE--CCHHHH
T ss_pred ---HHc--CCCEEEeecccC-----C--CCCcccc--------C-CCceEEEEeChhcC-CCCCceEEEEEE--CCHHHH
Confidence 222 455666766632 1 1222211 2 34789999999999 999999999995 358999
Q ss_pred HHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH-----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc------
Q 041151 297 DEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE-----QFVRESKGILESLRRRARMMTDGFNSCRNVVC------ 364 (463)
Q Consensus 297 ~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~------ 364 (463)
+.+.+... ..++++.+.|.++..+|++.. .+- .+.++.+..++.|+++++.+.+.|+++||+.+
T Consensus 272 ~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 347 (427)
T 2hox_A 272 NNLLNYMTKNTEGTPRETQLRSLKVLKEVV----AMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQS 347 (427)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhcch----hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccc
Confidence 99988876 567899999999988875210 000 01234556788899999999999998766654
Q ss_pred --------ccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcH
Q 041151 365 --------NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436 (463)
Q Consensus 365 --------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i 436 (463)
..|++++|+|++++. ++.+++..+++++||.++||+.|+. +.+++|||++.+++++
T Consensus 348 ~~~~~~~~~~p~~g~f~~~~~~~--------------~~~~~~~~ll~~~gI~v~pg~~f~~--~~~~~Ris~~~~~e~l 411 (427)
T 2hox_A 348 EYCNYFRRMRPPSPSYAWVKCEW--------------EEDKDCYQTFQNGRINTQNGVGFEA--SSRYVRLSLIKTQDDF 411 (427)
T ss_dssp EEETTTTEEECCCCSEEEEEECS--------------GGGCSHHHHHHHTTEECEEGGGGTS--CTTEEEEECSSCHHHH
T ss_pred cccccccccCCCCceEEEEECCC--------------cHHHHHHHHHHHCCEEEcCCCccCC--CCCEEEEEecCCHHHH
Confidence 356789999977652 1334566777889999999999986 4569999999888899
Q ss_pred HHHHHHHHHHHH
Q 041151 437 PAIMESFKKFND 448 (463)
Q Consensus 437 ~~~~~~l~~~l~ 448 (463)
++++++|+++++
T Consensus 412 ~~~l~~l~~~~~ 423 (427)
T 2hox_A 412 DQLMYYLKDMVK 423 (427)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998874
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=298.00 Aligned_cols=304 Identities=18% Similarity=0.239 Sum_probs=239.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+.+++.+.+.........|++..+ .++|+++++++.+.+|+.+++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 45 ~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~-~~gd~Vl~~ 122 (369)
T 3cq5_A 45 SEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG-GPGRTALGF 122 (369)
T ss_dssp CHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-STTCEEEEE
T ss_pred CHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc-CCCCEEEEc
Confidence 889999998887652123567887666 799999999999888888889999999999999999999997 899999997
Q ss_pred -------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 -------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 -------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|.++ .+.++.+|+ +.|++.+++. ++++|++++||||||.+++.+++.+|++.|
T Consensus 123 ~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~--- 193 (369)
T 3cq5_A 123 QPSYSMHPILAKGTHTEFIAVSRGADFRIDM-DVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVA--- 193 (369)
T ss_dssp ESSCTHHHHHHHHTTCEEEEEECCTTSSCCH-HHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHC---
T ss_pred CCChHHHHHHHHHcCCEEEEecCCcCCCCCH-HHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---
Confidence 56555 334568999 9999999864 689999999999999999988888777754
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCc-eEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEV-QLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
+++||+||+|+.+.+ + .+...+. +..+ ++++++|+||++ |++|+|+||+++ ++++++.+....
T Consensus 194 ~~~li~De~~~~~~~-~----~~~~~~~-------~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~---~~~~~~~l~~~~ 257 (369)
T 3cq5_A 194 PGIVIVDEAYAEFSP-S----PSATTLL-------EKYPTKLVVSRTMSKAF-DFAGGRLGYFVA---NPAFIDAVMLVR 257 (369)
T ss_dssp SSEEEEECTTGGGCC-S----CCGGGGT-------TTCTTTEEEEEESSSTT-SCGGGCCEEEEE---CTHHHHHHHTTS
T ss_pred CCEEEEECCchhhcC-C----cchHHHH-------hhCCCCEEEEEechHhc-CCcccceEEEEe---CHHHHHHHHHcC
Confidence 599999999998765 2 1222221 2233 689999999999 889999999995 788888887766
Q ss_pred hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhh
Q 041151 304 SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 304 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
. .++++.+.|.++.++++. ..+.++.+++++++++.+.+.|++. |+.+.++. +.|+|++++ .
T Consensus 258 ~-~~~~~~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~--~-- 319 (369)
T 3cq5_A 258 L-PYHLSALSQAAAIVALRH-----------SADTLGTVEKLSVERVRVAARLEEL-GYAVVPSE-SNFVFFGDF--S-- 319 (369)
T ss_dssp C-TTCSCHHHHHHHHHHHHT-----------HHHHHTHHHHHHHHHHHHHHHHHHH-TCEEECCS-SSEEEEECC--S--
T ss_pred C-CCCCCHHHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCCC-CeEEEEECC--C--
Confidence 5 567899999999888741 2345567888999999999999885 88877554 456775443 1
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+..++. +.|.++||.+.|| + ..+++||+++ +++++++++++|+++++
T Consensus 320 ----------~~~~l~-~~l~~~gi~v~~~---~---~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 320 ----------DQHAAW-QAFLDRGVLIRDV---G---IAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp ----------SHHHHH-HHHHHTTEECBCC---S---CTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred ----------CHHHHH-HHHHHCCEEEEEC---C---CCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 134444 4467889999998 2 1348999999 66899999999988763
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=301.99 Aligned_cols=339 Identities=16% Similarity=0.160 Sum_probs=251.2
Q ss_pred ChhhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHH
Q 041151 7 DYESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAI 86 (463)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 86 (463)
+.+.+++++..++++..+.. ..+++++|+|+.|+|++ +. |+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~l~~~~~~~------------------------~~-----~~~v~ 45 (360)
T 3hdo_A 2 SLIPLRQNIASMKGYIPGYQ-------PPDIASWIKLNTNENPY------------------------PP-----SPEVV 45 (360)
T ss_dssp --CCCCHHHHHCCCCCCCCC-------CSCCTTSEECSSCCCSS------------------------CC-----CHHHH
T ss_pred CchhhHHHHHhcCCcCCCCC-------CccccceeeccCCCCCC------------------------CC-----CHHHH
Confidence 34457777888777765432 12567899999999885 44 88999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----
Q 041151 87 ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL----- 161 (463)
Q Consensus 87 ~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----- 161 (463)
+++.+.+.........|++. +..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 46 ~a~~~~~~~~~~~~~~y~~~-~~~~lr~~la~~~g------~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~ 117 (360)
T 3hdo_A 46 KAILEELGPDGAALRIYPSA-SSQKLREVAGELYG------FDPSWIIMANGSDEVLNNLIRAFA-AEGEEIGYVHPSYS 117 (360)
T ss_dssp HHHHHHHTTTCGGGGSCCCS-SCHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCT
T ss_pred HHHHHHHhcccchhhcCCCC-chHHHHHHHHHHhC------cCcceEEEcCCHHHHHHHHHHHHh-CCCCEEEEcCCChH
Confidence 99998887621125678765 56999999999995 788999999999999999999997 899999997
Q ss_pred --------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 --------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 --------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ +.+ ...++ +.+++. .++++|++++|+||||.+++.+++.+ +|+++|++||+
T Consensus 118 ~~~~~~~~~g~~~~~v~~~-~~~~~-~~l~~~--------~~~~~v~i~~p~nptG~~~~~~~l~~---l~~~~~~~li~ 184 (360)
T 3hdo_A 118 YYGTLAEVQGARVRTFGLT-GDFRI-AGFPER--------YEGKVFFLTTPNAPLGPSFPLEYIDE---LARRCAGMLVL 184 (360)
T ss_dssp HHHHHHHHHTCEEEEECBC-TTSSB-TTCCSS--------BCSSEEEEESSCTTTCCCCCHHHHHH---HHHHBSSEEEE
T ss_pred HHHHHHHHCCCEEEEeeCC-CCCCH-HHHHhh--------cCCCEEEEeCCCCCCCCCcCHHHHHH---HHHHCCCEEEE
Confidence 55555 221 11233 333221 14679999999999999999776555 55688999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPN 310 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~ 310 (463)
||+|+.+.. ....++. +..+++++++|+||++ |++|+|+||++ +++++++.+..... .++++
T Consensus 185 De~~~~~~~---~~~~~~~----------~~~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~~~~~~~-~~~~~ 246 (360)
T 3hdo_A 185 DETYAEFAE---SNALELV----------RRHENVVVTRTLSKSY-SLAGMRIGLAI---ARPEVIAALDKIRD-HYNLD 246 (360)
T ss_dssp ECTTGGGSS---CCCTHHH----------HHCSSEEEEEESTTTT-SCTTSCCEEEE---CCHHHHHHHHHHSC-SCCSC
T ss_pred ECChHhhCC---cchhHHh----------ccCCCEEEEecchHhh-cCCccceeeEe---eCHHHHHHHHHhCC-CCCCC
Confidence 999998522 2222222 1124689999999999 89999999999 59999999988776 57889
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+.|.++..+|+. ..+.++.+++++++++.+.+.|+++ |+.+.++.+ .|+|+.+ +..
T Consensus 247 ~~~~~a~~~~l~~-----------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~-~~~~~~~--~~~-------- 303 (360)
T 3hdo_A 247 RLAQAACVAALRD-----------QAYLSECCRRIRETREWFTTELRSI-GYDVIPSQG-NYLFATP--PDR-------- 303 (360)
T ss_dssp HHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHHHHHHHHHHT-TCEECCCSS-SEEEEEC--TTC--------
T ss_pred HHHHHHHHHHhcC-----------HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEcCCCc-cEEEEEC--CCC--------
Confidence 9999999988752 2345567888999999999999998 888776555 4566433 321
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+..++ .+.|.++||.++++..++ ..+++||+++ +++++++++++|+++.+.+-
T Consensus 304 ---~~~~l-~~~l~~~gi~v~~~~~~~---~~~~iRis~~-~~~e~~~l~~al~~~~~~~~ 356 (360)
T 3hdo_A 304 ---DGKRV-YDGLYARKVLVRHFSDPL---LAHGMRISIG-TREEMEQTLAALKEIGEGHH 356 (360)
T ss_dssp ---CHHHH-HHHHHHTTEECBCCCSTT---TTTSEEEECC-CHHHHHHHHHHHHHHHC---
T ss_pred ---CHHHH-HHHHHHCCEEEEECCCCC---CCCEEEEEcC-CHHHHHHHHHHHHHHhcccc
Confidence 23444 456778899999977632 3458999999 56899999999887765543
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=292.00 Aligned_cols=307 Identities=18% Similarity=0.201 Sum_probs=236.0
Q ss_pred HHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHH
Q 041151 33 LQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGV 112 (463)
Q Consensus 33 ~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~l 112 (463)
..+..+++|+|+.+.+.+ |. |+.+.+++.+.+.. ...|+ ..|..+|
T Consensus 11 ~~~~~~~~i~l~~n~~~~------------------------~~-----~~~v~~a~~~~~~~----~~~y~-~~~~~~l 56 (337)
T 3p1t_A 11 EVRAAAQAVCLAFNENPE------------------------AV-----EPRVQAAIAAAAAR----INRYP-FDAEPRV 56 (337)
T ss_dssp ---CCCCCEECSSCCCCS------------------------CC-----CHHHHHHHHHHGGG----TTSCC-TTHHHHH
T ss_pred cccCCCCceEeeCCCCCC------------------------CC-----CHHHHHHHHHhhhh----hccCC-CCchHHH
Confidence 344566799999996543 33 88899988887764 36785 4688999
Q ss_pred HHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee----cCCCcccCh
Q 041151 113 RKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW----KRQQIGVLI 175 (463)
Q Consensus 113 r~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~----~~~~~~~d~ 175 (463)
|++++++++ +++++|++|+|+++++..++.++ +||+|+++ .|.++ ...++++|+
T Consensus 57 r~~la~~~~------~~~~~i~~t~G~~~~l~~~~~~~---~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~ 127 (337)
T 3p1t_A 57 MRKLAEHFS------CPEDNLMLVRGIDECFDRISAEF---SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDP 127 (337)
T ss_dssp HHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHS---TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCH
T ss_pred HHHHHHHhC------cCHHHEEEeCCHHHHHHHHHHhc---CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCH
Confidence 999999996 77889999999999999999986 79999997 56665 345678999
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhc
Q 041151 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255 (463)
Q Consensus 176 ~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 255 (463)
+.|++. . ++++|++++||||||.+++.+++.+|++ ++++ +|+||+|+.+.+. ... ..
T Consensus 128 -~~l~~~--~------~~~~v~i~~p~nptG~~~~~~~l~~l~~---~~~~-~ivDea~~~~~~~-~~~--~~------- 184 (337)
T 3p1t_A 128 -NDLAQV--S------RDDCVVLANPSNPTGQALSAGELDQLRQ---RAGK-LLIDETYVDYSSF-RAR--GL------- 184 (337)
T ss_dssp -HHHTTC--C------TTEEEEEESSCTTTCCCCCHHHHHHHHH---HCSE-EEEECTTGGGSSC-SSS--CC-------
T ss_pred -HHHHhh--c------CCCEEEEeCCCCCCCCCCCHHHHHHHHH---hCCc-EEEECCChhhccc-ccc--cc-------
Confidence 999875 2 6799999999999999999887776654 6776 5669999986542 111 11
Q ss_pred CCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 256 GLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 256 ~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
...+++|+++|+||++ |++|+|+||++ +++++++.+.+... .++++.+.|.++..+++..
T Consensus 185 ----~~~~~~i~~~S~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~-~~~~~~~~~~a~~~~l~~~----------- 244 (337)
T 3p1t_A 185 ----AYGENELVFRSFSKSY-GLAGLRLGALF---GPSELIAAMKRKQW-FCNVGTLDLHALEAALDND----------- 244 (337)
T ss_dssp ----CCBTTEEEEEESSSTT-CCTTTCCEEEE---CCHHHHHHHHTTSC-TTCSCHHHHHHHHHHHTCH-----------
T ss_pred ----ccCCCEEEEeeCchhc-cCcchheEEEE---eCHHHHHHHHhhcC-CCCCCHHHHHHHHHHhCCH-----------
Confidence 2234689999999999 99999999999 69999999887665 5778899999999888631
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 415 (463)
....+.++++.++++.+.+.|+++ |+.+.+++++|+.| ..+. .. .+..+|.++||.+.||..
T Consensus 245 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~---~~~~-------------~~-~~~~~l~~~gi~v~~g~~ 306 (337)
T 3p1t_A 245 RAREAHIAKTLAQRRRVADALRGL-GYRVASSEANFVLV---ENAA-------------GE-RTLRFLRERGIQVKDAGQ 306 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSEEEE---ECTT-------------TH-HHHHHHHHTTEECEEGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-cCEECCCCCeEEEE---EcCC-------------HH-HHHHHHHHCCeEEEECcc
Confidence 112234555677788899999988 88888888776654 3222 22 345678889999999999
Q ss_pred CCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 416 f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
|+.. +++|||++ ++++++++++.|+++.
T Consensus 307 ~~~~---~~iRis~~-~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 307 FGLH---HHIRISIG-REEDNDRLLAALAEYS 334 (337)
T ss_dssp GTCC---SEEEEECC-CHHHHHHHHHHHHHHT
T ss_pred CCCC---CeEEEecC-CHHHHHHHHHHHHHHh
Confidence 9762 48999999 4688999998888765
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=296.68 Aligned_cols=311 Identities=14% Similarity=0.133 Sum_probs=235.9
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
+|+++|||+.|.|.. +. |+.+++++.+.+. ....|+++.+ .++|++
T Consensus 13 ~g~~~id~~~~~~~~------------------------~~-----~~~v~~a~~~~~~----~~~~y~~~~~-~~lr~~ 58 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTD------------------------GD-----KDHLEKHLVENLN----CIRHYPEPDA-GTLRQM 58 (350)
T ss_dssp ---CCEECSCCSCCC------------------------SC-----CHHHHHHHHHTGG----GGGSCCCTTC-HHHHHH
T ss_pred ccccEEEccCCCCCC------------------------CC-----CHHHHHHHHHhHh----HHhcCCCCcH-HHHHHH
Confidence 457899999998775 43 8899999988774 3468888776 899999
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---cC--CCcccChHH
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---KR--QQIGVLIIN 177 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~~--~~~~~d~~~ 177 (463)
+|++++ +++++|++|+|+++++..++.++. ||+|+++ .|.++ +. ...++++
T Consensus 59 la~~~~------~~~~~i~~t~g~~~al~~~~~~l~---gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-- 127 (350)
T 3fkd_A 59 LAKRNS------VDNNAILVTNGPTAAFYQIAQAFR---GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF-- 127 (350)
T ss_dssp HHHHTT------CCGGGEEEESHHHHHHHHHHHHTT---TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC--
T ss_pred HHHHhC------cCHHHEEEcCCHHHHHHHHHHHHC---CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc--
Confidence 999985 788999999999999999999883 9999997 56665 22 2244443
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
+ ++++|++++||||||.+++.+++.+|+++|+++ +||+||+|..+.+. +... . .. +
T Consensus 128 -------~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~-~~~~-~-~~----~-- 183 (350)
T 3fkd_A 128 -------S------NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTE-EVIR-P-AD----I-- 183 (350)
T ss_dssp -------T------TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSS-CCCC-G-GG----G--
T ss_pred -------C------CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccC-cchh-h-HH----h--
Confidence 2 799999999999999999999999999998866 99999999988763 2221 1 11 1
Q ss_pred CCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH
Q 041151 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337 (463)
Q Consensus 258 ~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 337 (463)
+..+++|+++||||++ |++|+|+||++ .++++++.+.+... .++++.+.|.++..+|+... . +.+
T Consensus 184 --~~~~~~i~~~S~sK~~-~~~G~r~G~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~----~---~~~- 248 (350)
T 3fkd_A 184 --KGRKNLVMVYSFSHAY-GIPGLRIGYIV---ANKDFMKRVAAFST-PWAVNALAIEAAKFILIHPA----Q---FTL- 248 (350)
T ss_dssp --TTCSSEEEEEESHHHH-SCGGGCCEEEE---CCHHHHHHHHTTCC-TTCSCHHHHHHHHHHHHCTT----T---TCC-
T ss_pred --hcCCCEEEEecCchhc-cCcchheEeEE---eCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHhCHH----H---HHH-
Confidence 4455789999999999 89999999999 59999999988776 57889999999999886432 0 111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 338 SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 338 ~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
.+++.+ ++++.+.+.|+++||+.+.++.+ .|+|++++.. +..++...+++++||.++||+.|+
T Consensus 249 --~~~~~~-~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~l~~~L~~~~gi~v~~g~~f~ 311 (350)
T 3fkd_A 249 --PIRKWQ-RNTVDFITALNRLDGVEVHPSGT-TFFLLRLKKG-------------TAAELKKYMLEEYNMLIRDASNFR 311 (350)
T ss_dssp --CHHHHH-HHHHHHHHHHHHSTTEEECCCSS-SEEEEEESSS-------------CHHHHHHHHHHTTCEECEECTTST
T ss_pred --HHHHHH-HHHHHHHHHHhcCCCcEECCCCC-cEEEEECCCC-------------CHHHHHHHHHHHCCEEEEeCccCC
Confidence 122223 77888999998888998876655 4556555421 245555555554999999999997
Q ss_pred CCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 418 ~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
. .+.+++|||++. +++++++++.|+++.++
T Consensus 312 ~-~~~~~iRis~~~-~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 312 G-LDESYVRITTQR-PAQNQLFIKALETFLEK 341 (350)
T ss_dssp T-CCTTEEEEECCC-HHHHHHHHHHHHHHHTC
T ss_pred C-CCCCEEEEEcCC-HHHHHHHHHHHHHHHHH
Confidence 5 346799999984 46777777777655543
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=284.41 Aligned_cols=314 Identities=14% Similarity=0.125 Sum_probs=236.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+.+++.+.+.........|++..|..++++++++++.+.+|. ++|++|+|+++++..++.+++ ++||.|+++
T Consensus 59 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~~~~~~~~~-~~gd~V~~~ 133 (398)
T 3a2b_A 59 DTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSNLGPLSCLM-GRNDYILLD 133 (398)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHHHSS-CTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHHHHHHHHHh-CCCCEEEEC
Confidence 788999998887653223446777788889999999999887663 689999999999999999997 899999997
Q ss_pred -------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 162 -------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 162 -------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
.|.++ .-.. +|+ +.|++.+++... .++++|++++|+||||.+++ +++|+++|+++|++
T Consensus 134 ~p~~~~~~~~~~~~g~~~~~v~~--~d~-~~l~~~l~~~~~--~~~~~v~~~~~~nptG~~~~---~~~l~~~~~~~~~~ 205 (398)
T 3a2b_A 134 ERDHASIIDGSRLSFSKVIKYGH--NNM-EDLRAKLSRLPE--DSAKLICTDGIFSMEGDIVN---LPELTSIANEFDAA 205 (398)
T ss_dssp TTCCHHHHHHHHHSSSEEEEECT--TCH-HHHHHHHHTSCS--SSCEEEEEESBCTTTCCBCC---HHHHHHHHHHHTCE
T ss_pred CccCHHHHHHHHHcCCceEEeCC--CCH-HHHHHHHHhhcc--CCceEEEEeCCCCCCCCccC---HHHHHHHHHHcCcE
Confidence 45555 1111 588 999999875210 15899999999999999988 78888899999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCce-EEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-h-
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQ-LVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA-S- 304 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~- 304 (463)
||+||+|+.+.++ .. ..++... + +..++ +++++|+||++ +++| ||++ +++++++.+.... .
T Consensus 206 li~De~~~~~~~~-~~-~~~~~~~---~----~~~~~~di~~~s~sK~~-~~~G---G~~~---~~~~~~~~l~~~~~~~ 269 (398)
T 3a2b_A 206 VMVDDAHSLGVIG-HK-GAGTASH---F----GLNDDVDLIMGTFSKSL-ASLG---GFVA---GDADVIDFLKHNARSV 269 (398)
T ss_dssp EEEECTTTTTTSS-GG-GCCHHHH---H----TCGGGCSEEEEESSSTT-CSSC---EEEE---ECHHHHHHHHHHCHHH
T ss_pred EEEECCCcccccC-CC-CCchHhh---c----CCCcCCeEEEecccccc-cCCC---cEEE---eCHHHHHHHHHhcccc
Confidence 9999999987662 11 1233222 1 11123 59999999999 7778 9999 4889999988753 3
Q ss_pred hcccCChHHHHH-HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhh
Q 041151 305 IALSPNVPAQIF-MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 305 ~~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
...+++.+.|.+ +..+++ ..++.++++++++++++.+.+.|+++ |+.+..+.| +++|+.+ +.+.
T Consensus 270 ~~~~~~~~~~~a~~~~~l~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~g-~~~~~~~--~~~~ 334 (398)
T 3a2b_A 270 MFSASMTPASVASTLKALE-----------IIQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGATES-PILPIFI--RSNE 334 (398)
T ss_dssp HSSBCCCHHHHHHHHHHHH-----------HHHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCSCCS-SEEEEEC--CCHH
T ss_pred eecCCCCHHHHHHHHHHHH-----------HHhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCCCCC-CEEEEEc--CCHH
Confidence 345566777764 445653 12344568889999999999999998 888877764 6777544 4321
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..++... |.++||.+.||..|+.+.+.+++||+++ .+++++++++++|+++++++
T Consensus 335 ----------~~~~l~~~-l~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 335 ----------KTFWVTKM-LQDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp ----------HHHHHHHH-HHHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHH-HHHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 13444444 5556999999998875434568999999 59999999999999988654
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=279.26 Aligned_cols=300 Identities=15% Similarity=0.204 Sum_probs=230.3
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
.++|+|+.|.++. +. |+.+++++.+.+... ....|++. +..++|++++
T Consensus 19 ~~~i~l~~~~~~~------------------------~~-----~~~v~~a~~~~~~~~--~~~~y~~~-~~~~lr~~la 66 (335)
T 1uu1_A 19 RDKTYLALNENPF------------------------PF-----PEDLVDEVFRRLNSD--ALRIYYDS-PDEELIEKIL 66 (335)
T ss_dssp CCSEEESSCCCSS------------------------CC-----CHHHHHHHHHTCCGG--GGGSCCCS-SCHHHHHHHH
T ss_pred CcceECCCCCCCC------------------------CC-----CHHHHHHHHHHhhhh--hhhcCCCC-chHHHHHHHH
Confidence 3589999998764 33 889999998877431 34678664 6899999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------cCcee---c-CCCcccChHHHHHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------FHTTW---K-RQQIGVLIINDLQQ 181 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------~g~~~---~-~~~~~~d~~~~l~~ 181 (463)
++++++ .+++++|++|+|+++++..++.++ ||+|+++ .|.++ + +.++.+|+ +.|
T Consensus 67 ~~~~~~---~~~~~~v~~~~G~~~al~~~~~~~----gd~Vl~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l-- 136 (335)
T 1uu1_A 67 SYLDTD---FLSKNNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPE-VNV-- 136 (335)
T ss_dssp HHHTCS---SCCGGGEEEESSHHHHHHHHHHHS----SEEEECSSSCHHHHHHHHHHTCEEEECCCCTTSCCCC-CCC--
T ss_pred HHcCCC---CCCHHHEEEcCChHHHHHHHHHHh----CCcEEECCCcHHHHHHHHHcCCeEEEeccCCCCCCCH-HHc--
Confidence 999643 457789999999999999999987 7888885 45555 2 33467888 777
Q ss_pred HHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC
Q 041151 182 SVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261 (463)
Q Consensus 182 ~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
+ ++++|++++||||||.+++.+++.+|+++| + ++|+||+|+.+.+ . +..+. + +.
T Consensus 137 ---~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~---~-~li~De~~~~~~~-~--~~~~~------~----~~ 190 (335)
T 1uu1_A 137 ---G------EGDVVFIPNPNNPTGHVFEREEIERILKTG---A-FVALDEAYYEFHG-E--SYVDF------L----KK 190 (335)
T ss_dssp ---C------TTEEEEEESSCTTTCCCCCHHHHHHHHHTT---C-EEEEECTTHHHHC-C--CCGGG------G----GT
T ss_pred ---C------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---C-EEEEECcchhhcc-h--hHHHH------h----hh
Confidence 2 689999999999999999999999998877 7 8999999998654 1 21221 1 33
Q ss_pred CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 262 ~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
.+++++++|+||++ |++|+|+||++ +++++++.+.+... .++++.+.|.++.++|+. ..+.++.
T Consensus 191 ~~~~i~~~s~sK~~-g~~G~r~G~~~---~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~l~~-----------~~~~~~~ 254 (335)
T 1uu1_A 191 YENLAVIRTFSKAF-SLAAQRVGYVV---ASEKFIDAYNRVRL-PFNVSYVSQMFAKVALDH-----------REIFEER 254 (335)
T ss_dssp CSSEEEEEESTTTT-TCGGGCCEEEE---ECHHHHHHHHHHSC-TTCSCHHHHHHHHHHHHT-----------HHHHHHH
T ss_pred CCCEEEEecchhhc-CCcccCeEEEE---eCHHHHHHHHHhcC-CCCcCHHHHHHHHHHhCC-----------HHHHHHH
Confidence 34789999999999 89999999999 48999999887765 468899999999988752 2335567
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 342 LESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
+++++++++.+.+.|+++ |+.+. |.+++|+|+++ +.. +..++. ..|.++||.+.|+
T Consensus 255 ~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~--~~~-----------~~~~~~-~~l~~~gi~v~~~-------- 310 (335)
T 1uu1_A 255 TKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFM--EKE-----------EKERLL-EHLRTKNVAVRSF-------- 310 (335)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEEC--CTH-----------HHHHHH-HHHHHHTEEEEEE--------
T ss_pred HHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEEC--CCC-----------CHHHHH-HHHHHCCEEEEEC--------
Confidence 888999999999999887 77765 44567788554 321 133444 4455789999981
Q ss_pred CcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 422 IFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 422 ~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
.+++|||++.. +++++++++|+++
T Consensus 311 ~~~iRis~~~~-~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 311 REGVRITIGKR-EENDMILRELEVF 334 (335)
T ss_dssp TTEEEEECCCH-HHHHHHHHHHHCC
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHhh
Confidence 23899999854 6799999888753
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=265.04 Aligned_cols=314 Identities=13% Similarity=0.115 Sum_probs=222.6
Q ss_pred cHHHHHHHHHHhhhcCCC----CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGG----LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+.+++.+.+...... ...|+...+..++|+.++++++ . +++|++++| ++++..++.+++ ++||.
T Consensus 59 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~------~-~~~i~~~sG-t~a~~~~l~~~~-~~gd~ 129 (399)
T 3tqx_A 59 HPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG------T-DDTILYSSC-FDANGGLFETLL-GPEDA 129 (399)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT------C-SEEEEESCH-HHHHHTTHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC------C-CcEEEECch-HHHHHHHHHHhc-CCCCE
Confidence 788999988887763211 1112233345788888888874 2 256666666 779999999997 99999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ +.|++.+++....+.++++|++++|+||||.+++ +++|+++|++
T Consensus 130 v~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~-~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~ 203 (399)
T 3tqx_A 130 IISDELNHASIIDGIRLCKAQRYRYK--NNAM-GDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD---LKSICDLADK 203 (399)
T ss_dssp EEEETTCCHHHHHHHHSCCSEEEEEC--TTCT-THHHHHHHHHHTTTCSSEEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHcCCceeEeC--CCCH-HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHH
Confidence 9997 44444 111 1578 9999999875443446899999999999999999 7888899999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
+|++||+||+|+...++ . ...++.... ++ ..+++++++|+||++ + |++.||++ +++++++.+....
T Consensus 204 ~~~~li~De~~~~~~~~-~-~~~~~~~~~-~~-----~~~~di~~~s~sK~~-~--g~~gG~~~---~~~~~~~~~~~~~ 269 (399)
T 3tqx_A 204 YNALVMVDDSHAVGFIG-E-NGRGTPEYC-GV-----ADRVDILTGTLGKAL-G--GASGGYTS---GHKEIIEWLRNRS 269 (399)
T ss_dssp TTCEEEEECTTTTTTSS-T-TSCCHHHHH-TC-----TTCCSEEEEESSSSS-C--SSCCEEEE---ECHHHHHHHHHHC
T ss_pred cCCEEEEECCccccccC-C-CCCchHHhh-CC-----CCCCcEEEecchHhc-c--cCceEEEE---cCHHHHHHHHHhC
Confidence 99999999999744342 2 122333321 10 123469999999998 5 45669999 5899999988764
Q ss_pred h-h--cccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 304 S-I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 304 ~-~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
. . +.+.+...+.++...++ .. ++.++++++++++++++.+.|+++ |+.+.++.+++ +|+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~- 335 (399)
T 3tqx_A 270 RPYLFSNTVAPVIVATSLKVLE-----------LLKTEGPQLRKQLQENSRYFRAGMEKL-GFQLVPGNHPI-IPVMLG- 335 (399)
T ss_dssp HHHHSSCCCCHHHHHHHHHHHH-----------HHHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSE-EEEEEE-
T ss_pred cceeccCCCcHHHHHHHHHHHH-----------HHhhccHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeC-
Confidence 3 2 23455666666666542 22 446678999999999999999998 88887666654 554443
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
... +..+++.. |.++||.+.|+..+..+.+.+++||+++ .+++++++++++|+++++++
T Consensus 336 -~~~----------~~~~~~~~-l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 336 -DAQ----------LATNMADH-LLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp -CHH----------HHHHHHHH-HHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -CHH----------HHHHHHHH-HHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 221 13444444 5567999998765544456679999997 78899999999999988753
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=268.53 Aligned_cols=313 Identities=14% Similarity=0.136 Sum_probs=225.3
Q ss_pred cHHHHHHHHHHhhhcCCC--CCccC--CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGG--LGAYS--DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~--~~~Y~--~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
|+.+.+++.+.+..+... ...|+ ...+..++|++++++++ ++ ++|++++| ++++..++.+++ ++||.
T Consensus 61 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~~i~~~sG-s~a~~~~~~~~~-~~gd~ 131 (401)
T 1fc4_A 61 HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG------ME-DAILYSSC-FDANGGLFETLL-GAEDA 131 (401)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT------CS-EEEEESCH-HHHHHTTHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhC------CC-cEEEeCCh-HHHHHHHHHHHc-CCCCE
Confidence 788999998877653211 11332 24567899999999984 44 66767666 668999999997 89999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ +.|++.+++....+.++++|++++||||||.+++ +++|.++|++
T Consensus 132 v~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~-~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~ 205 (401)
T 1fc4_A 132 IISDALNHASIIDGVRLCKAKRYRYA--NNDM-QELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADK 205 (401)
T ss_dssp EEEETTCCHHHHHHHHTSCSEEEEEC--TTCH-HHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred EEEcchhHHHHHHHHHHcCCceEEEC--CCCH-HHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC---HHHHHHHHHH
Confidence 9997 34444 111 3578 9999998764332335899999999999999999 7888889999
Q ss_pred CCeEEEeccccc-ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 224 ENLVLLGDEVYQ-QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 224 ~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
+|++||+||+|+ .+.+..+.. +... .++ .. +.+|+++|+||++++++ .||++ +++++++.+...
T Consensus 206 ~~~~li~De~~~~g~~~~~g~~---~~~~-~~~----~~-~~di~~~s~sK~~~~~~---gG~~~---~~~~~~~~l~~~ 270 (401)
T 1fc4_A 206 YDALVMVDDSHAVGFVGENGRG---SHEY-CDV----MG-RVDIITGTLGKALGGAS---GGYTA---ARKEVVEWLRQR 270 (401)
T ss_dssp TTEEEEEECTTTTTTSSTTSCC---HHHH-TTC----TT-CCSEEEEESSSTTCSSS---CEEEE---ECHHHHHHHHHH
T ss_pred cCCEEEEECcccccccCCCCCc---cHHH-cCC----Cc-CCcEEEecchhhccCCC---CEEEE---cCHHHHHHHHHh
Confidence 999999999996 654311222 1111 111 22 24689999999984333 49999 488999988776
Q ss_pred hh---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 303 AS---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 303 ~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
.. .+.+.+.+.|.++.++++ ...+.++.+++++++++++.+.|+++ |+.+. +..+.++|++++
T Consensus 271 ~~~~~~~~~~~~~~~~a~~~~l~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~- 336 (401)
T 1fc4_A 271 SRPYLFSNSLAPAIVAASIKVLE-----------MVEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAIIPVMLG- 336 (401)
T ss_dssp CHHHHHSCCCCHHHHHHHHHHHH-----------HHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEEEEEEE-
T ss_pred CcCceeCCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEEEEEcC-
Confidence 52 245778888888887763 22223467888999999999999988 88877 456667776553
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
... +..++. ..|.++||.+.+|..|+.+.+.+++||+++ .+++++++++++|+++++++
T Consensus 337 -~~~----------~~~~l~-~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 337 -DAV----------VAQKFA-RELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp -CHH----------HHHHHH-HHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred -ChH----------HHHHHH-HHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 211 133444 455667999999998876545678999998 78999999999999988754
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=269.04 Aligned_cols=321 Identities=14% Similarity=0.179 Sum_probs=238.7
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCC----CCCccCC--CCCCH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG----GLGAYSD--SRGIP 110 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~----~~~~Y~~--~~g~~ 110 (463)
|+++++|+.|.++ +. |+.+++++.+.+..... ....|++ ..+..
T Consensus 26 g~~~i~l~~~~~~-------------------------~~-----~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 75 (420)
T 1t3i_A 26 GHPLVYLDNAATS-------------------------QK-----PRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYE 75 (420)
T ss_dssp TEECEECBTTTCC-------------------------CC-----CHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHH
T ss_pred CCceEEecCCccC-------------------------CC-----CHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHH
Confidence 4558999999876 22 88999999888775321 1345654 46778
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHH----hcCCCCEEEEc-----------------cCcee--
Q 041151 111 GVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCV----IRGEGDGVVLL-----------------FHTTW-- 166 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l----~~~~gd~Vlvp-----------------~g~~~-- 166 (463)
++|++++++++ . ++++|++|+|+++++..++.++ + ++||+|+++ .|.++
T Consensus 76 ~l~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (420)
T 1t3i_A 76 AVRNKVAKFIN------ARSPREIVYTRNATEAINLVAYSWGMNNL-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKF 148 (420)
T ss_dssp HHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHTHHHHC-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHcC------CCCCCeEEEcCChHHHHHHHHHHhhhccc-CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEE
Confidence 99999999986 4 5789999999999999999999 7 899999997 23333
Q ss_pred --cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCC
Q 041151 167 --KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 --~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~ 244 (463)
....+.+|+ +.|++++++ ++++|++++|+||||.+++ +++|.++|+++|++||+|++|+.+..
T Consensus 149 v~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~----- 213 (420)
T 1t3i_A 149 VQLDEQESFDL-EHFKTLLSE------KTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY----- 213 (420)
T ss_dssp ECBCTTSSBCH-HHHHHHCCT------TEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----
T ss_pred eccCCCCCcCH-HHHHHhhCC------CceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc-----
Confidence 335567899 999999876 7999999999999999999 78888899999999999999986432
Q ss_pred ccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--------------------
Q 041151 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-------------------- 304 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-------------------- 304 (463)
..++..+ + .++++.|+||.+ |++| +||+++ ++++++.+.....
T Consensus 214 ~~~~~~~--------~---~di~~~s~sK~~-~~~g--~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 1t3i_A 214 PLDVQLI--------D---CDWLVASGHKMC-APTG--IGFLYG---KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPH 276 (420)
T ss_dssp CCCHHHH--------T---CSEEEEEGGGTT-SCTT--CEEEEE---CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTG
T ss_pred cCchhhc--------C---CCEEEEehhhhc-CCCc--eEEEEE---chHHHhhcCceecCCCccccccccccCCCCchh
Confidence 1133322 2 358999999977 7778 999994 8888887765432
Q ss_pred -hcccCChHHHHHHHH-hcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCcccccCC------ceeEEe
Q 041151 305 -IALSPNVPAQIFMGL-MVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCRNVVCNFTE------GAMYSF 374 (463)
Q Consensus 305 -~~~~~~~~~q~~~~~-~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~------g~~~~~ 374 (463)
...+++.+.|.++.. +++ +.. ..++++++++++++++.+.|+++||+.+..+. ++++.|
T Consensus 277 ~~~~~~~~~~~~~a~~~al~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~ 345 (420)
T 1t3i_A 277 KFEAGTPAIAEAIALGAAVD-----------YLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASF 345 (420)
T ss_dssp GGCCSSCCHHHHHHHHHHHH-----------HHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEE
T ss_pred hccCCCccHHHHHHHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEE
Confidence 112456677766543 331 222 24567888999999999999998898887764 666655
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC----CC-CcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK----EG-IFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~----~~-~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
.+ +.. +..++ .+.|.++||.+.+|..|..+ -+ .+++||+++ .+++++++++++|++++
T Consensus 346 -~~--~~~-----------~~~~~-~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 346 -NV--AGL-----------HASDV-ATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp -EE--TTB-----------CHHHH-HHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -EE--CCC-----------CHHHH-HHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 33 211 13344 46678899999999765321 01 458999999 58899999999999988
Q ss_pred HHHHH
Q 041151 448 DEFME 452 (463)
Q Consensus 448 ~~~~~ 452 (463)
+++++
T Consensus 411 ~~~~~ 415 (420)
T 1t3i_A 411 RFFSD 415 (420)
T ss_dssp HHTC-
T ss_pred HHhcC
Confidence 76643
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-31 Score=265.36 Aligned_cols=320 Identities=13% Similarity=0.150 Sum_probs=237.8
Q ss_pred cccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCC------ccCCCCCCH
Q 041151 37 GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLG------AYSDSRGIP 110 (463)
Q Consensus 37 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~------~Y~~~~g~~ 110 (463)
|++++.|+.|.++ +. |+.+++++.+.+.......+ +|.+..+..
T Consensus 21 g~~~i~l~~~~~~-------------------------~~-----~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (406)
T 1kmj_A 21 GLPLAYLDSAASA-------------------------QK-----PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKME 70 (406)
T ss_dssp TEECEECCTTTCC-------------------------CC-----CHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHH
T ss_pred CCceEEecCCccC-------------------------CC-----CHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHH
Confidence 4568999988776 22 78899999888876321111 133456678
Q ss_pred HHHHHHHHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHH----hcCCCCEEEEc-----------------cCcee--
Q 041151 111 GVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCV----IRGEGDGVVLL-----------------FHTTW-- 166 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l----~~~~gd~Vlvp-----------------~g~~~-- 166 (463)
++|++++++++ . ++++|++|+|+++++..++.++ + ++||+|+++ .|.++
T Consensus 71 ~l~~~la~~~~------~~~~~~v~~~~g~t~a~~~~~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 143 (406)
T 1kmj_A 71 NVRKRASLFIN------ARSAEELVFVRGTTEGINLVANSWGNSNV-RAGDNIIISQMEHHANIVPWQMLCARVGAELRV 143 (406)
T ss_dssp HHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHTHHHHC-CTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcC------CCCCCeEEEeCChhHHHHHHHHHhhhhcC-CCCCEEEEecccchHHHHHHHHHHHhCCCEEEE
Confidence 99999999985 4 5689999999999999999999 7 899999997 24444
Q ss_pred --cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCC
Q 041151 167 --KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 --~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~ 244 (463)
...++.+|+ +.|++++++ ++++|++++|+||||.+++ +++|.++|+++|++||+||+|+.+..
T Consensus 144 ~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~----- 208 (406)
T 1kmj_A 144 IPLNPDGTLQL-ETLPTLFDE------KTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH----- 208 (406)
T ss_dssp ECBCTTSCBCG-GGHHHHCCT------TEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-----
T ss_pred EecCCCCCcCH-HHHHHHhcc------CCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC-----
Confidence 234567899 999999876 7999999999999999999 78888899999999999999986422
Q ss_pred ccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--------------------
Q 041151 245 FVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-------------------- 304 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-------------------- 304 (463)
..++... ++++++.|+||.+ |++| +||+++ ++++++.+.....
T Consensus 209 ~~~~~~~-----------~~d~~~~s~~K~~-g~~G--~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (406)
T 1kmj_A 209 PVDVQAL-----------DCDFYVFSGHKLY-GPTG--IGILYV---KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAP 271 (406)
T ss_dssp CCCHHHH-----------TCSEEEEEGGGTT-SCTT--CEEEEE---CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTT
T ss_pred CCccccc-----------CCCEEEEEchhcc-CCCC--cEEEEE---eHHHHhhcCCcccCCCceeecccccccccCCCc
Confidence 1233222 1358899999998 8888 899994 8888887754431
Q ss_pred --hcccCChHHHHHHH-HhcCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCcccccC--CceeEEeeecc
Q 041151 305 --IALSPNVPAQIFMG-LMVNPLKPGDISYEQFVR-ESKGILESLRRRARMMTDGFNSCRNVVCNFT--EGAMYSFPQIR 378 (463)
Q Consensus 305 --~~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~--~g~~~~~~~~~ 378 (463)
...+++.+.|.++. ++++ .... ..++++++++++++++.+.|+++||+.+..+ .++++.| .++
T Consensus 272 ~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~ 340 (406)
T 1kmj_A 272 WRFEAGTPNTGGIIGLGAALE----------YVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAF-NLG 340 (406)
T ss_dssp GGGCCSSCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEE-EET
T ss_pred hhccCCCCCHHHHHHHHHHHH----------HHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEE-EEC
Confidence 11335666676554 3432 1111 2456788899999999999999889988877 7887776 232
Q ss_pred CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 379 LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-----EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-----~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
. .+..++ .+.|.++||.+.+|..|..+ ...+++||+++ .+++++++++++|+++++.+
T Consensus 341 --~-----------~~~~~~-~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 341 --K-----------HHAYDV-GSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp --T-----------CCHHHH-HHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --C-----------CCHHHH-HHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 1 023444 46678889999999865421 11358999999 48999999999999887653
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=260.24 Aligned_cols=304 Identities=13% Similarity=0.074 Sum_probs=217.9
Q ss_pred cHHHHHHHHHHhhhcCC--CCCcc--CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSG--GLGAY--SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~--~~~~Y--~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+.+++.+.+..... ....| +...+..++|++++++++ ++ +.|++++| ++++..++.+++ ++||.
T Consensus 55 ~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~~i~~~sG-t~a~~~~~~~~~-~~gd~ 125 (384)
T 1bs0_A 55 HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG------YS-RALLFISG-FAANQAVIAAMM-AKEDR 125 (384)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT------CS-EEEEESCH-HHHHHHHHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC------CC-cEEEeCCc-HHHHHHHHHHhC-CCCcE
Confidence 78899999888765321 11223 445677899999999984 33 56666666 899999999997 89999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ +.|++.+++. .+++++|++++||||||.+++ +++|+++|++
T Consensus 126 v~~~~~~~~~~~~~~~~~g~~~~~~~--~~d~-~~l~~~l~~~---~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~ 196 (384)
T 1bs0_A 126 IAADRLSHASLLEAASLSPSQLRRFA--HNDV-THLARLLASP---CPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQ 196 (384)
T ss_dssp EEEETTCCHHHHHHHHTSSSEEEEEC--TTCH-HHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC---HHHHHHHHHH
T ss_pred EEEcccccHHHHHHHHHcCCCEEEeC--CCCH-HHHHHHHHhc---CCCCeEEEEeCCCCCCCCccC---HHHHHHHHHH
Confidence 9997 44444 111 2578 9999988751 012688888899999999999 6788889999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
+|++||+||+|+.+.++... .++.. .+ +. ...++++|+||++ +++| ||+++ ++++++.+....
T Consensus 197 ~~~~li~De~~~~~~~~~~~--~~~~~---~~----~~-~~di~~~s~sK~~-~~~G---G~~~~---~~~~~~~l~~~~ 259 (384)
T 1bs0_A 197 HNGWLMVDDAHGTGVIGEQG--RGSCW---LQ----KV-KPELLVVTFGKGF-GVSG---AAVLC---SSTVADYLLQFA 259 (384)
T ss_dssp TTCEEEEECTTTTTTSSGGG--CCHHH---HT----TC-CCSEEEEESSSTT-SSCC---EEEEE---CHHHHHHHHHHC
T ss_pred cCcEEEEECCcccceecCCC--CchHH---hc----CC-CCcEEEeeccchh-hccC---cEEEe---CHHHHHHHHHhc
Confidence 99999999999876552111 12222 12 21 1238999999999 7666 99994 888999887754
Q ss_pred -hh--cccCChHHHHHHHHhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc
Q 041151 304 -SI--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR 378 (463)
Q Consensus 304 -~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~ 378 (463)
.. +.+.+.+.+.++.++++ ... +.++.+++++++++++.+.|+++ |+.+.+ .++.++|+.++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~al~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~ 326 (384)
T 1bs0_A 260 RHLIYSTSMPPAQAQALRASLA-----------VIRSDEGDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVG 326 (384)
T ss_dssp HHHHSSBCCCHHHHHHHHHHHH-----------HHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEE
T ss_pred hhhhcCCCCCHHHHHHHHHHHH-----------HHhccccHHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeC
Confidence 22 23577888877777653 233 44567888999999999999998 787764 44556675543
Q ss_pred CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 379 LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
... +..++. ..|.++||.+.|+..|+.+.+.+++||+++ .+++++++++++|+++
T Consensus 327 --~~~----------~~~~l~-~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 327 --DNS----------RALQLA-EKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp --SHH----------HHHHHH-HHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred --CHH----------HHHHHH-HHHHHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 211 134444 445567999999998875445578999999 4889999999999764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=255.94 Aligned_cols=306 Identities=14% Similarity=0.141 Sum_probs=228.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
++.+++++.+.+. ..|++. ..++++++++++.+.+|.+ ++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 32 ~~~v~~a~~~~~~------~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~-~~gd~vl~~ 101 (386)
T 2dr1_A 32 FPEVLEIMKVQMF------SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGV-SKGGKVLVT 101 (386)
T ss_dssp CHHHHHHTTSCCC------CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHS-CTTCEEEEE
T ss_pred cHHHHHHHhcccc------cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhh-cCCCeEEEE
Confidence 7777776654432 245432 3688889999988888875 56789999999999999999997 899999997
Q ss_pred ---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ ...++.+|+ +.|++++++ .+++++|++++|+||||.+.+ +++|+++|+
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~ 173 (386)
T 2dr1_A 102 IIGAFGKRYKEVVESNGRKAVVLEYEPGKAVKP-EDLDDALRK----NPDVEAVTITYNETSTGVLNP---LPELAKVAK 173 (386)
T ss_dssp ESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCceEEEecCCCCCCCH-HHHHHHHhc----CCCCcEEEEEeecCCcchhCC---HHHHHHHHH
Confidence 34444 334566999 999999964 127899999999999999987 788888999
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH--
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY-- 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~-- 300 (463)
++|++||+||+|+.+.+. .++ ...+.++++.|+||++ +.++ ++||+++ ++++++.+.
T Consensus 174 ~~~~~li~D~a~~~~~~~-----~~~-----------~~~~~di~~~s~sK~~-~~~~-g~G~~~~---~~~~~~~~~~~ 232 (386)
T 2dr1_A 174 EHDKLVFVDAVSAMGGAD-----IKF-----------DKWGLDVVFSSSQKAF-GVPP-GLAIGAF---SERFLEIAEKM 232 (386)
T ss_dssp HTTCEEEEECTTTBTTBC-----CCT-----------TTTTCSEEEEETTSTT-CCCS-SCEEEEE---CHHHHHHHTTC
T ss_pred HcCCeEEEEccccccCcc-----ccc-----------cccCCcEEEEeccccc-cCCC-ceEEEEE---CHHHHHHHhcC
Confidence 999999999999975441 121 2223468999999999 6552 3899995 788887762
Q ss_pred --------------hhh---hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 301 --------------KIA---SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 301 --------------~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
... ...++++.+.|.++..+++ ...++ .++++++++++++++.+.|+++ |
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~----------~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g 301 (386)
T 2dr1_A 233 PERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALR----------IIEKMGGKEKWLEMYEKRAKMVREGVREI-G 301 (386)
T ss_dssp TTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHH----------HHHHTTCHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred CCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 221 2345678888888877763 12222 4567888999999999999998 8
Q ss_pred cccccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcH
Q 041151 362 VVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDM 436 (463)
Q Consensus 362 ~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i 436 (463)
+.+..+++ +.++|+.+ |.+ .+..++... |.++||.+.||..|. ..+++||+++ .+++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~-l~~~gi~v~~~~~~~---~~~~iRi~~~~~~~~~~i 365 (386)
T 2dr1_A 302 LDILAEPGHESPTITAVLT--PPG----------IKGDEVYEA-MRKRGFELAKGYGSV---KEKTFRIGHMGYMKFEDI 365 (386)
T ss_dssp CCBSSCTTCBCSSEEEEEC--CTT----------CCHHHHHHH-HHHTTEECEECCGGG---TTTEEEEECCSSCCHHHH
T ss_pred CeeCcCccccCCceEEEEc--CCC----------CCHHHHHHH-HHHCCeEEecCcccc---CCCEEEEECCCCCCHHHH
Confidence 88877653 56677444 322 124455555 555699999998653 2348999999 699999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 437 ~~~~~~l~~~l~~~~~~ 453 (463)
++++++|+++++++..+
T Consensus 366 ~~~~~~l~~~~~~~~~~ 382 (386)
T 2dr1_A 366 QEMLDNLREVINELKKQ 382 (386)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999887544
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-31 Score=266.98 Aligned_cols=280 Identities=13% Similarity=0.141 Sum_probs=203.3
Q ss_pred CCCccCCCCCCH---HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------
Q 041151 99 GLGAYSDSRGIP---GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------- 161 (463)
Q Consensus 99 ~~~~Y~~~~g~~---~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------- 161 (463)
..+.|+. .|.+ +|+++++++++ . +++++++|+++++..++.+++ ++||.|+++
T Consensus 52 ~~~~Y~~-~~~~~~~~l~~~ia~~~g------~--~~~i~~~~g~~ai~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~ 121 (404)
T 1e5e_A 52 SGYIYTR-LGNPTVSNLEGKIAFLEK------T--EACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHA 121 (404)
T ss_dssp CSCCBTT-TCCHHHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTH
T ss_pred CCccccC-CcChHHHHHHHHHHHHhC------C--CcEEEeCChHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHH
Confidence 3467877 5666 89999999985 2 477888888899999999997 899999997
Q ss_pred ---cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh-CCeEEEecccccc
Q 041151 162 ---FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ-ENLVLLGDEVYQQ 236 (463)
Q Consensus 162 ---~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~-~~~~vi~Deay~~ 236 (463)
.|+++ ..... |+ +.|++.+++ ++++|++++||||||.+++ +++|+++|++ +|++||+||+|+.
T Consensus 122 ~~~~g~~~~~v~~~--d~-~~l~~~i~~------~t~~v~l~~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~ 189 (404)
T 1e5e_A 122 LTKFGIQVDFINTA--IP-GEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCS 189 (404)
T ss_dssp HHHTTCEEEEECTT--ST-THHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTC
T ss_pred HHHcCCEEEEECCC--CH-HHHHHhcCC------CCcEEEEECCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCch
Confidence 24444 11111 77 999998876 8999999999999999997 7888899999 9999999999998
Q ss_pred cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHH-HHHhhhh-h-cccCChH
Q 041151 237 NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVD-EIYKIAS-I-ALSPNVP 312 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~-~-~~~~~~~ 312 (463)
+.+. . ++ . + +++|++.|+||+| +++|+|+ ||+++ ++++++ .+..... . +.+.+.+
T Consensus 190 ~~~~--~---~~-~----~-------~~di~~~S~sK~~-~~~g~ri~G~~~~---~~~~~~~~l~~~~~~~~g~~~~~~ 248 (404)
T 1e5e_A 190 PMIT--N---PV-D----F-------GVDVVVHSATKYI-NGHTDVVAGLICG---KADLLQQIRMVGIKDITGSVISPH 248 (404)
T ss_dssp TTTC--C---GG-G----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHH
T ss_pred hhhC--C---cc-c----c-------CCEEEEEcCcccc-CCCCCCeEEEEEE---CHHHHHHHHHHHHHhCCCCCCCHH
Confidence 7651 1 11 1 1 2468999999999 8899998 99994 888887 8877765 3 4567888
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------cCCCcccccCC----ceeEEe
Q 041151 313 AQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN--------------SCRNVVCNFTE----GAMYSF 374 (463)
Q Consensus 313 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~--------------~~pg~~~~~~~----g~~~~~ 374 (463)
.|.++...++. .. ...+...++.+.+.+.|+ ++||+.+..++ |+++.|
T Consensus 249 ~~~~~~~~l~~-------~~-------~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~ 314 (404)
T 1e5e_A 249 DAWLITRGLST-------LN-------IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITF 314 (404)
T ss_dssp HHHHHHHHHTT-------HH-------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEE
T ss_pred HHHHHHHhHhH-------HH-------HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE
Confidence 88888887752 11 112222333333333333 33556555554 888887
Q ss_pred eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC----------------------CCC--CcEEEEEec
Q 041151 375 PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ----------------------KEG--IFHLRTTIL 430 (463)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~----------------------~~~--~~~lRis~~ 430 (463)
+++ . ..+.+..++++.|| +.+|..||. ..+ .+++|||++
T Consensus 315 -~~~--~-------------~~~~~~~~l~~~~i-~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g 377 (404)
T 1e5e_A 315 -ILK--S-------------GFEGAKKLLDNLKL-ITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVG 377 (404)
T ss_dssp -EET--T-------------HHHHHHHHHHTCSS-SEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECC
T ss_pred -EeC--C-------------CHHHHHHHHHhCCC-ceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeC
Confidence 443 1 22345678889999 667766662 012 469999999
Q ss_pred CCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 431 PAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
. |++++++++|+++++.....+
T Consensus 378 ~--e~~~~li~~l~~al~~~~~~~ 399 (404)
T 1e5e_A 378 I--EDADELIADFKQGLDALLRSH 399 (404)
T ss_dssp S--SCHHHHHHHHHHHHHHHHCC-
T ss_pred C--CCHHHHHHHHHHHHHHHHHhc
Confidence 8 899999999999998766543
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=259.77 Aligned_cols=310 Identities=13% Similarity=0.075 Sum_probs=220.7
Q ss_pred cHHHHHHHHHHhhhcCCC----CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCC
Q 041151 82 PADAIARAKHYLSLTSGG----LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd 156 (463)
++.+++++.+.+...... ...|+...+..++|++++++++ . +++|++|+|++ ++..++..+.. .+||
T Consensus 62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~-~~~i~~~sG~~-a~~~~~~~l~~~~~gd 133 (401)
T 2bwn_A 62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ------K-EAALVFSSAYN-ANDATLSTLRVLFPGL 133 (401)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT------C-SEEEEESCHHH-HHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC------C-CcEEEECCcHH-HHHHHHHHHhcCCCCC
Confidence 668999998887763211 2345666678899999999985 2 57888988876 77777666531 5899
Q ss_pred EEEEc-------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 157 GVVLL-------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 157 ~Vlvp-------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
.|+++ .|.++ +.+ |. +.|++.++.... +++++|++++|+||||.+++ +++|+++
T Consensus 134 ~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~----d~-~~le~~l~~~~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l 203 (401)
T 2bwn_A 134 IIYSDSLNHASMIEGIKRNAGPKRIFRHN----DV-AHLRELIAADDP--AAPKLIAFESVYSMDGDFGP---IKEICDI 203 (401)
T ss_dssp EEEEETTCCHHHHHHHHHSCCCEEEECTT----CH-HHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCC---HHHHHHH
T ss_pred EEEECchhhHHHHHHHHHcCCeEEEEcCC----CH-HHHHHHHHhhcc--CCceEEEEecCcCCCCCcCC---HHHHHHH
Confidence 99997 45555 222 77 999998874100 17899999999999999998 7788889
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++|++||+||+|+.+.|+. .. ..+... .++ . ...+++++||||++ |++| ||++ +++++++.+.
T Consensus 204 ~~~~~~~li~Dea~~~g~~~~-~g-~~~~~~-~~~----~-~~~~i~~~s~sK~~-~~~G---G~~~---~~~~~~~~l~ 268 (401)
T 2bwn_A 204 AEEFGALTYIDEVHAVGMYGP-RG-AGVAER-DGL----M-HRIDIFNGTLAKAY-GVFG---GYIA---ASARMVDAVR 268 (401)
T ss_dssp HHHHTCEEEEECTTTTTTSST-TS-CCHHHH-HTC----G-GGCSEEEEESSSTT-CSCC---EEEE---ECHHHHHHHH
T ss_pred HHHcCCEEEEeccccccccCC-CC-ceeeec-cCc----c-ccCcEEEeechhhc-cCCC---CEEe---cCHHHHHHHH
Confidence 999999999999999665521 11 222211 111 1 12368999999999 7777 9998 5888888887
Q ss_pred hhhh---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 301 KIAS---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 301 ~~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
.... ...+++.+.+.++.++++ +..+ .++++++++++++++.+.|+++ |+.+..+.++ ++|+
T Consensus 269 ~~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~ 335 (401)
T 2bwn_A 269 SYAPGFIFSTSLPPAIAAGAQASIA-----------FLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSH-IVPV 335 (401)
T ss_dssp HHCHHHHTSBCCCHHHHHHHHHHHH-----------HHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSS-CEEE
T ss_pred HhCcCceecCCCCHHHHHHHHHHHH-----------HHHhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCC-eEEE
Confidence 6432 123345577776666653 2222 2567888999999999999988 8888877776 5664
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
. ++.+. +..++...+++++||.+.|+..|+.+.+..++|++++ .+++++++++++|++++++
T Consensus 336 ~--~~~~~----------~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 336 V--IGDPV----------HTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp E--CCCHH----------HHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred E--eCChH----------HHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 4 33221 1345555555688999999988876445568999999 6889999999999988754
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=259.99 Aligned_cols=308 Identities=15% Similarity=0.098 Sum_probs=218.7
Q ss_pred cHHHHHHHHHHhhhcCCC-----CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---C
Q 041151 82 PADAIARAKHYLSLTSGG-----LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~ 153 (463)
|+.+++++.+.+...... ...|.+..+..++|++++++++ +++++|++|+|+++++..++.++.. +
T Consensus 14 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~~~~~~~~ 87 (384)
T 1eg5_A 14 DDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFFTSCATESINWILKTVAETFEK 87 (384)
T ss_dssp CHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGGGEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCCeEEEECCHHHHHHHHHHhhhhhccC
Confidence 889999998887652111 1123344566889999999985 6778999999999999999999851 5
Q ss_pred CCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 154 EGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 154 ~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+||+|+++ .|.++ ...++.+|+ +.|++.+++ ++++|++++|+||||.+++
T Consensus 88 ~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~--- 157 (384)
T 1eg5_A 88 RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKL-EELEKLVDE------DTFLVSIMAANNEVGTIQP--- 157 (384)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCH-HHHHHHCCT------TEEEEEEESBCTTTCBBCC---
T ss_pred CCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCH-HHHHHHhCC------CCeEEEEECCCCCcccccC---
Confidence 89999997 35555 234567899 999999876 7999999999999999999
Q ss_pred HHHHHHHhhhCC--eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC
Q 041151 214 LREILRFCYQEN--LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI 291 (463)
Q Consensus 214 l~~l~~~a~~~~--~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~ 291 (463)
+++|.++|++++ ++||+||+|+.. ..+ .++ ...+.++++.|+||++ |++| +||+++
T Consensus 158 ~~~i~~l~~~~~~~~~li~Dea~~~~----~~~-~~~-----------~~~~~di~~~s~sK~~-g~~G--~G~~~~--- 215 (384)
T 1eg5_A 158 VEDVTRIVKKKNKETLVHVDAVQTIG----KIP-FSL-----------EKLEVDYASFSAHKFH-GPKG--VGITYI--- 215 (384)
T ss_dssp HHHHHHHHHHHCTTCEEEEECTTTTT----TSC-CCC-----------TTTCCSEEEEEGGGGT-SCTT--CEEEEE---
T ss_pred HHHHHHHHHhcCCceEEEEEhhhhcC----Ccc-cCc-----------hhcCCCEEEecHHHhc-CCCc--eEEEEE---
Confidence 577888888999 999999999831 111 122 1112458999999988 8888 799995
Q ss_pred ChhH--HHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 292 PPKT--VDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 292 ~~~~--~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
++++ ...+... ....++++.+.|.++..+++ ...++.++++++++++++++.+.|++ +|+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~ 284 (384)
T 1eg5_A 216 RKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAME----------IAVEELSEAAKHMEKLRSKLVSGLMN-LGAHII 284 (384)
T ss_dssp CTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHH----------HHHHTHHHHHHHHHHHHHHHHHHHHT-TTCEEC
T ss_pred cCCCccccccccCcccccccCCCCChHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEe
Confidence 5554 2222111 01245678888888887763 12334567888999999999999998 588876
Q ss_pred cCC-ce--eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CCcEEE
Q 041151 366 FTE-GA--MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GIFHLR 426 (463)
Q Consensus 366 ~~~-g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~~~lR 426 (463)
.+. ++ .+++ +.++.. +..++. +.|.++||.+.+|..|+... +.+++|
T Consensus 285 ~~~~~~~~~~~~--~~~~~~-----------~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 350 (384)
T 1eg5_A 285 TPLEISLPNTLS--VSFPNI-----------RGSTLQ-NLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350 (384)
T ss_dssp SCTTSBCTTEEE--EECTTC-----------CHHHHH-HHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred CCcccCCCCEEE--EEeCCC-----------CHHHHH-HHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence 553 22 2333 333321 234444 55678999999998875321 136899
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
|+++ .+++++++++++|+++++++++
T Consensus 351 i~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 351 ISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999 7899999999999999877643
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=257.73 Aligned_cols=314 Identities=14% Similarity=0.135 Sum_probs=220.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCC----HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGI----PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~----~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+++++.+++..+......|....|. .+|++.++++++ . +++++++++++++..++.+++ ++||.
T Consensus 80 ~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g------~--~~~i~~~sGs~a~~~al~~l~-~~gd~ 150 (427)
T 2w8t_A 80 DPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG------T--TGAIVFSTGYMANLGIISTLA-GKGEY 150 (427)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHS-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC------C--CceEEecCcHHHHHHHHHHhc-CCCCE
Confidence 7889999988887632223334444454 677777777763 2 245555555679999999997 89999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ +.|++.+++... .++++|++++++||||.+++ +++|.++|++
T Consensus 151 vl~~~~~h~~~~~~~~~~g~~~~~~~--~~d~-~~le~~l~~~~~--~~~~~v~~~~~~n~tG~~~~---l~~l~~l~~~ 222 (427)
T 2w8t_A 151 VILDADSHASIYDGCQQGNAEIVRFR--HNSV-EDLDKRLGRLPK--EPAKLVVLEGVYSMLGDIAP---LKEMVAVAKK 222 (427)
T ss_dssp EEEETTCCHHHHHHHHHSCSEEEEEC--TTCH-HHHHHHHHTSCS--SSCEEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHcCCeeEEeC--CCCH-HHHHHHHHhccC--CCCeEEEEcCCCCCCCCccC---HHHHHHHHHH
Confidence 9997 44444 111 2588 999999875210 15899999999999999998 7888889999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
||+++|+||+|+.+.++ .. ..++... +++ .. +.+|+++||||++ |++| ||++ +++++++.+....
T Consensus 223 ~g~~li~Dea~~~~~~~-~~-g~~~~~~---~~~--~~-~~di~~~s~sK~~-g~~g---G~v~---~~~~l~~~l~~~~ 287 (427)
T 2w8t_A 223 HGAMVLVDEAHSMGFFG-PN-GRGVYEA---QGL--EG-QIDFVVGTFSKSV-GTVG---GFVV---SNHPKFEAVRLAC 287 (427)
T ss_dssp TTCEEEEECTTTTTTSS-TT-SCCHHHH---TTC--TT-CCSEEEEESSSTT-CSCC---EEEE---ECCTTGGGGGGTC
T ss_pred cCCEEEEECCccccccC-CC-CCchHhh---cCC--Cc-CCcEEEecchhhh-ccCC---CEEE---eCHHHHHHHHHhc
Confidence 99999999999988773 21 1233221 211 12 3469999999999 7666 9999 4788888876652
Q ss_pred -h--hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEeeeccC
Q 041151 304 -S--IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFPQIRL 379 (463)
Q Consensus 304 -~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~~~~~ 379 (463)
. .+.+.+.+.+.++.++++ ...+.++++++++++++++.+.|+++ |+.+. ++..+.++|+.+.
T Consensus 288 ~~~~~~~~~~~~~~aa~~~al~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~- 354 (427)
T 2w8t_A 288 RPYIFTASLPPSVVATATTSIR-----------KLMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVMLE- 354 (427)
T ss_dssp HHHHSSCCCCHHHHHHHHHHHH-----------HHTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEES-
T ss_pred ccccccCCCCHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEEC-
Confidence 2 233455555555556653 22223567888999999999999988 88876 4414456675543
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
... +..+++. .|.++||.+.|+..|+.+.+.+++||+++ .+++++++++++|+++++++.+
T Consensus 355 -~~~----------~~~~l~~-~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~~ 417 (427)
T 2w8t_A 355 -DQE----------QAAMMWQ-ALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVGV 417 (427)
T ss_dssp -SHH----------HHHHHHH-HHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred -CHH----------HHHHHHH-HHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 211 1344444 45566999999998877556679999999 5999999999999999877643
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=252.36 Aligned_cols=306 Identities=12% Similarity=0.023 Sum_probs=215.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCc----cCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGA----YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~----Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+++++.+++..+...... |+......+++++++++++ .+ ..|++ +++++++..++.+++ ++||.
T Consensus 75 ~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g------~~-~~i~~-~sGt~a~~~~l~~~~-~~gd~ 145 (409)
T 3kki_A 75 HPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG------FD-ECLLS-QSGWNANVGLLQTIC-QPNTN 145 (409)
T ss_dssp CHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT------CS-EEEEE-SCHHHHHHHHHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC------CC-eEEEe-cchHHHHHHHHHHhc-CCCCE
Confidence 789999999988774322222 3333445678888888774 22 34555 555799999999998 99999
Q ss_pred EEEc-------------cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 158 VVLL-------------FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 158 Vlvp-------------~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
|+++ .|.++ ... ..|+ ++|++.+++. ++++|++++|+||||.+++ +++|.++|++
T Consensus 146 Vl~~~~~~~~~~~~~~~~g~~~~~~~--~~d~-~~le~~l~~~-----~~~~vi~~~~~nptG~~~~---l~~l~~la~~ 214 (409)
T 3kki_A 146 VYIDFFAHMSLWEGARYANAQAHPFM--HNNC-DHLRMLIQRH-----GPGIIVVDSIYSTLGTIAP---LAELVNISKE 214 (409)
T ss_dssp EEEETTSCHHHHHHHHHTTCEEEEEC--TTCH-HHHHHHHHHH-----CSCEEEEESBCTTTCCBCC---HHHHHHHHHH
T ss_pred EEECCCcCHHHHHHHHHcCCeEEEec--CCCH-HHHHHHHHhc-----CCeEEEECCCCCCCCCcCC---HHHHHHHHHH
Confidence 9997 34444 111 1688 9999999874 5899999999999999999 7888899999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
||++||+||+|+.+.++ ... ..+.... ++ . .+..|++.|+||++ +++ .||++ +++++++.+....
T Consensus 215 ~~~~li~De~~~~g~~g-~~g-~~~~~~~-~~----~-~~~di~~~s~sK~~-~~~---gg~v~---~~~~~~~~~~~~~ 279 (409)
T 3kki_A 215 FGCALLVDESHSLGTHG-PNG-AGLLAEL-GL----T-REVHFMTASLAKTF-AYR---AGAIW---CNNEVNRCVPFIS 279 (409)
T ss_dssp HTCEEEEECTTTTTTSS-GGG-CCHHHHH-TC----G-GGCSEEEEESSSTT-CSS---CEEEE---ESSSGGGTHHHHC
T ss_pred cCCEEEEECCccccccC-CCC-Ccchhhc-CC----C-CCCCEEEeecchhh-CCC---ceEEE---ECHHHHHHHHHhC
Confidence 99999999999986552 111 1222211 11 1 12458999999999 655 49998 5888888877653
Q ss_pred h---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCC
Q 041151 304 S---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLP 380 (463)
Q Consensus 304 ~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~ 380 (463)
. .....+...+.++.+.++ ..++.++++++++++++++.+.|+++ |+.+. .++.++|+.+..+
T Consensus 280 ~~~~~~~~~~~~~~aa~~aal~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~ 345 (409)
T 3kki_A 280 YPAIFSSTLLPYEAAGLETTLE-----------IIESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDE 345 (409)
T ss_dssp HHHHHSBCCCHHHHHHHHHHHH-----------HHHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESH
T ss_pred cCccccCCCcHHHHHHHHHHHH-----------HHhcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCH
Confidence 2 223344555555555542 23333568888999999999999988 77765 3566777655422
Q ss_pred hhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 381 PKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
. +..++... |.++||.+.|+..+..+.+.+++||+++ .+++++++++++|++++++
T Consensus 346 ~------------~~~~~~~~-L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 346 R------------NTEKVRDY-LESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp H------------HHHHHHHH-HHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred H------------HHHHHHHH-HHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 1 13344444 5566999998665544456679999998 6889999999999998864
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=251.27 Aligned_cols=300 Identities=11% Similarity=0.119 Sum_probs=222.4
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
.|+.+++++.+.+.. .|++. ..++++++++++.+.+|. +++ +|++|+|+++++..++.+++ ++||+|+
T Consensus 45 ~~~~v~~a~~~~~~~------~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~~~~~~~-~~gd~Vl 113 (393)
T 1vjo_A 45 AHPSVLQAMNVSPVG------HLDPA--FLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEATIANAV-EPGDVVL 113 (393)
T ss_dssp CCHHHHHHHSSCCCC------TTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHC-CTTCEEE
T ss_pred CCHHHHHHHhccccc------ccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHHHHHhcc-CCCCEEE
Confidence 477887777654432 45542 467888888888877775 567 99999999999999999997 8999999
Q ss_pred Ec---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 160 LL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 160 vp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l 184 (393)
T 1vjo_A 114 IGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSL-EELRTALETH-----RPAILALVHAETSTGARQP---LEGVGEL 184 (393)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHHH
T ss_pred EEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCH-HHHHHHHhhC-----CceEEEEeccCCCcceecc---HHHHHHH
Confidence 97 34444 233566899 9999999864 6899999999999999987 7788889
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++|++||+||+|... ..+ ..+ ...+..+++.|+||++ +.++ |+||+++ ++++++.+.
T Consensus 185 ~~~~~~~li~Dea~~~g----~~~-~~~-----------~~~~~di~~~s~sK~l-~~~~-~~G~l~~---~~~~~~~~~ 243 (393)
T 1vjo_A 185 CREFGTLLLVDTVTSLG----GVP-IFL-----------DAWGVDLAYSCSQKGL-GCSP-GASPFTM---SSRAIEKLQ 243 (393)
T ss_dssp HHHHTCEEEEECTTTTT----TSC-CCT-----------TTTTCSEEECCSSSTT-CSCS-SCEEEEE---CHHHHHHHH
T ss_pred HHHcCCEEEEECCcccc----CcC-Ccc-----------cccCccEEEEcCcccc-cCCC-ceEEEEE---CHHHHHHHh
Confidence 99999999999999932 111 121 2223468999999999 6677 9999995 888888875
Q ss_pred hh----h----------------hhcc-cCChHHHHHHHHhcCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Q 041151 301 KI----A----------------SIAL-SPNVPAQIFMGLMVNPLKPGDISYEQFVR-ESKGILESLRRRARMMTDGFNS 358 (463)
Q Consensus 301 ~~----~----------------~~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 358 (463)
.. . .... +++.+.|.++..+++ .... ..++++++++++++++.+.|++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~ 313 (393)
T 1vjo_A 244 RRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALR----------LIAQEGLANCWQRHQKNVEYLWERLED 313 (393)
T ss_dssp TCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 42 0 1123 678888888888763 1112 2567888999999999999999
Q ss_pred CCCcccccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c--CC
Q 041151 359 CRNVVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L--PA 432 (463)
Q Consensus 359 ~pg~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~--~~ 432 (463)
+ |+.+..|++ +.++++ .+|.+ .+..+++..+++++||.+.||..|.. .+++||++ + .+
T Consensus 314 ~-g~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~iRis~~~~~~~ 377 (393)
T 1vjo_A 314 I-GLSLHVEKEYRLPTLTTV--CIPDG----------VDGKAVARRLLNEHNIEVGGGLGELA---GKVWRVGLMGFNSR 377 (393)
T ss_dssp T-TCCBSSCGGGBCSSEEEE--ECCTT----------CCHHHHHHHHHHHHCEECEECCGGGT---TTEEEEECCGGGCS
T ss_pred c-CCcccCCccccCCcEEEE--EcCCC----------CCHHHHHHHHHhhCCEEEecCccccC---CCEEEEeCCccCCh
Confidence 8 888877765 234453 33322 12455555555555999999997753 34899994 4 56
Q ss_pred cCcHHHHHHHHHHHH
Q 041151 433 EEDMPAIMESFKKFN 447 (463)
Q Consensus 433 ~e~i~~~~~~l~~~l 447 (463)
++++++++++|++++
T Consensus 378 ~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 378 KESVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 667999999998875
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=256.78 Aligned_cols=299 Identities=18% Similarity=0.196 Sum_probs=217.5
Q ss_pred cHHHHHHHHHHhhhcC-CCC---CccCC-CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCC
Q 041151 82 PADAIARAKHYLSLTS-GGL---GAYSD-SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~-~~~---~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~g 155 (463)
|+.+++++.+.+.... ... ..|+. ..+..++|++++++++ +++++|++|+|+++++..++.++ + ++|
T Consensus 29 ~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~~~~-~~g 101 (390)
T 1elu_A 29 PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPNTITITDNVTTGCDIVLWGLDW-HQG 101 (390)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGGGEEEESSHHHHHHHHHHHSCC-CTT
T ss_pred CHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcC------CCHHHEEEeCChHHHHHHHHhCCCC-CCC
Confidence 7789999888776521 001 14554 3567899999999985 67789999999999999999999 7 899
Q ss_pred CEEEEc-----------------cCcee---cC---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 156 DGVVLL-----------------FHTTW---KR---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 156 d~Vlvp-----------------~g~~~---~~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
|+|+++ .|.++ +. .++.+|+ +.|++.+++ ++++|++++|+||||.+++
T Consensus 102 d~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~-- 172 (390)
T 1elu_A 102 DEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAA-AVLANHLGP------KTRLVILSHLLWNTGQVLP-- 172 (390)
T ss_dssp CEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHH-HHHHTTCCT------TEEEEEEESBCTTTCCBCC--
T ss_pred CEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchH-HHHHHhcCC------CceEEEEeccccCCceecC--
Confidence 999997 25554 22 5678999 999998876 7999999999999999999
Q ss_pred HHHHHHHHhh----hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 213 NLREILRFCY----QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 213 ~l~~l~~~a~----~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
+++|.++|+ ++|+++|+||+|+.... + ..+ ...+..+++.|+||+++ +|.++||+++
T Consensus 173 -~~~i~~l~~~~~~~~~~~li~Dea~~~g~~----~-~~~-----------~~~~~d~~~~s~~K~~~--~~~g~G~~~~ 233 (390)
T 1elu_A 173 -LAEIMAVCRRHQGNYPVRVLVDGAQSAGSL----P-LDF-----------SRLEVDYYAFTGHKWFA--GPAGVGGLYI 233 (390)
T ss_dssp -HHHHHHHHHHCCSSSCCEEEEECTTTBTTB----C-CCT-----------TTSCCSEEEEESSSTTC--CCTTCEEEEE
T ss_pred -HHHHHHHHhhhhhhcCcEEEEEcccccCCc----C-CCh-----------hhcCCCEEEcccccccc--CCCceEEEEE
Confidence 778888888 99999999999985321 1 111 22234589999999553 4566999995
Q ss_pred cCCChhHHHHHHhhh----------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 041151 289 TNIPPKTVDEIYKIA----------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL 345 (463)
Q Consensus 289 ~~~~~~~~~~l~~~~----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (463)
++++++.+.... . ..++.+...+.++..+++ .+.. ..+.+++++++
T Consensus 234 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~-------~l~~-~~~~~~~~~~~ 302 (390)
T 1elu_A 234 ---HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ-------LHQR-QGTAEERYQAI 302 (390)
T ss_dssp ---CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH-------HHHH-HCCHHHHHHHH
T ss_pred ---CHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHH-------HHHH-cCCHHHHHHHH
Confidence 777777665421 1 123456667776666652 1101 11256688889
Q ss_pred HHHHHHHHHHhhcCCCccccc---CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 041151 346 RRRARMMTDGFNSCRNVVCNF---TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 422 (463)
+++++++.+.|+++||+.+.. +.++++.| +++ .+ .+..++. +.|.++||.+.+|. +.
T Consensus 303 ~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~-~~~--~~----------~~~~~~~-~~l~~~gi~v~~~~------~~ 362 (390)
T 1elu_A 303 CQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVD--SP----------LGHRAIV-QKLEEQRIYLRTIA------DP 362 (390)
T ss_dssp HHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EEC--SS----------SCHHHHH-HHHHHTTEECEEET------TT
T ss_pred HHHHHHHHHHHHhcCCcEEecCccccccEEEE-EcC--CC----------CCHHHHH-HHHHHCCEEEEecC------CC
Confidence 999999999999988888874 46777666 442 11 1234444 44578899999976 23
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
+++||+++ .+++++++++++|+++
T Consensus 363 ~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 363 DCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CeEEEecccCCCHHHHHHHHHHHHhh
Confidence 48999996 8889999999998753
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=257.46 Aligned_cols=302 Identities=13% Similarity=0.087 Sum_probs=211.7
Q ss_pred cHHHHHHHHHHhhhcC------CCCCccCCCCCCHHHHHH-HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC
Q 041151 82 PADAIARAKHYLSLTS------GGLGAYSDSRGIPGVRKE-VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~------~~~~~Y~~~~g~~~lr~~-ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
|+.+++++.+.+.... .....|.+..+..++|++ ++++++ .+ +|++|+|+++++..++.+++ ++
T Consensus 22 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~------~~--~v~~~~g~t~a~~~~~~~~~-~~ 92 (371)
T 2e7j_A 22 TEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG------CD--VARVTNGAREAKFAVMHSLA-KK 92 (371)
T ss_dssp CHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT------SS--EEEEESSHHHHHHHHHHHHC-CT
T ss_pred CHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC------CC--EEEEeCChHHHHHHHHHHHh-CC
Confidence 8889999888765421 012345567788999999 999985 33 99999999999999999997 89
Q ss_pred CCEEEEc-------------cCcee---c--C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 155 GDGVVLL-------------FHTTW---K--R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 155 gd~Vlvp-------------~g~~~---~--~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
||+|+++ .|.++ + . .++.+|+ +.|++.+++.... +++++|++++|+||||.+++ ++
T Consensus 93 gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~l~~~~~~-~~~~~v~~~~~~nptG~~~~---~~ 167 (371)
T 2e7j_A 93 DAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITP-ENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---VK 167 (371)
T ss_dssp TCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCH-HHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---HH
T ss_pred CCEEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCH-HHHHHHHHhhccc-CCeEEEEEECCCCCCcccCC---HH
Confidence 9999997 56655 3 2 3478899 9999999842110 27899999999999999998 57
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 295 (463)
+|.++|+++|++||+||+|+.+.+ ..++..+ + ..++++|+||++ +. +.|+||+++ ++++
T Consensus 168 ~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~--------~---~di~~~s~sK~~-~~-~~~~G~~~~---~~~~ 226 (371)
T 2e7j_A 168 KIAKVCSEYDVPLLVNGAYAIGRM-----PVSLKEI--------G---ADFIVGSGHKSM-AA-SGPIGVMGM---KEEW 226 (371)
T ss_dssp HHHHHHHTTTCCEEEECTTTBTTB-----CCCHHHH--------T---CSEEEEEHHHHS-SC-CSSCEEEEE---CTTT
T ss_pred HHHHHHHHcCCeEEEECccccCCC-----CCChhhc--------C---CCEEEecCCcCC-CC-CCCcEEEEE---echh
Confidence 888889999999999999997543 1233332 2 238999999998 54 459999995 7777
Q ss_pred HHH-HHhhhh--h------cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCccc
Q 041151 296 VDE-IYKIAS--I------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL--RRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 296 ~~~-l~~~~~--~------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~pg~~~ 364 (463)
++. +..... . ..+.+...+.++..+++ +... +.++++ +++++++.+.|+++ |+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----------~~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~ 292 (371)
T 2e7j_A 227 AEIVLRRSEKYKNKEVELLGCTARGATIITLMASFP-----------HVRE--RIKRWDEEVEKARRFAAEMEKL-GIKQ 292 (371)
T ss_dssp TTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHH-----------HHHH--HGGGHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred hhhhccccccCcccccccccCCcCHHHHHHHHHHHH-----------HHHH--HHHHHHHHHHHHHHHHHHHHHc-CcEE
Confidence 666 654432 1 23344444544444442 2222 456677 88899999999988 8888
Q ss_pred ccCC--ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC---CCCCcEEE-EEec---CCcCc
Q 041151 365 NFTE--GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ---KEGIFHLR-TTIL---PAEED 435 (463)
Q Consensus 365 ~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~---~~~~~~lR-is~~---~~~e~ 435 (463)
..+. .+.++|++++ . ..++. +.|.++||.+.| ..|.. ....+++| ++++ .++++
T Consensus 293 ~~~~~~~~~~~~~~~~---~------------~~~~~-~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~~~~~~~ 355 (371)
T 2e7j_A 293 LGDNPHNHDLMFFHAE---V------------LYEIS-KKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTYGLSDEE 355 (371)
T ss_dssp ESSSSCCSSEEEEECH---H------------HHHHH-HHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECTTCCHHH
T ss_pred ecCCCccCceEEEECC---C------------HHHHH-HHHHHCCEEEEe-ccccccccCCCCCceEEEEeeccCCCHHH
Confidence 7663 3456775543 1 33444 445688999988 44322 11145899 9999 58999
Q ss_pred HHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDE 449 (463)
Q Consensus 436 i~~~~~~l~~~l~~ 449 (463)
+++++++|++++++
T Consensus 356 i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 356 VDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=250.39 Aligned_cols=302 Identities=10% Similarity=0.082 Sum_probs=219.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC--CCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS--DSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~--~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~V 158 (463)
|+.+++++.+.+.. .|. +..+..++|++++++++ ++++ +|++|+|+++++..++.+++ ++||+|
T Consensus 31 ~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~g------~~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~v 97 (393)
T 2huf_A 31 PQRVLDAMSRPILG------HLHPETLKIMDDIKEGVRYLFQ------TNNIATFCLSASGHGGMEATLCNLL-EDGDVI 97 (393)
T ss_dssp CHHHHHHTTSCCCC------TTSHHHHHHHHHHHHHHHHHHT------CCCSEEEEESSCHHHHHHHHHHHHC-CTTCEE
T ss_pred CHHHHHHHHhhhcc------CCCHHHHHHHHHHHHHHHHHhC------CCCCcEEEEcCcHHHHHHHHHHHHh-CCCCEE
Confidence 78888877655432 232 22356788888888875 5565 89999999999999999997 899999
Q ss_pred EEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 159 VLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 159 lvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
+++ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|++
T Consensus 98 l~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~ 168 (393)
T 2huf_A 98 LIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSL-DEIRDALLIH-----KPSVLFLTQGDSSTGVLQG---LEGVGA 168 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHHH
T ss_pred EEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCH-HHHHHHHhcc-----CCcEEEEEccCCCccccCC---HHHHHH
Confidence 996 35454 233456899 9999999864 6899999999999999999 778888
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|+++|++||+|++|.... . ...+ ...+..+++.|+||+++|++|+ ||+++ ++++++.+
T Consensus 169 ~~~~~~~~li~D~a~~~~~----~-~~~~-----------~~~~~d~~~~s~sK~l~g~~G~--G~~~~---~~~~~~~~ 227 (393)
T 2huf_A 169 LCHQHNCLLIVDTVASLGG----A-PMFM-----------DRWEIDAMYTGSQKVLGAPPGI--TPVSF---SHRAVERY 227 (393)
T ss_dssp HHHHTTCEEEEECTTTBTT----B-CCCT-----------TTTTCSEEECCSSSTTCCCSSC--EEEEE---CHHHHHHH
T ss_pred HHHHcCCEEEEEcccccCC----C-Ccch-----------hhcCccEEEECCCcccccCCCe--EEEEE---CHHHHHHH
Confidence 9999999999999986421 1 1111 2223458899999986577886 99995 88898888
Q ss_pred Hhhh----hh--------------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHH
Q 041151 300 YKIA----SI--------------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTD 354 (463)
Q Consensus 300 ~~~~----~~--------------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 354 (463)
.+.. .. ..+++...+.++.++++ ....+ .++++++++++++++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~ 297 (393)
T 2huf_A 228 KRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIA----------MACEEGLPALIARHEDCAKRLYR 297 (393)
T ss_dssp HTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHH----------HHHHhCHHHHHHHHHHHHHHHHH
Confidence 7641 10 12344555555555542 12222 55678889999999999
Q ss_pred HhhcCCCcccccCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c
Q 041151 355 GFNSCRNVVCNFTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L 430 (463)
Q Consensus 355 ~L~~~pg~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~ 430 (463)
.|+++ |+.+..+. +++++++.+ +.+ .+..++...+++++||.+.+|..|.. .+++||++ +
T Consensus 298 ~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~L~~~~gi~v~~g~~~~~---~~~~Ri~~~~ 361 (393)
T 2huf_A 298 GLQDA-GFELYADPKDRLSTVTTIKV--PQG----------VDWLKAAQYAMKTYLVEISGGLGPTA---GQVFRIGLMG 361 (393)
T ss_dssp HHHHT-TCCBSSCGGGBCTTEEEEEC--CTT----------CCHHHHHHHHHHHHCEECBCCCGGGT---TTEEEEECCG
T ss_pred HHHHc-CCeeccCccccCCcEEEEEc--CCC----------CCHHHHHHHHHHhCCEEEecCccccc---CCEEEEEccc
Confidence 99988 88877664 345666443 321 12455555555667999999987642 34899999 6
Q ss_pred --CCcCcHHHHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+++++++++++|+++++++++
T Consensus 362 ~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 362 QNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp GGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCC
Confidence 4678899999999999887654
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=252.28 Aligned_cols=362 Identities=14% Similarity=0.100 Sum_probs=240.9
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
=..++..++++.+..+...+.++...|.++++++.|.+.. ++ ..+..+..+++.+++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~yl----------------D~----~~~~~~~~~~~~~~~a~~ 65 (456)
T 2ez2_A 6 EPFRIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYI----------------DL----LTDSGTNAMSDKQWAGMM 65 (456)
T ss_dssp CSSCCCCCCCCCCCCHHHHHHHHHHTTTCGGGSCGGGCSE----------------EC----SCSSSCCCCCHHHHHHHT
T ss_pred CCeeeeeecccCCCCHHHHHHHHHHCCCCcccCCccccee----------------ee----ccccCCccCCHHHHHHhh
Confidence 3467778889988888888888888899999999998732 00 111111123566666554
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
. ....|.+..+..+||++++++++ .+++++|+|+++++..++.+++ ++|| |+.+
T Consensus 66 ----~---~~~~y~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~al~~l~-~~gd-i~~~~~~~~~~~~ 128 (456)
T 2ez2_A 66 ----M---GDEAYAGSENFYHLERTVQELFG--------FKHIVPTHQGRGAENLLSQLAI-KPGQ-YVAGNMYFTTTRY 128 (456)
T ss_dssp ----T---CCCCSSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHC-CTTC-EEEESSCCHHHHH
T ss_pred ----c---chhhcccChhHHHHHHHHHHHhC--------CCcEEEeCCcHHHHHHHHHHhC-CCCC-EeccccccchhHH
Confidence 2 22467777788999999999984 3589999999999999999997 8999 4443
Q ss_pred ----cCcee---cCC-----------CcccChHHHHHHHHHHHHhcCCceeEEEEECCCC-CCccCCCHHHHHHHHHHhh
Q 041151 162 ----FHTTW---KRQ-----------QIGVLIINDLQQSVAQARSKGITVRAMVIINPGN-PTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ----~g~~~---~~~-----------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~N-PtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ +.+ ++.+|+ +.|++++++... ..+++|++++|+| |||.+++.+++++|+++|+
T Consensus 129 ~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~t~--~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~ 205 (456)
T 2ez2_A 129 HQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDL-KKLQKLIDEKGA--ENIAYICLAVTVNLAGGQPVSMANMRAVRELTE 205 (456)
T ss_dssp HHHHTTCEEEECBCGGGGCTTCCCSCTTCBCH-HHHHHHHHHHCG--GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH
T ss_pred HHHHcCCEEEEecccccccccccccccCCCCH-HHHHHHHHhccc--cceeEEEEeccCCCCCCccCCHHHHHHHHHHHH
Confidence 34444 111 368899 999999987200 0249999999999 9999999999999999999
Q ss_pred hCCeEEEecccccc----------cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 223 QENLVLLGDEVYQQ----------NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 223 ~~~~~vi~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+||++||+||+|+. +.+ .+. ++..+...+ .....++++ |++|.+ + +| |+||++. .+
T Consensus 206 ~~~i~li~De~~~~g~~~~~~~~~~~~-~g~---~~~~~~~~~----~~~~d~~~~-S~kk~~-~-~~-~gG~~~~--~~ 271 (456)
T 2ez2_A 206 AHGIKVFYDATRCVENAYFIKEQEQGF-ENK---SIAEIVHEM----FSYADGCTM-SGKKDC-L-VN-IGGFLCM--ND 271 (456)
T ss_dssp HTTCCEEEECTTHHHHHHHHHHHSTTC-TTS---CHHHHHHHH----HTTCSEEEE-ETTTTT-C-CS-SCEEEEE--SC
T ss_pred HcCCeEEEEcccccccccccccccccc-CCc---chhhhhhhh----cccCCEEEE-eCcccC-C-CC-ceeEEEE--CC
Confidence 99999999999986 334 222 221111011 111124554 788864 4 67 7999984 36
Q ss_pred hhHHHHHHhhhhh------cccCChHHHHH-HHHhcCCCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCccc
Q 041151 293 PKTVDEIYKIASI------ALSPNVPAQIF-MGLMVNPLKPGDISYEQFVRES-KGILESLRRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 293 ~~~~~~l~~~~~~------~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~pg~~~ 364 (463)
+++++.+...... ..+.+.....+ +...+ +.+ +...++..++.+.+.+.|++. |+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~--------------~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 336 (456)
T 2ez2_A 272 DEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR--------------EAMQYEYIEHRVKQVRYLGDKLKAA-GVPI 336 (456)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH--------------HHTCHHHHHHHHHHHHHHHHHHHHT-TCCB
T ss_pred HHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHhcC-CCcc
Confidence 8888888765431 11223222222 22221 111 223344455567788888876 8888
Q ss_pred ccCCceeEEeeecc-CChhhHHHHhhcCCCChHHH-----HHHHHHhcCeEeeC-CCCC-------CC--CCCCcEEEEE
Q 041151 365 NFTEGAMYSFPQIR-LPPKAIEAAKRAGKVPDVFY-----CLRLLEATGISTVP-GSGF-------GQ--KEGIFHLRTT 428 (463)
Q Consensus 365 ~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~ll~~~gI~v~p-g~~f-------~~--~~~~~~lRis 428 (463)
..|.+++++|+++. ++.+ . +..++ +..+++++||.+.+ |..| +. .++..++||+
T Consensus 337 ~~p~~~~~~~~~~~~~~~~---------~-~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis 406 (456)
T 2ez2_A 337 VEPVGGHAVFLDARRFCEH---------L-TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLT 406 (456)
T ss_dssp CSSCCSSEEEEEHHHHTTT---------S-CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEE
T ss_pred ccCCCceEEEEEhHHhcCC---------C-ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEE
Confidence 78888999997653 1111 0 12222 44554788999876 4433 11 1234689999
Q ss_pred ec---CCcCcHHHHHHHHHHHHHHHH
Q 041151 429 IL---PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 429 ~~---~~~e~i~~~~~~l~~~l~~~~ 451 (463)
++ .+++++++++++|++++++..
T Consensus 407 ~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 407 IPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99 689999999999999987643
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=260.91 Aligned_cols=312 Identities=12% Similarity=0.071 Sum_probs=213.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHH---HHhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLN---CVIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~---~l~~~~gd~V 158 (463)
|+.+++++.+++.........|.+..+..+||++|++++. | . .+++|++|+|+++++..++. .+. ++| .|
T Consensus 59 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~a~~~~~~~a~~~~-~~~-~v 131 (426)
T 1sff_A 59 HPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSEAVENAVKIARAAT-KRS-GT 131 (426)
T ss_dssp CHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHHHHHHHHHHHHHHH-TCC-EE
T ss_pred CHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHHHHHHHHHHHHHhh-CCC-eE
Confidence 7889999988886532122246666788999999999973 2 2 35899999999999999988 676 777 56
Q ss_pred EEc--------------cCce-------------e---cCC------CcccChHHHHHHHHHHHHhcCCceeEEEEE-CC
Q 041151 159 VLL--------------FHTT-------------W---KRQ------QIGVLIINDLQQSVAQARSKGITVRAMVII-NP 201 (463)
Q Consensus 159 lvp--------------~g~~-------------~---~~~------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p 201 (463)
+++ .|.+ + +.. .+.+|+ +.|++.+++.. .+.++++|+++ +|
T Consensus 132 i~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~-~~l~~~l~~~~-~~~~~~~v~~~p~~ 209 (426)
T 1sff_A 132 IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAI-ASIHRIFKNDA-APEDIAAIVIEPVQ 209 (426)
T ss_dssp EEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHH-HHHHHHHHHTC-CGGGEEEEEECSBC
T ss_pred EEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHH-HHHHHHHHhcc-CCCceEEEEEeccc
Confidence 664 1211 1 111 123688 99999987310 00167888775 67
Q ss_pred CCCCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 202 GNPTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 202 ~NPtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
+| || .+++.+++++|.++|++||++||+||+|.++.+. +. ..++.. . + ..+.+.||||++ +. |
T Consensus 210 ~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~-~~~~~~----~----~---~~~di~s~sK~~-~~-G 273 (426)
T 1sff_A 210 GE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRT-GT-LFAMEQ----M----G---VAPDLTTFAKSI-AG-G 273 (426)
T ss_dssp TT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSGGGG----T----T---SCCSEEEECGGG-GT-S
T ss_pred CC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcc-cc-hhhhhh----c----C---CCCCEEEEcccc-cC-C
Confidence 88 99 8899999999999999999999999999976552 21 111111 1 1 123345999999 75 9
Q ss_pred ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 041151 281 QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS- 358 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 358 (463)
+|+||+++ ++++++.+..... .+++.+.+.|.++.++|+ +... ....++++++++.+.+.|++
T Consensus 274 lriG~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~-----------~~~~-~~~~~~~~~~~~~l~~~l~~~ 338 (426)
T 1sff_A 274 FPLAGVTG---RAEVMDAVAPGGLGGTYAGNPIACVAALEVLK-----------VFEQ-ENLLQKANDLGQKLKDGLLAI 338 (426)
T ss_dssp SCCEEEEE---EHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEE---cHHHHhhhccCCcCcCCCCCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 99999994 7888777754332 466788999998887763 1111 13455566666667666655
Q ss_pred ---CCCcccccCCceeEEeeeccC------ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 359 ---CRNVVCNFTEGAMYSFPQIRL------PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 359 ---~pg~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
++.+....+. ++|+|+++.- |... +..+++ ..|.++||.+.||..| .+++||++
T Consensus 339 ~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~----------~~~~l~-~~l~~~gi~v~~~~~~-----~~~iRi~~ 401 (426)
T 1sff_A 339 AEKHPEIGDVRGL-GAMIAIELFEDGDHNKPDAK----------LTAEIV-ARARDKGLILLSCGPY-----YNVLRILV 401 (426)
T ss_dssp HHTCTTEEEEEEE-TTEEEEEEBGGGCTTSBCHH----------HHHHHH-HHHHHTTEECEEESTT-----SCEEEECC
T ss_pred HHhCCCeEEEEEE-EEEEEEEEecCccccCCChH----------HHHHHH-HHHHHCCcEEecCCCC-----CCEEEEEC
Confidence 3333334455 5678866631 1110 133444 4455679999998764 24899998
Q ss_pred c--CCcCcHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+ .+++++++++++|+++++++
T Consensus 402 ~~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 402 PLTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHH
Confidence 6 78999999999999988764
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=240.71 Aligned_cols=308 Identities=10% Similarity=0.085 Sum_probs=216.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+++++.+.+. .|.+..|..++++++++++.+.+| .++++|++|+|+++++..++.++. ++||+|+++
T Consensus 27 ~~~v~~a~~~~~~-------~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vl~~ 96 (359)
T 1svv_A 27 HPKILDLMARDNM-------TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLIACSLAL-RPWEAVIAT 96 (359)
T ss_dssp CHHHHHHHHHHTT-------CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHHHC-CTTEEEEEE
T ss_pred CHHHHHHHHHHHh-------hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHHHh-CCCCEEEEc
Confidence 7889998887764 366666778999999999988878 567899999999999999999997 899999997
Q ss_pred ---------------cCcee---cCCCcccChHHHHHHHHHHHH-hcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ---------------FHTTW---KRQQIGVLIINDLQQSVAQAR-SKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ---------------~g~~~---~~~~~~~d~~~~l~~~l~~~~-~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ +.+++.+|+ +.|++.+++.. ..+.++++|++++| ||||.+++.+++++|+++|+
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~ 174 (359)
T 1svv_A 97 QLGHISTHETGAIEATGHKVVTAPCPDGKLRV-ADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCK 174 (359)
T ss_dssp TTSHHHHSSTTHHHHTTCCEEEECCTTSCCCH-HHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhcCCCeeEEEeCCCCeecH-HHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHH
Confidence 23344 445788999 99999998720 01113899999999 79999999999999999999
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
++|+++|+||+|..+.++.-........+ ... ..+++.|.+|.. ++ ..+|+++ .++++++.+...
T Consensus 175 ~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~--------~d~~~~s~~K~g-~~--~~~g~l~---~~~~~~~~~~~~ 239 (359)
T 1svv_A 175 EHGLYLFLDGARLASALSSPVNDLTLADI-ARL--------TDMFYIGATKAG-GM--FGEALII---LNDALKPNARHL 239 (359)
T ss_dssp HHTCEEEEECTTHHHHHTSTTCCCCHHHH-HHH--------CSEEEEECTTTT-CS--SCEEEEE---CSGGGCTTHHHH
T ss_pred HhCCEEEEEccchhhhhcCCCcchhhhhh-hhc--------CCEEEEecccCC-CC--CceEEEE---EcccHHHHHHHH
Confidence 99999999999955433110111111111 011 126888999964 43 4579998 488887777654
Q ss_pred h--h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccC
Q 041151 303 A--S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 303 ~--~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~ 379 (463)
. . .....+.....++..+++. . ..++++++++++++++.+.| +.+|+.+..|.+++|+|++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~-----~-------~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~- 305 (359)
T 1svv_A 240 IKQRGALMAKGWLLGIQFEVLMKD-----N-------LFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE- 305 (359)
T ss_dssp HHHTTCCCTTTHHHHHHHHHHTST-----T-------HHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE-
T ss_pred HhcCCcccccchhhHHHHHHHHhh-----h-------hHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC-
Confidence 3 1 1112222233333445531 1 12346778899999999999 556898887888899986543
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++..+++++||.+.+.. ..+.+++||+++ .+++++++++++|+++++++
T Consensus 306 ----------------~~~~~~l~~~~gi~v~~~~----~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 358 (359)
T 1svv_A 306 ----------------NTMIAELNNDFDMYTVEPL----KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST 358 (359)
T ss_dssp ----------------HHHHHHHTTTEECEEEEEE----TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred ----------------HHHHHHHHHhcCEEEEecc----cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence 2344454444499982210 124568999887 78999999999999887653
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=248.47 Aligned_cols=314 Identities=15% Similarity=0.107 Sum_probs=219.8
Q ss_pred cHHHHHHHHHHhhhcCCCCC-ccCC----CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cC
Q 041151 82 PADAIARAKHYLSLTSGGLG-AYSD----SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~-~Y~~----~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~ 153 (463)
|+.+++++.+.+........ .|.. .....++|++++++++ +++++|++|+|+++++..++.++. .+
T Consensus 13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~l~~~~~~ 86 (382)
T 4eb5_A 13 DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN------GGGGTVVFTSGATEANNLAIIGYAMRNAR 86 (382)
T ss_dssp CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CTTEEEEEESSHHHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEcCchHHHHHHHHHHHHhhccC
Confidence 89999999888765211111 2432 2345677888888775 567899999999999999999984 16
Q ss_pred CCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 154 EGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 154 ~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+||+|+++ .|.++ .+.++.+|+ +.|++.+++ ++++|++++|+||||.+++
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~--- 156 (382)
T 4eb5_A 87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDV-SFIDQKLRD------DTILVSVQHANNEIGTIQP--- 156 (382)
T ss_dssp GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCH-HHHHHHCCT------TEEEEECCSBCTTTCBBCC---
T ss_pred CCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCH-HHHHHHhcC------CCeEEEEeccCCCccccCC---
Confidence 89999996 26555 234566899 999999876 7999999999999999998
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++|+++|+++|++ |+|++|+... . ..++... + ..+++.|+||.+ |++| +||+++ ++
T Consensus 157 l~~i~~l~~~~~~~-i~D~a~~~g~----~-~~~~~~~--------~---~di~~~s~sK~~-g~~g--~G~~~~---~~ 213 (382)
T 4eb5_A 157 VEEISEVLAGKAAL-HIDATASVGQ----I-EVDVEKI--------G---ADMLTISSNDIY-GPKG--VGALWI---RK 213 (382)
T ss_dssp HHHHHHHHTTSSEE-EEECTTTBTT----B-CCCHHHH--------T---CSEEEEETGGGT-CCSS--CEEEEE---ET
T ss_pred HHHHHHHHHHCCCE-EEEcchhcCC----c-ccCcccc--------C---CCEEEeehHHhc-CCCc--eEEEEE---cc
Confidence 67888899999999 9999998421 1 1233222 1 348899999987 7777 789886 33
Q ss_pred hH-HHHHHh----hhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC
Q 041151 294 KT-VDEIYK----IAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT 367 (463)
Q Consensus 294 ~~-~~~l~~----~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~ 367 (463)
+. +..+.. ... ...+++...+.++..+++ ...+..++++++++++++++.+.|+++||+.+..+
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 283 (382)
T 4eb5_A 214 EAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAE----------ITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGH 283 (382)
T ss_dssp TCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSC
T ss_pred ccccCceecCCCccccccCCCccHHHHHHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCC
Confidence 32 111100 011 123445555666555542 12234567888899999999999999888887766
Q ss_pred Cc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CCcEEEEE
Q 041151 368 EG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GIFHLRTT 428 (463)
Q Consensus 368 ~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~~~lRis 428 (463)
.+ +.++++.++ .. +..++. +.|.++||.+.+|..|.... +.+++||+
T Consensus 284 ~~~~~~~~~~~~~~--~~-----------~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~ 349 (382)
T 4eb5_A 284 PEKRLPNNVNVRFS--YI-----------EGESIV-LSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT 349 (382)
T ss_dssp SSSBCTTEEEEEET--TS-----------CHHHHH-HHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEE
T ss_pred cccCCCCEEEEEeC--Cc-----------CHHHHH-HHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEE
Confidence 42 334554332 11 234444 44567899999998754310 24689999
Q ss_pred ec--CCcCcHHHHHHHHHHHHHHHHHHhcccc
Q 041151 429 IL--PAEEDMPAIMESFKKFNDEFMEQYEDYR 458 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~~~~~~~~~~ 458 (463)
++ .+++++++++++|+++++++++..++|+
T Consensus 350 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 381 (382)
T 4eb5_A 350 LGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR 381 (382)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99 6899999999999999998887555554
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=249.83 Aligned_cols=302 Identities=10% Similarity=0.080 Sum_probs=214.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
|+.+++++.+.+. +.|+. ..+..++|++++++++ .+.++++|++|+|+++++..++.+++ ++||.|+
T Consensus 16 ~~~v~~a~~~~~~------~~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vi 84 (366)
T 1m32_A 16 SRTVKEAMLFDSC------TWDDDYNIGVVEQIRQQLTALAT----ASEGYTSVLLQGSGSYAVEAVLGSAL-GPQDKVL 84 (366)
T ss_dssp CHHHHHTTCCCCC------TTSHHHHTTTHHHHHHHHHHHHC----SSSSEEEEEEESCHHHHHHHHHHHSC-CTTCCEE
T ss_pred CHHHHHHHhhhhc------CCCHHHHHHHHHHHHHHHHHHhC----CCCcCcEEEEecChHHHHHHHHHHhc-CCCCeEE
Confidence 7788887755321 22321 1578899999999984 22234589999999999999999997 8999877
Q ss_pred Ec---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 160 LL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 160 vp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++ .|.++ ....+.+|+ +.|++++++. +++++|++++|+||||.+++ +++|.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~~----~~~~~v~~~~~~nptG~~~~---l~~i~~l 156 (366)
T 1m32_A 85 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDV-QAIDAILNAD----PTISHIAMVHSETTTGMLNP---IDEVGAL 156 (366)
T ss_dssp EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCH-HHHHHHHHHC----TTCCEEEEESEETTTTEECC---HHHHHHH
T ss_pred EEeCCCccHHHHHHHHHhCCceEEEeCCCCCCCCH-HHHHHHHhcC----CCeEEEEEecccCCcceecC---HHHHHHH
Confidence 64 34444 234556899 9999999861 14789999999999999999 6788889
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|++||++||+||+|+.... + .++ ...+..+++.|+||++++++| +||+++ ++++++.+.
T Consensus 157 ~~~~~~~li~Dea~~~~~~----~-~~~-----------~~~~~di~~~s~~K~~~~~~g--~G~~~~---~~~~~~~~~ 215 (366)
T 1m32_A 157 AHRYGKTYIVDAMSSFGGI----P-MDI-----------AALHIDYLISSANKCIQGVPG--FAFVIA---REQKLAACK 215 (366)
T ss_dssp HHHHTCEEEEECTTTTTTS----C-CCT-----------TTTTCSEEEEESSSTTCCCSS--EEEEEE---EHHHHTTCT
T ss_pred HHHcCCEEEEECCccccCc----C-ccc-----------cccCccEEEecCcccccCCCc--eEEEEE---CHHHHHhhc
Confidence 9999999999999985432 1 121 112245899999998744444 799995 777776654
Q ss_pred hhh------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Q 041151 301 KIA------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 301 ~~~------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
... . ..++.+...+.++.++++ ....+ .++++++++++++++.+.|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~~l~~~L~~~ 285 (366)
T 1m32_A 216 GHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALK----------ELAKEGGVAARHQRYQQNQRSLVAGMRAL 285 (366)
T ss_dssp TCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH----------HHHHccCHhHHHHHHHHHHHHHHHHHHHC
Confidence 321 0 024566677766766653 22233 4567888999999999999988
Q ss_pred CCcccccC---CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcC
Q 041151 360 RNVVCNFT---EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEE 434 (463)
Q Consensus 360 pg~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e 434 (463)
|+.+..+ .+++++|+.++-..+ .+..++. +.|.++||.+.+|..|+ .+++|++++ .+++
T Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~l~~~gi~v~~~~~~~----~~~iRi~~~~~~~~~ 349 (366)
T 1m32_A 286 -GFNTLLDDELHSPIITAFYSPEDPQ----------YRFSEFY-RRLKEQGFVIYPGKVSQ----SDCFRIGNIGEVYAA 349 (366)
T ss_dssp -TCCBSSCGGGBCSSEEEEECCCCTT----------CCHHHHH-HHHHHTTEECEECCCSS----SCEEEEECCSSCCHH
T ss_pred -CCeeccCchhcCceEEEEEcCccCC----------CCHHHHH-HHHHHCCEEEECCcCCC----CCEEEEecCCCCCHH
Confidence 8877654 366788855431001 1234444 44566799999998773 348999999 5789
Q ss_pred cHHHHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKFNDE 449 (463)
Q Consensus 435 ~i~~~~~~l~~~l~~ 449 (463)
++++++++|++++++
T Consensus 350 ~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 350 DITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887643
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=248.78 Aligned_cols=302 Identities=9% Similarity=0.060 Sum_probs=215.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
+|+.+++++.+.+... ..+.......++++.++++++ .+.++++|++|+|+++++. ++..++ ++||+|++
T Consensus 13 ~~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~la~~~~----~~~~~~~v~~~~g~t~al~-~~~~~~-~~gd~vi~ 82 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGF----TSKEFVEALAYSLKGLRYVMG----ASKNYQPLIIPGGGTSAME-SVTSLL-KPNDKILV 82 (384)
T ss_dssp CCHHHHHHTTCCSCCT----TSHHHHHHHHHHHHHHHHHHT----CCTTSEEEEEESCHHHHHH-HGGGGC-CTTCEEEE
T ss_pred CCHHHHHHhhcccccc----ccHHHHHHHHHHHHHHHHHhC----CCCCCcEEEEcCCcHHHHH-HHHhhc-CCCCEEEE
Confidence 3788887776544321 111112334566777777664 3322389999999999999 999987 89999999
Q ss_pred c---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|.++|
T Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~ 153 (384)
T 3zrp_A 83 VSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKP-GEVEEEVRKS-----EYKLVALTHVETSTGVREP---VKDVINKI 153 (384)
T ss_dssp ECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCH-HHHHHHHHHS-----CEEEEEEESEETTTTEECC---HHHHHHHH
T ss_pred ecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCH-HHHHHHHHhC-----CCcEEEEeCCCCCCceECc---HHHHHHHH
Confidence 6 35554 334567899 9999999874 6999999999999999998 77788899
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH--
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI-- 299 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l-- 299 (463)
++||++||+|++|+.... ..++ ...+..+++.|+||+++|++| +||+++ ++++++.+
T Consensus 154 ~~~~~~li~D~a~~~~~~-----~~~~-----------~~~~~d~~~~s~~K~~~~~~g--~g~~~~---~~~~~~~~~~ 212 (384)
T 3zrp_A 154 RKYVELIVVDGVSSVGAE-----EVKA-----------EEWNVDVYLTASQKALGSAAG--LGLLLL---SPKALSILDS 212 (384)
T ss_dssp GGGEEEEEEECTTTTTTS-----CCCT-----------TTTTCSEEEEETTSTTCCCSS--EEEEEE---CHHHHHHHHH
T ss_pred HhcCCEEEEECcccccCc-----cccc-----------cccCCCEEEecCcccccCCCc--eEEEEE---CHHHHHHhcC
Confidence 999999999999985432 1111 212245899999999854445 899994 88887777
Q ss_pred -----------Hhhhh----------hc-ccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 041151 300 -----------YKIAS----------IA-LSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGF 356 (463)
Q Consensus 300 -----------~~~~~----------~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L 356 (463)
..... .. .+.+...+.++..+++ ....+ +++++++++++++++.+.|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L 282 (384)
T 3zrp_A 213 QNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFR----------LIEKEGIENRIKRHTMVASAIRAGL 282 (384)
T ss_dssp CCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHH----------HHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 22221 11 2445555555555542 12222 5678889999999999999
Q ss_pred hcCCCcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 357 NSCRNVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 357 ~~~pg~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
+++ |+.+..+. +++++|+.++ .. +..++. +.|.++||.+.+|..+.. +++||++.
T Consensus 283 ~~~-g~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~-~~l~~~gi~v~~g~~~~~----~~iRi~~~~~ 343 (384)
T 3zrp_A 283 EAL-GLEIVARRPESYSNTVTGVILK--VA-----------DPQKVL-AGTVNEGVEFAPGVHPAF----KYFRIGHMGW 343 (384)
T ss_dssp HHT-TCCBSCSSGGGBCSSEEEEECS--SS-----------CHHHHH-HHHHTTTCCCEECCCTTC----CEEEEECCSS
T ss_pred HHC-CCeEccCcccccCccEEEEECC--CC-----------CHHHHH-HHHHHCCEEEecCCCCCc----CEEEEecccc
Confidence 998 88887776 4566664443 21 234444 456667999999875432 58999988
Q ss_pred CCcCcHHHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+++++++++++|+++++++.
T Consensus 344 ~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 344 VTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcC
Confidence 788999999999999988764
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-29 Score=248.62 Aligned_cols=303 Identities=9% Similarity=0.015 Sum_probs=215.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+++++.+.+.. ...|....+..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 21 ~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~t~g~t~a~~~~~~~~~-~~gd~Vl~~ 89 (392)
T 2z9v_A 21 YPEVLRGLGRTVLY----DYDPAFQLLYEKVVDKAQKAMR------LSNKPVILHGEPVLGLEAAAASLI-SPDDVVLNL 89 (392)
T ss_dssp CHHHHHHTTSCCCC----TTSHHHHHHHHHHHHHHHHHTT------CSSCCEEESSCTHHHHHHHHHHHC-CTTCCEEEE
T ss_pred CHHHHHHHhccccc----cccHHHHHHHHHHHHHHHHHhC------CCCCEEEEeCCchHHHHHHHHHhc-CCCCEEEEe
Confidence 78888877665443 1122223356788888888875 567899999999999999999997 899999986
Q ss_pred ---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ ...++.+|+ +.|++.+++ .+++++|++++|+||||.+++ +++|.++|+
T Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~----~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~ 161 (392)
T 2z9v_A 90 ASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDP-QAVADMLKA----HPEITVVSVCHHDTPSGTINP---IDAIGALVS 161 (392)
T ss_dssp ESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCH-HHHHHHHHH----CTTCCEEEEESEEGGGTEECC---HHHHHHHHH
T ss_pred cCCcccHHHHHHHHHcCCceEEeeCCCCCCCCH-HHHHHHHhc----CCCCcEEEEeccCCCCceecc---HHHHHHHHH
Confidence 24444 233456899 999999964 116899999999999999998 678888999
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 302 (463)
++|++||+|++|+.... ..++.. + +..+++.|+||+++|++| +||+++ ++++++.+...
T Consensus 162 ~~~~~li~D~a~~~g~~-----~~~~~~----~-------~~d~~~~s~sK~~~~~~g--~G~l~~---~~~~~~~l~~~ 220 (392)
T 2z9v_A 162 AHGAYLIVDAVSSFGGM-----KTHPED----C-------KADIYVTGPNKCLGAPPG--LTMMGV---SERAWAKMKAN 220 (392)
T ss_dssp HTTCEEEEECTTTBTTB-----SCCGGG----G-------TCSEEEECSSSTTCCCSC--CEEEEE---CHHHHHHHHTC
T ss_pred HcCCeEEEEcccccCCc-----cccccc----c-------cceEEEecCcccccCCCc--eeEEEE---CHHHHHHhhhc
Confidence 99999999999984221 112211 1 134889999997755666 499995 88888888642
Q ss_pred h--------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCC
Q 041151 303 A--------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCR 360 (463)
Q Consensus 303 ~--------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~p 360 (463)
. . ...+.+...+.++..+++ ....+ .++++++++++++++.+.|+++
T Consensus 221 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~- 289 (392)
T 2z9v_A 221 PLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALD----------LYLNEGPEAVWARHALTAKAMRAGVTAM- 289 (392)
T ss_dssp TTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHH----------HHHhccHHHHHHHHHHHHHHHHHHHHHc-
Confidence 1 1 123344555555555542 22333 5667888999999999999988
Q ss_pred CcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c--CCc
Q 041151 361 NVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L--PAE 433 (463)
Q Consensus 361 g~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~--~~~ 433 (463)
|+.+..|. .+.++|+.+ |.+. +..++...+.+++||.+.+|..+. ..+++||++ + .++
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~--~~~~----------~~~~l~~~L~~~~gi~v~~g~~~~---~~~~lRi~~~~~~~~~ 354 (392)
T 2z9v_A 290 GLSVWAASDSIASPTTTAVRT--PDGV----------DEKALRQAARARYGVVFSSGRGET---LGKLTRIGHMGPTAQP 354 (392)
T ss_dssp TCCBSSSSGGGBCTTEEEEEC--CTTC----------CHHHHHHHHHHHHCEECEECCGGG---TTTEEEEECCGGGCSH
T ss_pred CCeeccCCccccCCceEEEEC--CCCC----------CHHHHHHHHHhcCCEEEecCCCCC---CCCeEEEeCcccccCH
Confidence 88877633 355666443 3221 244555555544599999988653 235899995 4 789
Q ss_pred CcHHHHHHHHHHHHHHH
Q 041151 434 EDMPAIMESFKKFNDEF 450 (463)
Q Consensus 434 e~i~~~~~~l~~~l~~~ 450 (463)
+++++++++|+++++++
T Consensus 355 ~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 355 IYAIAALTALGGAMNAA 371 (392)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999998764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-29 Score=248.52 Aligned_cols=305 Identities=12% Similarity=0.109 Sum_probs=220.0
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCC-C-CCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSD-S-RGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~-~-~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
+++.+++++.+.+.. .|.+ . ....++|++++++++ .+++ +|++|+|+++++..++.+++ ++||+
T Consensus 29 ~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~al~~~~~~~~-~~gd~ 95 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS------NFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLL-EEGDR 95 (396)
T ss_dssp CCHHHHHHTTSCCCC------TTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHC-CTTCE
T ss_pred CCHHHHHHhcccccc------CCChhHHHHHHHHHHHHHHHhC------CCCCcEEEECCcHHHHHHHHHHHhc-CCCCe
Confidence 377777766544321 2432 1 236789999999986 5677 89999999999999999997 89999
Q ss_pred EEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHH
Q 041151 158 VVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 218 (463)
Q Consensus 158 Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~ 218 (463)
|+++ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|.
T Consensus 96 vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~ 166 (396)
T 2ch1_A 96 VLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSL-ETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LEGVG 166 (396)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHH
T ss_pred EEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCH-HHHHHHHHhC-----CCCEEEEECCCCCCceecC---HHHHH
Confidence 9997 35454 334567999 9999999864 6899999999999999999 77888
Q ss_pred HHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 219 RFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
++|+++|++||+||+|.... .+ ..+ ...+..+++.|++|++++.+| +||+++ ++++++.
T Consensus 167 ~l~~~~~~~li~Dea~~~g~----~~-~~~-----------~~~~~d~~~~s~~K~~~~~~g--~g~~~~---~~~~~~~ 225 (396)
T 2ch1_A 167 QICHQHDCLLIVDAVASLCG----VP-FYM-----------DKWEIDAVYTGAQKVLGAPPG--ITPISI---SPKALDV 225 (396)
T ss_dssp HHHHHTTCEEEEECTTTBTT----BC-CCT-----------TTTTCCEEECCCC-CCCCCSS--CEEEEE---CHHHHHH
T ss_pred HHHHHcCCEEEEEccccccC----Cc-cch-----------hhcCcCEEEEcCCccccCCCC--eEEEEE---CHHHHHh
Confidence 89999999999999998321 11 122 111123677999998754445 699985 7788887
Q ss_pred HHhhh-----------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHH
Q 041151 299 IYKIA-----------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMT 353 (463)
Q Consensus 299 l~~~~-----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 353 (463)
+.... . ...+++...|.++.++++ ... ...++++++++++++++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~ 295 (396)
T 2ch1_A 226 IRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALA----------QIAEEGLENQIKRRIECAQILY 295 (396)
T ss_dssp HHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHH
T ss_pred hhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHH
Confidence 75420 1 123466777877777763 111 235667888999999999
Q ss_pred HHhhcCCCcccccCCce----eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 354 DGFNSCRNVVCNFTEGA----MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 354 ~~L~~~pg~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+.|+++ |+.+..++++ .++++. +|.+ .+..++...+++++||.+.+|..+. ..+++||++
T Consensus 296 ~~L~~~-g~~~~~~~~~~~~~~~~~~~--~~~~----------~~~~~~~~~L~~~~gi~v~~g~~~~---~~~~iRi~~ 359 (396)
T 2ch1_A 296 EGLGKM-GLDIFVKDPRHRLPTVTGIM--IPKG----------VDWWKVSQYAMNNFSLEVQGGLGPT---FGKAWRVGI 359 (396)
T ss_dssp HHHHHH-TCCBSSCSGGGBCTTEEEEE--CCTT----------CCHHHHHHHHHHHHCBCCBCCCGGG---TTTEEEEEC
T ss_pred HHHHHC-CCeeccCCccccCCceEEEE--cCCC----------CCHHHHHHHHHHhCCEEEecCcccc---CCCEEEEEC
Confidence 999988 8888877664 255643 3322 1245565565666799999987543 234899999
Q ss_pred -c--CCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 430 -L--PAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 430 -~--~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
+ .+++++++++++|+++++++...|
T Consensus 360 ~~~~~~~e~i~~~~~~l~~~l~~~~~~~ 387 (396)
T 2ch1_A 360 MGECSTVQKIQFYLYGFKESLKATHPDY 387 (396)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCccE
Confidence 4 478899999999999998775443
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=241.81 Aligned_cols=324 Identities=12% Similarity=0.079 Sum_probs=212.8
Q ss_pred HHHHhcc-cceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCH
Q 041151 32 ELQKEGK-KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIP 110 (463)
Q Consensus 32 ~~~~~~~-~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~ 110 (463)
.+++.|. +++|++.|.|+. |. |+.+++++. .+ ..| .
T Consensus 21 ~i~~~g~~~v~~~~~~~~~~------------------------~~-----~~~v~~a~~----~~----~~~------~ 57 (374)
T 2aeu_A 21 ILNEKGRDALYDLSGLSGGF------------------------LI-----DEKDKALLN----TY----IGS------S 57 (374)
T ss_dssp HHHHTCGGGCEECSSCCCCC------------------------CC-----CHHHHHHHT----ST----THH------H
T ss_pred HHhccCccceeeecccCCCC------------------------CC-----CHHHHHHHH----Hh----cCc------h
Confidence 3456787 899999987664 43 888888775 11 111 3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c-------------Ccee-cCCCccc
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F-------------HTTW-KRQQIGV 173 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~-------------g~~~-~~~~~~~ 173 (463)
.++++++++..+.+|.+ +++++++++|+++++..++.++ +||+|+++ + |+++ .. .
T Consensus 58 ~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v----~ 129 (374)
T 2aeu_A 58 YFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAKYFES----D 129 (374)
T ss_dssp HHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE----S
T ss_pred HHHHHHHHHHHHHhCCC-CcceEEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe----C
Confidence 45566666665555643 4579999999999999999977 89999997 2 2222 11 5
Q ss_pred ChHHHHHHHHHHHHhcCCceeE-EEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRA-MVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~-i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
|+ +.|++. ++ ++++ |++++||||||. +.+++++|.++|++||++||+||+|..+..+.... .+....
T Consensus 130 d~-~~l~~~-~~------~~~~~v~~~~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~~~~- 197 (374)
T 2aeu_A 130 KV-GEILNK-ID------KDTLVIITGSTMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQ-PPALKL- 197 (374)
T ss_dssp CH-HHHHTT-CC------TTEEEEEECBCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTC-CCHHHH-
T ss_pred CH-HHHHhc-CC------CccEEEEEccCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccccc-CCcccc-
Confidence 88 998887 43 7899 889999999997 77899999999999999999999998763100001 112221
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
. ..++++|+||++ +|+|+||++ +++++++.+.+... ...+++.+.|.++..+++... .
T Consensus 198 -------~---~di~~~S~sK~l---~g~~~G~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~-----~ 256 (374)
T 2aeu_A 198 -------G---ADLVVTSTDKLM---EGPRGGLLA---GKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN-----L 256 (374)
T ss_dssp -------T---CSEEEEETTSSS---SSCSCEEEE---EEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC-----H
T ss_pred -------C---CcEEEecCcccc---cCcceEEEE---ECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHh-----H
Confidence 2 248889999987 478999998 58899999987765 445678888888887764211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSC---RNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG 407 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 407 (463)
+...+..+..+..++++++.+.+.|..+ +|+.+. .+.|.++.|.++ +.. .+. .++.+++..+++++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~--~~~-~~~------~~~~~~~~~ll~~~g 327 (374)
T 2aeu_A 257 ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK--DDT-INI------KKLIEIGFNLLKNYG 327 (374)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES--SHH-HHH------HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecc--ccc-ccc------cchHHHHHHHHHhCC
Confidence 0011111111111111245556666554 356654 455656666432 221 000 012346667888899
Q ss_pred eEeeCCCCCCCCCCCcEEEEEecC---CcCcHHHHHHHHHHHHHHH
Q 041151 408 ISTVPGSGFGQKEGIFHLRTTILP---AEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 408 I~v~pg~~f~~~~~~~~lRis~~~---~~e~i~~~~~~l~~~l~~~ 450 (463)
|.+.||..|.. +.+++||+++. .+.+++++.+.|+++++++
T Consensus 328 V~v~~g~~~~~--~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 328 IITITVAGMPG--ASKSLRIDLTSRDAERIDDNYIIKAIVESIKMA 371 (374)
T ss_dssp EECSTTSSSCS--SCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCC--CCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999987743 34589999982 2334777777777766654
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-29 Score=251.23 Aligned_cols=314 Identities=13% Similarity=0.094 Sum_probs=220.4
Q ss_pred hcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHH
Q 041151 36 EGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKE 115 (463)
Q Consensus 36 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 115 (463)
+|+.++||+.|.|.. +... .++.+.+++.+.+.........|+ ..+..+++++
T Consensus 26 ~g~~~ld~~~~~~~~----------------------~~g~----~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~l~~~ 78 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVN----------------------SLGH----AYPKLTEALKEQVEKLLHVSNLYE-NPWQEELAHK 78 (375)
T ss_dssp TCCEEEESSHHHHTC----------------------TTCB----SCHHHHHHHHHHHHHCSCCCTTBC-CHHHHHHHHH
T ss_pred CCCEEEEcCCccccc----------------------ccCC----CCHHHHHHHHHHHHhccccCcccC-CHHHHHHHHH
Confidence 567789999887742 0110 278899999888765322234574 3467889988
Q ss_pred HHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH--hc---CCC-CEEEEc---cCcee---------c--C-------
Q 041151 116 VAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV--IR---GEG-DGVVLL---FHTTW---------K--R------- 168 (463)
Q Consensus 116 ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~~---~~g-d~Vlvp---~g~~~---------~--~------- 168 (463)
++++++ + +++|++|+|+++++..++.++ .. +|| |+|+++ +.... . .
T Consensus 79 la~~~g------~-~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 151 (375)
T 2eh6_A 79 LVKHFW------T-EGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV 151 (375)
T ss_dssp HHHTSS------S-CEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC
T ss_pred HHhhcC------C-CCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC
Confidence 888863 3 489999999999999998753 22 578 999997 11111 0 0
Q ss_pred CCcc----cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCC
Q 041151 169 QQIG----VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243 (463)
Q Consensus 169 ~~~~----~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~ 243 (463)
.+.. .|+ +.|++++++ ++++|++++|+||||.+ .+.+++++|+++|+++|+++|+||+|.++.+. +.
T Consensus 152 ~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~ 223 (375)
T 2eh6_A 152 PGFSYAKLNDI-DSVYKLLDE------ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRT-GE 223 (375)
T ss_dssp SSEEEECTTCH-HHHHTTCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS
T ss_pred CCceeCCCchH-HHHHHHhcC------CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCC-Cc
Confidence 0122 588 999988875 79999999999999998 56888999999999999999999999975431 11
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcC
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVN 322 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~ 322 (463)
..++.. + +....++ ||||.+ + +|+|+||+++ ++++++.+.... ..+++++.+.|.++.++|+
T Consensus 224 -~~~~~~----~----~~~~d~~---s~SK~~-~-~g~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 286 (375)
T 2eh6_A 224 -FYAYQH----F----NLKPDVI---ALAKGL-G-GGVPIGAILA---REEVAQSFTPGSHGSTFGGNPLACRAGTVVVD 286 (375)
T ss_dssp -SSGGGG----G----TCCCSEE---EECGGG-G-TTSCCEEEEE---EHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHH
T ss_pred -chhhhh----c----CCCCCEE---EEcccc-c-CCCCeEEEEE---cHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 112221 1 2111222 889999 6 6999999995 777777765532 2356778888888877653
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHH
Q 041151 323 PLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (463)
... +.+++++++++++.+.|++++. ...+ ..++++|++++ . +..+++..
T Consensus 287 -----------~~~---~~~~~~~~~~~~l~~~L~~~~~-~~~~-~~g~~~~~~~~--~------------~~~~~~~~- 335 (375)
T 2eh6_A 287 -----------EVE---KLLPHVREVGNYFKEKLKELGK-GKVK-GRGLMLGLELE--R------------ECKDYVLK- 335 (375)
T ss_dssp -----------HHH---HHHHHHHHHHHHHHHHHHHTTS-SEEE-EETTEEEEECS--S------------CCHHHHHH-
T ss_pred -----------HHH---HHHHHHHHHHHHHHHHHHHHhc-CCce-EEEEEEEEEEc--C------------cHHHHHHH-
Confidence 111 5677788889999999988743 3333 34567775543 1 13455444
Q ss_pred HHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 403 LEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 403 l~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
|.++||.+.|+. .+++||+++ .+++++++++++|+++
T Consensus 336 l~~~gi~~~~~~-------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 336 ALEKGLLINCTA-------GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCEEecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 556899999852 348999977 7889999999999875
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=246.92 Aligned_cols=297 Identities=11% Similarity=0.090 Sum_probs=213.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
|+.+++++.+.+.. . ..|....+..++|++++++++ +++++|++|+|+++++..++.+++ ++||+|+++
T Consensus 13 ~~~v~~a~~~~~~~---~-~~~~~~~~~~~l~~~la~~~g------~~~~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~ 81 (352)
T 1iug_A 13 HPKALEALARPQLH---H-RTEAAREVFLKARGLLREAFR------TEGEVLILTGSGTLAMEALVKNLF-APGERVLVP 81 (352)
T ss_dssp CHHHHHHHHSCCCC---T-TSHHHHHHHHHHHHHHHHHHT------CSSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred CHHHHHHhccCCCC---c-cCHHHHHHHHHHHHHHHHHhC------CCCceEEEcCchHHHHHHHHHhcc-CCCCeEEEE
Confidence 88888888766542 1 122223456789999999885 567899999999999999999997 899999996
Q ss_pred ---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 ---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 ---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|.++ ...++.+|+ +.|++ + ++++|++++|+||||.+++ +++|.++|+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~---~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~ 148 (352)
T 1iug_A 82 VYGKFSERFYEIALEAGLVVERLDYPYGDTPRP-EDVAK---E------GYAGLLLVHSETSTGALAD---LPALARAFK 148 (352)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCT-TTSCC---S------SCSEEEEESEETTTTEECC---HHHHHHHHH
T ss_pred eCCchhHHHHHHHHHcCCceEEEeCCCCCCCCH-HHHhc---c------CCcEEEEEEecCCcceecC---HHHHHHHHH
Confidence 35555 233456788 88877 3 7899999999999999998 678888999
Q ss_pred hC--CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH--
Q 041151 223 QE--NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE-- 298 (463)
Q Consensus 223 ~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~-- 298 (463)
++ |++||+|++|+.... + ..+.. + +..+++.|+||++++++| +||+++ ++++++.
T Consensus 149 ~~~~~~~li~D~a~~~~~~----~-~~~~~----~-------~~d~~~~s~~K~~~~~~g--~G~~~~---~~~~~~~~~ 207 (352)
T 1iug_A 149 EKNPEGLVGADMVTSLLVG----E-VALEA----M-------GVDAAASGSQKGLMCPPG--LGFVAL---SPRALERLK 207 (352)
T ss_dssp HHCTTCEEEEECTTTBTTB----C-CCSGG----G-------TCSEEEEESSSTTCCCSC--EEEEEE---CHHHHHTCC
T ss_pred hhCCCCEEEEECCccccCc----c-eeccc----c-------CeeEEEecCcccccCCCc--eeEEEE---CHHHHHHhh
Confidence 99 999999999974211 1 11111 1 134789999997645445 799995 7776654
Q ss_pred -------HHh----h-hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 299 -------IYK----I-AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 299 -------l~~----~-~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
+.. . .. ..++.+...+.++.++++ ....+.++++++++++++++.+.|+++ |+.+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 276 (352)
T 1iug_A 208 PRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE----------EVLPRLEEHLALKAWQNALLYGVGEEG-GLRPV 276 (352)
T ss_dssp CCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHGGGHHHHHHHHHHHHHHHHHHHHHT-TCEES
T ss_pred CCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 221 1 11 234566677776666653 112225567888999999999999988 88887
Q ss_pred cCC-ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHH
Q 041151 366 FTE-GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMES 442 (463)
Q Consensus 366 ~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~ 442 (463)
.+. .+.++|+.+ +.+. +..++. +.|.++||.+.+|..+. +.+++||+++ .+++++++++++
T Consensus 277 ~~~~~~~~~~~~~--~~~~----------~~~~~~-~~l~~~gi~v~~~~~~~---~~~~iRi~~~~~~~~~~i~~~~~~ 340 (352)
T 1iug_A 277 PKRFSPAVAAFYL--PEGV----------PYARVK-EAFAQRGAVIAGGQGPL---KGKVFRLSLMGAYDRYEALGVAGM 340 (352)
T ss_dssp CSSBCTTCEEEEC--CTTC----------CHHHHH-HHHHTTTEECEECCGGG---TTTEEEECCCSSCCHHHHHHHHHH
T ss_pred ccccCCeEEEEEc--CCCC----------CHHHHH-HHHHHCCEEEEeCCCcc---CCCEEEEEccccCCHHHHHHHHHH
Confidence 764 566777544 3221 234544 44566799999988332 3458999999 578999999999
Q ss_pred HHHHHHHH
Q 041151 443 FKKFNDEF 450 (463)
Q Consensus 443 l~~~l~~~ 450 (463)
|+++++++
T Consensus 341 l~~~~~~~ 348 (352)
T 1iug_A 341 FREVLEEI 348 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=253.07 Aligned_cols=306 Identities=14% Similarity=0.124 Sum_probs=213.4
Q ss_pred cHHHHHHHHHHhh--hcCCCC----C--ccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC
Q 041151 82 PADAIARAKHYLS--LTSGGL----G--AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~--~~~~~~----~--~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~ 153 (463)
|+.+++++.+.+. ...... . .|.......++++.++++++ +++++|++|+|+++++..++.++. +
T Consensus 35 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~v~~~~ggt~a~~~a~~~l~-~ 107 (423)
T 3lvm_A 35 DPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPREIVFTSGATESDNLAIKGAA-N 107 (423)
T ss_dssp CHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcC------CCCCeEEEeCChHHHHHHHHHHHH-H
Confidence 8889998887766 310000 0 01111233567777777765 577899999999999999999886 4
Q ss_pred ----CCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 154 ----EGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 154 ----~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
+||.|+++ .|.++ ...++.+|+ +.|++++++ ++++|++++|+||||.++
T Consensus 108 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~ 180 (423)
T 3lvm_A 108 FYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDL-KELEAAMRD------DTILVSIMHVNNEIGVVQ 180 (423)
T ss_dssp HHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCH-HHHHHHCCT------TEEEEECCSBCTTTCBBC
T ss_pred hhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCH-HHHHHhcCC------CcEEEEEeCCCCCCcccc
Confidence 89999986 26665 344677899 999999987 799999999999999999
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+ +++|+++|+++|++||+||+|+.... .... ...+..+++.|+||.+ |++| +||+++
T Consensus 181 ~---l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~-----------~~~~~di~~~s~sK~~-g~~g--~G~~~~- 237 (423)
T 3lvm_A 181 D---IAAIGEMCRARGIIYHVDATQSVGKL-----PIDL-----------SQLKVDLMSFSGHKIY-GPKG--IGALYV- 237 (423)
T ss_dssp C---HHHHHHHHHHHTCEEEEECTTTTTTS-----CCCT-----------TTSCCSEEEEESTTTT-SCSS--CEEEEE-
T ss_pred C---HHHHHHHHHHcCCEEEEEhhhhcCCC-----CcCh-----------hhcCCCEEEechHHhc-CCCC--eEEEEE-
Confidence 9 67788899999999999999875322 1111 2223458999999977 7777 899985
Q ss_pred CCChhHHHHHHhhhh--------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 290 NIPPKTVDEIYKIAS--------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
+++.++.+..... ...+.+...+.++..+++ ....+.++++++++++++++.+.|+++||
T Consensus 238 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 305 (423)
T 3lvm_A 238 --RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYR----------IAKEEMATEMERLRGLRNRLWNGIKDIEE 305 (423)
T ss_dssp --CBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred --eccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6555555543321 134455666666655542 22333567889999999999999999989
Q ss_pred cccccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CC
Q 041151 362 VVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GI 422 (463)
Q Consensus 362 ~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~ 422 (463)
+.+..+.+ +.++++.+. .. +..++ ...|.+ |.+.+|..|.... ..
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~l-~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~ 369 (423)
T 3lvm_A 306 VYLNGDLEHGAPNILNVSFN--YV-----------EGESL-IMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAH 369 (423)
T ss_dssp EEEESCSTTBCTTEEEEEET--TS-----------CHHHH-HHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHH
T ss_pred EEEeCCccccCCCeEEEEeC--CC-----------CHHHH-HHHHhh--heeccCccccCCCccccHHHHHhCCCccccC
Confidence 88876654 223332232 11 23343 444555 9999998765410 03
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+++||+++ .+++++++++++|+++++++++
T Consensus 370 ~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 370 SSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 68999999 6779999999999999987653
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=241.13 Aligned_cols=307 Identities=15% Similarity=0.103 Sum_probs=209.3
Q ss_pred cHHHHHHHHHHhhhcCCCC-CccCCCCC----CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---C
Q 041151 82 PADAIARAKHYLSLTSGGL-GAYSDSRG----IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR---G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~-~~Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~ 153 (463)
|+.+++++.+.+....... ..|....+ ..++++.++++++ +++++|++|+|+++++..++.++.. +
T Consensus 13 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~i~~~~g~~~a~~~~~~~~~~~~~~ 86 (382)
T 4hvk_A 13 DERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVN------GGGGTVVFTSGATEANNLAIIGYAMRNAR 86 (382)
T ss_dssp CHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTT------CTTEEEEEESSHHHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcC------CCcCeEEEECCchHHHHHHHHHhhhhhcC
Confidence 8899999988876521100 11211111 2255555555554 5678999999999999999998852 6
Q ss_pred CCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 154 EGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 154 ~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+||+|+++ .|.++ ....+.+|+ ++|++++++ ++++|++++|+||||.+++
T Consensus 87 ~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~--- 156 (382)
T 4hvk_A 87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDV-SFIDQKLRD------DTILVSVQHANNEIGTIQP--- 156 (382)
T ss_dssp GCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCH-HHHHHHCCT------TEEEEECCSBCTTTCBBCC---
T ss_pred CCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCH-HHHHHHhcc------CceEEEEECCCCCceeeCC---
Confidence 99999995 36666 345677899 999999886 7999999999999999998
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+++|.++|+++|+ ||+|++|+.... ..++... + ..+++.|+||.+ |++| +|++++ ++
T Consensus 157 ~~~i~~l~~~~~~-li~D~a~~~~~~-----~~~~~~~--------~---~d~~~~s~~K~~-g~~g--~g~~~~---~~ 213 (382)
T 4hvk_A 157 VEEISEVLAGKAA-LHIDATASVGQI-----EVDVEKI--------G---ADMLTISSNDIY-GPKG--VGALWI---RK 213 (382)
T ss_dssp HHHHHHHHSSSSE-EEEECTTTBTTB-----CCCHHHH--------T---CSEEEEESGGGT-SCTT--CEEEEE---ET
T ss_pred HHHHHHHHHHcCE-EEEEhHHhcCCC-----CCCchhc--------C---CCEEEEeHHHhc-CCCc--eEEEEE---cC
Confidence 6678889999999 999999875322 1223221 1 348999999977 7777 666664 22
Q ss_pred hHHHHHHhhh-------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 294 KTVDEIYKIA-------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 294 ~~~~~l~~~~-------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
+. .+.... . ...+.+...+.++.+++. ......++++++++++++++.+.|+++||+.+.
T Consensus 214 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 281 (382)
T 4hvk_A 214 EA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE----------ITAMEWREEAERLRRLRDRIIDNVLKIEESYLN 281 (382)
T ss_dssp TC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEC
T ss_pred cc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Confidence 22 111111 0 133445566666655542 123445678889999999999999998898887
Q ss_pred cCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC----------------CcEEE
Q 041151 366 FTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG----------------IFHLR 426 (463)
Q Consensus 366 ~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~----------------~~~lR 426 (463)
.+.+ +.++++.+ +.. +..+ +.+.|.++||.+.+|..|..... .+++|
T Consensus 282 ~~~~~~~~~~~~~~~--~~~-----------~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 347 (382)
T 4hvk_A 282 GHPEKRLPNNVNVRF--SYI-----------EGES-IVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLL 347 (382)
T ss_dssp SCSSSBCTTEEEEEE--TTC-----------CHHH-HHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEE
T ss_pred CCccccCCCEEEEEE--CCC-----------CHHH-HHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEE
Confidence 6654 22334333 211 2334 44667788999999988765310 46899
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
|+++ .+++++++++++|+++++++.+.
T Consensus 348 l~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 348 LTLGRYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 67899999999999999887764
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=250.79 Aligned_cols=300 Identities=13% Similarity=0.108 Sum_probs=207.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE--EE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG--VV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~--Vl 159 (463)
++.+++++.+.+. ...|++..+..+|+++++++++ . +..++++|+++++..++.+++ .+||. |+
T Consensus 28 ~p~v~~ai~~~~~-----~~~~~~~~~~~~l~~~la~~~~------~--~~~i~~~~g~~a~~~a~~~~~-~~g~~~vvi 93 (359)
T 3pj0_A 28 LTEALQNIDDNLE-----SDIYGNGAVIEDFETKIAKILG------K--QSAVFFPSGTMAQQIALRIWA-DRKENRRVA 93 (359)
T ss_dssp HHHHTTTSCTTCB-----CCBTTBSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHH-HHHTCCEEE
T ss_pred CHHHHHHHHhhcc-----cCcccCCHHHHHHHHHHHHHhC------C--CcEEEeCCHHHHHHHHHHHHH-hcCCCcEEE
Confidence 5666666655332 2457666678899999999985 2 223455777899999999997 78876 55
Q ss_pred Ec----------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHH
Q 041151 160 LL----------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILR 219 (463)
Q Consensus 160 vp----------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~ 219 (463)
++ .|.++ +...+.+|+ +.|+++ .+ ++++|++++||||| |.+++.+++++|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~-~~------~~~~v~~~~p~n~~~G~~~~~~~l~~l~~ 165 (359)
T 3pj0_A 94 YHPLSHLEIHEQDGLKELQQITPLLLGTANQLLTI-DDIKSL-RE------PVSSVLIELPQREIGGQLPAFEELEKISE 165 (359)
T ss_dssp ECTTCHHHHSSTTHHHHHHCCEEEECSCTTSCCCH-HHHHTC-SS------CCSEEEEESSBGGGTSBCCCHHHHHHHHH
T ss_pred EeccceeeehhcchHHHhcCceEEecCCcCCCcCH-HHHHhc-cC------CceEEEEEecccCCCcccCCHHHHHHHHH
Confidence 53 24444 445678999 999987 33 79999999999998 79999999999999
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|++||++||+|++|..+... ....+...+... . .+++.|+||++ +.++ .||++ +++++++.+
T Consensus 166 ~~~~~~~~li~D~a~~~~~~~--~~~~~~~~~~~~------~---d~~~~s~sK~~-~~~~--gg~~~---~~~~l~~~~ 228 (359)
T 3pj0_A 166 YCHEQGISLHLDGARLWEITP--FYQKSAEEICAL------F---DSVYVSFYKGI-GGIA--GAILA---GNDDFVQEA 228 (359)
T ss_dssp HHHHHTCEEEEEETTCGGGHH--HHTCCHHHHHTT------C---SEEEEESSSTT-CCSS--CEEEE---ECHHHHHHH
T ss_pred HHHHcCCEEEEECcchhcchh--hhCCCHHHhhcc------C---CEEEEeccccC-CCcc--eEEEE---CCHHHHHHH
Confidence 999999999999998754310 001123232211 1 14567999998 5443 27777 599999999
Q ss_pred Hhhhh-hcccCC--hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEee
Q 041151 300 YKIAS-IALSPN--VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFP 375 (463)
Q Consensus 300 ~~~~~-~~~~~~--~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~ 375 (463)
.+... ...+.. ...+.++...+ +.+. +..+++.++++.+.+.|+++||+.+. .|.++.++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~a~~~~l----------~~~~----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~ 294 (359)
T 3pj0_A 229 KIWKRRYGGDLISLYPYILSADYYF----------EKRI----GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHV 294 (359)
T ss_dssp HHHHHHTTCCCSCCHHHHHHHHHHH----------HHHG----GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEE
T ss_pred HHHHHHhCCCcchhHHHHHHHHHHH----------HHHH----HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEE
Confidence 87653 222222 22222222222 1221 23445788889999999998899885 5667778887
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-----CCcCcHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-----PAEEDMPAIMESFKKF 446 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-----~~~e~i~~~~~~l~~~ 446 (463)
+++.+... +...+.+.|.++||.++||..|+. ++..++|++++ .+.+++++++++|++.
T Consensus 295 ~~~~~~~~-----------~~~~l~~~l~~~GV~v~~g~~~~~-~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 295 YFENSADE-----------IGAILTKIQDETGVGISGYLQEKS-ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EESSCHHH-----------HHHHHHHHHHHHCEECCSCCEEEE-TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred EecCccch-----------hHHHHHHHHHhcCcEecCCccccC-CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 77655321 334456677889999999988876 46678999987 4677888888887654
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=246.48 Aligned_cols=304 Identities=11% Similarity=0.101 Sum_probs=214.0
Q ss_pred CCcHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 80 VFPADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 80 ~~p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
.+|+.+++++.+.+.. .|.+ .....++++.++++++ .+ ++++|++|+|+++++..++.+++ ++||+
T Consensus 33 ~~~~~v~~a~~~~~~~------~~~~~~~~~~~~l~~~la~~~~----~~-~~~~v~~~~gg~~al~~~~~~~~-~~gd~ 100 (393)
T 3kgw_A 33 NLAPRVLAAGSLRMIG------HMQKEMLQIMEEIKQGIQYVFQ----TR-NPLTLVVSGSGHCAMETALFNLL-EPGDS 100 (393)
T ss_dssp CCCHHHHHHTTCCCCC------TTSHHHHHHHHHHHHHHHHHHT----CC-CSEEEEESCCTTTHHHHHHHHHC-CTTCE
T ss_pred CCCHHHHHHhcccccC------cccHHHHHHHHHHHHHHHHHhC----CC-CCcEEEEeCCcHHHHHHHHHhcC-CCCCE
Confidence 3478887776543221 1211 1223456666666654 32 23369999999999999999997 99999
Q ss_pred EEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHH
Q 041151 158 VVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREIL 218 (463)
Q Consensus 158 Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~ 218 (463)
|+++ .|.++ ....+.+|+ +.|++.+++. ++++|++++||||||.+++ +++|.
T Consensus 101 vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~ 171 (393)
T 3kgw_A 101 FLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTL-QEVEEGLAQH-----KPVLLFLVHGESSTGVVQP---LDGFG 171 (393)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTHH
T ss_pred EEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCH-HHHHHHHhhC-----CCcEEEEeccCCcchhhcc---HHHHH
Confidence 9997 34444 234457899 9999999875 7999999999999999998 77888
Q ss_pred HHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 219 RFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 219 ~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
++|++||++||+||+|+.... . ..+ ...+..+++.|+||+++|++| +||+++ ++++++.
T Consensus 172 ~l~~~~~~~li~De~~~~g~~----~-~~~-----------~~~~~d~~~~s~sK~~~~~~g--~g~~~~---~~~~~~~ 230 (393)
T 3kgw_A 172 ELCHRYQCLLLVDSVASLGGV----P-IYM-----------DQQGIDIMYSSSQKVLNAPPG--ISLISF---NDKAKYK 230 (393)
T ss_dssp HHHHHTTCEEEEECTTTTTTS----C-CCT-----------TTTTCCEEEEESSSTTCCCSS--CEEEEE---CHHHHHH
T ss_pred HHHHHcCCEEEEECCccccCc----c-cch-----------hhcCCCEEEecCcccccCCCc--eeEEEE---CHHHHHH
Confidence 899999999999999874321 1 111 122245888999998855555 899994 8889888
Q ss_pred HHhhhh------------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHH
Q 041151 299 IYKIAS------------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMT 353 (463)
Q Consensus 299 l~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 353 (463)
+..... ...+.+...+.++.++++ ....+ .++++++++++++.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~ 300 (393)
T 3kgw_A 231 VYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLA----------LIAEQGLENCWRRHREATAHLH 300 (393)
T ss_dssp HHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHH
Confidence 875431 023446666666655542 12222 5678889999999999
Q ss_pred HHhhcCCCcccccCCc----eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 354 DGFNSCRNVVCNFTEG----AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 354 ~~L~~~pg~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+.|+++ |+.+..+.+ ++++|+ .+|.+. +..++...+++++||.+.+|..+. ..+++||++
T Consensus 301 ~~L~~~-g~~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~l~~~~gi~v~~g~~~~---~~~~iRi~~ 364 (393)
T 3kgw_A 301 KHLQEM-GLKFFVKDPEIRLPTITTV--TVPAGY----------NWRDIVSYVLDHFSIEISGGLGPT---EERVLRIGL 364 (393)
T ss_dssp HHHHHT-TCCBSSSSGGGBCSSEEEE--ECCTTB----------CHHHHHHHHHHHHCEECBCCCGGG---TTTEEEEEC
T ss_pred HHHHHc-CCeeccCChhhcCCeEEEE--eCCCCC----------CHHHHHHHHHHhCCEEEeCCcccC---CCCEEEEEe
Confidence 999998 888764433 455563 444321 245566565565699999988543 234899998
Q ss_pred -c--CCcCcHHHHHHHHHHHHHHHH
Q 041151 430 -L--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 430 -~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+ .+++++++++++|+++++++.
T Consensus 365 ~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 365 LGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred cccCCCHHHHHHHHHHHHHHHHhhh
Confidence 6 488999999999999987653
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=247.25 Aligned_cols=309 Identities=10% Similarity=0.083 Sum_probs=214.1
Q ss_pred cHHHHHHHHHHhhhcCCC-CCccC----CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH---hcC
Q 041151 82 PADAIARAKHYLSLTSGG-LGAYS----DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV---IRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-~~~Y~----~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~~ 153 (463)
|+.+++++.+.+...... ...|+ ...+..++|++++++++ +++++|++|+|+++++..++.++ + +
T Consensus 39 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~al~~~~~~l~~~~-~ 111 (406)
T 3cai_A 39 PDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVN------ADPGGVVLGADRAVLLSLLAEASSSRA-G 111 (406)
T ss_dssp CHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESCHHHHHHHHHHHTGGGG-B
T ss_pred CHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------CCCCeEEEeCChHHHHHHHHHHHhhcc-C
Confidence 889999998887752111 11232 23456788899998885 56789999999999999999987 6 8
Q ss_pred CCCEEEEc-----------------cCcee---c-C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 154 EGDGVVLL-----------------FHTTW---K-R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 154 ~gd~Vlvp-----------------~g~~~---~-~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
+||+|+++ .|.++ + . .++.+|+ +.|++.+++ ++++|++++|+||||.+++
T Consensus 112 ~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~~- 183 (406)
T 3cai_A 112 LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPT-WQWESLISK------STRLVAVNSASGTLGGVTD- 183 (406)
T ss_dssp TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCG-GGHHHHCCT------TEEEEEEESBCTTTCBBCC-
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCH-HHHHHHhCC------CceEEEEeCCcCCccccCC-
Confidence 99999996 15555 2 2 4567899 999999876 7999999999999999998
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeE-EEEecC
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG-YFEMTN 290 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G-~~~~~~ 290 (463)
+++|.++|+++|++||+|++|+.... ..++..+ + ..+++.|+||.+ | ++ +| |++
T Consensus 184 --l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~--------~---~d~~~~s~~K~~-g-~~--~G~~~~--- 238 (406)
T 3cai_A 184 --LRAMTKLVHDVGALVVVDHSAAAPYR-----LLDIRET--------D---ADVVTVNAHAWG-G-PP--IGAMVF--- 238 (406)
T ss_dssp --CHHHHHHHHHTTCEEEEECTTTTTTC-----CCCHHHH--------C---CSEEEEEGGGGT-S-CS--CEEEEE---
T ss_pred --HHHHHHHHHHcCCEEEEEcccccCCC-----CCCchhc--------C---CCEEEeehhhhc-C-CC--cCeEEE---
Confidence 67888889999999999999984211 1233222 2 348899999977 5 44 89 998
Q ss_pred CChhHHHHHHhhhh---------h-cccCChHHHHHHHHhcCCCCC-C----CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIYKIAS---------I-ALSPNVPAQIFMGLMVNPLKP-G----DISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 291 ~~~~~~~~l~~~~~---------~-~~~~~~~~q~~~~~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
.++++++.+..... . ..+.+...+.++.++++.... + ......+.++.++++++++++++++.+.
T Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (406)
T 3cai_A 239 RDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVS 318 (406)
T ss_dssp SCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 58877776654421 1 233455555454444420000 0 0000011113567888899999999999
Q ss_pred hhcCCCcccccCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC------CCCCCCCCcEEE
Q 041151 356 FNSCRNVVCNFTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS------GFGQKEGIFHLR 426 (463)
Q Consensus 356 L~~~pg~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~------~f~~~~~~~~lR 426 (463)
|+++||+.+..+. ++ ++++.+ +.. +..++ .+.|.++||.+.+|. .|+...+.+++|
T Consensus 319 L~~~~~~~~~~~~~~~~~-~~~~~~--~~~-----------~~~~~-~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iR 383 (406)
T 3cai_A 319 LRSLPLVMLIGRPEAQIP-VVSFAV--HKV-----------PADRV-VQRLADNGILAIANTGSRVLDVLGVNDVGGAVT 383 (406)
T ss_dssp HHTCTTEEECCCCSSBCS-EEEEEE--TTB-----------CHHHH-HHHHHHTTEECEECCSCHHHHHHTTTTTTCCEE
T ss_pred HhcCCCeEEcCCccccCC-EEEEEE--CCc-----------CHHHH-HHHHHHCCcEEecCChHHHHHHcCCCCCCCeEE
Confidence 9998888877664 44 455433 311 23444 445667899999987 444432346899
Q ss_pred EEec--CCcCcHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKK 445 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~ 445 (463)
|+++ .+++++++++++|++
T Consensus 384 is~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 384 VGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp EECCTTCCHHHHHHHHHHHHT
T ss_pred EEeecCCCHHHHHHHHHHHHH
Confidence 9999 578999999999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-29 Score=244.48 Aligned_cols=285 Identities=12% Similarity=0.070 Sum_probs=199.6
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC--EEEEc----------------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD--GVVLL---------------- 161 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd--~Vlvp---------------- 161 (463)
...|++..+..+|+++++++++ . +..|++ +|+++++..++.+++ ++|| .|+++
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~~------~-~~~i~~-~~G~~a~~~al~~~~-~~gd~~~vi~~~~~~~~~~~~~~~~~~ 110 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVLG------M-DDAVFF-PSGTMAQQVALRIWS-DETDNRTVAYHPLCHLEIHEQDGLKEL 110 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHHT------C-SEEEEE-SCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHH
T ss_pred cccccCChHHHHHHHHHHHHhC------C-CcEEEe-cCcHHHHHHHHHHHh-hcCCCcEEEecccceeeeeccchhhhc
Confidence 3568776788999999999985 2 234444 666889999999997 7888 77775
Q ss_pred cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 162 FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 162 ~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
.|+++ +...+.+|+ +.|+++ . ++++|++++||||| |.+++.+++++|+++|++||++||+|++|...
T Consensus 111 ~g~~~~~v~~~~~~~d~-~~l~~~--~------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~ 181 (357)
T 3lws_A 111 HPIETILVGAADRLMTL-DEIKAL--P------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFE 181 (357)
T ss_dssp SSCEEEECSCTTSCCCH-HHHHTC--C------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred cCcEEEEecCCCCCcCH-HHHhcC--c------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhh
Confidence 23444 445567999 999886 2 58999999999998 99999999999999999999999999998721
Q ss_pred ccC-CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc--CChHH
Q 041151 238 IYQ-DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS--PNVPA 313 (463)
Q Consensus 238 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~--~~~~~ 313 (463)
... .+ .+...+... .+ +++.|+||++++ ++ .||++ +++++++.+.+... ...+ .....
T Consensus 182 ~~~~~~---~~~~~~~~~-------~d--~~~~s~sK~~~~-~~--gg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 3lws_A 182 MLPYYE---KTAAEIAGL-------FD--SIYISFYKGLGG-IA--GAILA---GPAAFCQTARIWKRRYGGDLISLYPY 243 (357)
T ss_dssp HHHHHT---CCHHHHHTT-------SS--EEEEESSSTTCC-SS--CEEEE---ECHHHHHHHHHHHHHTTCCCSCCHHH
T ss_pred hhhhcC---CChHHHHhc-------CC--EEEEeccccCCC-Cc--eEEEE---cCHHHHHHHHHHHHHhcCCcccchHH
Confidence 110 11 123333211 11 347899999833 33 39988 58999999877654 2222 22333
Q ss_pred HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 314 QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 314 q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
+.++...+ +.+ . +..+++.++++.+.+.|+++||+.+ ..+.+++|+|++++.+..
T Consensus 244 ~~~~~~~l----------~~~---~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------- 299 (357)
T 3lws_A 244 IVSADYYY----------ELR---K-DRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA---------- 299 (357)
T ss_dssp HHHHHHHH----------HHH---T-TCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH----------
T ss_pred HHHHHHHH----------HHH---H-HHHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH----------
Confidence 33333332 121 1 2233467788899999999989988 456777888977753321
Q ss_pred CChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-----CCcCcHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-----PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-----~~~e~i~~~~~~l~~~l 447 (463)
.+.+.+.+.|.++||.++||..|. ++..++|++++ .+.+++++++++|++++
T Consensus 300 -~~~~~~~~~l~~~Gi~v~~g~~~~--~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 300 -DISPKLEQVQEETGLGFVGYLVDK--DGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp -HHHHHHHHHHHHHCEESCSCCEEC--SSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHhcCeEEecccccC--CCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 023344567788999999997665 36668999987 46678888888887654
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=239.37 Aligned_cols=308 Identities=10% Similarity=0.024 Sum_probs=210.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC-------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE------- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~------- 154 (463)
++.+.+++.+.+... ...|....+..++++++++++.+.+| +++++|++|+|+++++..++.++. .+
T Consensus 43 ~~~v~~a~~~~~~~~---~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~~~-~~~~~~~~~ 116 (397)
T 3f9t_A 43 LPITRKIVDIFLETN---LGDPGLFKGTKLLEEKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRCIK-NIWREKRRK 116 (397)
T ss_dssp CTHHHHHHHHHTTCC---TTSGGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred cHHHHHHHHHHHhhc---CCCcccChhHHHHHHHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHHHH-HHHHhhhhh
Confidence 677888888877652 12222112456777777777766666 467899999999999999999997 65
Q ss_pred ------CCEEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCH
Q 041151 155 ------GDGVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSE 211 (463)
Q Consensus 155 ------gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~ 211 (463)
||+|+++ .|.++ ....+.+|+ +.|++++++. ++++|++++|+||||.+.+
T Consensus 117 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~- 189 (397)
T 3f9t_A 117 GLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDE-KFVKDAVEDY-----DVDGIIGIAGTTELGTIDN- 189 (397)
T ss_dssp TCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCH-HHHHHHHHHS-----CCCEEEEEBSCTTTCCBCC-
T ss_pred cccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCH-HHHHHHHhhc-----CCeEEEEECCCCCCCCCCC-
Confidence 9999997 56555 344677899 9999999873 5899999999999999987
Q ss_pred HHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH--HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 212 ANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL--MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 212 ~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+++|.++|++||++||+||+|..+.++......++..+. .++ .. +..+++.|+||++ + +|.|+||+++
T Consensus 190 --l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~s~~K~~-~-~~~~~g~~~~- 259 (397)
T 3f9t_A 190 --IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDF----SL-GVDSITIDPHKMG-H-CPIPSGGILF- 259 (397)
T ss_dssp --HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSG----GG-TCSEEECCTTTTT-C-CCSSCEEEEE-
T ss_pred --HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccc----cc-cCCeEEEcccccc-C-CCCCceEEEE-
Confidence 777888999999999999999876441111000000000 000 11 2357889999976 3 6789999987
Q ss_pred CCChhHHHHHHhhhhh-c--------cc---CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 290 NIPPKTVDEIYKIASI-A--------LS---PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~~-~--------~~---~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
.++.+++.+...... . .+ .+...+.++...+ .....++..++++++++++.+.|+
T Consensus 260 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~------------~~~~~~~~~~~~~~~~~~l~~~L~ 326 (397)
T 3f9t_A 260 -KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYL------------GREGQRKIVNECMENTLYLYKKLK 326 (397)
T ss_dssp -SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555332221 0 11 1333444444432 123345677788899999999999
Q ss_pred cCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc
Q 041151 358 SCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED 435 (463)
Q Consensus 358 ~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~ 435 (463)
++ |+.+..+..+.++|+.+. . ..++ .+.|.++||.+.++.. .+++||+++ .++++
T Consensus 327 ~~-g~~~~~~~~~~~~~~~~~--~-------------~~~~-~~~l~~~gi~v~~~~~------~~~~Ri~~~~~~~~e~ 383 (397)
T 3f9t_A 327 EN-NFKPVIEPILNIVAIEDE--D-------------YKEV-CKKLRDRGIYVSVCNC------VKALRIVVMPHIKREH 383 (397)
T ss_dssp HT-TCCBSSCCSSSEEEEECT--T-------------HHHH-HHHHHHTTCBCEECSS------SSEEEEECCTTCCHHH
T ss_pred HC-CCEEEcCCCccEEEEEeC--C-------------HHHH-HHHHHhCCeEEeccCC------CCEEEEEEcCCCCHHH
Confidence 98 887655444555553332 1 2343 4556677999999763 248999999 68899
Q ss_pred HHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFND 448 (463)
Q Consensus 436 i~~~~~~l~~~l~ 448 (463)
+++++++|+++++
T Consensus 384 i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 384 IDNFIEILNSIKR 396 (397)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhC
Confidence 9999999998764
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=246.33 Aligned_cols=304 Identities=14% Similarity=0.122 Sum_probs=208.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~ 154 (463)
++.+.+++.+++.........|+ .+.++++++++.+.+ ..++|++|+|+++++..++.++. . +
T Consensus 57 ~p~v~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~la~~~----~~~~v~~~~gg~~a~~~al~~~~-~~~~~~~~~ 126 (406)
T 4adb_A 57 HPELREALNEQASKFWHTGNGYT-----NEPVLRLAKKLIDAT----FADRVFFCNSGAEANEAALKLAR-KFAHDRYGS 126 (406)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSC-----CHHHHHHHHHHHHHS----SCSEEEEESSHHHHHHHHHHHHH-HHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcccccCCcC-----CHHHHHHHHHHHhhC----CCCeEEEeCcHHHHHHHHHHHHH-HHHHhcCCC
Confidence 78899999888876211112232 233444555554443 34699999999999999999886 4 6
Q ss_pred C-CEEEEc---cCcee-----------------c-CCCcc----cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 155 G-DGVVLL---FHTTW-----------------K-RQQIG----VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 155 g-d~Vlvp---~g~~~-----------------~-~~~~~----~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
| |.|+++ +.... + ..+.. .|+ +.|++++++ ++++|+++ |+||||.+
T Consensus 127 g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~-p~np~g~~ 198 (406)
T 4adb_A 127 HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDI-NSASALIDD------STCAVIVE-PIQGEGGV 198 (406)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCH-HHHHTTCST------TEEEEEEC-SEETTTTS
T ss_pred CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcH-HHHHHHhcC------CeEEEEEe-CCcCCCCC
Confidence 6 888886 11110 0 01222 478 999998875 89999888 99999999
Q ss_pred C--CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 209 L--SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 209 ~--s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+ +.+++++|+++|++||++||+||+|.++.+. +.. ..+... +. .. +++ ||||++ + +|+|+||+
T Consensus 199 ~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~~-~~~~~~--~~----~~--d~~---t~sK~~-~-~G~r~G~~ 263 (406)
T 4adb_A 199 VPASNAFLQGLRELCNRHNALLIFDEVQTGVGRT-GEL-YAYMHY--GV----TP--DLL---TTAKAL-G-GGFPVGAL 263 (406)
T ss_dssp EECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSS-SHHHHH--TC----CC--SEE---EECGGG-G-TTSCCEEE
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc-chh-HHHHhc--CC----CC--CEE---Eechhh-c-CCCCeEEE
Confidence 8 9999999999999999999999999976552 222 122221 11 22 233 679999 7 89999999
Q ss_pred EecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC
Q 041151 287 EMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----RN 361 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg 361 (463)
+ +++++++.+..... .+++.+.+.|.++.++++ ... .++.+++++++++++.+.|+++ +.
T Consensus 264 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----------~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 328 (406)
T 4adb_A 264 L---ATEECARVMTVGTHGTTYGGNPLASAVAGKVLE-----------LIN-TPEMLNGVKQRHDWFVERLNTINHRYGL 328 (406)
T ss_dssp E---ECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHH-----------HHS-SHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred E---EcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHH-----------HHH-hcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8 58888888876653 567889999999888763 111 1356677888888888888764 11
Q ss_pred cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
+.. .+..+.++|+.+..+.. .+..+++ ..|.++||.+.|+. .+++|++++ .++++++++
T Consensus 329 ~~~-~~~~g~~~~~~~~~~~~----------~~~~~~~-~~l~~~gi~v~~~~-------~~~iRi~~~~~~~~e~i~~~ 389 (406)
T 4adb_A 329 FSE-VRGLGLLIGCVLNADYA----------GQAKQIS-QEAAKAGVMVLIAG-------GNVVRFAPALNVSEEEVTTG 389 (406)
T ss_dssp EEE-EEEETTEEEEEECTTTT----------TCHHHHH-HHHHHTTEECEESS-------TTEEEECCCTTCCHHHHHHH
T ss_pred ceE-EEEEEEEEEEEEeCCcH----------HHHHHHH-HHHHHCCcEEeecC-------CCeEEEECCCCCCHHHHHHH
Confidence 111 12235566655432110 1234444 44566799999853 348999655 889999999
Q ss_pred HHHHHHHHHHHHH
Q 041151 440 MESFKKFNDEFME 452 (463)
Q Consensus 440 ~~~l~~~l~~~~~ 452 (463)
+++|+++++++.+
T Consensus 390 ~~~l~~~l~~~~~ 402 (406)
T 4adb_A 390 LDRFAAACEHFVS 402 (406)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=238.91 Aligned_cols=331 Identities=14% Similarity=0.051 Sum_probs=227.2
Q ss_pred HHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCC
Q 041151 28 LRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSR 107 (463)
Q Consensus 28 ~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~ 107 (463)
..+++.....+++|+|+.|.+.. |+.+++++.+.+.+. ...+|+...
T Consensus 13 ~~~~~~~~~~~~~i~~~~~~~~~-------------------------------~~~v~~a~~~~~~~~--~~~~y~~~~ 59 (407)
T 2dkj_A 13 ELIALEEKRQREGLELIASENFV-------------------------------SKQVREAVGSVLTNK--YAEGYPGAR 59 (407)
T ss_dssp HHHHHHHHHHHTSEECCTTCCCC-------------------------------CHHHHHHHTSGGGGC--CCCEETTEE
T ss_pred HHHHHHHHHhhcceeeccCCCCC-------------------------------CHHHHHHHHhhhhcC--cccCCCccc
Confidence 33333443445789999997664 888999998877641 234565432
Q ss_pred ---CCHH--HHHHHH-HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC-------------c-
Q 041151 108 ---GIPG--VRKEVA-EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH-------------T- 164 (463)
Q Consensus 108 ---g~~~--lr~~ia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g-------------~- 164 (463)
|.+. ++++++ +++.+.+| .++++|++++|+ +++..++.+++ ++||+|+++ ++ .
T Consensus 60 ~~~g~~~~~~~e~~ar~~la~~~g--~~~~~i~~~sGt-~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~ 135 (407)
T 2dkj_A 60 YYGGCEVIDRVESLAIERAKALFG--AAWANVQPHSGS-QANMAVYMALM-EPGDTLMGMDLAAGGHLTHGSRVNFSGKL 135 (407)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSHH-HHHHHHHHHHC-CTTCEEEEECGGGTCCGGGTCTTSHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHHHHhC--CCcceEEecchH-HHHHHHHHHhc-CCCCEEEEecccccCccchHHHHHhcCce
Confidence 5443 444322 34444444 345567777775 59999999997 899999997 21 1
Q ss_pred -ee---c-C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc-c
Q 041151 165 -TW---K-R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ-N 237 (463)
Q Consensus 165 -~~---~-~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~-~ 237 (463)
.+ . . +.+.+|+ +.|++.+++. ++++|++++|+|| ...+ +++|.++|+++|+++|+||+|+. +
T Consensus 136 ~~~~~~~~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~ 204 (407)
T 2dkj_A 136 YKVVSYGVRPDTELIDL-EEVRRLALEH-----RPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGL 204 (407)
T ss_dssp SEEEEECCCTTTSSCCH-HHHHHHHHHH-----CCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHH
T ss_pred EEEEecCCCcccCccCH-HHHHHHHhhc-----CCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccc
Confidence 11 1 2 3678999 9999999854 7899999999998 4555 78889999999999999999987 4
Q ss_pred ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC-hhHHHHHHhhhh-hcccCChHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP-PKTVDEIYKIAS-IALSPNVPAQI 315 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~~q~ 315 (463)
.+. +.....+ .. .++++.|+||++ +|+|+||+++ + +++++.+..... ...+.....+.
T Consensus 205 ~~~-~~~~~~~-----------~~--~di~~~s~sK~l---~g~~~G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~ 264 (407)
T 2dkj_A 205 VAA-GLHPNPL-----------PY--AHVVTSTTHKTL---RGPRGGLILS---NDPELGKRIDKLIFPGIQGGPLEHVI 264 (407)
T ss_dssp HHT-TCSCCCT-----------TT--CSEEEEESSGGG---CCCSCEEEEE---SCHHHHHHHHHHHTTTTCSSCCHHHH
T ss_pred ccc-CccCCcc-----------cc--ccEEEEeccccC---CCCCceEEEE---CCHHHHHHHHhhhcccccCCCcHHHH
Confidence 432 2211111 11 358899999976 5889999995 6 789988877654 23333334333
Q ss_pred -HHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCC
Q 041151 316 -FMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 316 -~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
++.++++ .. ..+.++++++++++++++.+.|++. |+.+.. +.+++++|+.++ .. +
T Consensus 265 ~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~--~~--------~- 322 (407)
T 2dkj_A 265 AGKAVAFF----------EALQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLR--PK--------G- 322 (407)
T ss_dssp HHHHHHHH----------HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG--GG--------T-
T ss_pred HHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECc--cc--------C-
Confidence 4444442 11 2345678888999999999999998 888764 356777785543 21 0
Q ss_pred CChHHHHHHHHHhcCeEeeCCCCCC---CCCCCcEEEEEec------CCcCcHHHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTVPGSGFG---QKEGIFHLRTTIL------PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~pg~~f~---~~~~~~~lRis~~------~~~e~i~~~~~~l~~~l~~ 449 (463)
.+... +...|.++||.+.+|..|. .....+++|++++ .+++++++++++|++++++
T Consensus 323 ~~~~~-~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 323 LTGKE-AEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp CCHHH-HHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 02334 4455788999999988651 1112458999996 6889999999999999887
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-29 Score=248.12 Aligned_cols=296 Identities=14% Similarity=0.133 Sum_probs=209.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC-------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE------- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~------- 154 (463)
++.+.+++.+.+.........|+ ..-..++++.+++++ | +++|++|+|+++++..++..+. .+
T Consensus 54 ~p~v~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~----g----~~~v~~~~~gt~a~~~al~~~~-~~~~~~~~~ 123 (392)
T 3ruy_A 54 HPKIINALIDQANRVTLTSRAFH-SDQLGPWYEKVAKLT----N----KEMVLPMNTGAEAVETAIKTAR-RWAYDVKKV 123 (392)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSE-ETTHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHH-HHHHHTSCC
T ss_pred CHHHHHHHHHHHHhccccccccC-CHHHHHHHHHHHHhc----C----CCEEEEeCcHHHHHHHHHHHHH-HhhhhccCC
Confidence 78899999888876311111122 223456666666654 3 6899999999999999999876 44
Q ss_pred ---CCEEEEc---c-Ccee-----c---------------CCCcc-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 155 ---GDGVVLL---F-HTTW-----K---------------RQQIG-VLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 155 ---gd~Vlvp---~-g~~~-----~---------------~~~~~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
++.|+++ + |... . ..... .|+ +.|++++++ ++++|++++|+||||
T Consensus 124 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG 196 (392)
T 3ruy_A 124 EANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDL-EALKAAITP------NTAAFILEPIQGEAG 196 (392)
T ss_dssp CTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCH-HHHHHHCCT------TEEEEEECSSBSTTT
T ss_pred CCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccH-HHHHHHhcc------CeEEEEEeCccCCCC
Confidence 6788886 2 2111 0 00111 178 999999885 899999999999999
Q ss_pred cCCCHHH-HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeE
Q 041151 207 QCLSEAN-LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGG 284 (463)
Q Consensus 207 ~~~s~~~-l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G 284 (463)
.+++.++ +++|.++|++||++||+||+|..+.+. +.. ..... .+. .. .+ .||||++ + +| +|+|
T Consensus 197 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~-g~~-~~~~~--~~~----~~--d~---~~~SK~l-~-gG~~~~G 261 (392)
T 3ruy_A 197 INIPPAGFLKEALEVCKKENVLFVADEIQTGLGRT-GKV-FACDW--DNV----TP--DM---YILGKAL-G-GGVFPIS 261 (392)
T ss_dssp SBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTT-SSS-SGGGG--GTC----CC--SE---EEECGGG-G-TTTSCCE
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcc-ccc-hhhhc--cCC----CC--CE---EEEchhh-h-CChhhhE
Confidence 9996555 999999999999999999999876552 221 11111 011 11 22 3789998 3 36 9999
Q ss_pred EEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CC
Q 041151 285 YFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RN 361 (463)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg 361 (463)
|++ +++++++.+..... .+++.+.+.+.++.++++ .... ++.+++++++++++.+.|+++ +.
T Consensus 262 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-----------~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~ 326 (392)
T 3ruy_A 262 CAA---ANRDILGVFEPGSHGSTFGGNPLACAVSIAALE-----------VLEE-EKLTERSLQLGEKLVGQLKEIDNPM 326 (392)
T ss_dssp EEE---ECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred EEE---ECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHH-----------HHHh-hhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999 48888877766553 567889999999888873 2222 567888999999999999987 34
Q ss_pred cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
+....+.|+++.|. ++ . +..++.. .|.++||.+.||. .+++|++++ .++++++++
T Consensus 327 ~~~~~~~g~~~~~~-~~--~------------~~~~l~~-~l~~~gi~v~~~~-------~~~iRi~~~~~~~~~~i~~~ 383 (392)
T 3ruy_A 327 ITEVRGKGLFIGIE-LN--E------------PARPYCE-QLKAAGLLCKETH-------ENVIRIAPPLVISEEDLEWA 383 (392)
T ss_dssp EEEEEEETTEEEEE-ES--S------------CSHHHHH-HHHTTTEECCCBT-------TTEEEECCCTTCCHHHHHHH
T ss_pred ceEEEeeeeEEEEE-Ec--c------------hHHHHHH-HHHHCCcEEecCC-------CCEEEEECCCCCCHHHHHHH
Confidence 55556667666652 33 1 1345444 4568899999864 348999966 788999999
Q ss_pred HHHHHHHH
Q 041151 440 MESFKKFN 447 (463)
Q Consensus 440 ~~~l~~~l 447 (463)
+++|++++
T Consensus 384 ~~~l~~~l 391 (392)
T 3ruy_A 384 FQKIKAVL 391 (392)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998876
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=239.78 Aligned_cols=298 Identities=11% Similarity=0.021 Sum_probs=212.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC-CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS-DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
|+.+++++.+.+.. +.|+ ...+..++|++++++++ .+.++++|++|+|+++++..++.++. + |+|++
T Consensus 12 ~~~v~~a~~~~~~~-----~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~t~g~t~a~~~~~~~~~-~--d~vl~ 79 (353)
T 2yrr_A 12 PERVQKALLRPMRG-----HLDPEVLRVNRAIQERLAALFD----PGEGALVAALAGSGSLGMEAGLANLD-R--GPVLV 79 (353)
T ss_dssp CHHHHGGGGSCCCC-----TTCHHHHHHHHHHHHHHHHHHC----CCTTCEEEEESSCHHHHHHHHHHTCS-C--CCEEE
T ss_pred CHHHHHHHhccccc-----ccCHHHHHHHHHHHHHHHHHhC----CCCCCceEEEcCCcHHHHHHHHHHhc-C--CcEEE
Confidence 78888877665443 2232 22345778888887774 33457899999999999999999986 5 77888
Q ss_pred c---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|.++ ...++.+|+ +.|++.+++. ++++|++++|+||||.+++ +++|.++|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---~~~i~~l~ 150 (353)
T 2yrr_A 80 LVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDP-EAVARALKRR-----RYRMVALVHGETSTGVLNP---AEAIGALA 150 (353)
T ss_dssp EECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCH-HHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCH-HHHHHHHHhC-----CCCEEEEEccCCCcceecC---HHHHHHHH
Confidence 5 34444 234566899 9999999862 5899999999999999998 66788889
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+++|++||+|++|+... . ..++..+ + ..+++.|++|++++++| +||+++ ++++++.+..
T Consensus 151 ~~~~~~li~D~a~~~~~----~-~~~~~~~--------~---~d~~~~s~~K~~~~~~g--~G~~~~---~~~~~~~l~~ 209 (353)
T 2yrr_A 151 KEAGALFFLDAVTTLGM----L-PFSMRAM--------G---VDYAFTGSQKCLSAPPG--LAPIAA---SLEARKAFTG 209 (353)
T ss_dssp HHHTCEEEEECTTTTTT----S-CCCHHHH--------T---CSEEECCTTSTTCCCSS--CEEEEE---CHHHHHHCCC
T ss_pred HHcCCeEEEEcCccccc----c-ccccccc--------C---ceEEEecCcccccCCCc--eEEEEE---CHHHHHHhcc
Confidence 99999999999996421 1 1233332 2 13788999997756667 699995 8888776641
Q ss_pred -------------h--hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 041151 302 -------------I--AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 302 -------------~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~ 364 (463)
. .. ..++.+...+.++.++++ ....+ .++++++++++++++.+.|+++ |+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 278 (353)
T 2yrr_A 210 KRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALD----------LVLEEGVAARERRAREVYAWVLEELKAR-GFRP 278 (353)
T ss_dssp CSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred CCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCcc
Confidence 0 11 234556666666666652 12233 5567889999999999999988 8887
Q ss_pred ccCC--ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHH-HH
Q 041151 365 NFTE--GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMP-AI 439 (463)
Q Consensus 365 ~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~-~~ 439 (463)
..+. +++++|+.+ |.+. +..++. +.|.++||.+.+|..|.. .+++|+++. .++++++ ++
T Consensus 279 ~~~~~~~~~~~~~~~--~~~~----------~~~~~~-~~l~~~gi~v~~g~~~~~---~~~iRi~~~~~~~~~~~~~~~ 342 (353)
T 2yrr_A 279 YPKASPLPTVLVVRP--PEGV----------DADRLV-RALYAEGVAVAGGIGPTR---GQVLRLGLMGEGARREAYQAF 342 (353)
T ss_dssp SCSSSBCTTEEEEEC--CTTC----------CHHHHH-HHHHHTTEECEECCGGGT---TTCEEEECSGGGSCHHHHHHH
T ss_pred ccCccCCCeEEEEEC--CCCC----------CHHHHH-HHHHHCCEEEeCCccccC---CCeEEEecCccCCHHHHHHHH
Confidence 7654 566767544 3221 234444 456667999999987653 247999994 7888999 99
Q ss_pred HHHHHHHHH
Q 041151 440 MESFKKFND 448 (463)
Q Consensus 440 ~~~l~~~l~ 448 (463)
+++|+++++
T Consensus 343 ~~~l~~~l~ 351 (353)
T 2yrr_A 343 LKALDRALA 351 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998875
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=244.16 Aligned_cols=326 Identities=11% Similarity=0.031 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-------CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-------GE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------~~ 154 (463)
|+.+++++.+++... ..|.+..+..++++++++++.+.++ .+.++|++|+|+++++..+++++.. .+
T Consensus 47 ~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~ 120 (430)
T 3i4j_A 47 RAEVGERMAAQAARL----PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEATESAVKLARQYHVERGEPG 120 (430)
T ss_dssp CHHHHHHHHHHHHHC----CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHHhc----ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 788999999888762 2344445666788888888877665 4567999999999999999998851 23
Q ss_pred CCEEEEc----cCcee---------------------------cC-CC---cccChHHHHHHHHHHHHhcCCceeEEEEE
Q 041151 155 GDGVVLL----FHTTW---------------------------KR-QQ---IGVLIINDLQQSVAQARSKGITVRAMVII 199 (463)
Q Consensus 155 gd~Vlvp----~g~~~---------------------------~~-~~---~~~d~~~~l~~~l~~~~~~~~~~~~i~l~ 199 (463)
++.|+++ +|... +. +. ...|+ +.|++.++.... .++++|+++
T Consensus 121 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~le~~l~~~~~--~~~~~vi~~ 197 (430)
T 3i4j_A 121 RFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDA-EGLRALLEREGP--ETVAAFMAE 197 (430)
T ss_dssp CCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHH-THHHHHHHHHCG--GGEEEEEEC
T ss_pred CcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHH-HHHHHHHHhcCC--CCEEEEEEc
Confidence 6788875 11110 00 00 12366 889998875210 145555544
Q ss_pred CCCC-CCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 200 NPGN-PTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 200 ~p~N-PtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
.+|| ++|. +++.+++++|.++|++||++||+||+|.++... +. ...... .++. .. .+.||||++ +
T Consensus 198 p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~-g~-~~~~~~-~~~~----~~-----di~t~sK~l-~ 264 (430)
T 3i4j_A 198 PVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRC-GS-PLALSR-WSGV----TP-----DIAVLGKGL-A 264 (430)
T ss_dssp SSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSGGGG-TTTC----CC-----SEEEECGGG-T
T ss_pred CcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc-cc-hhhhhh-hcCC----CC-----cEEEEcccc-c
Confidence 4466 8886 678888999999999999999999999987552 22 112111 0011 11 134799999 6
Q ss_pred CCC-ceeEEEEecCCChhHHHHHHhh-----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041151 278 ECG-QRGGYFEMTNIPPKTVDEIYKI-----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARM 351 (463)
Q Consensus 278 ~~G-~R~G~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (463)
+| +|+||++ +++++++.+.+. ...+++.+++.|.++.++|+ .... +...++++++.+.
T Consensus 265 -~G~~r~G~~~---~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~ 328 (430)
T 3i4j_A 265 -AGYAPLAGLL---AAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLD-----------IVER-EDLTGAAKERGAQ 328 (430)
T ss_dssp -TTSSCCEEEE---ECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHH
T ss_pred -CCccccEEEE---ECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHH-----------HHHc-ccHHHHHHHHHHH
Confidence 59 9999999 599999999873 33567889999999988874 1111 2233344444444
Q ss_pred HH----HHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEE
Q 041151 352 MT----DGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRT 427 (463)
Q Consensus 352 l~----~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRi 427 (463)
+. +.+.++|++....+.|.|+ ++.+. .... ...+.......++ ...|.++||.++|+..+....+.+++||
T Consensus 329 ~~~~l~~~~~~~~~~~~~~~~g~~~-~~~~~--~~~~-~~~~~~~~~~~~~-~~~l~~~Gv~v~~~~~~~~~~~~~~iRi 403 (430)
T 3i4j_A 329 LLAGLQALQARFPQMMQVRGTGLLL-GVVLG--DLAT-GQAFETPGIASRI-GAAALKRGLITYPGSGAEPNGRGDHLLL 403 (430)
T ss_dssp HHHHHHHHHHHCTTEEEEEEETTEE-EEEEC---------------CHHHH-HHHHHHTTEECC-----------CEEEE
T ss_pred HHHHHHHHHHhCCCeEEEEEEEEEE-EEEec--cccc-cCCCccHHHHHHH-HHHHHhCCCEEEecccccCCCCCCEEEE
Confidence 44 4444456676666666644 43332 1100 0000000011334 4556688999999853333234568999
Q ss_pred Eec--CCcCcHHHHHHHHHHHHHHH
Q 041151 428 TIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 428 s~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+++ .+++++++++++|+++++++
T Consensus 404 ~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 404 GPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 998 78899999999999998764
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=239.41 Aligned_cols=306 Identities=11% Similarity=0.007 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
++.+++++.+.+.. ....|++ .++++++++++.+.+| .+++|++|+|+++++..++.++. ++||.|+++
T Consensus 21 ~~~v~~a~~~~~~~---~~~~~~~----~~~~~~l~~~la~~~g---~~~~v~~~~~gt~a~~~al~~~~-~~gd~vi~~ 89 (356)
T 1v72_A 21 SPEVAQALVKHSSG---QAGPYGT----DELTAQVKRKFCEIFE---RDVEVFLVPTGTAANALCLSAMT-PPWGNIYCH 89 (356)
T ss_dssp CHHHHHHHHHTTSS---CCCSTTC----SHHHHHHHHHHHHHHT---SCCEEEEESCHHHHHHHHHHTSC-CTTEEEEEC
T ss_pred CHHHHHHHHhhccC---ccccccc----chHHHHHHHHHHHHhC---CCCcEEEeCCccHHHHHHHHHhc-CCCCEEEEc
Confidence 78888888776532 1234543 3444555555544445 24479999999999999999987 899999997
Q ss_pred ---------c--------Ccee---cCCCcccChHHHHHH-HHHHHH-hcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 162 ---------F--------HTTW---KRQQIGVLIINDLQQ-SVAQAR-SKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 162 ---------~--------g~~~---~~~~~~~d~~~~l~~-~l~~~~-~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
. |.++ +.+.+.+|+ +.|++ .+++.. ..++++++|++++||| ||.+++.+++++|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~ 167 (356)
T 1v72_A 90 PASHINNDECGAPEFFSNGAKLMTVDGPAAKLDI-VRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGD 167 (356)
T ss_dssp TTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCH-HHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHH
T ss_pred CccchhhhhchHHHHHhCCcEEEEecCCCCeEcH-HHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHH
Confidence 2 6666 334578899 99999 876410 1122589999999987 999999999999999
Q ss_pred HhhhCCeEEEecccccccccC-CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQ-DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~ 298 (463)
+|++||++||+|++|..+... .+.....+ .+ ..... +++.|+||+. + ...+||++ +++++++.
T Consensus 168 ~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~~--------~~~~d-~~~~s~sK~g-~--~~G~g~~~---~~~~~~~~ 231 (356)
T 1v72_A 168 VCKSSSLGLHMDGSRFANALVSLGCSPAEM-TW--------KAGVD-ALSFGATKNG-V--LAAEAIVL---FNTSLATE 231 (356)
T ss_dssp HHHHTTCEEEEEETTHHHHHHHHTCCTTTT-TG--------GGTCC-EEEECCGGGT-C--SSCEEEEE---SSGGGHHH
T ss_pred HHHHcCCeEEEEchhhHhHhccCCCCHHHh-hh--------hhcCC-EEEEecccCC-C--cCccEEEE---ECHHHHhh
Confidence 999999999999999754210 11111111 00 00112 3456999962 2 22234887 58889888
Q ss_pred HHhhhh-hc-ccC-ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEee
Q 041151 299 IYKIAS-IA-LSP-NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375 (463)
Q Consensus 299 l~~~~~-~~-~~~-~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~ 375 (463)
+..... .. ... +...+..+...++. ..+ .+..++++++++++.+.|++++|+.+..|.+++++|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~-------~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 299 (356)
T 1v72_A 232 MSYRRKRAGHLSSKMRFLSAQIDAYLTD-----DLW-------LRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFC 299 (356)
T ss_dssp HHHHHHHTTCCCSSTHHHHHHHHHHTST-----THH-------HHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEE
T ss_pred HHHHhhccCchhhhHHHHHHHHHHHHHh-----hhH-------HHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEE
Confidence 876543 11 112 22333333444431 111 1245567888899999999888998877788888886
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+++ .+++.. |.++||.+.||. |+ .+++|+++. .+++++++++++|++++++..
T Consensus 300 ~~~-----------------~~~~~~-l~~~gi~v~~g~-~~----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~ 354 (356)
T 1v72_A 300 RLD-----------------SAMIDA-LLKAGFGFYHDR-WG----PNVVRFVTSFATTAEDVDHLLNQVRLAADRTQ 354 (356)
T ss_dssp EEC-----------------HHHHHH-HHHTTCBCBCSS-SS----TTEEEEECCTTCCHHHHHHHHHHHHHTC----
T ss_pred EcC-----------------HHHHHH-HHhcCeEEeccc-cC----CCeEEEEecCCCCHHHHHHHHHHHHHHHHhhc
Confidence 543 133434 567899999987 54 348999987 688999999999998876643
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=243.83 Aligned_cols=365 Identities=16% Similarity=0.154 Sum_probs=244.4
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
-+.|+..++++.+..+...+.++...|.++++++.|++.. +| . +. ..++.+.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~yl------D~----------~-----~~---~~~~~v~~a~~ 62 (467)
T 1ax4_A 7 EPFRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYI------DL----------L-----TD---SGTNAMSDHQW 62 (467)
T ss_dssp CSEEEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSE------EC----------S-----CS---SSCCCEEHHHH
T ss_pred ChhhhceeecccccchhHHHHHHHhcCcCcccCCCCceee------ec----------c-----cC---cCCHHHHHHHH
Confidence 3467778899999888888888988899999999887632 00 0 00 00245556666
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC----CCCE---EEEc--
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG----EGDG---VVLL-- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----~gd~---Vlvp-- 161 (463)
+.+.. ....|++..+..+||++++++++ .++|++|+|+++++..++.++. + +||. |+++
T Consensus 63 ~~~~~---~~~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~ggt~A~~~al~~~~-~~~~~~Gd~~~~viv~~~ 130 (467)
T 1ax4_A 63 AAMIT---GDEAYAGSRNYYDLKDKAKELFN--------YDYIIPAHQGRGAENILFPVLL-KYKQKEGKAKNPVFISNF 130 (467)
T ss_dssp HHHHT---CCCCSSSCHHHHHHHHHHHHHHC--------CCEEEEESSHHHHHHHHHHHHH-HHHHHTTCCSSCEEEESS
T ss_pred HHHhh---cccccccCccHHHHHHHHHHHcC--------CCcEEEcCCcHHHHHHHHHHHH-HhhccCCCccceEEEecc
Confidence 66544 23468777788999999999984 3799999999999999999997 8 9998 8886
Q ss_pred -----------cCcee---cC-----------CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHH
Q 041151 162 -----------FHTTW---KR-----------QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLR 215 (463)
Q Consensus 162 -----------~g~~~---~~-----------~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~ 215 (463)
.|.++ +. ..+.+|+ +.|++++++.. .+++++|++++||||| |.+++.++++
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~ 207 (467)
T 1ax4_A 131 HFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDI-KKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLK 207 (467)
T ss_dssp CCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCH-HHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHH
T ss_pred ccchhhHHHhccCCceecccccccccccccCCcccccCH-HHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHH
Confidence 23333 10 1346899 99999998631 0158999999999999 8999999999
Q ss_pred HHHHHhhhCCeEEEecccccc--c--------ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 216 EILRFCYQENLVLLGDEVYQQ--N--------IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~--~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
+|+++|++||++||+|+++.. . .+ .+ .++..+.+++ ..... +++.|+||++ |++ + .||
T Consensus 208 ~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~----~~~~d-~~~~s~sK~~-g~~-~-Gg~ 275 (467)
T 1ax4_A 208 EVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY-KN---ATIKEVIFDM----YKYAD-ALTMSAKKDP-LLN-I-GGL 275 (467)
T ss_dssp HHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGG-TT---CCHHHHHHHH----GGGCS-EEEEETTSTT-CCS-S-CEE
T ss_pred HHHHHHHHcCCEEEEEchhhhhcchhcccccccc-CC---Cchhhhhhhh----ccccc-eEEEeccccC-CCC-c-ceE
Confidence 999999999999999998653 1 12 11 2333332111 01111 4568999988 665 0 267
Q ss_pred EEecCCC-h-hHHHHHHhhhh-h----cc-cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 286 FEMTNIP-P-KTVDEIYKIAS-I----AL-SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 286 ~~~~~~~-~-~~~~~l~~~~~-~----~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
++. + + ++++.+..... . .. ..+...+.++...++ ...+ ++..+...++++++.+.|+
T Consensus 276 ~~~---~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~----------~~~~--~~~~~~~~~~~~~l~~~L~ 340 (467)
T 1ax4_A 276 VAI---RDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLE----------EGTE--EEYLHYRIGQVKYLGDRLR 340 (467)
T ss_dssp EEE---SSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHH----------HTTC--HHHHHHHHHHHHHHHHHHH
T ss_pred EEe---CCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHH----------Hhhh--hhHHHHHHHHHHHHHHHHH
Confidence 763 4 6 78887765532 1 11 222222232222331 0111 0122223466778888888
Q ss_pred cCCCcccccCCceeEEeeecc-----CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC-CCCC-CCC--------CCC
Q 041151 358 SCRNVVCNFTEGAMYSFPQIR-----LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP-GSGF-GQK--------EGI 422 (463)
Q Consensus 358 ~~pg~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p-g~~f-~~~--------~~~ 422 (463)
+ +|+.+..|.+++++|+++. ++... .+..+++..++.++||.+.| |..| +.. ...
T Consensus 341 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~ 410 (467)
T 1ax4_A 341 E-AGIPIQYPTGGHAVFVDCKKLVPQIPGDQ---------FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADM 410 (467)
T ss_dssp H-TTCCBCSSCCSSEEEEESTTTCTTSCGGG---------CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred h-CCCCcccCCCceEEEEehhhhccccccCC---------CCHHHHHHHHHHhcCceeeecCcccccccccccccccccc
Confidence 7 4888878889999997732 22110 02345555555889999999 6532 210 123
Q ss_pred cEEEEEec---CCcCcHHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL---PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 423 ~~lRis~~---~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+++||+++ .+++++++++++|++++++..
T Consensus 411 ~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~ 442 (467)
T 1ax4_A 411 EFMRLTIARRVYTNDHMDYIADALIGLKEKFA 442 (467)
T ss_dssp CEEEEECCTTSSCHHHHHHHHHHHHTTHHHHT
T ss_pred ceEEEecccccCCHHHHHHHHHHHHHHHHhhh
Confidence 68999998 688999999999999988753
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=237.54 Aligned_cols=301 Identities=11% Similarity=0.029 Sum_probs=209.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC--CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--CCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS--RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--GEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~ 157 (463)
++.+++++.+.... .|.+. ....++++++++++....+ +++++|++|+|+++++..++.++.. ++||+
T Consensus 17 ~~~v~~a~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~ 88 (385)
T 2bkw_A 17 SGAVQKALDVPSLG------HTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIFASNFILSKAPNKN 88 (385)
T ss_dssp CHHHHHTTSCCCCC------TTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHHHHHHHSCTTCSCCE
T ss_pred hHHHHHHHhccccc------cCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHHHHHHHhccCCCCCe
Confidence 67777665433221 12221 1345677888888764333 4578999999999999999999841 58999
Q ss_pred EEEc---------------cCcee----c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHH
Q 041151 158 VVLL---------------FHTTW----K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREI 217 (463)
Q Consensus 158 Vlvp---------------~g~~~----~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l 217 (463)
|+++ .|.++ . +.++.+|+ +.|++++++. ++++|++++|+||||.+++ +++|
T Consensus 89 vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~---l~~i 159 (385)
T 2bkw_A 89 VLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPL-ELITEKLSQN-----SYGAVTVTHVDTSTAVLSD---LKAI 159 (385)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCH-HHHHHHHHHS-----CCSEEEEESEETTTTEECC---HHHH
T ss_pred EEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCH-HHHHHHHhcC-----CCCEEEEEccCCCcCeEcC---HHHH
Confidence 8664 45555 2 45567899 9999999862 6899999999999999998 6688
Q ss_pred HHHhhhC--CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH
Q 041151 218 LRFCYQE--NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295 (463)
Q Consensus 218 ~~~a~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 295 (463)
+++|+++ |++||+|++|+.... + .++ ...+..+++.|+||+++|++| +||+++ ++++
T Consensus 160 ~~~~~~~~~~~~li~D~a~~~~~~----~-~~~-----------~~~~~d~~~~s~~K~~~~~~G--~G~~~~---~~~~ 218 (385)
T 2bkw_A 160 SQAIKQTSPETFFVVDAVCSIGCE----E-FEF-----------DEWGVDFALTASQKAIGAPAG--LSISLC---SSRF 218 (385)
T ss_dssp HHHHHHHCTTSEEEEECTTTTTTS----C-CCT-----------TTTTCSEEEEESSSTTCCCSC--EEEEEE---CHHH
T ss_pred HHHHHhhCCCCEEEEECccccCCc----c-ccc-----------cccCceEEEecCccccccCCc--ceEEEE---cHHH
Confidence 8899999 999999999974321 1 122 112245788999998755677 499985 7777
Q ss_pred HH-HHH----------------------hhhhh----cccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHH
Q 041151 296 VD-EIY----------------------KIASI----ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRR 347 (463)
Q Consensus 296 ~~-~l~----------------------~~~~~----~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 347 (463)
++ .+. ..... ..+.+...+.++.++++ ....+ .+++++++++
T Consensus 219 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~ 288 (385)
T 2bkw_A 219 MDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALK----------EILEEGLHKRWDLHRE 288 (385)
T ss_dssp HHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHH
T ss_pred HHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHccHHHHHHHHHH
Confidence 66 442 11110 13456666666666652 12222 4567888999
Q ss_pred HHHHHHHHh-hcCCCcccccCC-----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 348 RARMMTDGF-NSCRNVVCNFTE-----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 348 ~~~~l~~~L-~~~pg~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
+++++.+.| +++ |+.+..++ .+.++|+.++ . ..+++ +.|.++||.+.+|..+.. +
T Consensus 289 ~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~-~~l~~~gi~v~~g~~~~~--~ 349 (385)
T 2bkw_A 289 MSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVA--D-------------PPDVI-AFLKSHGVVIAGGIHKDI--G 349 (385)
T ss_dssp HHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECS--C-------------HHHHH-HHHHHTTEECBCCCCTTT--G
T ss_pred HHHHHHHHHHHhc-CceecccCcccccCCceEEEecC--C-------------HHHHH-HHHHHCCeEEeCCCCccc--C
Confidence 999999999 888 88876532 4566775443 1 23444 445678999999887643 3
Q ss_pred CcEEEEE-ec-----CCcCcHHHHHHHHHHHHHH
Q 041151 422 IFHLRTT-IL-----PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 422 ~~~lRis-~~-----~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++||+ ++ .+++++++++++|++++++
T Consensus 350 ~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 350 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp GGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred CCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 4589999 66 5889999999999988754
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=238.00 Aligned_cols=279 Identities=11% Similarity=0.085 Sum_probs=201.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEE-EcCCcHHHHHHHHHHHhcCCCCEEEEc---------------cCcee----cC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIF-LTDGASKGVMQTLNCVIRGEGDGVVLL---------------FHTTW----KR 168 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~-~t~G~~~al~~~~~~l~~~~gd~Vlvp---------------~g~~~----~~ 168 (463)
..++++.+++++ | .++++++ +++|+++++..++.+++ ++||+|+++ .|.++ ..
T Consensus 46 ~~~l~~~la~~~----g--~~~~~~~~~~~s~t~al~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 118 (416)
T 3isl_A 46 MNETMEMLRELF----Q--TKNRWAYPIDGTSRAGIEAVLASVI-EPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE 118 (416)
T ss_dssp HHHHHHHHHHHT----T--CCCSEEEEEESCHHHHHHHHHHHHC-CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHh----C--CCCCcEEEecCcHHHHHHHHHHHhc-CCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC
Confidence 345555555555 4 4566565 88899999999999997 999999997 35554 33
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
.++.+|+ +.|++++++. ++++|++++|+||||.+++ +++|.++|++||++||+|++|+.... ...+
T Consensus 119 ~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~ 184 (416)
T 3isl_A 119 WGTVFDP-EDIIREIKKV-----KPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGC-----EVKV 184 (416)
T ss_dssp TTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTS-----CCCT
T ss_pred CCCCCCH-HHHHHHHhhC-----CCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCC-----Ccch
Confidence 4567899 9999999843 7999999999999999998 77788899999999999999875322 1111
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-------------------------
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA------------------------- 303 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~------------------------- 303 (463)
...+..+++.|+||+++|.+ ++|++++ ++++++.+....
T Consensus 185 -----------~~~~~d~~~~s~~K~l~g~~--g~g~~~~---~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~ 248 (416)
T 3isl_A 185 -----------DEWKIDAAIGGTQKCLSVPS--GMAPITY---NERVADVIAARKKVERGIATQADRAALSGNRPITSNY 248 (416)
T ss_dssp -----------TTTTCSEEECCSSSTTCCCS--SEEEEEE---CHHHHHHHHTC------------------CCCCSCST
T ss_pred -----------hhcCCCEEEecCccccCCCC--CeEEEEE---CHHHHHHhhccccccccccccccchhccCCCCCCccc
Confidence 11224589999999864544 4899984 888888886431
Q ss_pred -----------h---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 041151 304 -----------S---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRNVVCNFTE 368 (463)
Q Consensus 304 -----------~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~ 368 (463)
. ...+.+...+.++.++++ ....+ .++++++++++++++.+.|++. |+.+..++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 317 (416)
T 3isl_A 249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVR----------LVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDD 317 (416)
T ss_dssp TCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCG
T ss_pred cchHHHHhhhcccCCCCCCCCHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCc
Confidence 1 123445666666655542 22333 5678889999999999999996 88887775
Q ss_pred c---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc-HHHHHHH
Q 041151 369 G---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED-MPAIMES 442 (463)
Q Consensus 369 g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~-i~~~~~~ 442 (463)
+ +.+++ +.+|.+ .+..++...+++++||.+.+|.... ..+++||++. .+.++ +++++++
T Consensus 318 ~~~~~~~~~--~~~~~~----------~~~~~l~~~L~~~~gi~v~~g~~~~---~~~~iRi~~~~~~~~~e~i~~~~~~ 382 (416)
T 3isl_A 318 SCKMPVVTC--VEIPGG----------IDGESVRDMLLAQFGIEIASSFGPL---AGKIWRIGTMGYSCRKENVLFVLAG 382 (416)
T ss_dssp GGBCTTEEE--EECCTT----------CCHHHHHHHHHHHHCEECBCCCSTT---TTTEEEEECCGGGCSHHHHHHHHHH
T ss_pred cccCCcEEE--EeCCCC----------CCHHHHHHHHHHhCCEEEecCCCCC---CCCEEEEecccCCCcHHHHHHHHHH
Confidence 4 34555 344432 1245666665566699999987432 3458999994 55566 9999999
Q ss_pred HHHHHHHH
Q 041151 443 FKKFNDEF 450 (463)
Q Consensus 443 l~~~l~~~ 450 (463)
|+++++++
T Consensus 383 l~~~~~~~ 390 (416)
T 3isl_A 383 LEAVLLRH 390 (416)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998764
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=243.92 Aligned_cols=299 Identities=14% Similarity=0.099 Sum_probs=203.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC------CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG------EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------~g 155 (463)
++.+++++.+++.........| ..++++++++.+.+.+| +++|++|+|+++++..++.++. . +|
T Consensus 58 ~~~v~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~~al~~~~-~~~~~~~~~ 127 (397)
T 2ord_A 58 HPRLVEAIKDQAEKLIHCSNLF-----WNRPQMELAELLSKNTF----GGKVFFANTGTEANEAAIKIAR-KYGKKKSEK 127 (397)
T ss_dssp CHHHHHHHHHHHHHCSCCCTTS-----EEHHHHHHHHHHHHTTT----SCEEEEESSHHHHHHHHHHHHH-HHHHHHCTT
T ss_pred CHHHHHHHHHHHHhcccCcccc-----CCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHH-HHhhcCCCC
Confidence 7889999988887631111112 13455556666555444 5899999999999999999885 3 54
Q ss_pred -CEEEEc---c-----------Ccee-c---------CCCc-ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc-C
Q 041151 156 -DGVVLL---F-----------HTTW-K---------RQQI-GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ-C 208 (463)
Q Consensus 156 -d~Vlvp---~-----------g~~~-~---------~~~~-~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~-~ 208 (463)
+.|+++ + |.+. . .... ..|+ +.|++.+++ ++++|++++|+||||. +
T Consensus 128 ~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~nptG~~~ 200 (397)
T 2ord_A 128 KYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNV-EDLRRKMSE------DVCAVFLEPIQGESGIVP 200 (397)
T ss_dssp CCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCH-HHHHHHCCT------TEEEEEECSEECTTTCEE
T ss_pred CceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCCCH-HHHHHHhhc------CeEEEEEecccCCCCccc
Confidence 667764 2 2110 0 0000 1378 999998876 7999999999999999 9
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
++.+++++|+++|+++|++||+||+|..+.+. +. ..++..+ +....+ .||||++ + +|+|+||+++
T Consensus 201 ~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~-g~-~~~~~~~--------~~~~d~---~s~sK~~-~-~G~r~G~~~~ 265 (397)
T 2ord_A 201 ATKEFLEEARKLCDEYDALLVFDEVQCGMGRT-GK-LFAYQKY--------GVVPDV---LTTAKGL-G-GGVPIGAVIV 265 (397)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSHHHHH--------TCCCSE---EEECGGG-G-TTSCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecccCCccC-cc-chhhhhh--------CCCCCe---eeecccc-C-CCcCeEEEEE
Confidence 99999999999999999999999999876542 22 2222222 211122 2889999 6 8999999995
Q ss_pred cCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-Cccc--
Q 041151 289 TNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR-NVVC-- 364 (463)
Q Consensus 289 ~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p-g~~~-- 364 (463)
+++++ .+.... ..+++.+.+.|.++.++|+. ..+ ++++++++++++++.+.|++++ ++..
T Consensus 266 ---~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~-----------~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 329 (397)
T 2ord_A 266 ---NERAN-VLEPGDHGTTFGGNPLACRAGVTVIKE-----------LTK-EGFLEEVEEKGNYLMKKLQEMKEEYDVVA 329 (397)
T ss_dssp ---CSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHH-----------HTS-TTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred ---chHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHH-----------HHh-CCHHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 66665 554322 24567788999888887641 111 3466778888888888887642 2222
Q ss_pred -ccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 365 -NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 365 -~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
..+.| .++|+++. .. .+..++.. .|.++||.+.|+. .+++||+++ .++++++++++
T Consensus 330 ~~~~~g-~~~~~~~~--~~----------~~~~~l~~-~l~~~gi~v~~~~-------~~~iRis~~~~~~~e~i~~~~~ 388 (397)
T 2ord_A 330 DVRGMG-LMIGIQFR--EE----------VSNREVAT-KCFENKLLVVPAG-------NNTIRFLPPLTVEYGEIDLAVE 388 (397)
T ss_dssp EEEEET-TEEEEEEC--TT----------SCHHHHHH-HHHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHH
T ss_pred EEEEEe-EEEEEEEC--Ch----------HHHHHHHH-HHHHCCCEEccCC-------CCEEEEECCcCCCHHHHHHHHH
Confidence 23344 55665543 21 02344444 4556899999962 348999965 78999999999
Q ss_pred HHHHHHHH
Q 041151 442 SFKKFNDE 449 (463)
Q Consensus 442 ~l~~~l~~ 449 (463)
+|++++++
T Consensus 389 ~l~~~l~~ 396 (397)
T 2ord_A 389 TLKKVLQG 396 (397)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99988753
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=238.58 Aligned_cols=302 Identities=10% Similarity=0.012 Sum_probs=213.4
Q ss_pred CCcHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCc-EEEcCCcHHHHHHHHHHHhcCCCC
Q 041151 80 VFPADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPEL-IFLTDGASKGVMQTLNCVIRGEGD 156 (463)
Q Consensus 80 ~~p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~-i~~t~G~~~al~~~~~~l~~~~gd 156 (463)
.+++.+++++.+.+. ..|.+ .....++++.+++++ | .+.++ |++|+|+++++..++.+++ ++||
T Consensus 23 ~~~~~v~~a~~~~~~------~~~~~~~~~~~~~~~~~la~~~----~--~~~~~~v~~~~sgt~al~~~~~~~~-~~gd 89 (411)
T 3nnk_A 23 NADPRVLRAMSSQLI------GQYDPAMTHYMNEVMALYRGVF----R--TENRWTMLVDGTSRAGIEAILVSAI-RPGD 89 (411)
T ss_dssp CCCHHHHHHHTSCCC------CTTCHHHHHHHHHHHHHHHHHH----T--CCCSEEEEEESCHHHHHHHHHHHHC-CTTC
T ss_pred CCCHHHHHHhhcccc------ccccHHHHHHHHHHHHHHHHHh----C--CCCCcEEEECCCcHHHHHHHHHHhc-CCCC
Confidence 347888777654321 12221 112245556666555 4 34454 8888999999999999997 9999
Q ss_pred EEEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHH
Q 041151 157 GVVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREI 217 (463)
Q Consensus 157 ~Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l 217 (463)
+|+++ .|.++ ...++.+|+ +.|++++++. ++++|++++|+||||.+.+ +++|
T Consensus 90 ~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~---l~~i 160 (411)
T 3nnk_A 90 KVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTP-DQVEDAVKRI-----RPRLLLTVQGDTSTTMLQP---LAEL 160 (411)
T ss_dssp EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTH
T ss_pred EEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCH-HHHHHHHhhC-----CCeEEEEeCCCCCcceecc---HHHH
Confidence 99997 34444 344677899 9999999864 7999999999999999988 7788
Q ss_pred HHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH
Q 041151 218 LRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 218 ~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
.++|++||++||+|++|+.... ...+ ...+..+++.|+||++++.+ ++||+++ ++++++
T Consensus 161 ~~l~~~~~~~li~Dea~~~~~~-----~~~~-----------~~~~~d~~~~s~~K~l~~~~--g~g~~~~---~~~~~~ 219 (411)
T 3nnk_A 161 GEICRRYDALFYTDATASLGGN-----PLET-----------DVWGLDAVSAGMQKCLGGPS--GTSPITL---SARMEE 219 (411)
T ss_dssp HHHHHHHTCEEEEECTTTBTTB-----CCCT-----------TTTTCSEEECCSTTTTCCCS--SEEEEEE---CHHHHH
T ss_pred HHHHHHcCCEEEEECCcccCCc-----ccch-----------hccCCcEEEecCccccCCCC--ceEEEEE---CHHHHH
Confidence 8899999999999999875322 1111 22224589999999864544 5899994 888988
Q ss_pred HHHhhh------------------------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HH
Q 041151 298 EIYKIA------------------------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SK 339 (463)
Q Consensus 298 ~l~~~~------------------------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~ 339 (463)
.+.+.. . ...+.+...+.++..+++ ....+ ++
T Consensus 220 ~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~g~~ 289 (411)
T 3nnk_A 220 AIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECAR----------LILQEGLD 289 (411)
T ss_dssp HHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH----------HHHHHCHH
T ss_pred HHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHH----------HHHHhhHH
Confidence 887643 0 113445556666555542 22333 56
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC
Q 041151 340 GILESLRRRARMMTDGFNSCRNVVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 340 ~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
+++++++++++++.+.|+++ |+.+..+.+ +.++++ .+|.+. +..++...+++++||.+++|...
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~l~~~l~~~~gi~v~~g~~~ 356 (411)
T 3nnk_A 290 YGIARHKLHGDALVKGIQAM-GLETFGDLKHKMNNVLGV--VIPQGI----------NGDQARKLMLEDFGIEIGTSFGP 356 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEE--ECCTTC----------CHHHHHHHHHHHHSEEEEECCGG
T ss_pred HHHHHHHHHHHHHHHHHHHc-CCEeCCCcccccccEEEE--ECCCCC----------CHHHHHHHHHHhcCeEEeCccCC
Confidence 78889999999999999987 888776654 456664 444321 24555556666679999998432
Q ss_pred CCCCCCcEEEEEe-c--CCcCcHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTI-L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 417 ~~~~~~~~lRis~-~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
. ..+++||++ + .+++++++++++|+++++++
T Consensus 357 ~---~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 357 L---HGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp G---TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred C---CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 2 235899998 5 47899999999999998765
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=235.99 Aligned_cols=301 Identities=13% Similarity=0.057 Sum_probs=198.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
++.+++++.+.... ...|.+..+..+||++++++++ . +++++++|+++++..++.+++ +|||+|+++
T Consensus 17 ~~~~~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g------~--~~~~~~~~gt~a~~~~~~~~~-~~gd~Vl~~ 83 (347)
T 1jg8_A 17 TEEMRKAMAQAEVG----DDVYGEDPTINELERLAAETFG------K--EAALFVPSGTMGNQVSIMAHT-QRGDEVILE 83 (347)
T ss_dssp CHHHHHHHHTCCCC----CGGGTCCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred CHHHHHHHhcCCCC----CcccCCChHHHHHHHHHHHHhC------C--ceEEEecCcHHHHHHHHHHhc-CCCCEEEEc
Confidence 56677776544321 2367777788999999999985 2 467778888899999999997 899999997
Q ss_pred ----------------cCcee--c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHHh
Q 041151 162 ----------------FHTTW--K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRFC 221 (463)
Q Consensus 162 ----------------~g~~~--~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~a 221 (463)
.|+++ . ...+.+|+ +.|++++++.....+++++|++++||||| |.+++.+++++|+++|
T Consensus 84 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~-~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a 162 (347)
T 1jg8_A 84 ADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDP-DDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIA 162 (347)
T ss_dssp TTCHHHHSSTTHHHHHTCCEEEEECEETTEECH-HHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred CcchhhhccccchhhccCeEEEEecCCCCccCH-HHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHH
Confidence 13333 2 22345799 99999886310001158999999999999 9999999999999999
Q ss_pred hhCCeEEEecccccccc--cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 222 YQENLVLLGDEVYQQNI--YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+++|++||+|++|.... + .+. +...+.... + +++.|+||++ +++ +||+++ +++++++.+
T Consensus 163 ~~~~~~li~D~a~~~~~~~~-~~~---~~~~~~~~~-------d--~~~~s~sK~l-~~~---~G~~~~--~~~~~~~~~ 223 (347)
T 1jg8_A 163 KEHGINVHIDGARIFNASIA-SGV---PVKEYAGYA-------D--SVMFCLSKGL-CAP---VGSVVV--GDRDFIERA 223 (347)
T ss_dssp HHHTCEEEEEETTHHHHHHH-HCC---CHHHHHHTC-------S--EEEEESSSTT-CCS---SCEEEE--ECHHHHHHH
T ss_pred HHCCCEEEeehhhhhcchhh-cCC---ChHHhcccc-------c--EEEEeccccc-CCC---ceEEEE--cCHHHHHHH
Confidence 99999999999875321 2 111 222221111 1 2345899998 543 575433 588888888
Q ss_pred Hhhhh-hcc--cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEee
Q 041151 300 YKIAS-IAL--SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFP 375 (463)
Q Consensus 300 ~~~~~-~~~--~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~ 375 (463)
.+++. ... ..+.+.+.++...++ .+.+ .+. +..++++.+.+.|+++ |+.+. .+..+.|+|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~---~~~-~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~ 288 (347)
T 1jg8_A 224 RKARKMLGGGMRQAGVLAAAGIIALT----------KMVD---RLK-EDHENARFLALKLKEI-GYSVNPEDVKTNMVIL 288 (347)
T ss_dssp HHHHHHHTCCCSSTHHHHHHHHHHHH----------HSST---THH-HHHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEE
T ss_pred HHHHHHcCCchhHHHHHHHHHHHHHH----------HHHH---HHH-HHHHHHHHHHHHHHhc-CceeccCCCcceEEEE
Confidence 76654 222 223344444444432 1111 112 2234667788888877 76642 2334456775
Q ss_pred eccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
.++. .+ .+..+++.. |.++||.++++. .+++|+++. .+++++++++++|++++++
T Consensus 289 ~~~~-~~----------~~~~~~~~~-l~~~gi~v~~~~-------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 289 RTDN-LK----------VNAHGFIEA-LRNSGVLANAVS-------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp ECTT-SS----------SCHHHHHHH-HHHHTEECEEEE-------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred Eccc-cc----------CCHHHHHHH-HHHCCCEEecCC-------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 5431 01 124455544 557899999842 247999996 6889999999999998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-27 Score=233.77 Aligned_cols=303 Identities=13% Similarity=0.115 Sum_probs=206.5
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
+|+.+++++.+.+.. .|.+ +..++.+++++++.+.+|.+.+.+.+++|+|+++++..++.+++ ++||+|++
T Consensus 30 ~~~~v~~a~~~~~~~------~~~~--~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~-~~gd~vi~ 100 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY------FRTT--EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF-TKKDKVLV 100 (376)
T ss_dssp CCHHHHHHHTSCCCC------CSSH--HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC-CTTCCEEE
T ss_pred CcHHHHHHhcCCCCC------CCCH--HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc-CCCCeEEE
Confidence 388888887654322 2222 23456666666666666664333456669999999999999997 89999988
Q ss_pred c---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+ .|.++ ...++.+|+ +.|++.+++ ++++|++++|+||||.+++ +++|.++|
T Consensus 101 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~~~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~ 170 (376)
T 3f0h_A 101 IDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTK-EKLYEYDNQ------NFTGLLVNVDETSTAVLYD---TMMIGEFC 170 (376)
T ss_dssp EESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCH-HHHHTTTTS------CCCEEEEESEETTTTEECC---HHHHHHHH
T ss_pred EeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCH-HHHHHhhcc------CceEEEEecccCCcceecC---HHHHHHHH
Confidence 6 34444 344678999 999987765 8999999999999999999 88888899
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+++|++||+|++|+.+.. ...+... + ..+++.|+||++++++| +|+++ .++++++.+..
T Consensus 171 ~~~~~~li~D~~~~~~~~-----~~~~~~~--------~---~d~~~~s~~K~l~~~~G--~g~~~---~~~~~~~~~~~ 229 (376)
T 3f0h_A 171 KKNNMFFVCDCVSAFLAD-----PFNMNEC--------G---ADVMITGSQKVLACPPG--ISVIV---LAPRGVERVEK 229 (376)
T ss_dssp HHTTCEEEEECTTTTTTS-----CCCHHHH--------T---CSEEEEETTTTTCCCSS--CEEEE---ECHHHHHHHHT
T ss_pred HHcCCEEEEEcCccccCc-----ccccccc--------C---ccEEEecCcccccCCCc--eEEEE---ECHHHHHHhhc
Confidence 999999999999986432 1222221 1 24888999999943777 57777 48888888875
Q ss_pred hhh------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 302 IAS------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 302 ~~~------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
... ...+++...+.++.++++ ...++ ++.++++++++++++.+.|+++ |
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~ 298 (376)
T 3f0h_A 230 SKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLK----------EIKKHGGADAEVARIASQAADFRAKIKDL-P 298 (376)
T ss_dssp CCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHHTTTS-S
T ss_pred CCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 321 022333333344444432 12222 4567888899999999999987 6
Q ss_pred cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
+.+..+.....++... +.+ .+..++...+++++||.+++|... .+.+++||++. .++++++++
T Consensus 299 ~~~~~~~~~~~~~~~~--~~~----------~~~~~l~~~l~~~~gi~v~~g~~~---~~~~~lRis~~~~~t~e~i~~~ 363 (376)
T 3f0h_A 299 FELVSESPANGVTSVH--PTT----------ANAYDIFLKLKDEYGIWICPNGGE---MKDTIFRVGHIGALTHEDNTTL 363 (376)
T ss_dssp EEECCSSBBTTEEEEE--ESS----------SCHHHHHHHHHHHSSEECEECCGG---GTTTCEEEECCSSCCHHHHHHH
T ss_pred CccCccccCceEEEEe--CCC----------CCHHHHHHHHHHhCCEEEecCccc---cCCCEEEEecCCCCCHHHHHHH
Confidence 7665544333222111 111 124455555555459999998422 13458999997 689999999
Q ss_pred HHHHHHHHHH
Q 041151 440 MESFKKFNDE 449 (463)
Q Consensus 440 ~~~l~~~l~~ 449 (463)
+++|++++++
T Consensus 364 ~~~l~~~l~~ 373 (376)
T 3f0h_A 364 VNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=239.40 Aligned_cols=304 Identities=12% Similarity=0.068 Sum_probs=202.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-CCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-EGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-~gd~Vlv 160 (463)
|+.+++++.+++... ..|++..+..+++.++++.+.+.+|... +++|++|+|+++++..+++++. . +|+.|++
T Consensus 61 ~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~~~ai~~~~-~~~~~~vi~ 134 (419)
T 2eo5_A 61 HPEVIKIGIEQMQKL----AHAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAIEASIKVVK-NTGRKYIIA 134 (419)
T ss_dssp CHHHHHHHHHHHTTS----CCCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHHHHHHHHHH-TTSCCEEEE
T ss_pred CHHHHHHHHHHHhhC----ccccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHHHHHHHHHH-HhhCCcEEE
Confidence 688999999888652 1233333334556666666666666543 7899999999999999999875 4 4888888
Q ss_pred c---cC-----------c-------------ee---cC-CCc----c------------cChHHHHH-HHHHHHHhcCCc
Q 041151 161 L---FH-----------T-------------TW---KR-QQI----G------------VLIINDLQ-QSVAQARSKGIT 192 (463)
Q Consensus 161 p---~g-----------~-------------~~---~~-~~~----~------------~d~~~~l~-~~l~~~~~~~~~ 192 (463)
+ +. . .+ +. +.+ + +|+ +.|+ +.+++. ....+
T Consensus 135 ~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~-~~l~~~~i~~~-~~~~~ 212 (419)
T 2eo5_A 135 FLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVI-EFIEDYIFVNL-VPPEE 212 (419)
T ss_dssp ETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHH-HHHHHTHHHHT-CCGGG
T ss_pred ECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHH-HHHHHHHHhhc-cCCCC
Confidence 5 21 0 11 11 222 2 367 8999 888741 00014
Q ss_pred eeEEEEECCC-CCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIINPG-NPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~p~-NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+++| +++|+ ||||. +++.+++++|.++|++||++||+||+|.++.+. +. ...+... +. .. ++ .|
T Consensus 213 ~~~v-i~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~-g~-~~~~~~~--~~----~~--d~---~t 278 (419)
T 2eo5_A 213 VAGI-FFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRT-GK-LFAIENF--NT----VP--DV---IT 278 (419)
T ss_dssp EEEE-EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSGGGGG--TC----CC--SE---EE
T ss_pred EEEE-EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccC-cc-hhhHHhc--CC----CC--CE---EE
Confidence 5554 56664 67896 678889999999999999999999999986542 22 1111111 11 12 22 38
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRA 349 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (463)
|||+| + +| +|+||++. +++++ .+......+++.+.+.|.++.++|+ ... ++++++++++
T Consensus 279 ~sK~~-~-~G~~riG~~~~---~~~~~-~~~~~~~~t~~~n~~~~~aa~aal~-----------~~~---~~~~~~~~~~ 338 (419)
T 2eo5_A 279 LAKAL-G-GGIMPIGATIF---RKDLD-FKPGMHSNTFGGNALACAIGSKVID-----------IVK---DLLPHVNEIG 338 (419)
T ss_dssp ECGGG-G-TTTSCCEEEEE---EGGGC-CC------CCCCCHHHHHHHHHHHH-----------HHH---HHHHHHHHHH
T ss_pred ecccc-c-CCccceEEEEE---chHhh-cCCcccCCCCCCCHHHHHHHHHHHH-----------HHH---HHHHHHHHHH
Confidence 99999 6 49 99999994 77777 6621233467889999999988863 122 2677889999
Q ss_pred HHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 350 RMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 350 ~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+++.+.|+++ +....+.|. |+|+++. +... ...++.. |.++||.++|+. .+++||++
T Consensus 339 ~~l~~~L~~~--~~~~~~~g~-~~~i~~~-~~~~-----------~~~~~~~-l~~~Gv~v~~~~-------~~~lRis~ 395 (419)
T 2eo5_A 339 KIFAEELQGL--ADDVRGIGL-AWGLEYN-EKKV-----------RDRIIGE-SFKRGLLLLPAG-------RSAIRVIP 395 (419)
T ss_dssp HHHHHHHTTS--SSEEEEETT-EEEEECS-CHHH-----------HHHHHHH-HHHTTEECEEET-------TTEEEECC
T ss_pred HHHHHHHHHh--hhheEeeeE-EEEEEEe-cCcc-----------HHHHHHH-HHHCCCEEecCC-------CCEEEEEC
Confidence 9999999876 333445554 5554442 2210 1234444 558899999963 24899987
Q ss_pred c--CCcCcHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+ .+++++++++++|+++++++
T Consensus 396 ~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 396 PLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhc
Confidence 6 78999999999999988653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=230.75 Aligned_cols=297 Identities=12% Similarity=0.146 Sum_probs=209.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccC-CCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYS-DSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
|+.+++++.+++.+. ..+|. ...+..++.+++.+++.+.+|.+ ++++|++|+|+++++..++.++. ++ +.+++
T Consensus 16 ~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l~-~~-~~i~~ 89 (362)
T 3ffr_A 16 YPTVRQHMITALDEK---IGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNCV-EK-KSFHC 89 (362)
T ss_dssp CTTHHHHHHHHHHTT---TTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHHC-SS-EEEEE
T ss_pred CHHHHHHHHHHhcCC---ccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhcc-CC-cEEEE
Confidence 888998888877652 21121 12233456666666666666653 56799999999999999999997 77 54444
Q ss_pred c--------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L--------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p--------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
. .|+++ ...++.+|+ +.|+ +++ ++++|++++|+||||.+++ +++|.++|+
T Consensus 90 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~--~~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~ 157 (362)
T 3ffr_A 90 VNGSFSKRFYEFAGELGREAYKEEAAFGKGFYP-ADIT--VPA------DAEIICLTHNETSSGVSMP---VEDINTFRD 157 (362)
T ss_dssp ECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCG-GGCC--CCT------TCCEEEEESEETTTTEECC---HHHHTTSGG
T ss_pred cCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCH-HHHh--ccC------CccEEEEEcCCCCcceeCC---HHHHHHHHH
Confidence 3 45555 345678899 9998 443 8999999999999999999 677888999
Q ss_pred hC-CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 223 QE-NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 223 ~~-~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+| |++||+|++|+.+.. + ..+ .. ..+++.|+||++++++| +|++++ ++++++.+..
T Consensus 158 ~~p~~~li~D~a~~~~~~----~-~~~-----------~~--~d~~~~s~~K~~~~~~G--~g~~~~---~~~~~~~~~~ 214 (362)
T 3ffr_A 158 KNKDALIFVDAVSSLPYP----K-FDW-----------TK--IDSVFFSVQKCFGLPAG--LGVWIL---NDRVIEKSKA 214 (362)
T ss_dssp GSTTSEEEEECTTTTTSS----C-CCT-----------TS--CSEEEEETTSTTCCCSC--CEEEEE---EHHHHHHHHH
T ss_pred hCCCCEEEEecccccCCc----c-cCh-----------hH--CcEEEEecccccCCCCc--eEEEEE---CHHHHHHhhh
Confidence 99 999999999986432 1 111 11 23788999999933788 566763 7888887766
Q ss_pred hhh----------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Q 041151 302 IAS----------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNS 358 (463)
Q Consensus 302 ~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~ 358 (463)
... ...+++...+.++..+++ ..... .++++++++++++++.+.|++
T Consensus 215 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~ 284 (362)
T 3ffr_A 215 LLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTG----------DMLQISADGIRKQTEEKAALINTYIES 284 (362)
T ss_dssp HHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHH----------HHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 432 134556666666666542 11111 466888899999999999999
Q ss_pred CCCcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CC
Q 041151 359 CRNVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PA 432 (463)
Q Consensus 359 ~pg~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~ 432 (463)
+||+.+..+. +++++|+.+. . +..++. +.|.++||.+.+|..+. +.+++||+++ .+
T Consensus 285 ~~g~~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~-~~l~~~gi~~~~g~~~~---~~~~iRis~~~~~~ 346 (362)
T 3ffr_A 285 SKVFSFGVEDAKLRSMTTIVANTT--M------------LPGEIN-KILEPFDMAVGAGYGSK---KETQIRIANFPAHS 346 (362)
T ss_dssp CSSEEESSSCGGGBCSSEEEEEES--S------------CHHHHH-HHHGGGTEEEEECSGGG---TTTEEEEECCTTSC
T ss_pred ccCceeccCChhhcCCceEEEecC--C------------CHHHHH-HHHHHCCeEEecCcccc---CCCEEEEECCCCCC
Confidence 9898877632 3456664443 1 134544 44666699999985443 3358999998 68
Q ss_pred cCcHHHHHHHHHHHH
Q 041151 433 EEDMPAIMESFKKFN 447 (463)
Q Consensus 433 ~e~i~~~~~~l~~~l 447 (463)
++++++++++|++++
T Consensus 347 ~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 347 LEQVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999988764
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-28 Score=247.46 Aligned_cols=294 Identities=12% Similarity=0.101 Sum_probs=194.4
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL----------------- 161 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----------------- 161 (463)
....|+ ..|.+ +++++++++.+.+|. +++++++|+++++..++. ++ ++||+|+++
T Consensus 123 ~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~~l~-~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~ 194 (464)
T 1ibj_A 123 GPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPR 194 (464)
T ss_dssp CSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTSGG
T ss_pred CCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHHHHH-Hh-CCCCEEEEECCCchhHHHHHHHHHHH
Confidence 345677 45665 788888888887763 467777777899998886 66 899999997
Q ss_pred cCcee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 162 FHTTW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 162 ~g~~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
.|+++ ... ..|+ +.|++++++ ++++|++++|+||||.+++ +++|+++|+++|++||+||+|.....
T Consensus 195 ~G~~v~~v~--~~d~-~~l~~~i~~------~tk~v~l~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~- 261 (464)
T 1ibj_A 195 SGVVVKRVN--TTKL-DEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL- 261 (464)
T ss_dssp GTCEEEEEC--TTSH-HHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT-
T ss_pred cCCEEEEeC--CCCH-HHHHHHhcc------CceEEEEeCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCccccc-
Confidence 23333 111 1278 999998876 8999999999999999996 78888899999999999999975321
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHH
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGL 319 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~ 319 (463)
..++ . .+++|++.|+||++++.+|+|+||+++ .++++++.+..... ...+.+.+.|.++..
T Consensus 262 ----~~~~-----------~-~~~div~~S~sK~~~g~~Gl~~G~l~~--~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~ 323 (464)
T 1ibj_A 262 ----SRPL-----------E-LGADIVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFDCWLCLR 323 (464)
T ss_dssp ----CCGG-----------G-TTCSEEEEETTTTTTCSSCCCCEEEEE--CSHHHHHHHHHHHHHTTCBCCHHHHHHHHH
T ss_pred ----CChh-----------h-cCCEEEEECCcccccCCCCCcEEEEEE--ChHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 1111 1 124689999999995555999999996 33588888877764 456678888888877
Q ss_pred hcCCCCCCCchHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCCCcccccCCc---eeEEeeeccCChhhHHHHhhcCCC
Q 041151 320 MVNPLKPGDISYEQFVRESKGILESLRRR---ARMMTDGFNSCRNVVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKV 393 (463)
Q Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~L~~~pg~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~ 393 (463)
.++... ..++........+.+.++++ ++++++.|+++||+.+..++. +.++++.+. ..
T Consensus 324 al~~~~---~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~--~~----------- 387 (464)
T 1ibj_A 324 GIKTMA---LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG--SV----------- 387 (464)
T ss_dssp HHTTHH---HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS--CH-----------
T ss_pred chhhHH---HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC--CH-----------
Confidence 775210 11222222111121111111 122334555567777766542 234554442 11
Q ss_pred ChHHHHHHHHHhcCeEeeCCC------------CCCCC--------CCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 394 PDVFYCLRLLEATGISTVPGS------------GFGQK--------EGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 394 ~~~~~~~~ll~~~gI~v~pg~------------~f~~~--------~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+..+.+.+.|+..||.+++|. .++.+ .+.+++|||++. |++++++++|++++++
T Consensus 388 ~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--edi~~li~~L~~al~~ 461 (464)
T 1ibj_A 388 ALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--EDVDDLISDLDIAFKT 461 (464)
T ss_dssp HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--SCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHHHHHHHHHHhh
Confidence 012223334556799998886 22211 124589999998 8999999999998753
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=238.95 Aligned_cols=300 Identities=10% Similarity=0.058 Sum_probs=201.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-cCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-RGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~~gd~Vlv 160 (463)
|+.+.+++.+++.........| +.....++++.++++ ++ +++++|++|+|+++++..++.++. ..+|+.|++
T Consensus 63 ~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~----~~--~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~ 135 (395)
T 1vef_A 63 NPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAI----LP--PELNRVFPVNSGTEANEAALKFARAHTGRKKFVA 135 (395)
T ss_dssp CHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHT----SC--TTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred CHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHh----cC--CCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEE
Confidence 8899999998887631111123 222234455555444 34 467899999999999999998762 036777777
Q ss_pred c---c-----------Ccee------c--CCCc---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC-CHHHH
Q 041151 161 L---F-----------HTTW------K--RQQI---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL-SEANL 214 (463)
Q Consensus 161 p---~-----------g~~~------~--~~~~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~-s~~~l 214 (463)
+ + |.+. + .+.. ..|+ ++|++.+++ ++++|+++.++||||.++ +.+++
T Consensus 136 ~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l 208 (395)
T 1vef_A 136 AMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDV-EALKRAVDE------ETAAVILEPVQGEGGVRPATPEFL 208 (395)
T ss_dssp ETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCH-HHHHHHCCT------TEEEEEECSEETTTTSEECCHHHH
T ss_pred EcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcH-HHHHHHhcc------CEEEEEEeCccCCCCccCCCHHHH
Confidence 5 2 2110 0 0010 1588 999998875 789887766689999764 78889
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|.++|++||++||+||+|..+.+ .+. ..++... +. .. .++ ||||++ +. |+|+||+++ +++
T Consensus 209 ~~i~~l~~~~~~~li~Dea~~~~~~-~g~-~~~~~~~--~~----~~--d~~---s~sK~~-~~-g~~~G~~~~---~~~ 270 (395)
T 1vef_A 209 RAAREITQEKGALLILDEIQTGMGR-TGK-RFAFEHF--GI----VP--DIL---TLAKAL-GG-GVPLGVAVM---REE 270 (395)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTT-TSS-SSTHHHH--TC----CC--SEE---EECGGG-GT-TSSCEEEEE---EHH
T ss_pred HHHHHHHHHcCCEEEEEecccCCcc-CCc-hhHhhhc--CC----CC--CEE---EEcccc-cC-CCceEEEEe---hHH
Confidence 9999999999999999999996533 122 1122111 11 12 222 889999 64 899999995 777
Q ss_pred HHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cCCcee
Q 041151 295 TVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN--FTEGAM 371 (463)
Q Consensus 295 ~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~--~~~g~~ 371 (463)
+++.+..... .+++.+.+.|.++.++++ .... +.+.++++++++++.+.|++++ ..+. .+..++
T Consensus 271 ~~~~l~~~~~~~~~~~~~~~~~a~~~al~-----------~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~g~ 337 (395)
T 1vef_A 271 VARSMPKGGHGTTFGGNPLAMAAGVAAIR-----------YLER-TRLWERAAELGPWFMEKLRAIP-SPKIREVRGMGL 337 (395)
T ss_dssp HHHTSCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-HTTHHHHHHHHHHHHHHHHTSC-CTTEEEEEEETT
T ss_pred HHhhhccCCcCCCcCCCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHHHHHHHHHHhh-cCceEEEEEEEE
Confidence 7776655322 356678888888877763 2222 3467788889999999998873 2221 223456
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
++|+.++ . +..++...+++++||.+.|+. .+++||+++ .+++++++++++|++++
T Consensus 338 ~~~~~~~--~------------~~~~l~~~l~~~~gi~v~~~~-------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 338 MVGLELK--E------------KAAPYIARLEKEHRVLALQAG-------PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp EEEEEES--S------------CSHHHHHHHHHHHCEECEESS-------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEc--C------------hHHHHHHHHHHHCCeEEecCC-------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 7775553 1 134555555437899999852 348999886 78899999999998875
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-28 Score=241.95 Aligned_cols=304 Identities=12% Similarity=0.047 Sum_probs=189.9
Q ss_pred cHHHHHHHHHHhhhcCCC-CCccCCC----CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cC
Q 041151 82 PADAIARAKHYLSLTSGG-LGAYSDS----RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-~~~Y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~ 153 (463)
|+.+++++.+.+...... ...|... ....++++.++++++ +++++|++|+|+++++..++.+++ .+
T Consensus 33 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~------~~~~~v~~~~g~t~al~~~~~~l~~~~~~ 106 (400)
T 3vax_A 33 DQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS------AEPDELIFTSGATESNNIALLGLAPYGER 106 (400)
T ss_dssp CHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT------CCGGGEEEESCHHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC------CCCCcEEEeCCHHHHHHHHHHHHHHhhcc
Confidence 889999998877642111 0112211 123455555655554 567899999999999999999884 15
Q ss_pred CCC-EEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 154 EGD-GVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 154 ~gd-~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
+|| .|+++ .|.++ ...++.+|+ ++|++++++ ++++|++++|+||||.+++
T Consensus 107 ~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~-- 177 (400)
T 3vax_A 107 TGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISV-EGVMERLRP------DTLLVSLMHVNNETGVIQP-- 177 (400)
T ss_dssp HTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCH-HHHHTTCCT------TEEEEECCSBCTTTCBBCC--
T ss_pred CCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCH-HHHHHhcCC------CceEEEEECCCCCceeeCc--
Confidence 899 99995 36666 334677899 999999886 7999999999999999998
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE-ecCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE-MTNI 291 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~-~~~~ 291 (463)
+++|.++|+++|++||+|++|+.... ...+ ... ..+++.|+||.+ |++| +|+++ + .
T Consensus 178 -l~~i~~la~~~~~~li~D~a~~~~~~-----~~~~-----------~~~-~d~~~~s~~K~~-g~~g--~g~~~~~--~ 234 (400)
T 3vax_A 178 -VAELAQQLRATPTYLHVDAAQGYGKV-----PGDL-----------TTP-IDMISISGHKIG-APKG--VGALVTR--R 234 (400)
T ss_dssp -HHHHHHHHTTSSCEEEEECTTTTTTS-----GGGG-----------GSC-CSEEEEETGGGT-SCSS--CEEEEEC--B
T ss_pred -HHHHHHHHHhcCCEEEEEhhhhcCCC-----CcCh-----------hhc-CcEEEEeHHHhC-CCCc--eEEEEEe--c
Confidence 67888899999999999999985321 1111 211 347899999966 7666 56665 5 2
Q ss_pred ChhHH---HHHHhhh-------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041151 292 PPKTV---DEIYKIA-------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR 360 (463)
Q Consensus 292 ~~~~~---~~l~~~~-------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p 360 (463)
++++. ..+.... . ...+.+...+.++..+++ ...++.++++++++++++++.+.|+ .+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~l~~~L~-~~ 303 (400)
T 3vax_A 235 REEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAK----------IFEAEHAQWQVAAQDLRSRLLAGLA-ST 303 (400)
T ss_dssp CSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH----------HHHHSHHHHHHHHHHHHHHHHHHHT-TT
T ss_pred chhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHhhC-CC
Confidence 32111 1111111 1 134455666666655542 2233456788899999999999999 78
Q ss_pred CcccccCCce---eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-------------C---C
Q 041151 361 NVVCNFTEGA---MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-------------E---G 421 (463)
Q Consensus 361 g~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-------------~---~ 421 (463)
|+.+..+.++ .++++ .++.. +..++ .+.|. +||.+++|..|... + .
T Consensus 304 ~~~~~~~~~~~~~~~~~~--~~~~~-----------~~~~l-~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~ 368 (400)
T 3vax_A 304 SFQVNGDQDHVVPHILNL--SFEDV-----------DAEAF-LVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAA 368 (400)
T ss_dssp TCEECSCTTSBCTTEEEE--ECTTC-----------CHHHH-HHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHH
T ss_pred CEEEeCCcccCCCCEEEE--EeCCC-----------CHHHH-HHHHh-cCcEEEecccccCCCCCccHHHHHcCCCcccc
Confidence 9988776652 23342 33321 23444 45566 89999998766431 0 0
Q ss_pred CcEEEEEe-c--CCcCcHHHHHHHHHHHHHH
Q 041151 422 IFHLRTTI-L--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 422 ~~~lRis~-~--~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++||++ + .+++++++++++|++++++
T Consensus 369 ~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 369 SKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp TSEEEEEEEEC--------------------
T ss_pred CceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 36899999 6 6789999999999988754
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=239.89 Aligned_cols=312 Identities=13% Similarity=0.075 Sum_probs=206.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhc-CCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIR-GEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl 159 (463)
++.+++++.+++... ..|+...+..++++++++++.+.++. .. ++|++|+|+++++..+++++.. .+++.|+
T Consensus 61 ~p~v~~a~~~~~~~~----~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi 134 (439)
T 3dxv_A 61 HPAIVAAVSAAAANP----AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSGSDANEAAYRAIVKATGRSGVI 134 (439)
T ss_dssp CHHHHHHHHHHHHSC----SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEE
T ss_pred CHHHHHHHHHHHHhc----cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 889999999888762 34655667778889999988876543 34 7999999999999999998520 2455565
Q ss_pred Ec---c-Ccee---------------------------cCCC-ccc-----ChHHHHHHHHHHHHhcCCceeEEEEECCC
Q 041151 160 LL---F-HTTW---------------------------KRQQ-IGV-----LIINDLQQSVAQARSKGITVRAMVIINPG 202 (463)
Q Consensus 160 vp---~-g~~~---------------------------~~~~-~~~-----d~~~~l~~~l~~~~~~~~~~~~i~l~~p~ 202 (463)
+. + |... +... +.. |+ +.|+++++.. ...++++|+++.++
T Consensus 135 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~--~~~~~~~vi~~p~~ 211 (439)
T 3dxv_A 135 AFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAIL-TLLTEKLAAV--PAGSIGAAFIEPIQ 211 (439)
T ss_dssp EETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHH-HHHHHHHHTS--CTTCEEEEEECSSB
T ss_pred EECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHH-HHHHHHHHhc--CCCCEEEEEEcccc
Confidence 53 1 1111 1000 001 57 9999998510 01167888888888
Q ss_pred CCCccCCC-HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCc
Q 041151 203 NPTGQCLS-EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQ 281 (463)
Q Consensus 203 NPtG~~~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~ 281 (463)
|++|.+.+ .+.+++|.++|++||++||+||+|..+... +. ..... .+ +....+ .||||++ + +|+
T Consensus 212 ~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~-g~-~~~~~----~~----~~~~di---~s~sK~~-~-~G~ 276 (439)
T 3dxv_A 212 SDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARS-GR-LHCFE----HE----GFVPDI---LVLGKGL-G-GGL 276 (439)
T ss_dssp STTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTT-SS-SSGGG----GT----TCCCSE---EEECGGG-G-TTS
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC-ch-hhHHH----hc----CCCCCE---EEEcchh-c-CCc
Confidence 88888665 445999999999999999999999975432 21 11111 11 111122 3999999 6 699
Q ss_pred eeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 041151 282 RGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS-- 358 (463)
Q Consensus 282 R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-- 358 (463)
|+||++ +++++++.+.+... .++ .+++.|.++.++++ .... +.+.++++++++.+.+.|.+
T Consensus 277 riG~~~---~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~~ 340 (439)
T 3dxv_A 277 PLSAVI---APAEILDCASAFAMQTLH-GNPISAAAGLAVLE-----------TIDR-DDLPAMAERKGRLLRDGLSELA 340 (439)
T ss_dssp CCEEEE---EEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEE---ECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence 999999 58888887766543 456 88899988888763 1111 23445555555566555544
Q ss_pred --CCCcccccCCceeEEeeeccC------ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 359 --CRNVVCNFTEGAMYSFPQIRL------PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 359 --~pg~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
+|.+....+.|. |+|+.+.- |... +...+. ..|.++||.+.|+..+ .+++||+++
T Consensus 341 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~----------~~~~~~-~~l~~~Gv~v~~~~~~-----~~~iRi~~~ 403 (439)
T 3dxv_A 341 KRHPLIGDIRGRGL-ACGMELVCDRQSREPARA----------ETAKLI-YRAYQLGLVVYYVGMN-----GNVLEFTPP 403 (439)
T ss_dssp HHCTTEEEEEEETT-EEEEEEEEETTTTEECHH----------HHHHHH-HHHHHHTEECEEESTT-----SCEEEECCC
T ss_pred HhCCCeEEEEEEEE-EEEEEEecCccccCCCHH----------HHHHHH-HHHHHCCcEEeecCCC-----CCEEEEECC
Confidence 455555555554 45544410 1110 123444 4455679999997533 248999876
Q ss_pred --CCcCcHHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++++++++++|+++++++
T Consensus 404 ~~~t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 404 LTITETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTG
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 78899999999999998765
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=235.18 Aligned_cols=303 Identities=11% Similarity=0.058 Sum_probs=206.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~ 154 (463)
++.+++++.+++.... .++. ....++++++++.+.+..| +++|++|+|+++++..+++++. . +
T Consensus 75 ~p~v~~ai~~~~~~~~----~~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~~al~~~~-~~~~~~~~~ 144 (420)
T 2pb2_A 75 HPALVEALKSQGETLW----HTSN-VFTNEPALRLGRKLIDATF----AERVLFMNSGTEANETAFKLAR-HYACVRHSP 144 (420)
T ss_dssp CHHHHHHHHHHHTTCC----CCCT-TSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHHHHHHHHH-HHHHHHTCT
T ss_pred CHHHHHHHHHHHHhcc----cccC-ccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHHHHHHHHH-HHhhhccCC
Confidence 7889999988887631 1111 1234667777777766644 5899999999999999999886 5 6
Q ss_pred CC-EEEEc---cCcee------cC-------------CCc---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-c
Q 041151 155 GD-GVVLL---FHTTW------KR-------------QQI---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG-Q 207 (463)
Q Consensus 155 gd-~Vlvp---~g~~~------~~-------------~~~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG-~ 207 (463)
|+ .|+++ +.+.. .. +.. ..|+ +.|++.+++ ++++|+++.++|++| .
T Consensus 145 g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~-~~le~~i~~------~~~~vi~~p~~~~gG~~ 217 (420)
T 2pb2_A 145 FKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDL-HAVKAVMDD------HTCAVVVEPIQGEGGVQ 217 (420)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCH-HHHHHHCCT------TEEEEEECSEETTTTSE
T ss_pred CCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCCCH-HHHHHHhcc------CceEEEEeCCcCCCCee
Confidence 74 78875 21111 00 000 1378 999998876 799999888888888 4
Q ss_pred CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 208 CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 208 ~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
+++.+++++|.++|++||+++|+||+|..+.+. +.. ..+... ++ .. .++ ||||++ + +|+|+||++
T Consensus 218 ~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~-g~~-~~~~~~--~~----~~--dii---t~sK~l-~-~G~~iG~~~ 282 (420)
T 2pb2_A 218 AATPEFLKGLRDLCDEHQALLVFDEVQCGMGRT-GDL-FAYMHY--GV----TP--DIL---TSAKAL-G-GGFPVSAML 282 (420)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSS-SHHHHH--TC----CC--SEE---EECGGG-G-TTSCCEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccC-CcH-HHHHhc--CC----CC--CeE---Eecccc-c-CCCceEEEE
Confidence 699999999999999999999999999876542 221 111111 11 22 233 789999 6 899999999
Q ss_pred ecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCc
Q 041151 288 MTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----RNV 362 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg~ 362 (463)
+ ++++++.+.... ..+++.+.+.|.++.++|+ ...+ +++.++++++++++.+.|+++ |.+
T Consensus 283 ~---~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~-----------~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 347 (420)
T 2pb2_A 283 T---TQEIASAFHVGSHGSTYGGNPLACAVAGAAFD-----------IINT-PEVLQGIHTKRQQFVQHLQAIDEQFDIF 347 (420)
T ss_dssp E---CHHHHTTCC----CCEECCCHHHHHHHHHHHH-----------HHSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_pred E---hHHHHHhhcCCCcCcccCcCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 5 777777665432 2467788999988888764 1111 345667777788888877654 433
Q ss_pred ccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHH
Q 041151 363 VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIM 440 (463)
Q Consensus 363 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~ 440 (463)
....+.| .++++.+. ... ..+..+++ ..|.++||.+.|+. .+++||+++ .+++++++++
T Consensus 348 ~~~~~~g-~~~~v~~~--~~~--------~~~~~~l~-~~l~~~Gi~v~~~~-------~~~iRl~~~~~~t~eei~~~~ 408 (420)
T 2pb2_A 348 SDIRGMG-LLIGAELK--PKY--------KGRARDFL-YAGAEAGVMVLNAG-------ADVMRFAPSLVVEEADIHEGM 408 (420)
T ss_dssp EEEEEET-TEEEEEEC--GGG--------TTCHHHHH-HHHHHTTEECEESS-------TTEEEECCCTTCCHHHHHHHH
T ss_pred EEEEecc-eEEEEEEC--CCc--------hHHHHHHH-HHHHHCCCEEEeCC-------CCEEEEECCCCCCHHHHHHHH
Confidence 3344444 45564443 210 00234444 44556899999863 248999976 7899999999
Q ss_pred HHHHHHHHHH
Q 041151 441 ESFKKFNDEF 450 (463)
Q Consensus 441 ~~l~~~l~~~ 450 (463)
++|+++++++
T Consensus 409 ~~l~~~l~~~ 418 (420)
T 2pb2_A 409 QRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-27 Score=236.74 Aligned_cols=319 Identities=9% Similarity=0.025 Sum_probs=206.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+.+.... + ++ ..+..+++.++++.+.+.++ +++++|++|+|+++++..+++.+.. ..++.|++
T Consensus 61 ~p~v~~a~~~~~~~~~---~-~~-~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~ 133 (433)
T 1zod_A 61 HPEIVSVIGEYAGKLD---H-LF-SEMLSRPVVDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVG 133 (433)
T ss_dssp CHHHHHHHHHHHHHCC---C-CC-TTCCCHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHHhCc---c-cc-cccCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEE
Confidence 7889999988887621 1 11 12223566666666666555 3578999999999999999986531 23577887
Q ss_pred c---c-C-----------------------cee-cC-C----Ccc--------cChHHHHHHHHHHHHhcCCceeEEEEE
Q 041151 161 L---F-H-----------------------TTW-KR-Q----QIG--------VLIINDLQQSVAQARSKGITVRAMVII 199 (463)
Q Consensus 161 p---~-g-----------------------~~~-~~-~----~~~--------~d~~~~l~~~l~~~~~~~~~~~~i~l~ 199 (463)
+ + | +.. +. . .++ +|+ +.|++.+++.. ..++++|+ +
T Consensus 134 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~~--~~~~~~vi-~ 209 (433)
T 1zod_A 134 FAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAEL-DYAFDLIDRQS--SGNLAAFI-A 209 (433)
T ss_dssp ETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHH-HHHHHHHHHHC--CSCEEEEE-E
T ss_pred ECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHH-HHHHHHHHhcC--CCCeEEEE-E
Confidence 5 2 1 111 11 1 122 357 99999987520 01556654 5
Q ss_pred CC-CCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 200 NP-GNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 200 ~p-~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
+| +||||. .++.+++++|.++|++||++||+||+|.++.+. +. ...+... +. .. .+.||||+| +
T Consensus 210 ~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~-g~-~~~~~~~--~~----~~-----di~s~sK~~-~ 275 (433)
T 1zod_A 210 EPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT-GT-MFACQRD--GV----TP-----DILTLSKTL-G 275 (433)
T ss_dssp CSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSTHHHH--TC----CC-----SEEEECHHH-H
T ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcC-ch-HhHHhhc--CC----CC-----CEEEecccc-c
Confidence 66 588995 678899999999999999999999999976442 21 1122111 11 11 234899999 6
Q ss_pred CCCceeEEEEecCCChhHHHHHHhhh--h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 278 ECGQRGGYFEMTNIPPKTVDEIYKIA--S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 278 ~~G~R~G~~~~~~~~~~~~~~l~~~~--~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
. |+|+||++ +++++++.+.... . .+++.+.+.|.++.++++ .... +...++++++++.+.+
T Consensus 276 ~-G~~ig~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~-----------~~~~-~~~~~~~~~~~~~l~~ 339 (433)
T 1zod_A 276 A-GLPLAAIV---TSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLD-----------VVQR-DGLVARANVMGDRLRR 339 (433)
T ss_dssp T-TSSCEEEE---ECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHH
T ss_pred C-CCCeeEEE---EhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHH-----------HHHh-CCHHHHHHHHHHHHHH
Confidence 4 99999999 4888998887632 1 356778999988887763 1111 2345566677777777
Q ss_pred HhhcC----CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 355 GFNSC----RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 355 ~L~~~----pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
.|+++ |.+....+.| .|+|+++.-.... ......+...+.. .|.++||.+.||..|+. .+++||+++
T Consensus 340 ~l~~l~~~~~~~~~~~~~g-~~~~i~~~~~~~~----~~~~~~~~~~~~~-~l~~~Gv~v~~~~~~~~---~~~lRi~~~ 410 (433)
T 1zod_A 340 GLLDLMERFDCIGDVRGRG-LLLGVEIVKDRRT----KEPADGLGAKITR-ECMNLGLSMNIVQLPGM---GGVFRIAPP 410 (433)
T ss_dssp HHHHHHHHCTTEEEEEEET-TEEEEEEEEETTT----TEECTTHHHHHHH-HHHHTTEECCEECCTTS---CCEEEECCC
T ss_pred HHHHHHHhCCCeEEEEEEE-EEEEEEEecCccc----cCCChHHHHHHHH-HHHHCCCeEeccCCCCC---CCEEEEECC
Confidence 77653 4444444554 4556554310000 0000001334444 45578999999887762 348999876
Q ss_pred --CCcCcHHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++++++++++|+++++++
T Consensus 411 ~~~t~~~i~~~l~~l~~~l~~~ 432 (433)
T 1zod_A 411 LTVSEDEIDLGLSLLGQAIERA 432 (433)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHh
Confidence 88999999999999988654
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=234.09 Aligned_cols=324 Identities=9% Similarity=-0.050 Sum_probs=211.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------- 153 (463)
++.+++++.+++.+. ...|+...+..+++.++++++.+..+ .+.++|++|+|+++++..+++++. .
T Consensus 69 ~p~v~~A~~~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGseA~~~al~~~~-~~~~~~g~~ 142 (460)
T 3gju_A 69 RQKIADAIATQAKNL---AYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSDANETNIKLIW-YYNNVLGRP 142 (460)
T ss_dssp CHHHHHHHHHHHHHH---SCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc---cccccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHHHHHHHHH-HHHHhcCCC
Confidence 688999998888762 23455445556788888888876643 466799999999999999999886 4
Q ss_pred CCCEEEEc----cCcee-------------------------c--C----CCcccC--------hHHHHHHHHHHHHhcC
Q 041151 154 EGDGVVLL----FHTTW-------------------------K--R----QQIGVL--------IINDLQQSVAQARSKG 190 (463)
Q Consensus 154 ~gd~Vlvp----~g~~~-------------------------~--~----~~~~~d--------~~~~l~~~l~~~~~~~ 190 (463)
+++.|++. +|... + . ++++.+ + +.|++.++....
T Consensus 143 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~-~~le~~i~~~~~-- 219 (460)
T 3gju_A 143 EKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCA-DKLEEMILAEGP-- 219 (460)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHH-HHHHHHHHHHCG--
T ss_pred CCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHH-HHHHHHHHhcCC--
Confidence 45788875 22110 0 1 111222 5 888888874211
Q ss_pred CceeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 191 ITVRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 191 ~~~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
.++++|+++.++|++|. +++.+.+++|.++|++||+++|+||+|..+... +. ....... +. .. .+.
T Consensus 220 ~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~-g~-~~~~~~~--~~----~p-----di~ 286 (460)
T 3gju_A 220 ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRL-GT-MFGSDHY--GI----KP-----DLI 286 (460)
T ss_dssp GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SCHHHHH--TC----CC-----SEE
T ss_pred CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc-cc-cchHhhc--CC----CC-----Cee
Confidence 15677766666777776 778888999999999999999999999976442 21 1112111 11 11 234
Q ss_pred cCCcccCCCCC-ceeEEEEecCCChhHHHHHHhh-------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 041151 270 TVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI-------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKG 340 (463)
Q Consensus 270 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (463)
+|||++ + .| +|+||++ +++++++.+... . ..+++.+++.|.++.++|+. ... ....+.
T Consensus 287 t~sK~l-~-gG~~~lg~v~---~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-------~~~-~~~~~~ 353 (460)
T 3gju_A 287 TIAKGL-T-SAYAPLSGVI---VADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLEL-------IDE-MDLVTN 353 (460)
T ss_dssp EECGGG-T-TTSSCCEEEE---EEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHH-------HHH-TTHHHH
T ss_pred eeehhh-c-CCCCCeEEEE---ECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHH-------HHh-ccHHHH
Confidence 789999 5 35 8999999 589999998632 2 24678899999999888741 100 111233
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCC---ChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 341 ILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV---PDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 341 ~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
.++..+..++.|.+.+.++|++....+.|.++ ++.+.-... ....+. .....+...|.++||.+.|+.
T Consensus 354 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--- 424 (460)
T 3gju_A 354 AGETGAYFRAELAKAVGGHKNVGEVRGDGMLA-AVEFVADKD-----DRVFFDASQKIGPQVATALAASGVIGRAMP--- 424 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTEEEEEEETTEE-EEEECSBTT-----TTBCCCGGGCHHHHHHHHHHHTTEECEECS---
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEE-EEEEccCcc-----ccccccchHHHHHHHHHHHHHCCeEEecCC---
Confidence 44444555556666666666666666666554 433321100 000000 012234455667899999965
Q ss_pred CCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 418 ~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
..+++||++. .+++++++++++|+++++++.+
T Consensus 425 ---~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 458 (460)
T 3gju_A 425 ---QGDILGFAPPLCLTREQADIVVSKTADAVKSVFA 458 (460)
T ss_dssp ---SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred ---CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1248999965 7889999999999999987653
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=233.68 Aligned_cols=298 Identities=12% Similarity=0.101 Sum_probs=201.4
Q ss_pred cHHHHHHHHHHhhhcC-CCCCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCc-HHHHHHHHHHHhcCC--
Q 041151 82 PADAIARAKHYLSLTS-GGLGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGA-SKGVMQTLNCVIRGE-- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~-~~~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~-~~al~~~~~~l~~~~-- 154 (463)
|+.+++++.+.+.... .....|.. ..+..++.+++.+++.+.+|.+ ++++|++|+|+ ++++..++.+++ .+
T Consensus 15 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~al~~~~~~l~-~~~~ 92 (360)
T 1w23_A 15 PKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQFTMLPMNLL-TKGT 92 (360)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHC-CTTC
T ss_pred CHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHHHHHHHHHhc-CCCC
Confidence 8899999988775420 01122222 2233344555555555555653 46799999999 999999999997 55
Q ss_pred -CCEEEEc------------cCcee---cCC--CcccChHHHHHH-HHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 155 -GDGVVLL------------FHTTW---KRQ--QIGVLIINDLQQ-SVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 155 -gd~Vlvp------------~g~~~---~~~--~~~~d~~~~l~~-~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
||.|+++ .| ++ +.+ .+.+|+ ++|++ ++++ ++|+|++++|+||||.+++ +
T Consensus 93 ~g~~vi~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~d~-~~l~~~~i~~------~~k~v~~~~~~nptG~~~~--~-- 160 (360)
T 1w23_A 93 IGNYVLTGSWSEKALKEAKLLG-ETHIAASTKANSYQSI-PDFSEFQLNE------NDAYLHITSNNTIYGTQYQ--N-- 160 (360)
T ss_dssp EEEEEECSHHHHHHHHHHHTTS-EEEEEEECGGGTSCSC-CCGGGCCCCT------TEEEEEEESEETTTTEECS--S--
T ss_pred cccEEEecchhHHHHHHHHHhC-CeEEeecccccCcCCc-cchHhhccCC------CCCEEEEeCCCCCcceecc--c--
Confidence 5667776 56 66 221 233788 88888 7755 7999999999999999987 2
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 295 (463)
+++++|++||+|++|+.+.. ..++. .. .++++|+||++ |++| +||+++ ++++
T Consensus 161 ----i~~~~~~~li~D~a~~~~~~-----~~~~~-----------~~--di~~~s~sK~~-~~~G--~G~~~~---~~~~ 212 (360)
T 1w23_A 161 ----FPEINHAPLIADMSSDILSR-----PLKVN-----------QF--GMIYAGAQKNL-GPSG--VTVVIV---KKDL 212 (360)
T ss_dssp ----CCCCCSSCEEEECTTTTTSS-----CCCGG-----------GC--SEEEEETTTTT-SCTT--CEEEEE---EHHH
T ss_pred ----ccccCCceEEEechhhcCCC-----CcCcc-----------cC--CEEEEEccccc-CCCC--cEEEEE---cHHH
Confidence 33489999999999986432 11221 11 27899999998 7777 899995 7777
Q ss_pred HHHHHhhhh------------h-cccCChHHHHHHHHhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCC
Q 041151 296 VDEIYKIAS------------I-ALSPNVPAQIFMGLMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCR 360 (463)
Q Consensus 296 ~~~l~~~~~------------~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~p 360 (463)
++.+..... . ..+++...+.++..+++ .... ..++++++++++++++.+.|++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~ 282 (360)
T 1w23_A 213 LNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLD----------WIKDLGGAEAIAKQNEEKAKIIYDTIDESN 282 (360)
T ss_dssp HCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 665544321 1 12345555556655542 1112 356688889999999999999886
Q ss_pred Cc-ccc-cC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcC
Q 041151 361 NV-VCN-FT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEE 434 (463)
Q Consensus 361 g~-~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e 434 (463)
++ ... .+ .+++++|+.+ +... +..+++ +.|.++||.+.+|..+ .+++||+++ .+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~--~~~~----------~~~~~~-~~l~~~gi~~~~~~~~-----~~~iRis~~~~~~~~ 344 (360)
T 1w23_A 283 GFYVGHAEKGSRSLMNVTFNL--RNEE----------LNQQFL-AKAKEQGFVGLNGHRS-----VGGCRASIYNAVPID 344 (360)
T ss_dssp TSSEESSCGGGBCSSEEEEEC--SSHH----------HHHHHH-HHHHHTTEESCBCCTT-----TCSEEEECCTTSCHH
T ss_pred CcccccCCchhccCcEEEEEc--CCCc----------cHHHHH-HHHHHCCeeeecCCCC-----CCeEEEEecCCCCHH
Confidence 55 433 23 3566788554 3321 123444 4467789999998754 247999999 6889
Q ss_pred cHHHHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKFNDE 449 (463)
Q Consensus 435 ~i~~~~~~l~~~l~~ 449 (463)
++++++++|++++++
T Consensus 345 ~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 345 ACIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999887653
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=235.86 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=218.0
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVA 117 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia 117 (463)
++++||+.|.|.. ++.+++++.+.+.. ..|.+..+..++|++++
T Consensus 30 ~~~id~~~~~~~~-------------------------------~~~v~~a~~~~~~~-----~~y~~~~~~~~l~~~la 73 (399)
T 2oga_A 30 VPFLDLKAAYEEL-------------------------------RAETDAAIARVLDS-----GRYLLGPELEGFEAEFA 73 (399)
T ss_dssp BCSCCHHHHHHHT-------------------------------HHHHHHHHHHHHHH-----TCCSSSHHHHHHHHHHH
T ss_pred CcccccCcCCCCC-------------------------------CHHHHHHHHHHHhc-----CCCCCchhHHHHHHHHH
Confidence 4688999888775 67888888887765 25666677889999999
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEEc-------------cCcee---c--CCCcccChHHH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVLL-------------FHTTW---K--RQQIGVLIIND 178 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlvp-------------~g~~~---~--~~~~~~d~~~~ 178 (463)
++++ . +++++++|+++++..++.++ + ++||+|+++ .|.++ + .+.+.+|+ +.
T Consensus 74 ~~~~------~--~~~v~~~~Gt~a~~~~l~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~ 143 (399)
T 2oga_A 74 AYCE------T--DHAVGVNSGMDALQLALRGLGI-GPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDP-LL 143 (399)
T ss_dssp HHTT------S--SEEEEESCHHHHHHHHHHHTTC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCH-HH
T ss_pred HHHC------C--CeEEEecCHHHHHHHHHHHhCC-CCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCH-HH
Confidence 9975 2 35677777799999999998 7 899999997 56665 2 22578999 99
Q ss_pred HHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCC
Q 041151 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLP 258 (463)
Q Consensus 179 l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 258 (463)
|++.+++ ++++|+ |+||||.+.+ +++|.++|+++|++||+||+|+.+...+.. .+. .+
T Consensus 144 l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~---~~~----~~--- 201 (399)
T 2oga_A 144 VEKAITP------RTRALL---PVHLYGHPAD---MDALRELADRHGLHIVEDAAQAHGARYRGR---RIG----AG--- 201 (399)
T ss_dssp HHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETTE---ETT----CT---
T ss_pred HHHhcCC------CCeEEE---EeCCcCCccC---HHHHHHHHHHcCCEEEEECcccccCccCCe---ecc----cc---
Confidence 9999876 788877 6789999977 778888899999999999999865321111 110 01
Q ss_pred CCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHHHhhhhhc-------------ccCChHHHHHHHHhcCC
Q 041151 259 FSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIA-------------LSPNVPAQIFMGLMVNP 323 (463)
Q Consensus 259 ~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~-------------~~~~~~~q~~~~~~l~~ 323 (463)
. .+++.|+ ||.+ |.+| |+||++. .++++++.+....... +..+.+.+.++.+.++
T Consensus 202 -~----di~~~S~~~sK~~-~~~G-~~g~~~~--~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~- 271 (399)
T 2oga_A 202 -S----SVAAFSFYPGKNL-GCFG-DGGAVVT--GDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA- 271 (399)
T ss_dssp -T----CEEEEECCTTSSS-CCSS-CCEEEEE--SCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH-
T ss_pred -c----CEEEEeCCCCccC-CcCC-ceEEEEe--CCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHH-
Confidence 1 3788898 7999 8779 9999985 3588888887654311 2334555555544432
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHH
Q 041151 324 LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (463)
..+...++.+++.+++.+.|+++||+.+. .++++.++|+.+.++. .+..+ +...
T Consensus 272 -------------~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-l~~~ 326 (399)
T 2oga_A 272 -------------HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT-----------ERRDE-LRSH 326 (399)
T ss_dssp -------------THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC-----------SSHHH-HHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC-----------CCHHH-HHHH
Confidence 12234455666778899999988888764 3556666653333211 12334 4455
Q ss_pred HHhcCeEeeCCCCCC-----------CC----C-----CCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 403 LEATGISTVPGSGFG-----------QK----E-----GIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 403 l~~~gI~v~pg~~f~-----------~~----~-----~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
|.++||.+.++.... .. + ..+++||++. .+++|+++++++|+++++++
T Consensus 327 L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 327 LDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp HHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 677899998753210 00 0 0257999998 78999999999999887643
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-26 Score=233.19 Aligned_cols=347 Identities=11% Similarity=0.040 Sum_probs=233.0
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
++++++....++.+..+.....+ .++.|+|..|.+.. |+.+++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~L~a~e~~~-------------------------------~~~V~eA~ 64 (483)
T 1rv3_A 20 MLAQPLKDSDAEVYDIIKKESNR----QRVGLELIASENFA-------------------------------SRAVLEAL 64 (483)
T ss_dssp HTTSCHHHHCHHHHHHHHHHHHH----HHSSEECCTTCCCC-------------------------------CHHHHHHH
T ss_pred HHhhhhhhcCHHHHHHHHHHHHH----hhcCeEEEcCCCCC-------------------------------CHHHHHHH
Confidence 45556666666655444333221 24689998775442 88999999
Q ss_pred HHHhhhcCC----CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC--CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--
Q 041151 90 KHYLSLTSG----GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP--ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 90 ~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-- 161 (463)
.+.+.+... ....|+...+..++++.+.+++.+.+|.+.+. .+|++++|+ +++..++.+++ +|||+|+++
T Consensus 65 ~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all-~pGD~Vl~~~~ 142 (483)
T 1rv3_A 65 GSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALV-EPHGRIMGLDL 142 (483)
T ss_dssp TSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHT-CTTCEEEEECG
T ss_pred HHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhc-CCCCEEEEecC
Confidence 887765210 01123333345678888888888888865322 358889988 88888899998 999999997
Q ss_pred -c-------------Cce-------e-c---C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 162 -F-------------HTT-------W-K---R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 162 -~-------------g~~-------~-~---~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
+ ++. + + + ..+.+|+ +.|++.+++. ++|+|++ +++||+ .+++ ++
T Consensus 143 ~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~-d~le~~i~~~-----~tklIi~-~~sn~~-~~~d---l~ 211 (483)
T 1rv3_A 143 PDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDY-DRLEENARLF-----HPKLIIA-GTSCYS-RNLD---YG 211 (483)
T ss_dssp GGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCH-HHHHHHHHHH-----CCSEEEE-CCSSCC-SCCC---HH
T ss_pred ccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCH-HHHHHHHhhc-----CCcEEEE-eCCcCC-CcCC---HH
Confidence 1 122 1 1 2 4578999 9999999843 8999999 999998 7777 77
Q ss_pred HHHHHhhhCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh-
Q 041151 216 EILRFCYQENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP- 293 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~- 293 (463)
+|.++|+++|++||+|++|.. +.+ .+....++. . ..|++.|+||+| +|+|+||+++ ++
T Consensus 212 ~i~~ia~~~g~~livD~ah~~g~~~-~~~~~~p~~----~---------~div~~s~~K~l---~GprgG~i~~---~~~ 271 (483)
T 1rv3_A 212 RLRKIADENGAYLMADMAHISGLVV-AGVVPSPFE----H---------CHVVTTTTHKTL---RGCRAGMIFY---RRG 271 (483)
T ss_dssp HHHHHHHHTTCEEEEECTTTHHHHH-HTSSCCGGG----T---------CSEEEEESSGGG---CCCSCEEEEE---ECS
T ss_pred HHHHHHHHcCCEEEEEccchhcccc-cCCCCCCCC----C---------CcEEEecCcccC---CCCCceEEEE---cch
Confidence 888889999999999999863 222 121111111 1 137889999988 4889999996 33
Q ss_pred --------------hHHHHHHhhh-h-hcccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 041151 294 --------------KTVDEIYKIA-S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 294 --------------~~~~~l~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L 356 (463)
++.+.+.... . ...+++.....++..+++ ... .+.+..++++.++++++.+.|
T Consensus 272 ~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~----------~~~~~~~~~~~~~~~~~~~~l~~~L 341 (483)
T 1rv3_A 272 VRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALK----------QAMTPEFKEYQRQVVANCRALSAAL 341 (483)
T ss_dssp BCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHH----------HHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHH----------HHhChhHHHHHHHHHHHHHHHHHHH
Confidence 2344443322 2 122333333444444442 111 234567888999999999999
Q ss_pred hcCCCcccccCC-ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee----CCCCCCCCCCCcEEEEEec-
Q 041151 357 NSCRNVVCNFTE-GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV----PGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 357 ~~~pg~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~lRis~~- 430 (463)
.+. |+.+..+. +++++|+++... + . +...+..+|.+.||.+. ||..+.. +.+++||+++
T Consensus 342 ~~~-g~~~~~~~~~~~~~~v~~~~~-g---------~--~~~~~~~~L~~~gI~v~~~~~pg~~~~~--~~~~iRis~~~ 406 (483)
T 1rv3_A 342 VEL-GYKIVTGGSDNHLILVDLRSK-G---------T--DGGRAEKVLEACSIACNKNTCPGDKSAL--RPSGLRLGTPA 406 (483)
T ss_dssp HHT-TCEEGGGSCSSSEEEEEGGGG-T---------C--CHHHHHHHHHHTTEECEEECCSSCSCTT--SCCEEEEECHH
T ss_pred Hhc-CCEeccCCCCCceEEEeccCC-C---------C--CHHHHHHHHHhCCcEEecCCCCCCCcCC--CCceEEeecCC
Confidence 988 88887653 457788776521 1 1 23335677889999999 8874322 3358999999
Q ss_pred -CC----cCcHHHHHHHHHHHHHH
Q 041151 431 -PA----EEDMPAIMESFKKFNDE 449 (463)
Q Consensus 431 -~~----~e~i~~~~~~l~~~l~~ 449 (463)
++ ++|+++++++|+++++.
T Consensus 407 ~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 407 LTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHh
Confidence 45 89999999999999876
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=231.90 Aligned_cols=302 Identities=11% Similarity=0.092 Sum_probs=207.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++.+++++.+.+.. ....|.+..+..++|++++++++ . .++|++|+| ++++..++.++ + ++||+|++
T Consensus 16 ~~~~~~a~~~~l~~---~~~~~~~~~~~~~l~~~la~~~~------~-~~~i~~~sG-t~al~~~l~~l~~-~~gd~Vi~ 83 (388)
T 1b9h_A 16 DDAERNGLVRALEQ---GQWWRMGGDEVNSFEREFAAHHG------A-AHALAVTNG-THALELALQVMGV-GPGTEVIV 83 (388)
T ss_dssp CHHHHHHHHHHHHT---SCCBTTTCSHHHHHHHHHHHHTT------C-SEEEEESCH-HHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHHc---CCeeecCCHHHHHHHHHHHHHhC------C-CeEEEeCCH-HHHHHHHHHHcCC-CCcCEEEE
Confidence 58899999988876 22356666788999999999985 2 267888877 89999999999 7 89999999
Q ss_pred c-------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ + .+.+.+|+ +.|++.+++ ++++|+ |+||||.+.+ +++|.++|+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~i~~------~~~~v~---~~n~tG~~~~---l~~i~~la~ 150 (388)
T 1b9h_A 84 PAFTFISSSQAAQRLGAVTVPVDVDAATYNLDP-EAVAAAVTP------RTKVIM---PVHMAGLMAD---MDALAKISA 150 (388)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCH-HHHHHHCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEEecCCCcCCCCH-HHHHHhcCc------CceEEE---EeCCccCcCC---HHHHHHHHH
Confidence 7 56665 2 23478999 999999876 788877 9999999976 677888888
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh-H--HHHH
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK-T--VDEI 299 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~-~--~~~l 299 (463)
++|++||+|++|+.+....+. .+. .+ . +|++.||||.. +++|.|+||++. +++ + ++.+
T Consensus 151 ~~~~~li~D~a~~~g~~~~~~---~~~----~~----~----~i~~~S~s~~K-~l~g~~~G~~~~---~~~~~~~~~~~ 211 (388)
T 1b9h_A 151 DTGVPLLQDAAHAHGARWQGK---RVG----EL----D----SIATFSFQNGK-LMTAGEGGAVVF---PDGETEKYETA 211 (388)
T ss_dssp HHTCCBCEECTTCTTCEETTE---EGG----GS----S----SCEEEECCTTS-SSCSSSCEEEEE---CTTCHHHHHHH
T ss_pred HcCCEEEEecchhcCCccCCe---ecc----cc----c----ceEEEEccCCC-cccCCCeEEEEE---CCHHHHHHHHH
Confidence 999999999999863221111 121 11 1 47889999766 567789999995 544 5 5666
Q ss_pred Hhhhhhc------------ccCC-hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Q 041151 300 YKIASIA------------LSPN-VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF 366 (463)
Q Consensus 300 ~~~~~~~------------~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~ 366 (463)
....... .+.+ .+.+..++.++. .++++++.+++++++++++.+.|+++||+.+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~-----------~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 280 (388)
T 1b9h_A 212 FLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRA-----------QLARLDEQIAVRDERWTLLSRLLGAIDGVVPQG 280 (388)
T ss_dssp HHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHH-----------HHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECC
T ss_pred HHHHhCCCCccCccceeecccccCCcCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence 5433210 0111 122222222211 123344567778889999999999988887765
Q ss_pred ------CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC----------CCC----------
Q 041151 367 ------TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG----------QKE---------- 420 (463)
Q Consensus 367 ------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~----------~~~---------- 420 (463)
+.+++++|+.++-.... +..++ ...|.++||.++++.... .+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l-~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (388)
T 1b9h_A 281 GDVRADRNSHYMAMFRIPGLTEE----------RRNAL-VDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRC 349 (388)
T ss_dssp CCTTCCBCCCSEEEEECTTCCHH----------HHHHH-HHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTC
T ss_pred CCcCCCccceEEEEEEeCCcCcc----------cHHHH-HHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCC
Confidence 35578888655411000 12344 445667899998865321 000
Q ss_pred ------CCcEEEEEec--C-CcCcHHHHHHHHHHHHHH
Q 041151 421 ------GIFHLRTTIL--P-AEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 421 ------~~~~lRis~~--~-~~e~i~~~~~~l~~~l~~ 449 (463)
..+.+||++. . +++|++.+++.|++++++
T Consensus 350 ~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 350 PNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp HHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0236999998 6 889999999999988754
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=234.77 Aligned_cols=304 Identities=11% Similarity=0.096 Sum_probs=203.0
Q ss_pred cHHHHHHHHHHhhhcCCC-CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cC----C
Q 041151 82 PADAIARAKHYLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RG----E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~----~ 154 (463)
++.+++++.+++...... ...|+.. ...++++.+++++ + +++++|++|+|+++++..+++++. .+ |
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~la~~~----~--~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~ 133 (429)
T 1s0a_A 61 HPQLNAAMKSQIDAMSHVMFGGITHA-PAIELCRKLVAMT----P--QPLECVFLADSGSVAVEVAMKMALQYWQAKGEA 133 (429)
T ss_dssp CHHHHHHHHHHHHHCSCCCCSSEECH-HHHHHHHHHHHHS----C--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcccccccccCCH-HHHHHHHHHHHhC----C--CCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCC
Confidence 789999999888763111 1233321 1234555555554 3 478899999999999999998653 12 6
Q ss_pred CCEEEEc----cC-------------------------cee-cC------CCc-ccChHHHHHHHHHHHHhcCCceeEEE
Q 041151 155 GDGVVLL----FH-------------------------TTW-KR------QQI-GVLIINDLQQSVAQARSKGITVRAMV 197 (463)
Q Consensus 155 gd~Vlvp----~g-------------------------~~~-~~------~~~-~~d~~~~l~~~l~~~~~~~~~~~~i~ 197 (463)
|+.|+++ ++ ... +. ..+ .+|+ +.|++.+++. ..++++|
T Consensus 134 ~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~~---~~~~~~v- 208 (429)
T 1s0a_A 134 RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM-VGFARLMAAH---RHEIAAV- 208 (429)
T ss_dssp CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG-HHHHHHHHHH---TTTEEEE-
T ss_pred CCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHH-HHHHHHHHhC---CCCEEEE-
Confidence 8988886 11 111 11 123 4788 9999998742 1145555
Q ss_pred EECC--CCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcc
Q 041151 198 IINP--GNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKG 274 (463)
Q Consensus 198 l~~p--~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 274 (463)
+++| |||||. ..+.+++++|.++|++||+++|+||+|.++... +. ...+... +. .. . +.||||+
T Consensus 209 i~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~-g~-~~~~~~~--~~----~~--d---~~t~sK~ 275 (429)
T 1s0a_A 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRT-GK-LFACEHA--EI----AP--D---ILCLGKA 275 (429)
T ss_dssp EECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSGGGGG--TC----CC--S---EEEECGG
T ss_pred EEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCccc-ch-HHHhhhc--CC----CC--C---EEEeccc
Confidence 5556 699995 667888999999999999999999999876441 21 1111111 11 11 2 2379999
Q ss_pred cCCCCC-ceeEEEEecCCChhHHHHHHhh------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Q 041151 275 YWGECG-QRGGYFEMTNIPPKTVDEIYKI------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRR 347 (463)
Q Consensus 275 ~~g~~G-~R~G~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (463)
+ + +| +|+||++ +++++++.+... ...+++.+.+.|.++.++++ ...+ +...+++++
T Consensus 276 l-~-~G~~~iG~~~---~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~-----------~~~~-~~~~~~~~~ 338 (429)
T 1s0a_A 276 L-T-GGTMTLSATL---TTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA-----------ILES-GDWQQQVAD 338 (429)
T ss_dssp G-G-TSSSCCEEEE---ECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH-----------HHHT-CHHHHHHHH
T ss_pred c-c-CCCccceEEE---eCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHH-----------HHHh-CCHHHHHHH
Confidence 9 5 58 9999999 488888888763 22356778999988888763 1111 235566777
Q ss_pred HHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcE
Q 041151 348 RARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFH 424 (463)
Q Consensus 348 ~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~ 424 (463)
+++++.+.|+++ |++....+.| .++|+++.-+. +..++... |.++||.+.|+ + ++
T Consensus 339 ~~~~l~~~L~~l~~~~~~~~~~~~g-~~~~~~~~~~~------------~~~~l~~~-l~~~Gi~v~~~---~-----~~ 396 (429)
T 1s0a_A 339 IEVQLREQLAPARDAEMVADVRVLG-AIGVVETTHPV------------NMAALQKF-FVEQGVWIRPF---G-----KL 396 (429)
T ss_dssp HHHHHHHHHGGGGGCTTEEEEEEET-TEEEEEESSCB------------CHHHHHHH-HHHTTEECCCB---T-----TE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEee-EEEEEEECCcc------------cHHHHHHH-HHHCCCEEecc---C-----CE
Confidence 888888888774 5555445555 46775553211 23444444 55789999883 1 37
Q ss_pred EEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 425 LRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 425 lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
+||+++ .+++++++++++|++++++
T Consensus 397 iRis~~~~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 397 IYLMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 999965 8899999999999988654
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-26 Score=232.86 Aligned_cols=321 Identities=13% Similarity=0.105 Sum_probs=207.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------- 153 (463)
++.+++++.+++... ...|+...+..+++.++++++.+.++ .+.++|++|+|+++++..+++++. +
T Consensus 68 ~p~v~~A~~~~~~~~---~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA~~~al~~~~-~~~~~~g~~ 141 (459)
T 4a6r_A 68 RKDFAEAARRQMEEL---PFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSESVDTMIRMVR-RYWDVQGKP 141 (459)
T ss_dssp CHHHHHHHHHHHHHC---SCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc---cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHH-HHHHhcCCC
Confidence 789999999988762 22454445556788888888877654 456799999999999999999986 5
Q ss_pred CCCEEEEc----cCcee-------------------------c--C----CCcccC--------hHHHHHHHHHHHHhcC
Q 041151 154 EGDGVVLL----FHTTW-------------------------K--R----QQIGVL--------IINDLQQSVAQARSKG 190 (463)
Q Consensus 154 ~gd~Vlvp----~g~~~-------------------------~--~----~~~~~d--------~~~~l~~~l~~~~~~~ 190 (463)
+++.|++. +|... + . ..+ .| + +.|++.+.....
T Consensus 142 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~-~~le~~i~~~~~-- 217 (459)
T 4a6r_A 142 EKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAA-RWLEEKILEIGA-- 217 (459)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHH-HHHHHHHHHHCG--
T ss_pred CCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHH-HHHHHHHHHcCC--
Confidence 46888875 22111 0 0 111 23 6 888888874211
Q ss_pred CceeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 191 ITVRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 191 ~~~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
.++++|+++.++|++|. .++.+.+++|.++|++||+++|+||+|..+... +. ....... +. .. . +.
T Consensus 218 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~-G~-~~~~~~~--~~----~p--d---i~ 284 (459)
T 4a6r_A 218 DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRT-GE-WFGHQHF--GF----QP--D---LF 284 (459)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SSHHHHH--TC----CC--S---EE
T ss_pred CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc-cc-cchHhhc--CC----CC--C---ee
Confidence 04555544444455554 558999999999999999999999999986542 22 1112111 11 11 1 34
Q ss_pred cCCcccCCCCCceeEEEEecCCChhHHHHHH---hhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 041151 270 TVSKGYWGECGQRGGYFEMTNIPPKTVDEIY---KIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL 345 (463)
Q Consensus 270 S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~---~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (463)
+|||++ +.+|+|+||++ +++++++.+. ... ..+++.++++|.++.++|+ .... +.+.+++
T Consensus 285 t~sK~l-~gg~~~lg~v~---~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~ 348 (459)
T 4a6r_A 285 TAAKGL-SSGYLPIGAVF---VGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVA-----------ALRD-EGIVQRV 348 (459)
T ss_dssp EECGGG-GTTSSCCEEEE---ECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHH-----------HHHH-TCHHHHH
T ss_pred ehhhhh-cCCCCCcccee---eCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHH-----------HHhc-chHHHHH
Confidence 789999 54559999999 5999999987 333 2578889999999988874 1111 1233333
Q ss_pred H-HH----HHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCCCC
Q 041151 346 R-RR----ARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 346 ~-~~----~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
+ ++ ++.|.+.|.++|++....+.|.|+.+ .+.-... +...+.+ ....+...|.++||.++|+.
T Consensus 349 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--- 419 (459)
T 4a6r_A 349 KDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAF-TLVKNKA-----KRELFPDFGEIGTLCRDIFFRNNLIMRACG--- 419 (459)
T ss_dssp HHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEE-EECSBTT-----TTBCCSSTTHHHHHHHHHHHHTTEECEEET---
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEE-EEecCcc-----ccccccchHHHHHHHHHHHHHCCeEEecCC---
Confidence 3 33 34444445555666666666665443 3321100 0000000 12233455667799999952
Q ss_pred CCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhc
Q 041151 418 QKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYE 455 (463)
Q Consensus 418 ~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~ 455 (463)
+++||+++ .+++++++++++|+++++++.++.+
T Consensus 420 -----~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~~~~ 454 (459)
T 4a6r_A 420 -----DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQTLK 454 (459)
T ss_dssp -----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999965 7999999999999999998876544
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=234.72 Aligned_cols=318 Identities=10% Similarity=0.040 Sum_probs=205.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc----C---C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR----G---E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~----~---~ 154 (463)
|+.+++++.+++... .+....+..+++.++++++.+.++. ..+ |++|+|+++++..+++.+.. . +
T Consensus 67 ~p~v~~A~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~ 138 (452)
T 3n5m_A 67 RKELAEAAYKQLQTL-----SYFPMSQSHEPAIKLAEKLNEWLGG--EYV-IFFSNSGSEANETAFKIARQYYAQKGEPH 138 (452)
T ss_dssp CHHHHHHHHHHHTTC-----CCCCTTSEEHHHHHHHHHHHHHHTS--CEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred CHHHHHHHHHHHHhc-----CCcccccCCHHHHHHHHHHHHhCCC--Cce-EEEeCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 789999999888762 1122334557777777777666553 334 99999999999999998751 2 6
Q ss_pred CCEEEEc----cCcee-------------------------cC-C--Cccc-C---------hHHHHHHHHHHHHhcCCc
Q 041151 155 GDGVVLL----FHTTW-------------------------KR-Q--QIGV-L---------IINDLQQSVAQARSKGIT 192 (463)
Q Consensus 155 gd~Vlvp----~g~~~-------------------------~~-~--~~~~-d---------~~~~l~~~l~~~~~~~~~ 192 (463)
++.|++. +|... +. . .... | + +.|++.++.... .+
T Consensus 139 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~le~~l~~~~~--~~ 215 (452)
T 3n5m_A 139 RYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECV-KEVDRVMTWELS--ET 215 (452)
T ss_dssp CCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHH-HHHHHHHHHHCG--GG
T ss_pred CCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHH-HHHHHHHHhcCC--CC
Confidence 7888886 22111 00 0 0000 1 6 999999872110 16
Q ss_pred eeEEEEECC-CCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIINP-GNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~p-~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+++|+++.+ +| ||.++ +.+.+++|.++|++||+++|+||+|..+... +.. .... .+ + ....+.|
T Consensus 216 ~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~-g~~-~~~~----~~----~---~~~di~t 281 (452)
T 3n5m_A 216 IAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRT-GKA-FGFM----NY----D---VKPDIIT 281 (452)
T ss_dssp EEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSS-SGGG----GT----T---CCCSEEE
T ss_pred EEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcc-ccc-chhh----hc----C---CCCCEEe
Confidence 777777777 89 99766 8888999999999999999999999986542 221 1111 11 1 1122347
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHh---h----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYK---I----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~---~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (463)
|||++ +. | +|+||++ +++++++.+.+ . ...+++.+++.+.++.++|+ ..+. +.+.
T Consensus 282 ~sK~l-~~-G~~~ig~~~---~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~ 344 (452)
T 3n5m_A 282 MAKGI-TS-AYLPLSATA---VKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLE-----------IIEN-ENLI 344 (452)
T ss_dssp ECGGG-GT-TSSCCEEEE---EEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHH
T ss_pred ecccc-cC-CCcceEEEE---ECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHH-----------HHHh-ccHH
Confidence 99999 65 9 9999999 58889888843 1 22467889999999888874 1111 2334
Q ss_pred HHHHHHHHHHHHHhh----cCCCcccccCCceeEEeeecc-CChhhHHHHhhcCCC-ChHHHHHHHHHhcCeEeeCCCCC
Q 041151 343 ESLRRRARMMTDGFN----SCRNVVCNFTEGAMYSFPQIR-LPPKAIEAAKRAGKV-PDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 343 ~~~~~~~~~l~~~L~----~~pg~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
++++++.+.+.+.|. ++|++....+.|.++ ++.+. ..... .... .....+...|.++||.+.|+..|
T Consensus 345 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~-~i~~~~~~~~~------~~~~~~~~~~~~~~l~~~Gv~~~~~~~~ 417 (452)
T 3n5m_A 345 ERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLV-GIELVNDKETK------EPIDNDKIASVVNACKEKGLIIGRNGMT 417 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCE-EEEEEEETTTT------EECCHHHHHHHHHHHHHTTEECEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEE-EEEEecCCccc------CCCCHHHHHHHHHHHHHCCcEEeecCcc
Confidence 445555555555554 445555556666554 43331 00000 0000 01122345566789999999877
Q ss_pred CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 417 ~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
.. ...+++||+++ .+++++++++++|++++++
T Consensus 418 ~~-~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 418 TA-GYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp ST-TCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 53 34568999866 7899999999999988753
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=233.16 Aligned_cols=301 Identities=13% Similarity=0.130 Sum_probs=200.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc------CCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR------GEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~------~~g 155 (463)
++.+++++.+.+... .+.| ..+..++++++++++.+.+| +++|++|+|+++++..++..+.. .++
T Consensus 54 ~p~v~~a~~~~~~~~---~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~ 124 (395)
T 3nx3_A 54 HAKFNAKIKAQVDKL---LHTS--NLYYNENIAAAAKNLAKASA----LERVFFTNSGTESIEGAMKTARKYAFNKGVKG 124 (395)
T ss_dssp CHHHHHHHHHHHTTC---SCCC--TTSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHHhc---cccc--cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCC
Confidence 789999999888762 2222 22334666777777766644 68999999999999999988751 246
Q ss_pred CEEEEc----cCcee----------------c-CCCcc----cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-C
Q 041151 156 DGVVLL----FHTTW----------------K-RQQIG----VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC-L 209 (463)
Q Consensus 156 d~Vlvp----~g~~~----------------~-~~~~~----~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~-~ 209 (463)
+.|+++ +|... + ..+.. .|+ ++|++++++ ++++|+++.++|++|.+ +
T Consensus 125 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~~~~~~~G~~~~ 197 (395)
T 3nx3_A 125 GQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDI-SSVEKLVNE------KTCAIILESVQGEGGINPA 197 (395)
T ss_dssp CEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCH-HHHHTTCCT------TEEEEEEESEECTTSCEEC
T ss_pred CEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCCCH-HHHHHhccC------CeEEEEEeCccCCCCcccC
Confidence 888885 22211 0 00111 178 999998875 78999888777777766 7
Q ss_pred CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 210 SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 210 s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
+.+++++|.++|++||+++|+||+|.++... +.. .... .+ + ....+.||||++ + +|+|+||++
T Consensus 198 ~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~-g~~-~~~~----~~----~---~~~d~~t~sK~~-~-~G~~~G~~~-- 260 (395)
T 3nx3_A 198 NKDFYKALRKLCDEKDILLIADEIQCGMGRS-GKF-FAYE----HA----Q---ILPDIMTSAKAL-G-CGLSVGAFV-- 260 (395)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSS-SGGG----GG----T---CCCSEEEECGGG-T-TTSCCEEEE--
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecccCCCcC-Ccc-hhHH----hc----C---CCCCEEEecccc-c-CCCceEEEE--
Confidence 8888999999999999999999999976442 111 1111 11 1 112345899999 6 499999999
Q ss_pred CCChhH-HHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCCcc
Q 041151 290 NIPPKT-VDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG----FNSCRNVV 363 (463)
Q Consensus 290 ~~~~~~-~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----L~~~pg~~ 363 (463)
+++++ ++.+..... .+++.+.+.+.++.++++. .. .+...++.+++.+.+.+. +..+|.+.
T Consensus 261 -~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~-----------~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 327 (395)
T 3nx3_A 261 -INQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEI-----------FK-EEKILENVNKLTPYLEQSLDELINEFDFCK 327 (395)
T ss_dssp -ECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHH-----------HH-HTTHHHHHHHHHHHHHHHHHHHHHHCTTEE
T ss_pred -EchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHH-----------HH-hhHHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 48888 788766543 5678899999998888641 11 012233333443444433 33455454
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
...+.| .++|+.+. .. .+...+ ...|.++||.+.|+. .+++||+++ .++++++++++
T Consensus 328 ~~~~~g-~~~~~~~~--~~----------~~~~~~-~~~l~~~Gi~v~~~~-------~~~iRi~~~~~~t~e~i~~~l~ 386 (395)
T 3nx3_A 328 KRKGLG-FMQGLSLD--KS----------VKVAKV-IQKCQENALLLISCG-------ENDLRFLPPLILQKEHIDEMSE 386 (395)
T ss_dssp EEEEET-TEEEEEEC--TT----------SCHHHH-HHHHHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHH
T ss_pred EEEeEE-EEEEEEeC--Cc----------chHHHH-HHHHHHCCCEEecCC-------CCEEEEECCCCCCHHHHHHHHH
Confidence 444444 45564443 21 123444 455667899999863 348999876 78899999999
Q ss_pred HHHHHHHH
Q 041151 442 SFKKFNDE 449 (463)
Q Consensus 442 ~l~~~l~~ 449 (463)
+|++++++
T Consensus 387 ~l~~~l~~ 394 (395)
T 3nx3_A 387 KLRKALKS 394 (395)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998763
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=229.98 Aligned_cols=302 Identities=12% Similarity=0.064 Sum_probs=207.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC-CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD-SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 160 (463)
|+.+++++.+.+.. ..|++ ..+..++|++++++++ .++|++|+|+++++..++.++ .+||+|++
T Consensus 31 p~~~~~a~~~~~~~-----~~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l~~l--~~gd~Vlv 95 (424)
T 2po3_A 31 RARLYERLDRALDS-----QWLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLAHAA--GLTGEVIM 95 (424)
T ss_dssp HHHHHHHHHHHHHH-----TCCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHH--TCCSEEEE
T ss_pred hHHHHHHHHHHHhc-----CCcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHc--CCCCEEEE
Confidence 78899998888765 24776 6788999999999985 258999999999999999998 37899999
Q ss_pred c-------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ + .+++.+|+ +.|++.+++ ++++|++++ |||...+ +++|+++|+
T Consensus 96 ~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~---~tG~~~~---l~~i~~la~ 162 (424)
T 2po3_A 96 PSMTFAATPHALRWIGLTPVFADIDPDTGNLDP-DQVAAAVTP------RTSAVVGVH---LWGRPCA---ADQLRKVAD 162 (424)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCH-HHHGGGCCT------TEEEEEEEC---GGGCCCC---HHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEEecCCCcCCcCH-HHHHHhhCc------CCcEEEEEC---CCCCcCC---HHHHHHHHH
Confidence 7 56665 2 23677899 999998876 799998864 8998754 788888999
Q ss_pred hCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC-hhHHHHHH
Q 041151 223 QENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP-PKTVDEIY 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~-~~~~~~l~ 300 (463)
++|++||+||+|+. +.+ ++. ++.. .. . |++.||||.. +++|+|+||++. + +++++.+.
T Consensus 163 ~~~~~li~Dea~~~g~~~-~~~---~~~~---------~~--d-i~~~S~sk~K-~l~~~~~G~~v~---~~~~l~~~l~ 222 (424)
T 2po3_A 163 EHGLRLYFDAAHALGCAV-DGR---PAGS---------LG--D-AEVFSFHATK-AVNAFEGGAVVT---DDADLAARIR 222 (424)
T ss_dssp HTTCEEEEECTTCTTCEE-TTE---ETTS---------SS--S-EEEEECCTTS-SSCCSSCEEEEE---SCHHHHHHHH
T ss_pred HcCCEEEEECccccCCeE-CCe---eccc---------cc--C-EEEEeCCCCC-CccCCCCeEEEe---CCHHHHHHHH
Confidence 99999999999994 545 221 1111 11 2 8899999655 557799999995 5 78888887
Q ss_pred hhhhh-c---cc------CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCc
Q 041151 301 KIASI-A---LS------PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF-TEG 369 (463)
Q Consensus 301 ~~~~~-~---~~------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g 369 (463)
..... . +. ...+.+.+++..+. ....++...++.+++++++.+.|+++||+.+.. +++
T Consensus 223 ~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~ 291 (424)
T 2po3_A 223 ALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLT-----------SLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRH 291 (424)
T ss_dssp HHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGG
T ss_pred HHHhcCccccccccccCcCCCcCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCC
Confidence 66431 1 10 11223333333321 223344566777778888999998888888765 444
Q ss_pred e---eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-------------CCC-------cEEE
Q 041151 370 A---MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-------------EGI-------FHLR 426 (463)
Q Consensus 370 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-------------~~~-------~~lR 426 (463)
+ +++| .+.++... .+. +..+ +.+.|.++||.+.+. |..+ ... ..+|
T Consensus 292 ~~~~~~~~-~i~~~~~~------~~~-~~~~-l~~~L~~~gI~v~~~--~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~ 360 (424)
T 2po3_A 292 GLNNHQYV-IVEIDEAT------TGI-HRDL-VMEVLKAEGVHTRAY--FSPGCHELEPYRGQPHAPLPHTERLAARVLS 360 (424)
T ss_dssp SCCCCCCE-EEEECHHH------HSS-CHHH-HHHHHHHTTEECBCT--TCSCGGGSTTTTTSCCCCCHHHHHHHTTEEE
T ss_pred CccccEEE-EEEECCcc------chh-hHHH-HHHHHHHCCCceecc--cCCccccchhhhhcCCCCChhHHHHhcCEEE
Confidence 3 2332 13333200 000 1333 455678899999872 2210 001 1277
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+++. .+++|+++++++|++++++..+.
T Consensus 361 l~~~~~~t~e~i~~~~~~L~~~~~~~~~~ 389 (424)
T 2po3_A 361 LPTGTAIGDDDIRRVADLLRLCATRGREL 389 (424)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHhhhHHH
Confidence 7744 78999999999999998876543
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=229.91 Aligned_cols=174 Identities=15% Similarity=0.141 Sum_probs=131.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cC
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KR 168 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~ 168 (463)
....++++.++++++ .+ ++++++++++++..++.+++ ++||+|+++ .|.++ ..
T Consensus 64 ~~~~~l~~~la~~~g------~~--~~i~~~sG~~a~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v 134 (398)
T 2rfv_A 64 PTTDALEKKLAVLER------GE--AGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFV 134 (398)
T ss_dssp HHHHHHHHHHHHHHT------CS--EEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHhC------CC--cEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEe
Confidence 344567777777663 22 45555556699999999997 899999997 23333 11
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
.. .|+ +.|++.+++ ++++|++++|+||||.+++ +++|+++|+++|+++|+||+|+.+.+. . .+
T Consensus 135 ~~--~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~--~---~~ 197 (398)
T 2rfv_A 135 DA--AKP-EEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQ--Q---PL 197 (398)
T ss_dssp CT--TSH-HHHHHHCCT------TEEEEEEESSBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--C---GG
T ss_pred CC--CCH-HHHHHhcCC------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC--C---ch
Confidence 11 278 999998876 7999999999999999997 888888999999999999999976551 1 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHH-HHHhhhh-h-cccCChHHHHHHHHhcC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVD-EIYKIAS-I-ALSPNVPAQIFMGLMVN 322 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~-~-~~~~~~~~q~~~~~~l~ 322 (463)
. + +.++++.|+||++ +.+|+|+ ||++. ++++++ .+..... . +.+.+.+.|.++.+.++
T Consensus 198 -~----~-------~~di~~~s~sK~~-~~~g~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (398)
T 2rfv_A 198 -Q----L-------GADIVVHSVTKYI-NGHGDVIGGIIVG---KQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVK 259 (398)
T ss_dssp -G----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE---CHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred -h----h-------CCcEEEEeCcccc-cCCCCceEEEEEE---CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhh
Confidence 1 1 1358999999999 7899998 99994 787776 6665554 3 45778888888888775
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=238.34 Aligned_cols=367 Identities=17% Similarity=0.165 Sum_probs=236.4
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHY 92 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~ 92 (463)
.++..++++.+..+.....+++..|.++++++.|.+.. ++ -. +.+ ++.+++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~yl------D~----------~~--~~~------~~~v~~a~~~~ 62 (467)
T 2oqx_A 7 FRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFI------DL----------LT--DSG------TGAVTQSMQAA 62 (467)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSE------EC----------SC--CSS------CSCCCHHHHHH
T ss_pred hheeeecccccccHHHHHHHHHHcCCCceeccCCCeeE------ec----------cc--CCC------cHHHHHHHHHH
Confidence 67788999988888888888888899999999987642 00 00 001 24566777776
Q ss_pred hhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC-----C----CEEEEc--
Q 041151 93 LSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE-----G----DGVVLL-- 161 (463)
Q Consensus 93 ~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~-----g----d~Vlvp-- 161 (463)
+.. ....|++..+..+||++++++++ .+++++|+|+++++..++.++. ++ | |+|+++
T Consensus 63 l~~---~~~~y~~~~~~~~l~~~la~~~~--------~~~v~~t~~gt~A~~~al~~~~-~~~~~~~G~~~~d~Ii~~~~ 130 (467)
T 2oqx_A 63 MMR---GDEAYSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLI-KKREQEKGLDRSKMVAFSNY 130 (467)
T ss_dssp TTS---CCCCSSSCHHHHHHHHHHHHHHC--------CSEEEEEC--CCSHHHHHHHHH-HHHHHHHCCCTTTCEEEESS
T ss_pred hcc---CcceeccCchhHHHHHHHHHHhC--------cCcEEEcCCcHHHHHHHHHHHh-ccccccCCCCccceEEeccc
Confidence 654 23468877788999999999984 3789999999999999999997 78 8 887775
Q ss_pred c-----------Ccee---------cC-----CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHH
Q 041151 162 F-----------HTTW---------KR-----QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLR 215 (463)
Q Consensus 162 ~-----------g~~~---------~~-----~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~ 215 (463)
+ |..+ +. ..+.+|+ +.|++++++.. .+++++|++++|+||| |.+++.++++
T Consensus 131 h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~ 207 (467)
T 2oqx_A 131 FFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDL-EGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLK 207 (467)
T ss_dssp CCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCH-HHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHH
T ss_pred ccccchhhhhccCcceeeccccccccCCCCCCccCCcCH-HHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHH
Confidence 2 2222 01 2346799 99999998521 0168999999999998 8999999999
Q ss_pred HHHHHhhhCCeEEEecccccc----------cccCCCCCccchHHHHHh-cCCCCCCCceEEEEecCCcccCCCCCceeE
Q 041151 216 EILRFCYQENLVLLGDEVYQQ----------NIYQDERPFVSSKKVLMD-MGLPFSKEVQLVSFHTVSKGYWGECGQRGG 284 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 284 (463)
+|+++|++||++||+|+++.. ..+ .+. +...+..+ + ...+ +++.|+||++ |++ . .|
T Consensus 208 ~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~-~g~---~~~~~~~~~~----~~~d--~~~~s~sK~~-g~~-~-Gg 274 (467)
T 2oqx_A 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY-KDW---TIEQITRETY----KYAD--MLAMSAKKDA-MVP-M-GG 274 (467)
T ss_dssp HHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGG-TTS---CHHHHHHHHG----GGCS--EEEEESSSTT-CCS-S-CE
T ss_pred HHHHHHHHcCCEEEEEchhhhhhhhhcccccccc-cCc---cHHHHhhhhh----ccCC--eEEEeccccc-CCC-C-ce
Confidence 999999999999999966543 123 122 33332210 0 0111 4578999998 766 1 27
Q ss_pred EEEecCCChh-HHHHHHhhhh----h-cc-cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 041151 285 YFEMTNIPPK-TVDEIYKIAS----I-AL-SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 285 ~~~~~~~~~~-~~~~l~~~~~----~-~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 357 (463)
|++. +++ +++.+.+... . .. ..+...+.++. ++. ..+..+.+ +...++..++++++.+.|+
T Consensus 275 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-al~------~~l~~~~~--~~~~~~~~~~~~~l~~~L~ 342 (467)
T 2oqx_A 275 LLCM---KDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAME-RLA------VGLYDGMN--LDWLAYRIAQVQYLVDGLE 342 (467)
T ss_dssp EEEE---CSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHH-HHH------HHHHHTTC--HHHHHHHHHHHHHHHHHHH
T ss_pred EEEe---cChhHHHHHHHHHHhhhccCCcccccchhhhHHH-HHH------HhhHhhhh--HHHHHHHHHHHHHHHHHHH
Confidence 7773 555 4444433221 0 10 01111121111 110 00011110 1233445677889999998
Q ss_pred cCCCcccccCCceeEEeeeccC--ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC--CCC--------CCCcEE
Q 041151 358 SCRNVVCNFTEGAMYSFPQIRL--PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF--GQK--------EGIFHL 425 (463)
Q Consensus 358 ~~pg~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f--~~~--------~~~~~l 425 (463)
+. |+.+. |.+++++|+++.. +. . + .... +...++..++.++||.+.|+..| +.. .+.+++
T Consensus 343 ~~-~~~~~-~~~~~~~~~~~~~~~~~-~-~---~~~~-~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~i 414 (467)
T 2oqx_A 343 EI-GVVCQ-QAGGHAAFVDAGKLLPH-I-P---ADQF-PAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELL 414 (467)
T ss_dssp HT-TCCEE-EECSSCEEEEHHHHSTT-S-C---GGGC-HHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred HC-CCeee-cCCceEEEEechhhccc-C-C---cccc-cHHHHHHHHHHhcCceecccccccccccccccccccCccCeE
Confidence 88 88877 7788999976631 10 0 0 0000 02233445548899999996543 210 123689
Q ss_pred EEEec---CCcCcHHHHHHHHHHHHHHHH
Q 041151 426 RTTIL---PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 426 Ris~~---~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|++++ .+++++++++++|++++++..
T Consensus 415 Rl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 415 RLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp EECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 99999 688999999999999987643
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=235.24 Aligned_cols=312 Identities=13% Similarity=0.048 Sum_probs=204.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
|+.+++++.+++... ..|+...+..+++.++++++.+..+.. ..++|++|+|+++++..+++.... ..++.|++
T Consensus 82 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~ 156 (453)
T 4ffc_A 82 HPAVAAAIADQATHF----THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAEAVENAIKVARLATGRPAVVA 156 (453)
T ss_dssp CHHHHHHHHHHHHHC----SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHHhc----cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEE
Confidence 889999999988762 345555566778888888887765422 257999999999999999987641 24467777
Q ss_pred c----cCce-------------------------e-c-C----CCcccChH-------HHHHHHHHHHHhcCCceeEEEE
Q 041151 161 L----FHTT-------------------------W-K-R----QQIGVLII-------NDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 161 p----~g~~-------------------------~-~-~----~~~~~d~~-------~~l~~~l~~~~~~~~~~~~i~l 198 (463)
. +|.. . + . +.++.+.. +.|++.+.. +..++++
T Consensus 157 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~------~~~aavi 230 (453)
T 4ffc_A 157 FDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGA------QSLAAII 230 (453)
T ss_dssp ETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCG------GGEEEEE
T ss_pred EcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCC------CCEEEEE
Confidence 4 1111 0 1 0 12223210 233333222 4567778
Q ss_pred ECCCCCCc--cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccC
Q 041151 199 INPGNPTG--QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYW 276 (463)
Q Consensus 199 ~~p~NPtG--~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 276 (463)
+.|+|++| ...+.+.+++|.++|++||++||+||+|..+... +. ....... +. ...+.||||++
T Consensus 231 ~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~-g~-~~a~~~~--~~---------~pdi~t~sK~~- 296 (453)
T 4ffc_A 231 IEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFART-GA-WFASEHE--GI---------VPDIVTMAKGI- 296 (453)
T ss_dssp ECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSTHHHH--TC---------CCSEEEECGGG-
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcc-cc-cchhhhc--CC---------CcchHhhhhhh-
Confidence 88988887 4457788999999999999999999999986442 21 1122211 11 12245799999
Q ss_pred CCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 277 GECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 277 g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
+. |+|+||++ +++++++.+.+... .+++.+++.|.++.++|+ ... .+.+.++++++.+++.+.
T Consensus 297 ~~-G~~~G~~~---~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~-~~~~~~~~~~~~~~l~~~ 360 (453)
T 4ffc_A 297 AG-GMPLSAVT---GRAELMDAVYAGGLGGTYGGNPVTCAAAVAALG-----------VMR-ELDLPARARAIEASVTSR 360 (453)
T ss_dssp GT-TSSCEEEE---EEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH-----------HHH-HTTHHHHHHHHHHHHHHH
T ss_pred cC-CcCeEEEE---ECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHH-----------Hhh-hhhHHHHHHHHHHHHHHH
Confidence 65 99999998 58888888766543 578889999999988874 111 112334444444444444
Q ss_pred h----hcCCCcccccCCceeEEeeeccC-----ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEE
Q 041151 356 F----NSCRNVVCNFTEGAMYSFPQIRL-----PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLR 426 (463)
Q Consensus 356 L----~~~pg~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lR 426 (463)
| ..+|++....+.| .++|+.+.- |... ....+...|.++||.+.|+..|+ +++|
T Consensus 361 l~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~Gv~v~~~~~~~-----~~iR 423 (453)
T 4ffc_A 361 LSALAEEVDIIGEVRGRG-AMLAIEIVKPGTLEPDAA-----------LTKSIAAEALSQGVLILTCGTFG-----NVIR 423 (453)
T ss_dssp HHHHHHHCSSEEEEEEET-TEEEEEEBCTTSCCBCHH-----------HHHHHHHHHHHTTEECCEECTTS-----CEEE
T ss_pred HHHHHhhCCCeEEEEeec-eEEEEEEecCcccCCCHH-----------HHHHHHHHHHhCCCEEecCCCCC-----CEEE
Confidence 4 4455555444444 455544421 1110 12334455667899999976554 3799
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|+++ .+++++++++++|+++++++.
T Consensus 424 i~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 424 LLPPLVIGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9877 789999999999999998764
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=231.92 Aligned_cols=315 Identities=10% Similarity=0.020 Sum_probs=198.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--CCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG--EGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~gd~Vl 159 (463)
|+.+++++.+++... ....|+. ....+|++++++++ + .+++|++|+|+++++..+++.+. . +++.|+
T Consensus 73 ~p~v~~a~~~~~~~~--~~~~~~~-~~~~~l~~~la~~~----~---~~~~v~~~~sGsea~~~ai~~a~-~~~~~~~vi 141 (434)
T 3l44_A 73 HPHITKAITTAAENG--VLYGTPT-ALEVKFAKMLKEAM----P---ALDKVRFVNSGTEAVMTTIRVAR-AYTGRTKIM 141 (434)
T ss_dssp CHHHHHHHHHHHHHC--SCCSSCC-HHHHHHHHHHHHHC----T---TCSEEEEESSHHHHHHHHHHHHH-HHHCCCEEE
T ss_pred CHHHHHHHHHHHHhC--cCCCCCC-HHHHHHHHHHHHhC----C---CCCEEEEeCchHHHHHHHHHHHH-HhhCCCEEE
Confidence 789999999888762 2233432 33456666666654 2 57899999999999999999875 4 678888
Q ss_pred Ec----cCcee---------------cCCCcc-------------cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 160 LL----FHTTW---------------KRQQIG-------------VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 160 vp----~g~~~---------------~~~~~~-------------~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
++ +|... +..... -|+ +.|++++++.. .++++|+++.++|++|.
T Consensus 142 ~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~~~~vi~ep~~~~~G~ 217 (434)
T 3l44_A 142 KFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNV-ETLKEALDKWG---HEVAAILVEPIVGNFGI 217 (434)
T ss_dssp EETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCH-HHHHHHHHHHG---GGEEEEEECSSBCTTSC
T ss_pred EEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccH-HHHHHHHHhCC---CCEEEEEEcCCCCCCCC
Confidence 85 22111 001101 178 99999998531 14555554444555665
Q ss_pred CC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 208 CL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 208 ~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+. +++.+++|.++|++||++||+||+|.++ .. +. ....... +. .. -+.||||++ + +|+|+||+
T Consensus 218 ~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~-g~-~~~~~~~--~~----~~-----di~t~sK~~-~-~G~~iG~~ 281 (434)
T 3l44_A 218 VEPKPGFLEKVNELVHEAGALVIYDEVITAF-RF-MY-GGAQDLL--GV----TP-----DLTALGKVI-G-GGLPIGAY 281 (434)
T ss_dssp BCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TS-SS-SCHHHHH--TC----CC-----SEEEEEGGG-G-TTSSCEEE
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeccccce-ec-cc-cHHHHHc--CC----CC-----Ceeehhhhh-c-CCcCeeeE
Confidence 55 8889999999999999999999999987 42 22 1112111 11 11 245899999 6 79999999
Q ss_pred EecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 041151 287 EMTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS---- 358 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---- 358 (463)
+ +++++++.+.+. ...+++.+++.|.++.++++. ..+ ++..++++++++.+.+.|++
T Consensus 282 ~---~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~-----------~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 346 (434)
T 3l44_A 282 G---GKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEV-----------LQQ-EGLYEKLDELGATLEKGILEQAAK 346 (434)
T ss_dssp E---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHH-----------HTS-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E---EcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHH-----------HHc-ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 589998888662 224678899999988887641 111 22344455555555555544
Q ss_pred CCCcccccCCceeEEeeeccCCh--hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcH
Q 041151 359 CRNVVCNFTEGAMYSFPQIRLPP--KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436 (463)
Q Consensus 359 ~pg~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i 436 (463)
++.+....+.|.++ ++.+.-+. ..... .. ........+...|.++||.+.|+.. .++|+++..+++++
T Consensus 347 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~rl~~~~t~e~i 416 (434)
T 3l44_A 347 HNIDITLNRLKGAL-TVYFTTNTIEDYDAA-QD-TDGEMFGKFFKLMLQEGVNLAPSKY-------EAWFLTTEHTKEDI 416 (434)
T ss_dssp TTCCEEEEEETTEE-EEEESSSCCCSHHHH-HH-SCHHHHHHHHHHHHHTTEECCSSTT-------CCEECCTTCCHHHH
T ss_pred CCCCEEEEeeccEE-EEEEecCcccchhhc-cc-cCHHHHHHHHHHHHHCCeEEeecCC-------CcEEEecccCHHHH
Confidence 33233334445444 43332110 00000 00 0000112344556678999998642 25899877999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDEFME 452 (463)
Q Consensus 437 ~~~~~~l~~~l~~~~~ 452 (463)
++++++|+++++++++
T Consensus 417 ~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 417 EYTIEAVGRAFAALAD 432 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987754
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=219.84 Aligned_cols=350 Identities=11% Similarity=0.052 Sum_probs=219.8
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
..+++++..+.++....+.....+ ..+.++|..+.... |+.++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~~~~~~-------------------------------~~~v~~a 51 (425)
T 3ecd_A 7 PFFSQSLAERDASVRGAILKELER----QQSQVELIASENIV-------------------------------SRAVLDA 51 (425)
T ss_dssp HHHHCCHHHHCHHHHHHHHHHHHH----HHHSEECCTTCCCC-------------------------------CHHHHHH
T ss_pred hHHHHHHHhhCHHHHHHHHHHHHH----HhcceeeecccCCC-------------------------------CHHHHHH
Confidence 357788888888766655433222 23468886654432 8899999
Q ss_pred HHHHhhhcCC----CCCccCCCCCCHHHHHHHH-HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--
Q 041151 89 AKHYLSLTSG----GLGAYSDSRGIPGVRKEVA-EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 89 ~~~~~~~~~~----~~~~Y~~~~g~~~lr~~ia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-- 161 (463)
+.+.+.+... ....|+.. ...++.++++ +.+.+..|. +. ..++++|+++++..++.+++ ++||+|+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~--~~-~~v~~~~Gs~a~~~al~~~~-~~gd~Vi~~~~ 126 (425)
T 3ecd_A 52 QGSVLTNKYAEGYPGKRYYGGC-EFADEVEALAIERVKRLFNA--GH-ANVQPHSGAQANGAVMLALA-KPGDTVLGMSL 126 (425)
T ss_dssp HTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTC--SE-EECCCSSHHHHHHHHHHHHC-CTTCEEEEECC
T ss_pred HhhhhhcccccCCCcchhcCCC-hHHHHHHHHHHHHHHHHhCC--CC-ceeecCchHHHHHHHHHHcc-CCCCEEEEccc
Confidence 9887743100 01112222 1222333333 444444342 22 23457888899999999997 999999997
Q ss_pred -cCc---------------ee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 162 -FHT---------------TW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 162 -~g~---------------~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++. ++ ..+.+.+|+ +.|++.+++. ++++|++++|+||+- . ++++|.++
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~~~~~--~---~l~~i~~l 195 (425)
T 3ecd_A 127 DAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDY-DQVEALAQQH-----KPSLIIAGFSAYPRK--L---DFARFRAI 195 (425)
T ss_dssp ------------------CEEEEECCCTTTSSCCH-HHHHHHHHHH-----CCSEEEEECSCCCSC--C---CHHHHHHH
T ss_pred ccccceecchhhhhcccceeeeecCCCcccCccCH-HHHHHHHhhc-----CCcEEEEccccCCCc--C---CHHHHHHH
Confidence 211 11 223578999 9999999854 799999999999753 2 36889999
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|++||++||+||+|....+..+.....+ .. ..|++.|+||++ +|+|+||++. .++++.+.+.
T Consensus 196 ~~~~~~~li~De~~~~g~~~~~~~~~~~-----------~~--~di~~~s~sK~l---~g~~~g~~~~--~~~~~~~~~~ 257 (425)
T 3ecd_A 196 ADSVGAKLMVDMAHIAGVIAAGRHANPV-----------EH--AHVVTSTTHKTL---RGPRGGFVLT--NDEEIAKKIN 257 (425)
T ss_dssp HHHHTCEEEEECGGGHHHHHTTSSCCGG-----------GT--CSEEEEESSGGG---CCCSCEEEEE--SCHHHHHHHH
T ss_pred HHHcCCEEEEECcChHhhhhcccccCch-----------hc--CcEEEecCCccc---CCCCcEEEEe--CCHHHHHHHH
Confidence 9999999999999654322122222111 11 127899999987 5789999995 3367777776
Q ss_pred hhhhhc--ccCChHHHHHHHHhcCCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-CceeEEeee
Q 041151 301 KIASIA--LSPNVPAQIFMGLMVNPLKPGDISYEQF-VRESKGILESLRRRARMMTDGFNSCRNVVCNFT-EGAMYSFPQ 376 (463)
Q Consensus 301 ~~~~~~--~~~~~~~q~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-~g~~~~~~~ 376 (463)
...... .+++...+.++..++. .. ..+.+..+++++++++++.+.|.+. |+.+..+ .+++++|+.
T Consensus 258 ~~~~~~~~~~~~~~~~~a~~~a~~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 326 (425)
T 3ecd_A 258 SAVFPGLQGGPLMHVIAGKAVAFG----------EALTDDFKTYIDRVLANAQALGDVLKAG-GVDLVTGGTDNHLLLVD 326 (425)
T ss_dssp HHHC-----CCCHHHHHHHHHHHH----------HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEE
T ss_pred hhhCccccCCccHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCeeccCCCCceEEEEE
Confidence 654322 2333333333333321 11 1334567888899999999999886 8877654 466777755
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC---CCCCcEEEEEec------CCcCcHHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ---KEGIFHLRTTIL------PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~---~~~~~~lRis~~------~~~e~i~~~~~~l~~~l 447 (463)
+. .. ..+.+.+...|+++||.+.++..++. .....++|+++. .+++++++++++|++++
T Consensus 327 ~~--~~----------~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l 394 (425)
T 3ecd_A 327 LR--PK----------GLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVF 394 (425)
T ss_dssp CG--GG----------TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred eC--CC----------CCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHH
Confidence 43 11 01345566778889999994432221 122357999965 24789999999999888
Q ss_pred HHH
Q 041151 448 DEF 450 (463)
Q Consensus 448 ~~~ 450 (463)
++.
T Consensus 395 ~~~ 397 (425)
T 3ecd_A 395 EAL 397 (425)
T ss_dssp HHH
T ss_pred hcc
Confidence 765
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-24 Score=217.86 Aligned_cols=309 Identities=11% Similarity=0.007 Sum_probs=207.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCcc------CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAY------SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y------~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
|+.+++++.+.+.+. ...+| .......++++.+.+.+.+.+| +++++|++++| ++++..++.+++ ++|
T Consensus 38 ~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~~sG-t~a~~~~~~~~~-~~g 111 (417)
T 3n0l_A 38 LPEVMEVMGSILTNK--YAEGYPGKRYYGGCEFVDEIETLAIERCKKLFN--CKFANVQPNSG-SQANQGVYAALI-NPG 111 (417)
T ss_dssp CHHHHHHHTBGGGGC--CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHS-CTT
T ss_pred CHHHHHHHhhhhhcc--ccccCCCccccccchHHHHHHHHHHHHHHHHhC--CCCcceEeccH-HHHHHHHHHHhc-CCC
Confidence 888999988777432 11223 2223334555544445544445 45667988888 799999999998 999
Q ss_pred CEEEEc---c------Cce---------e----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 156 DGVVLL---F------HTT---------W----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 156 d~Vlvp---~------g~~---------~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
|+|+++ + +.. + ....+.+|+ +.|++.+++. ++++|++++|+| |..++
T Consensus 112 d~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~~--G~~~~--- 180 (417)
T 3n0l_A 112 DKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDY-EKVREIAKKE-----KPKLIVCGASAY--ARVID--- 180 (417)
T ss_dssp CEEEEECC----------------CCSEEEEECCCTTSSCCH-HHHHHHHHHH-----CCSEEEECCSSC--CSCCC---
T ss_pred CEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCH-HHHHHHHHhc-----CCeEEEECCccc--CccCC---
Confidence 999997 1 111 1 234567899 9999999843 799999888887 77877
Q ss_pred HHHHHHHhhhCCeEEEeccccc-ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 214 LREILRFCYQENLVLLGDEVYQ-QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+++|.++|++||++||+||+|. ...+ .+..+..+ . ...|++.|+||++ +|+|+||++. .+
T Consensus 181 l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~~-----------~--~~di~~~s~sK~l---~g~~~G~~~~--~~ 241 (417)
T 3n0l_A 181 FAKFREIADEIGAYLFADIAHIAGLVV-AGEHPSPF-----------P--YAHVVSSTTHKTL---RGPRGGIIMT--ND 241 (417)
T ss_dssp HHHHHHHHHHHTCEEEEECTTTHHHHH-TTSSCCCT-----------T--TCSEEEEESSTTT---CSCSCEEEEE--SC
T ss_pred HHHHHHHHHHcCCEEEEECccchhhhh-cccCCCcc-----------c--cceEEEeeCcccc---CCCCeeEEEE--CC
Confidence 7788889999999999999964 3333 22211111 1 1238899999987 6889999995 23
Q ss_pred hhHHHHHHhhhh-hc-ccCChHHHHHHHHhcCCCCCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CC
Q 041151 293 PKTVDEIYKIAS-IA-LSPNVPAQIFMGLMVNPLKPGDISYEQ-FVRESKGILESLRRRARMMTDGFNSCRNVVCNF-TE 368 (463)
Q Consensus 293 ~~~~~~l~~~~~-~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~ 368 (463)
+++++.+..... .. .+++...+.++..++. . ...+.+..++++.++++++.+.|.+. |+.+.. +.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 310 (417)
T 3n0l_A 242 EELAKKINSAIFPGIQGGPLMHVIAAKAVGFK----------FNLSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGT 310 (417)
T ss_dssp HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHH----------HHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred HHHHHHHhhhhCCcccCCcHHHHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCC
Confidence 788888877654 22 2333444444443331 1 11334567778888899999999884 877654 23
Q ss_pred ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC---CCCcEEEEEec------CCcCcHHHH
Q 041151 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK---EGIFHLRTTIL------PAEEDMPAI 439 (463)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~---~~~~~lRis~~------~~~e~i~~~ 439 (463)
.+.++|+++..+ + .+...+..+|.++||.+.++..+... -....+|+++. .++++++++
T Consensus 311 ~~~~~~~~~~~~-~-----------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~ 378 (417)
T 3n0l_A 311 DNHLVLMSFLDR-E-----------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIV 378 (417)
T ss_dssp SSSEEEEECTTS-S-----------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred CceEEEEEcccC-C-----------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHH
Confidence 455777555421 1 13445667788999999976544321 12346999987 357999999
Q ss_pred HHHHHHHHHH
Q 041151 440 MESFKKFNDE 449 (463)
Q Consensus 440 ~~~l~~~l~~ 449 (463)
+++|++++++
T Consensus 379 ~~~l~~~l~~ 388 (417)
T 3n0l_A 379 SNYIADILDD 388 (417)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999988754
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=227.60 Aligned_cols=307 Identities=13% Similarity=0.070 Sum_probs=198.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--------G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~ 153 (463)
++.+++++.+++.... .|+.. ...+++.++++.+.+..| .++|++++|+++++..+++++.. +
T Consensus 83 ~p~v~~ai~~~~~~~~----~~~~~-~~~~~~~~l~~~la~~~g----~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~ 153 (433)
T 1z7d_A 83 HPNILNAMINQAKNLT----ICSRA-FFSVPLGICERYLTNLLG----YDKVLMMNTGAEANETAYKLCRKWGYEVKKIP 153 (433)
T ss_dssp CHHHHHHHHHHHTTCS----CCCTT-SEEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHHhCC----CccCC-cCCHHHHHHHHHHHhhcC----CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCC
Confidence 8899999998887631 12111 123444445544444433 58999999999999999987530 3
Q ss_pred CC-CEEEEc---c-Ccee------c------------CCCc---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 154 EG-DGVVLL---F-HTTW------K------------RQQI---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 154 ~g-d~Vlvp---~-g~~~------~------------~~~~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
+| +.|+++ + |... . .... -.|+ +.|+++++.. ++++|+++..+|+||.
T Consensus 154 ~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~-~~le~~l~~~-----~~~~vi~ep~~~~~G~ 227 (433)
T 1z7d_A 154 ENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDL-EALEEELKDP-----NVCAFIVEPIQGEAGV 227 (433)
T ss_dssp TTCCEEEEETTC--------------------------CEEEECTTCH-HHHHHHHTST-----TEEEEEECSSBSTTTS
T ss_pred CCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCCCH-HHHHHHhCCC-----CEEEEEEECCCCCCCc
Confidence 67 888886 2 1111 0 0000 1378 9999998421 6777665544677897
Q ss_pred C-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEE
Q 041151 208 C-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGY 285 (463)
Q Consensus 208 ~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~ 285 (463)
+ ++.+.+++|.++|++||+++|+||+|..+... +. ...+. .++. .. . + .||||++ + +| +|+||
T Consensus 228 ~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~-g~-~~~~~----~~~~--~~--d-i--~t~sK~l-~-~G~~~~G~ 292 (433)
T 1z7d_A 228 IVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT-GK-LLCVH----HYNV--KP--D-V--ILLGKAL-S-GGHYPISA 292 (433)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SSGGG----GGTC--CC--S-E--EEECGGG-G-TTSSCCEE
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcC-Cc-chhhH----hcCC--CC--C-E--EEECccc-c-CCCCCeEE
Confidence 5 68889999999999999999999999865431 21 11111 1100 11 1 2 3899999 6 79 99999
Q ss_pred EEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----C
Q 041151 286 FEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----R 360 (463)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----p 360 (463)
++ +++++++.+.... ..+++.+++.+.++.++|+ ...+ +.+.++++++++++.+.|+++ |
T Consensus 293 v~---~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~ 357 (433)
T 1z7d_A 293 VL---ANDDIMLVIKPGEHGSTYGGNPLAASICVEALN-----------VLIN-EKLCENAEKLGGPFLENLKRELKDSK 357 (433)
T ss_dssp EE---ECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred EE---ECHHHHhhhccccccccCCCCHHHHHHHHHHHH-----------HHHh-ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99 4888877765533 2466778888888877763 1211 245666777777888777653 3
Q ss_pred CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHH
Q 041151 361 NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPA 438 (463)
Q Consensus 361 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~ 438 (463)
.+....+ .+.++|+.+.-.. .+..+++. .|.++||.+.|+ +.+++|++++ .+++++++
T Consensus 358 ~~~~~~~-~g~~~~i~~~~~~-----------~~~~~~~~-~l~~~Gv~v~~~-------~~~~iRi~~~~~~t~e~i~~ 417 (433)
T 1z7d_A 358 IVRDVRG-KGLLCAIEFKNEL-----------VNVLDICL-KLKENGLITRDV-------HDKTIRLTPPLCITKEQLDE 417 (433)
T ss_dssp TEEEEEE-ETTEEEEEECTTT-----------CCHHHHHH-HHHHTTEECCEE-------TTTEEEECCCTTCCHHHHHH
T ss_pred CeEEEEe-eeeEEEEEEccCh-----------hHHHHHHH-HHHHCCeEEecC-------CCCEEEEECCcCCCHHHHHH
Confidence 2222333 3455665553110 12344444 455689999985 1348999887 78999999
Q ss_pred HHHHHHHHHHHHHHH
Q 041151 439 IMESFKKFNDEFMEQ 453 (463)
Q Consensus 439 ~~~~l~~~l~~~~~~ 453 (463)
++++|+++++++.++
T Consensus 418 ~l~~l~~~l~~~~~~ 432 (433)
T 1z7d_A 418 CTEIIVKTVKFFDER 432 (433)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876544
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=225.31 Aligned_cols=303 Identities=14% Similarity=0.109 Sum_probs=197.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCC---------CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSR---------GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~---------g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~ 152 (463)
|+.+++++.+.+... ..|+... ...++|++++++++ +++++|++|+|+++++..++.++.+
T Consensus 31 ~~~v~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~a~~~~~~~~~~ 100 (432)
T 3a9z_A 31 EPEVIQAVTEAMKEA----WGNPSSSYVAGRKAKDIINTARASLAKMIG------GKPQDIIFTSGGTESNNLVIHSTVR 100 (432)
T ss_dssp CHHHHHHHHHHHHHC----CSCTTCSSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh----cCCCccCcHHHHHHHHHHHHHHHHHHHHcC------CCcCeEEEeCChHHHHHHHHHHHHh
Confidence 889999998887652 2333211 12588888888885 6778999999999999999998841
Q ss_pred -------CCCCEEEEc------------------------------cCcee---cC--CCcccChHHHHHHHHHHHHhcC
Q 041151 153 -------GEGDGVVLL------------------------------FHTTW---KR--QQIGVLIINDLQQSVAQARSKG 190 (463)
Q Consensus 153 -------~~gd~Vlvp------------------------------~g~~~---~~--~~~~~d~~~~l~~~l~~~~~~~ 190 (463)
++||+|+++ .|.++ +. .++.+|+ +.|++++++
T Consensus 101 ~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~-~~l~~~i~~----- 174 (432)
T 3a9z_A 101 CFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEV-EDILAAVRP----- 174 (432)
T ss_dssp HHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCH-HHHHHTCCT-----
T ss_pred hhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCH-HHHHHhccC-----
Confidence 378766654 14444 22 2556899 999998876
Q ss_pred CceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC----------eEEEecccccccccCCCCCccchHHHHHhcCCCCC
Q 041151 191 ITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN----------LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFS 260 (463)
Q Consensus 191 ~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~----------~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
++++|++++|+||||.+++. ++|.++|++++ ++||+|++|+.+. ...++... .
T Consensus 175 -~~~~v~~~~~~nptG~~~~~---~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~-----~~~~~~~~--------~ 237 (432)
T 3a9z_A 175 -TTCLVTIMLANNETGVIMPI---SEISRRIKALNQIRAASGLPRVLVHTDAAQALGK-----RRVDVEDL--------G 237 (432)
T ss_dssp -TEEEEECCSBCTTTCBBCCH---HHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT-----SCCCHHHH--------C
T ss_pred -CceEEEEECcccCcccccCH---HHHHHHHHhcCcccccccCCceEEEEEchhhhCC-----cccChhhc--------C
Confidence 79999999999999999995 56777888998 9999999997532 12233332 2
Q ss_pred CCceEEEEecCCcccCCCCCceeEEEEecCCChhH-HHHHHhh-------hh-hcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 261 KEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT-VDEIYKI-------AS-IALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 261 ~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~-~~~l~~~-------~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
.+ +++.|+||++ | .|+||+++ +++. ...+... .. ..++.+...+.++.++++
T Consensus 238 ~d---~~~~s~~K~~-g---~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~--------- 298 (432)
T 3a9z_A 238 VD---FLTIVGHKFY-G---PRIGALYV---RGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAD--------- 298 (432)
T ss_dssp CS---EEEEEGGGTT-C---CSCEEEEE---TTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHH---------
T ss_pred CC---EEEEehhHhc-C---CcceEEEE---ccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHH---------
Confidence 22 5689999976 4 56999996 5443 2222211 11 234567777777766653
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc--cC-----CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHH
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSCRNVVCN--FT-----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLE 404 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~--~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 404 (463)
......++++++++++++++.+.|++++|+.+. .+ ..+..+++.+.-. + .+...+. ..+
T Consensus 299 -~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~-~~l- 364 (432)
T 3a9z_A 299 -LVSENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGS-Q----------LRGYMVL-AQC- 364 (432)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECST-T----------CCHHHHH-HHC-
T ss_pred -HHHhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCC-C----------CcHHHHH-HHh-
Confidence 122345678888999999999999886565432 22 1122233222210 0 0122322 222
Q ss_pred hcCeEeeCCCCCCCC--------------C---CCcEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 405 ATGISTVPGSGFGQK--------------E---GIFHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 405 ~~gI~v~pg~~f~~~--------------~---~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.||.+.+|..|... . ..+++||+++ .+++++++++++|++++++++
T Consensus 365 -~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 365 -QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLE 429 (432)
T ss_dssp -SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 37888887655321 0 1358999999 489999999999999987654
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-24 Score=217.91 Aligned_cols=346 Identities=12% Similarity=0.022 Sum_probs=223.2
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+.+++..+.++.+..+.....+. .++|+|..+ ++ +. |+.+++++
T Consensus 21 ~~~~~l~~~~~~i~~~~~~~~~~~----~~~i~l~~~-~~-------------------------~~-----~~~v~~a~ 65 (447)
T 3h7f_A 21 SMSAPLAEVDPDIAELLAKELGRQ----RDTLEMIAS-EN-------------------------FV-----PRAVLQAQ 65 (447)
T ss_dssp GGGCCHHHHCHHHHHHHHHHHHHH----HHSEECCTT-CC-------------------------CC-----CHHHHHHH
T ss_pred hhHHHHHhCCHHHHHHHHHHHHHH----hCceeEecC-CC-------------------------CC-----CHHHHHHH
Confidence 456677777777666554433222 257888543 33 11 88999999
Q ss_pred HHHhhhcCCCCCccCCC---CCCHHHH--HHHH-HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--
Q 041151 90 KHYLSLTSGGLGAYSDS---RGIPGVR--KEVA-EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~---~g~~~lr--~~ia-~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-- 161 (463)
.+.+.+. ...+|+.. .|...++ ++++ +++.+.+|.+ . ..++++|+++++..++.+++ +|||+|+++
T Consensus 66 ~~~~~~~--~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~--~-~~v~~~sGs~a~~~a~~~~~-~~Gd~Vl~~~~ 139 (447)
T 3h7f_A 66 GSVLTNK--YAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAE--F-ANVQPHSGAQANAAVLHALM-SPGERLLGLDL 139 (447)
T ss_dssp TSGGGGC--CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS--E-EECCCSSHHHHHHHHHHHHC-CTTCEEEEECG
T ss_pred HHHhcCC--ccccCCcccccCccHHHHHHHHHHHHHHHHHcCCC--c-eEEEeCCHHHHHHHHHHHhc-CCCCEEEecCc
Confidence 8777531 22344332 2444444 5555 6666555533 2 23337777899999999997 999999997
Q ss_pred -cCc---------------ee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 162 -FHT---------------TW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 162 -~g~---------------~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
++. .+ ....+.+|+ +.|++.++.. ++++|++++|+||++. ++++|.++
T Consensus 140 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~i~~~~~~~~~~~-----~l~~i~~l 208 (447)
T 3h7f_A 140 ANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDM-DAVRATALEF-----RPKVIIAGWSAYPRVL-----DFAAFRSI 208 (447)
T ss_dssp GGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCH-HHHHHHHHHH-----CCSEEEEECSSCCSCC-----CHHHHHHH
T ss_pred ccccccchhhhhhhcCCeeEEEEcCcCcccCCcCH-HHHHHHHHhc-----CCeEEEEcCCCCCCcc-----CHHHHHHH
Confidence 221 11 124567999 9999999764 7899999999999987 48889999
Q ss_pred hhhCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 221 CYQENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 221 a~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
|+++|++||+||+|.. +.+ .+.....+ + . ..|++.|+||++ +|+|+||++ +++++++.+
T Consensus 209 ~~~~g~lli~Dea~~~g~~~-~g~~~~~~----~------~---~di~~~s~sK~l---~G~~gG~i~---~~~~~~~~l 268 (447)
T 3h7f_A 209 ADEVGAKLLVDMAHFAGLVA-AGLHPSPV----P------H---ADVVSTTVHKTL---GGGRSGLIV---GKQQYAKAI 268 (447)
T ss_dssp HHHHTCEEEEECTTTHHHHH-TTSSCCST----T------T---CSEEEEESSGGG---CCCSCEEEE---ECGGGHHHH
T ss_pred HHHcCCEEEEECCchhhhhc-CCCCCCCC----C------C---CcEEEecCCcCC---CCCCeEEEE---ECHHHHHHH
Confidence 9999999999999753 333 12211111 1 1 127799999988 388999999 488898888
Q ss_pred Hhhhh-hcc-cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCccccc-CCceeE
Q 041151 300 YKIAS-IAL-SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC----RNVVCNF-TEGAMY 372 (463)
Q Consensus 300 ~~~~~-~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg~~~~~-~~g~~~ 372 (463)
.+... ... +++...+.++..++... ...+.+..++++.++++.+.+.|.+. +|+.+.. +.++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~a~~~a~~~~---------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~ 339 (447)
T 3h7f_A 269 NSAVFPGQQGGPLMHVIAGKAVALKIA---------ATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHL 339 (447)
T ss_dssp HHHHTTTTCSSCCHHHHHHHHHHHHHT---------TSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSE
T ss_pred hhhcCCcccCCccHHHHHHHHHHHHHh---------hCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCE
Confidence 77643 222 23333344444443210 01234557778888899999998875 5777654 346677
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee----CCCCCCCCCCCcEEEEEec------CCcCcHHHHHHH
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV----PGSGFGQKEGIFHLRTTIL------PAEEDMPAIMES 442 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~lRis~~------~~~e~i~~~~~~ 442 (463)
+|+++.... .+...+..+|+++||.+. |+..++. ....++||++. .++++++++++.
T Consensus 340 ~~~~~~~~~------------~~~~~~~~~l~~~GI~v~~~~i~~~~~~p-~~~~~lRig~~~~~~~~~~~eei~~~~~~ 406 (447)
T 3h7f_A 340 VLVDLRDSP------------LDGQAAEDLLHEVGITVNRNAVPNDPRPP-MVTSGLRIGTPALATRGFGDTEFTEVADI 406 (447)
T ss_dssp EEEECTTSS------------CCHHHHHHHHHHTTEECBC--------------CEEEEECHHHHHHTCCHHHHHHHHHH
T ss_pred EEEEcCCCC------------CCHHHHHHHHHHCCeEEecccCCCCCCCC-CCCCceeccCHHHhhCCCCHHHHHHHHHH
Confidence 786664221 134556778888899998 5532222 12347999986 457999999999
Q ss_pred HHHHHHH
Q 041151 443 FKKFNDE 449 (463)
Q Consensus 443 l~~~l~~ 449 (463)
|++++++
T Consensus 407 l~~~l~~ 413 (447)
T 3h7f_A 407 IATALAT 413 (447)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9888753
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=222.94 Aligned_cols=294 Identities=14% Similarity=0.131 Sum_probs=200.6
Q ss_pred cHHHHHHHHHHhhhcCCC------CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-c-EEEcCCcHHHHHHHHHHHhcC
Q 041151 82 PADAIARAKHYLSLTSGG------LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-L-IFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~-i~~t~G~~~al~~~~~~l~~~ 153 (463)
|+.+++++.+.+.+.... ...|.+ +..++++++++.+.+.+|. +++ + |++|+|+++++..++.+++ +
T Consensus 16 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~t~a~~~~~~~l~-~ 90 (362)
T 2c0r_A 16 PLEVLERAQAEFVDYQHTGMSIMEMSHRGA--VYEAVHNEAQARLLALLGN--PTGYKVLFIQGGASTQFAMIPMNFL-K 90 (362)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSH--HHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHHHHHHHHHHHHHC-C
T ss_pred CHHHHHHHHHHHhhhhhcCccccccCCCcH--HHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCchHHHHHHHHhcC-C
Confidence 899999998887542110 111211 2355777777777777775 443 5 5788999999999999998 8
Q ss_pred CCCEEEEc---------------cCcee---c-C--CCcc--cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 154 EGDGVVLL---------------FHTTW---K-R--QQIG--VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 154 ~gd~Vlvp---------------~g~~~---~-~--~~~~--~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
|||+|+++ .| ++ + . .+++ +|. ++++ +++ ++|+|++++|+||||.+++
T Consensus 91 ~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~-~~~~--i~~------~t~~v~~~~~~n~tG~~~~ 160 (362)
T 2c0r_A 91 EGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKL-QEIQ--LQD------NAAYLHLTSNETIEGAQFK 160 (362)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCG-GGCC--CCT------TEEEEEEESEETTTTEECS
T ss_pred CCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCH-HHcc--cCC------CcCEEEEeCCcCccceecc
Confidence 99998764 45 55 2 1 1233 466 5543 443 7999999999999999755
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
++++| +|+++++|++|+.+.. +.++ .+. .+++.|+||++ |++| +||+++
T Consensus 161 --~l~~i------~~~~vivD~a~~~~~~-----~~~~-----------~~~--d~~~~s~~K~~-g~~G--~G~l~~-- 209 (362)
T 2c0r_A 161 --AFPDT------GSVPLIGDMSSDILSR-----PFDL-----------NQF--GLVYAGAQKNL-GPSG--VTVVIV-- 209 (362)
T ss_dssp --SCCCC------TTSCEEEECTTTTTSS-----CCCG-----------GGC--SEEEEETTTTT-CCSS--CEEEEE--
T ss_pred --ccccc------CCCEEEEEChhhccCC-----ccch-----------hHC--cEEEEeccccc-cCcC--cEEEEE--
Confidence 24444 7999999999986432 1122 221 27778999999 8888 999995
Q ss_pred CChhHHHHHHhh------------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIYKI------------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDG 355 (463)
Q Consensus 291 ~~~~~~~~l~~~------------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 355 (463)
++++++.+.+. . ...++++.+.|.++..+++ .... ..+.++++++++++++.+.
T Consensus 210 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~----------~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (362)
T 2c0r_A 210 -REDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLK----------WIEERGGLEGVQQANRKKASLIYDA 278 (362)
T ss_dssp -EGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHH----------HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 77776655431 1 1235677788888887763 1122 2567888999999999999
Q ss_pred hhcCCCc-ccccC---CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-
Q 041151 356 FNSCRNV-VCNFT---EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL- 430 (463)
Q Consensus 356 L~~~pg~-~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~- 430 (463)
|++++++ .+..+ .++.++++ .++.+. +..+++ +.|.++||.+.+|..|. +++|||++
T Consensus 279 L~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~-~~L~~~gi~~~~g~~~~-----~~iRis~~~ 340 (362)
T 2c0r_A 279 IDQSGGFYRGCVDVDSRSDMNITF--RLASEE----------LEKEFV-KASEQEGFVGLKGHRSV-----GGLRASIYN 340 (362)
T ss_dssp HHTSTTSSEESSCGGGBCSSEEEE--ECSCHH----------HHHHHH-HHHHHTTEESCBCCTTT-----CSEEEECCT
T ss_pred HHHcCCccccCCChHHcCCcEEEE--EcCCcc----------hHHHHH-HHHHHCCCeeccCCCCC-----CEEEEECCC
Confidence 9998435 65321 23445564 344221 134444 45778899998887662 26999999
Q ss_pred -CCcCcHHHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~~~ 450 (463)
.++++++++++.|+++++++
T Consensus 341 ~~~~e~i~~l~~~l~~~~~~~ 361 (362)
T 2c0r_A 341 AVPYESCEALVQFMEHFKRSR 361 (362)
T ss_dssp TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 57899999999998887643
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=215.31 Aligned_cols=309 Identities=11% Similarity=0.052 Sum_probs=203.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
|+.+++++.+.+.+. ...+|+. .....++++++.+++.+.+| .+++.|++++| ++++..++.+++ ++|
T Consensus 36 ~~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g--~~~~~i~~~sG-t~a~~~a~~~~~-~~g 109 (405)
T 2vi8_A 36 SRAVMEAQGSVLTNK--YAEGYPGRRYYGGCEYVDIVEELARERAKQLFG--AEHANVQPHSG-AQANMAVYFTVL-EHG 109 (405)
T ss_dssp CHHHHHHHTSGGGGC--CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHC-CTT
T ss_pred CHHHHHHHHHHhhcc--cccCCCCccccccchHHHHHHHHHHHHHHHHhC--CCceEEEecCc-HHHHHHHHHHhc-CCC
Confidence 889999998877531 1112221 11233455423333333334 34445556777 999999999997 899
Q ss_pred CEEEEc---c------C-------c--ee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 156 DGVVLL---F------H-------T--TW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 156 d~Vlvp---~------g-------~--~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
|.|+++ + + . ++ + ...+.+|+ +.|++.+++. ++++|++ +|+|+ |...+
T Consensus 110 d~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~-~~~~~-~~~~~-- 179 (405)
T 2vi8_A 110 DTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDY-DDVREKARLH-----RPKLIVA-AAAAY-PRIID-- 179 (405)
T ss_dssp CEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCH-HHHHHHHHHH-----CCSEEEE-CCSSC-CSCCC--
T ss_pred CEEEEecccccchhcccchhhhccceeEEEecccccccCCcCH-HHHHHHHHhc-----CCeEEEE-eCCCC-CccCC--
Confidence 999997 1 1 1 22 2 14677999 9999999864 6888776 55554 44444
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+++|.++|+++|++||+||+|+......+.....+ .. ..++++|+||+++|++| ||+++ +
T Consensus 180 -l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~-----------~~--~di~~~s~sK~~~g~~g---G~~~~---~ 239 (405)
T 2vi8_A 180 -FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV-----------PY--AHFVTTTTHKTLRGPRG---GMILC---Q 239 (405)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-----------TT--CSEEEEESSSTTCCCSC---EEEEE---C
T ss_pred -HHHHHHHHHHcCCEEEEEccccccccccCcCCCcc-----------cc--CCEEEEeccccCCCCCC---eEEEE---c
Confidence 78889999999999999999985433111111111 11 12889999999933555 99994 7
Q ss_pred hhHHHHHHhhhh-hcccCChHHHHHH-HHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-C
Q 041151 293 PKTVDEIYKIAS-IALSPNVPAQIFM-GLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSCRNVVCNFT-E 368 (463)
Q Consensus 293 ~~~~~~l~~~~~-~~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-~ 368 (463)
+++++.+.+... ...+.+.+.+.++ .++++ ... .+.++++++++++++++.+.|+++ |+.+..| .
T Consensus 240 ~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 308 (405)
T 2vi8_A 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFG----------EALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGT 308 (405)
T ss_dssp HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHH----------HHHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSC
T ss_pred HHHHHHHHhhhcccccCCCCHHHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCC
Confidence 889888877653 3334434444444 34442 111 245678888999999999999998 8888765 4
Q ss_pred ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC----CCCCCCCcEEEEEecC------CcCcHHH
Q 041151 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG----FGQKEGIFHLRTTILP------AEEDMPA 438 (463)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~----f~~~~~~~~lRis~~~------~~e~i~~ 438 (463)
+++++|+.++.+ + .+... +...|.++||.+.+|.. ++. ...+++|++++. +++++++
T Consensus 309 ~~~~~~~~~~~~-~----------~~~~~-~~~~l~~~gi~v~~g~~~~~~~~~-~~~~~iRis~~~~~~~~~~~~~i~~ 375 (405)
T 2vi8_A 309 DNHLLLVDLRPQ-Q----------LTGKT-AEKVLDEVGITVNKNTIPYDPESP-FVTSGIRIGTAAVTTRGFGLEEMDE 375 (405)
T ss_dssp SSSEEEEECGGG-T----------CCHHH-HHHHHHHHTEECEEECCTTCSSCT-TTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred CceEEEEEccCC-C----------CCHHH-HHHHHHHcCceeccCcCccccCCC-CCCCceEEeeeeeeecCCCHHHHHH
Confidence 577888655311 1 12333 44567889999999873 222 133579999993 7899999
Q ss_pred HHHHHHHHHHHH
Q 041151 439 IMESFKKFNDEF 450 (463)
Q Consensus 439 ~~~~l~~~l~~~ 450 (463)
++++|++++++.
T Consensus 376 ~~~~l~~~~~~~ 387 (405)
T 2vi8_A 376 IAAIIGLVLKNV 387 (405)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHHhcc
Confidence 999999988654
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=221.09 Aligned_cols=295 Identities=12% Similarity=0.141 Sum_probs=200.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++ +.+++.+.+.. ..|.+..+..++|++++++++ .+++++++|+++++..++.++ + ++||+|++
T Consensus 19 ~~-~~~~~~~~~~~-----~~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~~~~~~~-~~gd~v~~ 83 (374)
T 3uwc_A 19 EP-YLNDLREFIKT-----ADFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDALAMSFKMLNI-GAGDEVIT 83 (374)
T ss_dssp HH-HHHHHHHHHHH-----TCCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred hH-HHHHHHHHHHc-----CCcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCCCEEEE
Confidence 55 77888777766 256677788999999999975 237888999999999999999 7 89999999
Q ss_pred c-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 161 L-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 161 p-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
+ .|.++ ....+.+|+ +.|++.+++ ++++|+ |+||||.+.+ +++|.++|++
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~v~---~~n~~G~~~~---~~~i~~~~~~ 150 (374)
T 3uwc_A 84 CANTFIASVGAIVQAGATPVLVDSENGYVIDP-EKIEAAITD------KTKAIM---PVHYTGNIAD---MPALAKIAKK 150 (374)
T ss_dssp ESSSCHHHHHHHHHTTCEEEEECBCTTSSBCG-GGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEEecCCCCCcCH-HHHHHhCCC------CceEEE---EeCCcCCcCC---HHHHHHHHHH
Confidence 7 56666 236788899 999998876 788877 9999999877 7778888999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+|+++|+|++|+.+..-+..+... . ..+++.|+| |++ +.+|. +|+++. .++++.+.+..
T Consensus 151 ~~~~li~D~~~~~g~~~~~~~~~~------------~---~d~~~~s~~~~K~l-~~~g~-~g~~~~--~~~~~~~~~~~ 211 (374)
T 3uwc_A 151 HNLHIVEDACQTILGRINDKFVGS------------W---GQFACFSLHPLKNL-NVWSD-AGVIIT--HSDEYAEKLRL 211 (374)
T ss_dssp TTCEEEEECTTCTTCEETTEETTS------------S---SSEEEEECSSSSSS-CCSSC-CEEEEE--SCHHHHHHHHH
T ss_pred cCCEEEEeCCCccCceeCCeeccc------------c---ccEEEEeCCCCCcC-Cccce-eEEEEe--CCHHHHHHHHH
Confidence 999999999998643211111111 0 136778866 998 65465 888886 46678787776
Q ss_pred hhhh-------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccc-
Q 041151 302 IASI-------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN-VVCNF- 366 (463)
Q Consensus 302 ~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg-~~~~~- 366 (463)
.... ....+.+...+....+ ...++..++.+++.+.+.+.|.++++ +.+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~--------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 277 (374)
T 3uwc_A 212 YRNHGLINRDVCVEYGINCRMDTIQAVIANRLM--------------NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVR 277 (374)
T ss_dssp HTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG--------------GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCC
T ss_pred HHhcCccccCccccccccCCCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccC
Confidence 5421 1111222222222221 12334566677788888999988866 66542
Q ss_pred CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----------C---------CCcEEE
Q 041151 367 TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-----------E---------GIFHLR 426 (463)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-----------~---------~~~~lR 426 (463)
+.++...|..+.+.. .+.+.+.+.|.++||.+.++...... . ....+|
T Consensus 278 ~~~~~~~~~~~~~~~------------~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 345 (374)
T 3uwc_A 278 REGVYHVFHIYVLRV------------KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVIT 345 (374)
T ss_dssp CTTEECCCSSEEEEE------------TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEE
T ss_pred CCCCceeeEEEEEEc------------CCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEE
Confidence 333333332122111 02333456677889999987621100 0 125799
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
|++. .+++|+++++++|++++++
T Consensus 346 l~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 346 LPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9988 7899999999999988864
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-25 Score=228.24 Aligned_cols=313 Identities=12% Similarity=0.043 Sum_probs=198.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
|+.+++++.+++... ....|+ .....+|++++++++. .+++|++|+|+++++..+++.+.. .+++.|++
T Consensus 71 ~p~v~~A~~~~~~~~--~~~~~~-~~~~~~l~~~la~~~~-------~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~ 140 (429)
T 3k28_A 71 NDRVVEALKAVAERG--TSFGAP-TEIENKLAKLVIERVP-------SIEIVRMVNSGTEATMSALRLARGYTGRNKILK 140 (429)
T ss_dssp CHHHHHHHHHHHHHC--SCCSSC-CHHHHHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHhhC--cCcCCC-CHHHHHHHHHHHHhCC-------CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEE
Confidence 889999999888763 222333 3445677777777652 478999999999999999988751 25677777
Q ss_pred c----cCcee---------------cCCCccc-------------ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTTW---------------KRQQIGV-------------LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~~---------------~~~~~~~-------------d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
. +|... +....-. |+ +.|++.++... .++++|+++.++|++|.+
T Consensus 141 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~~~~vi~ep~~~~~G~~ 216 (429)
T 3k28_A 141 FIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDL-ESVKYAFEQFG---DDIACVIVEPVAGNMGVV 216 (429)
T ss_dssp EETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCH-HHHHHHHHHHG---GGEEEEEECSSBCTTSCB
T ss_pred ECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCH-HHHHHHHHhCC---CCEEEEEEcCCCCCCCcc
Confidence 4 22111 1111111 78 99999988531 145555554445555554
Q ss_pred C-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 L-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 ~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
. +.+.+++|.++|++||++||+||+|.++ . .+. .... . .+ +- ...+.||||++ + +|+|+||++
T Consensus 217 ~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~-~g~-~~~~-~---~~----~~---~~di~t~sK~~-~-~G~~iG~~~ 280 (429)
T 3k28_A 217 PPQPGFLEGLREVTEQNGALLIFDEVMTGF-R-VAY-NCGQ-G---YY----GV---TPDLTCLGKVI-G-GGLPVGAYG 280 (429)
T ss_dssp CCCTTHHHHHHHHHHHHTCEEEEECTTTTT-T-SST-THHH-H---HH----TC---CCSEEEECGGG-G-TTSCCEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecccccc-c-cCc-chHH-H---Hh----CC---CCceehhhhhh-c-CCCCeEEEE
Confidence 4 6788999999999999999999999876 4 221 1111 1 11 11 11235799999 6 499999998
Q ss_pred ecCCChhHHHHHHhhh----hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----
Q 041151 288 MTNIPPKTVDEIYKIA----SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---- 359 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 359 (463)
+++++++.+.+.. ..+++.+.+.|.++.++++... ++++++++++++++.+.|+++
T Consensus 281 ---~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-------------~~~~~~~~~~~~~l~~~L~~~~~~~ 344 (429)
T 3k28_A 281 ---GKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-------------PESYVEFERKAEMLEAGLRKAAEKH 344 (429)
T ss_dssp ---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-------------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---EcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5888888876532 2367889999999988875211 234555666666666666543
Q ss_pred CCcccccCCceeEEeeeccCCh--hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHH
Q 041151 360 RNVVCNFTEGAMYSFPQIRLPP--KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMP 437 (463)
Q Consensus 360 pg~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~ 437 (463)
+.+....+.|.++.| .+..+. .+... ..........+...|.++||.+.|+. ..++|+++..++++++
T Consensus 345 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~r~~~~~t~e~i~ 414 (429)
T 3k28_A 345 GIPHHINRAGSMIGI-FFTDEPVINYDAA--KSSNLQFFAAYYREMVEQGVFLPPSQ-------FEGLFLSTVHSDADIE 414 (429)
T ss_dssp TCCCEEEEETTEEEE-ESSSSCCCSHHHH--TTSCHHHHHHHHHHHHHTTEECCSST-------TSCBCCCTTCCHHHHH
T ss_pred CCCEEEEeeccEEEE-EEecCCccccccc--ccccHHHHHHHHHHHHHCCeEEecCC-------CCCEEEECCCCHHHHH
Confidence 444444555555544 222110 00000 00000011233445667899999863 1257998888999999
Q ss_pred HHHHHHHHHHHHH
Q 041151 438 AIMESFKKFNDEF 450 (463)
Q Consensus 438 ~~~~~l~~~l~~~ 450 (463)
+++++|+++++++
T Consensus 415 ~~l~~l~~~l~~~ 427 (429)
T 3k28_A 415 ATIAAAEIAMSKL 427 (429)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-24 Score=215.12 Aligned_cols=312 Identities=11% Similarity=0.007 Sum_probs=197.8
Q ss_pred cHHHHHHHHHHhhhcC----CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTS----GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
|+.+++++.+.+.+.. .....|+.......+++...+++.+.+| +++++|++++| ++++..++.+++ ++||+
T Consensus 43 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~v~~~sG-s~a~~~a~~~~~-~~gd~ 118 (420)
T 3gbx_A 43 SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG--ADYANVQPHSG-SQANFAVYTALL-QPGDT 118 (420)
T ss_dssp CHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT--CSEEECCCSSH-HHHHHHHHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC--CCCceeEecCc-HHHHHHHHHHhc-CCCCE
Confidence 8899999988774411 0112233333334444444355554445 45667777777 789999999997 89999
Q ss_pred EEEc---cC------cee-------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 158 VVLL---FH------TTW-------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 158 Vlvp---~g------~~~-------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
|+++ ++ ..+ .+..+.+|+ +.|++++++. ++++|++++|+||+ ..+ ++
T Consensus 119 v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~~~~--~~~---l~ 187 (420)
T 3gbx_A 119 VLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDY-DEMAKLAKEH-----KPKMIIGGFSAYSG--VVD---WA 187 (420)
T ss_dssp EEEEEEC------------CHHHHSEEEEEEECTTCSCCH-HHHHHHHHHH-----CCSEEEECCTTCCS--CCC---HH
T ss_pred EEecchhhcceeccchhhhhcccceeEEeccCCccCCcCH-HHHHHHHHhc-----CCeEEEEecCccCC--ccC---HH
Confidence 9997 21 110 234567999 9999999874 69999999999984 444 78
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh--
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP-- 293 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~-- 293 (463)
+|.++|++||++||+||+|....+..+.....+ .. ..|++.|+||++ + |.+.||++. ++
T Consensus 188 ~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~-----------~~--~di~~~s~sK~~-~--g~~gg~~~~---~~~~ 248 (420)
T 3gbx_A 188 KMREIADSIGAYLFVDMAHVAGLIAAGVYPNPV-----------PH--AHVVTTTTHKTL-A--GPRGGLILA---KGGD 248 (420)
T ss_dssp HHHHHHHHTTCEEEEECTTTHHHHHTTSSCCST-----------TT--SSEEEEESSGGG-C--SCSCEEEEE---SSCC
T ss_pred HHHHHHHHcCCEEEEECCcchhceecccCCccc-----------cc--CCEEEeecccCC-C--CCCceEEEE---cCCc
Confidence 899999999999999999864433122111111 11 238899999998 3 666799984 65
Q ss_pred -hHHHHHHhhhh-hcc-cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-Cc
Q 041151 294 -KTVDEIYKIAS-IAL-SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT-EG 369 (463)
Q Consensus 294 -~~~~~l~~~~~-~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-~g 369 (463)
++.+.+..... ... +++...+.++..++.. ....+.+++++++.++++++.+.|.+. |+.+..+ .+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~---------~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~ 318 (420)
T 3gbx_A 249 EELYKKLNSAVFPSAQGGPLMHVIAGKAVALKE---------AMEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTE 318 (420)
T ss_dssp HHHHHHHHHHHC----CCCCHHHHHHHHHHHHH---------TTSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS
T ss_pred HHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHH---------HHhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCC
Confidence 77777765443 222 3334444443333210 011334567888899999999999885 8887653 45
Q ss_pred eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC---CCCCcEEEEEec------CCcCcHHHHH
Q 041151 370 AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ---KEGIFHLRTTIL------PAEEDMPAIM 440 (463)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~---~~~~~~lRis~~------~~~e~i~~~~ 440 (463)
++++|+.+..+ + .+...+...|+++||.+.|+..++. +-+...+||++. .+++++++++
T Consensus 319 ~~~~~~~~~~~-~-----------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~ 386 (420)
T 3gbx_A 319 NHLFLLDLVDK-N-----------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELA 386 (420)
T ss_dssp SSEEEEECGGG-T-----------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHH
T ss_pred CeEEEEEcCCC-C-----------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHH
Confidence 66777554311 1 1345566778889999998322211 112235999997 2368899999
Q ss_pred HHHHHHHHH
Q 041151 441 ESFKKFNDE 449 (463)
Q Consensus 441 ~~l~~~l~~ 449 (463)
++|++++++
T Consensus 387 ~~l~~~l~~ 395 (420)
T 3gbx_A 387 GWMCDVLDN 395 (420)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 998887754
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=225.11 Aligned_cols=313 Identities=12% Similarity=0.059 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++... ..|+...+..+++.++++++.+..+.. ..++|++|+|+++++..+++.... ..++.|++
T Consensus 79 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~ 153 (451)
T 3oks_A 79 APKVVEAVRSQVGDF----THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSALFNSGSEAVENAVKIARSHTHKPAVVA 153 (451)
T ss_dssp CHHHHHHHHHHHTTC----SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHHhc----ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEE
Confidence 789999999888762 346555566788888888887765422 357999999999999999987752 13467776
Q ss_pred c----cCce-------------------------e-cCC-C--c---cc--------ChHHHHHHHHHHHHhcCCceeEE
Q 041151 161 L----FHTT-------------------------W-KRQ-Q--I---GV--------LIINDLQQSVAQARSKGITVRAM 196 (463)
Q Consensus 161 p----~g~~-------------------------~-~~~-~--~---~~--------d~~~~l~~~l~~~~~~~~~~~~i 196 (463)
. +|.. . +.. . . +. ++ +.+++.+.... .++..++
T Consensus 154 ~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~l~~~~--~~~~~aa 230 (451)
T 3oks_A 154 FDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA-KRAITVIDKQI--GADNLAA 230 (451)
T ss_dssp ETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH-HHHHHHHHHHT--CGGGEEE
T ss_pred EcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH-HHHHHHHHhhc--CCCCEEE
Confidence 4 2111 0 100 0 0 11 23 55555555321 1134566
Q ss_pred EEECCCCCCc--cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcc
Q 041151 197 VIINPGNPTG--QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKG 274 (463)
Q Consensus 197 ~l~~p~NPtG--~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 274 (463)
+++.|+|++| ...+.+.+++|.++|++||++||+||+|..+... +. ..... .+ +- ...+.||||+
T Consensus 231 vi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~-g~-~~~~~----~~----~~---~pdi~t~sK~ 297 (451)
T 3oks_A 231 VVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFART-GA-MFACE----HE----GI---DPDLIVTAKG 297 (451)
T ss_dssp EEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SSGGG----GG----TC---CCSEEEECGG
T ss_pred EEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcc-cc-chhhh----hc----CC---CCCeeeehhh
Confidence 6777877776 3446677999999999999999999999986542 22 11111 11 11 1123389999
Q ss_pred cCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 275 YWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353 (463)
Q Consensus 275 ~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (463)
+ +. |+|+||++ +++++++.+..... .+++.+++.|.++.++|+ .... +.+.++++++.+++.
T Consensus 298 l-~~-G~~iG~v~---~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~ 360 (451)
T 3oks_A 298 I-AG-GLPLSAVT---GRAEIMDSPHVSGLGGTYGGNPIACAAALATIE-----------TIES-EGLVARAQQIEKIMK 360 (451)
T ss_dssp G-GT-TSSCEEEE---EEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHH
T ss_pred h-hC-CcceEEEE---ECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHH-----------HHhh-hhHHHHHHHHHHHHH
Confidence 9 64 99999998 58888888765543 578889999999988874 1111 134444555555555
Q ss_pred HHhh----cCCCcccccCCceeEEeeeccC-----ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcE
Q 041151 354 DGFN----SCRNVVCNFTEGAMYSFPQIRL-----PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFH 424 (463)
Q Consensus 354 ~~L~----~~pg~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~ 424 (463)
+.|. .+|.+....+.|. ++|+.+.- |... ....+...|.++||.+.|+..|+ ++
T Consensus 361 ~~L~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~Gv~v~~~~~~~-----~~ 423 (451)
T 3oks_A 361 DRLGRLQAEDDRIGDVRGRGA-MIAMELVKAGTTEPDAD-----------LTKALCAGAHAAGVIVLSCGTYG-----NV 423 (451)
T ss_dssp HHHHHHHHHCTTEEEEEEETT-EEEEEEBSTTSCCBCHH-----------HHHHHHHHHHHTTEECEEECTTS-----CE
T ss_pred HHHHHHHhhCCCeEEEEEeeE-EEEEEEecCccCCCCHH-----------HHHHHHHHHHhCCcEEecCCCCC-----CE
Confidence 5544 4455544444444 55544421 1110 22334455667899999976654 27
Q ss_pred EEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 425 LRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 425 lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
+||+++ .+++++++++++|++++++
T Consensus 424 iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 424 VRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999877 6889999999999988753
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=224.26 Aligned_cols=314 Identities=11% Similarity=0.072 Sum_probs=203.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC----CC--
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG----EG-- 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~----~g-- 155 (463)
|+.+++++.+++... ..|....+..+.+.++++++.+.++ ...++|++|+|+++++..+++++. . +|
T Consensus 62 ~p~v~~A~~~~~~~~----~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~al~~~~-~~~~~~G~~ 134 (448)
T 3dod_A 62 KKELDDAIKKQLGKI----AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEAMEIALKMAF-QYWKNIGKP 134 (448)
T ss_dssp CHHHHHHHHHHHTTC----SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc----cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHHHHHHHHH-HHHHhhCCC
Confidence 789999999888762 2344445666888888888877754 345799999999999999999986 4 44
Q ss_pred --CEEEEc----cCcee--------------------------cCCCcc-----------cChHHHHHHHHHHHHhcCCc
Q 041151 156 --DGVVLL----FHTTW--------------------------KRQQIG-----------VLIINDLQQSVAQARSKGIT 192 (463)
Q Consensus 156 --d~Vlvp----~g~~~--------------------------~~~~~~-----------~d~~~~l~~~l~~~~~~~~~ 192 (463)
+.|+++ +|... ..+.+. .|+ ++|++.++... .+
T Consensus 135 ~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~ 210 (448)
T 3dod_A 135 EKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCL-RELAQLLEEHH---EE 210 (448)
T ss_dssp TCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHH-HHHHHHHHHHG---GG
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHH-HHHHHHHHhCC---CC
Confidence 888886 22111 011111 137 88999887311 15
Q ss_pred eeEEEEECCC-CCCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 193 VRAMVIINPG-NPTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 193 ~~~i~l~~p~-NPtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
+++|+++.++ |++| .+++.+.+++|.++|++||++||+||+|..+... +... ... .++. .. .+.|
T Consensus 211 ~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~-g~~~-a~~----~~~~--~~-----di~t 277 (448)
T 3dod_A 211 IAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRT-GKMF-ACE----HENV--QP-----DLMA 277 (448)
T ss_dssp EEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSSS-GGG----GGTC--CC-----SEEE
T ss_pred EEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcc-cchh-hhh----hcCC--CC-----CEEE
Confidence 6676666656 7887 5568888999999999999999999999986542 2211 111 1110 11 2347
Q ss_pred CCcccCCCCC-ceeEEEEecCCChhHHHHHHh-------hh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 271 VSKGYWGECG-QRGGYFEMTNIPPKTVDEIYK-------IA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 271 ~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~-------~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
|||++ + +| +|+||++ +++++++.+.+ .. ..+++.+++.|.++.++|+ ..+. +.+
T Consensus 278 ~sK~l-~-~G~~~ig~v~---~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~ 340 (448)
T 3dod_A 278 AGKGI-T-GGYLPIAVTF---ATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA-----------LFES-ENI 340 (448)
T ss_dssp ECGGG-G-TTSSCCEEEE---EEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTH
T ss_pred ecccc-c-CCcCceEEEE---ECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHH-----------HHhc-ccH
Confidence 89999 5 49 5999999 58899888875 33 2467888999999888874 1111 223
Q ss_pred HHHHHHHHHHHHHHh---hcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC----hHHHHHHHHHhcCeEeeCCC
Q 041151 342 LESLRRRARMMTDGF---NSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP----DVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L---~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gI~v~pg~ 414 (463)
.++++++.+.+.+.| ..+|.+....+.| .++|+.+.-... +...... ...++ ..|.++||.+.|+.
T Consensus 341 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~l~~~Gv~~~~~~ 413 (448)
T 3dod_A 341 VEQVAEKSKKLHFLLQDLHALPHVGDIRQLG-FMCGAELVRSKE-----TKEPYPADRRIGYKVS-LKMRELGMLTRPLG 413 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTT-----TTBCCCGGGCHHHHHH-HHHHHTTEECCEET
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEeee-EEEEEEEccCcc-----cccccchhhHHHHHHH-HHHHHCCcEEeccC
Confidence 444444444444444 4444444334444 455644431110 0000000 13444 44567799998861
Q ss_pred CCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
+++||+++ .+++++++++++|+++++++.
T Consensus 414 --------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 414 --------DVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp --------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 37999665 888999999999999998764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=222.70 Aligned_cols=296 Identities=11% Similarity=0.039 Sum_probs=192.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE-cCCcHHHHHHHHHHHhcCCC-CEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL-TDGASKGVMQTLNCVIRGEG-DGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~G~~~al~~~~~~l~~~~g-d~Vl 159 (463)
|+.+++++.+.........+.|+. ..++.+++.+.+.+.+|.+ ++++|++ |+|+++++..++.+++ ++| +.|.
T Consensus 52 ~~~v~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~~~~l~-~~gv~~v~ 126 (398)
T 2fyf_A 52 RLEQLQTLTTTAAALFGTSHRQAP---VKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAAAFGLI-DKRSLHLT 126 (398)
T ss_dssp CHHHHHGGGTTTTTTTTSCTTSHH---HHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHHHHHTC-SSCEEEEE
T ss_pred CHHHHHHHhhcCCCccCcCcCCHH---HHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHHHHHhc-CCCeEEEe
Confidence 888888876531110001122221 1234444555554445554 3579998 9999999999999997 888 5542
Q ss_pred Ec------------c--Ccee---cC-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 160 LL------------F--HTTW---KR-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 160 vp------------~--g~~~---~~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
.+ . |.++ +. +++..+. + +++ ++++|++++|+||||.+++.+++.++
T Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~g~~~~~-~-----i~~------~~~~v~~~~~~nptG~~~~~~~i~~~---- 190 (398)
T 2fyf_A 127 YGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEP-Q-----TDP------SVDVIAWAHNETSTGVAVAVRRPEGS---- 190 (398)
T ss_dssp CSHHHHHHHHHHHHCTTSCCCEEEECCTTCCCCC-C-----CCT------TCSEEEEESEETTTTEECCCCCCTTC----
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEecCCCCCCCc-c-----ccC------CCCEEEEeCcCCCcceecchHHhhhh----
Confidence 22 2 4444 22 2222222 1 222 79999999999999999997666554
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+|++||+|++|+.+.. ...+ .+ ..+++.|+||++ |++| ++||+++ ++++++.+.+
T Consensus 191 --~~~~vivD~a~~~~~~-----~~~~-----------~~--~di~~~s~sK~~-~~~g-g~g~l~~---~~~~~~~l~~ 245 (398)
T 2fyf_A 191 --DDALVVIDATSGAGGL-----PVDI-----------AE--TDAYYFAPQKNF-ASDG-GLWLAIM---SPAALSRIEA 245 (398)
T ss_dssp --C-CEEEEECTTTTTTS-----CCCG-----------GG--CSEEEECTTSTT-CSCS-SEEEEEE---CHHHHHHHHH
T ss_pred --cCCeEEEEeccccCCc-----ccCc-----------cc--CcEEEEecCccc-CCCC-ceEEEEE---CHHHHHHhhc
Confidence 8999999999986432 1122 11 237889999999 7775 5999984 8888887754
Q ss_pred hh---------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Q 041151 302 IA---------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFN 357 (463)
Q Consensus 302 ~~---------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~ 357 (463)
.. . ...+++...+.++..+++ ...++ .++++++++++++++.+.|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~----------~~~~~g~~~~~~~~~~~~~~~l~~~L~ 315 (398)
T 2fyf_A 246 IAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQID----------WLVGNGGLDWAVKRTADSSQRLYSWAQ 315 (398)
T ss_dssp HHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 123455556666666652 12223 56678889999999999999
Q ss_pred cCCCccccc--C--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C
Q 041151 358 SCRNVVCNF--T--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P 431 (463)
Q Consensus 358 ~~pg~~~~~--~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~ 431 (463)
++||+.+.. | .+++++|+.+ |.+. +..++.. .|.++||.+++|. .. .+.+++|||++ .
T Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~--~~~~----------~~~~l~~-~L~~~gI~v~~g~--~~-~~~~~iRis~~~~~ 379 (398)
T 2fyf_A 316 ERPYTTPFVTDPGLRSQVVGTIDF--VDDV----------DAGTVAK-ILRANGIVDTEPY--RK-LGRNQLRVAMFPAV 379 (398)
T ss_dssp HSTTEEESCCSGGGBCSSEEEEEE--CTTS----------CHHHHHH-HHHHTTCBCCSCC--TT-TCSSEEEEECCTTS
T ss_pred HcCCceeccCChhhcCCcEEEEEC--CCCC----------CHHHHHH-HHHHCCcEEecCc--cc-CCCCEEEEEecCCC
Confidence 988888763 4 3555778555 3221 2345444 4556699999873 22 12458999999 6
Q ss_pred CcCcHHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~~ 449 (463)
+++++++++++|++++++
T Consensus 380 t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 380 EPDDVSALTECVDWVVER 397 (398)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999988754
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=223.87 Aligned_cols=300 Identities=10% Similarity=-0.025 Sum_probs=205.9
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcE--EEcCCcHHHHHHHHHHHhcCCC--------CEEEEc--------
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI--FLTDGASKGVMQTLNCVIRGEG--------DGVVLL-------- 161 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~~~l~~~~g--------d~Vlvp-------- 161 (463)
...|....+...+++++++++.+.+|.+.+++++ ++|+|+++++..++.++. ++| |+|+++
T Consensus 128 ~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~~~~~~~~ 206 (514)
T 3mad_A 128 PLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPVSAHAAFD 206 (514)
T ss_dssp TTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEETTSCTHHH
T ss_pred CcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeCccchHHH
Confidence 3445444566788999999998888877666788 999999999999999997 676 899997
Q ss_pred -----cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 -----FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 -----~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|.++ ....+.+|+ +.|++++++ ++++|++++|+||||.+.+ +++|.++|++||++||+|+
T Consensus 207 ~~~~~~G~~v~~v~~~~~~~~d~-~~Le~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~i~livDe 276 (514)
T 3mad_A 207 KAAQYFGIKLVRTPLDADYRADV-AAMREAITP------NTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDA 276 (514)
T ss_dssp HHHHHHTCEEEEECBCTTSCBCH-HHHHHHCCT------TEEEEEEETTCTTTCCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHcCCeeEEeeeCCCCCCCH-HHHHHHhcc------CCEEEEEeCCCCCCccccC---HHHHHHHHHHhCCeEEEec
Confidence 56655 344678999 999999987 8999999999999999988 6788888999999999999
Q ss_pred cccccccC----CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-----
Q 041151 233 VYQQNIYQ----DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA----- 303 (463)
Q Consensus 233 ay~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~----- 303 (463)
+|..+.+. .+.+...+.. ...+..+++.|++|+++ ++.++||+++ .++.+........
T Consensus 277 a~~~~~~~~~~~~g~~~~~~~~---------~~~g~d~~~~s~~K~l~--~~~~~g~~~~--~~~~~~~~~~~~~~~~~~ 343 (514)
T 3mad_A 277 CLGGFILPWAERLGYPVPPFDF---------RLEGVTSVSADTHKYGY--GAKGTSVILY--RRPDLLHYQYFIAADWPG 343 (514)
T ss_dssp TTTTTTHHHHHHTTCCCCCCST---------TSTTCCEEEECTTTTTC--CCSSCEEEEE--SSHHHHTTTCEEESSCTT
T ss_pred ccccccchhHHhcCCCCCcccc---------cCCCCcEEEECchhccC--CCCCeEEEEE--eCHHHhccccccccccCC
Confidence 99876431 0110111110 11224588899999863 6788999986 3443322111000
Q ss_pred ----hh--cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeec
Q 041151 304 ----SI--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQI 377 (463)
Q Consensus 304 ----~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~ 377 (463)
.. ..+.+.....++.+++. .+ .....+++.++..++++++.+.|+++||+.+..+..+ ++|+..
T Consensus 344 ~~~~~~~~~gs~~~~~~~a~~aal~-------~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~ 413 (514)
T 3mad_A 344 GLYFSPTFAGSRPGALSATAWAAML-------SL--GEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVAS 413 (514)
T ss_dssp CSEEESSSCSSCCHHHHHHHHHHHH-------HH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEEC
T ss_pred CcccCCccCCCCchHHHHHHHHHHH-------HH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeC
Confidence 00 11222222222222221 00 1223456788888999999999999889988766655 444322
Q ss_pred cCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 378 RLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+. .+..++ .+.|.++||.+ +|..|. .++|+++. .+++++++++++|+++++++.++
T Consensus 414 --~~-----------~~~~~l-~~~L~~~Gi~v-~g~~~~-----~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 414 --DE-----------LNIYQV-MEEMAGRGWRL-NGLHRP-----PAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAH 472 (514)
T ss_dssp --SS-----------SCHHHH-HHHHHTTTCBC-EEETTT-----TEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHC
T ss_pred --CC-----------CCHHHH-HHHHHhcCCEe-ccCCCC-----CeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 21 123344 45566779988 544432 36999998 45699999999999999887754
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-25 Score=223.32 Aligned_cols=304 Identities=10% Similarity=0.049 Sum_probs=201.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--------G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~ 153 (463)
++.+++++.+.+.........|. .....++++.+++++ | .++|++++|+++++..+++++.. +
T Consensus 94 ~p~v~~Ai~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~----g----~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~ 164 (439)
T 2oat_A 94 HPKIVNALKSQVDKLTLTSRAFY-NNVLGEYEEYITKLF----N----YHKVLPMNTGVEAGETACKLARKWGYTVKGIQ 164 (439)
T ss_dssp CHHHHHHHHHHHTTCSCCCTTSE-ESSHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHhcCcccCccC-CHHHHHHHHHHHHhc----C----CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCC
Confidence 89999999988876311111232 223456666666665 2 57999999999999999998641 2
Q ss_pred CC-CEEEEc---c-Ccee-----cC------------CC-c---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 154 EG-DGVVLL---F-HTTW-----KR------------QQ-I---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 154 ~g-d~Vlvp---~-g~~~-----~~------------~~-~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
+| +.|+++ + |... .. .+ . -.|+ +.|++.+++. ++++|+++..+|++|.
T Consensus 165 ~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~-~~le~~l~~~-----~~~~vi~ep~~~~~G~ 238 (439)
T 2oat_A 165 KYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDL-PALERALQDP-----NVAAFMVEPIQGEAGV 238 (439)
T ss_dssp TTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCH-HHHHHHTTST-----TEEEEEECSSBTTTTS
T ss_pred CCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCH-HHHHHHhCCC-----CEEEEEEECCCCCCCC
Confidence 56 788875 2 2111 00 00 0 1378 9999988521 6777665544677896
Q ss_pred -CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEE
Q 041151 208 -CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGY 285 (463)
Q Consensus 208 -~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~ 285 (463)
.++.+.+++|.++|++||+++|+||+|..+... +.. ..+. .++. .. . + .||||++ + +| +|+||
T Consensus 239 ~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~-g~~-~~~~----~~~~--~~--D-i--~t~sK~l-~-~G~~~~G~ 303 (439)
T 2oat_A 239 VVPDPGYLMGVRELCTRHQVLFIADEIQTGLART-GRW-LAVD----YENV--RP--D-I--VLLGKAL-S-GGLYPVSA 303 (439)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSS-SGGG----GGTC--CC--S-E--EEECGGG-G-TTSSCCEE
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCCccC-Ccc-hhHH----HhCC--CC--c-E--EEecccc-c-CCCCCeEE
Confidence 568899999999999999999999999765432 211 1111 1110 11 1 2 3999999 5 58 99999
Q ss_pred EEecCCChhHHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 041151 286 FEMTNIPPKTVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~ 364 (463)
+++ ++++++.+.... ..+++.+++.+.++.++++ ...+ +.+.++++++++++.+.|+++ ++.+
T Consensus 304 v~~---~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~-~~~~~~~~~~~~~l~~~L~~l-~~~~ 367 (439)
T 2oat_A 304 VLC---DDDIMLTIKPGEHGSTYGGNPLGCRVAIAALE-----------VLEE-ENLAENADKLGIILRNELMKL-PSDV 367 (439)
T ss_dssp EEE---CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHTTS-CTTT
T ss_pred EEE---CHHHHhccCCCCcccCCCcCHHHHHHHHHHHH-----------HHhh-hhHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 994 888877775533 2467778888888877763 2221 246778888999999999887 4443
Q ss_pred c--cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHH
Q 041151 365 N--FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIM 440 (463)
Q Consensus 365 ~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~ 440 (463)
. .+..+.++|+.+.-..+ .+..+++. .|.++||.+.|+ +.+++|++++ .+++++++++
T Consensus 368 ~~~~~~~g~~~~v~l~~~~~----------~~~~~l~~-~l~~~Gv~v~~~-------~~~~iRi~~~~~~t~e~i~~~l 429 (439)
T 2oat_A 368 VTAVRGKGLLNAIVIKETKD----------WDAWKVCL-RLRDNGLLAKPT-------HGDIIRFAPPLVIKEDELRESI 429 (439)
T ss_dssp EEEEEEETTEEEEEECCCSS----------CCHHHHHH-HHHHTTEECCBS-------SSSEEEECCCTTCCHHHHHHHH
T ss_pred cEEEEeeeeEEEEEEecCcc----------HHHHHHHH-HHHHCCeEEecC-------CCCEEEEECccCCCHHHHHHHH
Confidence 1 12234566655531100 12344444 455689999983 2348999877 7899999999
Q ss_pred HHHHHHHHH
Q 041151 441 ESFKKFNDE 449 (463)
Q Consensus 441 ~~l~~~l~~ 449 (463)
++|++++++
T Consensus 430 ~~l~~~l~~ 438 (439)
T 2oat_A 430 EIINKTILS 438 (439)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988753
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=218.02 Aligned_cols=295 Identities=12% Similarity=0.115 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
|+.+++++.+.+.+. .|.+..+..++|++++++++ .+++++|+|+++++..++.++ + ++||+|++
T Consensus 19 ~~~~~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~~~~~~~~-~~gd~Vl~ 84 (393)
T 1mdo_A 19 GAEELAAVKTVLDSG-----WITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGI-GEGDEVIT 84 (393)
T ss_dssp CHHHHHHHHHHHHHT-----CCSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhcC-----CcCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHHHHHHcCC-CCCCEEEe
Confidence 778888888888762 23445678899999999985 248999999999999999999 7 89999999
Q ss_pred c-------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ + .+++.+|+ +.|++.+++ ++++|+++ ||||.+.+ +++|.++|+
T Consensus 85 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~-~~l~~~l~~------~~~~v~~~---~~~G~~~~---~~~i~~l~~ 151 (393)
T 1mdo_A 85 PSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTP-EHIEAAITP------QTKAIIPV---HYAGAPAD---LDAIYALGE 151 (393)
T ss_dssp ESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCH-HHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHH
T ss_pred CCCccHhHHHHHHHCCCEEEEEeccCCcCCCCH-HHHHHhcCC------CceEEEEe---CCCCCcCC---HHHHHHHHH
Confidence 7 56666 2 23467999 999999876 78998876 48999876 778888899
Q ss_pred hCCeEEEeccccccc-ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHH
Q 041151 223 QENLVLLGDEVYQQN-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 223 ~~~~~vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
++|++||+|++|+.+ .+ .+. .+ .. +++++.|+| |++ +|.|+||++. .++++++.+
T Consensus 152 ~~~~~li~D~a~~~g~~~-~~~---~~-----------~~--~d~~~~S~~k~K~l---~~~~~g~~~~--~~~~~~~~l 209 (393)
T 1mdo_A 152 RYGIPVIEDAAHATGTSY-KGR---HI-----------GA--RGTAIFSFHAIKNI---TCAEGGIVVT--DNPQFADKL 209 (393)
T ss_dssp HHTCCBCEECTTCTTCEE-TTE---ET-----------TS--SSEEEEECCTTSSS---CSSSCEEEEE--SCHHHHHHH
T ss_pred HcCCeEEEECccccCCeE-CCe---ec-----------CC--CCeEEEeCCCCCcc---ccccceEEEe--CCHHHHHHH
Confidence 999999999999964 33 211 11 11 348889999 655 5569999995 247888888
Q ss_pred Hhhhhhccc-------------------------CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 300 YKIASIALS-------------------------PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 300 ~~~~~~~~~-------------------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
......... .+.+...++... ++.+++..++.+++++++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~--------------l~~~~~~~~~~~~~~~~l~~ 275 (393)
T 1mdo_A 210 RSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQ--------------LQKLDALNARRAAIAAQYHQ 275 (393)
T ss_dssp HHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHH--------------HHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 765431111 122222221111 22234455566677888899
Q ss_pred HhhcCCCccccc-C-----CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC-----------
Q 041151 355 GFNSCRNVVCNF-T-----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG----------- 417 (463)
Q Consensus 355 ~L~~~pg~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~----------- 417 (463)
.|.+++ +.+.. + .+++++|+.+ +... .+ .+..+ +.+.|.++||.+.+|..+.
T Consensus 276 ~L~~~~-~~~~~~~~~~~~~~~~~~~v~~--~~~~------~~-~~~~~-l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ 344 (393)
T 1mdo_A 276 AMADLP-FQPLSLPSWEHIHAWHLFIIRV--DEAR------CG-ITRDA-LMASLKTKGIGTGLHFRAAHTQKYYRERFP 344 (393)
T ss_dssp HHHTSS-CEECCCCSSCEECCCSCEEEEC--CHHH------HS-SCHHH-HHHHHHHTTBCCBCCCCCGGGSHHHHHHST
T ss_pred HHhcCC-cccccCCCCCCCceeEEEEEEe--cccc------cc-cCHHH-HHHHHHhCCCCcccccCccccChhhhccCC
Confidence 998874 66542 2 3456677544 3200 00 02334 4455677899999987541
Q ss_pred ---CCC----CCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 418 ---QKE----GIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 418 ---~~~----~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+. ....+||++. .+++|+++++++|+++++..
T Consensus 345 ~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 345 TLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp TCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred ccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 100 1347999998 78999999999998876554
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=219.26 Aligned_cols=294 Identities=12% Similarity=0.064 Sum_probs=197.6
Q ss_pred cHHHHHHHHHHhhhcCCCCC---ccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-c---
Q 041151 82 PADAIARAKHYLSLTSGGLG---AYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-R--- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~---~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~--- 152 (463)
|+.+++++.+.+........ .|+. .....++++.++++++ +++++|++|+|+++++..++.+++ .
T Consensus 41 ~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g------~~~~~v~~~~g~t~al~~al~~~~~~~~~ 114 (416)
T 1qz9_A 41 PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG------ARDGEVVVTDTTSINLFKVLSAALRVQAT 114 (416)
T ss_dssp BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT------CCTTSEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcC------CCcccEEEeCChhHHHHHHHHhhcccccc
Confidence 77889999888765211110 1111 1233556666666653 567899999999999998888763 1
Q ss_pred -CCCCE-EEEc---c----------------CceecCCCcccC-hHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 153 -GEGDG-VVLL---F----------------HTTWKRQQIGVL-IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 153 -~~gd~-Vlvp---~----------------g~~~~~~~~~~d-~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
++||. |+++ + |.++. .++ + +.|++++++ ++++|++++|+||||.+++
T Consensus 115 ~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~----~v~~~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~ 183 (416)
T 1qz9_A 115 RSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR----LVDSP-EELPQAIDQ------DTAVVMLTHVNYKTGYMHD 183 (416)
T ss_dssp HSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE----EESSG-GGHHHHCST------TEEEEEEESBCTTTCBBCC
T ss_pred cCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEE----EeCcH-HHHHHHhCC------CceEEEEeccccCcccccC
Confidence 58886 4553 1 44430 011 5 888888876 7999999999999999998
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEec
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMT 289 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~ 289 (463)
+++|.++|+++|++||+|++|+... . ..++..+ + ..+++.|+||++. +|.++ ||+++
T Consensus 184 ---l~~i~~l~~~~~~~li~D~a~~~g~----~-~~~~~~~--------~---~d~~~~s~~K~l~--~g~~~~g~l~~- 241 (416)
T 1qz9_A 184 ---MQALTALSHECGALAIWDLAHSAGA----V-PVDLHQA--------G---ADYAIGCTYKYLN--GGPGSQAFVWV- 241 (416)
T ss_dssp ---HHHHHHHHHHHTCEEEEECTTTTTT----S-CCCHHHH--------T---CSEEEECSSSTTC--CCTTCCCEEEE-
T ss_pred ---HHHHHHHHHHcCCEEEEEccccccC----c-CCChhhc--------C---CCEEEecCcccCC--CCCCCeEEEEE-
Confidence 6788889999999999999998421 1 1233222 2 2378899999873 57777 99995
Q ss_pred CCChhHHHHHHhhh-----------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHH
Q 041151 290 NIPPKTVDEIYKIA-----------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILES 344 (463)
Q Consensus 290 ~~~~~~~~~l~~~~-----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 344 (463)
++++++.+.... . ...+.+...+.++.++++ ... ...++++++
T Consensus 242 --~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~----------~~~~~~~~~~~~~ 309 (416)
T 1qz9_A 242 --SPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLD----------VFAQTDMASLRRK 309 (416)
T ss_dssp --CTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHH----------HHTTSCHHHHHHH
T ss_pred --CHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHH----------HHHhcCHHHHHHH
Confidence 777766554321 1 122345556665555542 111 124567788
Q ss_pred HHHHHHHHHHHhhcC-C--CcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 345 LRRRARMMTDGFNSC-R--NVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 345 ~~~~~~~l~~~L~~~-p--g~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
++++++++.+.|++. | |+.+..+. .+.++|+.+ +. ..++. +.|.++||.+...
T Consensus 310 ~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-------------~~~l~-~~l~~~gi~~~~~---- 369 (416)
T 1qz9_A 310 SLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH--PE-------------GYAVI-QALIDRGVIGDYR---- 369 (416)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC--TT-------------HHHHH-HHHHTTTEECEEE----
T ss_pred HHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEec--CC-------------HHHHH-HHHHhCCcEeccC----
Confidence 899999999999885 6 88877664 244566443 31 23444 4566789987531
Q ss_pred CCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 418 ~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~ 449 (463)
+.+++||+++ .+++++++++++|++++++
T Consensus 370 ---~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 370 ---EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp ---TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 2348999996 5899999999999999875
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=223.87 Aligned_cols=319 Identities=15% Similarity=0.093 Sum_probs=212.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~ 154 (463)
|+.+++++.+++... .+.|+ ..+..+++.++++++.+.++ ...++|++++|+++++..+++.+. . +
T Consensus 72 ~p~v~~A~~~~l~~~---~~~~~-~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~~Aik~a~-~~~~~~g~~ 144 (476)
T 3i5t_A 72 RREIVDAMAHQAMVL---PYASP-WYMATSPAARLAEKIATLTP--GDLNRIFFTTGGSTAVDSALRFSE-FYNNVLGRP 144 (476)
T ss_dssp CHHHHHHHHHHHHHC---CCCCT-TTCBCHHHHHHHHHHHTTSS--TTCCEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc---cCccc-CccCCHHHHHHHHHHHhcCC--CCcCEEEEeCchHHHHHHHHHHHH-HHHHhcCCC
Confidence 789999999988762 12222 24567889999999987654 345799999999999999999885 3 3
Q ss_pred -CCEEEEc----cCcee-------------------------c-CCC---cccC--------hHHHHHHHHHHHHhcCCc
Q 041151 155 -GDGVVLL----FHTTW-------------------------K-RQQ---IGVL--------IINDLQQSVAQARSKGIT 192 (463)
Q Consensus 155 -gd~Vlvp----~g~~~-------------------------~-~~~---~~~d--------~~~~l~~~l~~~~~~~~~ 192 (463)
++.|++. +|... + ... ++.| + +.|++.++.... .+
T Consensus 145 ~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~le~~i~~~~~--~~ 221 (476)
T 3i5t_A 145 QKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLV-QEFEDRIESLGP--DT 221 (476)
T ss_dssp TCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHH-HHHHHHHHHHCG--GG
T ss_pred CCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHH-HHHHHHHHhcCC--CC
Confidence 4577764 22111 0 000 0112 6 889988874211 15
Q ss_pred eeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC
Q 041151 193 VRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV 271 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 271 (463)
+++|+++.++|++|. +++.+.+++|.++|++||+++|+||+|..+... +. ..... ..+++ .. . +.++
T Consensus 222 ~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~-G~-~~~~~---~~~~v--~p--d---i~t~ 289 (476)
T 3i5t_A 222 IAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC-GE-WFASE---KVFGV--VP--D---IITF 289 (476)
T ss_dssp EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SCHHH---HTTCC--CC--S---EEEE
T ss_pred EEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc-cC-ceeee---cccCC--Cc--c---hhhh
Confidence 778877777888885 889999999999999999999999999986442 22 11111 02211 12 1 2368
Q ss_pred CcccCCCCC-ceeEEEEecCCChhHHHHHHhh-------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 041151 272 SKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI-------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342 (463)
Q Consensus 272 SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (463)
||++ + .| +|+|+++ +++++++.+... . ..+++.+++++.++.++|+ ..++ +.+.
T Consensus 290 sK~l-~-~G~~plg~v~---~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~-----------~~~~-~~~~ 352 (476)
T 3i5t_A 290 AKGV-T-SGYVPLGGLA---ISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIE-----------LMER-EGIV 352 (476)
T ss_dssp CGGG-G-TTSSCCEEEE---ECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHH
T ss_pred hhhh-c-CCCcCeEEEE---ECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHH-----------HHHh-HHHH
Confidence 9999 5 48 9999999 589999988753 2 2467889999999988873 2221 3456
Q ss_pred HHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCC---hHHHHHHHHHhcCeEeeCCCCC
Q 041151 343 ESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP---DVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 343 ~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~gI~v~pg~~f 416 (463)
++++++.+++.+.|+++ |.+....+.|.|+ ++.+.-.... ...+.+ ....+...|.++||.+.|.
T Consensus 353 ~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~-~i~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--- 423 (476)
T 3i5t_A 353 DQAREMADYFAAALASLRDLPGVAETRSVGLVG-CVQCLLDPTR-----ADGTAEDKAFTLKIDERCFELGLIVRPL--- 423 (476)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEE-EEEECCC----------CCHHHHHHHHHHHHHHHHTTEECEEE---
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEEecCcee-EEEEecCccc-----cccccchhHHHHHHHHHHHHCCCEEEec---
Confidence 66777777777777654 4455555666554 4333311100 000000 1222344556779999983
Q ss_pred CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 417 ~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+ +++||++. .+++++++++++|+++++++.++
T Consensus 424 g-----~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 424 G-----DLCVISPPLIISRAQIDEMVAIMRQAITEVSAA 457 (476)
T ss_dssp T-----TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-----CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 48999955 89999999999999999987664
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=223.59 Aligned_cols=320 Identities=15% Similarity=0.097 Sum_probs=207.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------- 153 (463)
++.+++++.+++... ...|....+..+.+.++++.+.+..+ ...++|++++|+++++..+++.+. .
T Consensus 73 ~p~v~~A~~~~~~~~---~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGseA~~~aik~a~-~~~~~~g~~ 146 (472)
T 3hmu_A 73 RDELAEVAARQMREL---PYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSEANDTNIRMVR-TYWQNKGQP 146 (472)
T ss_dssp CHHHHHHHHHHHHHC---SCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc---cccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHHHHHHHHH-HHHHhcCCC
Confidence 789999999988763 22344333445677777777766543 356799999999999999999886 4
Q ss_pred CCCEEEEc----cCcee------------------------c-CCCcc----cC--------hHHHHHHHHHHHHhcCCc
Q 041151 154 EGDGVVLL----FHTTW------------------------K-RQQIG----VL--------IINDLQQSVAQARSKGIT 192 (463)
Q Consensus 154 ~gd~Vlvp----~g~~~------------------------~-~~~~~----~d--------~~~~l~~~l~~~~~~~~~ 192 (463)
+++.|++. +|... + ...+. .| + +.|++.++.... .+
T Consensus 147 ~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~-~~le~~i~~~~~--~~ 223 (472)
T 3hmu_A 147 EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARA-RELEEAILELGE--NR 223 (472)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHHHHH-HHHHHHHHHHCG--GG
T ss_pred CCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHHHHH-HHHHHHHHhcCC--CC
Confidence 45677775 22111 0 01011 22 6 888888874211 15
Q ss_pred eeEEEEECCCCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC
Q 041151 193 VRAMVIINPGNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV 271 (463)
Q Consensus 193 ~~~i~l~~p~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 271 (463)
+.+|+++.++|++|.+. +.+.+++|.++|++||+++|+||+|..+... +. .... . .+++ .. . +.+|
T Consensus 224 ~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~-G~-~~a~-~---~~~v--~p--d---i~t~ 290 (472)
T 3hmu_A 224 VAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRT-GN-WFGT-Q---TMGI--RP--H---IMTI 290 (472)
T ss_dssp EEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SCHH-H---HHTC--CC--S---EEEE
T ss_pred EEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCccc-Cc-cchh-H---HhCC--CC--c---eeee
Confidence 66666656677777655 8888999999999999999999999986442 21 1112 1 1211 12 1 2368
Q ss_pred CcccCCCCCceeEEEEecCCChhHHHHHHhh--h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHH-H
Q 041151 272 SKGYWGECGQRGGYFEMTNIPPKTVDEIYKI--A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLR-R 347 (463)
Q Consensus 272 SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 347 (463)
||++ +..|+|+||++ +++++++.+... . ..+++.++++|.++.++|+ ..++ +.+.++++ +
T Consensus 291 sK~l-~gg~~plG~v~---~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~-----------~~~~-~~~~~~~~~~ 354 (472)
T 3hmu_A 291 AKGL-SSGYAPIGGSI---VCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLR-----------ILEE-ENILDHVRNV 354 (472)
T ss_dssp CGGG-TTTSSCCEEEE---EEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHT
T ss_pred chhh-hcCCcceEEEE---ECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHH-----------HHHH-hHHHHHHHHH
Confidence 9998 64559999999 589999988321 2 2467889999999988873 1211 23455566 6
Q ss_pred HHHHHHHHhhc---CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC----hHHHHHHHHHhcCeEeeCCCCCCCCC
Q 041151 348 RARMMTDGFNS---CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP----DVFYCLRLLEATGISTVPGSGFGQKE 420 (463)
Q Consensus 348 ~~~~l~~~L~~---~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gI~v~pg~~f~~~~ 420 (463)
+.+++.+.|++ .|++..+.+.|.++.+ .+.-... +...+.. ....+...|.++||.++|+.
T Consensus 355 ~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i-~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g------ 422 (472)
T 3hmu_A 355 AAPYLKEKWEALTDHPLVGEAKIVGMMASI-ALTPNKA-----SRAKFASEPGTIGYICRERCFANNLIMRHVG------ 422 (472)
T ss_dssp HHHHHHHHHHGGGGSTTEEEEEEETTEEEE-EECSCGG-----GTCCBSSCTTHHHHHHHHHHHHTTBCCEEET------
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecCceEEE-EEecCcc-----ccccccchhHHHHHHHHHHHHHCCcEEEecC------
Confidence 66666666654 3555555666665543 3321110 0000000 12233455667899999852
Q ss_pred CCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 421 GIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 421 ~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+++||++. .+++++++++++|+++++++.++
T Consensus 423 --~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~~~ 455 (472)
T 3hmu_A 423 --DRMIISPPLVITPAEIDEMFVRIRKSLDEAQAE 455 (472)
T ss_dssp --TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 48999955 89999999999999999886543
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-24 Score=214.98 Aligned_cols=274 Identities=12% Similarity=0.108 Sum_probs=182.4
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Cc
Q 041151 102 AYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HT 164 (463)
Q Consensus 102 ~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~ 164 (463)
.|+. .+..+||++++++++ .. +.|++++| ++++..++. ++ ++||+|+++ + |.
T Consensus 63 r~~~-p~~~~l~~~la~~~g------~~-~~i~~~sG-~~ai~~~~~-l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 131 (403)
T 3cog_A 63 RSGN-PTRNCLEKAVAALDG------AK-YCLAFASG-LAATVTITH-LL-KAGDQIICMDDVYGGTNRYFRQVASEFGL 131 (403)
T ss_dssp ---C-HHHHHHHHHHHHHHT------CS-EEEEESCH-HHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred CCCC-chHHHHHHHHHHHhC------CC-cEEEECCH-HHHHHHHHH-Hh-CCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence 4443 356799999999985 22 67777777 589999999 87 899999997 2 22
Q ss_pred ee-cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC-eEEEecccccccccCCC
Q 041151 165 TW-KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN-LVLLGDEVYQQNIYQDE 242 (463)
Q Consensus 165 ~~-~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~-~~vi~Deay~~~~~~~~ 242 (463)
++ ..+. -|+ +.|++++++ ++++|++++|+||||.+++ +++|+++|+++| +++|+|++|..+.+.
T Consensus 132 ~v~~v~~--~d~-~~l~~~i~~------~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~-- 197 (403)
T 3cog_A 132 KISFVDC--SKI-KLLEAAITP------ETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ-- 197 (403)
T ss_dssp EEEEECT--TSH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC--
T ss_pred EEEEECC--CCH-HHHHHhcCc------CCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC--
Confidence 33 1110 178 999998876 8999999999999999997 788888999999 999999999986541
Q ss_pred CCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHh
Q 041151 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLM 320 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~ 320 (463)
. ++ + .+..|+++|+||++ +.+| +|+||+++ .++++++.+..... .+...+.+.+.++...
T Consensus 198 ~---~~-----------~-~~~div~~S~sK~~-~g~~~~~~G~v~~--~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~ 259 (403)
T 3cog_A 198 R---PL-----------A-LGADISMYSATKYM-NGHSDVVMGLVSV--NCESLHNRLRFLQNSLGAVPSPIDCYLCNRG 259 (403)
T ss_dssp C---TT-----------T-TTCSEEEEETTTTT-TCSSCCCCEEEEE--CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred C---cc-----------c-cCCeEEEEcChhhc-cCCCCCeEEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhh
Confidence 1 11 1 12458999999999 5555 57999995 35788888887665 4555678888777777
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhcCCCcccccCC----ceeEEeeeccCChh
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDG--------------FNSCRNVVCNFTE----GAMYSFPQIRLPPK 382 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------L~~~pg~~~~~~~----g~~~~~~~~~~~~~ 382 (463)
++. .. ...++..++...+.+. |.++||+.+..++ |+++.| .++ .
T Consensus 260 l~~-------l~-------~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~l~--~- 321 (403)
T 3cog_A 260 LKT-------LH-------VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTF-YIK--G- 321 (403)
T ss_dssp HTT-------HH-------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEE-EES--S-
T ss_pred hhH-------HH-------HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEE-Eec--C-
Confidence 642 11 1112222333233333 4444566655443 777776 232 1
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeC---CC----------CCCC----------CCCCcEEEEEecCCcCcHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVP---GS----------GFGQ----------KEGIFHLRTTILPAEEDMPAI 439 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p---g~----------~f~~----------~~~~~~lRis~~~~~e~i~~~ 439 (463)
..+.+..++.+.||.++. |+ .+.. .-..+++|||++. ++.++.
T Consensus 322 ------------~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~d~ 387 (403)
T 3cog_A 322 ------------TLQHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL--EDEEDL 387 (403)
T ss_dssp ------------CHHHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHH
T ss_pred ------------CHHHHHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--CCHHHH
Confidence 113355677888886543 21 1110 0114689999996 566777
Q ss_pred HHHHHHHHHHH
Q 041151 440 MESFKKFNDEF 450 (463)
Q Consensus 440 ~~~l~~~l~~~ 450 (463)
++.|.+++++.
T Consensus 388 i~~l~~al~~~ 398 (403)
T 3cog_A 388 LEDLDQALKAA 398 (403)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88887777654
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-24 Score=217.36 Aligned_cols=311 Identities=13% Similarity=0.116 Sum_probs=204.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC-CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS-RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG------- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~-~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------- 153 (463)
|+.+++++.+.+.... |... .+..+++.++++.+.+..+ .++++|++|+|+++++..+++++. .
T Consensus 68 ~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~~~al~~~~-~~~~~~g~ 139 (449)
T 3a8u_X 68 RKEIQEAVAKQLSTLD-----YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECALTAVKMVR-AYWRLKGQ 139 (449)
T ss_dssp CHHHHHHHHHHTTTCS-----CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTC
T ss_pred CHHHHHHHHHHHHhCC-----CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHHHHHHHHHH-HHHHhcCC
Confidence 7889999988887621 2221 3344566777777765533 467899999999999999999875 4
Q ss_pred -CCCEEEEc---c-C------------------------cee-c-CCCc-----ccC--------hHHHHHHHHHHHHhc
Q 041151 154 -EGDGVVLL---F-H------------------------TTW-K-RQQI-----GVL--------IINDLQQSVAQARSK 189 (463)
Q Consensus 154 -~gd~Vlvp---~-g------------------------~~~-~-~~~~-----~~d--------~~~~l~~~l~~~~~~ 189 (463)
++|.|+++ + | +.. + ...+ ++| + +.|++.+++...
T Consensus 140 ~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~-~~le~~l~~~~~- 217 (449)
T 3a8u_X 140 ATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALA-DELLKLIELHDA- 217 (449)
T ss_dssp TTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHH-HHHHHHHHHHCG-
T ss_pred CCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHH-HHHHHHHHhcCC-
Confidence 67888885 1 1 111 1 1111 246 8 999999875200
Q ss_pred CCceeEEEEECC-CCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEE
Q 041151 190 GITVRAMVIINP-GNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVS 267 (463)
Q Consensus 190 ~~~~~~i~l~~p-~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (463)
.++++|+ ++| +||||. ..+.+.+++|.++|++||++||+||+|..+... +. ...+... +. .. . +
T Consensus 218 -~~~~~vi-~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~-g~-~~~~~~~--~~----~~--d-i- 283 (449)
T 3a8u_X 218 -SNIAAVF-VEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRT-GS-MFGADSF--GV----TP--D-L- 283 (449)
T ss_dssp -GGEEEEE-ECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSHHHHH--TC----CC--S-E-
T ss_pred -CCEEEEE-EcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCcccc-Cc-chhhhhc--CC----CC--C-E-
Confidence 1566654 555 577996 667899999999999999999999999865431 21 1122111 11 12 2 2
Q ss_pred EecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhh---------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 268 FHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI---------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 268 ~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~---------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
.|+||++ + +| +|+||+++ ++++++.+... . ..+++.+.+.+.++.++|+ ...
T Consensus 284 -~s~sK~l-~-~G~~~~G~~~~---~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~-----------~~~ 346 (449)
T 3a8u_X 284 -MCIAKQV-T-NGAIPMGAVIA---STEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALC-----------LLQ 346 (449)
T ss_dssp -EEECGGG-G-TTSSCCEEEEE---EHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHH-----------HHH
T ss_pred -EEEcccc-c-CCCCceEEEEE---CHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHH-----------HHH
Confidence 2899999 5 47 99999984 78888888764 1 2356678888888877763 222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccc--cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNSCRNVVCN--FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~~pg~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
+ +.+.++++++++++.+.|++++++... .+..++++|+.+.-..... ..+..++... |.++||.+.|+.
T Consensus 347 ~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~-------~~~~~~~~~~-l~~~Gv~v~~~g 417 (449)
T 3a8u_X 347 K-ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDA-------IVRPFEAGMA-LWKAGFYVRFGG 417 (449)
T ss_dssp H-TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBS-------SHHHHHHHHH-HHHHTEECEEET
T ss_pred h-cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccc-------cccHHHHHHH-HHHCCcEEecCC
Confidence 1 246677888888888888775323221 1234567776554211000 0001244444 556799999961
Q ss_pred CCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+++||++. .+++++++++++|+++++++
T Consensus 418 --------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 418 --------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp --------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred --------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 37999965 88999999999999988653
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=218.47 Aligned_cols=308 Identities=13% Similarity=0.088 Sum_probs=204.1
Q ss_pred ccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccC-CCCCCHHHHHHH
Q 041151 38 KKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYS-DSRGIPGVRKEV 116 (463)
Q Consensus 38 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~-~~~g~~~lr~~i 116 (463)
.++++++.|.|.. ++.+.+++.+.+.. ..|+ +..+..++|+++
T Consensus 22 ~~~~~l~~~~p~~-------------------------------~~~~~~a~~~~~~~-----~~~~~~~~~~~~l~~~l 65 (391)
T 3dr4_A 22 SDLPRISVAAPRL-------------------------------DGNERDYVLECMDT-----TWISSVGRFIVEFEKAF 65 (391)
T ss_dssp ------CCCCCCC-------------------------------CSSHHHHHHHHHHH-----TCCSSCSHHHHHHHHHH
T ss_pred CCCceeccCCCCC-------------------------------CHHHHHHHHHHHHc-----CCccCCChHHHHHHHHH
Confidence 4588999998885 66788888887776 2455 566889999999
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEEc-------------cCcee-----cCCCcccChHH
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVLL-------------FHTTW-----KRQQIGVLIIN 177 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlvp-------------~g~~~-----~~~~~~~d~~~ 177 (463)
+++++ .+++++++|+++++..++.++ + ++||+|+++ .|.++ ..+.+.+|+ +
T Consensus 66 a~~~~--------~~~~i~~~~gt~al~~~l~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~ 135 (391)
T 3dr4_A 66 ADYCG--------VKHAIACNNGTTALHLALVAMGI-GPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDA-A 135 (391)
T ss_dssp HHHHT--------CSEEEEESSHHHHHHHHHHHHTC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCG-G
T ss_pred HHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCH-H
Confidence 99985 237888888899999999999 7 899999997 56665 225678999 9
Q ss_pred HHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCC
Q 041151 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257 (463)
Q Consensus 178 ~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 257 (463)
.|++.+++ ++++|+ |+||||...+ +++|.++|+++|++||+|++|+.+....+.+... +
T Consensus 136 ~l~~~~~~------~~~~v~---~~n~tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~-------~-- 194 (391)
T 3dr4_A 136 KLEALITP------RTKAIM---PVHLYGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS-------L-- 194 (391)
T ss_dssp GSGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS-------S--
T ss_pred HHHHhcCC------CceEEE---EECCCCChhh---HHHHHHHHHHcCCEEEEECcccccceECCeeecc-------c--
Confidence 99998876 788887 6789999877 7778888999999999999998643211111111 0
Q ss_pred CCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHHhhhhhccc-------------CChHHHHHHHHhcC
Q 041151 258 PFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALS-------------PNVPAQIFMGLMVN 322 (463)
Q Consensus 258 ~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~~~q~~~~~~l~ 322 (463)
. .+.+.||| |++ +|.++||++. .++++.+.+......... .......++....
T Consensus 195 --~----di~~~S~s~~K~l---~~g~gg~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~- 262 (391)
T 3dr4_A 195 --G----DCATFSFFGNAII---TTGEGGMITT--NDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLA- 262 (391)
T ss_dssp --S----SEEEEECBTTSSS---CCBSCEEEEE--SCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHH-
T ss_pred --C----CEEEEECCCCCcC---CcCCeEEEEE--CCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHH-
Confidence 1 16777877 766 4567999986 567788887765531111 1112222222221
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC------Ccee-EEeeeccCChhhHHHHhhcCCCCh
Q 041151 323 PLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT------EGAM-YSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~------~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
....+++..++.+++.+++.+.|.++ |+.+..+ ..++ .+++.++-..+. +
T Consensus 263 -----------~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~ 319 (391)
T 3dr4_A 263 -----------QLERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVFWMYTVRLGEGLST-----------T 319 (391)
T ss_dssp -----------HHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCCSSEEEEECSSCSS-----------C
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCcceeEEEEEEECCccch-----------h
Confidence 12234456667778888899999888 7776544 1222 234333210011 2
Q ss_pred HHHHHHHHHhcCeEeeCCCCC---CC----------C----CCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGF---GQ----------K----EGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f---~~----------~----~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
.+.+...|.++||.++++... .. + -....+||++. .+++|+++++++|++++
T Consensus 320 ~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 320 RDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 333455677789999987521 00 0 01347999998 79999999999998654
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=209.87 Aligned_cols=270 Identities=16% Similarity=0.127 Sum_probs=188.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cC
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KR 168 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~ 168 (463)
.+..+++++++++++ .+ +.|++++| ++++..++.+++ ++||.|+++ + |.++ .-
T Consensus 52 ~~~~~l~~~la~~~~------~~-~~i~~~sG-t~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 122 (386)
T 1cs1_A 52 PTRDVVQRALAELEG------GA-GAVLTNTG-MSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFV 122 (386)
T ss_dssp HHHHHHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEE
T ss_pred ccHHHHHHHHHHHhC------CC-cEEEeCCH-HHHHHHHHHHHh-CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEe
Confidence 356789999999985 23 67777777 899999999997 899999997 1 2222 11
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
. ..|+ +.|++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+||+|..+.+. . ++
T Consensus 123 ~--~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~--~---~~ 185 (386)
T 1cs1_A 123 D--QGDE-QALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ--N---PL 185 (386)
T ss_dssp C--TTCH-HHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--C---GG
T ss_pred C--CCCH-HHHHHhhcc------CCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC--C---cc
Confidence 1 1278 999999986 8999999999999999997 778888999999999999999986541 1 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
. + ++++++.|+||++ +.+|.|+ ||+++ .++++++.+..... .+.+.+.+.+.++...++
T Consensus 186 -~----~-------~~di~~~s~sK~~-~~~~~~~~G~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~---- 246 (386)
T 1cs1_A 186 -A----L-------GADLVLHSCTKYL-NGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---- 246 (386)
T ss_dssp -G----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE--SSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT----
T ss_pred -c----c-------CceEEEEcCcccc-cCCCCceeEEEEe--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc----
Confidence 1 1 1358999999999 7889987 99985 23478888877665 345567777776655543
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc--------------ccc----CCceeEEeeeccCChhhHHHHh
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV--------------CNF----TEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~--------------~~~----~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
+.....+.+.++++.+.+.|++++++. +.. ..++++.+ .+. .
T Consensus 247 ----------~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~--~------- 306 (386)
T 1cs1_A 247 ----------TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSF-ELD--G------- 306 (386)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EES--S-------
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEE-EEC--C-------
Confidence 122234456667777777776654332 111 12555544 232 1
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCC----------------CC--------CCCcEEEEEecCCcCcHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFG----------------QK--------EGIFHLRTTILPAEEDMPAIMESFK 444 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~----------------~~--------~~~~~lRis~~~~~e~i~~~~~~l~ 444 (463)
..+.+...|.+.||.+++.+ || .+ ...+++|||++. ++.++.+++|.
T Consensus 307 ------~~~~~~~~l~~~gi~~~~~~-~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~--~~~~~~i~~l~ 377 (386)
T 1cs1_A 307 ------DEQTLRRFLGGLSLFTLAES-LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLE 377 (386)
T ss_dssp ------CHHHHHHHHHTCSSSEEBSC-CCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHH
T ss_pred ------CHHHHHHHHHhCCcceEccc-CCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc--CCHHHHHHHHH
Confidence 12335567888999887432 22 00 113689999996 67888888888
Q ss_pred HHHHHH
Q 041151 445 KFNDEF 450 (463)
Q Consensus 445 ~~l~~~ 450 (463)
++++++
T Consensus 378 ~al~~~ 383 (386)
T 1cs1_A 378 NGFRAA 383 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887665
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-24 Score=214.56 Aligned_cols=308 Identities=13% Similarity=0.162 Sum_probs=203.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
|+.+++++.+.+... ....|++..|..++++++++.+.+.+|.+ ++++++|+++++..++.++ + ++||+|++
T Consensus 15 ~~~~~~a~~~~~~~~--~~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~-~~gd~Vl~ 87 (418)
T 2c81_A 15 SDRTRRKIEEVFQSN--RWAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGI-GEGDEVIV 87 (418)
T ss_dssp CHHHHHHHHHHHHHT--CCSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhcC--CccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCC-CCcCEEEE
Confidence 789999999888762 33348877786666666666665555543 4566666789999999999 7 89999999
Q ss_pred c-------------cCcee---cC--CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW---KR--QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~---~~--~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ +. +++.+|+ +.|++.+++ ++++|+++ ||||...+ +++|.++|+
T Consensus 88 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~---~~~G~~~~---~~~i~~~~~ 154 (418)
T 2c81_A 88 PSLTWIATATAVLNVNALPVFVDVEADTYCIDP-QLIKSAITD------KTKAIIPV---HLFGSMAN---MDEINEIAQ 154 (418)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCH-HHHGGGCCT------TEEEECCB---CCTTCCCC---HHHHHHHHH
T ss_pred CCCccHhHHHHHHHcCCEEEEEecCCCCCCcCH-HHHHHhhCC------CCeEEEEe---CCcCCccc---HHHHHHHHH
Confidence 7 56666 22 3678999 999998876 78988864 58998755 788888999
Q ss_pred hCCeEEEecccccccc-cCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 223 QENLVLLGDEVYQQNI-YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
++|++||+|++|+.+. + ++.+..+ + . .+.+.|| ||.+ +. | |+||++. .++++++.+
T Consensus 155 ~~~~~li~D~a~~~~~~~-~~~~~~~-------~----~----~~~~~s~s~~K~~-~~-g-~~g~~~~--~~~~l~~~~ 213 (418)
T 2c81_A 155 EHNLFVIEDCAQSHGSVW-NNQRAGT-------I----G----DIGAFSCQQGKVL-TA-G-EGGIIVT--KNPRLFELI 213 (418)
T ss_dssp HTTCEEEEECTTCTTCEE-TTEETTS-------S----S----SEEEEECCTTSSS-CS-S-SCEEEEE--SCHHHHHHH
T ss_pred HCCCEEEEECcccccCcc-CCEeccc-------c----c----ceEEEeccCCccc-CC-C-CeEEEEE--CCHHHHHHH
Confidence 9999999999999875 4 2211111 1 1 1677888 9999 76 7 9999995 357888888
Q ss_pred Hhhhhhc-------------cc--C---C--------hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 300 YKIASIA-------------LS--P---N--------VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353 (463)
Q Consensus 300 ~~~~~~~-------------~~--~---~--------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (463)
....... +. . . ...+.++.. ..++.+++..++.+++++++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~-------------~~l~~~~~~~~~~~~~~~~l~ 280 (418)
T 2c81_A 214 QQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILL-------------DQLQELDDKNAIREKNAMFLN 280 (418)
T ss_dssp HHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHH-------------HHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 7654311 00 0 0 011111111 112234456666777788899
Q ss_pred HHhhcCCCcccc-cCCc-eeEEe--eeccCChhhHHHHhhcCCCChHHHHHHHHHhc-CeE---eeCCCCCCC-------
Q 041151 354 DGFNSCRNVVCN-FTEG-AMYSF--PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEAT-GIS---TVPGSGFGQ------- 418 (463)
Q Consensus 354 ~~L~~~pg~~~~-~~~g-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-gI~---v~pg~~f~~------- 418 (463)
+.|.++||+.+. .+++ +...| +.+.++... ..+ .+..++... |.++ ||. +.++.....
T Consensus 281 ~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~l~~~-L~~~~gI~~~~v~~~~~p~~~~~~~~~ 353 (418)
T 2c81_A 281 DALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVK-----FGG-LNADQFCEI-LREKLNMGTFYLHPPYLPVHKNPLFCP 353 (418)
T ss_dssp HHHTTSTTEEECCCCTTEEECCCSEEEEEECGGG-----TTT-CCHHHHHHH-HHHHHTCCTTTEECCCCCGGGCTTCCG
T ss_pred HHhccCCCcccCCCCCCCcccccEEEEEEEcccc-----ccc-cCHHHHHHH-HHHcCCCCcccccccccccccCchhcc
Confidence 999988888876 4565 33322 112333200 000 124455444 5555 999 888752210
Q ss_pred -------------------CC-------CCcEEEEEec--C-CcCcHHHHHHHHHHHHHHH
Q 041151 419 -------------------KE-------GIFHLRTTIL--P-AEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 419 -------------------~~-------~~~~lRis~~--~-~~e~i~~~~~~l~~~l~~~ 450 (463)
.. ..+.+||++. . +++|++.+++.|+++++++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 354 WTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp GGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 00 0248999998 7 8999999999999887653
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=220.64 Aligned_cols=307 Identities=15% Similarity=0.139 Sum_probs=210.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~~g 155 (463)
.+.+++++.+.+. ..+.|.+ .+|..++++++++++.+.+|.+. .+++++|+++++..++.++. .++|
T Consensus 79 ~p~v~~~~~~~~~----~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~---~~~~~~ggt~a~~~al~~~~~~~~~~G 151 (474)
T 1wyu_B 79 NPKLHEEAARLFA----DLHPYQDPRTAQGALRLMWELGEYLKALTGMDA---ITLEPAAGAHGELTGILIIRAYHEDRG 151 (474)
T ss_dssp CCHHHHHHHHTTS----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE---EECCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH----hcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc---eeecChHHHHHHHHHHHHHHHHHHhcC
Confidence 4456666665422 2344553 56778999999999988878653 47788999999988665541 1588
Q ss_pred C-----EEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 156 D-----GVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 156 d-----~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
| +|+++ .|.++ ...++.+|+ ++|++++++ ++++|++++| ||||.+. ++
T Consensus 152 d~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~-~~L~~~i~~------~t~~v~~~~p-n~~G~~~--~~ 221 (474)
T 1wyu_B 152 EGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDL-EALKRELGP------HVAALMLTNP-NTLGLFE--RR 221 (474)
T ss_dssp CTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCH-HHHHHHCST------TEEEEEECSS-CTTSCCC--TT
T ss_pred CccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCH-HHHHHhhCC------CceEEEEECC-CCCcccC--CC
Confidence 7 89997 56665 335677899 999999976 7999999998 6899873 35
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC-C---ceeEEEEec
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC-G---QRGGYFEMT 289 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~-G---~R~G~~~~~ 289 (463)
+++|+++|+++|+++|+|++|..+.+ +. .+.... + ..+++.|+||+| +.| | .|+||+++
T Consensus 222 l~~i~~l~~~~g~~li~Dea~~~~~~-g~---~~~~~~--------g---~di~~~s~~K~~-~~p~g~gG~~~G~~~~- 284 (474)
T 1wyu_B 222 ILEISRLCKEAGVQLYYDGANLNAIM-GW---ARPGDM--------G---FDVVHLNLHKTF-TVPHGGGGPGSGPVGV- 284 (474)
T ss_dssp HHHHHHHHHHHTCEEEEEGGGGGGTT-TT---CCHHHH--------T---CSEEECCTTTTT-CCCCTTSCCCCCCEEE-
T ss_pred HHHHHHHHHHcCCEEEEeCchhhhhc-cC---CCcccC--------C---CcEEEEeCcccc-ccCCCCCCCCeEEEEE-
Confidence 89999999999999999999987654 21 122221 2 247889999999 666 4 59999995
Q ss_pred CCChhHHHHHHh-hh------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 041151 290 NIPPKTVDEIYK-IA------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRA 349 (463)
Q Consensus 290 ~~~~~~~~~l~~-~~------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (463)
++++++.+.. .. . ...+.+.+.+.++..++.. ...+.++++.+++.+++
T Consensus 285 --~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~---------~g~~~l~~~~~~~~~~~ 353 (474)
T 1wyu_B 285 --KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRT---------LGLEGLKKAAALAVLNA 353 (474)
T ss_dssp --CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 7777665541 10 0 1123455666666665420 01233556788899999
Q ss_pred HHHHHHhhcCCCcccccCCceeE-EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 350 RMMTDGFNSCRNVVCNFTEGAMY-SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 350 ~~l~~~L~~~pg~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
+++.+.|++. |+.+..+...+. +|+++ +.+ .+..++... |.++||.+ |+..|+. ...+++||+
T Consensus 354 ~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--~~~----------~~~~~l~~~-L~~~Gi~~-~~~~~~~-~~~~~lRis 417 (474)
T 1wyu_B 354 RYLKELLKEK-GYRVPYDGPSMHEFVAQP--PEG----------FRALDLAKG-LLELGFHP-PTVYFPL-IVKEALMVE 417 (474)
T ss_dssp HHHHHHHHHT-TCBCSSCSSCCSCEEEBC--STT----------CCHHHHHHH-HHHTTCCC-CEESCST-TSTTCEEEC
T ss_pred HHHHHHHhhc-CcEecCCCCcceEEEEEc--CCC----------CCHHHHHHH-HHHCCccc-ccccccc-ccCCEEEEE
Confidence 9999999987 887744332331 45444 221 124455544 55669975 6666642 124589999
Q ss_pred ec--CCcCcHHHHHHHHHHHHHH
Q 041151 429 IL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
++ .+.+++++++++|++++++
T Consensus 418 ~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 418 PTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTS
T ss_pred eecCCCHHHHHHHHHHHHHHHHh
Confidence 99 4889999999999998765
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-24 Score=218.65 Aligned_cols=313 Identities=10% Similarity=-0.031 Sum_probs=215.5
Q ss_pred cHHHHHHHHHHhhhcC-CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-----CC
Q 041151 82 PADAIARAKHYLSLTS-GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-----EG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-----~g 155 (463)
++.+.+.+.+++.... .....|....|..++++++++++.+.+|.+.+++++++|+|+++++..++.++. + +|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~-~~~~~~~g 155 (497)
T 3mc6_A 77 GDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAK-MYALHHRG 155 (497)
T ss_dssp CHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHH-HHHHHHSC
T ss_pred chHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHH-HHHHhcCC
Confidence 4667777777666531 133445555677899999999999998987778899999999999999999986 4 56
Q ss_pred ---CEEEEc-------------cCcee----cCC-CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 156 ---DGVVLL-------------FHTTW----KRQ-QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 156 ---d~Vlvp-------------~g~~~----~~~-~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
++|+++ .|.++ ... .+.+|+ +.|++++++ ++++|++++|+||||.+.+ +
T Consensus 156 ~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~p~nptG~~~~---l 225 (497)
T 3mc6_A 156 ITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDL-GKVKKFINK------NTVLLVGSAPNFPHGIADD---I 225 (497)
T ss_dssp CSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCT-TTTGGGCCS------SEEEEEEETTCTTTCCCCS---C
T ss_pred CCCceEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCH-HHHHHHHhh------CCEEEEEECCCCCCCcCCC---H
Confidence 889997 56665 223 678999 999999886 7999999999999999977 6
Q ss_pred HHHHHHhhhCCeEEEecccccccccC--C--CCCcc-chHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEec
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQ--D--ERPFV-SSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~--~--~~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~ 289 (463)
++|.++|+++|+++|+|++|..+... . +.... .+.. ...+..+++.|++|+++ ++.++||+++
T Consensus 226 ~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~---------~~~g~d~~~~s~~K~l~--~~~~~g~~~~- 293 (497)
T 3mc6_A 226 EGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF---------RVPGVTSISCDTHKYGF--APKGSSVIMY- 293 (497)
T ss_dssp TTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST---------TSTTCCEEEEETTTTTC--CCSSCEEEEC-
T ss_pred HHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc---------cCCCCcEEEECchhhcC--CCCCceeEEe-
Confidence 67888899999999999999854321 0 00000 1110 11223578899999763 6788999995
Q ss_pred CCChhHHHHHHhhhhhcc----------cCC-----hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 290 NIPPKTVDEIYKIASIAL----------SPN-----VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~----------~~~-----~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
+++.+..........+ ..+ ..++.++...+. ....++..++..++++++.+
T Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~------------~~~~~~~~~~~~~~~~~l~~ 359 (497)
T 3mc6_A 294 --RNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG------------ENGYIESCQEIVGAAMKFKK 359 (497)
T ss_dssp --SSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred --cCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHH
Confidence 4444333211111000 001 222333333321 12245567778889999999
Q ss_pred Hhhc-CCCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-C
Q 041151 355 GFNS-CRNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-P 431 (463)
Q Consensus 355 ~L~~-~pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~ 431 (463)
.|++ +||+.+. ++.++++.| ..+.. +..+ +.+.|.++||.+.++..+ ..+|+++. .
T Consensus 360 ~L~~~~~g~~~~~~~~~~~v~~---~~~~~-----------~~~~-l~~~L~~~Gi~v~~~~~~------~~~ri~~~~~ 418 (497)
T 3mc6_A 360 YIQENIPDLDIMGNPRYSVISF---SSKTL-----------NIHE-LSDRLSKKGWHFNALQKP------VALHMAFTRL 418 (497)
T ss_dssp HHHHSCTTCEECSCCCSSEEEE---ECTTT-----------THHH-HHHHHHTTTCBCEECCSS------CCEEEECCTT
T ss_pred HHHhcCCCEEEecCCCeeEEEE---eCCCC-----------CHHH-HHHHHHhCCEEEecCCCC------CeEEEEEeCC
Confidence 9999 6898886 455666655 22210 1334 455667789998875432 14899998 8
Q ss_pred CcCcHHHHHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~~~~~ 452 (463)
+.+++++++++|+++++++.+
T Consensus 419 t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 419 SAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp TTCTHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999987654
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=221.17 Aligned_cols=314 Identities=14% Similarity=0.086 Sum_probs=195.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
|+.+++++.+++... ..|+. ..+++.++++++.+.++ .+++|++|+|+++++..+++.... ..++.|++
T Consensus 70 ~p~v~~a~~~~~~~~----~~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~ 139 (427)
T 3fq8_A 70 HPEVIEALKVAMEKG----TSFGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIK 139 (427)
T ss_dssp CHHHHHHHHHHHTTC----SCCSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHHhC----CCcCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence 889999999888762 12332 34677778887776655 578999999999999999954320 23466666
Q ss_pred c----cCcee----c----------CCCccc--------------ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTTW----K----------RQQIGV--------------LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~~----~----------~~~~~~--------------d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
. +|... . ....++ |+ +.|++.+++. ..++++|+++.++|++|.+
T Consensus 140 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~---~~~~~~vi~~p~~~~~G~~ 215 (427)
T 3fq8_A 140 FEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDL-EAVKALFAEN---PGEIAGVILEPIVGNSGFI 215 (427)
T ss_dssp EETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCH-HHHHHHHHHS---TTTEEEEEECSSBCTTSCB
T ss_pred ECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCH-HHHHHHHHhC---CCCEEEEEEcCCcCCCCCc
Confidence 4 22111 0 001111 88 9999998762 1146777666667778876
Q ss_pred CC-HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 LS-EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 ~s-~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
.+ .+.+++|.++|++||++||+||+|.++ .. +.. ... ..+ .- ..-+.||||++ + +|+|+||++
T Consensus 216 ~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~-g~~-~~~----~~~----~~---~~di~t~sK~~-~-~G~~~G~~~ 279 (427)
T 3fq8_A 216 VPDAGFLEGLREITLEHDALLVFDEVITGF-RI-AYG-GVQ----EKF----GV---TPDLTTLGKII-G-GGLPVGAYG 279 (427)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TT-BTT-HHH----HHT----TC---CCSEEEECGGG-G-TTSSCEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEecccccc-cc-Ccc-hhh----Hhc----CC---CCChhhhhhhh-h-CCcceEEEE
Confidence 65 555999999999999999999999976 42 211 111 111 11 11246899999 6 799999998
Q ss_pred ecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---C
Q 041151 288 MTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---R 360 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---p 360 (463)
+++++++.+... ...+++.+.+.+.++.++++.. .+ +.+.++++++++.+.+.|+++ .
T Consensus 280 ---~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~-----------~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 344 (427)
T 3fq8_A 280 ---GKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELL-----------RQ-PGTYEYLDQITKRLSDGLLAIAQET 344 (427)
T ss_dssp ---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHH-----------TS-TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---EcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHH-----------Hh-cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 589998888653 2235677889998888876411 11 123444555555555555442 0
Q ss_pred CcccccCCceeEEeeeccCCh-h-hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHH
Q 041151 361 NVVCNFTEGAMYSFPQIRLPP-K-AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPA 438 (463)
Q Consensus 361 g~~~~~~~g~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~ 438 (463)
++....+..++++|+.+.-.. . +.. ...........+...|.++||.+.|+.. ..+|+++..+++++++
T Consensus 345 ~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-------~r~~~~~~~t~e~i~~ 415 (427)
T 3fq8_A 345 GHAACGGQVSGMFGFFFTEGPVHNYED--AKKSDLQKFSRFHRGMLEQGIYLAPSQF-------EAGFTSLAHTEEDIDA 415 (427)
T ss_dssp TCCCEEEEETTEEEEESSSCCCCSHHH--HTTSCHHHHHHHHHHHHHTTEECCSSTT-------SCEECCTTCCHHHHHH
T ss_pred CCCeEEEEeeeEEEEEEecCccccccc--cccccHHHHHHHHHHHHHCCcEEecCCC-------CCEEeeCcCCHHHHHH
Confidence 232223334566665443110 0 000 0000000122234456678999998652 1466666689999999
Q ss_pred HHHHHHHHHHH
Q 041151 439 IMESFKKFNDE 449 (463)
Q Consensus 439 ~~~~l~~~l~~ 449 (463)
++++|++++++
T Consensus 416 ~l~~l~~~l~~ 426 (427)
T 3fq8_A 416 TLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998864
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=221.37 Aligned_cols=306 Identities=12% Similarity=0.058 Sum_probs=202.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG-------E 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~-------~ 154 (463)
++.+.+++.+++.... .+....+..+...++++.+.+.++ ...++|++|+|+++++..+++.+. . +
T Consensus 93 ~p~v~~A~~~~~~~~~----~~~~~~~~~~~~~~L~e~la~~~~--~~~~~v~~~~sGseA~~~Alk~a~-~~~~~~g~~ 165 (457)
T 3tfu_A 93 HPALDQALTTQLRVMN----HVMFGGLTHEPAARLAKLLVDITP--AGLDTVFFSDSGSVSVEVAAKMAL-QYWRGRGLP 165 (457)
T ss_dssp CHHHHHHHHHHHHHCS----CCCSSSEECHHHHHHHHHHHHHSS--TTEEEEEEESSHHHHHHHHHHHHH-HHHHHTTCT
T ss_pred CHHHHHHHHHHHHhcc----CccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCcHHHHHHHHHHHHH-HHHHhcCCC
Confidence 7899999998887631 111111223444455555544433 456799999999999999999886 4 5
Q ss_pred CC-EEEEc----cCcee----------------------------cCCCc-ccChHHHHHHHHHHHHhcCCceeEEEEEC
Q 041151 155 GD-GVVLL----FHTTW----------------------------KRQQI-GVLIINDLQQSVAQARSKGITVRAMVIIN 200 (463)
Q Consensus 155 gd-~Vlvp----~g~~~----------------------------~~~~~-~~d~~~~l~~~l~~~~~~~~~~~~i~l~~ 200 (463)
|+ .|++. +|... +...+ ..|+ +.|++++++.. .++++|+++.
T Consensus 166 g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~-~~le~~l~~~~---~~~aavi~ep 241 (457)
T 3tfu_A 166 GKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYS-AAFEAQLAQHA---GELAAVVVEP 241 (457)
T ss_dssp TCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHH-HHHHHHHHHHG---GGEEEEEECS
T ss_pred CCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHH-HHHHHHHHhCC---CCEEEEEEeC
Confidence 64 66664 22110 11111 1377 99999998421 1688888887
Q ss_pred -CCCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC
Q 041151 201 -PGNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278 (463)
Q Consensus 201 -p~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 278 (463)
++||+|.+. +.+.+++|.++|++||+++|+||+|..+... +. ....... +. .. .++ ||||.+ +
T Consensus 242 ~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~-G~-~~a~~~~--~~----~p--dii---t~sK~l-~- 306 (457)
T 3tfu_A 242 VVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRT-GA-LFAADHA--GV----SP--DIM---CVGKAL-T- 306 (457)
T ss_dssp SEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSTHHHH--TC----CC--SEE---EECGGG-G-
T ss_pred CCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccc-cc-hhHhHhc--CC----Cc--eEE---EEChhh-h-
Confidence 899999776 7778999999999999999999999986542 22 1122211 11 12 222 899998 4
Q ss_pred CC-ceeEEEEecCCChhHHHHHHhh-----h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041151 279 CG-QRGGYFEMTNIPPKTVDEIYKI-----A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARM 351 (463)
Q Consensus 279 ~G-~R~G~~~~~~~~~~~~~~l~~~-----~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (463)
.| +|+||++ +++++++.+... . ..+++.+++.+.++.++|+ ... .+.+.++++++.++
T Consensus 307 gG~~~lG~v~---~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~-----------~~~-~~~~~~~~~~~~~~ 371 (457)
T 3tfu_A 307 GGYLSLAATL---CTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVE-----------LLL-GQDWRTRITELAAG 371 (457)
T ss_dssp TTSSCCEEEE---EEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHH-----------HHH-TSCHHHHHHHHHHH
T ss_pred CCCcceEEEE---EcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHH-----------HHh-hhHHHHHHHHHHHH
Confidence 35 7999999 589999988621 2 2467889999998888763 111 12355666777777
Q ss_pred HHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 352 MTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 352 l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
+.+.|+++ |++....+.|. ++++.+.-+. +..++. ..|.++||.++|.. +++||+
T Consensus 372 l~~~L~~l~~~~~v~~vr~~G~-~~~i~l~~~~------------~~~~~~-~~l~~~Gv~v~~~~--------~~lRi~ 429 (457)
T 3tfu_A 372 LTAGLDTARALPAVTDVRVCGA-IGVIECDRPV------------DLAVAT-PAALDRGVWLRPFR--------NLVYAM 429 (457)
T ss_dssp HHHHHGGGGGSTTEEEEEECSS-CEEEEESSCC------------CHHHHH-HHHHHTTEECCCBT--------TEEEEC
T ss_pred HHHHHHHHhcCCCeeeeecCCe-EEEEEECCcc------------cHHHHH-HHHHHCCeEEEecC--------CEEEEE
Confidence 77777654 45554555554 4554443211 234444 44566799998732 379999
Q ss_pred ec--CCcCcHHHHHHHHHHHHHHH
Q 041151 429 IL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+. .+++++++++++|+++++++
T Consensus 430 p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 430 PPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHh
Confidence 76 78999999999999998764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=220.29 Aligned_cols=312 Identities=12% Similarity=0.073 Sum_probs=198.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH---HhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC---VIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~~gd~V 158 (463)
|+.+.+++.+.+... . .|+ +..++++++++++.+.++ .+++|++|+|+++++..++++ +. ++++.|
T Consensus 75 ~~~v~~a~~~~~~~~--~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~~al~~ar~~~-~~~~vi 143 (453)
T 2cy8_A 75 HPRVNAAIAEALSHG--V--QYA---ASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTLLALRVARAFT-GRRMIL 143 (453)
T ss_dssp CHHHHHHHHHHHTTT--C--SSC---SSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHHHHHHHHHHHH-CCCEEE
T ss_pred CHHHHHHHHHHHHhC--C--CCC---CCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh-CCCEEE
Confidence 789999998888651 1 232 356899999999987754 578999999999999999998 65 554444
Q ss_pred EEc--cC-ce-------------e-----c----CC----CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-
Q 041151 159 VLL--FH-TT-------------W-----K----RQ----QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC- 208 (463)
Q Consensus 159 lvp--~g-~~-------------~-----~----~~----~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~- 208 (463)
+.+ +. .. + + .. .+ .|+ +.|++.+++.. +++++|+++..+||||.+
T Consensus 144 ~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~-~~le~~l~~~~---~~~~~vi~ep~~~~tG~~~ 218 (453)
T 2cy8_A 144 RFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-DDI-EGMREVFANHG---SDIAAFIAEPVGSHFGVTP 218 (453)
T ss_dssp EECC----------------------------CGGGEEEECT-TCH-HHHHHHHHHHG---GGEEEEEECSSEHHHHTEE
T ss_pred EEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-CCH-HHHHHHHHhcC---CCEEEEEECCCCCCCCCcC
Confidence 333 21 10 0 0 00 01 378 99999987521 156666544445779975
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
.+.+++++|.++|++||++||+||+|..+ .. +. ...+... +. .. . +.|+||++ + +|+|+||++
T Consensus 219 ~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~-g~-~~~~~~~--~~----~~--d---i~s~sK~l-~-~G~~~G~v~- 281 (453)
T 2cy8_A 219 VSDSFLREGAELARQYGALFILDEVISGF-RV-GN-HGMQALL--DV----QP--D---LTCLAKAS-A-GGLPGGILG- 281 (453)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTTTT-TT-CT-THHHHHH--TC----CC--S---EEEEEGGG-G-TTSSCEEEE-
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCcccc-cc-Cc-hhhhHHh--CC----CC--c---EEEEChhh-h-CCcceEEEe-
Confidence 57999999999999999999999999976 42 21 1111111 11 12 1 34899999 6 499999999
Q ss_pred cCCChhHHHHHHh---h---hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 041151 289 TNIPPKTVDEIYK---I---ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR-- 360 (463)
Q Consensus 289 ~~~~~~~~~~l~~---~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p-- 360 (463)
+++++++.+.. . ...+++.+++.+.++.++|+ .+. .+++.++++++++++.+.|+++.
T Consensus 282 --~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~----------~~~--~~~~~~~~~~~~~~l~~~L~~~~~~ 347 (453)
T 2cy8_A 282 --GREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAID----------TIL--EDDVCAKINDLGQFAREAMNHLFAR 347 (453)
T ss_dssp --ECHHHHTTSSSCC---------CCCCHHHHHHHHHHHH----------HHH--HTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --chHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHH----------HHh--hhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 48888877755 1 22356788899988887763 101 13355666777777777776531
Q ss_pred -Ccc-cccCCceeEEeeeccC-----ChhhHHHHhhcCC-C--ChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 361 -NVV-CNFTEGAMYSFPQIRL-----PPKAIEAAKRAGK-V--PDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 361 -g~~-~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~-~--~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
++. ...+.| .++|+.+.- .... ........ . +..++... |.++||.+.|+ + .+|+++.
T Consensus 348 ~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-l~~~Gv~v~~~-------~--~~~l~~~ 415 (453)
T 2cy8_A 348 KGLNWLAYGRF-SGFHLMPGLPPNTTDTGS-ITRAEVARPDVKMIAAMRMA-LILEGVDIGGR-------G--SVFLSAQ 415 (453)
T ss_dssp TTCCEEEECCT-TEEEEEETSCTTCCCCHH-HHTTCSCCCCHHHHHHHHHH-HHHTTEECBTT-------T--EEECCTT
T ss_pred CCCcEEEEEee-eEEEEEEecccccccccc-ccccccccccHHHHHHHHHH-HHHCCeEEeCC-------C--CEEeecc
Confidence 332 234444 566765542 1000 00000000 0 12344444 55689999652 1 3788766
Q ss_pred CCcCcHHHHHHHHHHHHHHHHH
Q 041151 431 PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 431 ~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.+++++++++++|+++++++.+
T Consensus 416 ~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 416 HEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999987754
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=219.87 Aligned_cols=275 Identities=9% Similarity=-0.034 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE---EEEc-----------------cCcee---
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG---VVLL-----------------FHTTW--- 166 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~---Vlvp-----------------~g~~~--- 166 (463)
..+++.++++++ .++++|++|+|+++++..++.+++ +||+. |+++ .|.++
T Consensus 114 ~~l~~~la~~~g------~~~~~v~~t~g~t~al~~~~~~~~-~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~ 186 (465)
T 3e9k_A 114 ESIVGLMKDIVG------ANEKEIALMNALTVNLHLLMLSFF-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEES 186 (465)
T ss_dssp HHHHGGGHHHHT------CCGGGEEECSCHHHHHHHHHHHHC-CCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHcC------CCcCCEEEECCHHHHHHHHHHHhc-cccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceee
Confidence 567788887775 568899999999999999999997 66655 9886 34432
Q ss_pred ------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 167 ------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 167 ------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
....+.+|+ ++|++++++.. +++++|++++||||||.+++ +++|.++|+++|++||+|++|+....
T Consensus 187 ~v~~~~~~~~~~~d~-~~l~~~i~~~~---~~~~lv~~~~~~n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~~- 258 (465)
T 3e9k_A 187 MRMIKPREGEETLRI-EDILEVIEKEG---DSIAVILFSGVHFYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGNV- 258 (465)
T ss_dssp EEEECCCTTCSSCCH-HHHHHHHHHHG---GGEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS-
T ss_pred eEEEecCCCCCccCH-HHHHHHHHhcC---CCeEEEEEeCcccCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCCc-
Confidence 234567899 99999997421 17999999999999999998 67778889999999999999985322
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh----------------
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS---------------- 304 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~---------------- 304 (463)
...+... + ..+++.|++|++.+.|+ ++|++++ ++++++.+.....
T Consensus 259 ----~~~~~~~--------~---~D~~~~s~~K~l~~gp~-~~g~l~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 319 (465)
T 3e9k_A 259 ----ELYLHDW--------G---VDFACWCSYKYLNAGAG-GIAGAFI---HEKHAHTIKPALVGWFGHELSTRFKMDNK 319 (465)
T ss_dssp ----CCCHHHH--------T---CCEEEECSSSTTCCCTT-CCCEEEE---CGGGTTTSCCSSCCGGGBCHHHHTTCCSC
T ss_pred ----CCchhhc--------C---CCEEEECcccccccCCC-ceEEEEE---cHHHHhhcCCcccCccCCCCCcccccCCC
Confidence 2233332 1 23788999999832333 6899985 7777655432111
Q ss_pred ----------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcC----------CCcc
Q 041151 305 ----------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSC----------RNVV 363 (463)
Q Consensus 305 ----------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~----------pg~~ 363 (463)
...+++.+...++.++++ .+..+ ++++++++.++++++.+.|++. +|++
T Consensus 320 ~~~~~~~~~~~~gt~~~~~~~a~~aal~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~ 389 (465)
T 3e9k_A 320 LQLIPGVCGFRISNPPILLVCSLHASLE----------IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVN 389 (465)
T ss_dssp CCBCSSGGGGCCSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEE
T ss_pred cCcCCChHHhccCCccHHHHHHHHHHHH----------HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeE
Confidence 001344444555555542 12222 5778889999999999999884 6888
Q ss_pred cccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c--CCcCcH
Q 041151 364 CNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L--PAEEDM 436 (463)
Q Consensus 364 ~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~--~~~e~i 436 (463)
+..|. .+.++++.++ .. ..++ .+.|.++||.+.. . +.+++|+|+ . ++++|+
T Consensus 390 ~~~p~~~~~~g~~~~~~~~--~~------------~~~l-~~~L~~~Gi~v~~----~---~~~~iRis~~~~~~t~edi 447 (465)
T 3e9k_A 390 IITPSHVEERGCQLTITFS--VP------------NKDV-FQELEKRGVVCDK----R---NPNGIRVAPVPLYNSFHDV 447 (465)
T ss_dssp ECSCSSGGGBCSCEEEEEC--CT------------TCCH-HHHHHTTTEECEE----E---TTTEEEEBCCTTTCCHHHH
T ss_pred EeCCCCHhhcccEEEEEec--CC------------HHHH-HHHHHHCCEEEec----C---CCCEEEEeCcccCCCHHHH
Confidence 88765 2445554443 11 2233 3456678999873 2 234899998 4 789999
Q ss_pred HHHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDEF 450 (463)
Q Consensus 437 ~~~~~~l~~~l~~~ 450 (463)
+++++.|++++++.
T Consensus 448 ~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 448 YKFTNLLTSILDSA 461 (465)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=212.81 Aligned_cols=320 Identities=10% Similarity=-0.037 Sum_probs=210.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC---CcEEEcCCcHHHHHHHHHHHhcC-----
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP---ELIFLTDGASKGVMQTLNCVIRG----- 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~---~~i~~t~G~~~al~~~~~~l~~~----- 153 (463)
++.+.+++.+++.. ....|....+..++++++.+++.+.+|.+.+. ..+++|+|+++++..++.++. +
T Consensus 55 ~~~v~e~~~~a~~~---~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~-~~~~~~ 130 (452)
T 2dgk_A 55 DENVHKLMDLSINK---NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK-WRWRKR 130 (452)
T ss_dssp CHHHHHHHHHTTTC---BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH-HHHHHH
T ss_pred hHHHHHHHHHHhcc---CCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH-HHHHHH
Confidence 66788887777754 33445555577889999999998888865432 259999999999999998875 4
Q ss_pred ---CC-----CEEEEc------------cCcee---c-CC-CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 154 ---EG-----DGVVLL------------FHTTW---K-RQ-QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 154 ---~g-----d~Vlvp------------~g~~~---~-~~-~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
+| +.|+++ .|+++ + .. ++.+|+ +.|++++++ ++++|++++|+||||.+
T Consensus 131 ~~~~G~~~~~~~vi~~~~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~-~~l~~~i~~------~t~~v~~~~~~n~tG~~ 203 (452)
T 2dgk_A 131 MEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDP-KRMIEACDE------NTIGVVPTFGVTYTGNY 203 (452)
T ss_dssp HHHTTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCH-HHHHHHCCT------TEEEEECBBSCTTTCBB
T ss_pred HHhcCCCCCCcEEEECCCcHHHHHHHHHcCceEEEEecCCCCCeECH-HHHHHHHhh------CCEEEEEEcCCcCCccc
Confidence 55 588887 56666 2 22 688999 999999987 79999999999999999
Q ss_pred CCHHHHHHHHHHhhhC------CeEEEeccccccccc--CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 209 LSEANLREILRFCYQE------NLVLLGDEVYQQNIY--QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~------~~~vi~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
.+ +++|.++|+++ ++++++|++|..+.. -.+.....+ ...+-.++..|++| + ++++
T Consensus 204 ~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~-----------~~~~~d~~~~~~hK-~-~~~~ 267 (452)
T 2dgk_A 204 EF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF-----------RLPRVKSISASGHK-F-GLAP 267 (452)
T ss_dssp CC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-----------TSTTEEEEEEETTT-T-TCCC
T ss_pred CC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhc-----------CCCCCcEEEECccc-c-cCCC
Confidence 76 67777788884 999999999987642 011111111 11112456788899 4 5688
Q ss_pred ceeEEEEecCCChhHH-HHHHhhhhh------c----ccC---ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHH
Q 041151 281 QRGGYFEMTNIPPKTV-DEIYKIASI------A----LSP---NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLR 346 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~-~~l~~~~~~------~----~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (463)
+++||+++ .+++.+ +.+...... . .+. ..+.|.++...+ .....+++.+++.
T Consensus 268 ~~~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~l------------g~~g~~~~~~~~~ 333 (452)
T 2dgk_A 268 LGCGWVIW--RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL------------GREGYTKVQNASY 333 (452)
T ss_dssp SSCEEEEE--SSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred CCeEEEEE--cCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHH------------hHHHHHHHHHHHH
Confidence 99999997 344432 333211110 0 011 122333333222 1123456778889
Q ss_pred HHHHHHHHHhhcCCCcccccC-----CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCC
Q 041151 347 RRARMMTDGFNSCRNVVCNFT-----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEG 421 (463)
Q Consensus 347 ~~~~~l~~~L~~~pg~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~ 421 (463)
++++++.+.|++++|+.+..| ..+++.+ ++. ... ....+..++ .+.|.++||.+..........+
T Consensus 334 ~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f-~~~--~~~------~~~~~~~~l-~~~L~~~Gi~v~~~~~~~~~~~ 403 (452)
T 2dgk_A 334 QVAAYLADEIAKLGPYEFICTGRPDEGIPAVCF-KLK--DGE------DPGYTLYDL-SERLRLRGWQVPAFTLGGEATD 403 (452)
T ss_dssp HHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEE-EEC--TTC------CCSCCHHHH-HHHHHHTTCBCCEEECSTTCTT
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEE-Eec--Ccc------cccCCHHHH-HHHHHhcCCeeeeeeCCcccCC
Confidence 999999999999878887643 3444443 332 110 000012344 4556678997654222111123
Q ss_pred CcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 422 IFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 422 ~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
..++|++++ .++++++++++.|+++++++.+
T Consensus 404 ~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~ 436 (452)
T 2dgk_A 404 IVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD 436 (452)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 458999999 6789999999999999887765
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=209.08 Aligned_cols=272 Identities=14% Similarity=0.139 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCCcc
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQIG 172 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~~~ 172 (463)
+.++++++.+.+.+| .+++++++|+++++..++.+++ ++||+|+++ .|.++ ..+.
T Consensus 81 p~~~~l~~~la~~~g----~~~~~~~~sG~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~-- 153 (414)
T 3ndn_A 81 PTVSVFEERLRLIEG----APAAFATASGMAAVFTSLGALL-GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDG-- 153 (414)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred hHHHHHHHHHHHHHC----CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCC--
Confidence 344444444444434 3678889989999999999997 899999997 23333 1111
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
-|+ +.|++++++ ++++|++++|+||||.+.+ +++|+++|+++|++||+|++|+...+. . ++
T Consensus 154 ~d~-~~l~~ai~~------~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~--~---~~---- 214 (414)
T 3ndn_A 154 DDL-SQWERALSV------PTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ--Q---GF---- 214 (414)
T ss_dssp TCH-HHHHHHTSS------CCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC--C---CG----
T ss_pred CCH-HHHHHhcCC------CCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC--C---ch----
Confidence 178 999999876 8999999999999999977 778888999999999999999854331 1 11
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHH-HHHhhhh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVD-EIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~-~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
.+ . ..+++.|+||++ +.+| +++||++ ++++.+. .+..... .....+.....++...++
T Consensus 215 -~~----g---~div~~S~sK~l-~~~G~~~~G~vv---~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~------- 275 (414)
T 3ndn_A 215 -PL----G---VDVVVYSGTKHI-DGQGRVLGGAIL---GDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLE------- 275 (414)
T ss_dssp -GG----T---CSEEEEETTTTT-TCSSCCCCEEEE---ECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGG-------
T ss_pred -hc----C---CCeEeccCCccc-cCCCCceEEEEE---ECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------
Confidence 11 1 248899999999 7778 8999999 4777665 6665444 334444444443333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCC----------------ceeEEeeeccCCh---hhHHHHhh
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTE----------------GAMYSFPQIRLPP---KAIEAAKR 389 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~----------------g~~~~~~~~~~~~---~~~~~~~~ 389 (463)
.+....++..++++.+.+.|++.|++..+ .|. .|.++++.++-.. .
T Consensus 276 -------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~------- 341 (414)
T 3ndn_A 276 -------TLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAK------- 341 (414)
T ss_dssp -------GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHH-------
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccH-------
Confidence 22334556677888888999887765432 221 3556675553210 0
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCC--------------------CCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQ--------------------KEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--------------------~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
.....+...++..++.+.+|..+.. .-..+++|||++. |+.+.+++.|++++
T Consensus 342 ----~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~--e~~~dli~dl~~al 413 (414)
T 3ndn_A 342 ----QRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL--EDTDDLIADIDRAL 413 (414)
T ss_dssp ----HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHHHHhh
Confidence 0222233445666777777776532 0124689999995 67778888887765
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=208.72 Aligned_cols=169 Identities=9% Similarity=0.118 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCCcc
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQIG 172 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~~~ 172 (463)
+++++++++++ .+ +.|++++| ++++..++.+++ ++||.|+++ .|.++ ..+ .
T Consensus 2 ~l~~~la~~~g------~~-~~i~~~sG-~~a~~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~ 70 (331)
T 1pff_A 2 ALEGKIAKLEH------AE-ACAATASG-MGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID--M 70 (331)
T ss_dssp HHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC--T
T ss_pred hHHHHHHHHhC------CC-eEEEeCCh-HHHHHHHHHHhc-CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC--C
Confidence 68999999985 33 56666666 899999999997 899999997 13333 111 1
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh-CCeEEEecccccccccCCCCCccchHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ-ENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~-~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
.|+ +.+++.+++ ++++|++++|+||||.+++ +++|.++|++ +|+++|+|++|+.+.+. . ++ .
T Consensus 71 ~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~--~---~~-~- 133 (331)
T 1pff_A 71 AVP-GNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT--N---PL-D- 133 (331)
T ss_dssp TST-THHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC--C---GG-G-
T ss_pred CCH-HHHHHhhcC------CCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC--C---hh-h-
Confidence 477 889988876 7999999999999999997 7888889999 99999999999876541 1 11 1
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEecCCCh-hHHHHHHhhhhh--cccCChHHHHHHHHhc
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEMTNIPP-KTVDEIYKIASI--ALSPNVPAQIFMGLMV 321 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~~~~~~-~~~~~l~~~~~~--~~~~~~~~q~~~~~~l 321 (463)
+ ++++++.|+||++ +.+|.| +||+++ ++ ++++.+...... +.+.+.+.+.++...+
T Consensus 134 ---~-------~~d~~~~s~~K~~-~~~~~r~~G~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 193 (331)
T 1pff_A 134 ---L-------GVDIVVHSATKYI-NGHTDVVAGLVCS---RADIIAKVKSQGIKDITGAIISPHDAWLITRGT 193 (331)
T ss_dssp ---G-------TCSEEEEETTTTT-SSSSSCCCEEEEE---CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred ---c-------CCcEEEEECcccc-CCCCCceEEEEEe---CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCc
Confidence 1 2458999999999 889999 899984 76 888888876643 3456777776655554
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-24 Score=214.86 Aligned_cols=312 Identities=12% Similarity=0.024 Sum_probs=197.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH---HhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC---VIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~~gd~V 158 (463)
++.+.+++.+.+... ....| ..++++++++.+.+..+ .+++|++|+|+++++..++++ +. + ++.|
T Consensus 74 ~~~v~~a~~~~~~~~--~~~~~-----~~~~~~~l~~~la~~~~---~~~~v~~~~sgseA~~~al~~ar~~~-~-~~~v 141 (434)
T 2epj_A 74 HPRVLEAVEEALARG--WLYGA-----PGEAEVLLAEKILGYVK---RGGMIRFVNSGTEATMTAIRLARGYT-G-RDLI 141 (434)
T ss_dssp CHHHHHHHHHHHHTC--SCCSS-----CCHHHHHHHHHHHHHHC---TTCEEEEESSHHHHHHHHHHHHHHHH-C-CCEE
T ss_pred CHHHHHHHHHHHHhC--CCCCC-----CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh-C-CCeE
Confidence 789999999888761 11223 23455556666655443 468999999999999999997 54 4 4556
Q ss_pred EEc----cCcee-----c----------C-CC---------c---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 159 VLL----FHTTW-----K----------R-QQ---------I---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 159 lvp----~g~~~-----~----------~-~~---------~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
+++ +|... . . .+ . -.|+ +.|++.+++.. .++++|+++..+||||
T Consensus 142 i~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~~~~vi~ep~~~~~G 217 (434)
T 2epj_A 142 LKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDV-EALERVFAEYG---DRIAGVIVEPVIANAG 217 (434)
T ss_dssp EEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCH-HHHHHHHHHHG---GGEEEEEECSSBCSSS
T ss_pred EEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCH-HHHHHHHHhCC---CCEEEEEEeCCcCCCC
Confidence 664 22110 0 0 00 0 0378 99999997521 1566655444467799
Q ss_pred cCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 207 QCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 207 ~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
.+. +.+.+++|.++|++||+++|+||+|..+.. +. .... . .++. .. -+.||||++ +. |+|+||
T Consensus 218 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~--g~-~~~~-~---~~~~--~~-----di~s~sK~l-~~-G~~~G~ 281 (434)
T 2epj_A 218 VIPPRREFLAALQRLSRESGALLILDEVVTGFRL--GL-EGAQ-G---YFNI--EG-----DIIVLGKII-GG-GFPVGA 281 (434)
T ss_dssp CBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTS--ST-THHH-H---HHTC--CC-----SEEEEEGGG-GT-TSSCEE
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeC--Cc-chhh-H---HhCC--CC-----Ceeeecchh-cC-Ccceee
Confidence 766 799999999999999999999999997632 21 1111 1 1111 11 235999999 64 999999
Q ss_pred EEecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Q 041151 286 FEMTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC-- 359 (463)
Q Consensus 286 ~~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 359 (463)
++ +++++++.+... ...+++.+++.+.++.++|+ ..++ +++.++++++++++.+.|+++
T Consensus 282 v~---~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~-----------~~~~-~~~~~~~~~~~~~l~~~L~~~~~ 346 (434)
T 2epj_A 282 VA---GSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLK-----------ALEE-EPVYSVSREAAKALEEAASEVLD 346 (434)
T ss_dssp EE---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHH-----------HHHH-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ee---ecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHH-----------HHHh-cCHHHHHHHHHHHHHHHHHHHHh
Confidence 99 488888777652 12356778888888877763 2222 345667777777887777654
Q ss_pred -CCccc-ccCCceeEEeeeccC-Ch-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCc
Q 041151 360 -RNVVC-NFTEGAMYSFPQIRL-PP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEED 435 (463)
Q Consensus 360 -pg~~~-~~~~g~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~ 435 (463)
.++.. ..+ .+.++|+.+.- +. .+.+. ......+..++. ..|.++||.+.|+.. .++|+++..++++
T Consensus 347 ~~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~Gv~v~~~~~-------~~~~~~~~~t~e~ 416 (434)
T 2epj_A 347 RTGLPYTINR-VESMMQLFIGVEEVSNAAQA-RKADKKFYVKLH-EEMLRRGVFIAPSNL-------EAVFTGLPHQGEA 416 (434)
T ss_dssp HHTCCEEEEE-ETTEEEEEETCSCCSSHHHH-TTSCHHHHHHHH-HHHHHTTEECCSSTT-------SCEECCTTCSHHH
T ss_pred hCCCcEEEEE-eeeEEEEEEeCCCcccchhc-cccCHHHHHHHH-HHHHHCCeEEeccCC-------CcEEEeccCCHHH
Confidence 13322 333 34566755532 10 00000 000000123444 445678999999742 1478877789999
Q ss_pred HHHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDEF 450 (463)
Q Consensus 436 i~~~~~~l~~~l~~~ 450 (463)
+++++++|+++++++
T Consensus 417 i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 417 LEIAVEGLRSSLKTV 431 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=207.42 Aligned_cols=300 Identities=12% Similarity=0.079 Sum_probs=202.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH---hcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV---IRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l---~~~~gd~V 158 (463)
|+.+++++.+.+... .|.+.....++|++++++++ . ++|++|+|+++++..++.++ + ++||+|
T Consensus 12 ~~~v~~a~~~~~~~~-----~~~~~~~~~~l~~~la~~~~------~--~~v~~~~ggt~al~~~~~~~~~~~-~~gd~V 77 (375)
T 2fnu_A 12 DKEDKKAVLEVLNSK-----QLTQGKRSLLFEEALCEFLG------V--KHALVFNSATSALLTLYRNFSEFS-ADRNEI 77 (375)
T ss_dssp CHHHHHHHHHHHTSS-----CCSSSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHSSCCC-TTSCEE
T ss_pred CHHHHHHHHHHHHcC-----cccCChHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHhcccC-CCCCEE
Confidence 889999998887651 23344467899999999985 2 28999999999999999999 7 899999
Q ss_pred EEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 159 VLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 159 lvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+++ .|.++ ......+|+ +.|++.+++ ++++|++++| ||.+.+ +++|.++|
T Consensus 78 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~~---tG~~~~---l~~i~~l~ 144 (375)
T 2fnu_A 78 ITTPISFVATANMLLESGYTPVFAGIKNDGNIDE-LALEKLINE------RTKAIVSVDY---AGKSVE---VESVQKLC 144 (375)
T ss_dssp EECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCG-GGSGGGCCT------TEEEEEEECG---GGCCCC---HHHHHHHH
T ss_pred EECCCccHhHHHHHHHCCCEEEEeccCCCCCCCH-HHHHhhcCc------CceEEEEeCC---cCCccC---HHHHHHHH
Confidence 997 56665 222336899 999988876 7999888877 999987 67888889
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHH
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+++|++||+|++|+.+..... ..+ ...+ .+++.|+| |++ ++ | +|++++. .++++++.+
T Consensus 145 ~~~~~~li~D~a~~~~~~~~~---~~~-----------~~~~-~i~~~s~s~~K~~-~~-g--~g~~~~~-~~~~~~~~~ 204 (375)
T 2fnu_A 145 KKHSLSFLSDSSHALGSEYQN---KKV-----------GGFA-LASVFSFHAIKPI-TT-A--EGGAVVT-NDSELHEKM 204 (375)
T ss_dssp HHHTCEEEEECTTCTTCEETT---EET-----------TSSS-SEEEEECCTTSSS-CC-S--SCEEEEE-SCHHHHHHH
T ss_pred HHcCCEEEEECccccCCeECC---eec-----------cccC-CeEEEeCCCCCCc-cc-c--CceEEEe-CCHHHHHHH
Confidence 999999999999986543111 111 2111 37788888 998 65 7 6777751 137788888
Q ss_pred Hhhhh-hc------------ccCC-hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 300 YKIAS-IA------------LSPN-VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 300 ~~~~~-~~------------~~~~-~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
..... .. .+.+ ...+..++..+. .....++..++++++++++.+.|+++||+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 273 (375)
T 2fnu_A 205 KLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLS-----------QLKKAPFLMQKREEAALTYDRIFKDNPYFTPL 273 (375)
T ss_dssp HHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHH-----------HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEES
T ss_pred HHHHhcCCccccccccccccccccCCCCHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 76543 11 1111 122222221110 11224456777888999999999998888776
Q ss_pred cC----Cce-eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC-------CC-------CC----CCC
Q 041151 366 FT----EGA-MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG-------FG-------QK----EGI 422 (463)
Q Consensus 366 ~~----~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~-------f~-------~~----~~~ 422 (463)
.+ .++ +++|+.++ ...+ .+..++ ...|.++||.++.+.. |+ .+ ...
T Consensus 274 ~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~l-~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 342 (375)
T 2fnu_A 274 HPLLKDKSSNHLYPILMH--QKFF--------TCKKLI-LESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYH 342 (375)
T ss_dssp GGGCSSCCCCSCEEEEEC--GGGG--------GGHHHH-HHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHH
T ss_pred CCCCCCCcceEEEEEEeC--cccc--------chHHHH-HHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHh
Confidence 54 233 44464443 1100 013344 4456788999984221 11 00 012
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+++||++. .+++++++++++|+++++++
T Consensus 343 ~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 343 AEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 58999999 58899999999999988764
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-24 Score=213.70 Aligned_cols=296 Identities=14% Similarity=0.105 Sum_probs=197.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++.+++++.+.+.. ..|.+..+..++|++++++++ .+++++++|+++++..++.++ + ++||+|++
T Consensus 16 ~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~-~~gd~Vi~ 81 (373)
T 3frk_A 16 EYEIKFKFEEIYKR-----NWFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDI-GFGDEVIV 81 (373)
T ss_dssp HHHHHHHHHHHHHH-----TCCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHHC-----CCccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCC-CCcCEEEE
Confidence 67788888877776 246666778999999999985 248999999999999999999 7 89999999
Q ss_pred c-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ ..+.+.+|+ +.|++++++ ++++|+ |+||||...+ +++|.++|+
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~l~~------~~~~v~---~~n~~G~~~~---l~~i~~l~~ 148 (373)
T 3frk_A 82 PSNTFIATALAVSYTGAKPIFVEPDIRTYNIDP-SLIESAITE------KTKAII---AVHLYGQPAD---MDEIKRIAK 148 (373)
T ss_dssp ETTSCTHHHHHHHHHSCEEEEECEETTTTEECG-GGTGGGCCT------TEEEEE---EECCTTCCCC---HHHHHHHHH
T ss_pred CCCCcHHHHHHHHHcCCEEEEEeccccccCcCH-HHHHHhcCC------CCeEEE---EECCCcCccc---HHHHHHHHH
Confidence 7 56665 235688999 999998876 789887 7789999877 667888888
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
++|+++|+|++|+.+..-+...... .. .+++.||| |.+ +.+| ++|+++. .++++++.+.
T Consensus 149 ~~~~~li~D~a~~~g~~~~~~~~~~------------~~---d~~~~S~~~~K~l-~~~g-~gg~~~~--~~~~~~~~~~ 209 (373)
T 3frk_A 149 KYNLKLIEDAAQAHGSLYKGMKVGS------------LG---DAAGFSFYPAKNL-GSLG-DGGAVVT--NDKDLAEKIK 209 (373)
T ss_dssp HHTCEEEEECTTCTTCEETTEETTS------------SS---SEEEEECCTTSSS-CCSS-SCEEEEE--SCHHHHHHHH
T ss_pred HcCCEEEEECCcccCCEECCEeccc------------cc---cEEEEeCcCCCcc-Cccc-eeEEEEe--CCHHHHHHHH
Confidence 9999999999998643211111100 01 27788877 887 5334 4888885 4567877777
Q ss_pred hhhhhc-------------ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-
Q 041151 301 KIASIA-------------LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF- 366 (463)
Q Consensus 301 ~~~~~~-------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~- 366 (463)
...... +..+.+...+.... +...+...++.+++.+++.+.|.+++ +.+..
T Consensus 210 ~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 274 (373)
T 3frk_A 210 ALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVK--------------LKYLDKWNEERRKIAQKYIAGINNPN-VIIPVE 274 (373)
T ss_dssp HHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHH--------------HHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCC
T ss_pred HHHhcCcccCCccccccccCCCCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhccCc-eEeccC
Confidence 654311 11122222222211 22234456667777888888888874 55432
Q ss_pred CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----------C---------CCcEEE
Q 041151 367 TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-----------E---------GIFHLR 426 (463)
Q Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-----------~---------~~~~lR 426 (463)
+.+....|..+.+.. .+.+.+.+.|.++||.++++...... . ..+.+|
T Consensus 275 ~~~~~~~~~~~~~~~------------~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 342 (373)
T 3frk_A 275 ADYAKHVWYTFVIRS------------EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILS 342 (373)
T ss_dssp CTTEECCCSSEEEEE------------SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEE
T ss_pred CCCCceeeEEEEEEe------------CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEE
Confidence 223322221111111 02333556677889999976521110 0 015799
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+++. .+++|++++++.|+++..++
T Consensus 343 l~~~~~~t~~di~~~~~~l~~~~~~~ 368 (373)
T 3frk_A 343 IPIWYGMKNEEIEYVIDKINAWKLEH 368 (373)
T ss_dssp ECCCTTCCHHHHHHHHHHHHTCC---
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 9999 89999999999998776554
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=214.00 Aligned_cols=304 Identities=12% Similarity=0.114 Sum_probs=198.0
Q ss_pred cHHHH-H-HHHH---HhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cC-
Q 041151 82 PADAI-A-RAKH---YLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RG- 153 (463)
Q Consensus 82 p~~~~-~-a~~~---~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~- 153 (463)
++.++ + ++.+ .+... ..|++ .+..+.+.++++.+.+.++ ...+++|++|+|+++++..+++.+. ..
T Consensus 72 ~p~v~~~~A~~~~~~~~~~~----~~~~~-~~~~~~~~~la~~la~~~~-~~~~~~v~~~~~gseA~~~aik~a~~~~~~ 145 (449)
T 2cjg_A 72 PPALVDDREFHAELMQAALN----KPSNS-DVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSR 145 (449)
T ss_dssp CHHHHTCHHHHHHHHHHHTC----CCCTT-TCCCHHHHHHHHHHHHHHC-CTTCCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc----CCCCc-ccCCHHHHHHHHHHHHhcC-CCCCCEEEEeCchHHHHHHHHHHHHHHhcc
Confidence 78899 8 8888 66652 12332 2233455555555555544 2467899999999999999997542 02
Q ss_pred ----------CCCEEEEc---cCce------------------------e---cCCC---c--------ccChHHHHHHH
Q 041151 154 ----------EGDGVVLL---FHTT------------------------W---KRQQ---I--------GVLIINDLQQS 182 (463)
Q Consensus 154 ----------~gd~Vlvp---~g~~------------------------~---~~~~---~--------~~d~~~~l~~~ 182 (463)
+|+.|++. +.+. + +..+ . ..++ +.|++.
T Consensus 146 ~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~le~~ 224 (449)
T 2cjg_A 146 HNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEAL-RQARAA 224 (449)
T ss_dssp HHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHH-HHHHHH
T ss_pred cccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHH-HHHHHH
Confidence 28888886 1110 0 1111 0 1234 558888
Q ss_pred HHHHHhcCCceeEEEEECCCCCCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCC
Q 041151 183 VAQARSKGITVRAMVIINPGNPTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261 (463)
Q Consensus 183 l~~~~~~~~~~~~i~l~~p~NPtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (463)
+++. .+++++|+++.++|||| ..++.+++++|.++|++||+++|+||+|..+.+. +. ...+... +. ..
T Consensus 225 i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~-g~-~~~~~~~--~~----~~ 293 (449)
T 2cjg_A 225 FETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLT-GT-AWAYQQL--DV----AP 293 (449)
T ss_dssp HHHS---TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-SS-SSTHHHH--TC----CC
T ss_pred HHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCcc-Cc-ceeeccc--CC----Cc
Confidence 8631 11677766555579999 5999999999999999999999999999976552 22 1122211 11 22
Q ss_pred CceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH-----hhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY-----KIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 262 ~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~-----~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
. +.||||++ |+||+++ ++++++.+. ... ..+++.+.+.|.++.++|+ ..
T Consensus 294 --d---i~t~sK~l------~iG~~~~---~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~-----------~~ 348 (449)
T 2cjg_A 294 --D---IVAFGKKT------QVCGVMA---GRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILE-----------VI 348 (449)
T ss_dssp --S---EEEECGGG------SSEEEEE---CGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHH-----------HH
T ss_pred --e---EEEecCcc------cEEEEEE---CHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHH-----------HH
Confidence 1 23789976 6999994 778877532 122 2467788999999888863 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc----CCC-cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEe
Q 041151 336 RESKGILESLRRRARMMTDGFNS----CRN-VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIST 410 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~----~pg-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v 410 (463)
.+ +.+.++++++++++.+.|++ +|+ +....+.|.|+ ++++ +... +..+++..++ ++||.+
T Consensus 349 ~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~-~~~~--~~~~----------~~~~~~~~l~-~~Gv~v 413 (449)
T 2cjg_A 349 EA-EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMC-AFSL--PTTA----------DRDELIRQLW-QRAVIV 413 (449)
T ss_dssp HH-HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEE-EEEC--SSHH----------HHHHHHHHHH-HTTEEC
T ss_pred Hh-ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEE-EEEE--CChH----------HHHHHHHHHH-HCCeEE
Confidence 21 34667778888888888875 354 55555666655 4344 3210 1344555544 689999
Q ss_pred eCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 411 VPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 411 ~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.|+. .+++|++++ .+++++++++++|+++++++
T Consensus 414 ~~~g-------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 414 LPAG-------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EEET-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9962 248999776 79999999999999988653
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=204.69 Aligned_cols=271 Identities=13% Similarity=0.097 Sum_probs=181.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~ 170 (463)
..++|+.++++++ .. +.|++++|+ +++..++.+++ ++||+|+++ .|.++ .-+.
T Consensus 116 ~~~l~~~lA~l~g------~~-~~v~~~sG~-~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 186 (445)
T 1qgn_A 116 TVVLEEKISALEG------AE-STLLMASGM-CASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP 186 (445)
T ss_dssp HHHHHHHHHHHHT------CS-EEEEESCHH-HHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS
T ss_pred HHHHHHHHHHHhC------CC-cEEEeCCHH-HHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 3588888888874 22 566666665 99999999998 899999997 23333 1111
Q ss_pred cccChHHHHHHHHHHHHhcCCce-eEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 171 IGVLIINDLQQSVAQARSKGITV-RAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~-~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
-|+ +.|++++++ ++ ++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+...+ . . +.
T Consensus 187 --~d~-~~l~~ai~~------~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~-~-~---~~- 248 (445)
T 1qgn_A 187 --ADV-GALELALNQ------KKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLN-Q-K---AL- 248 (445)
T ss_dssp --SCH-HHHHHHHHH------SCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT-C-C---TT-
T ss_pred --CCH-HHHHHHhcc------CCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCccccc-C-C---cc-
Confidence 178 999999987 78 99999999999999988 67888899999999999999986533 1 1 11
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPG 327 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~ 327 (463)
. + +..++++|+||.+ |.+| +++||++ +++++++.+..... .....+.+....+...++
T Consensus 249 ~----~-------g~Div~~S~sK~~-gg~gd~~~G~l~---~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~----- 308 (445)
T 1qgn_A 249 A----L-------GADLVLHSATKFL-GGHNDVLAGCIS---GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMK----- 308 (445)
T ss_dssp T----T-------TCSEEEECTTTTT-TCSSSCCCEEEE---ECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG-----
T ss_pred c----c-------CCEEEEECCcccc-cccccceEEEEE---ECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH-----
Confidence 1 1 1348999999998 6455 5799999 48888888876654 233344544444444432
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccccC----------------CceeEEeeeccCChhhHHHHhhc
Q 041151 328 DISYEQFVRESKGILESLRRRARMMTDGFNSCRNV-VCNFT----------------EGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
.+....+++.++++.+.+.|++.|++ .+..| ..+.++++.+.-...
T Consensus 309 ---------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~-------- 371 (445)
T 1qgn_A 309 ---------TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLL-------- 371 (445)
T ss_dssp ---------GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHH--------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHH--------
Confidence 12223445667788889999888776 34333 123344533431100
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCC--------------------CCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQ--------------------KEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~--------------------~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+.......++..++.++.|+.+.. .-..+.||||++ .|+++.+++.|++++++
T Consensus 372 ----~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 372 ----TTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQALDS 444 (445)
T ss_dssp ----HHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHHhh
Confidence 111122223334777788876531 011368999999 46899999999998864
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.6e-22 Score=196.48 Aligned_cols=283 Identities=10% Similarity=0.078 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------------cC--cee---cCC
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------------FH--TTW---KRQ 169 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------------~g--~~~---~~~ 169 (463)
.++.+++++.+.+..|.. +.|++|+|+++++..++..+ ++||+|+++ .| .++ +.+
T Consensus 34 ~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 108 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAE 108 (379)
T ss_dssp HHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECE
T ss_pred HHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecc
Confidence 355555666655555543 68999999999999988654 699999986 23 233 211
Q ss_pred ---------C-cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccccc
Q 041151 170 ---------Q-IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239 (463)
Q Consensus 170 ---------~-~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~ 239 (463)
. ..+|+ +++++.+++. ++++|++++++||||.+++.+++++|.++|+++|+++|+|++++ ..
T Consensus 109 ~~g~~~~~~~~~~~d~-~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~- 180 (379)
T 3ke3_A 109 RTEDTEAPKPFAPVDI-ETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GC- 180 (379)
T ss_dssp ESSCCSSCCCEECCCH-HHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TT-
T ss_pred ccccccccCCCCCCCH-HHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CC-
Confidence 1 24899 9999999653 79999999999999999999999999999999999999999976 31
Q ss_pred CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh---------------
Q 041151 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--------------- 304 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--------------- 304 (463)
. ...+... + ..+++.|++|++.+.+| +|++++ ++++++.+.....
T Consensus 181 ---~-~~~~~~~--------~---~d~~~~s~~K~l~~~~g--~g~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 240 (379)
T 3ke3_A 181 ---V-WLDMKEL--------G---IDVLISAPQKGWSSTPC--AGLVML---SAAAIKKVESTESNCFSLDLKQWLTIMR 240 (379)
T ss_dssp ---C-CCCHHHH--------T---CSEEEECTTTTTCSCCC--EEEEEE---CHHHHHHHHTCCCSCSTTCHHHHHHHHH
T ss_pred ---c-ccccccc--------C---CCEEEecchhhcCCCCc--eEEEEE---CHHHHHhhhcCCCCceeecHHHHHHHHH
Confidence 1 2233222 1 23788999999843334 899984 8888887764211
Q ss_pred --------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCcccccCCc---eeE
Q 041151 305 --------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRNVVCNFTEG---AMY 372 (463)
Q Consensus 305 --------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g---~~~ 372 (463)
...+++...+.++.++++ ...++ .++++++++++++++.+.|+++ |+.+..+.+ +..
T Consensus 241 ~~~~g~~~~~~t~~~~~~~a~~aal~----------~~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~~~~~~~i 309 (379)
T 3ke3_A 241 AYENGGHAYHATMPTDSLRQFRDAIL----------EAKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAEGFEAPGV 309 (379)
T ss_dssp HHHTTSCCCSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCTTCBCSSE
T ss_pred hhhccCCCCCCCCCHHHHHHHHHHHH----------HHHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCccccCceE
Confidence 012555566666656652 12222 4678888999999999999988 887765542 222
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC--CCCCcEEEEEec--CCcCcHHHHHHHHHHHHH
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ--KEGIFHLRTTIL--PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~ 448 (463)
.. +..+.. +... ...|.++||.+.+|..+.. +.+.+.+|+|+. ++++|+++++++|+++++
T Consensus 310 ~~--~~~~~~------------~~~~-~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~ 374 (379)
T 3ke3_A 310 VV--SYTERD------------DMHK-GSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALD 374 (379)
T ss_dssp EE--EECSCH------------HHHS-SHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHH
T ss_pred EE--EccCCc------------chHH-HHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH
Confidence 22 122211 1111 3557788999999986643 223468999998 788999999999999988
Q ss_pred HHH
Q 041151 449 EFM 451 (463)
Q Consensus 449 ~~~ 451 (463)
++.
T Consensus 375 ~~~ 377 (379)
T 3ke3_A 375 EVL 377 (379)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=203.17 Aligned_cols=273 Identities=12% Similarity=0.099 Sum_probs=179.0
Q ss_pred CccCCC--CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c-------------
Q 041151 101 GAYSDS--RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F------------- 162 (463)
Q Consensus 101 ~~Y~~~--~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~------------- 162 (463)
+.|+.. ....++++.++++++ .+++++|+|+++++..++.+++ ++||+|+++ +
T Consensus 48 ~~y~~~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~al~~l~-~~gd~vi~~~~~~~~~~~~~~~~~~~ 118 (412)
T 2cb1_A 48 YVYARQKDPTAKALEERLKALEG--------ALEAVVLASGQAATFAALLALL-RPGDEVVAAKGLFGQTIGLFGQVLSL 118 (412)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTCCHHHHHHHHHTTTT
T ss_pred cCcCCCCChHHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 466643 346788888888874 3489999999999999999997 899999997 1
Q ss_pred -CceecCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCC
Q 041151 163 -HTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 163 -g~~~~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~ 241 (463)
|.++ ....+|+ +.|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|+.+.+ .
T Consensus 119 ~g~~~--~~~~~~~-~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~-~ 185 (412)
T 2cb1_A 119 MGVTV--RYVDPEP-EAVREALSA------KTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFGAAGA-L 185 (412)
T ss_dssp TTCEE--EEECSSH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGTTTT-S
T ss_pred cCCEE--EEECCCH-HHHHHHhcc------CCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCccccc-c
Confidence 2222 1112357 999998876 8999999999999999997 88888899999999999999987522 1
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh--------------------------hH
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP--------------------------KT 295 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~--------------------------~~ 295 (463)
.... . . +..+++.|+||++ +.||.|+|++++.+ +. ++
T Consensus 186 ---~~~~-~----~-------~~di~~~S~~K~~-~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 248 (412)
T 2cb1_A 186 ---CRPL-A----W-------GAHVVVESLTKWA-SGHGSVLGGAVLSR-ETELWRNYPQFLQPDLKGQIPWEALRARCF 248 (412)
T ss_dssp ---CCGG-G----G-------TCSEEEEETTTTT-TCSSCCCCEEEEEC-CCSGGGGSGGGGCC-------HHHHGGGHH
T ss_pred ---CCcc-c----c-------CCeEEEECCcccc-cCCCCcEEEEEEec-cccccccccccccccccccchhhccchHHH
Confidence 1111 1 1 2458999999999 78999999998732 11 34
Q ss_pred HHHHHhhh-h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cC-----
Q 041151 296 VDEIYKIA-S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FT----- 367 (463)
Q Consensus 296 ~~~l~~~~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~----- 367 (463)
.+.++... . .....++.....+...++ .+....++..++.+.+.+.|.+.|++..+ .|
T Consensus 249 ~~~~r~~~~~~~g~~~~~~~a~~~~~~l~--------------~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~ 314 (412)
T 2cb1_A 249 PERVRTLGLSLCGMALSPFNAYLLFQGLE--------------TVALRVARMSETARFLAERLQGHPKVKALRYPGLPED 314 (412)
T ss_dssp HHHHHHHHTTTTCCCCCHHHHHHHHHHGG--------------GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTC
T ss_pred HHHHHHHHHHhcCCCCChHHhHHHHcCCc--------------hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCC
Confidence 44444433 2 122223333333332321 11223444567788889999888887743 22
Q ss_pred ------------CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC---------CCC------CC
Q 041151 368 ------------EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG---------FGQ------KE 420 (463)
Q Consensus 368 ------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~---------f~~------~~ 420 (463)
.+++ +. +.+. +.+.+...+.+.||.+ .++. +.. ++
T Consensus 315 p~~~~~~~~~~~~~~i-v~--~~~~--------------~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~ 376 (412)
T 2cb1_A 315 PAHRNARKYLASGGPI-LT--LDLG--------------DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKE 376 (412)
T ss_dssp TTHHHHHHHCSSSCSE-EE--EECS--------------SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCH
T ss_pred ccHHHHHHhCCCCceE-EE--EEeC--------------CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCH
Confidence 2233 33 2321 2233567788899998 7642 210 00
Q ss_pred --------CCcEEEEEec--CCcCcHHHHHHHHH
Q 041151 421 --------GIFHLRTTIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 421 --------~~~~lRis~~--~~~e~i~~~~~~l~ 444 (463)
..+.+|+|++ .++++++.+.++|+
T Consensus 377 ~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~ 410 (412)
T 2cb1_A 377 EARLQAGVTPGLVRVSVGLEDPLDLLALFEEALE 410 (412)
T ss_dssp HHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 1468999999 45555555555554
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=207.66 Aligned_cols=317 Identities=11% Similarity=0.002 Sum_probs=210.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEE---EcCCcHHHHHHHHHHHhcCC----
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIF---LTDGASKGVMQTLNCVIRGE---- 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~---~t~G~~~al~~~~~~l~~~~---- 154 (463)
++.+.+++.+++.. ....|....+..++++.+.+++.+.+|.+.+++++. +|+|+++++..++.++. .+
T Consensus 69 ~~~v~~~l~~~~~~---~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~-~~~~~~ 144 (502)
T 3hbx_A 69 EPECDKLIMSSINK---NYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK-RKWQNK 144 (502)
T ss_dssp CHHHHHHHHHTTTC---BTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH-HHHHHH
T ss_pred CHHHHHHHHHHhcc---CCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH-HHHhHH
Confidence 77888888877765 223333333467888899999988888775566554 48999999999998876 44
Q ss_pred ----CC-----EEEEc-------------cCcee---c--CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 155 ----GD-----GVVLL-------------FHTTW---K--RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 155 ----gd-----~Vlvp-------------~g~~~---~--~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
|+ .|+++ .|+.+ + .+.+.+|+ +.|++++.+ ++++|++++|+||||.
T Consensus 145 ~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~-~~l~~~i~~------~t~~v~~~~~~n~tG~ 217 (502)
T 3hbx_A 145 RKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP-QQAVDMVDE------NTICVAAILGSTLNGE 217 (502)
T ss_dssp HHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCH-HHHHHHCCT------TEEEEEEEBSCTTTCC
T ss_pred HHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCH-HHHHHHHhh------CCEEEEEecCCCCCCc
Confidence 76 88887 56655 2 23488999 999999987 7999999999999999
Q ss_pred CCCHHHHHHHHHHhhhC------CeEEEeccccccccc---CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC
Q 041151 208 CLSEANLREILRFCYQE------NLVLLGDEVYQQNIY---QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278 (463)
Q Consensus 208 ~~s~~~l~~l~~~a~~~------~~~vi~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 278 (463)
+.+ +++|.++|+++ ++++++|++|+.+.. .+..+ ..+ ...+-.++..|.+|++ .
T Consensus 218 ~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~-~~~-----------~~~~~D~v~~s~hK~l--~ 280 (502)
T 3hbx_A 218 FED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE-WDF-----------RLPLVKSINVSGHKYG--L 280 (502)
T ss_dssp BCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-CST-----------TSTTEEEEEEETTTTT--C
T ss_pred ccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc-ccc-----------CCCCceEEEECccccc--C
Confidence 977 66677778888 999999999986531 11111 111 1112346778999975 3
Q ss_pred CCceeEEEEecCCChhHHHHHHhhh-hh--------c--ccC---ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 279 CGQRGGYFEMTNIPPKTVDEIYKIA-SI--------A--LSP---NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 279 ~G~R~G~~~~~~~~~~~~~~l~~~~-~~--------~--~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
++.++||+++ .+++.+....... .. . .+. ....+.++...+ ..+....+.++
T Consensus 281 ~p~g~G~~~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~l------------g~~g~~~~~~~ 346 (502)
T 3hbx_A 281 VYAGIGWVIW--RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRL------------GHEGYRNVMEN 346 (502)
T ss_dssp CCSSCEEEEE--SSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred CCCCeEEEEE--eCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence 6677999887 5555542221111 10 0 111 112222222221 12234556777
Q ss_pred HHHHHHHHHHHhhcCCCcccccC--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 041151 345 LRRRARMMTDGFNSCRNVVCNFT--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422 (463)
Q Consensus 345 ~~~~~~~l~~~L~~~pg~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 422 (463)
..++++++.+.|++++++.+..+ ..++ +++++.-... -+...+.+.|.++||.+..........+.
T Consensus 347 ~~~~a~~l~~~L~~~~~~~~~~~~~~~~~-v~f~~~~~~~-----------~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~ 414 (502)
T 3hbx_A 347 CRENMIVLREGLEKTERFNIVSKDEGVPL-VAFSLKDSSC-----------HTEFEISDMLRRYGWIVPAYTMPPNAQHI 414 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEECSCSSSSSE-EEEEESSCSS-----------CCHHHHHHHHHTTTCBCCEEECCTTCTTC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCceE-EEEEecCCCc-----------CCHHHHHHHHHhCCcEEeeccCCcccCCc
Confidence 88888999999999977888765 4444 4433431111 12223456677889987543332222345
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
.++||+++ .+.++++.+++.|+++++++.+
T Consensus 415 ~~lRisv~~~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 415 TVLRVVIREDFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 68999999 7889999999999999987754
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.5e-24 Score=214.12 Aligned_cols=312 Identities=11% Similarity=0.057 Sum_probs=187.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++... ....|+. +.+.++++.+.+..+ .+++|++|+|+++++..+++.... .+++.|++
T Consensus 71 ~p~v~~A~~~~~~~~--~~~~~~~-----~~~~~la~~l~~~~~---~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~ 140 (429)
T 4e77_A 71 HPAIRQAVIEAVERG--LSFGAPT-----EMEVKMAQLVTDLVP---TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIK 140 (429)
T ss_dssp CHHHHHHHHHHHTTC--SCCSSCC-----HHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHHhC--cccCCCC-----HHHHHHHHHHHhhCC---CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEE
Confidence 789999999888762 2223322 344445555544433 478999999999999999985421 24566666
Q ss_pred c----cCcee---------------cC-CCc------------ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 161 L----FHTTW---------------KR-QQI------------GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 161 p----~g~~~---------------~~-~~~------------~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
. +|... +. .+. ..|+ +.|++.+++. +.++ ++++++|+||+|.+
T Consensus 141 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~le~~l~~~---~~~~-~~vi~ep~~~~~g~ 215 (429)
T 4e77_A 141 FEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDL-ASVRQAFEQY---PQEV-ACIIVEPVAGNMNC 215 (429)
T ss_dssp ETTCCCC------------------CCCTTSCGGGGTTEEEECTTCH-HHHHHHHHHS---TTTE-EEEEECSSBCTTSC
T ss_pred EcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCH-HHHHHHHHhc---CCCE-EEEEECCccCCCCC
Confidence 4 22110 00 000 0178 9999998852 1134 44567787776644
Q ss_pred CC--HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 209 LS--EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 209 ~s--~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
+. ++.+++|.++|++||+++|+||+|.++ .. +. .... . .++. .. -+.||||++ + +|+|+||+
T Consensus 216 ~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~-g~-~~~~-~---~~~~--~p-----di~t~sK~~-~-~G~~~G~~ 279 (429)
T 4e77_A 216 IPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RV-AL-AGAQ-D---YYHV--IP-----DLTCLGKII-G-GGMPVGAF 279 (429)
T ss_dssp BCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TT-BT-TCHH-H---HTTC--CC-----SEEEEEGGG-G-TTSCCEEE
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccCc-cc-Cc-chHH-H---hcCC--CC-----Ceeeecccc-c-CCCCeEEE
Confidence 44 445999999999999999999999987 31 22 1111 1 1111 11 135899999 6 79999999
Q ss_pred EecCCChhHHHHHHhh----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 041151 287 EMTNIPPKTVDEIYKI----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS---- 358 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~---- 358 (463)
+ +++++++.+... ...+++.+++.+.++.++|+.. + .+...++++++.+.+.+.|++
T Consensus 280 ~---~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~-----------~-~~~~~~~~~~~~~~l~~~L~~~~~~ 344 (429)
T 4e77_A 280 G---GRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEI-----------S-QVGVYETLTELTDSLATGLRHAAKE 344 (429)
T ss_dssp E---ECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHH-----------T-STTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E---ECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHH-----------H-hcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 588888887653 2246678999998888876411 0 012333444455555554443
Q ss_pred CCCcccccCCceeEEeeeccCCh---hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCc
Q 041151 359 CRNVVCNFTEGAMYSFPQIRLPP---KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEED 435 (463)
Q Consensus 359 ~pg~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~ 435 (463)
. ++....+..+.++|+.+.-.. .+... .........++ ...|.++||.+.|+.. ..+|+++..++++
T Consensus 345 ~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~Gi~v~~~~~-------~~~~~~~~~t~e~ 414 (429)
T 4e77_A 345 E-NIPLVVNHVGGMFGLFFTNADTVTCYQDV-MNCDVERFKRF-FHLMLEEGVYLAPSAF-------EAGFMSLAHSNED 414 (429)
T ss_dssp T-TCCCEEEEETTEEEEECCSSSCCCSHHHH-HTSCHHHHHHH-HHHHHHTTEECCSSTT-------SCEECCTTCCHHH
T ss_pred C-CCceEEEEeeeEEEEEEccCccccccccc-ccccHHHHHHH-HHHHHHCCeEEeecCC-------CCEEEeccCCHHH
Confidence 3 333333344566665443210 00000 00000001344 4445677999998642 1467777789999
Q ss_pred HHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDE 449 (463)
Q Consensus 436 i~~~~~~l~~~l~~ 449 (463)
+++++++|++++++
T Consensus 415 i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 415 IQKTVNAARRCFAK 428 (429)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=208.52 Aligned_cols=307 Identities=16% Similarity=0.134 Sum_probs=195.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH---HhcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC---VIRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~---l~~~~gd~V 158 (463)
|+.+++++.+.+... . .|+ +..++++++++++.++++ .+++|++++|+++++..+++. +. ++ +.|
T Consensus 70 ~p~v~~a~~~~~~~~--~--~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~~al~~ar~~~-~~-~~v 137 (424)
T 2e7u_A 70 HPKVLARVRETLERG--L--TFG---APSPLEVALAKKVKRAYP---FVDLVRFVNSGTEATMSALRLARGYT-GR-PYI 137 (424)
T ss_dssp CHHHHHHHHHHHHTC--S--CCS---SCCHHHHHHHHHHHHHCT---TCCEEEEESSHHHHHHHHHHHHHHHH-CC-CEE
T ss_pred CHHHHHHHHHHHHhC--C--CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHHHHHHHHHHhh-CC-CEE
Confidence 789999999888751 1 232 234677777777766643 578999999999999999986 54 44 555
Q ss_pred EEc----cCcee-----c-----------C---------CCcc---cChHHHHHHHHHHHHhcCCceeEEEEECCCCC-C
Q 041151 159 VLL----FHTTW-----K-----------R---------QQIG---VLIINDLQQSVAQARSKGITVRAMVIINPGNP-T 205 (463)
Q Consensus 159 lvp----~g~~~-----~-----------~---------~~~~---~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NP-t 205 (463)
+++ +|... . . .... .|+ +.|++.+++.. .++++ ++++|+|+ |
T Consensus 138 i~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~-~~le~~l~~~~---~~~~~-vi~ep~~~~~ 212 (424)
T 2e7u_A 138 VKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDP-EGLREVLKRRG---EEIAA-IIFEPVVGNA 212 (424)
T ss_dssp EEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCH-HHHHHHHHHHG---GGEEE-EEECSSBCTT
T ss_pred EEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCH-HHHHHHHHhCC---CCEEE-EEEeCCCCCC
Confidence 554 22110 0 0 0000 378 99999987521 14554 55677665 8
Q ss_pred ccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeE
Q 041151 206 GQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG 284 (463)
Q Consensus 206 G~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 284 (463)
|.+. +.+.+++|.++ ++||++||+||+|.++.. +. .... . .++. .. . +.||||++ + +|+|+|
T Consensus 213 G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~--g~-~~~~-~---~~~~--~~--d---i~s~sK~l-~-~G~~~G 275 (424)
T 2e7u_A 213 GVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRL--AF-GGAT-E---LLGL--KP--D---LVTLGKIL-G-GGLPAA 275 (424)
T ss_dssp SCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTS--ST-THHH-H---HHTC--CC--S---EEEECGGG-G-TTSSCE
T ss_pred CCcCCCHHHHHHHHHH-HHcCCEEEEecCcccccc--ch-hHHH-H---HhCC--Cc--c---hhhhhhhh-h-CCcceE
Confidence 9765 79999999999 999999999999997632 21 1111 1 1111 12 1 24999999 6 599999
Q ss_pred EEEecCCChhHHHHHHhhh----hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Q 041151 285 YFEMTNIPPKTVDEIYKIA----SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC- 359 (463)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 359 (463)
|++ +++++++.+.... ..+++.+++.+.++.++|+ ..++.+++.++++++++++.+.|+++
T Consensus 276 ~~~---~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~-----------~~~~~~~~~~~~~~~~~~l~~~L~~~~ 341 (424)
T 2e7u_A 276 AYA---GRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLE-----------LLEENPGYYAYLEDLGARLEAGLKEVL 341 (424)
T ss_dssp EEE---ECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHH-----------HHHHCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE---EcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHH-----------HHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999 4888888776521 2356778889888887763 22111346677777778888777663
Q ss_pred --CCcc-cccCCceeEEeeeccC-Ch-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcC
Q 041151 360 --RNVV-CNFTEGAMYSFPQIRL-PP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEE 434 (463)
Q Consensus 360 --pg~~-~~~~~g~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e 434 (463)
.++. ...+.| .++|+.+.- +. .+.+. ......+..++. ..|.++||.+.|+.. ..+|+++..+++
T Consensus 342 ~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~Gv~v~~~~~-------~~~~~~~~~t~~ 411 (424)
T 2e7u_A 342 KEKGLPHTVNRVG-SMITVFFTEGPVVTFQDA-RRTDTELFKRFF-HGLLDRGIYWPPSNF-------EAAFLSVAHREE 411 (424)
T ss_dssp HHTTCCCEEEEET-TEEEEESSSSCCCSHHHH-TTSCHHHHHHHH-HHHHTTTEECCSSSS-------SCEECCTTCCHH
T ss_pred HhCCCceEEEeec-eEEEEEEeCCCCcchhhh-cccCHHHHHHHH-HHHHHCCeEEeccCC-------CceEeeccCCHH
Confidence 1332 234444 467755531 00 00000 000000123444 445578999999742 147888778999
Q ss_pred cHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKF 446 (463)
Q Consensus 435 ~i~~~~~~l~~~ 446 (463)
++++++++|+++
T Consensus 412 ~i~~~l~~l~~~ 423 (424)
T 2e7u_A 412 DVEKTLEALRKA 423 (424)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=200.51 Aligned_cols=270 Identities=10% Similarity=0.048 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~ 170 (463)
..+|++.++++++ .+++++++|+++++..++.+++ ++||+|+++ .|.++ ..+
T Consensus 68 ~~~l~~~la~~~g--------~~~~~~~~sGt~A~~~al~~~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~- 137 (392)
T 3qhx_A 68 RTALEAALAAVED--------AAFGRAFSSGMAAADCALRAML-RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA- 137 (392)
T ss_dssp HHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC-
T ss_pred HHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC-
Confidence 4577888887764 3478888888999999999997 899999997 23333 111
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
..|+ +.|++++++ ++++|++++|+||||.+.+ +++|+++|+++|+++|+|++|+.+.+ . . .. .
T Consensus 138 -~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~-~---~~-~ 200 (392)
T 3qhx_A 138 -LADL-DAVRAAIRP------TTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-Q-Q---PL-S 200 (392)
T ss_dssp -TTCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-C-C---GG-G
T ss_pred -CCCH-HHHHHhhCC------CCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-C-C---hH-H
Confidence 1178 999999886 8999999999999999987 88888899999999999999986532 1 1 11 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCC-ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCC
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
+ +..+++.|+||.+ |.+| +|+||++. .++++++.+..... .+...++..+.++...++.
T Consensus 201 ----~-------~~di~~~S~sK~l-g~~g~~~~G~v~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~----- 261 (392)
T 3qhx_A 201 ----L-------GADVVLHSTTKYI-GGHSDVVGGALVT--NDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT----- 261 (392)
T ss_dssp ----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-----
T ss_pred ----h-------CCcEEEEcCcccc-CCCCCceEEEEEE--CcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-----
Confidence 1 1348999999999 7677 89999995 34688888877765 5667777777777666541
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cCC----------------ceeEEeeeccCChhhHHHHhhcC
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FTE----------------GAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
+....++..++.+.+.+.|++.|++..+ .|. .|..+++.+ +.+.
T Consensus 262 ---------l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l--~~~~-------- 322 (392)
T 3qhx_A 262 ---------LVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRM--RAGR-------- 322 (392)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE--TTCH--------
T ss_pred ---------HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEe--CCcH--------
Confidence 2223445667777788888877665322 111 133455434 3210
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCC---C--------------CCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQ---K--------------EGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~---~--------------~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
...+.+...++..|+.+..|+.+.. + -..+.+|||++. ++.++.++.|.+++
T Consensus 323 --~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~--e~~~~~i~~l~~al 391 (392)
T 3qhx_A 323 --TAAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI--EDVADLLDDLKQAL 391 (392)
T ss_dssp --HHHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred --HHHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEecc--CCHHHHHHHHHHHh
Confidence 0222233446666788888876531 0 124579999994 47777777777665
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-22 Score=201.08 Aligned_cols=269 Identities=12% Similarity=0.125 Sum_probs=174.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c--------------Ccee-cC
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F--------------HTTW-KR 168 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~--------------g~~~-~~ 168 (463)
....++++.++++++ .+ +.++++++++++..++.+++ ++||+|+++ + |.++ ..
T Consensus 65 ~~~~~l~~~la~~~g------~~--~~i~~~sG~~a~~~~l~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (398)
T 1gc0_A 65 PTLNLLEARMASLEG------GE--AGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV 135 (398)
T ss_dssp HHHHHHHHHHHHHHT------CS--EEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhC------CC--cEEEECCHHHHHHHHHHHHh-cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEE
Confidence 345678888888774 22 44445555799999999997 899999997 2 2222 11
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
+ ..|+ +.+++.+++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|..+.+. . ++
T Consensus 136 ~--~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~--~---~~ 198 (398)
T 1gc0_A 136 D--MADL-QALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQ--R---PL 198 (398)
T ss_dssp C--TTCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHC--C---GG
T ss_pred C--CCCH-HHHHHhcCC------CCeEEEEECCCCCCccccc---HHHHHHHHHHcCCEEEEECCCcccccC--C---ch
Confidence 1 1377 999998876 8999999999999999987 788888999999999999999976551 1 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHH-HHHhhhhh--cccCChHHHHHHHHhcCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVD-EIYKIASI--ALSPNVPAQIFMGLMVNPL 324 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~-~l~~~~~~--~~~~~~~~q~~~~~~l~~~ 324 (463)
. + + ..+++.|+||++ +.+|+|+ ||++. +++.++ .+...... +.+.+.+.+.++...++.
T Consensus 199 -~----~----~---~d~~~~S~sK~~-~~~~~~~~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 261 (398)
T 1gc0_A 199 -E----L----G---ADLVVHSATKYL-SGHGDITAGIVVG---SQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT- 261 (398)
T ss_dssp -G----G----T---CSEEEEETTTTT-TCSSSCCCEEEEE---CHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-
T ss_pred -h----h----C---ceEEEECCcccc-CCCCCCeEEEEEE---ChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-
Confidence 1 1 1 348999999999 8899998 99984 776655 55544432 345677777776666531
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--------------ccccC----CceeEEeeeccCChhhHHH
Q 041151 325 KPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV--------------VCNFT----EGAMYSFPQIRLPPKAIEA 386 (463)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~--------------~~~~~----~g~~~~~~~~~~~~~~~~~ 386 (463)
.....++..++.+.+.+.|++.|++ .+..+ .++++.+ .+. .
T Consensus 262 -------------~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~--~----- 320 (398)
T 1gc0_A 262 -------------LNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAF-ELK--G----- 320 (398)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEE-EET--T-----
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEE-EEC--C-----
Confidence 1223445566666667777664332 22222 3555554 232 1
Q ss_pred HhhcCCCChHHHHHHHHHhcCeEeeC---CCCCC------------CC--------CCCcEEEEEecCCcCcHHHHHHHH
Q 041151 387 AKRAGKVPDVFYCLRLLEATGISTVP---GSGFG------------QK--------EGIFHLRTTILPAEEDMPAIMESF 443 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~ll~~~gI~v~p---g~~f~------------~~--------~~~~~lRis~~~~~e~i~~~~~~l 443 (463)
..+.+..++.+.|+.++. |+.+. .+ -..+++|||++. ++.++.++.|
T Consensus 321 --------~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--~~~~~~i~~l 390 (398)
T 1gc0_A 321 --------GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGL--EDIDDLLADV 390 (398)
T ss_dssp --------HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHH
T ss_pred --------CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCc--CCHHHHHHHH
Confidence 223456778888988776 32210 00 013689999994 3444555555
Q ss_pred HHHHHH
Q 041151 444 KKFNDE 449 (463)
Q Consensus 444 ~~~l~~ 449 (463)
.+++++
T Consensus 391 ~~al~~ 396 (398)
T 1gc0_A 391 QQALKA 396 (398)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=207.06 Aligned_cols=290 Identities=12% Similarity=0.141 Sum_probs=196.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
++.+.+++.+.+.. ..|.+..+..++|++++++++ .+++++++|+++++..++.++ + ++||+|++
T Consensus 15 ~~~v~~a~~~~~~~-----~~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~-~~gd~Vi~ 80 (367)
T 3nyt_A 15 KDKIDAGIQRVLRH-----GQYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGV-GPGDEVIT 80 (367)
T ss_dssp HHHHHHHHHHHHHH-----CCCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhc-----CCccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCC-CCcCEEEE
Confidence 67778888777766 245566678899999999985 248999999999999999999 7 89999999
Q ss_pred c-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+ .|.++ ..+.+.+|+ +.|++++++ ++++|+ |+||||...+ +++|.++|+
T Consensus 81 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~---~~~~~G~~~~---~~~i~~la~ 147 (367)
T 3nyt_A 81 PGFTYVATAETVALLGAKPVYVDIDPRTYNLDP-QLLEAAITP------RTKAII---PVSLYGQCAD---FDAINAIAS 147 (367)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCG-GGTGGGCCT------TEEEEC---CBCGGGCCCC---HHHHHHHHH
T ss_pred CCCccHHHHHHHHHcCCEEEEEecCCccCCcCH-HHHHHhcCc------CCcEEE---eeCCccChhh---HHHHHHHHH
Confidence 7 56665 223478999 999999876 789887 8899998766 777888899
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
++|++||+|++|+.+....+..... + . .+++.|| ||.+ +.+|. +|+++. .++++.+.+.
T Consensus 148 ~~~~~li~D~a~~~g~~~~~~~~~~-------~----~----di~~~Sf~~~K~l-~~~g~-gg~~~~--~~~~l~~~~~ 208 (367)
T 3nyt_A 148 KYGIPVIEDAAQSFGASYKGKRSCN-------L----S----TVACTSFFPSAPL-GCYGD-GGAIFT--NDDELATAIR 208 (367)
T ss_dssp HTTCCBEEECTTTTTCEETTEETTS-------S----S----SEEEEECCTTSSS-CCSSC-CEEEEE--SCHHHHHHHH
T ss_pred HcCCEEEEECccccCCeECCeeccC-------C----C----CEEEEECCCCCcC-CCcCc-eeEEEe--CCHHHHHHHH
Confidence 9999999999998532211111111 1 1 3788897 8999 76576 889885 4688888887
Q ss_pred hhhhh-------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc-
Q 041151 301 KIASI-------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF- 366 (463)
Q Consensus 301 ~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~- 366 (463)
..... ++..+.+...++...+ +.++...++.+++.+.+.+.|.++ ++.+..
T Consensus 209 ~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l--------------~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~ 273 (367)
T 3nyt_A 209 QIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKL--------------EIFEEEIALRQKVAAEYDLSLKQV-GIGTPFI 273 (367)
T ss_dssp HHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHH--------------HTHHHHHHHHHHHHHHHHHHHHHT-TCCCCCC
T ss_pred HHHhcCCCcCceeeccCcCCCccHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccC-CeeccCC
Confidence 75431 2334444444443332 223345556677777888888877 554432
Q ss_pred CCceeEEe--eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC--------CC---------CCcEEEE
Q 041151 367 TEGAMYSF--PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ--------KE---------GIFHLRT 427 (463)
Q Consensus 367 ~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--------~~---------~~~~lRi 427 (463)
+.+....| +.+..+ +.+.+...|.++||.++++..... .. ....+|+
T Consensus 274 ~~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 339 (367)
T 3nyt_A 274 EVNNISVYAQYTVRMD--------------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSL 339 (367)
T ss_dssp CTTEECCCSSEEEECS--------------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEE
T ss_pred CCCCceeeEEEEEEeC--------------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEc
Confidence 22221111 112222 233345667888999987643110 00 1347999
Q ss_pred Eec--CCcCcHHHHHHHHHHH
Q 041151 428 TIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 428 s~~--~~~e~i~~~~~~l~~~ 446 (463)
++. .+++|++.+++.|+++
T Consensus 340 p~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 340 PMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp CCCTTCCHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 998 7889999998888654
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-22 Score=198.65 Aligned_cols=308 Identities=11% Similarity=0.091 Sum_probs=194.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCC--CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRG--IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGV 158 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g--~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~V 158 (463)
++++++++.+.+.. .|.++.| ..++|++++++++ .++|++|+|+++++..++.++ + ++||+|
T Consensus 11 ~~~v~~a~~~~~~~------~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~-~~gd~V 75 (394)
T 1o69_A 11 GGNELKYIEEVFKS------NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGV-KQDDIV 75 (394)
T ss_dssp -CCHHHHHHHHHHH------TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEE
T ss_pred CHHHHHHHHHHHHc------CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCC-CCCCEE
Confidence 66788888888765 3656567 8899999999985 278999999999999999999 7 899999
Q ss_pred EEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 159 VLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 159 lvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
+++ .|.++ ...++.+|+ +.|++.+++. ..++++|++++ |||...+ +++|.++|
T Consensus 76 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~-~~l~~~i~~~---~~~~~~v~~~~---~~G~~~~---l~~i~~l~ 145 (394)
T 1o69_A 76 LASSFTFIASVAPICYLKAKPVFIDCDETYNIDV-DLLKLAIKEC---EKKPKALILTH---LYGNAAK---MDEIVEIC 145 (394)
T ss_dssp EEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCH-HHHHHHHHHC---SSCCCEEEEEC---GGGCCCC---HHHHHHHH
T ss_pred EECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCH-HHHHHHHhcc---cCCceEEEEEC---CCCChhh---HHHHHHHH
Confidence 997 56655 335677999 9999998751 01489999885 8997655 77888889
Q ss_pred hhCCeEEEeccccc-ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 222 YQENLVLLGDEVYQ-QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 222 ~~~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
+++|++||+|++|+ .+.+ .+....+ + . + +.+.||||.. +++|.|+||+++ .++++++.+.
T Consensus 146 ~~~~~~li~Dea~~~g~~~-~~~~~~~-------~----~--~--~~~~s~s~~K-~l~~~~~G~~~~--~~~~l~~~l~ 206 (394)
T 1o69_A 146 KENDIVLIEDAAEALGSFY-KNKALGT-------F----G--E--FGVYSYNGNK-IITTSGGGMLIG--KNKEKIEKAR 206 (394)
T ss_dssp HHTTCEEEEECTTCTTCEE-TTEETTS-------S----S--S--EEEEECCTTS-SSCCSSCEEEEE--SCHHHHHHHH
T ss_pred HHcCCEEEEECcCccccee-CCccccc-------c----c--C--cEEEEEeCCc-cCCCCCceEEEE--CCHHHHHHHH
Confidence 99999999999998 4444 2211111 1 1 1 4556664333 345779999995 3578888887
Q ss_pred hhhhhcc-c--------------CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 301 KIASIAL-S--------------PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 301 ~~~~~~~-~--------------~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
....... . .+.+...++...+ +++++..++++++++++.+.|.++ +.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l--------------~~l~~~~~~~~~~~~~l~~~L~~~--~~~~ 270 (394)
T 1o69_A 207 FYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM--------------EVLEQRVLKKREIYEWYKEFLGEY--FSFL 270 (394)
T ss_dssp HHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH--------------TTHHHHHHHHHHHHHHHHHHHTTT--EECC
T ss_pred HHHHhccccCccccccccCcccCcCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhccc--cccc
Confidence 7643111 1 1112221211112 223345677888888999999875 5544
Q ss_pred cCC----cee-EEeeeccCChhh-H--HH--H-hhcCC--CChHHHHHHHHHhcCeEeeCCCCCC--CC--CC-------
Q 041151 366 FTE----GAM-YSFPQIRLPPKA-I--EA--A-KRAGK--VPDVFYCLRLLEATGISTVPGSGFG--QK--EG------- 421 (463)
Q Consensus 366 ~~~----g~~-~~~~~~~~~~~~-~--~~--~-~~~~~--~~~~~~~~~ll~~~gI~v~pg~~f~--~~--~~------- 421 (463)
++. +++ ++++.++..... . .. . ...+. ..+.+.+.+.|.++||.+++|..+. .+ ..
T Consensus 271 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~ 350 (394)
T 1o69_A 271 DELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNG 350 (394)
T ss_dssp CCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECS
T ss_pred CCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCCh
Confidence 432 343 345444311000 0 00 0 00000 0023334566778899999985431 00 00
Q ss_pred ------CcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 422 ------IFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 422 ------~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
...+|+.+. .+++|++++++.|+++++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 351 NSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 023444445 8899999999999877643
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-21 Score=198.79 Aligned_cols=331 Identities=10% Similarity=0.036 Sum_probs=212.5
Q ss_pred cHHHH-HHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC-------
Q 041151 82 PADAI-ARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG------- 153 (463)
Q Consensus 82 p~~~~-~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~------- 153 (463)
++.++ +.+..++.. ....|....+..++++++++|+.+.+|.+.+++.+++|+|+++++..++.++. +
T Consensus 108 ~~~~~~e~l~~~~~~---~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~-~~~~~~~~ 183 (511)
T 3vp6_A 108 IIGLAGEWLTSTANT---NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAAR-YKYFPEVK 183 (511)
T ss_dssp HHHHHHHHHHHHHCC---CSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHH-HHHCTHHH
T ss_pred HHHHHHHHHHHHhcc---CCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHH-HHhhhhhh
Confidence 33443 444445543 55678777788899999999999999988767899999999999999888775 3
Q ss_pred -------CCCEEEEc-------------cCc---ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 154 -------EGDGVVLL-------------FHT---TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 154 -------~gd~Vlvp-------------~g~---~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
+++.|+++ .|. ++ .+..+.+|+ +.|++++++....|..+++|++++|+||||
T Consensus 184 ~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~~~~~d~-~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G 262 (511)
T 3vp6_A 184 TKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIP-ADFEAKILEAKQKGYVPFYVNATAGTTVYG 262 (511)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCH-HHHHHHHHHHHHTTCEEEEEEEEBSCSSSC
T ss_pred hcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCCCCccCH-HHHHHHHHHHHhcCCCcEEEEEecCCCCCc
Confidence 56788887 454 44 345688999 999999988655555589999999999999
Q ss_pred cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 207 ~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
.+-+ +++|+++|++||+|+++|++|+......+.....+..+ .. -.+++.+.+|++ +.| ..+|++
T Consensus 263 ~vd~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~--------~~--aDsv~~~~hK~l-~~p-~g~g~l 327 (511)
T 3vp6_A 263 AFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI--------ER--ANSVTWNPHKMM-GVL-LQCSAI 327 (511)
T ss_dssp CBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTG--------GG--CSEEEECTTSTT-CCC-SCCEEE
T ss_pred cccc---HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCC--------cc--CCEEEECccccc-CCC-cCeEEE
Confidence 9954 88899999999999999999987654111111111111 11 125678999998 544 568888
Q ss_pred EecCCChhHHHHHHhhhh-hc-----------------cc----CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 287 EMTNIPPKTVDEIYKIAS-IA-----------------LS----PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~-----------------~~----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
++ .+++++........ .. .. ...+...++..++ ....++++.++
T Consensus 328 ~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~------------g~~gl~~~~~~ 393 (511)
T 3vp6_A 328 LV--KEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK------------GTVGFENQINK 393 (511)
T ss_dssp EE--SSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred EE--eCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH------------hHHHHHHHHHH
Confidence 87 56666555432211 00 00 1112222222221 12345677888
Q ss_pred HHHHHHHHHHHhhcCCCccccc---CCceeEEeeeccCChhhHHH----HhhcCCCChHHHHHHHHHhcCeEeeCCCCCC
Q 041151 345 LRRRARMMTDGFNSCRNVVCNF---TEGAMYSFPQIRLPPKAIEA----AKRAGKVPDVFYCLRLLEATGISTVPGSGFG 417 (463)
Q Consensus 345 ~~~~~~~l~~~L~~~pg~~~~~---~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~ 417 (463)
..++.+++.+.|++.||+++.. |..+.+.| ++ .|...-+. ............+.+.|.++|+.+.. ..+.
T Consensus 394 ~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f-~~-~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~ 470 (511)
T 3vp6_A 394 CLELAEYLYAKIKNREEFEMVFNGEPEHTNVCF-WY-IPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQ 470 (511)
T ss_dssp HHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEE-EE-CCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEE-EE-eCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEe
Confidence 8999999999999989998875 55665544 22 23221000 00000000112234556667865543 1111
Q ss_pred CCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 418 ~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~ 450 (463)
. .+.+++|++++ .+.++++.+++.|+++.+.+
T Consensus 471 ~-~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 471 G-DKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp T-TEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred C-CceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 23347999994 68899999999988876654
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-22 Score=199.35 Aligned_cols=266 Identities=11% Similarity=0.093 Sum_probs=179.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCC
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQ 169 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~ 169 (463)
...+|++.++++++ . +++++++++++++..++.+++ ++||+|+++ .|.++ ..+
T Consensus 60 ~~~~l~~~la~~~g------~--~~~i~~~sG~~ai~~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 130 (389)
T 3acz_A 60 TVEQFEEMVCSIEG------A--AGSAAFGSGMGAISSSTLAFL-QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLID 130 (389)
T ss_dssp HHHHHHHHHHHHHT------C--SEEEEESSHHHHHHHHHTTTC-CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 45688889988874 2 256666667799999999987 899999997 23333 111
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
..|+ +.+++.+++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..+.+ . . ++.
T Consensus 131 --~~d~-~~l~~~i~~------~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~-~-~---~~~ 193 (389)
T 3acz_A 131 --TSDV-EKVKAAWKP------NTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCF-L-K---PLE 193 (389)
T ss_dssp --TTCH-HHHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-C-C---GGG
T ss_pred --CCCH-HHHHHhcCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-c-C---ccc
Confidence 1478 999998876 7999999999999999997 78888899999999999999987643 1 1 111
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCCh-hHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPP-KTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~-~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
+ +..+++.|+||++ +.+|.|+ ||++. ++ ++++.+..... .+.+.+...+.++...++.
T Consensus 194 -----~-------~~di~~~S~sK~~-~~~~~~~~G~v~~---~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~--- 254 (389)
T 3acz_A 194 -----L-------GADIALHSVSKYI-NGHGDVIGGVSSA---KTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT--- 254 (389)
T ss_dssp -----T-------TCSEEEEETTTTT-TCSSCCCCEEEEE---SSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT---
T ss_pred -----c-------CCeEEEECChhhc-cCCCCceeEEEEE---CcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH---
Confidence 1 2358999999999 8899998 99995 66 88888877664 4455566666666666541
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcccccC----CceeEEeeeccCChhhHHHHh
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSC--------------RNVVCNFT----EGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--------------pg~~~~~~----~g~~~~~~~~~~~~~~~~~~~ 388 (463)
.....++..++.+.+.+.|++. |++.+..+ .|+++.+ .+. .
T Consensus 255 -----------l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~-~l~--~------- 313 (389)
T 3acz_A 255 -----------LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLF-EMK--S------- 313 (389)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EES--S-------
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEE-EEC--C-------
Confidence 1112223334444444444443 33333221 2444433 232 1
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeC---C------CCCCCC--------------CCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVP---G------SGFGQK--------------EGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~p---g------~~f~~~--------------~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.+.+..++.+.||.+++ | ..+... -..+++|||++. ++.++.++.|.+
T Consensus 314 -------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--~~~~~li~~l~~ 384 (389)
T 3acz_A 314 -------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI--ENVDDIIADLKQ 384 (389)
T ss_dssp -------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHH
T ss_pred -------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHH
Confidence 22355778888998877 3 222110 013689999995 378888888888
Q ss_pred HHH
Q 041151 446 FND 448 (463)
Q Consensus 446 ~l~ 448 (463)
+++
T Consensus 385 al~ 387 (389)
T 3acz_A 385 ALE 387 (389)
T ss_dssp HHT
T ss_pred HHh
Confidence 774
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-21 Score=199.83 Aligned_cols=314 Identities=11% Similarity=0.078 Sum_probs=204.0
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC--------CC-----C-EEEEc---
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG--------EG-----D-GVVLL--- 161 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--------~g-----d-~Vlvp--- 161 (463)
....|....+...+++++.+++.+..|.+.+++++++|+|+++++..++.++. . +| + .|+++
T Consensus 120 ~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~-~~~~~~~~~~G~~~~~~~~v~~s~~~ 198 (504)
T 2okj_A 120 NMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAAR-YKYFPEVKTKGMAAVPKLVLFTSEQS 198 (504)
T ss_dssp BSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHH-HHHCTTHHHHCGGGSCCEEEEEETTS
T ss_pred CCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHH-HHHhhHHhhcCccccCCeEEEECCcc
Confidence 33456555556778888888888888876547899999999999999998874 3 56 6 67776
Q ss_pred ----------cCc---ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 ----------FHT---TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 ----------~g~---~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|. ++ .+.++.+|+ +.|++++++...+|.++++|++++|+||||.+.+ +++|+++|+++
T Consensus 199 h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~-~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~---l~~I~~la~~~ 274 (504)
T 2okj_A 199 HYSIKKAGAALGFGTDNVILIKCNERGKIIP-ADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP---IQEIADICEKY 274 (504)
T ss_dssp CTHHHHHHHHTTSCGGGEEEECBCTTSCBCH-HHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC---HHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCcccEEEEecCCCCCCCH-HHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc
Confidence 333 44 335788999 9999999875555556899999999999999866 77888899999
Q ss_pred CeEEEecccccccccCCCCCc-cchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPF-VSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
|+++++|++|+.+.+. .... ..+. ++ .. -.+++.|++|++ +.| .++|++++ .++++++......
T Consensus 275 g~~lhvD~a~~~~~~~-~~~~~~~~~----g~----~~--~D~i~~~~hK~~-~~p-~~~g~l~~--~~~~~~~~~~~~~ 339 (504)
T 2okj_A 275 NLWLHVDAAWGGGLLM-SRKHRHKLN----GI----ER--ANSVTWNPHKMM-GVL-LQCSAILV--KEKGILQGCNQMC 339 (504)
T ss_dssp TCEEEEEETTGGGGGG-CTTTGGGGT----TG----GG--CSEEEECTTSTT-CCC-SCCEEEEE--SSTTHHHHHHCCC
T ss_pred CCEEEEehhhhhHHHh-CHhhHhhcC----Cc----cc--CCEEEECchhhc-CCC-cceEEEEE--ECHHHHHHHhcCC
Confidence 9999999999987652 1111 1111 11 11 126778999988 644 68999997 4455555432211
Q ss_pred -hhcc---------------------cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 304 -SIAL---------------------SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 304 -~~~~---------------------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
.... ....+.+.++..++. ....+++.++..++++++.+.|++.||
T Consensus 340 ~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg------------~~g~~~~~~~~~~~a~~l~~~L~~~~~ 407 (504)
T 2okj_A 340 AGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG------------TVGFENQINKCLELAEYLYAKIKNREE 407 (504)
T ss_dssp CSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred CccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1110 012334444433331 223455677788899999999999889
Q ss_pred ccccc---CCceeEEeeeccCChhhH------HHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--
Q 041151 362 VVCNF---TEGAMYSFPQIRLPPKAI------EAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-- 430 (463)
Q Consensus 362 ~~~~~---~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-- 430 (463)
+++.. |..+++.|..+ |.... +-... .......+.+.|.+.|+.+..+..+.. ..+++|++++
T Consensus 408 ~~~~~~~~p~~~~v~f~~~--~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~G~~~~~~~~~~~--~~~~lRis~~~~ 481 (504)
T 2okj_A 408 FEMVFNGEPEHTNVCFWYI--PQSLRGVPDSPQRREK--LHKVAPKIKALMMESGTTMVGYQPQGD--KANFFRMVISNP 481 (504)
T ss_dssp EEESSSSCCSSSCEEEEEC--CGGGSSCCCCHHHHHH--HTTHHHHHHHHHHHHTSCEEEEEEETT--EEEEEEECCCCT
T ss_pred EEEEecCCCCeEEEEEEEe--CccccccccchhhHHH--HHHHHHHHHHHHHhCCcEEEEeeEECC--ceEEEEEEeCCC
Confidence 98874 67777766322 21100 00000 000112233445567854433222321 1248999997
Q ss_pred -CCcCcHHHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~~~ 450 (463)
++++++++++++|+++++++
T Consensus 482 ~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 482 AATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp TCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 78899999999998887543
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=201.74 Aligned_cols=322 Identities=10% Similarity=-0.003 Sum_probs=207.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCC-------CCcEEEcCCcHHHHHHHHHHHhcCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSD-------PELIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~-------~~~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
|..+.+.+..++.. ....|....+..++++++++++.+.+|.+.+ ..++++|+|+++++..++.++. ++
T Consensus 87 ~~~~~~~~~~~~n~---~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~-~~ 162 (486)
T 1js3_A 87 PAMLADMLCGAIGC---IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR-TK 162 (486)
T ss_dssp HHHHHHHHHHHHCC---CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhCc---CccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH-HH
Confidence 34455555555543 4456766666789999999999988887642 3578999999999999887763 21
Q ss_pred ---------CC----------EEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEE
Q 041151 155 ---------GD----------GVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 155 ---------gd----------~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
|| .|+++ .|+++ .+.++.+|+ +.|++++++..+.|..+.+|++
T Consensus 163 ~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~-~~L~~~i~~~~~~g~~p~~vv~ 241 (486)
T 1js3_A 163 VVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRA-SALQEALERDKAAGLIPFFVVA 241 (486)
T ss_dssp HHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCH-HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecCCCCCCCH-HHHHHHHHHHHhCCCCceEEEE
Confidence 42 36665 56666 335788999 9999999874333323458889
Q ss_pred ECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccc-hHHHHHhcCCCCCCCceEEEEecCCcccCC
Q 041151 199 INPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVS-SKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277 (463)
Q Consensus 199 ~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g 277 (463)
++|+||||.+-+ +++|+++|++||+++++|++|+.+.+.. ..... +..+ ..- . ++..|+||++ +
T Consensus 242 ~~~~n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~-~~~~~~~~g~--------~~a-d-si~~~~hK~~-~ 306 (486)
T 1js3_A 242 TLGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFIC-PEFRHLLNGV--------EFA-D-SFNFNPHKWL-L 306 (486)
T ss_dssp EBSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGS-TTTGGGGTTG--------GGC-S-EEEECHHHHS-S
T ss_pred eCCCCCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHC-HHHHHHhcCc--------ccc-C-eeEEchhhhc-C
Confidence 999999998844 8888999999999999999999765411 11111 1111 111 1 4457899988 6
Q ss_pred CCCceeEEEEecCCChhH-HHHHHh---hh-h--h---------------cccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 278 ECGQRGGYFEMTNIPPKT-VDEIYK---IA-S--I---------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 278 ~~G~R~G~~~~~~~~~~~-~~~l~~---~~-~--~---------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
+| +++||+++ .++.. .+.+.. +. . . +.....+.+.++...+ ..
T Consensus 307 ~p-~~~G~l~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~------------g~ 371 (486)
T 1js3_A 307 VN-FDCSAMWV--KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY------------GV 371 (486)
T ss_dssp CC-SSCEEEEE--SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH------------HH
T ss_pred CC-cceEEEEE--eCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHH------------hH
Confidence 55 88999997 45543 333311 00 0 0 0011223333333322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC
Q 041151 336 RESKGILESLRRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~ 414 (463)
...+++.+++.++++++.+.|++.||+++.. |+.+++.| ++...... ..++. +.|.+.|+.+.++.
T Consensus 372 ~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~-----------~~~l~-~~L~~~g~~~~~~~ 438 (486)
T 1js3_A 372 KGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCF-RLKGSDGL-----------NEALL-ERINSARKIHLVPC 438 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEEE-EESSCHHH-----------HHHHH-HHHHHHTSCBCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEEE-EecChHHH-----------HHHHH-HHHHhcCCEEEEEE
Confidence 3355677788889999999999988998864 66666655 22211110 23444 44555676544333
Q ss_pred CCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHHHHHh
Q 041151 415 GFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEFMEQY 454 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~~~~~ 454 (463)
.++ +..++|+++. ++++++++++++|+++++++.+++
T Consensus 439 ~~~---~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~~~ 478 (486)
T 1js3_A 439 RLR---GQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLAAE 478 (486)
T ss_dssp EET---TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEC---CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 332 3458999986 467899999999999998876543
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=197.82 Aligned_cols=272 Identities=11% Similarity=0.050 Sum_probs=174.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCC
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQ 169 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~ 169 (463)
...+|++.++++++ .+..++++++++++..++.+++ ++||+|+++ .|+++ ..+
T Consensus 83 ~~~~le~~lA~l~g--------~~~~v~~~sG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~ 153 (430)
T 3ri6_A 83 TVEDLEQRLKNLTG--------ALGVLALGSGMAAISTAILTLA-RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVD 153 (430)
T ss_dssp HHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 35678888888764 2335555566799999999997 899999996 34444 111
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
.. |+ +.|++++++ ++++|++++|+||||.+++ +++|+++|+++|++||+|++|+...+ .. ..
T Consensus 154 ~~--d~-~~l~~ai~~------~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~---~~--~~- 215 (430)
T 3ri6_A 154 VM--DS-LAVEHACDE------TTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYL---LE--AK- 215 (430)
T ss_dssp TT--CH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTT---CC--GG-
T ss_pred CC--CH-HHHHHhhCC------CCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc---CC--hH-
Confidence 11 78 999999887 8999999999999999997 66788889999999999999986433 11 11
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH------------------HHHHHhhh-h-hcccC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT------------------VDEIYKIA-S-IALSP 309 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~------------------~~~l~~~~-~-~~~~~ 309 (463)
. . + ..+++.|+||++ +.+|..+|.+++.+++..+ +..+.... . .....
T Consensus 216 ~----~----g---~div~~S~sK~l-~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~ 283 (430)
T 3ri6_A 216 R----L----G---VDIEVLSSTKFI-SGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSL 283 (430)
T ss_dssp G----G----T---CSEEEEECCCEE-ETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCC
T ss_pred H----c----C---CEEEEECCcccc-cCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCC
Confidence 1 1 1 248999999999 6566555555542223222 23332211 1 12222
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccCC----------------ceeE
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFTE----------------GAMY 372 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~~----------------g~~~ 372 (463)
+......+.. .++.+....++..+++..+.+.|++.|++. +..|. |++.
T Consensus 284 ~~~~a~l~l~--------------~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~ 349 (430)
T 3ri6_A 284 SPHNAYLQSL--------------GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSI 349 (430)
T ss_dssp CHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred CHHHHHHHHh--------------hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceE
Confidence 3222221111 233344455667888899999999888776 33343 6657
Q ss_pred EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC--------------------CCCCcEEEEEecCC
Q 041151 373 SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ--------------------KEGIFHLRTTILPA 432 (463)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~--------------------~~~~~~lRis~~~~ 432 (463)
+|+.++ ... +.....+.++..++.+.+|..+.. .-..++||||++.
T Consensus 350 lsf~l~--~~~-----------~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~- 415 (430)
T 3ri6_A 350 LTFELE--SKE-----------ASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGI- 415 (430)
T ss_dssp EEEECS--SHH-----------HHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCS-
T ss_pred EEEEEC--CHH-----------HHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc-
Confidence 775444 210 222223334455666777776652 0124689999994
Q ss_pred cCcHHHHHHHHHHHH
Q 041151 433 EEDMPAIMESFKKFN 447 (463)
Q Consensus 433 ~e~i~~~~~~l~~~l 447 (463)
|+.+.+++.|++++
T Consensus 416 -E~~~dl~~dl~~al 429 (430)
T 3ri6_A 416 -EEIEDLKEDILQAL 429 (430)
T ss_dssp -SCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHhh
Confidence 56777788877765
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=199.59 Aligned_cols=200 Identities=12% Similarity=0.139 Sum_probs=138.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------cCCCc---ccC
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------KRQQI---GVL 174 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------~~~~~---~~d 174 (463)
+..++|+++|++++ .+ ++++++++++++..++. ++ ++||+|+++ ++... ...+. .++
T Consensus 56 ~~~~lr~~la~~~g------~~--~~i~~~sGt~a~~~al~-~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 56 NRENLERAVAALEN------AQ--YGLAFSSGSATTATILQ-SL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp HHHHHHHHHHHHTT------CS--EEEEESCHHHHHHHHHH-TS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred hHHHHHHHHHHHhC------CC--cEEEECChHHHHHHHHH-Hc-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 45789999999875 22 45555555899999999 87 899999997 22111 01111 112
Q ss_pred --hHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC----CeEEEecccccccccCCCCCccch
Q 041151 175 --IINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE----NLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 175 --~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~----~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
. +.|++++++ ++++|++++||||||.+++ +++|.++|+++ |+++|+|++|+.+.+ . ..
T Consensus 126 ~~d-~~l~~~i~~------~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~-~-----~~ 189 (393)
T 1n8p_A 126 DLL-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI-S-----NP 189 (393)
T ss_dssp SHH-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH-C-----CG
T ss_pred CCh-HHHHHhccc------CceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc-C-----CH
Confidence 2 456666654 7999999999999999997 77888888899 999999999998765 2 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
.. + +..+++.|+||.+ |.+|+|+ ||++. .++++++.+..... .....+...+.++...++
T Consensus 190 ~~----~-------~~di~~~S~sK~~-g~~G~rigG~~~~--~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~---- 251 (393)
T 1n8p_A 190 LN----F-------GADIVVHSATKYI-NGHSDVVLGVLAT--NNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK---- 251 (393)
T ss_dssp GG----G-------TCSEEEEETTTTT-TCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT----
T ss_pred HH----c-------CCeEEEEECcccc-cCCCCceeEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc----
Confidence 11 1 1358999999999 8899999 99984 35788888877654 344455555555544443
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
......+...++++.+.+.|.+.|.
T Consensus 252 ----------~~~~~~~~~~~~~~~l~~~L~~~~~ 276 (393)
T 1n8p_A 252 ----------TLHLRVRQAALSANKIAEFLAADKE 276 (393)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1222344456666677777766543
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-20 Score=192.81 Aligned_cols=310 Identities=13% Similarity=0.025 Sum_probs=200.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCCc---EEEcCCcHHHHHHHHHHHhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPEL---IFLTDGASKGVMQTLNCVIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~~---i~~t~G~~~al~~~~~~l~~ 152 (463)
++.+++++.+.+.+. ...+|+. ..-...|++...+++.+.+|. +.+. .++++++++++..++.+++
T Consensus 67 ~~~V~eA~~~~l~~~--y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~--~~~~~~~~v~~~sGt~An~~al~al~- 141 (490)
T 2a7v_A 67 SRAALEALGSCLNNK--YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL--DPAQWGVNVQPYSGSPANLAVYTALL- 141 (490)
T ss_dssp CHHHHHHHTSGGGTC--CCCC------------CTHHHHHHHHHHHHHTTC--CTTTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCC--CccCCCcccccCccHHHHHHHHHHHHHHHHHcCC--CcccCceEEeCCchHHHHHHHHHHHc-
Confidence 899999998877652 1123332 122246664444555555453 3432 3455577999999999998
Q ss_pred CCCCEEEEc---cCc-----------e---------e-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCC
Q 041151 153 GEGDGVVLL---FHT-----------T---------W-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNP 204 (463)
Q Consensus 153 ~~gd~Vlvp---~g~-----------~---------~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NP 204 (463)
+|||+|+++ +++ . + ....+.+|+ +.|++.+.+. ++|+|+++.++||
T Consensus 142 ~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~-d~le~~l~~~-----~~klIi~~~s~~~ 215 (490)
T 2a7v_A 142 QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDY-NQLALTARLF-----RPRLIIAGTSAYA 215 (490)
T ss_dssp CSCEECCC-------------------------------CCBCTTTCSBCH-HHHHHHHHHH-----CCSEEEECCSSCC
T ss_pred CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCH-HHHHHHHhhc-----CCcEEEEcCCCCC
Confidence 999999986 221 1 1 113568999 9999999764 7899988899998
Q ss_pred CccCCCHHHHHHHHHHhhhCCeEEEecccccc-cccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee
Q 041151 205 TGQCLSEANLREILRFCYQENLVLLGDEVYQQ-NIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG 283 (463)
Q Consensus 205 tG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 283 (463)
+ ..+ +++|.++|+++|+++++|++|.. +.+ .+..+.++. . . .+++.|+||++ .|.|.
T Consensus 216 ~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~-~g~~~~~~~----~-----a----Div~~S~hK~l---~Gp~G 273 (490)
T 2a7v_A 216 R--LID---YARMREVCDEVKAHLLADMAHISGLVA-AKVIPSPFK----H-----A----DIVTTTTHKTL---RGARS 273 (490)
T ss_dssp S--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHH-TTSSCCGGG----T-----C----SEEEEESSGGG---CSCSC
T ss_pred C--ccc---HHHHHHHHHHcCCEEEEcccccccccc-CCcCCCCCC----C-----C----CEEEECCcccC---ccccc
Confidence 5 334 78889999999999999999753 333 222222221 1 1 27889999998 47788
Q ss_pred EEEEecCCCh---------------hHHHHHHhhhh-hc-ccCChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHH
Q 041151 284 GYFEMTNIPP---------------KTVDEIYKIAS-IA-LSPNVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESL 345 (463)
Q Consensus 284 G~~~~~~~~~---------------~~~~~l~~~~~-~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 345 (463)
|++++ ++ ++.+++.+... .. .+++.....++..++. ... .+.++.++++
T Consensus 274 G~i~~---~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~----------~~~~~~~~~~~~~~ 340 (490)
T 2a7v_A 274 GLIFY---RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALK----------QACTPMFREYSLQV 340 (490)
T ss_dssp EEEEE---ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHH----------HHHSHHHHHHHHHH
T ss_pred hheee---ccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH----------HHhhhhHHHHHHHH
Confidence 99996 33 35666665543 22 2333333333333331 111 2335567788
Q ss_pred HHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC--CCC
Q 041151 346 RRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK--EGI 422 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~--~~~ 422 (463)
.++++++.+.|.+. |+.+.. +..++++|+++.... . +...+...|++.||.+..+..++.. -..
T Consensus 341 ~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~g-~-----------~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~ 407 (490)
T 2a7v_A 341 LKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPKG-L-----------DGARAERVLELVSITANKNTCPGDRSAITP 407 (490)
T ss_dssp HHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTTT-C-----------CHHHHHHHHHHTTEECEEECCTTCCCSSSC
T ss_pred HHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCCC-C-----------CHHHHHHHHHhCCeEEecCccCCCCCCCCC
Confidence 99999999999997 888865 345677887765221 1 2344667888999999865544421 123
Q ss_pred cEEEEEec------CCcCcHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL------PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 423 ~~lRis~~------~~~e~i~~~~~~l~~~l~~~ 450 (463)
..+||+.. .+++|++++++.|.+++...
T Consensus 408 ~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 408 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 57999774 47799999999999888643
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=193.28 Aligned_cols=321 Identities=11% Similarity=0.023 Sum_probs=208.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC--------CcEEEcCCcHHHHHHHHHHHhc-
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP--------ELIFLTDGASKGVMQTLNCVIR- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~--------~~i~~t~G~~~al~~~~~~l~~- 152 (463)
|..+.+.+..++.. ....|....+..++++++++|+.+.+|.+... ...++|+|+++++..++.+...
T Consensus 92 ~~~~~~~~~~~~n~---~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~ 168 (481)
T 4e1o_A 92 PSLLGDMLADAINC---LGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKN 168 (481)
T ss_dssp HHHHHHHHHHHHCC---CCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc---ccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHH
Confidence 33333444445543 45677777788999999999999998876432 3678999999999888876631
Q ss_pred -----------------CCCCEEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEE
Q 041151 153 -----------------GEGDGVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVI 198 (463)
Q Consensus 153 -----------------~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l 198 (463)
.+++.|+++ .|.++ .+.++.+|+ +.|++++++....+..+.+|++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~-~~Le~~i~~~~~~g~~~~~vv~ 247 (481)
T 4e1o_A 169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRG-EALQKAIEEDKQRGLVPVFVCA 247 (481)
T ss_dssp HHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCH-HHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCH-HHHHHHHHHHHhCCCCcEEEEE
Confidence 156788887 45555 345788999 9999999875444444788888
Q ss_pred ECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCC
Q 041151 199 INPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGE 278 (463)
Q Consensus 199 ~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~ 278 (463)
+.++|+||.+-+ +++|+++|++||+++++|.+|....+.. .. ......++ .. -..+..+.+|++ +.
T Consensus 248 ~~~~t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~-~~---~~~~~~gi----~~--aDsi~~~~hK~l-~~ 313 (481)
T 4e1o_A 248 TLGTTGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLC-PE---FRGFLKGI----EY--ADSFTFNPSKWM-MV 313 (481)
T ss_dssp EBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGS-GG---GGGGGTTG----GG--CSEEEECHHHHS-SC
T ss_pred ecCCCCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhC-hh---hHHHhcCc----cc--CCEEEEChHHhc-CC
Confidence 899999998855 8888999999999999999998754311 11 11111111 11 125668999998 44
Q ss_pred CCceeEEEEecCCChhHHHHHHhhhhhc----------------c--c--CChHHHHHHHHhcCCCCCCCchHHHHHHHH
Q 041151 279 CGQRGGYFEMTNIPPKTVDEIYKIASIA----------------L--S--PNVPAQIFMGLMVNPLKPGDISYEQFVRES 338 (463)
Q Consensus 279 ~G~R~G~~~~~~~~~~~~~~l~~~~~~~----------------~--~--~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 338 (463)
| .-+|++++ .++..+.......... . + ...+.+.++...+ .....
T Consensus 314 p-~g~g~l~~--~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~------------g~~g~ 378 (481)
T 4e1o_A 314 H-FDCTGFWV--KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSF------------GVKNL 378 (481)
T ss_dssp C-SSCEEEEE--SBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHH------------HHHHH
T ss_pred C-CceEEEEE--eCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHh------------HHHHH
Confidence 4 33677776 5665433211111000 0 0 0122333333322 12335
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC-eEeeCCCCCC
Q 041151 339 KGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG-ISTVPGSGFG 417 (463)
Q Consensus 339 ~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g-I~v~pg~~f~ 417 (463)
+++.++..++++++.+.|++.||+++..+....++++++.-... ...++... |.+.| +.+.|+..
T Consensus 379 ~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~~~~~-----------~~~~l~~~-L~~~g~~~~~~~~~-- 444 (481)
T 4e1o_A 379 QAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNS-----------LTENVLKE-IAKAGRLFLIPATI-- 444 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEEESSCHH-----------HHHHHHHH-HHHHCSSBCEEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEeCCchH-----------HHHHHHHH-HHhCCeEEEEeeEE--
Confidence 56778889999999999999999998766555556655532111 13344444 44556 55555332
Q ss_pred CCCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHHH
Q 041151 418 QKEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 418 ~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+..++|+++. ++++++++++++|+++++++.
T Consensus 445 --~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 445 --QDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL 479 (481)
T ss_dssp --TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 23458999977 477999999999999988764
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-21 Score=190.79 Aligned_cols=299 Identities=12% Similarity=0.067 Sum_probs=193.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHH-HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEV-AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~i-a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vl 159 (463)
++.+++++.+.+.+. ....|++ ...+|++++ |++++ ..+++++++|+++++..++.++ + +|||+|+
T Consensus 15 ~~~i~~a~~~~~~~~--~~~~~~~--~~~~l~~~~~a~~~g-------~~~~~v~~~sgt~al~~al~~l~~-~~Gd~Vi 82 (377)
T 3ju7_A 15 VIEYLDELKEIDASH--IYTNYGP--INQRFEQTIMSGFFQ-------NRGAVTTVANATLGLMAAIQLKKR-KKGKYAL 82 (377)
T ss_dssp GGGGHHHHHHHHHHT--CCSSSCH--HHHHHHHHHHHHTST-------TCSEEEEESCHHHHHHHHHHHHSC-TTCCEEE
T ss_pred cHHHHHHHHHHHHcC--CcccCCH--HHHHHHHHHHHHHhC-------CCCeEEEeCCHHHHHHHHHHHcCC-CCcCEEE
Confidence 778888988888761 2112333 367899999 88864 1567888999999999999998 7 8999999
Q ss_pred Ec-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCc--eeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 160 LL-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 160 vp-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~--~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
++ .|+++ ..+.+.+|+ +.+++++... + +|+|+ |+||||...+ +++|.+
T Consensus 83 ~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~-~~l~~~i~~~-----~~~tk~v~---~~~~~G~~~~---~~~i~~ 150 (377)
T 3ju7_A 83 MPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDK-TVLWDKIEEL-----KEEVAIVV---PYATFGSWMN---LEEYEE 150 (377)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCH-HHHHHHHHHH-----GGGEEEEC---CBCGGGBCCC---CHHHHH
T ss_pred ECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCH-HHHHHHHhcC-----CCCceEEE---EECCCCCccC---HHHHHH
Confidence 97 66666 225688999 9999998432 6 89887 7889999887 667778
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
+|+ +|++||+|++|+......+.+ +.. .+ .+ +.+.|| +|.+ +. | +.|++++ .++++++
T Consensus 151 la~-~~~~vi~D~a~a~g~~~~~~~---~g~---~~----~d----~~~~S~~~~K~l-~~-g-~gG~~~~--~~~~l~~ 210 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMNGGMH---YGQ---DF----SG----MIIYSFHATKPF-GI-G-EGGLIYS--KNEEDIQ 210 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEETTEE---TTT---TC----SS----EEEEECBTTSSS-CC-B-SCEEEEE--SCHHHHH
T ss_pred HHh-cCCEEEEECCCccCCeECCEe---ccC---CC----Cc----EEEEECCCCCcC-CC-C-CcEEEEE--CCHHHHH
Confidence 888 999999999998643211111 100 00 11 445554 6988 53 5 6888886 6788888
Q ss_pred HHHhhhhh-------------cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-
Q 041151 298 EIYKIASI-------------ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV- 363 (463)
Q Consensus 298 ~l~~~~~~-------------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~- 363 (463)
+++.+... ....+.+...++... ++.++...++.+++++.+.+.|++++++.
T Consensus 211 ~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~--------------l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~ 276 (377)
T 3ju7_A 211 RIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIAT--------------MKKWDDKLKERTRISEWYKQLLQSNGLMKK 276 (377)
T ss_dssp HHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHH--------------HHTHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 88776541 122333433333333 23344455666777777888888776542
Q ss_pred -cccCCc--eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC--CCCC-------C---------CC
Q 041151 364 -CNFTEG--AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG--FGQK-------E---------GI 422 (463)
Q Consensus 364 -~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~--f~~~-------~---------~~ 422 (463)
+.+..+ .++.++.+..+.. .+.+.+...|.++||.++.+.. +... . ..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 345 (377)
T 3ju7_A 277 GWQLQKTEAVIQQFMPILCPEE-----------VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAK 345 (377)
T ss_dssp TCBCCCCSCBCCSSEEEECCTT-----------SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHH
T ss_pred cccCCCCCcceEEEEEEEeCCh-----------hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHh
Confidence 222221 2222222333321 1234456778889999987651 1110 0 13
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
..+||.+. .+++|++.+++.|++++.+
T Consensus 346 ~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 346 RIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp HEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 47999998 7889999999999877765
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=194.84 Aligned_cols=322 Identities=12% Similarity=0.056 Sum_probs=205.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH----hc-----
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV----IR----- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l----~~----- 152 (463)
++.+++++.....+. ....|.......++++++.+++.+..|.+ +.+++++|+|+++++..++.+. +.
T Consensus 113 ~~~v~~~~~~~~~n~--~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~ 189 (497)
T 2qma_A 113 MPAVAAEAMIAALNQ--SMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSGH 189 (497)
T ss_dssp HHHHHHHHHHHHHCC--CTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhcc--cccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhccc
Confidence 778888876554442 34456554456788888888888887764 3379999999999999988873 20
Q ss_pred ---CC------CC-EEEEc-------------cCc---ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCC
Q 041151 153 ---GE------GD-GVVLL-------------FHT---TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPG 202 (463)
Q Consensus 153 ---~~------gd-~Vlvp-------------~g~---~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~ 202 (463)
.+ |+ .|+++ .|. ++ .+.++.+|+ +.|++++++....+.++.+|++++++
T Consensus 190 ~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~-~~L~~~i~~~~~~~~~~~~vv~~~~~ 268 (497)
T 2qma_A 190 SIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDI-TKLDEVIAQAKAEGLIPFAIVGTAGT 268 (497)
T ss_dssp CHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCG-GGHHHHHHHHHHTTCEEEEEEEEBSC
T ss_pred chhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCH-HHHHHHHHHHHHCCCcceEEEEcCCC
Confidence 12 46 67776 332 34 345678999 99999998743332224488888999
Q ss_pred CCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCce
Q 041151 203 NPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR 282 (463)
Q Consensus 203 NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R 282 (463)
||||.+.+ +++|+++|++||+++++|++|+.+.+..+ .. ....++ .. ..+++.|+||++ +.| .+
T Consensus 269 ~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~~---~~~~gi----~~--~D~i~~s~hK~l-~~p-~~ 332 (497)
T 2qma_A 269 TDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS--HK---SRLKGV----ER--AHSISVDFHKLF-YQT-IS 332 (497)
T ss_dssp TTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST--TG---GGGTTG----GG--CSEEEEETTTTT-CCC-SS
T ss_pred CCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc--ch---HhhcCc----cc--CCEEEEcchhcc-CCC-cc
Confidence 99999866 77888899999999999999998765211 11 111111 11 126778999998 545 68
Q ss_pred eEEEEecCCChhHHHHHHhhhhh-ccc----C-------------ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHH
Q 041151 283 GGYFEMTNIPPKTVDEIYKIASI-ALS----P-------------NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILES 344 (463)
Q Consensus 283 ~G~~~~~~~~~~~~~~l~~~~~~-~~~----~-------------~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (463)
+|++++ .++..++.+...... ... + ..+.+.++...+. ....+++.++
T Consensus 333 ~G~l~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg------------~~g~~~~~~~ 398 (497)
T 2qma_A 333 CGALLV--NDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVG------------PKALGDMYDH 398 (497)
T ss_dssp CEEEEE--SCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTC------------HHHHHHHHHH
T ss_pred eEEEEE--eCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhC------------HHHHHHHHHH
Confidence 999997 455544433211110 000 0 0112222222221 1234456777
Q ss_pred HHHHHHHHHHHhhcCCCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCc
Q 041151 345 LRRRARMMTDGFNSCRNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIF 423 (463)
Q Consensus 345 ~~~~~~~l~~~L~~~pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~ 423 (463)
..++++++.+.|++.||+++. +|.++++.| ++.-.....+ .-...+...+.+.|+.+.++..+. +..
T Consensus 399 ~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f-~~~~~~~~~~--------~l~~~l~~~l~~~G~~~~~~~~~~---g~~ 466 (497)
T 2qma_A 399 LLAQTLEVADMIRTNDQFELLAEPSLSTVLF-RATHETADLD--------ELNKALRLEALTRGIAVLGETIVD---GKT 466 (497)
T ss_dssp HHHHHHHHHHHHHTCTTEEECSCCSSSEEEE-EECCSSSCHH--------HHHHHHHHHHHHHTSCBCEEEEET---TEE
T ss_pred HHHHHHHHHHHHhhCCCeEEEcCCCceEEEE-EEcCCccCHH--------HHHHHHHHHHHhCCCEEEEeeEEC---CEE
Confidence 888999999999998898875 566664443 3321110000 001223345667899887654432 345
Q ss_pred EEEEEe-c--CCcCcHHHHHHHHHHHHHH
Q 041151 424 HLRTTI-L--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 424 ~lRis~-~--~~~e~i~~~~~~l~~~l~~ 449 (463)
++|+++ . ++++++++++++|++++++
T Consensus 467 ~lRis~~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 467 ALKFTILNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 899998 3 7899999999999988765
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.5e-21 Score=192.56 Aligned_cols=198 Identities=11% Similarity=0.097 Sum_probs=139.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~~~ 170 (463)
..++++.+|++++ .+++++++|+++++..++.+++ ++||+|+++ .|+++ ..+
T Consensus 84 ~~~le~~lA~l~g--------~~~~i~~ssGt~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~- 153 (415)
T 2fq6_A 84 HFSLQQAMCELEG--------GAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD- 153 (415)
T ss_dssp HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHTTC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC-
T ss_pred HHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEEC-
Confidence 4578888888874 2456777888999999999997 899999997 23333 111
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh--CCeEEEecccccccccCCCCCccch
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
..|+ ++|++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|+...+ .. ++
T Consensus 154 -~~d~-~~le~ai~~------~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~--~~---p~ 217 (415)
T 2fq6_A 154 -PLIG-ADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL--FK---AL 217 (415)
T ss_dssp -TTCG-GGGGGGCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS--SC---GG
T ss_pred -CCCH-HHHHHhhcc------CCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc--CC---cc
Confidence 1277 899998876 7999999999999999997 6788888999 9999999999986532 11 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
. + . ..+++.|+||++ +.+|.+ +||++. ++++++.+..... .....+......+...
T Consensus 218 -~----~----g---~Div~~S~sK~l-g~~g~~~~G~l~~---~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~------ 275 (415)
T 2fq6_A 218 -D----F----G---IDVSIQAATKYL-VGHSDAMIGTAVC---NARCWEQLRENAYLMGQMVDADTAYITSRG------ 275 (415)
T ss_dssp -G----G----T---CSEEEEETTTTT-TCSSSCCCEEEEE---CTTTHHHHHHHHHHTTCCCCHHHHHHHHHH------
T ss_pred -c----c----C---CeEEEEeCcccc-CCCCCceEEEEEe---CHHHHHHHHHHHHhcCCCCCHHHHHHHHhh------
Confidence 1 1 1 248999999999 777765 689884 6778888876654 2333333333222222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
++.+....++..++...+.+.|++.|++
T Consensus 276 --------l~~l~~r~~~~~~n~~~l~~~L~~~~~v 303 (415)
T 2fq6_A 276 --------LRTLGVRLRQHHESSLKVAEWLAEHPQV 303 (415)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 2233344555677778888888776543
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-20 Score=190.59 Aligned_cols=308 Identities=11% Similarity=-0.023 Sum_probs=198.3
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-------CcEEEcCCcHHHHHHHHHHHhc------------------C
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-------ELIFLTDGASKGVMQTLNCVIR------------------G 153 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-------~~i~~t~G~~~al~~~~~~l~~------------------~ 153 (463)
+...|....+..++++++.+|+.+.+|.+... ...++|+|+++++..++.+... .
T Consensus 101 ~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~ 180 (475)
T 3k40_A 101 IGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180 (475)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHH
T ss_pred cccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence 45567766678899999999999998876322 3688999999998888777520 1
Q ss_pred CCCEEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHH
Q 041151 154 EGDGVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLRE 216 (463)
Q Consensus 154 ~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~ 216 (463)
+++.|+++ .|.++ .+.++ +|+ +.|++++++....+..+.+|+++.++|+||.+-+ +++
T Consensus 181 ~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~-~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---l~~ 255 (475)
T 3k40_A 181 GKLVGYCSDQAHSSVERAGLLGGVKLRSVQSENHR-MRG-AALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---LDE 255 (475)
T ss_dssp HHEEEEEETTSCHHHHHHHHHHTCEEEEECCBTTB-CCH-HHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---HHH
T ss_pred CCeEEEECCCchHHHHHHHHHcCCceEEEECCCCC-cCH-HHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC---HHH
Confidence 34678887 55555 34456 999 9999999885444444788888999999999855 888
Q ss_pred HHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH
Q 041151 217 ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV 296 (463)
Q Consensus 217 l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 296 (463)
|+++|++||+++++|.+|+...+..+ . ......++ .. -..+..+++|++++. ..+|++++ .+++.+
T Consensus 256 I~~la~~~~~~lhvD~A~~~~~~~~~-~---~~~~~~gi----~~--~Ds~~~~~hK~l~~p--~g~g~l~~--~~~~~l 321 (475)
T 3k40_A 256 CGPVGNKHNLWIHVDAAYAGSAFICP-E---YRHLMKGI----ES--ADSFNFNPHKWMLVN--FDCSAMWL--KDPSWV 321 (475)
T ss_dssp HHHHHHHTTCEEEEECTTGGGGGGSG-G---GGGGGTTG----GG--CSEEEECHHHHSSCC--SSCEEEEE--SSGGGC
T ss_pred HHHHHHHhCCeEEEeHHhHHHHHhCH-h---hHHHhcCc----cc--CCEEEECchhccCCC--CceEEEEE--eCHHHH
Confidence 88999999999999999987533111 1 11111111 11 125779999988433 34788877 455443
Q ss_pred -HHHHhhhh---------------hcccCC----hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041151 297 -DEIYKIAS---------------IALSPN----VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 297 -~~l~~~~~---------------~~~~~~----~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 356 (463)
+.+..... .....+ .+.+.++...+ .....+++.++..++++++.+.|
T Consensus 322 ~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~------------g~~g~~~~~~~~~~~a~~l~~~L 389 (475)
T 3k40_A 322 VNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLY------------GVENLQAHIRRHCNFAKQFGDLC 389 (475)
T ss_dssp ---------------------------CCCGGGTHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 32221100 000011 11222222221 12235667788899999999999
Q ss_pred hcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec---CCc
Q 041151 357 NSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL---PAE 433 (463)
Q Consensus 357 ~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~---~~~ 433 (463)
++.||+++..+....++++++.-... ...++...+.++.++.+.|+..+ +..++|+++. +++
T Consensus 390 ~~~~g~~l~~~~~~~iv~f~~~~~~~-----------~~~~l~~~L~~~g~~~~~~~~~~----g~~~lR~~~~~~~tt~ 454 (475)
T 3k40_A 390 VADSRFELAAEINMGLVCFRLKGSNE-----------RNEALLKRINGRGHIHLVPAKIK----DVYFLRMAICSRFTQS 454 (475)
T ss_dssp HHSTTEEESSCCBTTEEEEEESSCHH-----------HHHHHHHHHHHHTSCBCEEEEET----TEEEEEEECCCTTCCH
T ss_pred hcCCCEEEecCCceEEEEEEeCCchH-----------HHHHHHHHHHhCCcEEEEeeEEC----CEEEEEEEeCCCCCCH
Confidence 99999998765554455544432111 13445555444444455554433 3458999987 478
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 041151 434 EDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 434 e~i~~~~~~l~~~l~~~~~ 452 (463)
++++.++++|+++++++.+
T Consensus 455 ~di~~~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 455 EDMEYSWKEVSAAADEMEQ 473 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999887653
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=192.57 Aligned_cols=287 Identities=10% Similarity=0.041 Sum_probs=183.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcH-HHHHHHHHHHhcC--CCCEEEEc-------------cCcee---c--
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGAS-KGVMQTLNCVIRG--EGDGVVLL-------------FHTTW---K-- 167 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~-~al~~~~~~l~~~--~gd~Vlvp-------------~g~~~---~-- 167 (463)
..++.+++.+++.+..|.+ ++ +++|+|++ .++..++.++. . +|+.|+++ .|+++ +
T Consensus 131 ~~~~~~~~~~~la~~~g~~--~~-~~~t~g~te~a~~~al~~~~-~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~ 206 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLN--VH-AIATPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETV 206 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCC--CE-EEEESSCHHHHHHHHHHHHH-HHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHcCCC--CC-EEEeCcHHHHHHHHHHHHHH-HhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEe
Confidence 3456666667776666653 44 99999999 46655666653 4 67878876 56665 2
Q ss_pred --CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCc
Q 041151 168 --RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPF 245 (463)
Q Consensus 168 --~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~ 245 (463)
...+.+|+ ++|++++++...+ .++.+|++++||||||.+.+ +++|.++|+++|+++++|++|+.+.++ .
T Consensus 207 ~~~~~~~~d~-~~l~~~i~~~~~~-~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g----~ 277 (456)
T 2z67_A 207 LDGDRVYVPV-EDIENAIKKEIEL-GNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNY----Y 277 (456)
T ss_dssp EETTEEECCH-HHHHHHHHHHHHT-TCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH----H
T ss_pred ccCCCCCcCH-HHHHHHHHHHhhC-CCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHH----h
Confidence 45678999 9999999321111 16788888999999999977 777888888999999999999865431 1
Q ss_pred cchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCC
Q 041151 246 VSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPL 324 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~ 324 (463)
.+. . ...+ ... -.+++.|++|++ + +++++||+++ .++++++.+..... .....+.+.+.++...+
T Consensus 278 ~~~-~-~~~~----~~~-~D~~~~s~hK~~-~-~p~g~G~l~~--~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l--- 343 (456)
T 2z67_A 278 LEK-L-KKAF----KYR-VDAVVSSSDKNL-L-TPIGGGLVYS--TDAEFIKEISLSYPGRASATPVVNTLVSLLSM--- 343 (456)
T ss_dssp HHH-H-HHHH----TSC-CSEEEEEHHHHH-C-CCSSCEEEEE--SCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHH---
T ss_pred hHH-H-HHhh----CCC-CCEEEEcCCCCc-C-CCCCeEEEEE--cCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHH---
Confidence 011 0 0111 101 125779999976 3 5688999996 46778777744332 11111223333333222
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHH
Q 041151 325 KPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLR 401 (463)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (463)
.....+++.+++.++++++.+.|++++ |+.+..|+ ++ +++++..+. ...++. .
T Consensus 344 ---------~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~-v~~~~~~~~------------~~~~l~-~ 399 (456)
T 2z67_A 344 ---------GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE-SP-IASCISVNS------------DPVEIA-A 399 (456)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC-CS-SEEEEECSS------------CHHHHH-H
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC-Ce-EEEEEeccc------------HHHHHH-H
Confidence 123355678888999999999998875 77777777 44 343442121 013443 4
Q ss_pred HHHhcCe---Eee------CCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 402 LLEATGI---STV------PGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 402 ll~~~gI---~v~------pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
.|.++|| .+. +|..|... ..+++|+|++ ++++++++++++|++++
T Consensus 400 ~L~~~gi~~~rv~~~~g~f~G~~~~~~-~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 400 KLYNLRVTGPRGIKKTDHFGNCYLGTY-THDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp HHHHTTEESCEEECTTCHHHHTCSSCC-SCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred HHHHcCCCcceEEeecCcccccccccc-CcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 4556675 343 23444332 2358999999 78999999999998754
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.2e-21 Score=195.71 Aligned_cols=309 Identities=12% Similarity=0.115 Sum_probs=195.9
Q ss_pred cHHHHHHHHHHhhhcC-CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-------cC
Q 041151 82 PADAIARAKHYLSLTS-GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-------RG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~ 153 (463)
++.+++++.+++.... .....|+. ....++++++++.+.+..+ ...+.|++++|+++|+..+++.+. +.
T Consensus 81 ~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~ 157 (472)
T 1ohv_A 81 HPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGSCSNENAFKTIFMWYRSKERG 157 (472)
T ss_dssp CHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCchhHHHHHHHHHHHHhhhhccC
Confidence 8889999987654210 01113433 3357899999997765433 356799999999999999998773 11
Q ss_pred -----------------CC---CEEEEc----cCcee--------------------------cCCCc------------
Q 041151 154 -----------------EG---DGVVLL----FHTTW--------------------------KRQQI------------ 171 (463)
Q Consensus 154 -----------------~g---d~Vlvp----~g~~~--------------------------~~~~~------------ 171 (463)
|| +.|++. +|... +...+
T Consensus 158 ~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 237 (472)
T 1ohv_A 158 QSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQE 237 (472)
T ss_dssp TCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHH
T ss_pred cccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhH
Confidence 45 788886 22111 00000
Q ss_pred -ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 172 -GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 172 -~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
..|+ +.|++.+++....+.++++|+++..+|+||. ..+.+.+++|.++|++||+++|+||+|..+.+. + ....+.
T Consensus 238 ~~~d~-~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~-g-~~~~~~ 314 (472)
T 1ohv_A 238 EARCL-EEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST-G-KFWAHE 314 (472)
T ss_dssp HHHHH-HHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-S-SSSGGG
T ss_pred HHHHH-HHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCC-C-Cchhcc
Confidence 1156 8888888764221225788877766888996 568999999999999999999999999865442 1 111221
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcc-cCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKG-YWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPG 327 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~-~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~ 327 (463)
.+++ .. .+-+.||||. + +| ||++ ++++. .+..... .+++.+++.|.++.++|+
T Consensus 315 ----~~gv--~~---~~Di~t~sK~~l---~G---G~~~----~~~~~-~~~~~~~~~T~~~~~~~~aaa~aal~----- 369 (472)
T 1ohv_A 315 ----HWGL--DD---PADVMTFSKKMM---TG---GFFH----KEEFR-PNAPYRIFNTWLGDPSKNLLLAEVIN----- 369 (472)
T ss_dssp ----GGCC--SS---CCSEEEECGGGS---SE---EEEE----CGGGS-CSSSSSSCCSSSSCHHHHHHHHHHHH-----
T ss_pred ----ccCC--CC---CCCEEEEccccc---cC---CccC----chhhc-ccccccccCccCccHHHHHHHHHHHH-----
Confidence 1110 10 0224589998 5 24 7775 44442 1222222 355678889988887763
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC-cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHH
Q 041151 328 DISYEQFVRESKGILESLRRRARMMTDGFNSC----RN-VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (463)
.... +.+.++++++++++.+.|+++ |+ +....+.|.++ ++++ +... +...++..
T Consensus 370 ------~~~~-~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~-~~~~--~~~~----------~~~~~~~~- 428 (472)
T 1ohv_A 370 ------IIKR-EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFC-SFDT--PDES----------IRNKLISI- 428 (472)
T ss_dssp ------HHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEE-EEEC--SSHH----------HHHHHHHH-
T ss_pred ------HHHh-CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEE-EEEe--CChh----------HHHHHHHH-
Confidence 2221 245677788888888877654 43 43345555544 4333 3210 13445555
Q ss_pred HHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 403 LEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 403 l~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
|.++||.+.|+. .+++|++++ .+++++++++++|++++++
T Consensus 429 l~~~Gv~~~~~g-------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 429 ARNKGVMLGGCG-------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp HHHTTEECEEET-------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHCCeEEecCC-------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 446899999842 348999777 8899999999999998865
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=190.79 Aligned_cols=274 Identities=14% Similarity=0.085 Sum_probs=170.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH-HhcCCCCEEEEc-----------------cCcee-
Q 041151 106 SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC-VIRGEGDGVVLL-----------------FHTTW- 166 (463)
Q Consensus 106 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~-l~~~~gd~Vlvp-----------------~g~~~- 166 (463)
.+|..++.+++.+.+.+..| .++++|++++|++.++..+..+ .. ++||+|+++ .|+++
T Consensus 103 ~~g~~~~~~~~~~~la~~~g--~~~~~i~~~~g~taa~ea~~~a~~~-~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~ 179 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAG--LEIANASMYDGATALAEGVLLALRE-TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL 179 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHT--SSEECSCBSSHHHHHHHHHHHHHHH-HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hhhHHHHHHHHHHHHHHHhC--CCccceEEeCcHHHHHHHHHHHHhc-CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence 34555555555555555555 4567899999999443333333 23 689999997 36665
Q ss_pred --cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc-ccccccCCCC
Q 041151 167 --KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV-YQQNIYQDER 243 (463)
Q Consensus 167 --~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea-y~~~~~~~~~ 243 (463)
+...+.+|+ +. +++ ++++|++++| ||||.+.+ +++|+++|+++|+++++|.. .+...+
T Consensus 180 ~v~~~~~~~d~-~~----i~~------~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~---- 240 (438)
T 1wyu_A 180 TLPLEGGRTPL-PE----VGE------EVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVL---- 240 (438)
T ss_dssp EECCBTTBCCC-CC----CCT------TEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTB----
T ss_pred EEcCcCCccCH-HH----hCC------CeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCc----
Confidence 324456777 66 443 7999999999 99999986 77888889999999996522 211111
Q ss_pred CccchHHHHHhcCCCCCCCceEEEEecCCcccCC----CCCceeEEEEecCCChhHHHHHHhh-----------------
Q 041151 244 PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG----ECGQRGGYFEMTNIPPKTVDEIYKI----------------- 302 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g----~~G~R~G~~~~~~~~~~~~~~l~~~----------------- 302 (463)
. .... + +.+ +++.| ||.| | +.|.++||+++ ++++++.+...
T Consensus 241 ~--~~~~----~----g~D---~~~~s-~kk~-~~~~~~~Gp~~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 302 (438)
T 1wyu_A 241 K--PPGA----Y----GAD---IAVGD-GQSL-GLPMGFGGPHFGFLAT---KKAFVRQLPGRLVSETVDVEGRRGFILT 302 (438)
T ss_dssp C--CHHH----H----TCS---EEEEE-CTTT-TCCCGGGCSCCEEEEE---CGGGGGGCCSCCEEEEEBTTSCEEEEEC
T ss_pred C--CCcc----C----CCC---EEEEC-Cccc-CCCccCCCCCeeEEEE---cHHHHHhCCCceeccccccCCCcceeee
Confidence 1 1112 1 221 55566 6655 3 34668999995 67666554211
Q ss_pred --------h--hhcccC---ChHHHHHHHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 041151 303 --------A--SIALSP---NVPAQIFMGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSCRNVVCNFTE 368 (463)
Q Consensus 303 --------~--~~~~~~---~~~~q~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~ 368 (463)
+ ..+.+. +.....++..++. .+. ...+++++++.++++++.+.|+++||+++..+.
T Consensus 303 l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~----------~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 372 (438)
T 1wyu_A 303 LQAREQYIRRAKAKSNITTNAQLTALMGAMYLA----------ALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK 372 (438)
T ss_dssp CGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS
T ss_pred ccccccccchhcccCCccchHHHHHHHHHHHHH----------HhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC
Confidence 0 011111 1111111111121 111 125567888899999999999998899887654
Q ss_pred ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEe--eCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHH
Q 041151 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIST--VPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFK 444 (463)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v--~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~ 444 (463)
.+|.++.++.+. +..+++.. |.++||.+ .++..|+ .+++|||+. ++.+++++++++|+
T Consensus 373 -~~~~~~~~~~~~------------~~~~~~~~-L~~~gi~v~~~~~~~~~----~~~lRis~~~~~t~edi~~~~~~l~ 434 (438)
T 1wyu_A 373 -PFFNEFALALPK------------DPEAVRRA-LAERGFHGATPVPREYG----ENLALFAATELHEEEDLLALREALK 434 (438)
T ss_dssp -SBCSEEEEECSS------------CHHHHHHH-HHHTTCCCCEECCTTSC----SSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred -CeEEEEEEeCCC------------CHHHHHHH-HHHCCceeccccccccC----CCeEEEEecccCCHHHHHHHHHHHH
Confidence 344433344321 24455544 55679999 7777664 348999999 78899999999998
Q ss_pred HHH
Q 041151 445 KFN 447 (463)
Q Consensus 445 ~~l 447 (463)
+++
T Consensus 435 ~~l 437 (438)
T 1wyu_A 435 EVL 437 (438)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.2e-21 Score=193.85 Aligned_cols=268 Identities=12% Similarity=0.067 Sum_probs=168.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---
Q 041151 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW--- 166 (463)
Q Consensus 103 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~--- 166 (463)
|.+.....++++.+++ ++ .+ +++++|+|+++++..++.+++ ++||+|+++ .|.++
T Consensus 53 ~~~~~~~~~~~~~la~-~g------~~-~~v~~~~G~t~a~~~~~~a~~-~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v 123 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-HS------DY-DGYFLVNGTTSGILSVIQSFS-QKKGDILMARNVHKSVLHALDISQQEGHFI 123 (446)
T ss_dssp TSCSSHHHHHHHHHCS-CT------TE-EEEEESSHHHHHHHHHHHTTT-TSSSCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred cCcchHHHHHHHHHHh-cC------CC-ceEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHcCCeEEEE
Confidence 3344455677777777 64 33 689999999999999999997 899999997 45555
Q ss_pred -c--CCC----cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc-cc
Q 041151 167 -K--RQQ----IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ-NI 238 (463)
Q Consensus 167 -~--~~~----~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~-~~ 238 (463)
. ... +.+|+ +.| +.+ ++++|++++ .|+||.+++ +++|+++|+++|++||+||+|+. +.
T Consensus 124 ~~~~~~~~~~~~~~d~-~~l---~~~------~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~ 189 (446)
T 2x3l_A 124 ETHQSPLTNHYNKVNL-SRL---NND------GHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFG 189 (446)
T ss_dssp EEEECTTTSSEEEEEC-----------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTT
T ss_pred eCeeccccCcCCCCCH-HHH---cCC------CceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhc
Confidence 2 333 57888 887 333 789999999 455999998 67888899999999999999986 33
Q ss_pred cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH--HHHhhhh-h-cccCChHHH
Q 041151 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD--EIYKIAS-I-ALSPNVPAQ 314 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~--~l~~~~~-~-~~~~~~~~q 314 (463)
|. +. +.+.... +. .+++.|+||++++++| +||+++ ++++++ .+..... . ..+++....
T Consensus 190 f~-~~-~~~~~~~--------g~---Di~~~S~~K~l~~~~g--~g~l~~---~~~~i~~~~~~~~~~~~~~~s~~~~~~ 251 (446)
T 2x3l_A 190 LQ-GF-PDSTLNY--------QA---DYVVQSFHKTLPALTM--GSVLYI---HKNAPYRENIIEYLSYFQTSSPSYLIM 251 (446)
T ss_dssp ST-TS-CCCGGGG--------TC---SEEEECHHHHSSSCTT--CEEEEE---ETTCTTHHHHHHHHHHHSCSSCCHHHH
T ss_pred cC-CC-CCChHHc--------CC---CEEEECCccccccccc--cEEEEE---cCCcCCHHHHHHHHHHHcCCCchHHHH
Confidence 42 22 2233221 22 2899999997744444 899996 444433 3333222 1 233333333
Q ss_pred HHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 315 IFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
.++..++ +++.. .+++.++..++.+.+.+. |+.+..+..+.++|+.++ +.
T Consensus 252 aal~~a~-----------~~l~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~---~~--------- 303 (446)
T 2x3l_A 252 ASLESAA-----------QFYKTYDSTLFFAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYE---GF--------- 303 (446)
T ss_dssp HHHHHHH-----------HHHHHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECT---TS---------
T ss_pred HHHHHHH-----------HHHHHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeC---Cc---------
Confidence 3332222 11221 111344444444444443 667766655556775553 11
Q ss_pred CChHHHHHHHHHhcCeEee-CCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTV-PGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~-pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+..++ .+.|.++||.+. +|. +++|++++ .+++++ +++++|+++++++
T Consensus 304 -~~~~l-~~~L~~~GI~v~~~g~--------~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 304 -TGHDI-QNWFMNAHIYLELADD--------YQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp -CHHHH-HHHHHHTTEEESEECS--------SCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred -CHHHH-HHHHHHCCCEEEecCC--------CEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 23444 445666699997 432 37999999 588999 9999999887544
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-20 Score=183.47 Aligned_cols=270 Identities=9% Similarity=0.002 Sum_probs=175.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---c---------------Ccee-cCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---F---------------HTTW-KRQ 169 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~---------------g~~~-~~~ 169 (463)
..+|++.++++++ .+.+++++++++++.. +..++ ++||+|+++ + |.++ ..+
T Consensus 69 ~~~l~~~la~l~g--------~~~~~~~~sG~~Ai~~-~~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 69 RFAYERCVAALEG--------GTRAFAFASGMAATST-VMELL-DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp HHHHHHHHHHHHT--------CSEEEEESSHHHHHHH-HHTTS-CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHhC--------CCCEEEecCHHHHHHH-HHHHc-CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 3567777777653 2356666666999998 45676 899999997 2 3333 111
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
..|+ +.|++++++ ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|+...+. . ++
T Consensus 139 --~~d~-~~l~~~i~~------~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~--~---~~- 200 (400)
T 3nmy_A 139 --LTDP-AAFKAAIRA------DTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQ--R---PL- 200 (400)
T ss_dssp --TTSH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC--C---GG-
T ss_pred --CCCH-HHHHHHhcc------CCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccC--C---hh-
Confidence 1277 999999876 8999999999999999997 888888999999999999999865431 1 11
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE--EEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY--FEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~--~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
. + +..+++.|+||++ +.+|.++|. +++ +++++++.+..... .+...++.....+...++
T Consensus 201 ~----~-------g~div~~S~sK~l-~g~g~~~gG~~vv~--~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~---- 262 (400)
T 3nmy_A 201 S----L-------GADLVVHSATKYL-NGHSDMVGGIAVVG--DNAELAEQMAFLQNSIGGVQGPFDSFLALRGLK---- 262 (400)
T ss_dssp G----G-------TCSEEEEETTTTT-TCSSSCCCEEEEEC--SCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHT----
T ss_pred h----c-------CCcEEEecCcccc-CCCCCcceeEEEEe--CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHh----
Confidence 0 1 1348999999999 667777765 443 57888888877765 455556666555555543
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cC----------------CceeEEeeeccCChhhHHHHhh
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FT----------------EGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~----------------~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
.+....++..++.+.+.+.|++.|.+..+ .| ..|.++++.++ .+.
T Consensus 263 ----------~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~--~~~------ 324 (400)
T 3nmy_A 263 ----------TLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK--GGF------ 324 (400)
T ss_dssp ----------THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET--THH------
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC--CcH------
Confidence 22234556678888888999887765432 22 12455564443 210
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCC------------C--------CCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQ------------K--------EGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~------------~--------~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+....+...++-.++.+..|..+.. + -..+.+|||++. |+.+.+++.|.++++
T Consensus 325 ----~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl--e~~~dli~dl~~al~ 397 (400)
T 3nmy_A 325 ----DAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGI--EDLGDLRGDLERALV 397 (400)
T ss_dssp ----HHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCc--CCHHHHHHHHHHHHh
Confidence 0111122223333444455544321 0 024589999995 466777778877775
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-19 Score=178.62 Aligned_cols=291 Identities=13% Similarity=0.129 Sum_probs=187.1
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-------hcC
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-------IRG 153 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-------~~~ 153 (463)
+++.+++++.+.+.. ..|.+..+..++|++++++++ . +++++++++++++..++.++ + +
T Consensus 13 ~~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~la~~~~------~--~~~i~~~sGt~a~~~al~~~~~~~~~~~-~ 78 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDS-----KMFTMGEYVKQYETQFAKTFG------S--KYAVMVSSGSTANLLMIAALFFTKKPRL-K 78 (390)
T ss_dssp CCHHHHHHHHHHHHH-----TCCSSCHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHTTSSSSCSC-C
T ss_pred CCHHHHHHHHHHHHc-----CCCCCChHHHHHHHHHHHHHC------C--CcEEEECCHHHHHHHHHHHHHhhhhcCC-C
Confidence 388999999888876 235556678999999999985 2 25666666678999999998 6 7
Q ss_pred CCCEEEEc-------------cCcee---c-C-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 154 EGDGVVLL-------------FHTTW---K-R-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 154 ~gd~Vlvp-------------~g~~~---~-~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
+||+|+++ .|.++ + . +.+.+|+ +.|++.+++ ++++|++++ ++|... +++
T Consensus 79 ~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~-~~l~~~i~~------~~~~v~~~~---~~g~~~---~~~ 145 (390)
T 3b8x_A 79 KGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDI-ESLKEAVTD------STKAILTVN---LLGNPN---NFD 145 (390)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCH-HHHHHHCCT------TEEEEEEEC---GGGCCC---CHH
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCH-HHHHHHhCc------CCeEEEEEC---CccChh---hHH
Confidence 99999997 56665 2 2 2478999 999999876 799999984 345443 488
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe--cCCcccCCCCCceeEEEEecCCCh
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH--TVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+|.++|+++|+++|+|++|+........ . + +.. ..+... ..+|.+ + +| +.|++++ .++
T Consensus 146 ~i~~l~~~~~~~li~D~a~~~g~~~~~~---~-------~----g~~-~~~~~~s~~~~k~~-~-~g-~gG~~~~--~~~ 205 (390)
T 3b8x_A 146 EINKIIGGRDIILLEDNCESMGATFNNK---C-------A----GTF-GLMGTFSSFYSNHI-A-TM-EGGCIVT--DDE 205 (390)
T ss_dssp HHHHHHTTSCCEEEEECTTCTTCEETTE---E-------T----TSS-SSEEEEECCTTSSS-C-SS-SCEEEEE--SCH
T ss_pred HHHHHHHHcCCEEEEECcCcccCEECCc---c-------c----ccc-cceEEEEccCCCCC-c-cC-CceEEEe--CCH
Confidence 8889999999999999999854321110 1 1 110 012222 234555 2 23 4599985 344
Q ss_pred hHHHHHHhhhhhc----------------------------cc----CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 294 KTVDEIYKIASIA----------------------------LS----PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 294 ~~~~~l~~~~~~~----------------------------~~----~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
++.+++....... .+ .+.+...++... ++.+++.
T Consensus 206 ~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~--------------l~~l~~~ 271 (390)
T 3b8x_A 206 EIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ--------------LKKLPRF 271 (390)
T ss_dssp HHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH--------------HHHHHHH
Confidence 6777666543211 01 223332222222 2334567
Q ss_pred HHHHHHHHHHHHHHhhcCCCcccccC--CceeE-EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeC---CCC
Q 041151 342 LESLRRRARMMTDGFNSCRNVVCNFT--EGAMY-SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVP---GSG 415 (463)
Q Consensus 342 ~~~~~~~~~~l~~~L~~~pg~~~~~~--~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~p---g~~ 415 (463)
.++.+++++++.+.|+++||+.+..+ ..+++ +++.++.+.+ . +.+.+...|.++||.+++ |..
T Consensus 272 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~-~~~~l~~~L~~~gI~v~~~~~~~~ 340 (390)
T 3b8x_A 272 ISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSG----------V-IRKQLVENLNSAGIECRPIVTGNF 340 (390)
T ss_dssp HHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSC----------C-CHHHHHHHHHHTTBCCBCSTTSSG
T ss_pred HHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCc----------c-cHHHHHHHHHHCCCCeeeecCCch
Confidence 77788889999999998888877653 23432 3433331111 0 223345567788999987 332
Q ss_pred CCC-CC------------------CCcEEEEEec--CCcCcHHHHHHHH
Q 041151 416 FGQ-KE------------------GIFHLRTTIL--PAEEDMPAIMESF 443 (463)
Q Consensus 416 f~~-~~------------------~~~~lRis~~--~~~e~i~~~~~~l 443 (463)
+.. +. ..+.+||++. .+++|++++++.|
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 341 LKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp GGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred hhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 211 10 0136999999 8899999988876
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-19 Score=183.09 Aligned_cols=323 Identities=12% Similarity=0.050 Sum_probs=199.9
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-------cCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-------RGE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~~ 154 (463)
|..+...+.....+ .....|....+..++.+++.+++.+..|.+ ++++++|+|+++++..++.++. ..+
T Consensus 121 ~~~~~~~~l~~~~n--~~~~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~ 196 (515)
T 2jis_A 121 PHALAGRIITESLN--TSQYTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQR 196 (515)
T ss_dssp HHHHHHHHHHHHHC--CCTTCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhc
Confidence 44454444433322 233456555566677777777777777754 6899999999999998888762 125
Q ss_pred CC------EEEEc-------------cCc---ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 155 GD------GVVLL-------------FHT---TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 155 gd------~Vlvp-------------~g~---~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
|+ .|+++ .|. ++ .+..+.+|+ +.|++++++....+.++++|++++|+||||.+
T Consensus 197 G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~-~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i 275 (515)
T 2jis_A 197 GLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVP-EDLERQIGMAEAEGAVPFLVSATSGTTVLGAF 275 (515)
T ss_dssp CGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCH-HHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB
T ss_pred CccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCH-HHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCc
Confidence 75 77776 344 44 334678999 99999998754445468999999999999999
Q ss_pred CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 209 LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 209 ~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
.+ +++|+++|+++|+++++|++|+.+.+. ...... ...++ . ...+++.|++|++ +.| .++|++++
T Consensus 276 ~~---l~~I~~la~~~g~~l~vD~a~~~~~~~-~~~~~~---~~~g~----~--~aD~v~~s~hK~l-~~p-~g~G~l~~ 340 (515)
T 2jis_A 276 DP---LEAIADVCQRHGLWLHVDAAWGGSVLL-SQTHRH---LLDGI----Q--RADSVAWNPHKLL-AAG-LQCSALLL 340 (515)
T ss_dssp CC---HHHHHHHHHHHTCEEEEEETTGGGGGG-CTTTGG---GGTTG----G--GCSEEEECTTSTT-CCC-SCCEEEEE
T ss_pred cC---HHHHHHHHHHcCCeEEEehhhhhHHHh-ChhhHh---hcCCC----c--cCCEEEECccccc-CCC-CCeeEEEE
Confidence 77 778888999999999999999987652 111111 01111 1 1237889999998 533 56999997
Q ss_pred cCCCh-hHHHHHHh----hh-hh-----------cc------cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHH
Q 041151 289 TNIPP-KTVDEIYK----IA-SI-----------AL------SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESL 345 (463)
Q Consensus 289 ~~~~~-~~~~~l~~----~~-~~-----------~~------~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (463)
.++ ++++.... +. .. .+ ....+.+.++..++ ....++++.++.
T Consensus 341 --~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~l------------g~~g~~~~~~~~ 406 (515)
T 2jis_A 341 --QDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQ------------GDQGLERRIDQA 406 (515)
T ss_dssp --SCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred --eChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHH------------hHHHHHHHHHHH
Confidence 344 45554211 11 00 00 00122222222222 122345677788
Q ss_pred HHHHHHHHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCC-C-Ch--H------HHHHHHHHhcCeEeeCCC
Q 041151 346 RRRARMMTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGK-V-PD--V------FYCLRLLEATGISTVPGS 414 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~-~-~~--~------~~~~~ll~~~gI~v~pg~ 414 (463)
.++++++.+.|++.||+++.. |..+.+.|.. .|... .+. . .+ . ..+...+.+.|+.+....
T Consensus 407 ~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~--~p~~~------~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~ 478 (515)
T 2jis_A 407 FVLARYLVEEMKKREGFELVMEPEFVNVCFWF--VPPSL------RGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQ 478 (515)
T ss_dssp HHHHHHHHHHHHTSTTEEESSCCSSSEEEEEE--CCGGG------TTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEE--eCccc------cccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 889999999999988988765 4444444421 12210 000 0 01 0 113344556686543211
Q ss_pred CCCCCCCCcEEEEEec---CCcCcHHHHHHHHHHHHH
Q 041151 415 GFGQKEGIFHLRTTIL---PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 415 ~f~~~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~ 448 (463)
.. ....+++|++++ ++++++++++++|+++++
T Consensus 479 ~~--~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~ 513 (515)
T 2jis_A 479 PH--GTRGNFFRVVVANSALTCADMDFLLNELERLGQ 513 (515)
T ss_dssp EE--TTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred EE--CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 11 112358999994 889999999999988764
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-22 Score=206.42 Aligned_cols=312 Identities=12% Similarity=0.052 Sum_probs=198.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++... ....|+. ....+|.+.|++++. ..+.+++++++++|+..+++.... ..++.|++
T Consensus 118 ~p~V~~Av~~q~~~~--~~~~~~~-~~~~~Lae~L~~~~p-------~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~ 187 (465)
T 2yky_A 118 HPVIRAAVERALAVG--LNLSTQT-ENEALFAEAVCDRFP-------SIDLVRFTNSGTEANLMALATATAITGRKTVLA 187 (465)
Confidence 677888888877651 2234433 334677777777652 357899999999999999987521 24477777
Q ss_pred c---c-Ccee--c-------------CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC-CHHHHHHHHHH
Q 041151 161 L---F-HTTW--K-------------RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL-SEANLREILRF 220 (463)
Q Consensus 161 p---~-g~~~--~-------------~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~-s~~~l~~l~~~ 220 (463)
. + |... . ...+ .|+ +.|++.+++. +.++++|+++..+|+||.+. +.+.+++|.++
T Consensus 188 ~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-~d~-~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l 262 (465)
T 2yky_A 188 FDGGYHGGLLNFASGHAPTNAPYHVVLGVY-NDV-EGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAE 262 (465)
Confidence 6 2 2111 0 0011 267 8899888741 11688888765455699654 67889999999
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|++||+++|+||+|. +.. + . ..... ..+...-+.||||++ |. |+|+||++ +++++++.+.
T Consensus 263 ~~~~g~llI~DEv~~-~r~-g-~-~~a~~-----------~~gv~pDi~t~sK~l-g~-G~piG~v~---~~~~i~~~l~ 322 (465)
T 2yky_A 263 ASRCGALLIFDEVMT-SRL-S-G-GGAQE-----------MLGISADLTTLGKYI-GG-GMSFGAFG---GRRDLMERFD 322 (465)
Confidence 999999999999999 643 1 1 11111 111123356899999 64 99999998 6889999887
Q ss_pred h-----h-hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCcee
Q 041151 301 K-----I-ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAM 371 (463)
Q Consensus 301 ~-----~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~ 371 (463)
. . ...+++.+++.|.++.+.|+. +++ +.+.+++.++.+++.+.|+++. ++....+..|.
T Consensus 323 ~~~~g~~~~~~T~~~npla~aAa~aaL~~-----------l~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~ 390 (465)
T 2yky_A 323 PARDGAFAHAGTFNNNILTMSAGHAALTQ-----------IYT-RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGS 390 (465)
Confidence 6 2 224678899999998888752 111 2355666777777777776541 22222334556
Q ss_pred EEeeeccC-Ch-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 372 YSFPQIRL-PP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 372 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
++|+.+.- +. .+-+. ..........++. .|.++||++.|+. |+ . +++..+++++++++++|++++++
T Consensus 391 ~~~i~~~~~~~~~~~~~-~~~d~~~~~~~~~-~ll~~GV~v~p~~-~~-------~-~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 391 LGTIHFSRAPIRSAGDV-RAADQQLKELFFF-HMLRKGIYLAPRG-MY-------A-LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 66643321 00 00000 0000001234444 4557899999965 32 1 67778899999999999999887
Q ss_pred HH
Q 041151 450 FM 451 (463)
Q Consensus 450 ~~ 451 (463)
++
T Consensus 460 ~~ 461 (465)
T 2yky_A 460 QR 461 (465)
Confidence 64
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-19 Score=178.92 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCcee-cC-C
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTW-KR-Q 169 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~-~~-~ 169 (463)
..+++++++++++ .. +.|++++| ++++..++.+++ ++||+|+++ .|.++ .. +
T Consensus 60 ~~~l~~~la~~~g------~~-~~v~~~sG-t~A~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 130 (421)
T 2ctz_A 60 VDVLEKRLAALEG------GK-AALATASG-HAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSR 130 (421)
T ss_dssp HHHHHHHHHHHHT------CS-EEEEESSH-HHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCT
T ss_pred HHHHHHHHHHHhC------CC-ceEEecCH-HHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence 4688999998885 22 34555555 999999999987 899999997 23333 11 1
Q ss_pred CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccc-cccccCCCCCccch
Q 041151 170 QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY-QQNIYQDERPFVSS 248 (463)
Q Consensus 170 ~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay-~~~~~~~~~~~~~~ 248 (463)
. .|+ +.|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++| +.. + ... .+
T Consensus 131 ~--~d~-~~l~~~i~~------~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g-~-~~~---~~ 193 (421)
T 2ctz_A 131 E--ERP-EEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGG-Y-LLR---PL 193 (421)
T ss_dssp T--CCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGG-T-SCC---GG
T ss_pred C--CCH-HHHHHhhcc------CCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCccccc-c-cCC---cc
Confidence 1 277 999999886 8999999999999999998 788888999999999999999 643 3 111 11
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEe
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEM 288 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~ 288 (463)
. . . ..+++.|+||++ +.+|.|+|++++
T Consensus 194 -~----~----~---~Di~~~s~~K~l-~~~g~~~G~~~~ 220 (421)
T 2ctz_A 194 -A----W----G---AALVTHSLTKWV-GGHGAVIAGAIV 220 (421)
T ss_dssp -G----G----T---CSEEEEETTTTT-TCSSCCCCEEEE
T ss_pred -c----c----C---CeEEEECCcccc-cCCCCcEEEEEE
Confidence 1 1 1 238899999999 779999999987
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=189.36 Aligned_cols=302 Identities=12% Similarity=0.073 Sum_probs=179.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCcee----c-C
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHTTW----K-R 168 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~~~----~-~ 168 (463)
-+.++++.+|++++ .+ ..+++++|+++++..++.+++ ++||.|+++ .|+++ . .
T Consensus 174 ~i~e~e~~lA~~~g------ae-~~i~v~nGtt~an~~ai~al~-~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 174 PAVAAEKHAARVYN------AD-KTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR 245 (730)
T ss_dssp HHHHHHHHHHHHTT------CS-EEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHC------CC-cEEEECCHHHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc
Confidence 35788888888875 22 468899999999999999998 999999997 24443 1 1
Q ss_pred CCcc----cChHHHH-----HHHHHHH-Hh-c-CCce-eEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccc
Q 041151 169 QQIG----VLIINDL-----QQSVAQA-RS-K-GITV-RAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235 (463)
Q Consensus 169 ~~~~----~d~~~~l-----~~~l~~~-~~-~-~~~~-~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~ 235 (463)
+.++ +|+ +.| ++++++. .+ . .+++ |+|++++| ||+|.+.+ +++|+++|++++++|++|++|.
T Consensus 246 ~~~~i~g~id~-e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~livDeAh~ 320 (730)
T 1c4k_A 246 NPYGFIGGIYD-SDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWV 320 (730)
T ss_dssp CTTCCEEEECG-GGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEEEEECTTC
T ss_pred cccCccCCCCH-HHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeEEEEcccc
Confidence 2233 688 888 7777641 00 0 0011 89999999 58999987 7788899999999999999997
Q ss_pred cc-ccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee-EEEEecCCChhH--------HHHHHhhhh-
Q 041151 236 QN-IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG-GYFEMTNIPPKT--------VDEIYKIAS- 304 (463)
Q Consensus 236 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~-G~~~~~~~~~~~--------~~~l~~~~~- 304 (463)
.. .|++..+..+.... ..++ .++.+++++.|+||++ +|.+. |++++ .++.+ ...+.+...
T Consensus 321 ~~~~f~~~~~g~~~l~~-~~~g---~D~~~~iv~~S~hK~L---~g~~~gg~I~v--~~~~l~g~~~~i~~~~~~~~~~~ 391 (730)
T 1c4k_A 321 GYEQFIPMMRNSSPLLI-DDLG---PEDPGIIVVQSVHKQQ---AGFSQTSQIHK--KDSHIKGQLRYCDHKHFNNSFNL 391 (730)
T ss_dssp CGGGSSGGGGGGCTTSC-CCCC---TTSCEEEEEECHHHHS---SCCTTCEEEEE--ECGGGTTSTTCCCHHHHHHHHHH
T ss_pred cccccCcccCCcCcccc-cccC---CCCCCEEEEECCCCCC---CCCCCEEEEEe--cchhhcCcccccCHHHHHHHHHH
Confidence 43 34210100011000 0000 1234689999999987 35554 56644 22221 123333322
Q ss_pred -hcccCChHHHHHHHHhcCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCc------------
Q 041151 305 -IALSPNVPAQIFMGLMVNPLKPGDISYEQFVR-ESKGILESLRRRARMMTDGFNS-CRNVVCNFTEG------------ 369 (463)
Q Consensus 305 -~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g------------ 369 (463)
.+.+++.....++..+++ .... ...+..+++.++.+.+++.|++ ++|+.+..|+.
T Consensus 392 ~~stsp~~~~iaal~aA~~----------~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~ 461 (730)
T 1c4k_A 392 FMSTSPFYPMYAALDVNAA----------MQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTE 461 (730)
T ss_dssp HSCSSCCHHHHHHHHHHHH----------HHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHH
T ss_pred hCCCCCcHHHHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccc
Confidence 123344333333333321 1111 1234566778888888999987 67887755421
Q ss_pred -------------------------e-eE-----EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC
Q 041151 370 -------------------------A-MY-----SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418 (463)
Q Consensus 370 -------------------------~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~ 418 (463)
+ ++ +. +..|.--....+.....-+...+.+.|.++||.+...
T Consensus 462 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~--i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~----- 534 (730)
T 1c4k_A 462 DMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFM--LTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS----- 534 (730)
T ss_dssp HHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEE--EECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE-----
T ss_pred cccccchhhccCccchhccccccCCcccccCCeEEE--EEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC-----
Confidence 1 11 22 2222100000000000113344556677789988652
Q ss_pred CCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 419 ~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+...+|++++ .+.++++.++++|+++.+++
T Consensus 535 --~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 535 --DLNSILFLMTPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp --CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2346899888 78899999999999887765
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-18 Score=175.16 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=158.3
Q ss_pred HHHHHHHHHHhhhc---C-CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE---cCCcHHHHHHHHHHHhcCCC
Q 041151 83 ADAIARAKHYLSLT---S-GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL---TDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 83 ~~~~~a~~~~~~~~---~-~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~g 155 (463)
+.+++++.+..... . ...+.|+.. |...|++.+|++++ .+..++ ++|+++++..++.+++ +||
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-g~~~Le~~lA~l~g--------~e~alv~p~~~sGt~A~~~al~all-~pG 116 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGYNDI-GRDSLDRVYANIFN--------TESAFVRPHFVNGTHAIGAALFGNL-RPN 116 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHTC-CTT
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCCCch-hHHHHHHHHHHHhC--------CCceEEeCCCCcHHHHHHHHHHHhc-CCC
Confidence 45666665543211 0 123445554 56788888888875 344455 7888999999999998 999
Q ss_pred CEEEEc----c---------------------Ccee---cCCCcccChHHHHHHHHHH-HHhcCCceeEEEEEC----CC
Q 041151 156 DGVVLL----F---------------------HTTW---KRQQIGVLIINDLQQSVAQ-ARSKGITVRAMVIIN----PG 202 (463)
Q Consensus 156 d~Vlvp----~---------------------g~~~---~~~~~~~d~~~~l~~~l~~-~~~~~~~~~~i~l~~----p~ 202 (463)
|+|+++ + |+++ +.+++.+|+ +++++++++ . ++|+|++++ |+
T Consensus 117 D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~-e~l~~~i~~~~-----~tklV~i~~s~gyp~ 190 (427)
T 3hvy_A 117 DTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDI-NTVKEELKKDD-----SIKLIHIQRSTGYGW 190 (427)
T ss_dssp CEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCH-HHHHHHHHHCT-----TEEEEEEESSCCSSS
T ss_pred CEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCH-HHHHHHhhCCC-----CCEEEEEECCCCCCC
Confidence 999986 1 1222 225667999 999999983 1 899999998 99
Q ss_pred CCCccCCCHHHHHHHHHHhhh--CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 203 NPTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 203 NPtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
||||.+ .++++|+++|++ +|+++++|++|+.+.+. .. +.. . . ..|+++|+||++ |.+|
T Consensus 191 nptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~~~~~-~~-p~~-------~----g---aDiv~~S~sK~l-gg~g 250 (427)
T 3hvy_A 191 RKSLRI---AEIAEIIKSIREVNENVIVFVDNCYGEFVEE-KE-PTD-------V----G---ADIIAGSLIKNI-GGGI 250 (427)
T ss_dssp SCCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCTTTSS-SC-GGG-------G----T---CSEEEEETTSGG-GTTT
T ss_pred CccccH---HHHHHHHHHHHHhCCCCEEEEECCccccccC-CC-Ccc-------c----C---CeEEEECCcccc-cccc
Confidence 999876 679999999999 89999999999886541 11 111 1 1 238999999999 5444
Q ss_pred -ceeEEEEecCCChhHHHHHHhhhh-hccc--C-ChHH-HHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 281 -QRGGYFEMTNIPPKTVDEIYKIAS-IALS--P-NVPA-QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 281 -~R~G~~~~~~~~~~~~~~l~~~~~-~~~~--~-~~~~-q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
.+.||++ +++++++.+..... ...+ . +.+. ...+... +.....+.++..+++.++.+
T Consensus 251 ~~~GG~i~---~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~g--------------l~~~~~r~~~~~~~a~~la~ 313 (427)
T 3hvy_A 251 ATTGGYIA---GKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEG--------------LFMAPHVTIEAVKGAVFCAR 313 (427)
T ss_dssp CCSCEEEE---ECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEE---ECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHh--------------HhHHHHHHHHHHHHHHHHHH
Confidence 5679998 58999999987542 1111 1 1122 2222222 22334567778889999999
Q ss_pred HhhcCCCccccc
Q 041151 355 GFNSCRNVVCNF 366 (463)
Q Consensus 355 ~L~~~pg~~~~~ 366 (463)
.|+++ |+.+.+
T Consensus 314 ~L~~~-g~~V~p 324 (427)
T 3hvy_A 314 IMELA-GFDVLP 324 (427)
T ss_dssp HHHHT-TCEEES
T ss_pred HHHhC-CCeecC
Confidence 99998 666644
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=173.84 Aligned_cols=229 Identities=9% Similarity=0.066 Sum_probs=157.1
Q ss_pred HHHHHHHHHhh--hcC--CCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE---cCCcHHHHHHHHHHHhcCCCC
Q 041151 84 DAIARAKHYLS--LTS--GGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL---TDGASKGVMQTLNCVIRGEGD 156 (463)
Q Consensus 84 ~~~~a~~~~~~--~~~--~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~gd 156 (463)
.+++++.++.. ... ...+.|+.. |...|++.+|++++ .+..++ ++|+++++..++.+++ +|||
T Consensus 47 ~Vl~A~~~~~~~~~~~~~~~gy~y~~~-~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all-~pGD 116 (427)
T 3i16_A 47 KVLNAFQEERISEAHFTNSSGYGYGDI-GRDSLDAVYARVFN--------TESALVRPHFVNGTHALGAALFGNL-RPGN 116 (427)
T ss_dssp HHHHHHHHTTCCGGGSCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTCCSHHHHHHHHHHHHC-CTTC
T ss_pred HHHHHHHHhchhHHhcCCCCCCCCCHH-HHHHHHHHHHHHhC--------CcceEEeCCCccHHHHHHHHHHHHh-CCCC
Confidence 46666655321 111 122345443 56788888888875 233355 7888999999999998 8999
Q ss_pred EEEEc----c---------------------Ccee---c-CCCcccChHHHHHHHHH--HHHhcCCceeEEEEEC----C
Q 041151 157 GVVLL----F---------------------HTTW---K-RQQIGVLIINDLQQSVA--QARSKGITVRAMVIIN----P 201 (463)
Q Consensus 157 ~Vlvp----~---------------------g~~~---~-~~~~~~d~~~~l~~~l~--~~~~~~~~~~~i~l~~----p 201 (463)
+|+++ + |+++ + ..++.+|+ +.++++++ + ++|+|++++ |
T Consensus 117 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~-e~l~~~l~~~~------~tklV~i~~s~~~p 189 (427)
T 3i16_A 117 TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNL-EEIEKVLKEDE------SITLVHIQRSTGYG 189 (427)
T ss_dssp EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCH-HHHHHHHHTCT------TEEEEEEECSCCSS
T ss_pred EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCH-HHHHHHhhCCC------CCEEEEEEcCCCCC
Confidence 99986 1 2222 2 23456899 99999998 5 899999998 9
Q ss_pred CCCCccCCCHHHHHHHHHHhhh--CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC
Q 041151 202 GNPTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC 279 (463)
Q Consensus 202 ~NPtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~ 279 (463)
+||||.+ .++++|+++|++ +|+++++|++|..+.+. .. +.. . . ..|+++|+||++ |.+
T Consensus 190 ~nptg~i---~dl~~i~~la~~~~~g~~livD~a~~~~~~~-~~-p~~-------~----g---aDiv~~S~sK~l-gg~ 249 (427)
T 3i16_A 190 WRRALLI---EDIKSIVDCVKNIRKDIICFVDNCYGEFMDT-KE-PTD-------V----G---ADLIAGSLIKNI-GGG 249 (427)
T ss_dssp SSCCCCH---HHHHHHHHHHHHHCTTSEEEEECTTTTTSSS-SC-GGG-------G----T---CSEEEEETTSGG-GTT
T ss_pred CCCcccH---HHHHHHHHHHHHhCCCCEEEEECCCcccccc-CC-ccc-------c----C---CeEEEecCcccC-CCC
Confidence 9999876 679999999999 99999999999986541 11 111 1 1 238999999999 655
Q ss_pred C-ceeEEEEecCCChhHHHHHHhhhh-hccc--CCh-HHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 280 G-QRGGYFEMTNIPPKTVDEIYKIAS-IALS--PNV-PAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTD 354 (463)
Q Consensus 280 G-~R~G~~~~~~~~~~~~~~l~~~~~-~~~~--~~~-~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 354 (463)
| .+.||++ +++++++++..... ...+ .+. +. ++..++ +.+.....+.++..+++..+.+
T Consensus 250 g~~~gG~i~---~~~~li~~l~~~~~~~~~g~~~~~~~~--~a~~~l-----------~gl~~~~~r~~~~~~~a~~la~ 313 (427)
T 3i16_A 250 IAPTGGYLA---GTKDCIEKTSYRLTVPGIGGECGSTFG--VVRSMY-----------QGLFLAPHISMEALKGAILCSR 313 (427)
T ss_dssp TCCSCEEEE---ECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEE---ECHHHHHHHHHhcccCccCccCCccHH--HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5 6789998 58999999987532 1211 111 21 111111 1233344567788899999999
Q ss_pred HhhcCCCccccc
Q 041151 355 GFNSCRNVVCNF 366 (463)
Q Consensus 355 ~L~~~pg~~~~~ 366 (463)
.|+++ |+.+.+
T Consensus 314 ~L~~~-g~~V~p 324 (427)
T 3i16_A 314 IMELA-GFEVMP 324 (427)
T ss_dssp HHHHT-TCEEES
T ss_pred HHHhC-CCeecC
Confidence 99998 666644
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=171.81 Aligned_cols=229 Identities=12% Similarity=0.127 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhhh---c-CCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE---cCCcHHHHHHHHHHHhcCCC
Q 041151 83 ADAIARAKHYLSL---T-SGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL---TDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 83 ~~~~~a~~~~~~~---~-~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~---t~G~~~al~~~~~~l~~~~g 155 (463)
..+++++.++... . ....+.|+.. |...|++.+|++++ .+..++ ++|+++++..++.+++ +||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~~-~~~~Le~~lA~l~g--------~e~alv~p~~~sGt~Ai~~al~all-~~G 101 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYDDE-GRDTLERVYATVFK--------TEAALVRPQIISGTHAISTVLFGIL-RPD 101 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTTCH-HHHHHHHHHHHHHT--------CSEEEEETTSCSHHHHHHHHHHHHC-CTT
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCChh-HHHHHHHHHHHHhC--------CCcEEEECCCccHHHHHHHHHHHhc-CCC
Confidence 3466676664321 1 1133455554 56788998988875 344455 8888999999999998 899
Q ss_pred CEEEEc----c--------------------Ccee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEEC----CCC
Q 041151 156 DGVVLL----F--------------------HTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIIN----PGN 203 (463)
Q Consensus 156 d~Vlvp----~--------------------g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~----p~N 203 (463)
|+|+++ + |+++ ...++.+|+ +.+++++++ ++++|++++ |+|
T Consensus 102 D~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~-e~l~~ai~~------~tklV~i~~s~g~p~n 174 (409)
T 3jzl_A 102 DELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDF-PRIAKKMTP------KTKMIGIQRSRGYADR 174 (409)
T ss_dssp CEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCH-HHHHHHCCT------TEEEEEEECSCTTSSS
T ss_pred CEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCH-HHHHHhccC------CCeEEEEECCCCCCCC
Confidence 999986 1 2233 234566899 999999986 899999998 999
Q ss_pred CCccCCCHHHHHHHHHHhhh--CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC-
Q 041151 204 PTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG- 280 (463)
Q Consensus 204 PtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G- 280 (463)
|||.+ .++++|+++|++ +|+++++|++|+.+.+. .. +.. . . ..|+++|+||++ |.+|
T Consensus 175 ptg~v---~~l~~I~~la~~~~~~~~livD~a~~~~~~~-~~-p~~-------~----g---~Div~~S~sK~l-gg~~~ 234 (409)
T 3jzl_A 175 PSFTI---EKIKEMIVFVKNINPEVIVFVDNCYGEFVEY-QE-PPE-------V----G---ADIIAGSLIKNP-GGGLA 234 (409)
T ss_dssp CCCCH---HHHHHHHHHHHHHCTTCEEEEECTTCTTTSS-CC-SGG-------G----T---CSEEEEETTSGG-GTTTC
T ss_pred CcCcc---ccHHHHHHHHHhhCCCCEEEEeCCccccccc-CC-ccc-------c----C---CeEEEECccccC-CccCC
Confidence 99987 568999999999 99999999999986541 11 111 1 1 238999999999 6555
Q ss_pred ceeEEEEecCCChhHHHHHHhhhh---h--cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 281 QRGGYFEMTNIPPKTVDEIYKIAS---I--ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDG 355 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~~~l~~~~~---~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 355 (463)
.+.||++ +++++++.+..... . ..++....+.++... ++....++++..+++.++.+.
T Consensus 235 ~~GG~v~---~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~g--------------l~~~~~r~~~~~~~a~~la~~ 297 (409)
T 3jzl_A 235 KTGGYIA---GKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQG--------------FFLAPHVTAQAIKGARFTAAM 297 (409)
T ss_dssp SSCEEEE---ECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEE---eCHHHHHHHHHHhccccccccccccHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHH
Confidence 4579998 68999999987542 1 112222112222222 233445677788899999999
Q ss_pred hhcCCCccccc
Q 041151 356 FNSCRNVVCNF 366 (463)
Q Consensus 356 L~~~pg~~~~~ 366 (463)
|+++ |+.+.+
T Consensus 298 L~~~-g~~v~p 307 (409)
T 3jzl_A 298 LAEF-GVEADP 307 (409)
T ss_dssp HHHT-TCEEES
T ss_pred HHhC-CCcccC
Confidence 9998 666643
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=173.86 Aligned_cols=212 Identities=11% Similarity=0.090 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------c-------------Ccee
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------F-------------HTTW 166 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------~-------------g~~~ 166 (463)
..++++++++.+.+|......+|+++ |+++++..++.+++ +|||+|+++ . |.++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~-~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~ 142 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGIL-RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGY 142 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTC-CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEE
T ss_pred hhHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhC-CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEE
Confidence 34666666666655654333344466 55899999999997 899999986 1 3343
Q ss_pred ----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhh--CCeEEEeccccccccc
Q 041151 167 ----KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIY 239 (463)
Q Consensus 167 ----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~ 239 (463)
...++.+|+ +.|++++++ ++++|+++ +||||+|...+.+++++|+++|++ +|+++|+|++|+.+.+
T Consensus 143 ~~v~~~~~~~~d~-e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~ 215 (431)
T 3ht4_A 143 NAVPLTEGGLVDF-EAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIE 215 (431)
T ss_dssp EECCBCTTSSBCH-HHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSS
T ss_pred EEeCCCCCCCcCH-HHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhcc
Confidence 234577899 999999986 89999999 699999999999999999999999 9999999999998765
Q ss_pred CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc----cCChHHH
Q 041151 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL----SPNVPAQ 314 (463)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~----~~~~~~q 314 (463)
+ .. +.. + . ..++++|+||+++|..+...||++ +++++++.+..... ... +++....
T Consensus 216 ~-~~-~~~-------~----g---~Di~~~S~sK~lgg~~~~~GG~v~---~~~~li~~l~~~~~~~~~g~~~~~~~~~~ 276 (431)
T 3ht4_A 216 E-QE-PCH-------V----G---ADLMAGSLIKNPGGGIVKTGGYIV---GKEQYVEACAYRLTSPGIGAEAGASLYSL 276 (431)
T ss_dssp S-CC-GGG-------T----T---CSEEEEETTSGGGTTTCSSCEEEE---ECHHHHHHHHHHHSCTTTTTSCSCCCSCS
T ss_pred C-CC-ccc-------c----C---CeEEEcCccccCCCCCCCceEEEE---ecHHHHHHHHHHhccCCcccccCccHHHH
Confidence 2 11 111 1 1 238999999997331234459999 58999999877543 111 1111112
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 041151 315 IFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN 365 (463)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~ 365 (463)
.++... +.....+.++..++++++.+.|+++ |+.+.
T Consensus 277 ~~~~~~--------------l~~~~~~~~~~~~~a~~l~~~L~~~-g~~v~ 312 (431)
T 3ht4_A 277 QEMYQG--------------FFLAPHVAGQALKGAIFTAAFLEKL-GMNTS 312 (431)
T ss_dssp HHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH-TCCEE
T ss_pred HHHHhH--------------hhhHHHHHHHHHHHHHHHHHHHHhC-cCEec
Confidence 222222 2223446677888889999999887 66654
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-18 Score=180.67 Aligned_cols=298 Identities=12% Similarity=0.064 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c--CCCc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K--RQQI 171 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~--~~~~ 171 (463)
.++++.++++++ . .+.+++++|+++++..++.+++ +|||.|+++ .|+++ + .+.+
T Consensus 208 ~~~ee~la~l~G------~-d~~i~~~~Gtt~a~~~~i~al~-~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~ 279 (755)
T 2vyc_A 208 GESEKYAARVFG------A-DRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRY 279 (755)
T ss_dssp HHHHHHHHHHHT------C-SEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTT
T ss_pred HHHHHHHHHHhC------C-CceEEECCcHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCcc
Confidence 466666776664 2 2468899999999999999998 999999997 45555 2 1223
Q ss_pred c----c-----ChHHHHHHHHHHHH----hcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc-
Q 041151 172 G----V-----LIINDLQQSVAQAR----SKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN- 237 (463)
Q Consensus 172 ~----~-----d~~~~l~~~l~~~~----~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~- 237 (463)
+ + |+ +.|++++++.. ..+.+++++++++| ||||.+.+ +++|+++|++++++|++|++|...
T Consensus 280 g~~g~i~~~~~d~-e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~~ 354 (755)
T 2vyc_A 280 GIIGPIYPQEMQP-ETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYA 354 (755)
T ss_dssp SCBCCCCGGGGSH-HHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTTG
T ss_pred ccccccCcCCCCH-HHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECcCchhc
Confidence 3 4 89 99999997621 12334569999998 79999987 778889999999999999999753
Q ss_pred ccCCCC-CccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCce-eEEEEecCCCh-hH-HHHHHhhhh--hcccCCh
Q 041151 238 IYQDER-PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQR-GGYFEMTNIPP-KT-VDEIYKIAS--IALSPNV 311 (463)
Q Consensus 238 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R-~G~~~~~~~~~-~~-~~~l~~~~~--~~~~~~~ 311 (463)
.+.+.. +...+ ..... + ....++|++.|+||++ +|.+ .|++++.+ .. .+ ...+..... .+.+++.
T Consensus 355 ~~~~~~~~~~~~--~g~~a--D-~~~~~~iv~~S~hK~L---~g~~~g~~i~~~~-~~~~i~~~~~~~~~~~~~s~sp~~ 425 (755)
T 2vyc_A 355 RFNPIYADHYAM--RGEPG--D-HNGPTVFATHSTHKLL---NALSQASYIHVRE-GRGAINFSRFNQAYMMHATTSPLY 425 (755)
T ss_dssp GGCGGGTTSSSS--CSCCC--C-CSSBEEEEEEETTTSS---SCCTTCEEEEEEC-CBTCCCHHHHHHHHHHTSCSSCCH
T ss_pred ccCcccCCcchh--cCCcC--C-ccCCCeEEEECccccc---cCcCCeeeeeecC-cccccCHHHHHHHHHHhCCCCHHH
Confidence 231100 11111 10000 0 1234789999999987 3555 66676522 10 11 233333322 1234444
Q ss_pred HHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCC---------cccccCC-------------
Q 041151 312 PAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRN---------VVCNFTE------------- 368 (463)
Q Consensus 312 ~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg---------~~~~~~~------------- 368 (463)
+...++..+++ ....+ .+...+++.++.+.+++.|++++| +++..|.
T Consensus 426 ~~iaal~aA~~----------~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (755)
T 2vyc_A 426 AICASNDVAVS----------MMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDF 495 (755)
T ss_dssp HHHHHHHHHHH----------HHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEG
T ss_pred HHHHHHHHHHH----------HHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcccccccccccc
Confidence 44443333321 01111 223455566666666666665544 3333221
Q ss_pred ------------------------------cee------EEeeeccCCh-hhHHHHhhcCCCChHHHHHHHHHhcCeEee
Q 041151 369 ------------------------------GAM------YSFPQIRLPP-KAIEAAKRAGKVPDVFYCLRLLEATGISTV 411 (463)
Q Consensus 369 ------------------------------g~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~ 411 (463)
.+. -+. +..+. +.-....+.|+ +...+...|+++||.+.
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~--i~~~~~~~~G~~~~~g~--~~~~l~~~L~~~gI~~e 571 (755)
T 2vyc_A 496 ADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVS--ILAPGMGEDGELEETGV--PAALVTAWLGRHGIVPT 571 (755)
T ss_dssp GGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEE--EECSCBCTTSSBCSSCC--CHHHHHHHHHTTTCCCS
T ss_pred ccccchhccchhhhhccCcccccccccccCCCccccCCeEEE--EEcCCCCCCCCccccCC--cHHHHHHHHHHCCCEEe
Confidence 111 112 11221 00000000011 22445667788998875
Q ss_pred CCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 412 PGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 412 pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.. +.+.+|++++ .+.++++.++++|+++.+.+
T Consensus 572 ~~-------~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 572 RT-------TDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp EE-------CSSEEEEECCTTCCTTTTHHHHHHHHHHHHHH
T ss_pred ec-------CCCeEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 42 2347999999 79999999999999887654
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=163.66 Aligned_cols=294 Identities=13% Similarity=0.055 Sum_probs=191.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCc-c--CC-----CCCCHHHHHHHHHHHHHhcCCCCCC-CcEEE-cCCcHHHHHHHHHHHh
Q 041151 82 PADAIARAKHYLSLTSGGLGA-Y--SD-----SRGIPGVRKEVAEFIERRDGYPSDP-ELIFL-TDGASKGVMQTLNCVI 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~-Y--~~-----~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~-t~G~~~al~~~~~~l~ 151 (463)
|+++++++.+.+.++..+..+ + +. ..-+.+.|+.++++++ ++. ++|++ |.|++++++.++..++
T Consensus 25 p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~a~~~l~ 98 (377)
T 3e77_A 25 PHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLA------VPDNYKVIFLQGGGCGQFSAVPLNLI 98 (377)
T ss_dssp CHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCCeEEEEcCchHHHHHHHHHhcc
Confidence 999999999877653211111 1 10 1112466777788876 544 47888 5899999999999998
Q ss_pred cCC--CCEEEEc---------------cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 152 RGE--GDGVVLL---------------FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 152 ~~~--gd~Vlvp---------------~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
.+ ||+|++. .|..+ + +.+++.++ +.++..+++ ++++|.+++..|.||.+.+
T Consensus 99 -~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~-~~~~~~i~~------~t~lV~~~h~et~tG~~~p 170 (377)
T 3e77_A 99 -GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIP-DPSTWNLNP------DASYVYYCANETVHGVEFD 170 (377)
T ss_dssp -GGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCC-CGGGCCCCT------TCSCEEEESEETTTTEECS
T ss_pred -CCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCC-ChHHhccCC------CccEEEEeCccCchheEch
Confidence 55 8987664 45444 2 23456677 766655555 8999999999999999998
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
. +|+++++++++|.+.+.... +..+. +.+ +++.|..|++ |++| +|++++
T Consensus 171 i--------i~~~~~~~~~vD~~q~~g~~-----~id~~-----------~~~--~~~~s~~K~~-gp~G--~g~l~~-- 219 (377)
T 3e77_A 171 F--------IPDVKGAVLVCDMSSNFLSK-----PVDVS-----------KFG--VIFAGAQKNV-GSAG--VTVVIV-- 219 (377)
T ss_dssp S--------CCCCTTCCEEEECTTTTTSS-----CCCGG-----------GCS--EEEEEGGGTT-SCTT--CEEEEE--
T ss_pred h--------hhccCCCEEEEEcccccCCC-----CCchh-----------hcC--EEEEeccccc-CCCc--cEEEEE--
Confidence 4 47789999999999886432 23332 222 4678999999 8999 677775
Q ss_pred CChhHHHHHH----------hh---hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIY----------KI---ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDG 355 (463)
Q Consensus 291 ~~~~~~~~l~----------~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 355 (463)
++++++.+. .. .....+++....+++.++++ ...++ ++.+.++.++..+++++.
T Consensus 220 -~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~----------~l~~~GG~~~i~~~~~~l~~~l~~~ 288 (377)
T 3e77_A 220 -RDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLE----------WIKNNGGAAAMEKLSSIKSQTIYEI 288 (377)
T ss_dssp -ETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHH----------HHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHHH
Confidence 333321111 11 11223445555555555552 12232 567888899999999999
Q ss_pred hhcCCCcccccC----CceeEEeeeccCChhhHHHHhhcCCCC----hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEE
Q 041151 356 FNSCRNVVCNFT----EGAMYSFPQIRLPPKAIEAAKRAGKVP----DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRT 427 (463)
Q Consensus 356 L~~~pg~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRi 427 (463)
|+++||+.+.+. ..+..+.+.+ |. +.. +..++ ..+.++||.+++|... .+.+|+
T Consensus 289 L~~~~g~~~~~~~~~~rs~~ivsf~~--~~----------~~~~~~~~~~~l-~~l~~~Gi~~~~g~~~-----~g~iRi 350 (377)
T 3e77_A 289 IDNSQGFYVCPVEPQNRSKMNIPFRI--GN----------AKGDDALEKRFL-DKALELNMLSLKGHRS-----VGGIRA 350 (377)
T ss_dssp HHTSTTSEECCSCGGGBCSSEEEEEE--SS----------TTCCHHHHHHHH-HHHHHTTEESCBCCTT-----TCSEEE
T ss_pred HHhcCCceecCCCHHHcCCcEEEEEc--CC----------CCCchhHHHHHH-HHHHHCCcEEeCCCCc-----CCEEEE
Confidence 999888874331 1233333223 21 001 12333 3455789999887632 125999
Q ss_pred Eec--CCcCcHHHHHHHHHHHHHH
Q 041151 428 TIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 428 s~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
|+. ++++|++.+++.|++++++
T Consensus 351 S~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 351 SLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999 7899999999999988765
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=154.78 Aligned_cols=290 Identities=12% Similarity=0.124 Sum_probs=188.0
Q ss_pred cHHHHHHHHHHhhhcCCC-CCcc--CC-----CCCCHHHHHHHHHHHHHhcCCCCC-CCcEEE-cCCcHHHHHHHHHHHh
Q 041151 82 PADAIARAKHYLSLTSGG-LGAY--SD-----SRGIPGVRKEVAEFIERRDGYPSD-PELIFL-TDGASKGVMQTLNCVI 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~-~~~Y--~~-----~~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~-t~G~~~al~~~~~~l~ 151 (463)
|+++++++.+.+.++..+ ...| +. ..-+.+.|+.++++++ ++ +++|++ |+|++++++.++..++
T Consensus 17 ~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~------~~~~~~v~f~t~~~T~a~n~~~~~~~ 90 (361)
T 3m5u_A 17 PLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYE------LNDDYEVLFLQGGASLQFAMIPMNLA 90 (361)
T ss_dssp CHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCcHHHHHHHHHHhcC
Confidence 999999998877642111 1111 11 1123467777777776 54 448888 9999999999999996
Q ss_pred cCCCCEE--EEc-------------cCcee---c-CCCcc--cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 152 RGEGDGV--VLL-------------FHTTW---K-RQQIG--VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 152 ~~~gd~V--lvp-------------~g~~~---~-~~~~~--~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
+||++ ++. +|+++ + +.+.. +++ +. + +++ ++++|.+++..|.||.+.+
T Consensus 91 --~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~-~~-~--l~~------~t~lv~~~~~e~~tG~~~~ 158 (361)
T 3m5u_A 91 --LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIP-RV-E--FSD------NADYAYICSNNTIYGTQYQ 158 (361)
T ss_dssp --CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCC-CC-C--CCT------TSSEEEEESEETTTTEECS
T ss_pred --CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCC-hh-h--cCC------CCCEEEEeCCCCCcceeCC
Confidence 67754 332 56666 2 22222 455 65 3 655 7999999999999999876
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
. +++ +++++++|.+.+.... +..+ .+ ..+++.|..|++ |++| +|++++
T Consensus 159 ~--------i~~-~~~~~~vD~~q~~g~~-----~id~-----------~~--~d~~~~s~~K~~-gp~G--~g~l~~-- 206 (361)
T 3m5u_A 159 N--------YPK-TKTPLIVDASSDFFSR-----KVDF-----------SN--IALFYGGVQKNA-GISG--LSCIFI-- 206 (361)
T ss_dssp S--------CCC-CSSCEEEECGGGTTSS-----CCCC-----------TT--EEEEEEETTTTS-SCTT--CEEEEE--
T ss_pred c--------ccc-cCCEEEEEcccccCCC-----CCCc-----------cc--CCEEEEechhcc-CCCc--cEEEEE--
Confidence 2 344 4999999999886432 2222 22 237889999999 8899 788885
Q ss_pred CChhHHHHHHh-----------h--hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIYK-----------I--AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTD 354 (463)
Q Consensus 291 ~~~~~~~~l~~-----------~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~ 354 (463)
++++.+.+.. . .. ...+++.....++.++++ ...++ ++.+.++.++..+++++
T Consensus 207 -~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~----------~l~~~gG~~~i~~~~~~l~~~l~~ 275 (361)
T 3m5u_A 207 -RKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMD----------WLLNQGGLDKVHEKNSQKATMLYE 275 (361)
T ss_dssp -EHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH----------HHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHH----------HHHHccCHHHHHHHHHHHHHHHHH
Confidence 7777766643 1 11 123445555555555542 12233 56778888999999999
Q ss_pred HhhcCCCc-cccc-CC--ceeEEeeeccCCh-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 355 GFNSCRNV-VCNF-TE--GAMYSFPQIRLPP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 355 ~L~~~pg~-~~~~-~~--g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
.|++++|+ .... ++ ....+. +.+|. ..+ +.++ ...|.++||.+++|...- +.+|+|+
T Consensus 276 ~L~~~~g~~~~~~~~~~rs~~ivs--f~~~~~~~~----------~~~~-~~~L~~~gI~~~~g~~~~-----g~iRiS~ 337 (361)
T 3m5u_A 276 CIDLSNGFYKGHADKKDRSLMNVS--FNIAKNKDL----------EPLF-VKEAEEAGMIGLKGHRIL-----GGIRASI 337 (361)
T ss_dssp HHHTSTTSEEESSCGGGBCSSEEE--EEESSCTTH----------HHHH-HHHHHHTTEECCBCCTTT-----CSEEEEC
T ss_pred HHHHCCCeeeccCCHHHcCCeEEE--EECCCchhh----------hHHH-HHHHHHCCCEEecCCCcc-----CeEEEEc
Confidence 99998766 4322 21 222333 23332 100 2333 356788899998875421 2499999
Q ss_pred c--CCcCcHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
. ++.+|++.+++.|+++.++.
T Consensus 338 ~~~~t~edId~l~~al~~~~~~~ 360 (361)
T 3m5u_A 338 YNALNLDQVKTLCEFMKEFQGKY 360 (361)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc
Confidence 9 78999999999999887653
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-17 Score=159.88 Aligned_cols=292 Identities=11% Similarity=0.103 Sum_probs=185.4
Q ss_pred CcHHHHHHHHHHhhhcCCC------CCccCC--CCCCHHHHHHHHHHHHHhcCCCCCC-CcEEE-cCCcHHHHHHHHHHH
Q 041151 81 FPADAIARAKHYLSLTSGG------LGAYSD--SRGIPGVRKEVAEFIERRDGYPSDP-ELIFL-TDGASKGVMQTLNCV 150 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~------~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~-t~G~~~al~~~~~~l 150 (463)
+|+++++++.+.+.+...+ ....+. ..-+.+.|+.++++++ ++. ++|++ |+|++++++.++..+
T Consensus 38 ~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~ai~~l 111 (386)
T 3qm2_A 38 LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLN------IPSNYKVLFCHGGGRGQFAGVPLNL 111 (386)
T ss_dssp CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHT------CCTTEEEEEEESCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCCchHHHHHHHHhc
Confidence 3999999997665432110 111111 3456789999999997 543 47888 689999999999999
Q ss_pred hcCCCCEEEEc---------------cCcee---cCC--Ccc--cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC
Q 041151 151 IRGEGDGVVLL---------------FHTTW---KRQ--QIG--VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC 208 (463)
Q Consensus 151 ~~~~gd~Vlvp---------------~g~~~---~~~--~~~--~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~ 208 (463)
+ .+||+|++. .| .+ +.+ .++ +++ +.++.++++ ++++|.+++-.|.||.+
T Consensus 112 ~-~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~-~~~~~~l~~------~t~lV~~~h~et~tG~~ 182 (386)
T 3qm2_A 112 L-GDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVK-PMREWQLSD------NAAYLHYCPNETIDGIA 182 (386)
T ss_dssp C-TTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEEC-CGGGCCCCT------TCSCEEECSEETTTTEE
T ss_pred c-CCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCc-hHHHhhcCC------CCcEEEEECCcCCcCEe
Confidence 8 899987643 55 55 332 233 677 778777765 89999888888999996
Q ss_pred -CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 209 -LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 209 -~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
.+.++ | + +++++++|.+.+.... +..+. +.+ +.+.|..|++ |++| +|+++
T Consensus 183 i~pi~~---i---~--~g~~~~vDa~qs~g~~-----pidv~-----------~~~--~~~~s~hK~l-GP~G--~g~l~ 233 (386)
T 3qm2_A 183 IDETPD---F---G--PEVVVTADFSSTILSA-----PLDVS-----------RYG--VIYAGAQKNI-GPAG--LTLVI 233 (386)
T ss_dssp CCCCCC---C---C--TTCCEEEECTTTTTSS-----CCCGG-----------GCS--EEEEETTTTT-CCTT--EEEEE
T ss_pred cCchhh---h---c--CCCEEEEEcccccCCC-----CCCcc-----------ccC--EEEEeccccc-CCCc--cEEEE
Confidence 55333 3 2 7999999999886322 23332 222 4668999999 8889 78888
Q ss_pred ecCCChhHHHHHH----------hh---hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHH
Q 041151 288 MTNIPPKTVDEIY----------KI---ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMM 352 (463)
Q Consensus 288 ~~~~~~~~~~~l~----------~~---~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l 352 (463)
+ ++++++.+. .. .....+++.....++.++++ ...++ ++.+.++.++.++++
T Consensus 234 v---~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~----------~~~~~gG~~~i~~~~~~l~~~l 300 (386)
T 3qm2_A 234 V---REDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFK----------WLKAQGGVAAMHKINQQKAELL 300 (386)
T ss_dssp E---EGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHH----------HHHHHTHHHHHHHHHHHHHHHH
T ss_pred E---CHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHHHH
Confidence 6 444422111 11 11123455555556655552 22333 567888889999999
Q ss_pred HHHhhcCCCc-ccc-cC--CceeEEeeeccCCh-hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEE
Q 041151 353 TDGFNSCRNV-VCN-FT--EGAMYSFPQIRLPP-KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRT 427 (463)
Q Consensus 353 ~~~L~~~pg~-~~~-~~--~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRi 427 (463)
++.|+++ |+ ... .+ .....+. +.+|. +. +..+. ..|.++||.+++|...- +.+|+
T Consensus 301 ~~~l~~~-~~~~~~~~~~~rs~~iv~--f~~~~~~~-----------~~~~~-~~L~~~gI~~~~g~~~~-----~~iRi 360 (386)
T 3qm2_A 301 YGVIDNS-DFYRNDVAQANRSRMNVP--FQLADNTL-----------DKVFL-EESFAAGLHALKGHRVV-----GGMRA 360 (386)
T ss_dssp HHHHHTC-SSEECCBCGGGBCSSEEE--EEESSGGG-----------HHHHH-HHHHHTTEECCBCCTTT-----CSEEE
T ss_pred HHHHHHC-CCcccCCCHHHcCceEEE--EECCCccc-----------cHHHH-HHHHHCCCEEeCCCCCc-----CeEEE
Confidence 9999987 54 221 11 1222333 23332 11 33443 34788999998875432 24999
Q ss_pred Eec--CCcCcHHHHHHHHHHHHHH
Q 041151 428 TIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 428 s~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
|+. ++++|++.+++.|+++.++
T Consensus 361 S~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 361 SIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHHHHh
Confidence 999 6899999999999988765
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=167.32 Aligned_cols=297 Identities=10% Similarity=0.044 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee-----cCCC
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW-----KRQQ 170 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~-----~~~~ 170 (463)
+.++++.+|++++ ....+++++|++.++..++.+++ +|||.|+++ .|+++ ..+.
T Consensus 197 i~eaE~~lA~~fG-------a~~a~~v~nGts~An~~ai~al~-~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~ 268 (715)
T 3n75_A 197 HKEAEQYIARVFN-------ADRSYMVTNGTSTANKIVGMYSA-PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNA 268 (715)
T ss_dssp HHHHHHHHHHHHT-------CSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCT
T ss_pred HHHHHHHHHHHhC-------CCCceEECcHHHHHHHHHHHHhC-CCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccc
Confidence 4688999999986 23467788998999999999998 999999998 56665 1233
Q ss_pred ccc---------ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccc-cC
Q 041151 171 IGV---------LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI-YQ 240 (463)
Q Consensus 171 ~~~---------d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~-~~ 240 (463)
+++ |+ +.|++++++..+. +.++++++++| ||+|.+++ +++|+++|++++ +++||+|.... |.
T Consensus 269 ~gi~~~i~~~~~d~-e~Le~~l~~~~~~-k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~~f~ 340 (715)
T 3n75_A 269 YGILGGIPQSEFQH-ATIAKRVKETPNA-TWPVHAVITNS-TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFS 340 (715)
T ss_dssp TCCBCCCCGGGGSH-HHHHHHHHHSTTC-CSCSEEEEESS-CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTGGGS
T ss_pred cccccCcccccCCH-HHHHHHHhhCcCc-cCceEEEEECC-CCCCccCC---HHHHHHHhCcCc--EEEccccccccccC
Confidence 443 89 9999999862100 01348999999 99999998 566677777663 78999998653 42
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh--hcccCChHHHHHHH
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--IALSPNVPAQIFMG 318 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~q~~~~ 318 (463)
+..+..+.... +. ..+.-++++.|+||+++|+++ .|++.+. +.-....+.+... .+.+++.+..+++.
T Consensus 341 ~~~~~~~al~~--g~----~aD~vii~~~S~hKtL~gltq--gs~i~v~--~~i~~~~~~~~~~~~~STSpsy~~~Asld 410 (715)
T 3n75_A 341 PIYEGKCGMSG--GR----VEGKVIYETQSTHKLLAAFSQ--ASMIHVK--GDVNEETFNEAYMMHTTTSPHYGIVASTE 410 (715)
T ss_dssp GGGTTSSTTSS--SC----CTTCEEEEEECHHHHSSCCTT--CEEEEEE--SCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred Ccccccccccc--Cc----CCCEEEEEEecccccccCCCC--eeEEEeC--chhhHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 11110111000 00 012123679999999843223 6888762 2222344544443 23444554444444
Q ss_pred HhcCCCCCCCchHHHHHH--HHHHHHHHHHHHHHHHHHHhhcCCC------cccccCC----------------------
Q 041151 319 LMVNPLKPGDISYEQFVR--ESKGILESLRRRARMMTDGFNSCRN------VVCNFTE---------------------- 368 (463)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~pg------~~~~~~~---------------------- 368 (463)
.+++ +++ +..++++++.++.+.+++.|+++++ +++..++
T Consensus 411 aA~~-----------~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~ 479 (715)
T 3n75_A 411 TAAA-----------MMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNI 479 (715)
T ss_dssp HHHH-----------HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTC
T ss_pred HHHH-----------HHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccccccccc
Confidence 4431 221 2344667777777788887776532 2332221
Q ss_pred -ceeEEe--ee--ccCChhhHH-HHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHH
Q 041151 369 -GAMYSF--PQ--IRLPPKAIE-AAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMES 442 (463)
Q Consensus 369 -g~~~~~--~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~ 442 (463)
.+++.+ .+ +..+.-..+ .....|+ ....+.+.|+++||.+.-.+.+.. .+=++++.+.+++++++++
T Consensus 480 ~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi--~g~~~~~~L~~~~I~~E~~d~~~v-----l~l~s~g~~~~~~~~L~~a 552 (715)
T 3n75_A 480 DNEHMYLDPIKVTLLTPGMEKDGTMSDFGI--PASIVAKYLDEHGIVVEKTGPYNL-----LFLFSIGIDKTKALSLLRA 552 (715)
T ss_dssp CSSSEEECTTEEEEECSCBCTTSCBCSSCC--CHHHHHHHHHHTTCCCSEEETTEE-----EEECCTTCCHHHHHHHHHH
T ss_pred ccCcccCCCeEEEEEcCCCCCCCccccCCC--cHHHHHHHHHHCCCEEEecCCCcE-----EEEeCCCCCHHHHHHHHHH
Confidence 011110 00 111110000 0000011 234466778889998876554332 2344555777888888888
Q ss_pred HHHHHHH
Q 041151 443 FKKFNDE 449 (463)
Q Consensus 443 l~~~l~~ 449 (463)
|.++-+.
T Consensus 553 L~~~~~~ 559 (715)
T 3n75_A 553 LTDFKRA 559 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-15 Score=147.53 Aligned_cols=310 Identities=11% Similarity=0.057 Sum_probs=181.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+++++.+++... .+...+..-..+|.+.|++.+. ..+.|++++++++|+..+++.... ...++|+.
T Consensus 105 hp~v~~Av~~q~~~~---~~~~~~~~~~~~lae~l~~~~p-------~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~ 174 (454)
T 4ao9_A 105 APEIRDAVIEAMQGG---INLTGHNLLEGRLARLICERFP-------QIEQLRFTNSGTEANLMALTAALHFTGRRKIVV 174 (454)
T ss_dssp CHHHHHHHHHHHHTC---SCCCSEESSHHHHHHHHHHHST-------TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHhcC---CCccCCcHHHHHHHHHHHHhCC-------CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEE
Confidence 789999999888762 1111122223455555555542 457999999999999999987631 12355555
Q ss_pred c----cCcee-----------cCC---CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccC-CCHHHHHHHHHHh
Q 041151 161 L----FHTTW-----------KRQ---QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQC-LSEANLREILRFC 221 (463)
Q Consensus 161 p----~g~~~-----------~~~---~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a 221 (463)
. +|... +.+ ..--|. +.+++.+++. ++++.+|++.-.....|.+ .+++-+++|.++|
T Consensus 175 ~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~-~~l~~~l~~~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc 250 (454)
T 4ao9_A 175 FSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDA-QTARAQIERH---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESA 250 (454)
T ss_dssp ETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCH-HHHHHHHHHT---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHH
T ss_pred EeCCcCCccccccccccCccCCCCcccCCCchH-HHHHHHHhhc---CCceEEEEeccccCCCCccCCchhhHHHHHHHH
Confidence 4 33222 000 001266 8999988763 2256777665334445755 4677799999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
++||+++|+||++.. .. + . .+.. ..+|+ ..+ | .+++|.+ | .|+.+|.++ +.+++.+.+..
T Consensus 251 ~~~g~lLI~DEV~tG-R~-G-~---~~a~--e~~gv--~PD---i--~t~gK~l-g-gG~Piga~~---~~~ei~~~~~~ 310 (454)
T 4ao9_A 251 TQVGALLVFDEVMTS-RL-A-P---HGLA--NKLGI--RSD---L--TTLGKYI-G-GGMSFGAFG---GRADVMALFDP 310 (454)
T ss_dssp HHHTCEEEEECTTGG-GG-S-T---TCHH--HHHTC--CCS---E--EEEEGGG-G-TTSSCEEEE---ECHHHHGGGCT
T ss_pred hhcCCEEEEECCCcC-CC-c-c---ccch--hccCC--CCc---E--EEecccc-C-CCCcceeee---eHHHHHHHHhh
Confidence 999999999999973 22 1 1 1111 12222 222 2 4789999 4 689999998 58888887753
Q ss_pred h-----hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcc-cccCCceeE
Q 041151 302 I-----ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---RNVV-CNFTEGAMY 372 (463)
Q Consensus 302 ~-----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~-~~~~~g~~~ 372 (463)
. ...+++.++++..++.+.|+-. + .+++.+++.++-++|.+.|+++ .++. -+...|.++
T Consensus 311 ~~~~~~h~~T~~gnPla~AAala~L~~l-----------~-~~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~ 378 (454)
T 4ao9_A 311 RTGPLAHSGTFNNNVMTMAAGYAGLTKL-----------F-TPEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLM 378 (454)
T ss_dssp TTCSCCCCCTTTTCHHHHHHHHHHHHHT-----------S-CHHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEE
T ss_pred ccCCccccCCCCCCHHHHHHHHHHHHHH-----------h-ccChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEE
Confidence 2 2235677888888887776421 1 1234445555555666655542 0211 122233333
Q ss_pred Eeeec-cCCh-hhHHHHhhcCCCCh--HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 373 SFPQI-RLPP-KAIEAAKRAGKVPD--VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 373 ~~~~~-~~~~-~~~~~~~~~~~~~~--~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
-+ .+ +.+. .. ......+. ...+...+.++||++.|.. ++.++...+++||++++++|++++.
T Consensus 379 gi-~f~~~~~~~~----~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~---------~~~~s~~~T~~dId~~l~al~~~l~ 444 (454)
T 4ao9_A 379 NA-HFVQGDVRSS----EDLAAVDGRLRQLLFFHLLNEDIYSSPRG---------FVVLSLPLTDADIDRYVAAIGSFIG 444 (454)
T ss_dssp EE-ESCCSCCCSG----GGGTTCCHHHHHHHHHHHHHTTEECCTTC---------EEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred EE-EEecCCCCCH----HHHHhhhHHHHHHHHHHHHHCCEEEcCCC---------CEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 21 11 1110 00 00000111 1222334567899987721 4566666889999999999999998
Q ss_pred HHH
Q 041151 449 EFM 451 (463)
Q Consensus 449 ~~~ 451 (463)
++.
T Consensus 445 ~~~ 447 (454)
T 4ao9_A 445 GHG 447 (454)
T ss_dssp HSG
T ss_pred hcc
Confidence 753
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-13 Score=136.11 Aligned_cols=320 Identities=13% Similarity=0.064 Sum_probs=187.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCC-CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-----c-CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRG-IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-----R-GE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g-~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----~-~~ 154 (463)
++.+.+++.+++.+. ..|+...+ ..+....+|+.+.+... .+.+.|++++++++|++.+++... + .+
T Consensus 85 ~p~v~~Ai~~q~~~l----~~~~~~~~~~~~~~~~lAe~L~~~~p--~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~ 158 (473)
T 4e3q_A 85 HKGLIDAAKAQYERF----PGYHAFFGRMSDQTVMLSEKLVEVSP--FDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKP 158 (473)
T ss_dssp CHHHHHHHHHHHHHC----CCCCCCTTEEEHHHHHHHHHHHHHSS--CSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHhc----ccccccccccCHHHHHHHHHHHhhCC--CCccEEEEeCchHHHHHHHHHHHHHHHHhcCCC
Confidence 788999999888763 12322222 23444556666654422 234689999999999999998642 1 23
Q ss_pred CC-EEEEc----cCcee--------------------------cC----CCccc--------ChHHHHHHHHHHHHhcCC
Q 041151 155 GD-GVVLL----FHTTW--------------------------KR----QQIGV--------LIINDLQQSVAQARSKGI 191 (463)
Q Consensus 155 gd-~Vlvp----~g~~~--------------------------~~----~~~~~--------d~~~~l~~~l~~~~~~~~ 191 (463)
+. +|+.- +|... +. ...+- .. +++++.+..... .
T Consensus 159 ~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~~~--~ 235 (473)
T 4e3q_A 159 QKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLA-RELEETIQREGA--D 235 (473)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHH-HHHHHHHHHHCG--G
T ss_pred CcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHH-HHHHHHHHhhCC--C
Confidence 43 44443 22211 00 00000 12 345555544311 1
Q ss_pred ceeEEEEECCCCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEec
Q 041151 192 TVRAMVIINPGNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHT 270 (463)
Q Consensus 192 ~~~~i~l~~p~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 270 (463)
++-+|++.--..-.|.+ .+++-+++|.++|++||+++|.||+...|.-. +. -+.. ..+|+ ..+ | -+
T Consensus 236 ~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRt-G~---~fa~--e~~gv--~PD---i--~t 302 (473)
T 4e3q_A 236 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRT-GN---TWGC--VTYDF--TPD---A--II 302 (473)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTT-SS---SCHH--HHTTC--CCS---E--EE
T ss_pred ceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcc-cc---hhHH--HhcCC--CCC---h--HH
Confidence 45666555333335654 45667999999999999999999999875221 11 1111 12222 222 2 46
Q ss_pred CCcccCCCCCceeEEEEecCCChhHHHHHHhh--------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHH
Q 041151 271 VSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI--------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGIL 342 (463)
Q Consensus 271 ~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (463)
++|.+ +-.++.+|.++ +++++.+.+... ...+++.++++..++.+.|+ .++ .+.+.
T Consensus 303 ~~K~l-~gG~~Pl~av~---~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~-----------~i~-~~~l~ 366 (473)
T 4e3q_A 303 SSKNL-TAGFFPMGAVI---LGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAID-----------VVM-NEGLA 366 (473)
T ss_dssp ECGGG-GTTSSCCEEEE---ECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHH-----------HHH-HSSHH
T ss_pred hcccc-cCCCCCccccc---ccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhh-----------hhc-cccHH
Confidence 88999 53338999999 488898887543 12467778888888877763 222 22355
Q ss_pred HHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCC---ChHHHHHHHHHhcCeEeeCCCCC
Q 041151 343 ESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV---PDVFYCLRLLEATGISTVPGSGF 416 (463)
Q Consensus 343 ~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f 416 (463)
++.++.-++|.+.|+++ |.+.-+...| ++.-+.+.-+.. +..... .-...+...+.++||+++|..
T Consensus 367 ~~~~~~g~~l~~~L~~l~~~~~v~~vRG~G-l~~gielv~~~~-----~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g-- 438 (473)
T 4e3q_A 367 ENVRRLAPRFEERLKHIAERPNIGEYRGIG-FMWALEAVKDKA-----SKTPFDGNLSVSERIANTCTDLGLICRPLG-- 438 (473)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEEEEEEET-TEEEEEECSBTT-----TTBCCCGGGCHHHHHHHHHHHTTEECEEET--
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeEEeecc-eEEEEEEecCcc-----ccccccccHHHHHHHHHHHHHCCcEEEecC--
Confidence 55666666677666653 4443233333 333222211100 000010 113344566778899998732
Q ss_pred CCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 417 GQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 417 ~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+.+|++.. .+++++++++++|.++++++.++
T Consensus 439 ------~~i~l~PPL~it~~eid~~~~~l~~al~~v~ae 471 (473)
T 4e3q_A 439 ------QSVVLCPPFILTEAQMDEMFDKLEKALDKVFAE 471 (473)
T ss_dssp ------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 26899877 78999999999999999988765
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-12 Score=123.36 Aligned_cols=312 Identities=13% Similarity=0.045 Sum_probs=189.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHHHHHhcC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~ 153 (463)
++.++++.-..+.+. ...+||. .+-..++.....+...+.+|.....- ||..-+| ++|...++.+|+ +
T Consensus 67 S~aV~~a~gS~ltnK--YaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SG-s~AN~avy~All-~ 142 (490)
T 3ou5_A 67 SRAALEALGSCLNNK--YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG-SPANLAVYTALL-Q 142 (490)
T ss_dssp CHHHHHHHTSGGGTC--CCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSH-HHHHHHHHHHHC-C
T ss_pred CHHHHHHhcCccccc--ccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCH-HHHHHHHHHHHc-C
Confidence 778888887776652 2334432 22223444444445556666443211 5666666 678999999998 9
Q ss_pred CCCEEEEc---cCcee-------------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC
Q 041151 154 EGDGVVLL---FHTTW-------------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT 205 (463)
Q Consensus 154 ~gd~Vlvp---~g~~~-------------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt 205 (463)
|||+|+.. .|+.+ ..+...+|. +++++..... +||+|+.-.-.+|
T Consensus 143 PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDy-d~~~~~A~~~-----kPklIi~G~SaY~- 215 (490)
T 3ou5_A 143 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDY-NQLALTARLF-----RPRLIIAGTSAYA- 215 (490)
T ss_dssp -CCCEECBC----------------------------CBCEETTTTEECH-HHHHHHHHHH-----CCSEEEECCSSCC-
T ss_pred CCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccH-HHHHHHHhhc-----CCCeEEECCccCc-
Confidence 99999885 22221 234566999 9999999887 9999987665555
Q ss_pred ccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 206 G~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
..++ .+++.++|.+.|.++++|-+|-......+ .+++.... .+ |+..|.+|+| .|=|.|.
T Consensus 216 -r~id---~~~~reIAd~vGA~Lm~DmAHiaGLVA~g-~~psP~~~--------AD----vVTtTTHKTL---rGPrGG~ 275 (490)
T 3ou5_A 216 -RLID---YARMREVCDEVKAHLLADMAHISGLVAAK-VIPSPFKH--------AD----IVTTTTHKTL---RGARSGL 275 (490)
T ss_dssp -SCCC---HHHHHHHHHHHTCEEEEECGGGHHHHHTT-SSCCGGGT--------CS----EEEEESSSTT---CSCSCEE
T ss_pred -cccC---HHHHHHHHhhcccEEEechhhhhhhhccc-ccCCcccc--------ce----EEeccccccc---cCCCceE
Confidence 4455 55666666689999999999954332122 22232221 22 7889999998 6888999
Q ss_pred EEecCCC------------hhHHHHHHhhh-hhcccCChHHHHHHHHh-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041151 286 FEMTNIP------------PKTVDEIYKIA-SIALSPNVPAQIFMGLM-VNPLKPGDISYEQFVRESKGILESLRRRARM 351 (463)
Q Consensus 286 ~~~~~~~------------~~~~~~l~~~~-~~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (463)
|.+.++- .++.+++.+.- ...-+.+.....++.+. +. +....+.+.-.++..+|.+.
T Consensus 276 Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~---------Ea~~p~fk~Ya~qVv~NAka 346 (490)
T 3ou5_A 276 IFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALK---------QACTPMFREYSLQVLKNARA 346 (490)
T ss_dssp EEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHH---------HHHSHHHHHHHHHHHHHHHH
T ss_pred EEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHH---------HHHhHhHHHHHHHHHHHHHH
Confidence 9862210 04566665543 32223333333333222 21 11112233445567888999
Q ss_pred HHHHhhcCCCcccccC-CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee----CCCCCCCCCCCcEEE
Q 041151 352 MTDGFNSCRNVVCNFT-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV----PGSGFGQKEGIFHLR 426 (463)
Q Consensus 352 l~~~L~~~pg~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~lR 426 (463)
|.+.|.+. |++++.. ..+-.+++++. +.+ -+...+..+|++.||.+. |+.. .+-....||
T Consensus 347 LA~~L~~~-G~~vvsGgTdnHlvLvDl~-~~g-----------~tG~~ae~~Le~agItvNkN~iP~D~--sp~~~SGiR 411 (490)
T 3ou5_A 347 MADALLER-GYSLVSGGTDNHLVLVDLR-PKG-----------LDGARAERVLELVSITANKNTCPGDR--SAITPGGLR 411 (490)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEECG-GGT-----------CCHHHHHHHHHHTTEECEEECCTTCC--CSSSCSEEE
T ss_pred HHHHHHhC-CCeeecCCCCceEEEEecc-ccC-----------CCHHHHHHHHHHcCcEECCCCCCCCC--CCCCCCeeE
Confidence 99999987 8888742 23346666664 111 144557788999999986 5441 111223699
Q ss_pred EEec------CCcCcHHHHHHHHHHHHH
Q 041151 427 TTIL------PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 427 is~~------~~~e~i~~~~~~l~~~l~ 448 (463)
|... ..++|+++..+-|.+++.
T Consensus 412 iGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 412 LGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp EESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9987 456788888777777664
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-13 Score=135.86 Aligned_cols=320 Identities=12% Similarity=0.016 Sum_probs=180.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+++.........+.+. +...++++.+.+.... -..+.+++++++++|+..+++.... .....|+.
T Consensus 82 ~p~v~~Ai~~q~~~~~~~~~~~~~~----~~~~~lae~L~~~~p~-~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~ 156 (456)
T 4atq_A 82 DPAVVAAVQEAAAHFTHTCFMVTPY----EGYVAVTEQLNRLTPG-DHAKRTVLFNSGAEAVENAVKVARLATGRDAVVA 156 (456)
T ss_dssp CHHHHHHHHHHHHHCSCCTTTTSCC----HHHHHHHHHHHHHSSC-SSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CHHHHHHHHHHHhhccCcccCccCc----HHHHHHHHHHHHhCCC-CCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEE
Confidence 7899999988887632111122222 2333444544433110 0235789999999999999986531 23345555
Q ss_pred c----cCcee--------------------------c-------CCCcccChHHHHHHHHHHHHh--cCCceeEEEEECC
Q 041151 161 L----FHTTW--------------------------K-------RQQIGVLIINDLQQSVAQARS--KGITVRAMVIINP 201 (463)
Q Consensus 161 p----~g~~~--------------------------~-------~~~~~~d~~~~l~~~l~~~~~--~~~~~~~i~l~~p 201 (463)
. +|... + ......+. +.+++.+..... .+.++.+|++.--
T Consensus 157 ~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~iAAvivEPi 235 (456)
T 4atq_A 157 FDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGA-EAAKRAITMIEKQIGGDQVAAIIIEPI 235 (456)
T ss_dssp ETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHH-HHHHHHHHHHHHHTCGGGEEEEEECSS
T ss_pred EecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHH-HHHHHHHHHHHHhhcCCceEEEEeccc
Confidence 4 22211 0 00011123 444444432211 1125777776633
Q ss_pred CCCCccC-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 202 GNPTGQC-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 202 ~NPtG~~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
..-.|.+ .+.+-+++|.++|++||+++|.||+...+.-. +.. ... ..+|+ ..+ | -+++|.+ | .|
T Consensus 236 qg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRt-G~~-~a~----e~~gv--~PD---i--vt~gK~l-g-gg 300 (456)
T 4atq_A 236 QGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRT-GEW-FAV----DHEGV--VPD---I--ITMAKGI-A-GG 300 (456)
T ss_dssp BTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSS-SGG----GGTTC--CCS---E--EEECGGG-G-TT
T ss_pred cCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCc-ccc-ccc----cccCC--CCc---h--hhhhhcc-c-Cc
Confidence 3335654 56678999999999999999999999875221 111 111 12222 221 3 4678998 4 68
Q ss_pred ceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 281 QRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
+.+|.++ +.+++.+.+..... .+++.++++..++.+.|+ .++ .+++.++.++.-+++.+.|+++
T Consensus 301 ~P~~av~---~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~-----------~i~-~~~l~~~~~~~g~~l~~~L~~l 365 (456)
T 4atq_A 301 LPLSAIT---GRADLLDAVHPGGLGGTYGGNPVACAAALAAID-----------TME-QHDLNGRARHIEELALGKLREL 365 (456)
T ss_dssp SSCEEEE---EEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH-----------HHH-HTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeE---ecHHHHhcccccCCCCCCCCChHHHHhhHHHHH-----------HHh-hccHHHHHHHHHHHHHHHHHHH
Confidence 9999998 47887777755442 578889999988888873 222 1234444455555555555432
Q ss_pred ----CC-----cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec
Q 041151 360 ----RN-----VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL 430 (463)
Q Consensus 360 ----pg-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~ 430 (463)
+. +.-+... |+++-+.+..+... ....+-...+...+.++||++.++..++ +.+||...
T Consensus 366 ~~~~~~~~~~~v~~VRG~-Gl~~giel~~~~~~------~~~~~~~~~v~~~~~~~Gvl~~~~g~~~-----~~irl~Pp 433 (456)
T 4atq_A 366 AAELSAGGGSVVGDIRGR-GAMLAIELVQPGSK------EPNAELTKAVAAACLKEGVIILTCGTYG-----NVIRLLPP 433 (456)
T ss_dssp HHHCC-----CEEEEEEE-TTEEEEEEBCTTSC------CBCHHHHHHHHHHHHHTTEECEEECTTS-----CEEEECCC
T ss_pred HHhcccccCCceEEeeec-ceEEEEEEecCCCC------CcCHHHHHHHHHHHHHCCCEEEecCCCC-----CEEEEECC
Confidence 21 1111222 33444333222110 0000012234455678899998754332 36999987
Q ss_pred --CCcCcHHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~~ 449 (463)
.+++++++++++|.++++.
T Consensus 434 L~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 434 LVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 6889999999999998864
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-11 Score=120.42 Aligned_cols=299 Identities=9% Similarity=0.037 Sum_probs=173.6
Q ss_pred HHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCC----CCEEEEc-------------cCcee-------cCCCcc
Q 041151 117 AEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGE----GDGVVLL-------------FHTTW-------KRQQIG 172 (463)
Q Consensus 117 a~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~----gd~Vlvp-------------~g~~~-------~~~~~~ 172 (463)
-+|++ ..|++ .....++++|+|.++..++.+.+ ++ |+.|++| .|.++ ..+..+
T Consensus 123 ld~L~-~~G~~-~~~~~flVnGsTgg~lamilaa~-r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~ 199 (501)
T 3hl2_A 123 LDIIK-LAGVH-TVANCFVVPMATGMSLTLCFLTL-RHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR 199 (501)
T ss_dssp HHHHH-HTTCT-TCCEEEEESSCHHHHHHHHHHHH-HHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEE
T ss_pred HHHHH-HcCCC-CCCcEEEECcHHHHHHHHHHHHc-CcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccC
Confidence 34554 44876 33479999999988887777776 43 4999999 66666 245688
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
+|+ +.++++|++. +.+..+++++ .+.|-.+.+- ++++|+++|++||+++++|+||..... ....+..-
T Consensus 200 id~-e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~d---dI~eIaeIch~~gIpllVDeAhGah~~----~~~~lp~s 268 (501)
T 3hl2_A 200 TDL-KAVEAKVQEL---GPDCILCIHSTTSCFAPRVPD---RLEELAVICANYDIPHIVNNAYGVQSS----KCMHLIQQ 268 (501)
T ss_dssp ECH-HHHHHHHHHH---CGGGEEEEEEECSCCTTBCCC---CHHHHHHHHHHHTCCEEEECTTCTTCH----HHHHHHHH
T ss_pred CCH-HHHHHHHHhc---CCCcEEEEEecCCCCCCcccc---cHHHHHHHHHHcCCeEEEeCcchhhhh----hhhhhHHH
Confidence 999 9999999985 1133444444 4455333443 489999999999999999999976421 01111111
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchH
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISY 331 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~ 331 (463)
.-++ +. -.+++.|.+|++. ++ +..|.+.+ .++++++.+..... ...++.++......++.
T Consensus 269 A~~~----Gr--AD~vVqS~HK~ll-vp-IGG~ii~~--~d~e~l~~~~~~yP-Gr~S~Spsldl~~tLL~--------- 328 (501)
T 3hl2_A 269 GARV----GR--IDAFVQSLDKNFM-VP-VGGAIIAG--FNDSFIQEISKMYP-GRASASPSLDVLITLLS--------- 328 (501)
T ss_dssp HHHH----SC--CCEEEEEHHHHHC-CC-SSCEEEEE--SCHHHHHHHHHTSC-SCBCSHHHHHHHHHHHH---------
T ss_pred HHhc----CC--CcEEEecccccce-ee-cCceEEEe--CCHHHHHHHHHhCC-CCCCCcHHHHHHHHHHH---------
Confidence 1122 21 1268899999973 33 33455544 47777777755443 11223333333333331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCccccc-CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC
Q 041151 332 EQFVRESKGILESLRRRARMMTDGFNSC---RNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG 407 (463)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 407 (463)
--.+-.+++.++..++.++|.+.|+++ -|-++.. +.....+-+.+.-... ....+...+-..|..++
T Consensus 329 -lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~--------~~~~~~t~~gs~Lf~r~ 399 (501)
T 3hl2_A 329 -LGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE--------HRDKAVTQLGSMLFTRQ 399 (501)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT--------TTSCHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEecccccc--------cccccHHHHHHHHHhcC
Confidence 012223455566666677777777664 2444443 3333444433431100 00112333444455556
Q ss_pred eE----eeCCC----------CCCCCC---CCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhcccc
Q 041151 408 IS----TVPGS----------GFGQKE---GIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYEDYR 458 (463)
Q Consensus 408 I~----v~pg~----------~f~~~~---~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~~~~ 458 (463)
|. |.+|. .||... ...|+=++.+ .+.+|++.++++|.+++.+++++..+..
T Consensus 400 vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 469 (501)
T 3hl2_A 400 VSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKES 469 (501)
T ss_dssp CCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 52 34555 666521 1357888887 8899999999999999999987765544
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-11 Score=118.92 Aligned_cols=302 Identities=9% Similarity=0.046 Sum_probs=168.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcC---CCCEEEEc-------------cCcee------
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRG---EGDGVVLL-------------FHTTW------ 166 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~---~gd~Vlvp-------------~g~~~------ 166 (463)
...+.+.+..++.+..|++ +....++++|+|.++..++.+.++. +++.|++| .|..+
T Consensus 96 ~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~ 174 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV 174 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEee
Confidence 3467777777777777865 2346788888885555555555421 38999998 56654
Q ss_pred -cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECC-CCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCC
Q 041151 167 -KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINP-GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERP 244 (463)
Q Consensus 167 -~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p-~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~ 244 (463)
..+...+|+ +.|+++|++... ..+++++.+| ++.+|.+-+ +++|+++|++||+++++|++|..... .
T Consensus 175 ~~~~~~~id~-~~le~aI~~~~~---~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~~----~ 243 (450)
T 3bc8_A 175 LEGDELRTDL-KAVEAKIQELGP---EHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSS----K 243 (450)
T ss_dssp EETTEEECCH-HHHHHHHHHHCG---GGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCH----H
T ss_pred ecCccCCcCH-HHHHHHHHhcCC---CCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchhhh----h
Confidence 245688999 999999987521 2456666666 444456644 88999999999999999999985311 0
Q ss_pred ccchH-HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCC
Q 041151 245 FVSSK-KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNP 323 (463)
Q Consensus 245 ~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~ 323 (463)
...+. .... .+ .. ..++.|.+|++..+.| .+++.+ .+++.++.+..... ...++.++...+..++.
T Consensus 244 ~~~l~~~a~~-~~---~A---D~~v~S~HK~l~a~~~--~~~l~~--rd~~~~~~~~~~~~-g~~s~SpsL~l~~~l~~- 310 (450)
T 3bc8_A 244 CMHLIQQGAR-VG---RI---DAFVQSLDKNFMVPVG--GAIIAG--FNEPFIQDISKMYP-GRASASPSLDVLITLLS- 310 (450)
T ss_dssp HHHHHHHHHH-HS---CC---CEEEEEHHHHHSCCSS--CEEEEE--SCHHHHHHHHHHSC-SCBCSHHHHHHHHHHHH-
T ss_pred hHhHHHHHhc-cc---CC---CEEEECCccCCCchhc--cEEEEe--cCHHHHHHHHHHhh-cCCcccHHHHHHHHHHH-
Confidence 11111 1110 00 11 2577999999843334 677765 46777666644332 11223444333333321
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCc---eeEEeeecc-CChhhHHHHhhcCCCChH
Q 041151 324 LKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEG---AMYSFPQIR-LPPKAIEAAKRAGKVPDV 396 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g---~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 396 (463)
...+..++..++..++.+++.+.|++++ |..+...+. ...+. ++ +.... ..|..
T Consensus 311 ---------~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~--l~~~~~~~--------~~D~t 371 (450)
T 3bc8_A 311 ---------LGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMT--LKTIDGHH--------DKAVT 371 (450)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEE--CTTTSSSS--------SCHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceee--cccccccc--------cCCCc
Confidence 0111123333344555667777776665 666654321 11121 11 00000 00122
Q ss_pred HHHHHHHHhcC---eEeeC--------C---CCCCCC---CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHHhc
Q 041151 397 FYCLRLLEATG---ISTVP--------G---SGFGQK---EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQYE 455 (463)
Q Consensus 397 ~~~~~ll~~~g---I~v~p--------g---~~f~~~---~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~~~ 455 (463)
.+... +...| .-+.+ | ..|+.. ....++=+.++ .+++++++++++|+++.++++++..
T Consensus 372 kl~i~-~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~~~~~ 448 (450)
T 3bc8_A 372 QLGSM-LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQT 448 (450)
T ss_dssp HHHHH-HHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeEEE-ecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33322 33333 33321 1 122221 12345555555 8899999999999999888877654
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=9.5e-13 Score=142.72 Aligned_cols=214 Identities=13% Similarity=0.104 Sum_probs=130.2
Q ss_pred ceeEEEEECC-CCCCccCC-CHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEe
Q 041151 192 TVRAMVIINP-GNPTGQCL-SEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFH 269 (463)
Q Consensus 192 ~~~~i~l~~p-~NPtG~~~-s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 269 (463)
++.+|++..- ++..|... +++.+++|.++|++||+++|+||++..+... +... .. ..+|+ ..+ | .
T Consensus 594 ~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRt-G~~f-a~----e~~gv--~PD---i--i 660 (831)
T 4a0g_A 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRL-GVET-TT----ELLGC--KPD---I--A 660 (831)
T ss_dssp EEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTT-SBSS-TH----HHHSS--CCS---E--E
T ss_pred cEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccC-CCch-hh----HhcCC--CCc---E--E
Confidence 5666666543 67777654 7888999999999999999999999876442 2221 11 12222 222 2 3
Q ss_pred cCCcccCCCCC-ceeEEEEecCCChhHHHHHHhh-------hhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 041151 270 TVSKGYWGECG-QRGGYFEMTNIPPKTVDEIYKI-------ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGI 341 (463)
Q Consensus 270 S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (463)
++||.+ + .| +++|+++ +++++++.+... ...+++.+++.+.++.+.|+ .+++ +.+
T Consensus 661 tlsK~L-~-gG~~Plgav~---~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~-----------~i~~-~~l 723 (831)
T 4a0g_A 661 CFAKLL-T-GGMVPLAVTL---ATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQ-----------WFKD-PET 723 (831)
T ss_dssp EECGGG-G-TTSSCCEEEE---ECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHH-----------HHHC-TTT
T ss_pred EEeccc-c-cCccCcEEEE---ECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHH-----------HHHh-hHH
Confidence 799999 5 47 8999999 488888887542 22467778888888877763 1111 011
Q ss_pred HHHHHHH--------HHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCC-ChHHHHHHHHHhcCeEeeC
Q 041151 342 LESLRRR--------ARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKV-PDVFYCLRLLEATGISTVP 412 (463)
Q Consensus 342 ~~~~~~~--------~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~~~gI~v~p 412 (463)
.++.+++ .+.+.+.+.+.|.+..+...|.++.+ .+.-+.. ..+.. .....+...|.++||+++|
T Consensus 724 ~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~i-el~~~~~------~~~~~~~~a~~~~~~l~e~Gv~v~p 796 (831)
T 4a0g_A 724 NHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFAL-ELKADAS------NSGYASLYAKSLLIMLREDGIFTRP 796 (831)
T ss_dssp CTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEE-EEC---------------CHHHHHHHHHHHHTTEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEE-EEecCcc------ccccchHHHHHHHHHHHHCCcEEEe
Confidence 1111111 11344455556665555555544443 3321100 00000 1122344556788999987
Q ss_pred CCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 413 GSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 413 g~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
+. +.+|++.. .++++|++++++|.++++++
T Consensus 797 ~g--------~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 797 LG--------NVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp BT--------TEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred cC--------CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 42 37999965 89999999999999887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 463 | ||||
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 2e-35 | |
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 6e-33 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 4e-31 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-25 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 8e-21 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 2e-20 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 7e-19 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 1e-18 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 2e-18 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 6e-18 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 7e-18 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 9e-18 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 1e-16 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 4e-16 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 9e-16 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-15 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 5e-15 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 1e-13 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 3e-12 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 6e-12 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 2e-11 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 1e-10 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 6e-10 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 1e-09 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 7e-08 |
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 133 bits (335), Expect = 2e-35
Identities = 103/450 (22%), Positives = 178/450 (39%), Gaps = 78/450 (17%)
Query: 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFL 71
++ V+YA+R ++ L A EL+K+G K+I N+G+P +P P +
Sbjct: 5 SKRALSVEYAIR-DVVLPARELEKKGIKVIRLNIGDPVKFDFQP---PEHMK-------- 52
Query: 72 LDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE 131
+A +A G Y DS G+P +RK + E +R++G P+
Sbjct: 53 ------------EAYCKA------IKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPD 94
Query: 132 LIFLTDGASKGVMQTLNCVIRGEGDGVVL-----LFHTTWKRQQIGVLIINDLQQSV--- 183
+ +T ++ + + GD +++ +T + G + +
Sbjct: 95 DVRVTAAVTEALQLI-FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQ 153
Query: 184 ----AQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+ +A+ +INP NPTG + L EIL + + ++ DE+Y Y
Sbjct: 154 PDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY 213
Query: 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD-- 297
+ E S +K+V ++ + +SK Y G R GY + K +
Sbjct: 214 EGEHISPGS----------LTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPENKLSEVR 262
Query: 298 -EIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356
I ++A I L PN PAQ + +++E ++ L+ R +
Sbjct: 263 EAIDRLARIRLCPNTPAQFAAIAGLTG-------PMDYLKE---YMKKLKERRDYIYKRL 312
Query: 357 NSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF 416
N + +GA Y FP+I + P D + L +L + V GSGF
Sbjct: 313 NEIPGISTTKPQGAFYIFPKIEVGPWK----------NDKEFVLDVLHNAHVLFVHGSGF 362
Query: 417 GQKEGIFHLRTTILPAEEDMPAIMESFKKF 446
G+ G H R LP E + M+ F+KF
Sbjct: 363 GE-YGAGHFRAVFLPPIEILEEAMDRFEKF 391
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 126 bits (317), Expect = 6e-33
Identities = 85/446 (19%), Positives = 156/446 (34%), Gaps = 79/446 (17%)
Query: 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLL 72
V+ V ++ + +A ++ EG + + G P P+ +V
Sbjct: 5 ARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEP------DFNTPKHIVE-------- 50
Query: 73 DDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL 132
A A + G Y + G P +R+ +A+ ++R +G +
Sbjct: 51 -----------AAKAALEQ-------GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADN 92
Query: 133 IFLTDGASKGVMQTLNCVIRGEGDGVVL----------LFHTTWKRQQIGVLIINDLQQS 182
I +T+G + + + +I GD V++ + I + +
Sbjct: 93 ILVTNGGKQSIFNLMLAMIE-PGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKV 151
Query: 183 VAQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ + IT + +V P NPTG + +R I + + L +L DE+Y++
Sbjct: 152 SPEQIRQAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKI-LY 210
Query: 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300
D+ +S P + E + V +K Y G R G+ P + +
Sbjct: 211 DDAQHLSIGAA-----SPEAYE-RSVVCSGFAKTY-AMTGWRVGFL----AGPVPLVKAA 259
Query: 301 KIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR 360
+ NV G + D E L + R R M D N+
Sbjct: 260 TKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEM--------LAAFAERRRYMLDALNAMP 311
Query: 361 NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420
+ C +GA Y FP I + + +C LL+ ++TVPG+ FG +
Sbjct: 312 GLECPKPDGAFYMFPSIAKTGR-----------SSLDFCSELLDQHQVATVPGAAFGADD 360
Query: 421 GIFHLRTTILPAEEDMPAIMESFKKF 446
+R + + + ME +KF
Sbjct: 361 ---CIRLSYATDLDTIKRGMERLEKF 383
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 121 bits (304), Expect = 4e-31
Identities = 83/446 (18%), Positives = 162/446 (36%), Gaps = 82/446 (18%)
Query: 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLL 72
V+ ++ + + +A EL+++G ++ G P P V
Sbjct: 6 RRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEP------DFDTPEHVK--------- 50
Query: 73 DDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL 132
+A RA L G Y+ GIP +R+ +AE R +G PE
Sbjct: 51 -----------EAARRA-----LAQGKTK-YAPPAGIPELREALAEKFRRENGLSVTPEE 93
Query: 133 IFLTDGASKGVMQTLNCVIRGEGDGVVL-----LFHTTWKRQQIGVLIINDLQQSV---- 183
+T G S+ + ++ GD V++ + + R GV++ +
Sbjct: 94 TIVTVGGSQALFNLFQAIL-DPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVP 152
Query: 184 -AQARSKGIT--VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ + IT +A+V+ +P NPTG + L + R + + L+ DE+Y+ +Y+
Sbjct: 153 DPERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYE 212
Query: 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300
E S +V + ++ + +K + G R GY P + + +
Sbjct: 213 GE--HFSPGRVAPE---------HTLTVNGAAKAF-AMTGWRIGYAC---GPKEVIKAMA 257
Query: 301 KIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR 360
++ + + + L + ++ + R E+ RRR ++ +G +
Sbjct: 258 SVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAR------EAYRRRRDLLLEGLTAL- 310
Query: 361 NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420
+ GA Y PD L G++ VPG+ F
Sbjct: 311 GLKAVRPSGAFYVLMDTS------------PIAPDEVRAAERLLEAGVAVVPGTDFAAFG 358
Query: 421 GIFHLRTTILPAEEDMPAIMESFKKF 446
H+R + +EE++ +E F +
Sbjct: 359 ---HVRLSYATSEENLRKALERFARV 381
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 105 bits (262), Expect = 2e-25
Identities = 72/384 (18%), Positives = 143/384 (37%), Gaps = 61/384 (15%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK 141
P AK L GL Y + G+ +R+ +AE +++++G +DP+ + +
Sbjct: 40 PQHIKEYAKEALD---KGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGAN 96
Query: 142 GVMQTLNCVIRGEGDGVVL------------------LFHTTWKRQQIGVLIINDLQQSV 183
+G+ V++ + L +++L++ V
Sbjct: 97 QAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV 156
Query: 184 AQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDER 243
RA++I +P NPTG L++ +L EI F + +L+++ DEVY+ IY D R
Sbjct: 157 TDK------TRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR 210
Query: 244 -PFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302
++S + + ++ + SK + G R G+ + + + +
Sbjct: 211 HYSIASLDGMFER---------TITVNGFSKTF-AMTGWRLGFVAAPSWIIERMVKFQMY 260
Query: 303 ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362
+ + L D + V + R R + + +
Sbjct: 261 NATCPVTFIQYAAAKAL-------KDERSWKAVE----EMRKEYDRRRKLVWKRLNEMGL 309
Query: 363 VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422
+GA Y FP+I R + + +L+ ++ VPGS FG K G
Sbjct: 310 PTVKPKGAFYIFPRI-----------RDTGLTSKKFSELMLKEARVAVVPGSAFG-KAGE 357
Query: 423 FHLRTTILPAEEDMPAIMESFKKF 446
++R + A E + M+ ++
Sbjct: 358 GYVRISYATAYEKLEEAMDRMERV 381
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.1 bits (227), Expect = 8e-21
Identities = 63/395 (15%), Positives = 122/395 (30%), Gaps = 43/395 (10%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK 141
P A+ +H +S Y+ + G P + K +A F G DP L
Sbjct: 40 PDFAVEAFQHAVSGDFMLNQ-YTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGY 98
Query: 142 GVMQTLNCVIRGEGDGVVLLFHTTW---------------------KRQQIGVLIINDLQ 180
G + T + EGD V+++ Q + ++ Q
Sbjct: 99 GALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQ 158
Query: 181 QSVAQARSKGITVRAMVIINPGNP-TGQCLSEANLREILRFCYQENLVLLGDEVYQQNIY 239
+ K + +++N N G+ S L + C Q ++V + DEVYQ +Y
Sbjct: 159 LDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVY 218
Query: 240 QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299
D +S + + + G + G+ + K + +
Sbjct: 219 -DGHQHIS--------IASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTV 269
Query: 300 YKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC 359
++ + A + L S +R R
Sbjct: 270 HQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQA------MQRCRDHMIRSLQS 323
Query: 360 RNVVCNFTEGAMYSFPQIR-LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG- 417
+ +G+ + I K + + D + +++ G+ +P S F
Sbjct: 324 VGLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYS 383
Query: 418 ---QKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449
QK ++R + E + A+ E +K+ E
Sbjct: 384 VPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE 418
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 91.0 bits (224), Expect = 2e-20
Identities = 41/388 (10%), Positives = 109/388 (28%), Gaps = 37/388 (9%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGAS 140
P A+ + Y+ G P + + +++ + +P + +T GA
Sbjct: 41 PKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAY 100
Query: 141 KGVMQTLNCVIRGEGD------------------GVVLLFHTTWKRQQIGVLIINDLQQS 182
+ + T+ + + G + F + G + D
Sbjct: 101 EALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLD 160
Query: 183 VAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDE 242
+ + M+IIN + + + E++ ++ VL + +++ +
Sbjct: 161 NNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP 220
Query: 243 RPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI 302
+ + + G + G+ K + +++
Sbjct: 221 FE--------HIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQN 272
Query: 303 ASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362
+ P Q + + S E + G R F + +
Sbjct: 273 CVY--TCATPIQEAIAVGFETELKRLKSPECYFNSISGE----LMAKRDYMASFLAEVGM 326
Query: 363 VCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422
+G + ++ + D + + ++ G+ +P S F +
Sbjct: 327 NPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNK 386
Query: 423 F----HLRTTILPAEEDMPAIMESFKKF 446
+R +E++ E +K+
Sbjct: 387 HLGEDFVRYCFFKKDENLQKAAEILRKW 414
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 86.3 bits (213), Expect = 7e-19
Identities = 45/356 (12%), Positives = 100/356 (28%), Gaps = 56/356 (15%)
Query: 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGAS---KGVMQTL---NCVIRGEGDGVVLLFH 163
+ K + E E + I G + G++ +L + V+
Sbjct: 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHA 162
Query: 164 TTWKRQQIGVLIIN--------DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215
+ + + + V + + ++ +P NP G
Sbjct: 163 PFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPE---QYIEMVTSPNNPEGLL------- 212
Query: 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275
+ ++ +Y Y + K + + T+SK +
Sbjct: 213 -------RHAVIKGCKSIYDMVYYWPHYTPIKYKAD------------EDILLFTMSK-F 252
Query: 276 WGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335
G G R G+ I ++V + + + + LK +
Sbjct: 253 TGHSGSRFGW---ALIKDESVYNNLLNY-MTKNTEGTPRETQLRSLKVLKEVVAMVKTQK 308
Query: 336 RESKGILES----LRRRARMMTDGFNSCRNVVC-NFTEGAMYSFPQIRLPPKAIEAAKRA 390
+ + LR R +T + + ++ + PP A +
Sbjct: 309 GTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKC 368
Query: 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446
D C + + I+T G GF ++R +++ ++D +M K
Sbjct: 369 EWEEDKD-CYQTFQNGRINTQNGVGFEASSR--YVRLSLIKTQDDFDQLMYYLKDM 421
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 85.5 bits (210), Expect = 1e-18
Identities = 51/375 (13%), Positives = 110/375 (29%), Gaps = 43/375 (11%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDGY--PSDPELIFLTDGASKGVMQTLNCVIRGEGD 156
L + D G+P +K + +F+ G DP + LT GA+ + C+ G+
Sbjct: 76 ELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGE 134
Query: 157 GVVL-----LFHTTWKRQQIGVLIIN-------------DLQQSVAQARSKGITVRAMVI 198
V++ + + GV I+ + Q K V+
Sbjct: 135 AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVL 194
Query: 199 INPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLP 258
+ + N +L ++ + L + F+S +VL D
Sbjct: 195 VTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCD 254
Query: 259 FSKEV--QLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIF 316
+ EV ++ +++SK G G R G + +
Sbjct: 255 ENSEVWQRVHVVYSLSK-DLGLPGFRVGAIYSNDDMVVAAATKMS-----------SFGL 302
Query: 317 MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQ 376
+ L +S ++ + ++ + + C ++ +
Sbjct: 303 VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVD 362
Query: 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-LPAEED 435
+R + ++ +++ ++ PGS R E
Sbjct: 363 MR------HLLRSNTFEAEMELWKKIVYEVHLNISPGSSCH-CTEPGWFRVCFANLPERT 415
Query: 436 MPAIMESFKKFNDEF 450
+ M+ K F E+
Sbjct: 416 LDLAMQRLKAFVGEY 430
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 84.3 bits (207), Expect = 2e-18
Identities = 81/448 (18%), Positives = 151/448 (33%), Gaps = 88/448 (19%)
Query: 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPF 70
++ + ++ + EL +A L K+G+ +I G P P VV
Sbjct: 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEP------DFPTPEPVVE------ 48
Query: 71 LLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP 130
+A+ + G Y+D RGI +R+ +A+ I R P
Sbjct: 49 -------------EAVRFLQK-------GEVKYTDPRGIYELREGIAKRIGERYKKDISP 88
Query: 131 ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------FHTTWKRQQIGVLIIND 178
+ + +T+GA + + ++ GD V++ + N
Sbjct: 89 DQVVVTNGAKQALFNAFMALL-DPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNF 147
Query: 179 LQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238
+A++I +P NPTG L ++R + N ++ DEVY +
Sbjct: 148 QPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLV 207
Query: 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDE 298
Y DE + D ++V + SK + G R GY + V +
Sbjct: 208 YTDEFTSILDVSEGFD---------RIVYINGFSKSH-SMTGWRVGYLISSEKVATAVSK 257
Query: 299 IYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS 358
I + + ++ ++++ + R + +
Sbjct: 258 IQ---------------SHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKK 302
Query: 359 CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ 418
V EGA Y F ++R DV +C RLLE ++ VPGS F +
Sbjct: 303 M-GVKFVEPEGAFYLFFKVR--------------GDDVKFCERLLEEKKVALVPGSAFLK 347
Query: 419 KEGIFHLRTTILPAEEDMPAIMESFKKF 446
+R + + E + ++ + F
Sbjct: 348 PG---FVRLSFATSIERLTEALDRIEDF 372
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 83.1 bits (204), Expect = 6e-18
Identities = 46/363 (12%), Positives = 90/363 (24%), Gaps = 42/363 (11%)
Query: 74 DPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI 133
+ + GI+ A+A A+ L+ G Y G+ R +A + D + +
Sbjct: 38 NED-GIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRV 96
Query: 134 FLTDGASKGVMQT---LNCVIRGEGDGVVLLFHTTWKRQQIGVL---------------I 175
GV + T I
Sbjct: 97 ATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATN 156
Query: 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235
+A ++ ++ NPTG L+ ++ L+ D YQ
Sbjct: 157 GVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ 216
Query: 236 QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295
E + + + GLP + SF + G+R G + +
Sbjct: 217 GFGAGMEEDA-YAIRAIASAGLPA---LVSNSFSK----IFSLYGERVGGLSVMCEDAEA 268
Query: 296 VDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDIS-YEQFVRESKGILESLRRRARMMTD 354
+ + N + G V D + ++ E + + + + +
Sbjct: 269 AGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVK 328
Query: 355 GFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS 414
+ E R + RL E G+ +
Sbjct: 329 VLS------TEMPERNFDYLLNQR-------GMFSYTGLSAAQ-VDRLREEFGVYLIASG 374
Query: 415 GFG 417
Sbjct: 375 RMC 377
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 83.1 bits (204), Expect = 7e-18
Identities = 56/370 (15%), Positives = 123/370 (33%), Gaps = 43/370 (11%)
Query: 99 GLGAYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGD 156
+ + D G+P RK +A+F+E+ G DPE + + G + G +T+ + GD
Sbjct: 75 AIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGG-ATGANETIIFCLADPGD 133
Query: 157 GVVL-------------------LFHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMV 197
++ L + + ++++ A+ I V+ ++
Sbjct: 134 AFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLI 193
Query: 198 IINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGL 257
+ NP NP G L + L+ +L F Q N+ L+ DE D FVS ++L + +
Sbjct: 194 LTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDE-IYAATVFDTPQFVSIAEILDEQEM 252
Query: 258 PFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFM 317
+ + + +++SK G G R G N + + M
Sbjct: 253 TYCNKDLVHIVYSLSK-DMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAM 311
Query: 318 GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQI 377
+ + + + + C ++ + +
Sbjct: 312 LSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-----------GIKCLKNNAGLFCWMDL 360
Query: 378 RLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEED-M 436
R + + ++ ++ ++ PGS F + R ++ +
Sbjct: 361 R------PLLRESTFDSEMSLWRVIINDVKLNVSPGSSFE-CQEPGWFRVCFANMDDGTV 413
Query: 437 PAIMESFKKF 446
+ ++F
Sbjct: 414 DIALARIRRF 423
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 82.7 bits (203), Expect = 9e-18
Identities = 42/373 (11%), Positives = 94/373 (25%), Gaps = 55/373 (14%)
Query: 74 DPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI 133
+ + + + + ++ S Y G+ R + D + +
Sbjct: 42 TDD-CQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRV 100
Query: 134 FLTD-----GASKGVMQTLNCVIRGEGDG--VVLLFHTTWKRQQIGVLI----------- 175
GA + + L G + V + TW+
Sbjct: 101 GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRY 160
Query: 176 ------INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229
DLQ ++ + ++ NPTG + ++I + L
Sbjct: 161 WDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPF 220
Query: 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMT 289
D YQ + + + + G + +G +R G +
Sbjct: 221 FDSAYQGFASGNLEKDAWAIRYFVSEGFE-------LFCAQSFSKNFGLYNERVGNLTVV 273
Query: 290 NIPPKTVDEIY-KIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRR 348
P ++ + ++ I +V + ++ K + + +
Sbjct: 274 AKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSM 333
Query: 349 ARMMTDGFNSCRNVVCNFT----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLE 404
+ + + M+SF L PK +E L+
Sbjct: 334 RSELRARLE-ALKTPGTWNHITDQIGMFSFT--GLNPKQVE---------------YLIN 375
Query: 405 ATGISTVPGSGFG 417
I +P
Sbjct: 376 QKHIYLLPSGRIN 388
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 79.1 bits (193), Expect = 1e-16
Identities = 70/446 (15%), Positives = 132/446 (29%), Gaps = 74/446 (16%)
Query: 28 LRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87
++ K II +VG+P + ++ A I
Sbjct: 20 SDNAKPSPSPKPIIKLSVGDP-------------------------TLDKNLLTSAAQIK 54
Query: 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSD------PELIFLTDGASK 141
+ K ++ S Y + G P R+ VA + + + + + L G S
Sbjct: 55 KLKE--AIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSH 112
Query: 142 GVMQTLNCVIRGEGDGVVLLFHTTWKRQ-----------QIGVLIINDLQQSVAQARSKG 190
G++ + + +V + R K
Sbjct: 113 GILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD 172
Query: 191 ITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250
+ +++ NP NP G S ++ +I+R + L L DE+Y +++ + P +
Sbjct: 173 DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNAT--- 229
Query: 251 VLMDMGLPFSKEVQLVSFHTVSKGY--WGECGQRGGYFEMTNIPPKTVDEIYKIASIALS 308
F V V +K G Y + P ++ + ++ +
Sbjct: 230 --FTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCG 287
Query: 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTE 368
P Q +G + + A + + C +
Sbjct: 288 PCTVVQAALGEALLNTPQEHLDQIVAKI---------EESAMYLYNHIGECIGLAPTMPR 338
Query: 369 GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428
GAMY +I L K DV + +LLE + +PG+ F R T
Sbjct: 339 GAMYLMSRIDLE-------KYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPG---FTRLT 388
Query: 429 ILPAEEDMPAIMESFKKFNDEFMEQY 454
E +E K F +++
Sbjct: 389 TTRPVEVYREAVERIK----AFCQRH 410
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 77.3 bits (189), Expect = 4e-16
Identities = 45/363 (12%), Positives = 95/363 (26%), Gaps = 49/363 (13%)
Query: 74 DPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI 133
D G ++ +A+ YL L + Y GIP + E + + + +
Sbjct: 38 DET-GKTPVLTSVKKAEQYL-LENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRA 95
Query: 134 FLTDGASKGVMQTLNCVI--RGEGDGVVLLFHTTWKRQQIGVLI---------------- 175
+ + V + + +W +
Sbjct: 96 RTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENH 155
Query: 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235
D + + NPTG + + + + ++ + L D YQ
Sbjct: 156 TLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ 215
Query: 236 QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295
+ M + + +G +R G + +T
Sbjct: 216 GFAR-GLEEDAEGLRAFAAMHKE-------LIVASSYSKNFGLYNERVGACTLVAADSET 267
Query: 296 VDEIYKIASIALSPNVPAQIFMGLMVNPLKPGD-ISYEQFVRESKGILESLRRRARMMTD 354
VD + A+ N G V + + +E + + ++R ++ +
Sbjct: 268 VDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVN 327
Query: 355 GFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV 411
R+ + M+SF L + + RL E G+ V
Sbjct: 328 TLQEKGANRDFSFIIKQNGMFSF--SGLTKEQVL---------------RLREEFGVYAV 370
Query: 412 PGS 414
Sbjct: 371 ASG 373
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 76.6 bits (187), Expect = 9e-16
Identities = 56/420 (13%), Positives = 123/420 (29%), Gaps = 63/420 (15%)
Query: 60 RQVVALCQAPFLLD------DPNVGIVFPADAIARA-KHYLSLTSGGLGAYSDSRGIPGV 112
R+++ L + ++ P FP + I + L + Y ++G +
Sbjct: 20 RELLKLVETSDVISLAGGLPAPET---FPVETIKKIAVEVLEEHADKALQYGTTKGFTPL 76
Query: 113 RKEVAEFIERRDGYPSDPELIF---------------LTDGASKGVMQTLNCVIRGEGDG 157
R +A ++E+R P I + V++ + +
Sbjct: 77 RLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFK 136
Query: 158 VVLLFHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREI 217
+ G+ + ++ + + NP G +S +++
Sbjct: 137 YYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKL 196
Query: 218 LRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWG 277
L + + +++ D Y + Y E F +++ T SK
Sbjct: 197 LELANEYDFLIVEDGPYSELRYSGEP---------TPPIKHFDDYGRVIYLGTFSKILA- 246
Query: 278 ECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE 337
G R G+ + + IA G + + ++ + +
Sbjct: 247 -PGFRIGWVAAHP-------HLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGYLDEHIPK 298
Query: 338 SKGILESLRRRARMMTDGFNSC--RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395
E + R M + V EG M+ + P+ I+
Sbjct: 299 II---EFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTL---PEGIDTKL------- 345
Query: 396 VFYCLRLLEATGISTVPGSGFG-QKEGIFHLRTTI-LPAEEDMPAIMESFKKFNDEFMEQ 453
+ A G++ VPG F ++ +R EE + + + E M++
Sbjct: 346 ---MMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR 402
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 75.0 bits (183), Expect = 3e-15
Identities = 54/361 (14%), Positives = 95/361 (26%), Gaps = 48/361 (13%)
Query: 74 DPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI 133
D G A+ A+ + L + Y+ G P +K + E I DG S+
Sbjct: 38 DAT-GHTPIMRAVHAAEQRM-LETETTKTYAGLSGEPEFQKAMGELI-LGDGLKSETTAT 94
Query: 134 FLTDGASKGVMQTLNCVIRGEGDGVVLLFHTTWKRQQIGVLIIN---------------- 177
T G + + Q L D V + TW + +
Sbjct: 95 LATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGV 154
Query: 178 DLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237
D + A + ++ NPTG L+ EI + + L D YQ
Sbjct: 155 DFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGF 214
Query: 238 IYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297
E ++ + + V +G +R G T +
Sbjct: 215 GDGLEEDAAGTR--------LIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRE 266
Query: 298 EIYKIASIALSPNVPAQIFMGLMVNPLKPGDISY-EQFVRESKGILESLRRRARMMTDGF 356
+ F G + ++ E + + + R +
Sbjct: 267 LAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGEL 326
Query: 357 N---SCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPG 413
M+S + P+ ++ R+ E GI V
Sbjct: 327 RDLSGSDRFGFVAEHRGMFSR--LGATPEQVK---------------RIKEEFGIYMVGD 369
Query: 414 S 414
S
Sbjct: 370 S 370
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 74.3 bits (181), Expect = 5e-15
Identities = 51/370 (13%), Positives = 94/370 (25%), Gaps = 48/370 (12%)
Query: 74 DPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI 133
D N G + ++ A+ + S Y G+P + A+ I + +
Sbjct: 41 DDN-GKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRV 99
Query: 134 FLTDGASKGVMQTL---NCVIRGEGDGVVLL---------------FHTTWKRQQIGVLI 175
S + V L T
Sbjct: 100 ISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETK 159
Query: 176 INDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235
DL + + ++ NPTG + +I+ +N + L D YQ
Sbjct: 160 SLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ 219
Query: 236 QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN----- 290
D + V + + + V G+R G F +
Sbjct: 220 GFATGDLDK--DAYAVRLGVEKLSTVSPVFVCQSFAKNAGM--YGERVGCFHLALTKQAQ 275
Query: 291 IPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRAR 350
++A I S + +V L EQ+ ++ + + +
Sbjct: 276 NKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRH 335
Query: 351 MMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG 407
+ D N + M+SF L P+ ++ RL E
Sbjct: 336 ALRDHLVKLGTPGNWDHIVNQCGMFSF--TGLTPQMVK---------------RLEETHA 378
Query: 408 ISTVPGSGFG 417
+ V
Sbjct: 379 VYLVASGRAS 388
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 70.4 bits (171), Expect = 1e-13
Identities = 43/365 (11%), Positives = 95/365 (26%), Gaps = 51/365 (13%)
Query: 74 DPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI 133
D N G + + + +A+ + Y G+ + AE +
Sbjct: 40 DDN-GKPYVLNCVRKAEAMI-AAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRY 97
Query: 134 FLTDGASKGVMQTL---NCVIRGEGDGVVLLFHTTW-----KRQQIGVLII--------- 176
G S + + V L +W + G+ +
Sbjct: 98 VTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKT 157
Query: 177 --NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVY 234
D ++ ++ NPTG + +E+ + NL+ D Y
Sbjct: 158 CSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAY 217
Query: 235 QQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294
Q D + + ++ G+ G G+R G F + +
Sbjct: 218 QGFASGDINRDAWALRHFIEQGIDVV-------LSQSYAKNMGLYGERAGAFTVICRDAE 270
Query: 295 TVD-EIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353
++ + + + + + ++++ E KG+ + + +
Sbjct: 271 EAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLV 330
Query: 354 DGFNSCRNVVCNFT----EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGIS 409
N+ + M+ F L P+ RL + I
Sbjct: 331 SNLK-KEGSSHNWQHITDQIGMFCF--TGLKPE---------------QVERLTKEFSIY 372
Query: 410 TVPGS 414
Sbjct: 373 MTKDG 377
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 65.6 bits (158), Expect = 3e-12
Identities = 71/452 (15%), Positives = 130/452 (28%), Gaps = 79/452 (17%)
Query: 12 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFL 71
++ V + + +L A +K G +I N+G P L P
Sbjct: 2 SDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQP------DLKTPEVFF-------- 47
Query: 72 LDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE 131
+ I K + YS S GI +R+ A + +RR PE
Sbjct: 48 ------------ERIYENKP-------EVVYYSHSAGIWELREAFASYYKRRQRVDVKPE 88
Query: 132 LIFLTDGASKGVMQTLNCVIRGEGDGVV----LLFHTTWKRQQIGVLIINDLQQSVAQAR 187
+ L + VI GD ++ + + GV +I ++
Sbjct: 89 NV-LVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFA 147
Query: 188 SKGIT-------VRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240
+ +V+ NP NPTG + +R ++ + L L+ DEVY + +++
Sbjct: 148 IPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFR 207
Query: 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300
+ S E V + CG R G N +
Sbjct: 208 ------------GEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMKL 255
Query: 301 KIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR 360
AQ + + + E+ R R +
Sbjct: 256 ------------AQGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEHG 303
Query: 361 NVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE 420
GA Y ++ + A E A+ ++ P GF
Sbjct: 304 LKRFTKPSGAFYITAELPVE-DAEEFARWM-------LTDFNMDGETTMVAPLRGFYLTP 355
Query: 421 GIF--HLRTTILPAEEDMPAIMESFKKFNDEF 450
G+ +R + ++ + ++ + F
Sbjct: 356 GLGKKEIRIACVLEKDLLSRAIDVLMEGLKMF 387
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 64.8 bits (156), Expect = 6e-12
Identities = 45/367 (12%), Positives = 104/367 (28%), Gaps = 29/367 (7%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASK 141
P R H+++ G Y+ G+ +R+ +A+ ER GY D + +
Sbjct: 41 PRYLQERLAHHVA---QGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGAT 97
Query: 142 GVMQTLNCVIRGEGDGVVLLFHTTWKRQQIGVLIINDLQQSVAQARSKGITVRAMVIINP 201
+ + GD V+ + L +++ Q + + +
Sbjct: 98 EALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS 157
Query: 202 GNPTGQCLSEANLRE--ILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259
L+ + + + L I + ++ + L
Sbjct: 158 ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAH 217
Query: 260 SKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGL 319
+ + + + G + GY + ++++ + +++ + L
Sbjct: 218 PQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADML 277
Query: 320 MVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRL 379
P E L R+ R + + + EG +
Sbjct: 278 RAEP-------------EHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYS- 323
Query: 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG-QKEGIFHLRTTILPAEEDMPA 438
+ DV +C L + G++ +P S F +R E + A
Sbjct: 324 ---------AVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLA 374
Query: 439 IMESFKK 445
E ++
Sbjct: 375 AAERLRQ 381
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 62.9 bits (151), Expect = 2e-11
Identities = 29/365 (7%), Positives = 81/365 (22%), Gaps = 29/365 (7%)
Query: 84 DAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGV 143
+A+ + L G G YS + +A + + D + + V
Sbjct: 19 EALNQR-----LMHGVFG-YSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMV 71
Query: 144 MQTLNCVIRGEGDGVVLLFHTTWKRQQIGVLIINDLQQSVAQARSKGI--TVRAMVIINP 201
+ + V+ + I + ++ + + ++
Sbjct: 72 SELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK 131
Query: 202 GNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSK 261
L + E ++ + + +
Sbjct: 132 PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV 191
Query: 262 EVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMV 321
+ T + G Y + N + LS + +
Sbjct: 192 ARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAA 251
Query: 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP 381
+ + + + + + + ++ +R
Sbjct: 252 YQQGAPWLDALRIYLK--------DNLTYIADKMNAAFPELNWQIPQSTYLAWLDLR--- 300
Query: 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIME 441
+ D L+E ++ +PG +G +EG +R + +
Sbjct: 301 --------PLNIDDNALQKALIEQEKVAIMPGYTYG-EEGRGFVRLNAGCPRSKLEKGVA 351
Query: 442 SFKKF 446
Sbjct: 352 GLINA 356
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 49/394 (12%), Positives = 112/394 (28%), Gaps = 51/394 (12%)
Query: 81 FPADAIARA-KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGA 139
FP +A K + YS + G P +++++ + +ER G E +
Sbjct: 53 FPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVG 112
Query: 140 SKGVMQTLNCVIRGEGDGVVLLFHTTWKRQQIGVL------------------IINDLQQ 181
S+ + + + + VL ++
Sbjct: 113 SQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDDGMDLNVLERKLS 172
Query: 182 SVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQD 241
+ V+ N NP G S + ++ + +L ++ D+ Y Y+
Sbjct: 173 EFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEG 232
Query: 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301
E K + + G R G + + + + +
Sbjct: 233 ETVDPIFKIGGPER-----------VVLLNTFSKVLAPGLRIGMVAGSKEFIRKIVQAKQ 281
Query: 302 IASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN 361
A + L L + R + + + F+
Sbjct: 282 SADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKR------TVMLNALEEYFSDIPG 335
Query: 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFG-QKE 420
V +EG ++ + + P+ + + + + VPG F E
Sbjct: 336 VKWVKSEGGLFIWLTL---PEGFDTWE----------MFEYAKRKKVFYVPGRVFKVYDE 382
Query: 421 GIFHLRTTI-LPAEEDMPAIMESFKKFNDEFMEQ 453
+R + LP +E + ++ ++ E+ ++
Sbjct: 383 PSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKE 416
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 58.6 bits (140), Expect = 6e-10
Identities = 54/374 (14%), Positives = 106/374 (28%), Gaps = 55/374 (14%)
Query: 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAE--------FIERRDGYPSDPELI 133
P + + L G Y+ G+P +R+ +AE + + L+
Sbjct: 40 PPFLLEAVRRAL----GRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLL 95
Query: 134 FLTDGASKGVMQTLNCVIRGEGDGVVLLFHTTWKRQQIGVLIINDLQQSVAQARSKGITV 193
G V+ D + R + ++ +A +
Sbjct: 96 QSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTP--RT 153
Query: 194 RAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253
RA+++ P NPTG E L I R +L L+ DEVY + Y + +
Sbjct: 154 RALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPER 213
Query: 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPA 313
+ G R G+ + + +
Sbjct: 214 TF------------TVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQ----------WT 251
Query: 314 QIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYS 373
+ + + + + E RRR ++ G + + EG +
Sbjct: 252 SFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFL 310
Query: 374 FPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE-GIFHLRTTILPA 432
++P RL+E ++ +P S F ++ R
Sbjct: 311 MA----------------ELPGWD-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKT 353
Query: 433 EEDMPAIMESFKKF 446
EE++ +E +
Sbjct: 354 EEELHLALERLGRV 367
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 57.1 bits (136), Expect = 1e-09
Identities = 48/431 (11%), Positives = 103/431 (23%), Gaps = 76/431 (17%)
Query: 29 RASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88
S+ + G +++ +V + F P L++
Sbjct: 22 MYSQNPEVGNEVVPLSVADM--------EFK-------NPPELIEG----------LKKY 56
Query: 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVM---- 144
+ +K V ++++ R + + I T G V
Sbjct: 57 LDE---------TVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVR 107
Query: 145 ---------QTLNCVIRGEGDGVVLLFHTTWKRQQIGVLIINDLQQSVAQARSKGITVRA 195
+ V + + + + + + SK +A
Sbjct: 108 EFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKA 167
Query: 196 MVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDM 255
++ +P NP G+ + L++I + +L+L DE++ I V
Sbjct: 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA 227
Query: 256 GLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQI 315
T + G + P + K
Sbjct: 228 ----------DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLG 277
Query: 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFP 375
+ + + G + + + + + EG +
Sbjct: 278 YKACEICYKECGKWLDGCIKVID-------KNQRIVKDFFEVNHPEIKAPLIEGTYLQWI 330
Query: 376 QIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEED 435
R A K+ ++ I G FG GI R +
Sbjct: 331 DFR-----------ALKMDHKAMEEFMIHKAQIFFDEGYIFG-DGGIGFERINLAAPSSV 378
Query: 436 MPAIMESFKKF 446
+ +E K
Sbjct: 379 IQESLERLNKA 389
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 51.8 bits (123), Expect = 7e-08
Identities = 35/360 (9%), Positives = 88/360 (24%), Gaps = 56/360 (15%)
Query: 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL 160
S V + + + + + + S ++ T+ + L
Sbjct: 44 TYIGSSYFAEKVNEYGLKHLGGDEN-----DKCVGFNRTSSAILATILALKPK-KVIHYL 97
Query: 161 LFHTTWKRQQIGVLII-------NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213
+ I+ + + + + + ++ + + + N
Sbjct: 98 PELPGHPSIERSCKIVNAKYFESDKVGEILNKIDKD---TLVIITGSTMDLKV--IELEN 152
Query: 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSK 273
++++ + ++ D+ + + LV T
Sbjct: 153 FKKVINTAKNKEAIVFVDDASGARVRLLF-----------NQPPALKLGADLVVTSTDKL 201
Query: 274 GYWGECGQRGGYFEMTNIPPKTVDEIYKIASI-ALSPNVPAQIFMGLMVNPLKPGDISYE 332
+ + VD+IY + L P + + I
Sbjct: 202 MEGPRG-------GLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKA 254
Query: 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392
E + + N + + P + + + K
Sbjct: 255 F---------ERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIK 305
Query: 393 VPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-------LPAEEDMPAIMESFKK 445
+ LL+ GI T+ +G LR + + + AI+ES K
Sbjct: 306 K-LIEIGFNLLKNYGIITITVAGMPGASK--SLRIDLTSRDAERIDDNYIIKAIVESIKM 362
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 463 | |||
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.94 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.9 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.9 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.89 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.89 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.89 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.89 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.87 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.86 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.85 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.83 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.82 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.82 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.82 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.77 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.76 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.76 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.76 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.75 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.74 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.74 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.71 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.7 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.7 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.69 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.68 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.68 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.68 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.68 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.67 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.67 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.65 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.65 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.65 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.64 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.64 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.64 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.61 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.57 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.57 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.55 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.55 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.54 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.54 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.54 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.53 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.53 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.52 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.52 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.5 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.49 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.41 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.34 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.34 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.33 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.32 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.23 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 98.67 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.55 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=1.8e-58 Score=461.60 Aligned_cols=366 Identities=23% Similarity=0.359 Sum_probs=318.7
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+|+|+..+++|++.++...+++++++|++||||+.|+|++ |. |+.+++++
T Consensus 2 ~~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~------------------------~~-----p~~v~~a~ 52 (388)
T d1j32a_ 2 KLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDF------------------------NT-----PKHIVEAA 52 (388)
T ss_dssp CCCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSS------------------------CC-----CHHHHHHH
T ss_pred chhhHhhcCCcCHHHHHHHHHHHHHHCCCCeEECCCCCCCC------------------------CC-----CHHHHHHH
Confidence 47899999999999999999999999999999999999996 54 89999999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+++.. ..++|+++.|.++||+++++|+.+.+|+.+++++|++|+|+++++..++.+++ +|||.|+++
T Consensus 53 ~~~~~~---~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~ 128 (388)
T d1j32a_ 53 KAALEQ---GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI-EPGDEVIIPAPFWVSYP 128 (388)
T ss_dssp HHHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEESSCCTHHH
T ss_pred HHHHhc---CCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHh-CCCCEEEEcCCCcHHHH
Confidence 988876 55789999999999999999999999999999999999999999999999998 999999997
Q ss_pred -----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ .+++|.+|+ ++|++.+++ ++++++++|||||||.++|.+++++|+++|+++|++||+
T Consensus 129 ~~~~~~~~~~v~~~~~~~~~~~~d~-~~l~~~~~~------~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~ 201 (388)
T d1j32a_ 129 EMVKLAEGTPVILPTTVETQFKVSP-EQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLS 201 (388)
T ss_dssp HHHHHTTCEEEEECCCGGGTTCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHhcCeEEEEecccccccCCCH-HHHHHhCCC------CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEc
Confidence 44444 456788999 999999887 899999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|..+.| ++.++.++....+.. .+++|+++||||+| ++||+|+||++ +++++++.+.+... ...++
T Consensus 202 De~Y~~~~~-~~~~~~s~~~~~~~~------~~~~i~~~S~SK~~-~~~GlRvG~~~---~~~~~~~~~~~~~~~~~~~~ 270 (388)
T d1j32a_ 202 DEIYEKILY-DDAQHLSIGAASPEA------YERSVVCSGFAKTY-AMTGWRVGFLA---GPVPLVKAATKIQGHSTSNV 270 (388)
T ss_dssp ECTTTTCBC-TTCCCCCGGGSCHHH------HHTEEEEEESTTTT-TCTTTCCEEEE---CCHHHHHHHHHHHHTTTCSC
T ss_pred hhhhhcccc-cCCCCCCHHHhCccc------ccceeEecCChhhh-hcchhHeEEEE---ECHHHHHHHHHhhhhccccc
Confidence 999999988 455555655432221 23789999999999 89999999999 69999999888775 56788
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+...|.++...+... .++.++.++.|+++++.+.+.|++++|+.+..|+|+||+|++++ ..
T Consensus 271 ~~~~q~a~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~gg~~l~~~l~--~~------- 331 (388)
T d1j32a_ 271 CTFAQYGAIAAYENS----------QDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIA--KT------- 331 (388)
T ss_dssp CHHHHHHHHHHHHSC----------SHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCG--GG-------
T ss_pred cHHHHHHHhhcccch----------HHHHHHHHHHHHHHHHHHHHHHHhCCCCEecCCCceEEEEEECC--CC-------
Confidence 899999888877532 23455678889999999999999988999999999999996654 21
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
..++.+++.++++++||.+.||+.|+.+ +++||+++.+++++++++++|+++++++
T Consensus 332 --~~~~~~~~~~ll~~~gV~v~pG~~F~~~---~~~Rls~~~~~e~l~~al~rl~~~l~~l 387 (388)
T d1j32a_ 332 --GRSSLDFCSELLDQHQVATVPGAAFGAD---DCIRLSYATDLDTIKRGMERLEKFLHGI 387 (388)
T ss_dssp --TCCHHHHHHHHHHHHCEECEEGGGGTCT---TBEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCCEEEEeccccCCC---CeEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 1246788888999999999999999853 4899999988899999999999999875
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.5e-57 Score=452.47 Aligned_cols=361 Identities=21% Similarity=0.367 Sum_probs=308.4
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR 88 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a 88 (463)
.-+|+|+..+++|+++++..++++++.+|+++|+|+.|+|++ |. |+.++++
T Consensus 2 ~~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~------------------------~~-----p~~i~~a 52 (382)
T d1b5pa_ 2 RGLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDF------------------------DT-----PEHVKEA 52 (382)
T ss_dssp CCCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSS------------------------CC-----CHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCC------------------------CC-----CHHHHHH
Confidence 358999999999999999999999999999999999999996 55 8999999
Q ss_pred HHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 89 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
+.+++.+ ...+|+++.|+++||+++++|+..++|+.+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 53 ~~~~~~~---~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~-~~gd~vl~~~P~y~~~ 128 (382)
T d1b5pa_ 53 ARRALAQ---GKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAIL-DPGDEVIVLSPYWVSY 128 (382)
T ss_dssp HHHHHHT---TCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHH
T ss_pred HHHHHhc---CCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhC-CCCCEEEECCCCcHHH
Confidence 9998876 55789999999999999999999999999999999999999999999999998 999999996
Q ss_pred ------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 ------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 ------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|.++ +.+++.+|+ +.+++.+++ +++++++||||||||.++|.+++++|+++|++||++||
T Consensus 129 ~~~~~~~g~~~~~v~~~~~~~~~~d~-~~l~~~~~~------~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii 201 (382)
T d1b5pa_ 129 PEMVRFAGGVVVEVETLPEEGFVPDP-ERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLV 201 (382)
T ss_dssp HHHHHHTTCEEEEEECCGGGTTCCCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhcCeEEEEecccccccCCCH-HHHHHhCCC------CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEE
Confidence 66655 456789999 999998876 89999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
+||+|+++.|+ +.+..+.. ...+++|+++||||+| ++||+|+||++ +++++++.+.+... ...+
T Consensus 202 ~De~y~~~~~~-~~~~~~~~----------~~~~~~i~~~s~SK~~-~~~GlR~G~~~---~~~~~i~~~~~~~~~~~~~ 266 (382)
T d1b5pa_ 202 SDEIYEHLLYE-GEHFSPGR----------VAPEHTLTVNGAAKAF-AMTGWRIGYAC---GPKEVIKAMASVSRQSTTS 266 (382)
T ss_dssp EECTTTTCBSS-SCCCCGGG----------TCTTTEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHTTTCS
T ss_pred EEccccceecC-CCCCCHHH----------cCCCCEEEEecchhhc-cCcHhheEEEE---ECHHHHHHHHHHHHhcccC
Confidence 99999999883 44433322 1224799999999999 99999999999 69999999988765 5677
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
++.+.|.++..++.. ......+.+..++.|+++++.+.+.+... |+.+..|+|+||+|+++.-.
T Consensus 267 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~gg~~~~~~~~~~-------- 330 (382)
T d1b5pa_ 267 PDTIAQWATLEALTN-------QEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPI-------- 330 (382)
T ss_dssp CCHHHHHHHHHHHHC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSBTTEEEEECTTT--------
T ss_pred ccccccccccccccc-------ccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEecCCceEEEeEeCCCC--------
Confidence 888888887776632 22234445667888999999999999887 89999999999999776411
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
..+...+.++|.++||.+.||+.|+.. +++||+++.++++++++++||++++
T Consensus 331 ----~~~~~~~~~~l~e~gV~v~PG~~F~~~---~~iRis~~~~~e~l~~al~rl~~~L 382 (382)
T d1b5pa_ 331 ----APDEVRAAERLLEAGVAVVPGTDFAAF---GHVRLSYATSEENLRKALERFARVL 382 (382)
T ss_dssp ----CSSHHHHHHHHHHTTEECEESGGGTCT---TEEEEECCSCHHHHHHHHHHGGGGC
T ss_pred ----CCCHHHHHHHHHHCCEEEEeCcccCCC---CeEEEEEcCCHHHHHHHHHHHHHhC
Confidence 124444556677899999999999852 4899999988899999999998763
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-55 Score=441.45 Aligned_cols=363 Identities=23% Similarity=0.365 Sum_probs=308.3
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+|+|+..+++|.|+++...+. ..+++|+|+.|+|++ |. |+.+++++.
T Consensus 2 ~s~~~~~~~~s~ir~~~~~~~----~~~dvi~l~~g~p~~------------------------~~-----p~~v~~~~~ 48 (388)
T d1gdea_ 2 LSDRLELVSASEIRKLFDIAA----GMKDVISLGIGEPDF------------------------DT-----PQHIKEYAK 48 (388)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH----HCTTCEECCCCSCCS------------------------CC-----CHHHHHHHH
T ss_pred hhhhhhhCCccHHHHHHHHHh----CCCCeEECCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 789999999999999987654 356899999999996 54 899999999
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+++.+ ...+|+++.|+++||++||+|+.++++.. .++++|++|+|+++++..++.+++ +|||+|+++
T Consensus 49 ~a~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~-~~gd~vlv~~P~y~~~~ 124 (388)
T d1gdea_ 49 EALDK---GLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFL-KDGEEVLIPTPAFVSYA 124 (388)
T ss_dssp HHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTC-CTTCEEEEEESCCTTHH
T ss_pred HHHhc---CccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhc-CCCCEEEECCCCcHHHH
Confidence 88876 45789999999999999999998877764 456699999999999999999998 999999997
Q ss_pred -----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|.++ .+++|++|+ ++|++.+++ +++++++||||||||.++|.+++++|+++|++|+++||+
T Consensus 125 ~~~~~~g~~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~ 197 (388)
T d1gdea_ 125 PAVILAGGKPVEVPTYEEDEFRLNV-DELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVIS 197 (388)
T ss_dssp HHHHHHTCEEEEEECCGGGTTCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCEEEEeecccccCCCCCH-HHHHHhCcc------CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 56665 456789999 999999877 899999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.+ ++.+..++..+. ...+++|+++||||+| |+||+|+||++ +++++++.+.+... ...++
T Consensus 198 De~y~~~~~-~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-~~~GlR~G~ii---~~~~~~~~~~~~~~~~~~~~ 265 (388)
T d1gdea_ 198 DEVYEHFIY-DDARHYSIASLD-------GMFERTITVNGFSKTF-AMTGWRLGFVA---APSWIIERMVKFQMYNATCP 265 (388)
T ss_dssp ECTTTTCBC-TTCCCCCGGGST-------TCGGGEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHTTTCSC
T ss_pred EcCChhhhh-ccCCCCChhhcc-------CCCCeEEEEeCChhhc-cCccccEEEEE---eeccchhhhhhccccccccc
Confidence 999999988 445555555431 2235899999999999 99999999999 69999999988775 67888
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhh
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKR 389 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 389 (463)
+.+.|.++..++.+ +. +.++....++.++++++.+.+.|... ++.+..|+|++|+|++++ ..
T Consensus 266 ~~~~~~~~~~~l~~-----~~---~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~fl~~~l~--~~------- 327 (388)
T d1gdea_ 266 VTFIQYAAAKALKD-----ER---SWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIR--DT------- 327 (388)
T ss_dssp CHHHHHHHHHHHTC-----HH---HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCG--GG-------
T ss_pred cccchhhHHHHHhh-----cc---chhHHHHHHHHHHHhhhhhhhhhhhc-cccccCCCceEEEEEECC--CC-------
Confidence 89999999888863 22 33445567888999999999999887 788889999999996654 21
Q ss_pred cCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 390 AGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 390 ~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
..++.+++..+++++||.+.||+.|+.. +++|+|||++.+++++++++++|++++++.
T Consensus 328 --~~~~~~~~~~ll~e~gV~v~PG~~F~~~-~~~~iRis~~~~~e~l~~al~rL~~~l~e~ 385 (388)
T d1gdea_ 328 --GLTSKKFSELMLKEARVAVVPGSAFGKA-GEGYVRISYATAYEKLEEAMDRMERVLKER 385 (388)
T ss_dssp --TCCHHHHHHHHHHHTCEECEEGGGGCGG-GTTBEEEECCSCHHHHHHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHhCCEEEEechhhCCC-CCCEEEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 1246777888899999999999999863 567999999988899999999999988764
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.6e-55 Score=441.22 Aligned_cols=369 Identities=27% Similarity=0.441 Sum_probs=304.1
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
..|+|+.++. +.|+++...+++++++|++||+|+.|+|... +.|. |+.+++++
T Consensus 3 ~~s~r~~~~~-~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~---------------------df~~-----p~~i~~a~ 55 (395)
T d1xi9a_ 3 RASKRALSVE-YAIRDVVLPARELEKKGIKVIRLNIGDPVKF---------------------DFQP-----PEHMKEAY 55 (395)
T ss_dssp CCCHHHHTCC-C-------CHHHHHHTTCCCEECCCCCGGGT---------------------TCCC-----CHHHHHHH
T ss_pred cchhccccCc-HHHHHHHHHHHHHHHCCCCeEECCCCCCCCC---------------------CCCC-----CHHHHHHH
Confidence 4678998885 6799999999999999999999999999531 1144 88999999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+++.. ..++|+++.|+++||++|++++++++|+.+++++|++|+|+++++.+++.+++ ++||.|+++
T Consensus 56 ~~a~~~---~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~-~~Gd~vlv~~P~y~~~~ 131 (395)
T d1xi9a_ 56 CKAIKE---GHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL-DPGDEILVPGPSYPPYT 131 (395)
T ss_dssp HHHHHT---TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHH
T ss_pred HHHHhc---CCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhc-CCCCEEEEcCCccccch
Confidence 998876 45789999999999999999999999999999999999999999999999998 999999997
Q ss_pred -----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ ..++|.+|. +.+++.+.+ ++++|+++|||||||.+++.+++++|+++|++|+++||+
T Consensus 132 ~~~~~~g~~~v~v~~~~~~~~~~d~-~~~~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~ 204 (395)
T d1xi9a_ 132 GLVKFYGGKPVEYRTIEEEDWQPDI-DDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVIS 204 (395)
T ss_dssp HHHHHTTCEEEEEEEEGGGTSEECH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred hhhhhcCCEEEEEeccccccccchH-HHHHHhhcc------cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEe
Confidence 66665 466789999 999998876 899999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh----hhhc
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI----ASIA 306 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~----~~~~ 306 (463)
||+|.++.|+ . +..+...+ ....++|+++||||+| ++||+|+||+++.+ +...+..+.+. ....
T Consensus 205 De~y~~~~~~-~-~~~~~~~~--------~~~~~vi~~~S~SK~~-~~~GlRvG~~~~~~-~~~~~~~~~~~~~~~~~~~ 272 (395)
T d1xi9a_ 205 DEIYDLMTYE-G-EHISPGSL--------TKDVPVIVMNGLSKVY-FATGWRLGYMYFVD-PENKLSEVREAIDRLARIR 272 (395)
T ss_dssp ECTTTTCBSS-S-CCCCHHHH--------CSSSCEEEEEESTTTT-CCGGGCCEEEEEEC-TTCTTHHHHHHHHHHHHHT
T ss_pred cccccccccc-c-cccchhhc--------CCCCCEEEEeCcchhc-ccchhhcEeeEecC-HHHHHHHHHHHHHHhhcCC
Confidence 9999998883 3 33444443 4455899999999999 99999999987643 33333433332 2346
Q ss_pred ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHH
Q 041151 307 LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEA 386 (463)
Q Consensus 307 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~ 386 (463)
++++.+.|.++..++.+.. ++.++.++.|+++++.+.+.|++++++.+..|+|+||+|++++.+.
T Consensus 273 ~~~~~~~q~a~~~~l~~~~----------~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~gg~~~~~~l~~~~----- 337 (395)
T d1xi9a_ 273 LCPNTPAQFAAIAGLTGPM----------DYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGP----- 337 (395)
T ss_dssp CCSCSHHHHHHHHHHHSCC----------HHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCS-----
T ss_pred CCcCHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHHHHHHHhCCCceecCCCeeEEEeEECCCCC-----
Confidence 7889999999988875322 3455578889999999999999987788999999999998776432
Q ss_pred HhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 387 AKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 387 ~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
..++.+++.++++++||.+.||+.|+.. +.+|+||+++.+.+++++++++|++++++
T Consensus 338 -----~~~~~~~~~~ll~~~gV~v~PG~~Fg~~-~~~~~Ris~~~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 338 -----WKNDKEFVLDVLHNAHVLFVHGSGFGEY-GAGHFRAVFLPPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp -----CSSHHHHHHHHHHHHCEECEEGGGGCGG-GTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHhCCEEEEcChhhCCC-CCCEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 1357788889999999999999999873 56799999998889999999999999875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-53 Score=424.53 Aligned_cols=354 Identities=24% Similarity=0.380 Sum_probs=303.7
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+|+|+.+++.|.+.++..+++++.+.|++||||+.|+|++ |. |+.+++++.
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~------------------------~~-----p~~i~~~~~ 51 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDF------------------------PT-----PEPVVEEAV 51 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSS------------------------CC-----CHHHHHHHH
T ss_pred CchhhhhCCCCHHHHHHHHHHHHHHCCCCeEECCCcCCCC------------------------CC-----CHHHHHHHH
Confidence 5899999999999999999999999999999999999996 54 889999999
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
+++.+ ...+|+++.|+++||+++++++.+.+|.++++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 52 ~~~~~---~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~vlv~~P~y~~~~~ 127 (375)
T d1o4sa_ 52 RFLQK---GEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL-DPGDEVIVFSPVWVSYIP 127 (375)
T ss_dssp HHHTT---CCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHH
T ss_pred HHHhc---CCcCCCCCcCCHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHh-CCCCEEEEccCccccchh
Confidence 88776 45789999999999999999999999999999999999999999999999998 999999996
Q ss_pred ----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|... ....+.+|. +.++....+ ++++++++|||||||.++|.+++++|+++|++|+++||+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~D 200 (375)
T d1o4sa_ 128 QIILAGGTVNVVETFMSKNFQPSL-EEVEGLLVG------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISD 200 (375)
T ss_dssp HHHHTTCEEEEEECCGGGTTCCCH-HHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccccccccccccccccchh-HHHHHhhcc------CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehH
Confidence 33333 556788888 888776666 8999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCC
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPN 310 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~ 310 (463)
|+|.++.++ ..+. +.... . +..+++|+++|+||+| ++||+|+||++ ++++.++.+...+. .....+
T Consensus 201 e~y~~~~~~-~~~~-~~~~~---~----~~~~~~i~~~S~SK~~-~l~G~R~G~~~---~~~~~~~~~~~~~~~~~~~~~ 267 (375)
T d1o4sa_ 201 EVYDSLVYT-DEFT-SILDV---S----EGFDRIVYINGFSKSH-SMTGWRVGYLI---SSEKVATAVSKIQSHTTSCIN 267 (375)
T ss_dssp CTTTTSBCS-SCCC-CHHHH---C----SSSTTEEEEEESTTTT-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTCSCC
T ss_pred hhhcccccc-cccc-ccccc---c----CCCCCEEEEeechhhc-cCCcccccccc---ccccchhhhhhhhcccccccc
Confidence 999998773 3333 33332 1 4556899999999999 99999999999 69999998887775 567777
Q ss_pred hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhc
Q 041151 311 VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRA 390 (463)
Q Consensus 311 ~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 390 (463)
...|......+... ....++.++++++.+.+.|++. |+.+..|+|+||+|++++ .
T Consensus 268 ~~~~~~~~~~~~~~-------------~~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~gg~f~~~~~~--~--------- 322 (375)
T d1o4sa_ 268 TVAQYAALKALEVD-------------NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVR--G--------- 322 (375)
T ss_dssp HHHHHHHHHHTTCC-------------CHHHHHHHHHHHHHHHHHHHHT-TCCCCCCSBSSEEEEECS--S---------
T ss_pred ccchhhhhhhcccc-------------hhhhHHHHHHHHHHHHHHHHhc-CceEecCCccEEEEEECC--C---------
Confidence 88887777766421 1234567889999999999988 999999999999997664 2
Q ss_pred CCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 391 GKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 391 ~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
++.+++.++++++||.++||+.|+. + +|+||+++.+++++++++++|+++++
T Consensus 323 ---~~~~~~~~ll~~~gV~v~pG~~F~~-~--g~iRis~~~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 323 ---DDVKFCERLLEEKKVALVPGSAFLK-P--GFVRLSFATSIERLTEALDRIEDFLN 374 (375)
T ss_dssp ---CHHHHHHHHHHHHCEECEEGGGGTC-T--TEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHhCCEEEEEccccCC-C--CeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 3677888999999999999999985 2 39999999888999999999999875
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=2.1e-54 Score=436.33 Aligned_cols=381 Identities=15% Similarity=0.199 Sum_probs=307.5
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+++|+.++++++++++.+.+.+ .++|||+.|+|++ |. |+.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~I~L~~G~Pd~------------------------~~-----p~~i~eal 48 (418)
T d2r5ea1 3 DLPKRYQGSTKSVWVEYIQLAAQ-----YKPLNLGQGFPDY------------------------HA-----PKYALNAL 48 (418)
T ss_dssp CCCGGGTTCCCCHHHHHHHHHHH-----HCCEECSSSCCSS------------------------CC-----CHHHHHHH
T ss_pred chhhhhcCCCCCHHHHHHHHhcC-----CCCEEccCCCCCC------------------------CC-----CHHHHHHH
Confidence 57899999999999999776554 2689999999996 54 88899999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+++.+.....++|+++.|+++||++||+|+.+++|.++++ ++|++|+|+++++..++++++ +|||.|++|
T Consensus 49 ~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~-~~gd~vlv~~P~y~~~ 127 (418)
T d2r5ea1 49 AAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV-DEGDEVIIIEPFFDCY 127 (418)
T ss_dssp HHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTH
T ss_pred HHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhcc-ccccceeccccccchh
Confidence 99887643356789999999999999999999999999885 799999999999999999998 999999997
Q ss_pred ------cCcee--------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 162 ------FHTTW--------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 162 ------~g~~~--------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
.|+++ ....+..+. +.+...... +++++++++||||||.++|.+++++|+++|
T Consensus 128 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a 200 (418)
T d2r5ea1 128 EPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDN-NELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLC 200 (418)
T ss_dssp HHHHHHTTCEEEEEECEESCCSSCEEGGGEECCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred hHHHHHcCCeEEEEEecccccccchhhhhhhhhH-HHHhhhhhc------cccceecCCcCccccccccHHHHHHHhhhh
Confidence 44443 123466788 888777665 899999999999999999999999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
++++++||+||+|..+.+ ++.+..++..+. +...++|++.|+||.+ ++||+|+||++ +++++++.+.+
T Consensus 201 ~~~~~~iI~De~y~~~~~-~~~~~~s~~~~~-------~~~~~~i~~~S~SK~~-~~pGlRiG~~~---~~~~~i~~~~~ 268 (418)
T d2r5ea1 201 KKWNVLCVSDEVYEHMVF-EPFEHIRICTLP-------GMWERTITIGSAGKTF-SLTGWKIGWAY---GPEALLKNLQM 268 (418)
T ss_dssp HHHTCEEEEECTTTTCBC-TTCCCCCGGGST-------TTGGGEEEEEEHHHHT-TCGGGCCEEEE---SCHHHHHHHHH
T ss_pred hcCCeeeecccchhhhcc-CCCccccccccc-------cccceeeeeecCCccc-cCCCccccccc---ccchhhhhhhh
Confidence 999999999999999988 444555554431 3346899999999999 89999999999 69999999988
Q ss_pred hhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCC
Q 041151 302 IAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLP 380 (463)
Q Consensus 302 ~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~ 380 (463)
... ..++++.+.|.++..++......... ..++.+++++.|+++++.+.+.|+++ |+.+..|+||||+|+++...
T Consensus 269 ~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~ 344 (418)
T d2r5ea1 269 VHQNCVYTCATPIQEAIAVGFETELKRLKS---PECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSL 344 (418)
T ss_dssp HHTTTTCSCCHHHHHHHHHHHHHHHTTTTS---TTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSBSSEEEEECGGG
T ss_pred cccccccccccchhhhcccccccccccccc---chhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCceeEEEEEcccc
Confidence 775 57788999998887765321000011 12234567889999999999999998 99999999999999887421
Q ss_pred hhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----CCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 381 PKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----GIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
....+........++.+++..+++++||.+.||+.|+... +++|+|||++.++++|++++++|++++.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~g~~~iRis~~~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 345 DSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQKAAEILRKWKG 416 (418)
T ss_dssp STTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHHHHTTEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred cccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCccCCCCEEEEEecCCHHHHHHHHHHHHHHHc
Confidence 1100001111223577888999999999999999998642 3469999999888999999999998863
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-52 Score=417.11 Aligned_cols=363 Identities=20% Similarity=0.274 Sum_probs=297.3
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
+|+|+.+.++|+|+++.+.+.+.++.|++||+|+.|+|++ |. |+.+++++.
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~------------------------~~-----p~~~~~al~ 51 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDL------------------------KT-----PEVFFERIY 51 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCS------------------------CC-----CTHHHHHHH
T ss_pred CChhhhcCCCCHHHHHHHHHHHHHHcCCCEEECCCCCCCC------------------------CC-----CHHHHHHHH
Confidence 5899999999999999999999999999999999999996 44 777888776
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
++.. ..++|+++.|.++||++||+|+.+++|+.+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 52 ~~~~----~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~-~~gd~V~i~~P~y~~~~~ 126 (389)
T d2gb3a1 52 ENKP----EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA-NPGDEILVLEPFYANYNA 126 (389)
T ss_dssp HTCC----SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHH
T ss_pred hcCC----CCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccc-cCCCeEEEeCCCCccccc
Confidence 5432 46889999999999999999999999999999999999999999999999998 999999997
Q ss_pred ----cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecc
Q 041151 162 ----FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDE 232 (463)
Q Consensus 162 ----~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~De 232 (463)
.|+.. ..+.+..+. +.+...+.+ ++++++++|||||||.++|.+++++|+++|++++++||+||
T Consensus 127 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De 199 (389)
T d2gb3a1 127 FAKIAGVKLIPVTRRMEEGFAIP-QNLESFINE------RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDE 199 (389)
T ss_dssp HHHHHTCEEEEEECCGGGTSCCC-TTGGGGCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cccccCccccccccccccccchh-hhhhhhccc------CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEec
Confidence 55554 333444454 555555554 89999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChH
Q 041151 233 VYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVP 312 (463)
Q Consensus 233 ay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 312 (463)
+|..+.++ +..+ +... ...++++++.|+||.+ ++||+|+||++. .++.+...+........+++.+
T Consensus 200 ~y~~~~~~-~~~~-~~~~---------~~~~~~~v~~s~sK~~-~~~GlRiG~~~~--~~~~i~~~~~~~~~~~~~~~~~ 265 (389)
T d2gb3a1 200 VYSEIVFR-GEFA-SALS---------IESDKVVVIDSVSKKF-SACGARVGCLIT--RNEELISHAMKLAQGRLAPPLL 265 (389)
T ss_dssp TTTTCBCS-SCCC-CGGG---------SCCTTEEEEEESTTTT-TCGGGCCEEEEC--SCHHHHHHHHHHHHHSCCCCHH
T ss_pred cccccccc-cccc-cccc---------cccccccccccccccc-cCcccceeeeec--cchhHHHHHhhhhhcccccccc
Confidence 99999883 3333 3222 2334788999999999 899999999994 2444555555555556777888
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 313 AQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 313 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
.|.++..++... .++.+.+++.++++++.+.+.|+++++..+..|+|++|+|++++..
T Consensus 266 ~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~g~~~~~~lp~~------------ 323 (389)
T d2gb3a1 266 EQIGSVGLLNLD----------DSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELPVE------------ 323 (389)
T ss_dssp HHHHHHHHHTCC----------HHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECSSS------------
T ss_pred cccccccccccc----------chhcccccccccccchhhhhhhhhhccccccCCCceEEEEEeCCCC------------
Confidence 888888887521 2345567888999999999999999666788899999999766422
Q ss_pred CChHHHHHHHHHh-----cCeEeeCCCCCCCCC--CCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEA-----TGISTVPGSGFGQKE--GIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 393 ~~~~~~~~~ll~~-----~gI~v~pg~~f~~~~--~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
++.+++..++++ +||.+.||+.|+..+ +.+++|||++.+++++++++++|+++++++.
T Consensus 324 -~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~~~~~~iRis~~~~~~~l~~a~~~L~~~lk~f~ 388 (389)
T d2gb3a1 324 -DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRAIDVLMEGLKMFC 388 (389)
T ss_dssp -CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhhhhhhCCEEEEeCcccccCCCCCCCEEEEEEcCCHHHHHHHHHHHHHHHHHhh
Confidence 366777777765 578999999997643 3679999999888999999999999998864
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=2.9e-52 Score=417.39 Aligned_cols=353 Identities=17% Similarity=0.243 Sum_probs=280.7
Q ss_pred HHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCC
Q 041151 27 YLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDS 106 (463)
Q Consensus 27 ~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~ 106 (463)
.....+.+..|++||+|++|+|++ |. |+.+++++.+++.. ..++|++
T Consensus 20 ~~~~~~~~~~g~~vi~l~~g~pdf------------------------~~-----p~~v~~al~~~~~~---~~~~Y~~- 66 (394)
T d1c7na_ 20 DLMYSQNPEVGNEVVPLSVADMEF------------------------KN-----PPELIEGLKKYLDE---TVLGYTG- 66 (394)
T ss_dssp HHHHHHCTTCCTTCCCCCSSSCSS------------------------CC-----CHHHHHHHHHHHHH---CCCSSBC-
T ss_pred HHHHHHhHhcCCCeEEccCCCCCC------------------------CC-----CHHHHHHHHHHHhC---CCcCCCC-
Confidence 333444555688999999999997 65 89999999998876 4567864
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee-------
Q 041151 107 RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW------- 166 (463)
Q Consensus 107 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~------- 166 (463)
|.++||++||+|+++++|+++++++|++|+|+++++..++.+++ +|||.|+++ .|++.
T Consensus 67 -g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~-~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~ 144 (394)
T d1c7na_ 67 -PTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT-KPGDGVIIITPVYYPFFMAIKNQERKIIECELLE 144 (394)
T ss_dssp -CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEE
T ss_pred -CCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcccc-ccccccccccCcccchhhHHhhhhhccccccccc
Confidence 78999999999999999999999999999999999999999998 999999996 44443
Q ss_pred cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCcc
Q 041151 167 KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFV 246 (463)
Q Consensus 167 ~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~ 246 (463)
.+..+.+|. +.++..+... ++++|++||||||||.++|.+++++|+++|++++++||+||+|.++.| ++..+.
T Consensus 145 ~~~~~~~d~-~~~~~~~~~~-----~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~-~~~~~~ 217 (394)
T d1c7na_ 145 KDGYYTIDF-QKLEKLSKDK-----NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIM-PGYEHT 217 (394)
T ss_dssp ETTEEECCH-HHHHHHHTCT-----TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBC-TTCCCC
T ss_pred ccccccchh-hhhhhhhccc-----cceEEEecccccccceeccHHHhhhhhccccccceeEecccccccccc-CCcccc
Confidence 345567888 8888776542 799999999999999999999999999999999999999999999998 444444
Q ss_pred chHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCC
Q 041151 247 SSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLK 325 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~ 325 (463)
+......+. ..+++++.|+||+| +++|+|+||+++ .++.+.+.+.+... ....+....+.++....
T Consensus 218 ~~~~~~~~~------~~~~i~~~s~SK~~-~~~G~R~g~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~---- 284 (394)
T d1c7na_ 218 VFQSIDEQL------ADKTITFTAPSKTF-NIAGMGMSNIII--KNPDIRERFTKSRDATSGMPFTTLGYKACEIC---- 284 (394)
T ss_dssp CGGGSCHHH------HTTEEEEECSHHHH-TCGGGCCEEEEC--CCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHH----
T ss_pred chhhhhccc------ccceeecccccccc-cccccccccccc--cChhhhhhhhhhhhhccccccccccchhhhhh----
Confidence 433322222 23689999999999 999999999996 56677788877765 33333334333333322
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHH
Q 041151 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLE 404 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 404 (463)
.....++.++.+..++++++.+.+.++. .+++.+..|+|+||+|++++ .. ..++.+++..+++
T Consensus 285 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~--~~---------~~~~~~~~~~Ll~ 348 (394)
T d1c7na_ 285 -----YKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFR--AL---------KMDHKAMEEFMIH 348 (394)
T ss_dssp -----HHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECG--GG---------CCCHHHHHHHHHH
T ss_pred -----hcchhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECC--CC---------CCCHHHHHHHHHH
Confidence 1122344556777888888899888876 46888889999999997664 21 1246778888899
Q ss_pred hcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 405 ATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 405 ~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
++||.+.||+.||. .+++|+|||++.++++|+++++||++++++++
T Consensus 349 ~~gV~v~pG~~Fg~-~~~~~iRis~~~~~e~i~eal~rl~~~l~~Lk 394 (394)
T d1c7na_ 349 KAQIFFDEGYIFGD-GGIGFERINLAAPSSVIQESLERLNKALKDLK 394 (394)
T ss_dssp TTCCCCEEGGGGCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred hCCEEEEcchhhCC-CCCCEEEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999986 46679999999888999999999999999874
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-52 Score=418.82 Aligned_cols=376 Identities=18% Similarity=0.255 Sum_probs=302.8
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.-++|++++.++++.++.+.+ .+.++|||++|+|++ |. |+.+.+++
T Consensus 2 ~~~~r~~~~~~~~~~~~~~~~-----~~~dvI~l~~G~p~~------------------------~~-----p~~v~~a~ 47 (418)
T d1w7la_ 2 LQARRLDGIDYNPWVEFVKLA-----SEHDVVNLGQGFPDF------------------------PP-----PDFAVEAF 47 (418)
T ss_dssp CSCGGGTTCCCCTHHHHHHHH-----HTSCCEECCCCSCSS------------------------CC-----CHHHHHHH
T ss_pred CcCccccCCCCCHHHHHHHHh-----CCCCCEECCCCCCCC------------------------CC-----CHHHHHHH
Confidence 357899999999998776542 567899999999996 54 88899999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------- 161 (463)
.+++.+. ...++|+++.|+++||++||+++++++|+++++ ++|++|+|+++++..++.+++ ++||.|+++
T Consensus 48 ~~al~~~-~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~g~~vlv~~p~~~~y 125 (418)
T d1w7la_ 48 QHAVSGD-FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIIIEPFFDCY 125 (418)
T ss_dssp HHHTSSC-GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTH
T ss_pred HHHHhCC-CcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhc-cCCceeeccccccchh
Confidence 8888752 245689999999999999999999999999886 689999999999999999998 999999997
Q ss_pred ------cCcee----------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 162 ------FHTTW----------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 162 ------~g~~~----------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
.|.++ ...++.+|. +++.....+ ++++|++++||||||.++|.+++++|++
T Consensus 126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~------~~~~i~~~~p~NPtG~~~s~~~~~~i~~ 198 (418)
T d1w7la_ 126 EPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDP-MELAGKFTS------RTKALVLNTPNNPLGKVFSREELELVAS 198 (418)
T ss_dssp HHHHHHTTCEEEEEECEECC---CCSEEGGGEECCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHH
T ss_pred HHHHHHcCCEeeccccccccccccccccccCcccch-hhhhccccc------cccceeccCcCCcccccccHHHHHHHHH
Confidence 45443 134566777 777666555 7899999999999999999999999999
Q ss_pred HhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 220 FCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 220 ~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+|++++++||+||+|.++.| ++.++.++..+. +..+++|++.|+||.+ ++||+|+||++ +++++++.+
T Consensus 199 ~a~~~~v~vI~De~Y~~l~~-~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~-~~pG~RvG~~v---~~~~~~~~l 266 (418)
T d1w7la_ 199 LCQQHDVVCITDEVYQWMVY-DGHQHISIASLP-------GMWERTLTIGSAGKTF-SATGWKVGWVL---GPDHIMKHL 266 (418)
T ss_dssp HHHHHTCEEEEECTTTTCBC-TTCCCCCGGGST-------TTGGGEEEEEEHHHHT-TCGGGCCEEEE---CCHHHHHHH
T ss_pred HHHhcCCCchhhhhhHHhhc-CCCCCCCHHHcc-------ccccccceecccCccc-cCCCCcccccc---cchhhhhhh
Confidence 99999999999999999999 455555655431 2235899999999999 89999999999 699999999
Q ss_pred Hhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc
Q 041151 300 YKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR 378 (463)
Q Consensus 300 ~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~ 378 (463)
.+... ...+++.+.|.++..++.... .......++....++.|+++++.+.+.|+++ |+.+..|+||||+|++++
T Consensus 267 ~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~ 342 (418)
T d1w7la_ 267 RTVHQNSVFHCPTQSQAAVAESFEREQ---LLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQGSYFLITDIS 342 (418)
T ss_dssp HHHHHTTTSCCCHHHHHHHHHHHHHHH---HTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSBSSEEEEECH
T ss_pred ccccccccccccchhhHHHHHHhhhcc---ccccccccccccchhhhhhhhhhhhhhhhhc-CCcccCCCceeEEEEECc
Confidence 98886 678889999999888764211 0000112345567888999999999999998 999999999999997664
Q ss_pred CChhhHHHHhh----cCCCChHHHHHHHHHhcCeEeeCCCCCCCC----CCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 379 LPPKAIEAAKR----AGKVPDVFYCLRLLEATGISTVPGSGFGQK----EGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 379 ~~~~~~~~~~~----~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~----~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
... ..... ....++.+++.++|+++||.+.||+.|+.. .+.+|+|||++.+++++++++++|+++.
T Consensus 343 --~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~~~~~~iRis~~~~~~~l~~a~~rl~~~~ 416 (418)
T d1w7la_ 343 --DFK-RKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATLQAMDEKLRKWK 416 (418)
T ss_dssp --HHH-HHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred --ccc-cccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCccCCCCCEEEEEEcCCHHHHHHHHHHHHHHh
Confidence 110 00000 112236788899999999999999999752 3457999999988899999999998765
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-51 Score=407.86 Aligned_cols=355 Identities=19% Similarity=0.303 Sum_probs=296.3
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHY 92 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~ 92 (463)
.++..++.+.+.++...+ .++++|||+.|+|++ |. |+.+.+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~a-----~~~~~i~l~~G~Pd~------------------------~~-----p~~i~~a~~~~ 51 (382)
T d1u08a_ 6 SKLPQLGTTIFTQMSALA-----QQHQAINLSQGFPDF------------------------DG-----PRYLQERLAHH 51 (382)
T ss_dssp CSCCCCCCCHHHHHHHHH-----HHTTCEECCCSSCSS------------------------CC-----CHHHHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHh-----ccCCCEEccCCCCCC------------------------CC-----CHHHHHHHHHH
Confidence 345556666666665543 445899999999996 54 88899999888
Q ss_pred hhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----------
Q 041151 93 LSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL---------- 161 (463)
Q Consensus 93 ~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---------- 161 (463)
+.+ ..++|++..|+++||++||+|+++++|++++++ +|++|+|+++++.+++.+++ ++||.|+++
T Consensus 52 ~~~---~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~ 127 (382)
T d1u08a_ 52 VAQ---GANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV-RNGDEVICFDPSYDSYAPA 127 (382)
T ss_dssp HHT---TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHH
T ss_pred Hhc---CCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc-cccceEEEecccccchhhh
Confidence 876 567999999999999999999999999998887 59999999999999999998 999999997
Q ss_pred ---cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 162 ---FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 162 ---~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
.|+.. ....+.+|+ +++++.+.+ ++++|+++|||||||.+++.+++++|+++|++++++++.|++
T Consensus 128 ~~~~g~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~ 200 (382)
T d1u08a_ 128 IALSGGIVKRMALQPPHFRVDW-QEFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEV 200 (382)
T ss_dssp HHHTTCEEEEEECCTTTCCCCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECT
T ss_pred hhhccccceecccccccccCCH-HHHhhhhcc------CccEEEECCCCcccccccccccchhhhhhhccccceeeeecc
Confidence 55444 567788999 999988777 899999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChH
Q 041151 234 YQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVP 312 (463)
Q Consensus 234 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 312 (463)
|..+.+. +....+.... +. ..+++|++.|+||.+ ++||+|+||++ +++++++.+.+... ..++++.+
T Consensus 201 ~~~~~~~-~~~~~~~~~~-~~------~~~~~i~~~s~SK~~-~~pG~RiG~~v---~~~~~~~~~~~~~~~~~~~~~~~ 268 (382)
T d1u08a_ 201 YEHINFS-QQGHASVLAH-PQ------LRERAVAVSSFGKTY-HMTGWKVGYCV---APAPISAEIRKVHQYLTFSVNTP 268 (382)
T ss_dssp TTTCBCC-SSCCCCGGGS-HH------HHTTEEEEEEHHHHT-TCGGGCCEEEE---CCHHHHHHHHHHHHHHTSSCCHH
T ss_pred hhhcccc-cccccccccc-cc------ccCcEEEEeeccccc-cCCcccchhhh---ccchhHHHHHhhhcccccccccc
Confidence 9988774 3333232221 11 123689999999999 89999999999 69999999988876 67889999
Q ss_pred HHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCC
Q 041151 313 AQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGK 392 (463)
Q Consensus 313 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (463)
.|.++..+++.. .++...+++.|+++++.+.+.++.. |+.+..|+||||+|++++... .
T Consensus 269 ~q~a~~~~l~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p~gg~~~~~~~~~~~----------~ 327 (382)
T d1u08a_ 269 AQLALADMLRAE----------PEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVS----------T 327 (382)
T ss_dssp HHHHHHHHHHHC----------THHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTC----------C
T ss_pred cccccccccccc----------hHHHHHHHHHHHhhhhhhhhhhccC-CcEEecCCceEEEEEecCCCC----------C
Confidence 999999998532 2345567889999999999999876 899999999999997765221 2
Q ss_pred CChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEecCCcCcHHHHHHHHHH
Q 041151 393 VPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKK 445 (463)
Q Consensus 393 ~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~~~~e~i~~~~~~l~~ 445 (463)
.++.+++.++++++||.+.||+.|+.. .+++|+|||++.++|+++++++||++
T Consensus 328 ~d~~e~~~~ll~e~gV~v~PG~~F~~~~~~~~~~Ris~~~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 328 LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 381 (382)
T ss_dssp SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHCCEEEEcchhhCCCCCCCCEEEEEEeCCHHHHHHHHHHHhC
Confidence 357888889999999999999999864 35679999999888999999999975
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.8e-51 Score=414.10 Aligned_cols=373 Identities=19% Similarity=0.280 Sum_probs=290.5
Q ss_pred hccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhc
Q 041151 17 KVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLT 96 (463)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~ 96 (463)
+..-++++.+...++ ....+++||+|++|+|+. +.| ...++.+++++.+++..
T Consensus 10 ~~~~~pir~~~~~~~-~~~~~~~vI~L~~G~p~~----------------------~~~---~~~~~~~~~~~~~~~~~- 62 (412)
T d1bw0a_ 10 GLVFNPIRTVSDNAK-PSPSPKPIIKLSVGDPTL----------------------DKN---LLTSAAQIKKLKEAIDS- 62 (412)
T ss_dssp HTCCCHHHHHHHTCC-CCCSCSCCEECCCCCTTT----------------------TSC---SCCCHHHHHHHHHHHHT-
T ss_pred cCCccHHHHHHHhcC-CCCCCCCcEECcCCCCCC----------------------CCC---ccccHHHHHHHHHHhhC-
Confidence 444566776654332 222456799999999985 111 12367888888887765
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHHhcC------CCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---------
Q 041151 97 SGGLGAYSDSRGIPGVRKEVAEFIERRDG------YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------- 161 (463)
Q Consensus 97 ~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g------~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------- 161 (463)
...++|++..|+++||++||+|++++++ ..+++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 63 -~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~ 140 (412)
T d1bw0a_ 63 -QECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC-DAGDYALVPQPGFPHYET 140 (412)
T ss_dssp -TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHH
T ss_pred -CCCCCCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhh-ccccceeeeeccchhhhh
Confidence 3567899999999999999999998864 45889999999999999999999998 999999997
Q ss_pred ----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEec
Q 041151 162 ----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGD 231 (463)
Q Consensus 162 ----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~D 231 (463)
.|+++ ..+++.+++ +.+++...+ ++++++++|||||||.+++.+++++|+++|++++++||+|
T Consensus 141 ~~~~~G~~~~~v~~~~~~~~~~~~-~~l~~~~~~------~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~D 213 (412)
T d1bw0a_ 141 VCKAYGIGMHFYNCRPENDWEADL-DEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSD 213 (412)
T ss_dssp HHHHTTCEEEEEEEEGGGTTEECH-HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhhccCccccccccccccccchhh-HHHHhhhhc------cccccccccccccccccchhhhccccccccccCCeeeech
Confidence 67766 456788999 999988776 8999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCC---ChhHHHHHHhhhhhccc
Q 041151 232 EVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNI---PPKTVDEIYKIASIALS 308 (463)
Q Consensus 232 eay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~---~~~~~~~l~~~~~~~~~ 308 (463)
|+|.++.|+ +..+.+.......+ +...++++++|+||.+ +++|+|+||+++++. ...++....+......+
T Consensus 214 e~Y~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
T d1bw0a_ 214 EIYAGMVFK-GKDPNATFTSVADF----ETTVPRVILGGTAKNL-VVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCG 287 (412)
T ss_dssp CTTTTCBCC-SSCTTCCCCCTTSS----CCSCCEEEEEESTTTT-SCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTC
T ss_pred hhHHHhccC-CCCCcccccccccc----ccccccccccccCccC-ccCCCCcccccccchhhcchhhhhhhccccccccC
Confidence 999999984 33332222111222 4445789999999999 999999999986321 12334444444443455
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
++.+.|.++...+... ..++..++++.|+++++.+.+.|.+.+|+.+..|+||||+|++++.+..
T Consensus 288 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~------ 352 (412)
T d1bw0a_ 288 PCTVVQAALGEALLNT---------PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKY------ 352 (412)
T ss_dssp SCHHHHHHHHHHHHSS---------CHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGB------
T ss_pred Cchhhhhhcccccccc---------cccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhc------
Confidence 6666666665554311 1344556888999999999999988779999999999999987764321
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+..++.+++..+++++||.+.||+.|+. ++|+|||++.++++++++++||+++++++
T Consensus 353 -~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~---~g~iRis~~~~~e~l~eal~Rl~~~l~~~ 410 (412)
T d1bw0a_ 353 -RDIKTDVEFFEKLLEEENVQVLPGTIFHA---PGFTRLTTTRPVEVYREAVERIKAFCQRH 410 (412)
T ss_dssp -SSCCSHHHHHHHHHHHHCEECEEGGGGTC---TTEEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCCHHHHHHHHHHhCCEEEEeccccCC---CCeEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 12346788899999999999999999985 24999999988899999999999998775
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-50 Score=406.29 Aligned_cols=374 Identities=17% Similarity=0.236 Sum_probs=294.9
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHH-
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIAR- 88 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a- 88 (463)
.+|++..++++|.|+++++.+ .++++|+|+.|.|+. ..||...+.+
T Consensus 15 ~~s~~~~~~~~s~ir~~~~~~-----~~~~~I~l~~G~Pd~----------------------------~~~P~~~~~~~ 61 (420)
T d1vp4a_ 15 KISKIGQNMKSSIIREILKFA-----ADKDAISFGGGVPDP----------------------------ETFPRKELAEI 61 (420)
T ss_dssp HCCHHHHTCCCCCHHHHTTTT-----TSTTCEECCCCSCCG----------------------------GGSCHHHHHHH
T ss_pred HHhHHHHhCCCcHHHHHHHHh-----CCCCcEecCCcCCCC----------------------------ccCCHHHHHHH
Confidence 377888889999999987642 577899999999983 1235544444
Q ss_pred HHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCC-CCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------
Q 041151 89 AKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYP-SDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------ 161 (463)
Q Consensus 89 ~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~-~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------ 161 (463)
+.+++........+|+++.|+++||++||+|+++++|+. +++++|++|+|+++++..++.+++ +|||.|++|
T Consensus 62 ~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~-~~Gd~Vlv~~P~y~~ 140 (420)
T d1vp4a_ 62 AKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLG 140 (420)
T ss_dssp HHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCHH
T ss_pred HHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhh-ccccccccccccccc
Confidence 445555432245789999999999999999999999987 789999999999999999999998 999999997
Q ss_pred -------cCcee---cCCCcccChHHHHHHHHHHHHhcC--CceeEE-EEECCCCCCccCCCHHHHHHHHHHhhhCCeEE
Q 041151 162 -------FHTTW---KRQQIGVLIINDLQQSVAQARSKG--ITVRAM-VIINPGNPTGQCLSEANLREILRFCYQENLVL 228 (463)
Q Consensus 162 -------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~--~~~~~i-~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~v 228 (463)
.|+++ +.+..++|+ +.++..+.+..... .+++.+ ++++||||||.+++.+++++|+++|++++++|
T Consensus 141 ~~~~~~~~g~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~i 219 (420)
T d1vp4a_ 141 AINAFRQYLANFVVVPLEDDGMDL-NVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFI 219 (420)
T ss_dssp HHHHHHTTTCEEEEEEEETTEECH-HHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred hhHHHHHHhhhccccccccccccc-chhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccc
Confidence 66665 556677888 88888776543321 234444 55699999999999999999999999999999
Q ss_pred EecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcc
Q 041151 229 LGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IAL 307 (463)
Q Consensus 229 i~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~ 307 (463)
|+||+|.++.|+ +....+.... +..+++++++|+||++ ++|+|+||++ +++++++.+.+... ...
T Consensus 220 i~De~y~~l~~~-~~~~~~~~~~--------~~~~~~i~~~s~sk~~--~~G~RiG~~~---~~~~~i~~l~~~~~~~~~ 285 (420)
T d1vp4a_ 220 VEDDPYGALRYE-GETVDPIFKI--------GGPERVVLLNTFSKVL--APGLRIGMVA---GSKEFIRKIVQAKQSADL 285 (420)
T ss_dssp EEECSSTTCBCS-SCCCCCHHHH--------HCTTTEEEEEESTTTT--CGGGCEEEEE---CCHHHHHHHHHHHHHHHS
T ss_pred cccchhhhcccc-Cccccccccc--------ccccceeEEecccccc--cccccccccc---ccchhhhhhhhhhhhccc
Confidence 999999999884 4444444433 3345789999999976 3999999999 69999999988876 567
Q ss_pred cCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCcccccCCceeEEeeeccCChhh
Q 041151 308 SPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS----CRNVVCNFTEGAMYSFPQIRLPPKA 383 (463)
Q Consensus 308 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~pg~~~~~~~g~~~~~~~~~~~~~~ 383 (463)
+++.+.|.+++.++.... +.++.++.++.|+++++.+.+.|.+ .||+.+..|+||||+|++++ .+.
T Consensus 286 ~~~~~~q~~~a~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~--~~~ 355 (420)
T d1vp4a_ 286 CSPAITHRLAARYLERYD--------LLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLP--EGF 355 (420)
T ss_dssp SCCHHHHHHHHHHHHHSC--------HHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECC--TTC
T ss_pred cCchhhhhhhhhhccccc--------ccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECC--CCC
Confidence 889999998888875321 3344455677788887777777654 47899999999999996653 321
Q ss_pred HHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 384 IEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
++.++ .++|+++||.+.||+.|+.. .+.+++|||++ .+++++++++++|+++++++.++
T Consensus 356 ----------d~~~~-~~~l~~~gV~v~PG~~F~~~~~~~~~iRls~~~~~~e~l~~a~~rL~~~l~~~~~~ 416 (420)
T d1vp4a_ 356 ----------DTWEM-FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREVVLEYGKE 416 (420)
T ss_dssp ----------CTTTT-HHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHH-HHHHHHCCeEEEechhhCCCCCCCCEEEEEeCcCCHHHHHHHHHHHHHHHHHhhHh
Confidence 23343 45678899999999999864 24579999998 77889999999999999999876
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=9.8e-50 Score=400.13 Aligned_cols=375 Identities=19% Similarity=0.245 Sum_probs=294.3
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH-
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA- 87 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 87 (463)
..+|++++++.+|.||++...+ +.+++|||+.|.|+. ..+|.+.++
T Consensus 5 ~~~~~~~~~~~~s~ire~~~~~-----~~~~~i~l~~G~P~~----------------------------~~~P~~~~~~ 51 (403)
T d1wsta1 5 SFFSEKAMLMKASEVRELLKLV-----ETSDVISLAGGLPAP----------------------------ETFPVETIKK 51 (403)
T ss_dssp GGCCHHHHHCCCHHHHHHHHHH-----TSSSCEECCCCCCCG----------------------------GGSCHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHh-----CCCCcEECCCCCCCc----------------------------cccCHHHHHH
Confidence 3689999999999999887643 457799999999983 123555554
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------ 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------ 161 (463)
++.+.+........+|++..|+++||++||+|+++++|+++++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 52 ~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~v~~~~P~y~~ 130 (403)
T d1wsta1 52 IAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFL-NPGDPIVVEAPTYLA 130 (403)
T ss_dssp HHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHH
T ss_pred HHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHh-hcCCccccCCCcchh
Confidence 4455555432345789999999999999999999999999999999999999999999999998 999999997
Q ss_pred -------cCcee---cCCCcccChHHHHHHHHHHHHhc-CCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -------FHTTW---KRQQIGVLIINDLQQSVAQARSK-GITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~-~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
.|+++ +.+..+.+. ..+.......... .+...++++++||||||.++|.+++++|+++|++||++||+
T Consensus 131 ~~~~~~~~g~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~ 209 (403)
T d1wsta1 131 AIQAFKYYDPEFISIPLDDKGMRV-DLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVE 209 (403)
T ss_dssp HHHHHHTTCCEEEEEEEETTEECH-HHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhHHHhhccccceeEeecccCCcc-ccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceecc
Confidence 55555 333444444 4444433332222 22445666679999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccC
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSP 309 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~ 309 (463)
||+|.++.| ++.+..++... ++.+++++++|+||.+ + ||+|+||++ +++++++.+..... ...++
T Consensus 210 De~y~~l~~-~~~~~~~~~~~--------~~~~~~i~~~S~SK~~-~-~G~RiG~~i---~~~~~i~~~~~~~~~~~~~~ 275 (403)
T d1wsta1 210 DGPYSELRY-SGEPTPPIKHF--------DDYGRVIYLGTFSKIL-A-PGFRIGWVA---AHPHLIRKMEIAKQSIDLCT 275 (403)
T ss_dssp ECTTTTCBC-SSCCCCCGGGG--------CSSSCEEEEEESTTTT-C-GGGCCEEEE---ECHHHHHHHHHHHHHHHSSC
T ss_pred ccchhheec-CCCCCCccccc--------CCCCcEEEEcccccee-c-Ccccccccc---cchHHHHHHHHHHhhhcccc
Confidence 999999988 45555555433 5567899999999988 6 999999999 59999999988765 56778
Q ss_pred ChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccccCCceeEEeeeccCChhhHHHH
Q 041151 310 NVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RNVVCNFTEGAMYSFPQIRLPPKAIEAA 387 (463)
Q Consensus 310 ~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (463)
+...|.+...++.. .. ...+.++.++.+.++++.+.+.|.+. .|+.+..|+|++|+|+++ |.+.
T Consensus 276 ~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p~gg~~~~~~~--~~~~---- 341 (403)
T d1wsta1 276 NTFGQAIAWKYVEN-----GY---LDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTL--PEGI---- 341 (403)
T ss_dssp CHHHHHHHHHHHHT-----TH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEEC--CTTC----
T ss_pred ccchhhhHHhhhhc-----cc---cchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCCCceeEEEEEC--CCCC----
Confidence 88888888777643 22 33445667888889999999999874 378888999999999655 4331
Q ss_pred hhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEec-CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 388 KRAGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTIL-PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 388 ~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
+.+.+.++|.++||.+.||+.|+.. .+.+++||+++ .+++++++++++|++++++.+|+
T Consensus 342 -------~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRi~~~~~~~~~l~~al~rl~~~l~~~~k~ 402 (403)
T d1wsta1 342 -------DTKLMMERAVAKGVAYVPGEAFFVHRDKKNTMRLNFTYVPEETIREGVRRLAETIKEEMKR 402 (403)
T ss_dssp -------CTTTTHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHCCEEEEechhhcCCCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 2233456677889999999999863 34579999998 78899999999999999988775
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-49 Score=388.07 Aligned_cols=337 Identities=15% Similarity=0.177 Sum_probs=270.5
Q ss_pred ceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHH
Q 041151 40 IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEF 119 (463)
Q Consensus 40 ~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 119 (463)
+|+|++|+||+ |. |+.+.+++.+.+.. ...+|++..| .++|++|+++
T Consensus 1 ~~~~~~~~~df------------------------~~-----p~~i~eal~~~~~~---~~~~Y~~~~g-~~lr~~ia~~ 47 (361)
T d1d2fa_ 1 LLPFTISDMDF------------------------AT-----APCIIEALNQRLMH---GVFGYSRWKN-DEFLAAIAHW 47 (361)
T ss_dssp CEECCSSSCSS------------------------CC-----CHHHHHHHHHHHTT---CCCCCCCSCC-HHHHHHHHHH
T ss_pred CcCcCCCCCCC------------------------CC-----CHHHHHHHHHHHhC---CCCCCCCCCC-HHHHHHHHHH
Confidence 58999999997 65 89999999988876 4568999888 6899999999
Q ss_pred HHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee-------cCCCcccChHHHH
Q 041151 120 IERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW-------KRQQIGVLIINDL 179 (463)
Q Consensus 120 ~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~-------~~~~~~~d~~~~l 179 (463)
+.+++|.++++++|++|+|+++++..++.+++ +|||+|+++ .|..+ ..+++.+|+ +.+
T Consensus 48 ~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~-~~~ 125 (361)
T d1d2fa_ 48 FSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS-ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDM-GKL 125 (361)
T ss_dssp HHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCH-HHH
T ss_pred HHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc-ccccccccccccccchhHHHHhhcceEEeeccccccccccccc-ccc
Confidence 99999999999999999999999999999998 999999996 45443 345677999 999
Q ss_pred HHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCC
Q 041151 180 QQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPF 259 (463)
Q Consensus 180 ~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (463)
++.+.+. ++++|+++|||||||.++|.+++++|+++|++++++||+||+|.++.|+ +....++...
T Consensus 126 ~~~~~~~-----~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~-~~~~~~~~~~-------- 191 (361)
T d1d2fa_ 126 EAVLAKP-----ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG-EQPHIPWSNV-------- 191 (361)
T ss_dssp HHHHTST-----TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS-SSCCCCGGGT--------
T ss_pred hhhcccC-----CceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccc-cccccccccc--------
Confidence 9988653 8999999999999999999999999999999999999999999999884 4444454432
Q ss_pred CCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH-Hhhhh-h-cccCChHHHHHHHHhcCCCCCCCchHHHHHH
Q 041151 260 SKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI-YKIAS-I-ALSPNVPAQIFMGLMVNPLKPGDISYEQFVR 336 (463)
Q Consensus 260 ~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l-~~~~~-~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 336 (463)
...+++++.|+||++ +++|+|+||+++ .++...+.. ..... . ..+++...+.++...+. ....
T Consensus 192 -~~~~~v~~~s~SK~~-~~~g~R~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----------~~~~ 257 (361)
T d1d2fa_ 192 -ARGDWALLTSGSKSF-NIPALTGAYGII--ENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQ----------QGAP 257 (361)
T ss_dssp -CCSSEEEEECSHHHH-TCGGGCCEEEEE--CSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH----------HCHH
T ss_pred -ccccccccccccccc-ccccccceeeec--chhHHHHHHhhhcccccccccchhhhHHHHHHHhh----------ccch
Confidence 234789999999999 999999999986 445444443 33333 1 22333344444333321 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC
Q 041151 337 ESKGILESLRRRARMMTDGFNS-CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG 415 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~L~~-~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~ 415 (463)
+.++.+..++++++.+.+.+.+ .+++.+..|+|+||+|+++.. .. .++.+++.++++++||.+.||+.
T Consensus 258 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~-~~----------~~~~~~~~~Ll~~~gv~v~pG~~ 326 (361)
T d1d2fa_ 258 WLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRP-LN----------IDDNALQKALIEQEKVAIMPGYT 326 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGG-GC----------CCHHHHHHHHHHTTCEECEEGGG
T ss_pred hhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccC-CC----------CCHHHHHHHHHHhCCEEEEeccc
Confidence 4556778888888888887765 568899999999999976641 11 24678888889999999999999
Q ss_pred CCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHHHHH
Q 041151 416 FGQKEGIFHLRTTILPAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 416 f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|+. .+++++|||++.+++++++++++|++++++++
T Consensus 327 F~~-~~~~~vRis~~~~~e~l~~al~rl~~~l~~lr 361 (361)
T d1d2fa_ 327 YGE-EGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR 361 (361)
T ss_dssp GCG-GGTTEEEEECCSCHHHHHHHHHHHHHHHHHHC
T ss_pred cCC-CCCCEEEEEEcCCHHHHHHHHHHHHHHHHhcC
Confidence 986 46679999999888999999999999998863
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=4.5e-48 Score=390.87 Aligned_cols=327 Identities=20% Similarity=0.348 Sum_probs=264.2
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCC--CCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCc
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGY--PSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHT 164 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~--~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~ 164 (463)
.+|+++.|.++||++||+|+++++|. ++++++|++|+|+++++..++.+++ +|||.|+++ .|+
T Consensus 77 ~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~~g~ 155 (428)
T d1iaya_ 77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLRWRTGV 155 (428)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTTTTTCC
T ss_pred ccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhC-CCCCEEEEccCCchHHHHHHHHhcCC
Confidence 57999999999999999999999875 5678999999999999999999998 999999997 355
Q ss_pred ee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccc
Q 041151 165 TW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238 (463)
Q Consensus 165 ~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~ 238 (463)
++ ..+++.+|. +.++.++......++++++|+++|||||||.+++.+++++|+++|++|+++||+||+|+++.
T Consensus 156 ~~v~v~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~ 234 (428)
T d1iaya_ 156 QLIPIHCESSNNFKITS-KAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATV 234 (428)
T ss_dssp EEEEECCCTTTTTCCCH-HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred eEEEeeccccccccccc-ccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccc
Confidence 54 456789999 99998887766666789999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHH
Q 041151 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMG 318 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~ 318 (463)
| ++.++.++.++.+.........+++++++||||.| +++|+|+||++. .++.+++.+..... ...++...|.++.
T Consensus 235 ~-~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~GlRiG~~~~--~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 309 (428)
T d1iaya_ 235 F-DTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-GLPGFRVGIIYS--FNDDVVNCARKMSS-FGLVSTQTQYFLA 309 (428)
T ss_dssp C-SSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-SCGGGCEEEEEE--SCHHHHHHHHHHHT-TSCCCHHHHHHHH
T ss_pred c-CcccccccccccchhhccccccceEEEEecCCCcc-cCCCcccccccc--cccchhhhhhhhhc-ccccccccccchh
Confidence 9 56667777766433210002345899999999999 899999999995 45667777766655 4566778887777
Q ss_pred HhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHH
Q 041151 319 LMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFY 398 (463)
Q Consensus 319 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (463)
+.+.. ...+ ..+.++.++.++++++.+.+.|+.. |+.+..|+||||+|+++..... ....+++.++
T Consensus 310 a~l~~----~~~~---~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~------~~~~~~~~~l 375 (428)
T d1iaya_ 310 AMLSD----EKFV---DNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLR------ESTFDSEMSL 375 (428)
T ss_dssp HHTTC----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSSEEEEECGGGCS------SSSHHHHHHH
T ss_pred hhhhh----hccc---cccccccccccchhHHHHHHHHHhC-CCEEecCCcceEEEEECccccc------cCCCCCHHHH
Confidence 77642 1222 3345567888999999999999886 9999999999999987752110 0001124567
Q ss_pred HHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHH
Q 041151 399 CLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 399 ~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~ 449 (463)
+..+++++||.+.||+.|+.. +.+|+|||++ .++++++++++||++++..
T Consensus 376 ~~~Ll~~~gV~v~PG~~F~~~-~~g~~Ris~a~~~~~~l~~al~Rl~~~l~~ 426 (428)
T d1iaya_ 376 WRVIINDVKLNVSPGSSFECQ-EPGWFRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp HHHHHHTSCEECEEGGGGTCS-SSSEEEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEcchhcCCC-CCCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 888899999999999999873 5679999998 5667899999999998854
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=4.3e-48 Score=391.41 Aligned_cols=329 Identities=18% Similarity=0.291 Sum_probs=265.1
Q ss_pred CCccCCCCCCHHHHHHHHHHHHHhcC--CCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cC
Q 041151 100 LGAYSDSRGIPGVRKEVAEFIERRDG--YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FH 163 (463)
Q Consensus 100 ~~~Y~~~~g~~~lr~~ia~~~~~~~g--~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g 163 (463)
...|+++.|.++||++||+|+++++| +++++++|++|+|+++++..++.+++ +|||+|++| .|
T Consensus 77 ~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~~~~~~~~~~g 155 (431)
T d1m7ya_ 77 LALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTG 155 (431)
T ss_dssp HHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTC
T ss_pred hcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHhcC
Confidence 35799999999999999999999887 45788999999999999999999998 999999997 33
Q ss_pred cee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccccc
Q 041151 164 TTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQN 237 (463)
Q Consensus 164 ~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~ 237 (463)
+++ .++++.+|. +.+++.+.+..+.+.++++|+++|||||||.+++.+++++|+++|++++++||+||+|+.+
T Consensus 156 ~~~v~v~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~ 234 (431)
T d1m7ya_ 156 VEIVPIHCTSSNGFQITE-TALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT 234 (431)
T ss_dssp CEEEEEECCGGGTSCCCH-HHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred ceeccccccchhcccccH-HHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeeccccccc
Confidence 443 455788999 9999999887777778999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccchHHHHHhcCCC--CCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHH
Q 041151 238 IYQDERPFVSSKKVLMDMGLP--FSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQI 315 (463)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~ 315 (463)
.| ++..+.++.++.++...+ ....+++|+++||||.| |++|+|+||++. +++++............++...|.
T Consensus 235 ~~-~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~-~~~G~RiG~~~~---~~~~i~~~~~~~~~~~~~~~~~~~ 309 (431)
T d1m7ya_ 235 AF-SSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDL-GLPGFRVGAIYS---NDDMVVAAATKMSSFGLVSSQTQH 309 (431)
T ss_dssp CC-SSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSS-CCGGGCEEEEEE---SCHHHHHHHHHHGGGSCCCHHHHH
T ss_pred cc-CCCCCCCHHHHhhhcccccccccCceEEEEecCcccc-cCCCCccceecc---chhhhHHHHHHHhccccccccccc
Confidence 99 456667777664433110 01235899999999999 999999999994 666665554444435666777777
Q ss_pred HHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCCh
Q 041151 316 FMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPD 395 (463)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (463)
++.+.+.. ......+.++.+..++++++.+.+.|++. |+.+.+|+||||+|++++.... .....++
T Consensus 310 ~~~a~l~~-------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~------~~~~~~~ 375 (431)
T d1m7ya_ 310 LLSAMLSD-------KKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLR------SNTFEAE 375 (431)
T ss_dssp HHHHHHHC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSS------SSSHHHH
T ss_pred hhhhhhcc-------chhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEEecCCceeEEEEECccccc------cCcccCH
Confidence 77666532 12233456668889999999999999986 9999999999999977752110 0001135
Q ss_pred HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 396 VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 396 ~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
.+++.++++++||.+.||+.|+.. +.+|+|||++ .++++++++++||+++++++
T Consensus 376 ~~l~~~ll~~~gV~v~PG~~F~~~-~~~~~Ri~~a~~~e~~l~~al~rL~~~l~~~ 430 (431)
T d1m7ya_ 376 MELWKKIVYEVHLNISPGSSCHCT-EPGWFRVCFANLPERTLDLAMQRLKAFVGEY 430 (431)
T ss_dssp HHHHHHHHHTSCEECEEGGGGTCS-STTEEEEECSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEeccccCCC-CCCEEEEEeCcCCHHHHHHHHHHHHHHHHHh
Confidence 677888899999999999999874 5569999998 56778999999999999876
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.3e-48 Score=385.46 Aligned_cols=345 Identities=21% Similarity=0.340 Sum_probs=285.5
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARA 89 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~ 89 (463)
.+|+|...++.+.+-++...+++ .++|||+.|+|++ |. |+.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~la~~-----~~~I~ls~g~p~~------------------------~~-----p~~i~~al 47 (368)
T d1v2da_ 2 RLHPRTEAAKESIFPRMSGLAQR-----LGAVNLGQGFPSN------------------------PP-----PPFLLEAV 47 (368)
T ss_dssp CCCGGGGGC---CHHHHHHHHHH-----HTCEECCCCSCSS------------------------CC-----CHHHHHHH
T ss_pred CCChhhhhcCCCHHHHHHHHhcc-----CCCEEecCCCCCC------------------------CC-----CHHHHHHH
Confidence 47889999999888877655443 2489999999986 54 89999999
Q ss_pred HHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 90 KHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 90 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
.+++.. .++|+++.|+++||++||++++ +++++|++|+|+++++..++.+++ ++||.|+++
T Consensus 48 ~~~l~~----~~~Y~~~~G~~elr~aiA~~~~------~~~~~Iiit~G~~~al~~~~~~l~-~~~d~v~~~~p~~~~~~ 116 (368)
T d1v2da_ 48 RRALGR----QDQYAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSLV-GPGDEVVVLEPFFDVYL 116 (368)
T ss_dssp HHHTTT----SCSCCCTTCCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCTTHH
T ss_pred HHHhhc----ccCCCCCcCCHHHHHHHHhhcc------cCCcceeeccchHHHHHHHhhccc-cccccccccCCcchhhh
Confidence 888764 3689999999999999999997 889999999999999999999998 899999996
Q ss_pred -----cCcee-------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEE
Q 041151 162 -----FHTTW-------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLL 229 (463)
Q Consensus 162 -----~g~~~-------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi 229 (463)
.|..+ ..+.+.+|. +.+++.+++ .+++|+++|||||||.+++.+++++|+++|++|+++||
T Consensus 117 ~~~~~~g~~~~~~~~~~~~~~~~~d~-~~l~~~~~~------~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii 189 (368)
T d1v2da_ 117 PDAFLAGAKARLVRLDLTPEGFRLDL-SALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLI 189 (368)
T ss_dssp HHHHHTTCEEEEEECEEETTEEECCH-HHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHhcCCccceeccccccccccCCH-HHHHHhhcc------CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeee
Confidence 44443 346788999 999999887 79999999999999999999999999999999999999
Q ss_pred ecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hccc
Q 041151 230 GDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALS 308 (463)
Q Consensus 230 ~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~ 308 (463)
+||+|..+.+. ... ..... ...++++++.|+||.+ +++|+|+||++ +++++++.+.+... ...+
T Consensus 190 ~D~~~~~~~~~-~~~-~~~~~---------~~~~~~~~~~~~sk~~-~~~G~R~g~~~---~~~~~~~~~~~~~~~~~~~ 254 (368)
T d1v2da_ 190 SDEVYDELYYG-ERP-RRLRE---------FAPERTFTVGSAGKRL-EATGYRVGWIV---GPKEFMPRLAGMRQWTSFS 254 (368)
T ss_dssp EECTTTTCBSS-SCC-CCHHH---------HCTTTEEEEEEHHHHT-TCGGGCCEEEE---CCTTTHHHHHHHHHHHTSS
T ss_pred echhhhhhccc-ccc-ccccc---------ccccccceeecccccc-ccccccccccc---ccccccchhhhhhhccccc
Confidence 99999877652 222 22222 1223678899999998 99999999999 68999999988876 6788
Q ss_pred CChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHh
Q 041151 309 PNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAK 388 (463)
Q Consensus 309 ~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~ 388 (463)
++.+.|.++..++.. ....++.+.+++.|+++++.+.+.|+++ |+.+..|+|++|+|++++ ..
T Consensus 255 ~~~~~q~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~--~~------ 317 (368)
T d1v2da_ 255 APTPLQAGVAEALKL--------ARREGFYEALREGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP--GW------ 317 (368)
T ss_dssp CCHHHHHHHHHHHHH--------HHHTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECT--TC------
T ss_pred ccccccccccccccc--------ccchhhHHHHHHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeCC--cc------
Confidence 999999998888742 1233456678889999999999999998 999999999999997654 21
Q ss_pred hcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-CCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 389 RAGKVPDVFYCLRLLEATGISTVPGSGFGQK-EGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 389 ~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~-~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
+ +.++|+++||.++||+.|+.. ++++++|||++.+++++++++++|++++
T Consensus 318 ------~---~~~ll~~~gI~v~pg~~F~~~~~~~~~iRis~~~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 318 ------D---AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVV 368 (368)
T ss_dssp ------C---HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred ------H---HHHHHHhCCEEEEechhhCCCCCCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence 2 235688999999999999753 4567999999988899999999999864
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=5.6e-44 Score=357.77 Aligned_cols=359 Identities=13% Similarity=0.100 Sum_probs=273.7
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhc-ccceeccCCC---CcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEG-KKIIFTNVGN---PHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADA 85 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 85 (463)
++.+++...|+++|..+... .+++. .++|||++|. |+. ..|. ++.+
T Consensus 2 ~~~~~~~~~p~d~i~~~~~~---~~~d~~~~~InL~iG~~~d~~~----------------------~~~~-----~~~V 51 (401)
T d7aata_ 2 SWWSHVEMGPPDPILGVTEA---FKRDTNSKKMNLGVGAYRDDNG----------------------KPYV-----LNCV 51 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHH---HHHCCCTTCEECCCCSCCCTTS----------------------CCCC-----CHHH
T ss_pred CccccCCCCCCChHHHHHHH---HhCCCCCCcEEccCCCCcCCCC----------------------CCCC-----CHHH
Confidence 44566667778877766554 44443 3489999994 331 1122 5777
Q ss_pred HHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcH-----HHHHHHHHHHhcCCCCEEEE
Q 041151 86 IARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGAS-----KGVMQTLNCVIRGEGDGVVL 160 (463)
Q Consensus 86 ~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~-----~al~~~~~~l~~~~gd~Vlv 160 (463)
.++....+.. ...++|+++.|.++||+++++++.++++..+++++|+++.|+. +++..++++++ +|||+|++
T Consensus 52 ~~a~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~-~pGd~Vlv 128 (401)
T d7aata_ 52 RKAEAMIAAK--KMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF-KFSRDVYL 128 (401)
T ss_dssp HHHHHHHHHT--TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC-TTCCEEEE
T ss_pred HHHHHHHhhC--CCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhc-CCCceEEE
Confidence 7777776665 2456899999999999999999998888878888888765543 57888888898 99999999
Q ss_pred c-------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 161 L-------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 161 p-------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
| +|+++ .++.+..|+ +.+.+.+... .+++++|++++||||||.++|.+++++|+++|
T Consensus 129 ~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a 204 (401)
T d7aata_ 129 PKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDF-TGAMEDISKI---PEKSIILLHACAHNPTGVDPRQEQWKELASVV 204 (401)
T ss_dssp EESCCTTHHHHHHHTTCEEEEEECEETTTTEECH-HHHHHHHTTS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHH
T ss_pred ecCCCcchhhHHHHcCCeEEEEeccccccccccH-HHHHHHHhcC---CCceEEEEecCCCCCccccCCHHHHHHHHHHH
Confidence 7 77776 456788898 8888877531 12689999999999999999999999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchH-HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSK-KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
++|+++||+||+|..+.|+ +....+.. ..... ...+++++.|+||.+ +++|+|+||++. +...++.+.
T Consensus 205 ~~~~~~ii~De~Y~~l~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~sk~~-~~~G~RiG~~~~---~~~~~~~~~ 273 (401)
T d7aata_ 205 KKRNLLAYFDMAYQGFASG-DINRDAWALRHFIE------QGIDVVLSQSYAKNM-GLYGERAGAFTV---ICRDAEEAK 273 (401)
T ss_dssp HHTTCEEEEEESCTTTTTS-CHHHHTHHHHHHHH------TTCCCEEEEECTTTS-CCGGGCEEEEEE---ECSSHHHHH
T ss_pred hcceEEEEEeccchhhhcC-Ccccchhhhhhhhh------hhcccceeEeccccc-eeeccccceeec---chHHHHHHH
Confidence 9999999999999999983 32222221 11122 233678999999999 999999999995 655555544
Q ss_pred hhh--------hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCc
Q 041151 301 KIA--------SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEG 369 (463)
Q Consensus 301 ~~~--------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g 369 (463)
+.. ....+++.+.|.++..++.+. ....++..+.+..+++|+++++.+.+.|++.. .|.+..|+|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~ 349 (401)
T d7aata_ 274 RVESQLKILIRPMYSNPPMNGARIASLILNTP----ELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQI 349 (401)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCC
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECCCC
Confidence 332 134677889999998888632 23344556677889999999999999999862 256778999
Q ss_pred eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHH
Q 041151 370 AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~ 448 (463)
|||+|+.+ +.+++.+|++++||.+.|| .|||++ .++++|+.+.++|.++++
T Consensus 350 G~F~~~~l-----------------s~e~~~~L~~e~gV~~~pg-----------~Ris~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 350 GMFCFTGL-----------------KPEQVERLTKEFSIYMTKD-----------GRISVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp SSEEECCC-----------------CHHHHHHHHHHHCEECCTT-----------CEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred eEEEecCC-----------------CHHHHHHHHHhCCEEECCC-----------cEEEeccCCHHHHHHHHHHHHHHhC
Confidence 99999433 2356788999999999996 399998 888999999999988763
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2e-42 Score=340.81 Aligned_cols=328 Identities=13% Similarity=0.139 Sum_probs=248.8
Q ss_pred HHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCccCC
Q 041151 26 LYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSD 105 (463)
Q Consensus 26 ~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~Y~~ 105 (463)
+...+.++...+.++|||+.|.+.+ +. |+.+++++.+++.. ...|++
T Consensus 10 ~~~~~~~~g~~p~~~idls~~~np~------------------------~~-----p~~~~~a~~~~~~~----~~~Yp~ 56 (355)
T d1lc5a_ 10 IREPATVLGISPDQLLDFSANINPL------------------------GM-----PVSVKRALIDNLDC----IERYPD 56 (355)
T ss_dssp CHHHHHHHTSCGGGSEECSSCCCTT------------------------CC-----CHHHHHHHHHTGGG----GGSCCC
T ss_pred HHHHHHHhCCChhheEEccCCCCCC------------------------CC-----CHHHHHHHHHHHHH----hccCCC
Confidence 3334444555566799999995443 33 88899998887654 467865
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------cCcee------cC
Q 041151 106 SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------FHTTW------KR 168 (463)
Q Consensus 106 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------~g~~~------~~ 168 (463)
+ +..+||+++|++++ +++++|++|+|+++++..++.++. ++++.|..| .+..+ .+
T Consensus 57 ~-~~~~Lr~aia~~~~------v~~~~I~~~~g~~~~~~~~~~~~~-~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~ 128 (355)
T d1lc5a_ 57 A-DYFHLHQALARHHQ------VPASWILAGNGETESIFTVASGLK-PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREA 128 (355)
T ss_dssp T-TCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHHC-CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGG
T ss_pred C-ChHHHHHHHHHHhC------CCHHHEEecccHHHHHHHHHhhhc-cccccccCCccceeccccccccccceeeeeecc
Confidence 4 66899999999986 889999999999999999888774 555666666 33333 34
Q ss_pred CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccch
Q 041151 169 QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSS 248 (463)
Q Consensus 169 ~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~ 248 (463)
+++.++ +.+++.+.. ++++|+++|||||||.+++.+++.+|+++|++|++++|+||+|.++.+. .......
T Consensus 129 ~~~~~~--~~~~~~~~~------~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~-~~~~~~~ 199 (355)
T d1lc5a_ 129 DGWQLT--DAILEALTP------DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH-ETGFIPA 199 (355)
T ss_dssp GTTCCC--TTHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT-CCCSGGG
T ss_pred CCccce--eeeeecccc------ccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeee-ccccccc
Confidence 455555 445555554 8999999999999999999999999999999999999999999998763 3322221
Q ss_pred HHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh-HHHHHHhhhhhcccCChHHHHHHHHhcCCCCCC
Q 041151 249 KKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK-TVDEIYKIASIALSPNVPAQIFMGLMVNPLKPG 327 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~ 327 (463)
. ...+++|+++||||++ |+||+|+||++. +.+ +.+.+.+... .++.+.+.|.++..++++
T Consensus 200 ~----------~~~~~~i~~~S~SK~~-~l~GlR~G~~i~---~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~l~~---- 260 (355)
T d1lc5a_ 200 L----------KDNPHIWVLRSLTKFY-AIPGLRLGYLVN---SDDAAMARMRRQQM-PWSVNALAALAGEVALQD---- 260 (355)
T ss_dssp C----------TTCTTEEEEEESTTTT-TCTTTCCEEEEC---CCHHHHHHHHHHSC-TTCSCHHHHHHHHHGGGC----
T ss_pred c----------cccccceeeccccccc-ccccccccceec---cchhhhHHHHhhcC-Cccccccccccccccccc----
Confidence 1 3345799999999999 999999999994 544 4555555444 678899999999999863
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC
Q 041151 328 DISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG 407 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g 407 (463)
..+..+.++.++++++.+.+.|.+++|+.+. |.+++|+|++++. ++.+++ +.|.++|
T Consensus 261 -------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~--------------~~~~~~-~~L~~~g 317 (355)
T d1lc5a_ 261 -------SAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER--------------EDIDLQ-RRLLTQR 317 (355)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC--------------TTCCHH-HHHHTTT
T ss_pred -------cchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC--------------CHHHHH-HHHHHCC
Confidence 2334456778899999999999998888765 5677888976652 133444 4466789
Q ss_pred eEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 408 ISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 408 I~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
|.|+||+.|+.. +.+|+|||++ +++++++++++|++++
T Consensus 318 v~vr~~~~f~~~-~~~~iRis~~-~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 318 ILIRSCANYPGL-DSRYYRVAIR-SAAQNERLLAALRNVL 355 (355)
T ss_dssp EECEECTTSTTC-CTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred cEEEeCccCCCC-CCCEEEEEeC-CHHHHHHHHHHHHHhC
Confidence 999999999753 4569999997 5688999999998764
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=1.1e-42 Score=349.48 Aligned_cols=363 Identities=12% Similarity=0.103 Sum_probs=266.5
Q ss_pred hhhhhhhhhccchhhhhHHHHHHHHHHh-cccceeccCC---CCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHH
Q 041151 9 ESMNENVKKVQYAVRGELYLRASELQKE-GKKIIFTNVG---NPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPAD 84 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~G---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 84 (463)
+++..++.+.++.++..+ +++++++ ..++|||++| +++. ..|. ++.
T Consensus 3 ~s~~~~~~~~~~~~i~~l---~~~~~~d~~~~~Inl~iG~~~d~~g----------------------~~~~-----~~~ 52 (412)
T d1ajsa_ 3 PSVFAEVPQAQPVLVFKL---IADFREDPDPRKVNLGVGAYRTDDC----------------------QPWV-----LPV 52 (412)
T ss_dssp CCTTTTCCCCCCCHHHHH---HHHHHTCCCTTCEECCSCCCCCTTS----------------------CCCC-----CHH
T ss_pred cChhhhCCcCCCChHHHH---HHHHhcCCCCCcEEeeCCCCcCCCC----------------------CCCC-----cHH
Confidence 356667778888766655 4455554 3458999999 3332 1122 566
Q ss_pred HHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEE--EcCCcHHHHHHHHHHH-------hcCCC
Q 041151 85 AIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIF--LTDGASKGVMQTLNCV-------IRGEG 155 (463)
Q Consensus 85 ~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~~~~l-------~~~~g 155 (463)
+.++......+ ....++|+|..|.++||+++++++.+.++..+..+++. .|.|++.++..+..++ + +||
T Consensus 53 V~~a~~~~~~~-~~~~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~pG 130 (412)
T d1ajsa_ 53 VRKVEQRIANN-SSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTN-NKD 130 (412)
T ss_dssp HHHHHHHHHTC-TTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSS-CCC
T ss_pred HHHHHHHHHhC-CCcCCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcC-CCC
Confidence 66655444333 23457899999999999999999988888777777544 4556665555554443 5 899
Q ss_pred CEEEEc-------------cCcee-------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 156 DGVVLL-------------FHTTW-------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 156 d~Vlvp-------------~g~~~-------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
|+|++| .|+++ ....+..|+ +.+++.+... .++++++++|+||||||.++|.++++
T Consensus 131 d~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~-~~~~~~~~~~---~~~~~~il~~~P~NPTG~v~s~e~~~ 206 (412)
T d1ajsa_ 131 TPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDL-QGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWK 206 (412)
T ss_dssp SCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECH-HHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred CEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccH-HHHHHHHHhc---cCCcEEEEecCCCCCcCCCCCHHHHH
Confidence 999997 66553 355677888 8888776542 12678888899999999999999999
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchH-HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK-KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
+|+++|++||++||+||+|.++.|+ +....++. .... ....+++++.|+||.+ +++|+|+||+++ +..
T Consensus 207 ~i~~la~~~~~~ii~De~Y~~l~~~-~~~~~~~~~~~~~------~~~~~~~~~~s~sk~~-~~~G~R~G~~~~---~~~ 275 (412)
T d1ajsa_ 207 QIASVMKRRFLFPFFDSAYQGFASG-NLEKDAWAIRYFV------SEGFELFCAQSFSKNF-GLYNERVGNLTV---VAK 275 (412)
T ss_dssp HHHHHHHHHTCEEEEEESCTTTTTS-CHHHHTHHHHHHH------HTTCCEEEEEECTTTS-CCGGGCEEEEEE---ECS
T ss_pred HHHHHHhhCCEEEEecHhhhhhhcC-Ccccchhhhhhhh------hhcccccccccccccc-cCCCCCcccccc---chh
Confidence 9999999999999999999999883 32222221 1112 2234689999999999 999999999996 443
Q ss_pred HHHHHHhh-------h-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C-cc
Q 041151 295 TVDEIYKI-------A-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR--N-VV 363 (463)
Q Consensus 295 ~~~~l~~~-------~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p--g-~~ 363 (463)
.++.+.+. . +...+++.+.|.++..++.+ ...+..+.++++.++++|+++++.+.+.|+++. + +.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~ 351 (412)
T d1ajsa_ 276 EPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSD----PELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWN 351 (412)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCee
Confidence 33333222 1 23467788899888888752 233455666788899999999999999999862 2 56
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMES 442 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~ 442 (463)
++.+++|||+|+.+ +.+++.++++++||++.||+ |||++ .++++++.+.++
T Consensus 352 ~i~~~~G~F~~~~l-----------------s~~~v~~L~~e~gV~~vpg~-----------Ri~~ag~~~~~i~~~a~a 403 (412)
T d1ajsa_ 352 HITDQIGMFSFTGL-----------------NPKQVEYLINQKHIYLLPSG-----------RINMCGLTTKNLDYVATS 403 (412)
T ss_dssp HHHHCCSSEEECCC-----------------CHHHHHHHHHTTCEECCTTS-----------EEEGGGCCTTTHHHHHHH
T ss_pred eecCCCeEEEecCC-----------------CHHHHHHHHHhCCEEEeCCC-----------eEEeccCCHHHHHHHHHH
Confidence 67889999999433 23557788999999999963 99998 788999999999
Q ss_pred HHHHHHHH
Q 041151 443 FKKFNDEF 450 (463)
Q Consensus 443 l~~~l~~~ 450 (463)
|+++++++
T Consensus 404 I~~av~~~ 411 (412)
T d1ajsa_ 404 IHEAVTKI 411 (412)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.1e-42 Score=342.32 Aligned_cols=358 Identities=14% Similarity=0.113 Sum_probs=255.3
Q ss_pred hhhhhhhccchhhhhHHHHHHHHHHhcccceeccCCC---CcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 11 MNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGN---PHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
|.+++.+.++++|..+..++++.+. .+.|||++|. |+. ..|. ++.+.+
T Consensus 1 ~f~~~~~~p~d~i~~~~~~~~~d~~--~~kInL~iG~~~d~~g----------------------~~p~-----~~~V~~ 51 (396)
T d2q7wa1 1 MFENITAAPADPILGLADLFRADER--PGKINLGIGVYKDETG----------------------KTPV-----LTSVKK 51 (396)
T ss_dssp -CTTCCCCCC-------------------CEESSCCSCCCTTS----------------------CCCC-----CHHHHH
T ss_pred CccccccCCCChHHHHHHHHhccCC--CCcEEeeCCCccCCCC----------------------CCCC-----CHHHHH
Confidence 3567778888888887766654332 3469999993 332 1133 678888
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcE--EEcCCcHHHHHHHH--HHHhcCCCCEEEEc--
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELI--FLTDGASKGVMQTL--NCVIRGEGDGVVLL-- 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i--~~t~G~~~al~~~~--~~l~~~~gd~Vlvp-- 161 (463)
++.+.+.+ ...++|++..|+++||+++++|+.++++..+.++.+ ++|.|+..++.+++ ...+ ++||.|++|
T Consensus 52 A~~~~~~~--~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~gd~Vlvp~P 128 (396)
T d2q7wa1 52 AEQYLLEN--ETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN-TSVKRVWVSNP 128 (396)
T ss_dssp HHHHHHHH--CCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-SCCCEEEEEES
T ss_pred HHHHHhhC--CCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhc-ccceEEEEecC
Confidence 88877776 356789999999999999999998887776666643 45666665555444 4445 899999998
Q ss_pred -----------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 -----------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 -----------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|+++ .+.++..+. ..+.+..... .++++++++++||||||.++|.+++++|+++|++|
T Consensus 129 ~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~ 204 (396)
T d2q7wa1 129 SWPNHKSVFNSAGLEVREYAYYDAENHTLDF-DALINSLNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK 204 (396)
T ss_dssp CCTHHHHHHHHTTCEEEEEECEETTTTEECH-HHHHHHHTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHcCCeeEeccccccccccccc-chHHHHHHHh---ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcC
Confidence 67665 455666777 7766654431 23678888899999999999999999999999999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhh-
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIA- 303 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~- 303 (463)
+++||+||+|+.+.|+ +....+......+. ..+++++.|+||.+ +++|+|+||++. +...++.+.+..
T Consensus 205 ~~~ii~De~Y~~l~~~-~~~~~~~~~~~~~~------~~~~~~~~s~sk~~-~~~G~R~G~~~~---~~~~~~~~~~~~~ 273 (396)
T d2q7wa1 205 GWLPLFDFAYQGFARG-LEEDAEGLRAFAAM------HKELIVASSYSKNF-GLYNERVGACTL---VAADSETVDRAFS 273 (396)
T ss_dssp TCEEEEEESCTTSSSC-HHHHTHHHHHHHHH------CSCEEEEEECTTTT-TCGGGCCEEEEE---ECSSHHHHHHHHH
T ss_pred CeEEEEeccccccccC-CccCchHhhhhhhh------cccccccccccccc-cccCCCcccccc---chhHHHHHHHhhh
Confidence 9999999999999883 33333333333332 23678999999999 999999999996 554555443322
Q ss_pred -------hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CcccccCCceeEE
Q 041151 304 -------SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR---NVVCNFTEGAMYS 373 (463)
Q Consensus 304 -------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p---g~~~~~~~g~~~~ 373 (463)
....+++...|.++..++.+ ...+..+.++.+.++++|+++++.+.+.|+++. .+.++.+++|+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~ 349 (396)
T d2q7wa1 274 QMKAAIRANYSNPPAHGASVVATILSN----DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFS 349 (396)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHTS----HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEE
T ss_pred hhhhhhhccccCCCHHHHHHHHHHhcC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceecCCCeEEE
Confidence 23467788888888888763 234445667788899999999999999999861 2566788899999
Q ss_pred eeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 374 FPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
|+.+. .+++.+|++++||.+.||+ |||++ .++++++.+.++|++++
T Consensus 350 ~~~l~-----------------~e~~~~L~~e~gV~~~~g~-----------Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 350 FSGLT-----------------KEQVLRLREEFGVYAVASG-----------RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp ECCCC-----------------HHHHHHHHHHHCEECCTTC-----------EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred eeCCC-----------------HHHHHHHHHhCCEEECCCC-----------EEEecCCCHHHHHHHHHHHHHhC
Confidence 94332 3457888999999998854 99998 78899999999998764
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=2e-41 Score=340.17 Aligned_cols=363 Identities=13% Similarity=0.096 Sum_probs=264.8
Q ss_pred hhhhhhhhccchhhhhHHHHHHHHHHhc-ccceeccCC---CCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHH
Q 041151 10 SMNENVKKVQYAVRGELYLRASELQKEG-KKIIFTNVG---NPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADA 85 (463)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 85 (463)
++..++...++++|..+. ++++++. .++|||++| +|+. ..|. ++.+
T Consensus 3 ~~~~~~~~~~~d~i~~~~---~~~~~d~~~~kInL~iG~~~d~~g----------------------~~~~-----~~~V 52 (412)
T d1yaaa_ 3 TLFNNIELLPPDALFGIK---QRYGQDQRATKVDLGIGAYRDDNG----------------------KPWV-----LPSV 52 (412)
T ss_dssp TTTTTCCCCCCCTTHHHH---HHHHTCCCSSCEECSSCCCBCTTS----------------------CBCC-----CHHH
T ss_pred ChhhcCCcCCCChHHHHH---HHHhcCCCCCcEEeecCCCcCCCC----------------------CCCC-----cHHH
Confidence 677788889999876555 4455443 347999999 3442 1122 5666
Q ss_pred HHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEE--cCCcHHHHHHHH--HHHhcCCCCEEEEc
Q 041151 86 IARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFL--TDGASKGVMQTL--NCVIRGEGDGVVLL 161 (463)
Q Consensus 86 ~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~--t~G~~~al~~~~--~~l~~~~gd~Vlvp 161 (463)
.++.. .+.......++|+|..|.++||+++++++.++++..+..+.+++ +.|+..++..++ ..+. +|||.|++|
T Consensus 53 ~~A~~-~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gd~Vlip 130 (412)
T d1yaaa_ 53 KAAEK-LIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLS 130 (412)
T ss_dssp HHHHH-HHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEE
T ss_pred HHHHH-HHHhCcccCCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhcc-CCCCEEecc
Confidence 66543 43332235678999999999999999999877765555554443 334444444433 3445 899999997
Q ss_pred -------------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 162 -------------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 162 -------------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
.|+++ ....+..+. +.+++.+... .+++++|++++||||||.++|.+++++|+++|+
T Consensus 131 ~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~ 206 (412)
T d1yaaa_ 131 KPTWANHMAIFENQGLKTATYPYWANETKSLDL-NGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIA 206 (412)
T ss_dssp ESCCTTHHHHHHTTTCCEEEEECEETTTTEECH-HHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cccCchhHHHHHHcCCceecccccccccccccc-hhhhcccccC---CCceEEEEecCCCCCccccCCHHHHHHHHhhhc
Confidence 66655 456778888 8888887752 125678888899999999999999999999999
Q ss_pred hCCeEEEecccccccccCCCCCccchH--HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH---
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSK--KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD--- 297 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~--- 297 (463)
+++++||+||+|.++.|+ +....+.. ...... +...++|++.|+||.| +++|+|+||+++ +++.++
T Consensus 207 ~~~~~ii~De~Y~~l~~~-~~~~~~~~~~~~~~~~----~~~~~~i~~~s~SK~~-~~~G~RiG~~~~---~~~~~~~~~ 277 (412)
T d1yaaa_ 207 SKNHIALFDTAYQGFATG-DLDKDAYAVRLGVEKL----STVSPVFVCQSFAKNA-GMYGERVGCFHL---ALTKQAQNK 277 (412)
T ss_dssp HTTCEEEEEESCTTTSSS-CHHHHTHHHHHHHHHT----TTTCCEEEEEECTTTS-CCGGGCEEEEEE---ECCSCTTHH
T ss_pred cCCEEEeecceeeecccC-Ccccchhhhhhhhhcc----ccCCCeEEEEecCCcc-ccCcCceEEEEE---chhhhhhHH
Confidence 999999999999999883 33222221 111122 3445899999999999 999999999996 433222
Q ss_pred ----HH----Hhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CC-cccc
Q 041151 298 ----EI----YKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RN-VVCN 365 (463)
Q Consensus 298 ----~l----~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg-~~~~ 365 (463)
.+ .... ....+++.+.|.++..++.+. ....++.++.+.+++.|+++++.+.+.|+++ ++ |.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~ 353 (412)
T d1yaaa_ 278 TIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETP----ELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI 353 (412)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcee
Confidence 11 1112 245788999999999988632 3345566778889999999999999999886 22 6778
Q ss_pred cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHH
Q 041151 366 FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFK 444 (463)
Q Consensus 366 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~ 444 (463)
.|+||||+|+.+ +.+++.+|++++||.+.||+ |||++ .++++++.+.++|+
T Consensus 354 ~~~gG~F~~~~l-----------------s~e~~~~L~~e~~V~~~~g~-----------Ris~~g~~~~~i~~l~~ai~ 405 (412)
T d1yaaa_ 354 VNQCGMFSFTGL-----------------TPQMVKRLEETHAVYLVASG-----------RASIAGLNQGNVEYVAKAID 405 (412)
T ss_dssp HHCCSSEEECCC-----------------CHHHHHHHHHHHCEECCTTS-----------EEEGGGCCTTTHHHHHHHHH
T ss_pred CCCceEEEecCc-----------------CHHHHHHHHHhCCEEECCCC-----------EEEeccCCHHHHHHHHHHHH
Confidence 899999999433 24568889999999998853 99998 88899999999998
Q ss_pred HHHHH
Q 041151 445 KFNDE 449 (463)
Q Consensus 445 ~~l~~ 449 (463)
++++.
T Consensus 406 ~v~k~ 410 (412)
T d1yaaa_ 406 EVVRF 410 (412)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-42 Score=346.65 Aligned_cols=360 Identities=13% Similarity=0.099 Sum_probs=264.0
Q ss_pred hhhhhhccchhhhhHHHHHHHHHHhc-ccceeccCCC---CcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHH
Q 041151 12 NENVKKVQYAVRGELYLRASELQKEG-KKIIFTNVGN---PHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIA 87 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 87 (463)
.+++...+.++|..+... ++.+. .+.|||++|. |+. ..|. ++.+.+
T Consensus 2 ~~~~~~~~~dpi~~~~~~---~~~d~~~~kInL~iG~~~d~~g----------------------~~p~-----~~~V~~ 51 (397)
T d3tata_ 2 FQKVDAYAGDPILTLMER---FKEDPRSDKVNLSIGLYYNEDG----------------------IIPQ-----LQAVAE 51 (397)
T ss_dssp CCCCCCCCCCTTTTHHHH---HHHSCCSSCEECSCCSCCCTTS----------------------SCCC-----CHHHHH
T ss_pred cccCCCCCCCcHHHHHHH---HhcCCCCCcEEccCCCCcCCCC----------------------CCCC-----cHHHHH
Confidence 345555666666555444 44432 3469999994 332 1132 566766
Q ss_pred HHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHH----HHHHHHHHhcCCCCEEEEc--
Q 041151 88 RAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKG----VMQTLNCVIRGEGDGVVLL-- 161 (463)
Q Consensus 88 a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a----l~~~~~~l~~~~gd~Vlvp-- 161 (463)
+....... ....++|+|..|+++||+++++|+.++++..+++++|+++.|++++ +.+++..++ +|||.|++|
T Consensus 52 A~~~l~~~-~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~-~pgd~Vlv~~P 129 (397)
T d3tata_ 52 AEARLNAQ-PHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FPESGVWVSDP 129 (397)
T ss_dssp HHHHHTTS-CCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHH-CSSCCCEECSS
T ss_pred HHHHHHhC-cccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhc-CCCCcceeccc
Confidence 65544332 2356789999999999999999998888888889999988877764 666666677 899999998
Q ss_pred -----------cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 162 -----------FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 162 -----------~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
+|+++ .+..+..|. +.+.+.+... .++++++++++||||||.++|.+++++|+++|+++
T Consensus 130 ~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~ 205 (397)
T d3tata_ 130 TWENHVAIFAGAGFEVSTYPWYDEATNGVRF-NDLLATLKTL---PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR 205 (397)
T ss_dssp CCTTHHHHHHTTTCCCEECCCCCTTTSSCCH-HHHHHHHTTC---CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHcCCEEEEEecchhhccccch-HHHHHHhhhc---ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhc
Confidence 66665 345567787 7777765531 22678888899999999999999999999999999
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh---
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK--- 301 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~--- 301 (463)
+++||+||+|.++.|+ +....+...... ....++|++.|+||++ +++|+|+||++.+....+...++..
T Consensus 206 ~~~ii~De~Y~~l~~~-~~~~~~~~~~~~------~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~ 277 (397)
T d3tata_ 206 ELIPFLDIAYQGFGAG-MEEDAYAIRAIA------SAGLPALVSNSFSKIF-SLYGERVGGLSVMCEDAEAAGRVLGQLK 277 (397)
T ss_dssp TCCCEECBSCTTSSSC-HHHHHHHHHHHH------TTTCCCEECBCCHHHH-TBTTTCCBCCEEECSSTTHHHHHHHHHH
T ss_pred CeeEEeehhhhhhccC-Ccccchhhhhhh------hcCCceEEEecCcccc-cccCccccccccchhHHHHHHHHHHHHH
Confidence 9999999999999883 222222222222 2334789999999999 9999999999963322222222221
Q ss_pred -hh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C--CcccccCCceeEEeee
Q 041151 302 -IA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC-R--NVVCNFTEGAMYSFPQ 376 (463)
Q Consensus 302 -~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-p--g~~~~~~~g~~~~~~~ 376 (463)
.. ....+++...|.++..++.+ ...+..+.++.+.++++++++++.+.+.|... | +|.+.++++|||+|+
T Consensus 278 ~~~~~~~~~~~~~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~- 352 (397)
T d3tata_ 278 ATVRRNYSSPPNFGAQVVAAVLND----EALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYT- 352 (397)
T ss_dssp HHTTTTTSSCCSHHHHHHHHHHHS----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCC-
T ss_pred HHhhcccccccHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEec-
Confidence 12 23567788899888888753 23455566777888999999999999999875 2 267788999999994
Q ss_pred ccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHH
Q 041151 377 IRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l 447 (463)
+++ .+++.+|++++||.+.||+ |||++ .++++++.+.++|++++
T Consensus 353 -~ls---------------~e~~~~L~~e~~V~l~~g~-----------Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 353 -GLS---------------AAQVDRLREEFGVYLIASG-----------RMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp -CCC---------------HHHHHHHTTTTCEECCSSS-----------CCBTTSCCTTTHHHHHHHHHHHC
T ss_pred -CcC---------------HHHHHHHHHhCCEEeCCCC-----------EEEeccCCHHHHHHHHHHHHHhC
Confidence 332 3457788899999999963 99997 78899999999998763
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-40 Score=325.91 Aligned_cols=284 Identities=15% Similarity=0.266 Sum_probs=224.3
Q ss_pred CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC-EEEEc-------------cCc
Q 041151 99 GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD-GVVLL-------------FHT 164 (463)
Q Consensus 99 ~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd-~Vlvp-------------~g~ 164 (463)
....||++. ..+||+++|++++ +++++|++|+|++++|..++.+++ +||| .|+++ .|.
T Consensus 49 ~l~rYPd~~-~~~Lr~~ia~~~g------v~pe~I~it~Gs~eai~~~~~~~~-~pgd~~Vl~~~P~y~~~~~~~~~~g~ 120 (354)
T d1fg7a_ 49 TLNRYPECQ-PKAVIENYAQYAG------VKPEQVLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGV 120 (354)
T ss_dssp CTTSCCCSS-CHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTC
T ss_pred HHhcCCCCc-HHHHHHHHHHHhC------CChHHeeeccCchHHHHHHHHHhh-ccccccccccccccccchhhhhccCc
Confidence 456797764 5799999999996 899999999999999999999998 9998 57775 566
Q ss_pred ee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccC
Q 041151 165 TW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQ 240 (463)
Q Consensus 165 ~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~ 240 (463)
++ ..++|.+|+ +.++..+. ++++|++|+||||||.+++.++++.+.+.++ ++.++|+||+|.++.+.
T Consensus 121 ~v~~~~~~~~~~~d~-~~l~~~~~-------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~ 191 (354)
T d1fg7a_ 121 ECRTVPTLDNWQLDL-QGISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ 191 (354)
T ss_dssp EEEECCCCTTSCCCH-HHHHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG
T ss_pred eeeccccccccccch-hhhhhccc-------ccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccc
Confidence 65 456789999 99987663 6999999999999999999999999888776 57778888888887552
Q ss_pred CCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHh
Q 041151 241 DERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLM 320 (463)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~ 320 (463)
.. ..... ....++|+++||||.| |++|+|+||++ +++++++.+.+... .+.++.+.|.++..+
T Consensus 192 -~~-~~~~~----------~~~~~~iv~~S~SK~~-~laGlRiGy~i---~~~~~i~~l~~~~~-~~~~~~~~~~~a~~~ 254 (354)
T d1fg7a_ 192 -AS-LAGWL----------AEYPHLAILRTLSKAF-ALAGLRCGFTL---ANEEVINLLMKVIA-PYPLSTPVADIAAQA 254 (354)
T ss_dssp -GC-SGGGT----------TTCTTEEEEEESSSTT-CCGGGCCEEEE---ECHHHHHHHHHHSC-SSCSCHHHHHHHHHH
T ss_pred -cc-cchhh----------cccccceEEeCCcccc-CCCcccccccc---ccchhhhhhhhhcC-ccchhhHHHHHHHHH
Confidence 22 11111 3445789999999999 99999999999 69999999988776 567788888877777
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHH
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCL 400 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (463)
+.. ....+.....+.+.++++.+.+.+.+++++....|.+++|+|++++ ++.++ .
T Consensus 255 ~~~---------~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~~~~f~~~~~~---------------~~~~~-~ 309 (354)
T d1fg7a_ 255 LSP---------QGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK---------------ASSAV-F 309 (354)
T ss_dssp TSH---------HHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET---------------THHHH-H
T ss_pred Hhh---------hccccccccchhhhhHHHHHHHHHHhCCCcceeCCCCceEEEEeCC---------------CHHHH-H
Confidence 541 1223344456678888899999999987777777888899997654 13344 4
Q ss_pred HHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHH
Q 041151 401 RLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFK 444 (463)
Q Consensus 401 ~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~ 444 (463)
+.|.++||+|++++.|... .+|+|||++. ++++++++++|+
T Consensus 310 ~~L~~~gIlvr~~~~~~~~--~~~lRisigt-~ee~~~~l~aLk 350 (354)
T d1fg7a_ 310 KSLWDQGIILRDQNKQPSL--SGCLRITVGT-REESQRVIDALR 350 (354)
T ss_dssp HHHHHTTEECEECTTSTTC--TTEEEEECCC-HHHHHHHHHHHH
T ss_pred HHHHHCCcEEecCCCCCCC--CCEEEEEeCC-HHHHHHHHHHHh
Confidence 5567889999999888643 3599999974 478888888876
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.5e-39 Score=324.57 Aligned_cols=356 Identities=15% Similarity=0.096 Sum_probs=257.1
Q ss_pred hhhhhccchhhhhHHHHHHHHHHhc-ccceeccCCCCcC-CCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHH
Q 041151 13 ENVKKVQYAVRGELYLRASELQKEG-KKIIFTNVGNPHA-LGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAK 90 (463)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~G~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~ 90 (463)
.+++..++++|..++.. ++++. .+.|||++|.+.. -| ..|. ++.+.+++.
T Consensus 3 ~~~~~~~~d~i~~l~~~---~~~d~~~~~InL~iG~~~d~~g--------------------~~~~-----~~~V~~A~~ 54 (394)
T d2ay1a_ 3 GNLKPQAPDKILALMGE---FRADPRQGKIDLGVGVYKDATG--------------------HTPI-----MRAVHAAEQ 54 (394)
T ss_dssp GGCCCCCCCSHHHHHHH---HHHCCCTTCEECCCCSCCCTTS--------------------CCCC-----CHHHHHHHH
T ss_pred CCCCCCCCChHHHHHHH---HhCCCCCCCEEccCCCccCCCC--------------------CCCC-----CHHHHHHHH
Confidence 44556666766655544 44443 3579999995321 01 1122 678888888
Q ss_pred HHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCC-cHHHHHHHHHHHhcCCCCEEEEc--------
Q 041151 91 HYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDG-ASKGVMQTLNCVIRGEGDGVVLL-------- 161 (463)
Q Consensus 91 ~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G-~~~al~~~~~~l~~~~gd~Vlvp-------- 161 (463)
+.+.+. ..++|++..|+++||+++++++.+.++....++.+++++| +..++...+..+. ++||.|++|
T Consensus 55 ~~~~~~--~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~gd~V~~p~p~~~~y~ 131 (394)
T d2ay1a_ 55 RMLETE--TTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA-NPDLRVFVSDPTWPNHV 131 (394)
T ss_dssp HHHHHC--CCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCHHHH
T ss_pred HHhhCC--CCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhhc-CCceEEEEecccccchH
Confidence 777662 4568999999999999999999877666555555554444 3455667777777 899999998
Q ss_pred -----cCcee------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEe
Q 041151 162 -----FHTTW------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLG 230 (463)
Q Consensus 162 -----~g~~~------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~ 230 (463)
+|.++ .+..+..+. +.+++..... .++++++++++||||||.++|.+++++|+++|++++++||+
T Consensus 132 ~~~~~~g~~~v~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~ 207 (394)
T d2ay1a_ 132 SIMNFMGLPVQTYRYFDAETRGVDF-EGMKADLAAA---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLI 207 (394)
T ss_dssp HHHHHHTCCEEEEECEETTTTEECH-HHHHHHHHTC---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHcCCEEEEecccchhcccccc-hhHHHHHhhc---ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEE
Confidence 56655 345666777 7776665532 12467777779999999999999999999999999999999
Q ss_pred cccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh-------h
Q 041151 231 DEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI-------A 303 (463)
Q Consensus 231 Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-------~ 303 (463)
||+|.++.|+ +....++...... ...+++++.|+||.+ +++|+|+||+++ +...++...+. .
T Consensus 208 De~Y~~l~~~-~~~~~~~~~~~~~------~~~~~~~~~s~sk~~-~~~G~R~G~~~~---~~~~~~~~~~~~~~~~~~~ 276 (394)
T d2ay1a_ 208 DLAYQGFGDG-LEEDAAGTRLIAS------RIPEVLIAASCSKNF-GIYRERTGCLLA---LCADAATRELAQGAMAFLN 276 (394)
T ss_dssp EECCTTSSSC-HHHHHHHHHHHHH------HCSSEEEEEECTTTT-TCGGGCEEEEEE---ECSSHHHHHHHHHHHHHHH
T ss_pred eccchhhccc-ccccchhhhhhhh------hcccccccccccccc-cCCcccccchhh---chhHHHHHHHhhhhhHhhh
Confidence 9999999883 3222233222222 223688999999999 899999999996 44444433322 1
Q ss_pred -hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--C-CcccccCCceeEEeeeccC
Q 041151 304 -SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--R-NVVCNFTEGAMYSFPQIRL 379 (463)
Q Consensus 304 -~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--p-g~~~~~~~g~~~~~~~~~~ 379 (463)
....+++...|.++..++.+ ......+.++.+.++++|+++++.+.+.|+++ + .|.+..|+||||+|+.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls- 351 (394)
T d2ay1a_ 277 RQTYSFPPFHGAKIVSTVLTT----PELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT- 351 (394)
T ss_dssp HTTTSSCCCHHHHHHHHHHHS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC-
T ss_pred cccccchhHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceeeECCCceeEEecCcC-
Confidence 13456777888888777653 12334456667789999999999999999875 2 267788999999994332
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKF 446 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~ 446 (463)
.+++.++++++||++.||. |||++ .++++++.+.++|.++
T Consensus 352 ----------------~~~~~~L~~~~~V~~~~g~-----------Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 352 ----------------PEQVKRIKEEFGIYMVGDS-----------RINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp ----------------HHHHHHHHHHHCEECCTTC-----------EEEGGGCCTTTHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHhCCEEecCCC-----------EEEecCCCHHHHHHHHHHHHHh
Confidence 3457888999999999853 99998 8889999999988875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.4e-40 Score=319.62 Aligned_cols=314 Identities=15% Similarity=0.144 Sum_probs=235.5
Q ss_pred hhhHHHHHHHHHHhcccceeccCCCCcCCCCCCcchhhhhhhhhcCCCcCCCCCCCCCCcHHHHHHHHHHhhhcCCCCCc
Q 041151 23 RGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGA 102 (463)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~~~~~~~~~~ 102 (463)
...+.+.+.+++.+++++|+|++|++.+ |. |+.+++++.+.+.. ...+
T Consensus 4 ~~~~~~~~~~~~~~~~d~~~l~~~enp~------------------------~~-----p~~i~~~~~~~~~~---~~~~ 51 (334)
T d2f8ja1 4 LDLIAKRAYPYETEKRDKTYLALNENPF------------------------PF-----PEDLVDEVFRRLNS---DALR 51 (334)
T ss_dssp HHHHHHHSCCCCCCCCCSEECSSCCCSS------------------------CC-----CHHHHHHHHHHCCT---TGGG
T ss_pred HHHHHHhcccccccCCCceEEECCCCCC------------------------CC-----CHHHHHHHHHHhhc---chhc
Confidence 3345566666777889999999997665 44 88999999888876 3344
Q ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---
Q 041151 103 YSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW--- 166 (463)
Q Consensus 103 Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~--- 166 (463)
|.|..|.++||++||+|++.+ + +++++|++|+|++++|..++ ++||+|+++ .|+++
T Consensus 52 ~yp~~g~~~Lr~aia~~~~~~-~--v~~d~I~it~G~~~~l~~l~-----~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v 123 (334)
T d2f8ja1 52 IYYDSPDEELIEKILSYLDTD-F--LSKNNVSVGNGADEIIYVMM-----LMFDRSVFFPPTYSCYRIFAKAVGAKFLEV 123 (334)
T ss_dssp SCCCSSCHHHHHHHHHHHTCS-S--CCGGGEEEEEHHHHHHHHHH-----HHSSEEEECSSCCHHHHHHHHHHTCCEEEC
T ss_pred CCCCCCcHHHHHHHHHHhccc-C--CCcceEEecCcchhHHHHHh-----hhccccccccccccccccchhccCCccccc
Confidence 446679999999999999643 3 68899999999999887653 457889996 66666
Q ss_pred cC-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCc
Q 041151 167 KR-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPF 245 (463)
Q Consensus 167 ~~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~ 245 (463)
+- .++..+- . .. .++++++++|||||||.+++.++++++ .++++++|+||+|.++.+ .. ..
T Consensus 124 ~~~~~~~~~~--~----~~------~~~~~l~l~nP~NPtG~~~s~~~l~~~----~~~~~~ii~Dd~~~~~~~-~~-~~ 185 (334)
T d2f8ja1 124 PLTKDLRIPE--V----NV------GEGDVVFIPNPNNPTGHVFEREEIERI----LKTGAFVALDEAYYEFHG-ES-YV 185 (334)
T ss_dssp CCCTTSCCCC--C----CC------CTTEEEEEESSCTTTCCCCCHHHHHHH----HTTTCEEEEECTTGGGTC-CC-CG
T ss_pred cccccccccc--c----cc------ccceEEEecccccccceeecHHHhhcc----ccceeEEeecccchhhcc-cc-cc
Confidence 21 1111111 0 11 278999999999999999998777664 357999999999987644 11 11
Q ss_pred cchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhhcccCChHHHHHHHHhcCCCC
Q 041151 246 VSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASIALSPNVPAQIFMGLMVNPLK 325 (463)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~l~~~~ 325 (463)
... ...+++|+++||||++ +++|+|+||++ +++++++++.+.+. .++.+.+.|.++.+++.
T Consensus 186 ~~~-----------~~~~~~i~~~S~SK~~-~~~G~R~G~~~---~~~~~i~~l~~~~~-~~~~s~~~~~~a~~~l~--- 246 (334)
T d2f8ja1 186 DFL-----------KKYENLAVIRTFSKAF-SLAAQRVGYVV---ASEKFIDAYNRVRL-PFNVSYVSQMFAKVALD--- 246 (334)
T ss_dssp GGG-----------GTCSSEEEEEESTTTS-SCTTTCEEEEE---ECHHHHHHHHHHSC-TTCSCHHHHHHHHHHHH---
T ss_pred ccc-----------ccCceEEEEecCcccc-chhhhhhhhcc---cchHHHHHHHHhhc-ccccchhhhhhcccccc---
Confidence 111 2334799999999999 89999999999 59999999988876 56789999998888874
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHh
Q 041151 326 PGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEA 405 (463)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 405 (463)
..++.++.++.|+++++.+.+.|+++ |+++.+|+|+ |+|++++ .. +.+.+.+.|.+
T Consensus 247 --------~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~~~--~~------------~~~~~~~~L~~ 302 (334)
T d2f8ja1 247 --------HREIFEERTKFIVEERERMKSALREM-GYRITDSRGN-FVFVFME--KE------------EKERLLEHLRT 302 (334)
T ss_dssp --------THHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCSS-EEEEECC--HH------------HHHHHHHHHHH
T ss_pred --------cccchhhHHHHHHHHHHHHHHHHHHC-CCeECCCCce-EEEEECC--CC------------CHHHHHHHHHH
Confidence 23445567888999999999999998 8999888887 5675443 32 33344556678
Q ss_pred cCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHH
Q 041151 406 TGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKF 446 (463)
Q Consensus 406 ~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~ 446 (463)
+||.|+++ .+|+|||++.+ +|+++++++|+++
T Consensus 303 ~GI~vr~~--------~~~vRis~g~~-ee~~~l~~~l~~f 334 (334)
T d2f8ja1 303 KNVAVRSF--------REGVRITIGKR-EENDMILRELEVF 334 (334)
T ss_dssp TTEECEEE--------TTEEEEECCCH-HHHHHHHHHHHHC
T ss_pred CCCEECCC--------CCeEEEEcCCH-HHHHHHHHHHhcC
Confidence 89999763 24899999854 6788888888753
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=1.1e-37 Score=311.40 Aligned_cols=283 Identities=15% Similarity=0.130 Sum_probs=213.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH--------hcCCCCEEEEc------cCcee-----cCCC
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV--------IRGEGDGVVLL------FHTTW-----KRQQ 170 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--------~~~~gd~Vlvp------~g~~~-----~~~~ 170 (463)
++|+++|++++....+..++...|++|+|++|+|..++.+| + +|||+|+++ +.... ....
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~-~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~ 181 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPD-APESKVVAHAPFYPVFREQTKYFDKKGYV 181 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTT-SCCEEEEECSSCCHHHHHHHHHSCBTTEE
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccC-CCCCEEEEecCccccHHHHHHHcCCCCCc
Confidence 79999999998766555555557999999999999999999 4 689999997 21111 4556
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
|.+|. +.+++.+++ +++++++||||||||.+.. +..+++.+|+||+|.+..|. ++.
T Consensus 182 ~~~D~-~~~~~~~~~------~~~ii~l~sPnNPtG~l~~----------~v~~~~~~I~DEaY~~~~f~------~~~- 237 (425)
T d2hoxa1 182 WAGNA-ANYVNVSNP------EQYIEMVTSPNNPEGLLRH----------AVIKGCKSIYDMVYYWPHYT------PIK- 237 (425)
T ss_dssp EEEEG-GGGTTCSCG------GGEEEEEESSCTTTCCCCC----------CSSTTCEEEEECTTCSTTTS------CCC-
T ss_pred cCCCH-HHHHhhCCC------CceEEEEECCCCCCcchhh----------hhhhCCEEEEeccccCcccc------chh-
Confidence 88898 888887776 8999999999999998732 33568999999999765442 111
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
...+++|++.||||+| |++|||+||+++ .++.+++++.++.. ..++++.+.|.++..+|+... .
T Consensus 238 ---------~~~~~~Ivl~S~SK~f-glaGlRiGw~i~--~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~---~ 302 (425)
T d2hoxa1 238 ---------YKADEDILLFTMSKFT-GHSGSRFGWALI--KDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVV---A 302 (425)
T ss_dssp ---------SCBCCSEEEEEHHHHT-SCGGGCCEEEEE--CCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH---H
T ss_pred ---------hhcCCeEEEEeCHHhc-cCcchheeeEEe--CCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccH---H
Confidence 2223679999999999 999999999876 67888899988876 678999999999988874210 0
Q ss_pred hHHH----HHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc--------------cCCceeEEeeeccCChhhHHHHhhcC
Q 041151 330 SYEQ----FVRESKGILESLRRRARMMTDGFNSCRNVVCN--------------FTEGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 330 ~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~--------------~~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
.+.. ..+..+..++.++++++.+.+.|.+.+++.+. .+..+.|+|+++...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~----------- 371 (425)
T d2hoxa1 303 MVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----------- 371 (425)
T ss_dssp HHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC-----------
Confidence 0000 01123456778899999999999876433322 223344667555421
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcHHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDMPAIMESFKKFND 448 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i~~~~~~l~~~l~ 448 (463)
+.+++.++|+++||.++||+.||. +.+|+|||+..++|++++++++|+++++
T Consensus 372 ---~~~~~~~lL~e~gI~v~pGs~FG~--~~~yvRisl~~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 372 ---EDKDCYQTFQNGRINTQNGVGFEA--SSRYVRLSLIKTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp ---GGCSHHHHHHHTTEECEEGGGGTS--CTTEEEEECSSCHHHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHhCCEEEEechhcCC--CCCEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 233467889999999999999985 3469999999888999999999999885
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.94 E-value=5.1e-27 Score=230.84 Aligned_cols=289 Identities=10% Similarity=0.079 Sum_probs=188.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCceecCCCc
Q 041151 106 SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHTTWKRQQI 171 (463)
Q Consensus 106 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~~~~~~~~ 171 (463)
..+..++++..+++++. ...+++++|+|+++++..++.++. ++++.|+++ .|+++. .
T Consensus 49 ~~~~~~l~~~~~~~~~~-----~~~e~~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~~~~~~~~~~~l~g~~~v---~ 119 (366)
T d2aeua1 49 SYFAEKVNEYGLKHLGG-----DENDKCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIERSCKIVNAKYF---E 119 (366)
T ss_dssp HHHHHHHHHHHHHHHTC-----CTTEEEEEESSHHHHHHHHHHHHC-CSEEEEECSSSSCCTHHHHHHHHTTCEEE---E
T ss_pred hhhHHHHHHHHHHHccC-----CCccEEEEeCCHHHHHHHHHHHhC-CCCEEEEecCCCcchhHHHHHHhcCCeEE---C
Confidence 34567888888888751 245699999999999999999985 444444544 333331 1
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
.-|+ ++|++++++ ++|+|++++|+||+ +++.+++++|+++|++||+++|+||+|+.+.|. .....+....
T Consensus 120 ~~d~-e~l~~~i~~------~tk~i~~~~p~n~~--~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~-~~~~~~~~~~ 189 (366)
T d2aeua1 120 SDKV-GEILNKIDK------DTLVIITGSTMDLK--VIELENFKKVINTAKNKEAIVFVDDASGARVRL-LFNQPPALKL 189 (366)
T ss_dssp ESCH-HHHHTTCCT------TEEEEEECBCTTSC--BCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHH-HTTCCCHHHH
T ss_pred CCCH-HHHHHhcCC------CceEEEEEecCCCC--cCCHHHHHHHHHHhccCcEEEEEecCccccccc-cccCCCHhhc
Confidence 1267 999999887 89999999999985 467889999999999999999999999987663 2222232221
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCch
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDIS 330 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~ 330 (463)
+. .+++.|+||++ +|+|+||++ +++++++.+..... ..++++++.|.++...|+...
T Consensus 190 --------~~---di~~~S~sK~~---~g~~~G~i~---~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~----- 247 (366)
T d2aeua1 190 --------GA---DLVVTSTDKLM---EGPRGGLLA---GKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFN----- 247 (366)
T ss_dssp --------TC---SEEEEETTSSS---SSCSCEEEE---EEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCC-----
T ss_pred --------Cc---eEEEecccccc---cccceeEEE---ecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcc-----
Confidence 22 37889999977 589999999 69999999988875 567778888888877764211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc--cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCe
Q 041151 331 YEQFVRESKGILESLRRRARMMTDGFNSCRNVV--CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGI 408 (463)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI 408 (463)
..+..++.+..+.......+.+.......++.. ...+.+.+++|......... . ..++.+++..+++++||
T Consensus 248 ~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~a~~Ll~~~gV 320 (366)
T d2aeua1 248 LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI-N------IKKLIEIGFNLLKNYGI 320 (366)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH-H------HHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceee-c------ccCHHHHHHHHHHhCCE
Confidence 111111111111111112223333333333322 23345666776544321110 0 01256788899999999
Q ss_pred EeeCCCCCCCCCCCcEEEEEec-CCcCc--HHHHHHHHH
Q 041151 409 STVPGSGFGQKEGIFHLRTTIL-PAEED--MPAIMESFK 444 (463)
Q Consensus 409 ~v~pg~~f~~~~~~~~lRis~~-~~~e~--i~~~~~~l~ 444 (463)
.+.||..|.. +.+++|||++ .+.++ .+.+++.+.
T Consensus 321 ~~ip~~~~p~--~~~~lRis~~~~~~~~i~~d~l~~ai~ 357 (366)
T d2aeua1 321 ITITVAGMPG--ASKSLRIDLTSRDAERIDDNYIIKAIV 357 (366)
T ss_dssp ECSTTSSSCS--SCCSEEEETTSGGGGGSCHHHHHHHHH
T ss_pred EEEECCCCCC--CCCEEEEeccccchhhCCHHHHHHHHH
Confidence 9999988843 5568999999 33333 344444443
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.8e-22 Score=198.56 Aligned_cols=316 Identities=14% Similarity=0.128 Sum_probs=213.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCcc----CCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGLGAY----SDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y----~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
++.+++++.+++.+++...... +...-+.+|.+.+|+|++ .+.++++++++++...++.++. +++|.
T Consensus 61 hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g--------~e~al~~~SG~~An~~~i~~l~-~~~d~ 131 (401)
T d1fc4a_ 61 HPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG--------MEDAILYSSCFDANGGLFETLL-GAEDA 131 (401)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHTTHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhc--------CCceEEecchhhhhHHHHHHhc-CCCcE
Confidence 7889999999988753211111 122234578888888874 5789999999999999999998 89999
Q ss_pred EEEc--------cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 158 VVLL--------FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 158 Vlvp--------~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
|+++ .|... . ...-..|. +.+++.++.....+....+|++..-.+..|.+.+ +.+|.++|++||
T Consensus 132 i~~d~~~h~s~~~G~~~~~a~~~~~~~~d~-~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~---L~~l~~L~~~~~ 207 (401)
T d1fc4a_ 132 IISDALNHASIIDGVRLCKAKRYRYANNDM-QELEARLKEAREAGARHVLIATDGVFSMDGVIAN---LKGVCDLADKYD 207 (401)
T ss_dssp EEEETTCCHHHHHHHHTSCSEEEEECTTCH-HHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC---HHHHHHHHHHTT
T ss_pred EEeCCcchHHHHccccccCceEEEEcCCCh-HHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh---hhHHHHHHhhcC
Confidence 9997 22222 0 01112366 7888877766554445566666677777888877 777777888999
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS- 304 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~- 304 (463)
+++|+||+|+.+.++. ... ..... ++. .. ...|+++|+||.+ | |...|++. ++.++++.+.....
T Consensus 208 a~LivDeah~~g~~g~-~G~-G~~~~---~~~--~~-~~dii~~tl~Ka~-g--g~~Gg~v~---g~~~~~~~l~~~~~~ 273 (401)
T d1fc4a_ 208 ALVMVDDSHAVGFVGE-NGR-GSHEY---CDV--MG-RVDIITGTLGKAL-G--GASGGYTA---ARKEVVEWLRQRSRP 273 (401)
T ss_dssp EEEEEECTTTTTTSST-TSC-CHHHH---TTC--TT-CCSEEEEESSSTT-C--SSSCEEEE---ECHHHHHHHHHHCHH
T ss_pred cEEEehhhhccccccC-CCC-ccchh---ccC--CC-CCeEEEeeccccc-c--cCCccccc---CCHHHHHHHHcCChh
Confidence 9999999999988742 221 22222 111 11 2358899999988 3 55568888 79999998876543
Q ss_pred --hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCChh
Q 041151 305 --IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPK 382 (463)
Q Consensus 305 --~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~ 382 (463)
.+...++....++...+ +...+.++++++++++.+++.+.+... |+.+..++++.... .+.-+..
T Consensus 274 ~~~s~~l~p~~~~aa~~~l-----------~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~~pIv~v-~~~~~~~ 340 (401)
T d1fc4a_ 274 YLFSNSLAPAIVAASIKVL-----------EMVEAGSELRDRLWANARQFREQMSAA-GFTLAGADHAIIPV-MLGDAVV 340 (401)
T ss_dssp HHHSCCCCHHHHHHHHHHH-----------HHHHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCCSSSSEEEE-EEECHHH
T ss_pred hhhcCCCCHHHHHHHHhhh-----------cccccCHHHHHHHHHHHHHHHhhhccc-CCccCCCCCCEEEE-EECCHHH
Confidence 22333333333333333 233344667889999999999999987 77766655554321 1321111
Q ss_pred hHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 383 AIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
... +.+.|.++||++.+-.....+.+...+|+++. ++++||+++++.|+++.+++
T Consensus 341 ------------a~~-~~~~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~l 397 (401)
T d1fc4a_ 341 ------------AQK-FARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp ------------HHH-HHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ------------HHH-HHHHHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 223 34556788999987554455556678999998 89999999999999987764
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.90 E-value=8.5e-22 Score=193.37 Aligned_cols=312 Identities=15% Similarity=0.092 Sum_probs=206.9
Q ss_pred cHHHHHHHHHHhhhcCCCC----CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-cCCCC
Q 041151 82 PADAIARAKHYLSLTSGGL----GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-RGEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~----~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-~~~gd 156 (463)
.+.+++++.+++..++... ..++...-+.+|++++|+|++ .+..++.+++..+...++.++. ..++|
T Consensus 61 ~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g--------~e~all~~sG~~An~~~i~~l~~~~~~d 132 (396)
T d2bwna1 61 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ--------KEAALVFSSAYNANDATLSTLRVLFPGL 132 (396)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC--------CCceeeeecchHHHHHHHHHHhcccCCC
Confidence 7899999999998864222 122222223577777887764 5778888888889999998874 16889
Q ss_pred EEEEc--------cCcee---cCCCccc-ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhC
Q 041151 157 GVVLL--------FHTTW---KRQQIGV-LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQE 224 (463)
Q Consensus 157 ~Vlvp--------~g~~~---~~~~~~~-d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~ 224 (463)
.|+.+ .|.+. ....+.. |. +.+++.++...+ .+.+.|++..-.+.+|.+.+ +.+|+++|++|
T Consensus 133 ~i~~D~~~Hasi~~g~~ls~a~~~~f~Hnd~-~~l~~l~~~~~~--~~~~~iv~egvySmdGd~ap---l~~l~~L~~~y 206 (396)
T d2bwna1 133 IIYSDSLNHASMIEGIKRNAGPKRIFRHNDV-AHLRELIAADDP--AAPKLIAFESVYSMDGDFGP---IKEICDIAEEF 206 (396)
T ss_dssp EEEEETTCCHHHHHHHHHSCCCEEEECTTCH-HHHHHHHHHSCT--TSCEEEEEESBCTTTCCBCC---HHHHHHHHHHH
T ss_pred ceeehhhhhhccchhhhccccCceEeecchH-HHhhhHHhhhcc--cCceeEEEEeeccCcccccc---cHhHHHHhhhh
Confidence 88887 22222 1111122 44 777777664321 24567777788999999999 67777788899
Q ss_pred CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh
Q 041151 225 NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS 304 (463)
Q Consensus 225 ~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~ 304 (463)
++++++||+|+...++ +... .... .++. . ....|+++||||+| |..| |+++ +++++++.+.....
T Consensus 207 ~~~L~vDeAHs~Gv~G-~~G~-G~~~---~~~~--~-~~~di~~gTlsKa~-g~~G---g~v~---~~~~~i~~l~~~~~ 271 (396)
T d2bwna1 207 GALTYIDEVHAVGMYG-PRGA-GVAE---RDGL--M-HRIDIFNGTLAKAY-GVFG---GYIA---ASARMVDAVRSYAP 271 (396)
T ss_dssp TCEEEEECTTTTTTSS-TTSC-CHHH---HHTC--G-GGCSEEEEESSSTT-CSCC---EEEE---ECHHHHHHHHHHCH
T ss_pred cceeeeccceeeeeec-cccc-cchh---hcCC--c-eeeeeeeecccccc-cccc---cccc---hhHHHHHHHHhhcc
Confidence 9999999999998884 2222 2222 1211 1 12458999999999 6555 8887 69999999987754
Q ss_pred -h-cccCChHHHHHHH-HhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCC
Q 041151 305 -I-ALSPNVPAQIFMG-LMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLP 380 (463)
Q Consensus 305 -~-~~~~~~~~q~~~~-~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~ 380 (463)
. ..++.++.+.++. +.++ -.. .+.++.+..++.+.+++.+.|... |+.+...++.... +.+.-+
T Consensus 272 ~~ifStalpp~~~aa~~~al~----------i~~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~spIvp-v~ig~~ 339 (396)
T d2bwna1 272 GFIFSTSLPPAIAAGAQASIA----------FLKTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSHIVP-VVIGDP 339 (396)
T ss_dssp HHHTSBCCCHHHHHHHHHHHH----------HHTSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSCEE-EECCCH
T ss_pred hhhhcccCcHHHHHHHHHHHH----------HhhcchHHHHHHHHHHHHHHHHHHHHhc-CCCcCCCCCCEEE-EEeCCH
Confidence 2 2333334443332 2221 111 223456777888889999999887 7776654444332 223322
Q ss_pred hhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 381 PKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
.. ...+...+|+++||.+.+.....++.+...+||++. ++.+||++++++|+++
T Consensus 340 ~~------------~~~~a~~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 340 VH------------TKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp HH------------HHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred HH------------HHHHHHHHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 21 345556678889999988666666667778999999 8999999999999864
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.89 E-value=3.2e-23 Score=204.48 Aligned_cols=299 Identities=18% Similarity=0.185 Sum_probs=191.3
Q ss_pred cHHHHHHHHHHhhhcCC-CCCccCCCCC----CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCC
Q 041151 82 PADAIARAKHYLSLTSG-GLGAYSDSRG----IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGD 156 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~-~~~~Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd 156 (463)
|..+++++.+.+..... ....|..... ..++|+.+|++++ +++++|++|+|+++++..++.++..++||
T Consensus 20 p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~------~~~~~i~~~~g~t~a~~~~~~~l~~~~g~ 93 (381)
T d1elua_ 20 PTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN------VDPNTITITDNVTTGCDIVLWGLDWHQGD 93 (381)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT------SCGGGEEEESSHHHHHHHHHHHSCCCTTC
T ss_pred CHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhC------CCcccEEEECChHHHhhhcchhhhhcCCc
Confidence 78889988776653210 1111221111 2357777888876 77889999999999999999998437999
Q ss_pred EEEEc-----------------cCcee---cCC--CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 157 GVVLL-----------------FHTTW---KRQ--QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 157 ~Vlvp-----------------~g~~~---~~~--~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
+|+++ .|+++ +.+ ....+..+.+++.+++ +++++++++++||||.+.+.+++
T Consensus 94 ~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~------~t~~v~i~~~~n~tG~~~~~~~I 167 (381)
T d1elua_ 94 EILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP------KTRLVILSHLLWNTGQVLPLAEI 167 (381)
T ss_dssp EEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCCHHHH
T ss_pred eEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcc------cccccccccccccccccchhhHH
Confidence 99997 45555 221 2222221555555555 89999999999999999996555
Q ss_pred HHHHHHhhh----CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 215 REILRFCYQ----ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 215 ~~l~~~a~~----~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
.++|++ +++++++|.+++.... +..+. ..+..+++.|++|++.+..| +|++++
T Consensus 168 ---~~l~~~~~~~~~~~~~vD~~~~~g~~-----~~~~~-----------~~~~D~~~~s~~K~~~~p~G--~g~l~~-- 224 (381)
T d1elua_ 168 ---MAVCRRHQGNYPVRVLVDGAQSAGSL-----PLDFS-----------RLEVDYYAFTGHKWFAGPAG--VGGLYI-- 224 (381)
T ss_dssp ---HHHHHHCCSSSCCEEEEECTTTBTTB-----CCCTT-----------TSCCSEEEEESSSTTCCCTT--CEEEEE--
T ss_pred ---HHHHhhcccccccccccccccccccc-----ccccc-----------ccccccccccccccccccch--hhHHHh--
Confidence 555555 4799999999986432 12221 11234788999999844445 677775
Q ss_pred CChhHHHHHHhhh----------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHH
Q 041151 291 IPPKTVDEIYKIA----------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESL 345 (463)
Q Consensus 291 ~~~~~~~~l~~~~----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~ 345 (463)
+++..+.+.... . ...+.+.....++.++++ ..... .+...++.
T Consensus 225 -~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~----------~~~~~g~~~~~~~~~ 293 (381)
T d1elua_ 225 -HGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQ----------LHQRQGTAEERYQAI 293 (381)
T ss_dssp -CTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHH----------HHHHHCCHHHHHHHH
T ss_pred -hHHHHHhcCcccccccccccccccccccccccccccccccccchhhhhhhhhhh----------hHHHhcccccchhhh
Confidence 555554432110 0 012334444444444432 11111 23445677
Q ss_pred HHHHHHHHHHhhcCCCccccc---CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 041151 346 RRRARMMTDGFNSCRNVVCNF---TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422 (463)
Q Consensus 346 ~~~~~~l~~~L~~~pg~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 422 (463)
.++++++.+.|+++||+.+.. +.++++.+ .+.-+ ...+.+.+.|+++||.++. ++ ..
T Consensus 294 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~vsf-~~~~~-------------~~~~~i~~~L~~~gi~v~~---~~---~~ 353 (381)
T d1elua_ 294 CQRSEFLWRGLNQLPHVHCLATSAPQAGLVSF-TVDSP-------------LGHRAIVQKLEEQRIYLRT---IA---DP 353 (381)
T ss_dssp HHHHHHHHHHHHHSTTEEESCSSCCSSSEEEE-EECSS-------------SCHHHHHHHHHHTTEECEE---ET---TT
T ss_pred hhHHHHHHHHHhcCCCeEecCCCCccccEEEE-EcCCC-------------CCHHHHHHHHHhCCcEEEe---cC---CC
Confidence 888899999999998987763 35554433 23311 1334456778899998865 22 23
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
+++|+|++ ++.+|+++++++|+++
T Consensus 354 ~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 354 DCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 48999998 6889999999999864
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=3.6e-22 Score=195.23 Aligned_cols=283 Identities=14% Similarity=0.177 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-------------cCcee---c---CCC
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-------------FHTTW---K---RQQ 170 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-------------~g~~~---~---~~~ 170 (463)
..+++.+|+|++ .|++++|+|+++|+..++.+++ +|||.|+++ .|.++ + ...
T Consensus 50 ~~~~~~~A~~~g--------~e~~~~t~g~t~a~~~~~~al~-~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~ 120 (364)
T d2e7ja1 50 DFIHNQLPKFLG--------CDVARVTNGAREAKFAVMHSLA-KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD 120 (364)
T ss_dssp HHHHTHHHHHTT--------SSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTT
T ss_pred HHHHHHHHHHhC--------cCEEEEECcHHHHHHHHHHHHh-CCCcEEEeecccccccchHHHhccceEEEeeeccccc
Confidence 456777777764 5789999999999999999998 999999998 55555 2 235
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
+.+|+ +.+++.+++..+. .++++|++++|+||||.+.+ +++|+++|++||+++++|++|+...+ +.+...
T Consensus 121 ~~i~~-~~l~~~i~~~~k~-~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~-----~~~~~~ 190 (364)
T d2e7ja1 121 YAITP-ENFAQTIEETKKR-GEVVLALITYPDGNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRM-----PVSLKE 190 (364)
T ss_dssp CCCCH-HHHHHHHHHHTTT-SCEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTB-----CCCHHH
T ss_pred cccCH-HHHHhhhhhhccc-CCceEEEeecCCCCCceeec---chhheeccccccchhhccccchhhhh-----hhcccc
Confidence 77999 9999999874222 24678889999999999988 67888899999999999999986433 224433
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-h--------cccCChHHHHHHHHhc
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-I--------ALSPNVPAQIFMGLMV 321 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~--------~~~~~~~~q~~~~~~l 321 (463)
+ . ..++++|+||++ +.+| ++||++. ++++++.+.+... . ..........++.+.+
T Consensus 191 ~--------g---~D~~~~S~~K~~-~~~g-~~g~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 254 (364)
T d2e7ja1 191 I--------G---ADFIVGSGHKSM-AASG-PIGVMGM---KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASF 254 (364)
T ss_dssp H--------T---CSEEEEEHHHHS-SCCS-SCEEEEE---CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHH
T ss_pred c--------c---cceeeecccccc-CCCC-CEEEEEE---CHHHHHHHHhhccccCcccccccccccchhHHHHHHHHH
Confidence 3 2 237889999999 7666 7999994 7777665543221 0 1111222222332222
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc--CCceeEEeeeccCChhhHHHHhhcCCCChHHHH
Q 041151 322 NPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF--TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYC 399 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (463)
. ...+..+...+. .++++.+.+.|+++ |+.... +......+... +.. .+..... .....+.
T Consensus 255 ~----------~~~~~~~~~~~~-~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~--~~~~~~~ 317 (364)
T d2e7ja1 255 P----------HVRERIKRWDEE-VEKARRFAAEMEKL-GIKQLGDNPHNHDLMFFHA--EVL-YEISKKA--KGGRFFL 317 (364)
T ss_dssp H----------HHHHHGGGHHHH-HHHHHHHHHHHHHT-TCEEESSSSCCSSEEEEEC--HHH-HHHHHHS--SSGGGHH
T ss_pred H----------HHHHHHHHHHHH-HHHHHHHHHHHHHc-CCeecCCCCCCcceEEEec--cch-HHHHHHh--hccchHH
Confidence 1 112222222222 34566777888877 555432 22222233212 111 0111111 1122334
Q ss_pred HHHHHhcCeEeeCCCCCCCCCCCcEEEEEec-CCcCcHHHHHHHHHHHHHHH
Q 041151 400 LRLLEATGISTVPGSGFGQKEGIFHLRTTIL-PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 400 ~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~-~~~e~i~~~~~~l~~~l~~~ 450 (463)
...+...|+.... .+. ...+|++.. .+++++++++++|+++++++
T Consensus 318 ~~~l~~~~~~~~~---~g~---~~~~~~~~~~~t~edid~~~~~l~ei~~~y 363 (364)
T d2e7ja1 318 YRELKSRKIHGIK---PGL---TRYFKLSTYGLSDEEVDYVLNAFKEIIEKY 363 (364)
T ss_dssp HHHHHHTTEECSC---TTC---CSEEEEECTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCceec---CCC---cceEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence 4566777775432 221 225677654 78899999999999888763
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=8.3e-22 Score=194.99 Aligned_cols=303 Identities=15% Similarity=0.160 Sum_probs=197.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC--CC----------CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHH
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS--RG----------IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNC 149 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~--~g----------~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~ 149 (463)
++.+++++.+.+... ..|+.+ .. +.++|+.+|++++ +++++|++|+|+++++..++.+
T Consensus 15 ~~~v~ea~~~~~~~~----~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg------~~~~~I~~~~~~t~~l~~~~~~ 84 (391)
T d1p3wa_ 15 DPRVAEKMMQFMTMD----GTFGNPASRSHRFGWQAEEAVDIARNQIADLVG------ADPREIVFTSGATESDNLAIKG 84 (391)
T ss_dssp CHHHHHHHHTTTSTT----SCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc----cccCCCchhhhHHHHHHHHHHHHHHHHHHHHcC------CCCCcEEEECCHHHHHHHHHhh
Confidence 889999998877642 233322 11 2367888999987 7889999999999999988876
Q ss_pred Hh---cCCCCEEEEc----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc
Q 041151 150 VI---RGEGDGVVLL----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG 206 (463)
Q Consensus 150 l~---~~~gd~Vlvp----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG 206 (463)
+. .++||+|+++ .|+++ ....+.+|+ +.+++++++ +|++|++++++||||
T Consensus 85 ~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~-~~~~~~i~~------~T~lv~is~~~n~tG 157 (391)
T d1p3wa_ 85 AANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDL-KELEAAMRD------DTILVSIMHVNNEIG 157 (391)
T ss_dssp HHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCH-HHHHHHCCT------TEEEEECCSBCTTTC
T ss_pred hhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcH-HHHHHhCCC------CcEEEEEECCCCCCe
Confidence 53 1699999996 36666 345677899 999999987 899999999999999
Q ss_pred cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 207 ~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
.+++ +++|+++|+++|+++++|.+|+.... +.++.. .+..+++.|.+|++ |.+| +|++
T Consensus 158 ~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~-----~~d~~~-----------~~~D~~~~s~~k~~-g~~g--~g~~ 215 (391)
T d1p3wa_ 158 VVQD---IAAIGEMCRARGIIYHVDATQSVGKL-----PIDLSQ-----------LKVDLMSFSGHKIY-GPKG--IGAL 215 (391)
T ss_dssp CBCC---HHHHHHHHHHHTCEEEEECTTTBTTB-----CCCTTT-----------SCCSEEEEESTTTT-SCSS--CEEE
T ss_pred eECC---HHHHHHHhccCCcEEEEeeccccCCc-----cccchh-----------cccccccccccccc-CCCc--eEEE
Confidence 9999 56788889999999999999986433 122211 11236788999988 7777 5777
Q ss_pred EecCCChhHHHHHHhhh-------hh-cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 041151 287 EMTNIPPKTVDEIYKIA-------SI-ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNS 358 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~-------~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 358 (463)
++ +++....+.... .. ....+.....++...+ ...........+++++.++.+.+.|..
T Consensus 216 ~~---~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~L~~ 282 (391)
T d1p3wa_ 216 YV---RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAY----------RIAKEEMATEMERLRGLRNRLWNGIKD 282 (391)
T ss_dssp EE---CBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EE---ecchhcccCCcccCCccccCcccCcchhhhhhhhhhhh----------hHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 65 444333322111 11 1222222333333332 122233334456677778888888888
Q ss_pred CCCccccc--CCc-eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC---------------
Q 041151 359 CRNVVCNF--TEG-AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE--------------- 420 (463)
Q Consensus 359 ~pg~~~~~--~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~--------------- 420 (463)
+++..+.. +.. ...+.+.++.. +...+. ..| .++.++.|..|....
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~l--~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~ 346 (391)
T d1p3wa_ 283 IEEVYLNGDLEHGAPNILNVSFNYV-------------EGESLI-MAL--KDLAVSSGSACTSASLEPSYVLRALGLNDE 346 (391)
T ss_dssp STTEEECSCTTTSCTTEEEEEETTS-------------CHHHHH-HHT--TTEECBCCCC------CCCHHHHHHTCCHH
T ss_pred hcCeeecccccccCceEEEEEeCCC-------------ChHHHH-HHh--CCCEEEccccccCCccchhHHHHHcCCCcc
Confidence 75544322 221 12222112211 133332 333 578888776653211
Q ss_pred -CCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 421 -GIFHLRTTIL--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 421 -~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
..++||||++ ++++|++.+++.|+++++++++
T Consensus 347 ~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 347 LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0247999999 7899999999999999999865
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.8e-21 Score=191.56 Aligned_cols=307 Identities=14% Similarity=0.058 Sum_probs=206.1
Q ss_pred cHHHHHHHHHHhhhcCCCC----CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE
Q 041151 82 PADAIARAKHYLSLTSGGL----GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG 157 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~----~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~ 157 (463)
.+.+++++.+++.+++... ..++...-+.+|++.+|+|++ .+..++.++++.+...++.++. .++|.
T Consensus 54 ~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g--------~e~al~~~SG~~an~~~i~al~-~~~d~ 124 (383)
T d1bs0a_ 54 HPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG--------YSRALLFISGFAANQAVIAAMM-AKEDR 124 (383)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHC-CTTCE
T ss_pred CHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcC--------CCceEEecccchhhHHHHHhhc-CCCce
Confidence 7789999999998864211 222223334678888888874 5788888888999999999998 89999
Q ss_pred EEEc--------cCcee---cCCCcc-cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCC
Q 041151 158 VVLL--------FHTTW---KRQQIG-VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQEN 225 (463)
Q Consensus 158 Vlvp--------~g~~~---~~~~~~-~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~ 225 (463)
|+++ .|.+. ....+. -|. +.|++.+... .++.++|+++..++++|.+.+ +.+|.++|++||
T Consensus 125 v~~d~~~h~si~~g~~~~~~~~~~~~hnd~-~~le~~l~~~---~~~~~~vv~e~v~s~~G~i~p---l~~l~~l~~~~~ 197 (383)
T d1bs0a_ 125 IAADRLSHASLLEAASLSPSQLRRFAHNDV-THLARLLASP---CPGQQMVVTEGVFSMDGDSAP---LAEIQQVTQQHN 197 (383)
T ss_dssp EEEETTCCHHHHHHHHTSSSEEEEECTTCH-HHHHHHHHSC---CSSCEEEEEESBCTTTCCBCC---HHHHHHHHHHTT
T ss_pred EEeeccccHHHhhccccCCCcceEecchHH-HHHHHHhccc---CCCceEEEecCCCCCCCcccc---hhHHHHHHHhcC
Confidence 9998 22211 111111 356 8898888652 224677777899999999998 566677788999
Q ss_pred eEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-
Q 041151 226 LVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS- 304 (463)
Q Consensus 226 ~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~- 304 (463)
+++++||+|+...++. ... .... .+ . ....+++.|+||.+ |.+| |++. ++.++++.++....
T Consensus 198 ~~livDeah~~gv~G~-~g~-G~~~---~~----~-~~~~~~~~t~~ka~-g~~G---g~v~---~~~~~~~~l~~~~~~ 260 (383)
T d1bs0a_ 198 GWLMVDDAHGTGVIGE-QGR-GSCW---LQ----K-VKPELLVVTFGKGF-GVSG---AAVL---CSSTVADYLLQFARH 260 (383)
T ss_dssp CEEEEECTTTTTTSSG-GGC-CHHH---HT----T-CCCSEEEEESSSTT-SSCC---EEEE---ECHHHHHHHHHHCHH
T ss_pred cEEEeecceeeeecCC-ccc-chHH---Hc----C-Cccccccccccccc-cccc---cccc---cchhHHHHHHhhchh
Confidence 9999999999887732 211 2222 22 1 12346778999998 6555 8887 58889998877653
Q ss_pred -hcccCChHHHHH-HHHhcCCCCCCCchHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCCh
Q 041151 305 -IALSPNVPAQIF-MGLMVNPLKPGDISYEQFV-RESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP 381 (463)
Q Consensus 305 -~~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~ 381 (463)
...++.++.+.+ +.+.++ ... ...+..+.++.++..++.+.|.+. |+.+....+.+. .+.+.-+.
T Consensus 261 ~~~s~~~~p~~~aa~~~a~~----------~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~s~Ii-~v~~g~~~ 328 (383)
T d1bs0a_ 261 LIYSTSMPPAQAQALRASLA----------VIRSDEGDARREKLAALITRFRAGVQDL-PFTLADSCSAIQ-PLIVGDNS 328 (383)
T ss_dssp HHSSBCCCHHHHHHHHHHHH----------HHHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSCCSSBC-CEEEESHH
T ss_pred hhhcccccchHHHHHHHHHH----------HHHhhhhHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCEE-EEEECCHH
Confidence 223333333333 223321 111 123457778889999999999988 776655544432 22233211
Q ss_pred hhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 382 KAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
....+.+.|.++||++.+.....++.++..+||++. ++++||+++++.|..+
T Consensus 329 -------------~a~~~~~~L~~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 329 -------------RALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp -------------HHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 222344566788999988665555567778999999 8999999999998753
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=5.2e-22 Score=191.17 Aligned_cols=307 Identities=12% Similarity=0.083 Sum_probs=199.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
+|++++|+.++.. ....|++.....+|++.+|++++ .+.+++++|+++|+..++.++. .+||.++++
T Consensus 13 ~p~v~~A~~~a~~----g~~~yg~~p~~~~le~~lA~~~G--------~~~~~~~~sGt~A~~~al~a~~-~~g~~~~~~ 79 (343)
T d1m6sa_ 13 TEEMRKAMAQAEV----GDDVYGEDPTINELERLAAETFG--------KEAALFVPSGTMGNQVSIMAHT-QRGDEVILE 79 (343)
T ss_dssp CHHHHHHHHTCCC----CCGGGTCCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHHC-CTTCEEEEE
T ss_pred CHHHHHHHHhhhc----CCcccCCCHHHHHHHHHHHHHHC--------CCeEEEeCCHHHHHHHHHHHHh-ccCCceecc
Confidence 4678888866532 22457766667899999999874 4578888999999999999997 899988886
Q ss_pred ----------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE-CCCCCCccCCCHHHHHHHHHHh
Q 041151 162 ----------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVII-NPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 162 ----------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~-~p~NPtG~~~s~~~l~~l~~~a 221 (463)
.+..+ +......|+ +.+++.+....+..+++..+++. .++|+.|.+.+.+++.+|.++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 158 (343)
T d1m6sa_ 80 ADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDP-DDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIA 158 (343)
T ss_dssp TTCHHHHSSTTHHHHHTCCEEEEECEETTEECH-HHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred ccccceeeecccccccccceeeccccccCccCH-HHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHH
Confidence 11222 344556788 88888876533333356666555 7899999999999999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
+++++++++|++|..+..+. .. ......... ....+.+.+|. ..|.+.|+++ +..+.+.....
T Consensus 159 ~~~g~~~~~D~a~~~~~~~~-~~-~~~~~~~~~---------~~~~~~~~~~~---~~g~~~~~~~---~~~~~~~~~~~ 221 (343)
T d1m6sa_ 159 KEHGINVHIDGARIFNASIA-SG-VPVKEYAGY---------ADSVMFCLSKG---LCAPVGSVVV---GDRDFIERARK 221 (343)
T ss_dssp HHHTCEEEEEETTHHHHHHH-HC-CCHHHHHHT---------CSEEEEESSST---TCCSSCEEEE---ECHHHHHHHHH
T ss_pred HhcCeEEEeccccccccccc-cc-cchhhhccc---------ccccccccccc---cccccccccc---ccHHHHhhhHh
Confidence 99999999999998765421 11 111111111 11333444443 3567778887 57887777766
Q ss_pred hhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeeccCC
Q 041151 302 IAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLP 380 (463)
Q Consensus 302 ~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~ 380 (463)
... ...+.+.....++.... .........+.+.++...+.+.+.++++.....|.++.++|++++.+
T Consensus 222 ~~~~~~~~~~~~~~~~a~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (343)
T d1m6sa_ 222 ARKMLGGGMRQAGVLAAAGII------------ALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNL 289 (343)
T ss_dssp HHHHHTCCCSSTHHHHHHHHH------------HHHHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTS
T ss_pred hCcccccccchhHHHHHhhhh------------hhhhhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCC
Confidence 654 33333333333333221 11111122333445555566666665455555555667778655422
Q ss_pred hhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 381 PKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
.. +..++ .+.|.++||.+.|. +..++||+++ .++|||++++++|+++++++
T Consensus 290 ~~-----------~a~~l-~~~L~~~Gi~v~~~-------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 290 KV-----------NAHGF-IEALRNSGVLANAV-------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp SS-----------CHHHH-HHHHHHHTEECEEE-------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cc-----------cHHHH-HHHHHHCCCEEecC-------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 11 23444 45577889999873 2237999988 78999999999999999876
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=2.7e-20 Score=184.93 Aligned_cols=305 Identities=15% Similarity=0.159 Sum_probs=208.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCc--cCC----CCCCHHHHHHHHHHHHHhcCCCC-CCCcEEEcCCcHHHHHHHHHHHh---
Q 041151 82 PADAIARAKHYLSLTSGGLGA--YSD----SRGIPGVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCVI--- 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~--Y~~----~~g~~~lr~~ia~~~~~~~g~~~-~~~~i~~t~G~~~al~~~~~~l~--- 151 (463)
|..+++++.+.+.+...+.+. +.. ..-..+.|+.+|++++ . .+++|++|+|+++++..++..+.
T Consensus 35 p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~------~~~~~~i~~~~~~T~~~~~~~~~~~~~~ 108 (405)
T d1jf9a_ 35 PSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFIN------ARSAEELVFVRGTTEGINLVANSWGNSN 108 (405)
T ss_dssp CHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcC------CCCcccccccCcHHHHHHHHHhcccccc
Confidence 899999998887763111111 110 0113466778888875 3 45799999999999998887632
Q ss_pred cCCCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 152 RGEGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 152 ~~~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
..+||.|++. .|+++ ...+..+|. +.+++++++ +|++|.++..+|.||.+++
T Consensus 109 ~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~-~~~~~~i~~------~t~lv~~~~v~~~tG~~~p 181 (405)
T d1jf9a_ 109 VRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQL-ETLPTLFDE------KTRLLAITHVSNVLGTENP 181 (405)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCG-GGHHHHCCT------TEEEEEEESBCTTTCCBCC
T ss_pred cCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCH-HHHHHhccC------CcEEEEEecCCCcccccCc
Confidence 2789999995 46666 345567888 999998887 8999999999999999999
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
+++|.++|+++|+++++|-+++.... +..+... +- .+++.|++|++ |.+| +|++++
T Consensus 182 ---i~~i~~~~~~~g~~~~vD~~q~~g~~-----~id~~~~--------~~---D~~~~s~hK~~-Gp~G--~g~l~v-- 237 (405)
T d1jf9a_ 182 ---LAEMITLAHQHGAKVLVDGAQAVMHH-----PVDVQAL--------DC---DFYVFSGHKLY-GPTG--IGILYV-- 237 (405)
T ss_dssp ---HHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHH--------TC---SEEEEEGGGTT-SCSS--CEEEEE--
T ss_pred ---hHHhhhHHHHcCCeeecccceecccc-----ccchhhc--------CC---ceeeccccccc-cCCC--ceeeee--
Confidence 66678888999999999999986322 3445443 22 27899999987 8888 788886
Q ss_pred CChhHHHHHHhhh----------------------h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHH-HHHHHHHHHH
Q 041151 291 IPPKTVDEIYKIA----------------------S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVR-ESKGILESLR 346 (463)
Q Consensus 291 ~~~~~~~~l~~~~----------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~ 346 (463)
+++..+.+.... . ...+.+.....++..+++ .... ..+.+.++..
T Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~----------~~~~~g~~~i~~~~~ 306 (405)
T d1jf9a_ 238 -KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE----------YVSALGLNNIAEYEQ 306 (405)
T ss_dssp -CHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHH
T ss_pred -chhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHH----------HHHHhChHHHHHHHH
Confidence 666655432110 0 012445555555555542 1111 1455666677
Q ss_pred HHHHHHHHHhhcCCCcccccCC--ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-----
Q 041151 347 RRARMMTDGFNSCRNVVCNFTE--GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK----- 419 (463)
Q Consensus 347 ~~~~~l~~~L~~~pg~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~----- 419 (463)
...+.+.+.++..+.+....|+ ++.+.+ .++.. +.. .+...|.++||.++.|+.|...
T Consensus 307 ~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf---~~~~~-----------~~~-~~~~~L~~~gI~v~~G~~c~~~~~~~~ 371 (405)
T d1jf9a_ 307 NLMHYALSQLESVPDLTLYGPQNRLGVIAF---NLGKH-----------HAY-DVGSFLDNYGIAVRTGHHCAMPLMAYY 371 (405)
T ss_dssp HHHHHHHHHHTTSTTEEEESCTTCCSEEEE---EETTC-----------CHH-HHHHHHHHTTEECEEECTTCHHHHHHT
T ss_pred HHHHHHHhhhhcCCcccccCCcCcCcEEEE---EcCCC-----------CHH-HHHHHHHHCCcEEEccchhhhhHHHhc
Confidence 7777888888887666555443 343332 22321 133 3456688999999998876431
Q ss_pred CCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 420 EGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 420 ~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
...+++|||++ ++.+|++.+++.|+++++-
T Consensus 372 ~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 372 NVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp TCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 22458999999 8999999999999887653
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.85 E-value=1e-19 Score=180.87 Aligned_cols=305 Identities=14% Similarity=0.176 Sum_probs=208.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCC------CCCHHHHHHHHHHHHHhcCCCCC-CCcEEEcCCcHHHHHHHHHHHh---
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDS------RGIPGVRKEVAEFIERRDGYPSD-PELIFLTDGASKGVMQTLNCVI--- 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~------~g~~~lr~~ia~~~~~~~g~~~~-~~~i~~t~G~~~al~~~~~~l~--- 151 (463)
|+.+++++.+.+.+...+.+.-... .-+.+.|+.++++++ .+ ++.|++++|+++++..++..+.
T Consensus 35 p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llg------a~~~~~i~~~~~tt~~~n~~~~~~~~~~ 108 (408)
T d1t3ia_ 35 PRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN------ARSPREIVYTRNATEAINLVAYSWGMNN 108 (408)
T ss_dssp CHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT------CSCGGGEEEESSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC------CCCcccEEeecchHHHHHHHHhhccccc
Confidence 8999999998887632111111000 112357888888886 55 5789999999999988886621
Q ss_pred cCCCCEEEEc-----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCC
Q 041151 152 RGEGDGVVLL-----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLS 210 (463)
Q Consensus 152 ~~~gd~Vlvp-----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s 210 (463)
.++|++|++. .|..+ .......+. +.+++.+++ ++++|.++..+|-||...+
T Consensus 109 ~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~l~~~~~~------~t~lv~i~~~~~~tG~~~p 181 (408)
T d1t3ia_ 109 LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDL-EHFKTLLSE------KTKLVTVVHISNTLGCVNP 181 (408)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCH-HHHHHHCCT------TEEEEEEESBCTTTCBBCC
T ss_pred cCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccH-HHhhhccCC------CceEEEEecccccccccCc
Confidence 2689999986 35555 344566788 999998877 8999999999999999999
Q ss_pred HHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecC
Q 041151 211 EANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTN 290 (463)
Q Consensus 211 ~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~ 290 (463)
+++|.++|+++|+++++|-+++... -+..+..+ +- .+++.|..|++ |.+| +|++++
T Consensus 182 ---~~~i~~~~~~~g~~~ivDa~q~~g~-----~~id~~~~--------~~---D~~~~s~hK~~-gp~G--~g~l~v-- 237 (408)
T d1t3ia_ 182 ---AEEIAQLAHQAGAKVLVDACQSAPH-----YPLDVQLI--------DC---DWLVASGHKMC-APTG--IGFLYG-- 237 (408)
T ss_dssp ---HHHHHHHHHHTTCEEEEECTTTTTT-----SCCCHHHH--------TC---SEEEEEGGGTT-SCTT--CEEEEE--
T ss_pred ---HHHHhhhhhccCceeeeccceeccc-----cccccccc--------CC---ceEEecccccc-CCCC--cccccc--
Confidence 6667788899999999999998632 23455443 22 37889999987 7777 688875
Q ss_pred CChhHHHHHHhhhh----------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHH
Q 041151 291 IPPKTVDEIYKIAS----------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLR 346 (463)
Q Consensus 291 ~~~~~~~~l~~~~~----------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 346 (463)
+++....+..... ...+.+.....++..+++ +..+ +++++++..
T Consensus 238 -~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~-----------~~~~~g~~~i~~~~~ 305 (408)
T d1t3ia_ 238 -KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVD-----------YLTDLGMENIHNYEV 305 (408)
T ss_dssp -CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHH-----------HHHHHCHHHHHHHHH
T ss_pred -chhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHH-----------HHHHcCHHHHHHHHH
Confidence 6666554421110 023344455555555542 2222 456777777
Q ss_pred HHHHHHHHHhhcCCCcccccCC------ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCC-
Q 041151 347 RRARMMTDGFNSCRNVVCNFTE------GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQK- 419 (463)
Q Consensus 347 ~~~~~l~~~L~~~pg~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~- 419 (463)
+..+++.+.+...+++.+..+. ++...+ .++.- +..+ +...|.++||.++.|+.|..+
T Consensus 306 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f---~~~~~-----------~~~~-v~~~L~~~gI~v~~G~~c~~~~ 370 (408)
T d1t3ia_ 306 ELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASF---NVAGL-----------HASD-VATMVDQDGIAIRSGHHCTQPL 370 (408)
T ss_dssp HHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEE---EETTB-----------CHHH-HHHHHHTTTEECBCSCTTCHHH
T ss_pred HHHhHHhhhhccCccccccCCCccccCcceEEEE---EeCCC-----------CHHH-HHHHHhhCCcEEecCcccccHH
Confidence 8888899999888777765432 233322 22211 1333 456678999999998877431
Q ss_pred ----CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 420 ----EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 420 ----~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
...+.+|||++ ++++|++.+++.|+++++.+
T Consensus 371 ~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 371 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 12347999999 89999999999999988753
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=3e-19 Score=175.39 Aligned_cols=308 Identities=14% Similarity=0.097 Sum_probs=189.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCc-cCC----CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh---cC
Q 041151 82 PADAIARAKHYLSLTSGGLGA-YSD----SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI---RG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~-Y~~----~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~---~~ 153 (463)
|+.+++++.+.+.+...+.++ |.. ..-+.+.|+++|++++ +++++|++++|+++++..++..+. ..
T Consensus 14 p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~------~~~~~i~~~~~~T~~l~~~~~~~~~~~~~ 87 (376)
T d1eg5a_ 14 DDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLG------VSPSEIFFTSCATESINWILKTVAETFEK 87 (376)
T ss_dssp CHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHT------SCGGGEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcC------CCCCcEEEECCHHHHHHhhhhcccccccc
Confidence 889999998888763111111 100 0112356888999987 889999999999999999886431 26
Q ss_pred CCCEEEEc----------------cCcee---c-CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 154 EGDGVVLL----------------FHTTW---K-RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 154 ~gd~Vlvp----------------~g~~~---~-~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
+|+.|+++ .|.++ + ...+.+|. +.+++++++ ++++|++++++|+||...+.++
T Consensus 88 ~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~-~~l~~~i~~------~t~lv~is~v~~~tG~~~~~~~ 160 (376)
T d1eg5a_ 88 RKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKL-EELEKLVDE------DTFLVSIMAANNEVGTIQPVED 160 (376)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCH-HHHHHHCCT------TEEEEEEESBCTTTCBBCCHHH
T ss_pred cCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECH-HHHHHhcCC------CceEEEEECCccccceeeeehh
Confidence 78888886 57666 3 45678999 999999988 8999999999999999999777
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+.++++. ...++++++|.++..... +..+ .+.+..++++|++|++ |.+|..+.|+- ...
T Consensus 161 i~~~~~~-~~~~~~~~vD~~q~~g~~-----~~d~-----------~~~~~D~~~~s~~K~~-gp~G~~~l~~~---~~~ 219 (376)
T d1eg5a_ 161 VTRIVKK-KNKETLVHVDAVQTIGKI-----PFSL-----------EKLEVDYASFSAHKFH-GPKGVGITYIR---KGV 219 (376)
T ss_dssp HHHHHHH-HCTTCEEEEECTTTTTTS-----CCCC-----------TTTCCSEEEEEGGGGT-SCTTCEEEEEC---TTS
T ss_pred hhhhhhh-cccCceeEEEeeeccccc-----cccc-----------cccCccceecccceee-cCCCceeEEec---cCc
Confidence 7666542 345899999999876432 1222 1222348999999998 89997777764 222
Q ss_pred hHHHHHHh---hhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC--
Q 041151 294 KTVDEIYK---IAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT-- 367 (463)
Q Consensus 294 ~~~~~l~~---~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-- 367 (463)
.+...+.. ... .....+......+..... ...................+.+.|...........
T Consensus 220 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 289 (376)
T d1eg5a_ 220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAME----------IAVEELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEI 289 (376)
T ss_dssp CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHH----------HHHHTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTS
T ss_pred ccCCcccCCCCcccccCCcccchhhhhHHHHhh----------ccccchhhhhhhhhhhhhhhccccccccccccccccc
Confidence 11100000 001 112223333333333321 11111233444455556667777766522222111
Q ss_pred -CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCC----------------CCcEEEEEec
Q 041151 368 -EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKE----------------GIFHLRTTIL 430 (463)
Q Consensus 368 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~----------------~~~~lRis~~ 430 (463)
...... +.++.. ....+...|.++||.+++|..|.... ..+++|+|++
T Consensus 290 ~~~~~~~---~~~~~~------------~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~ 354 (376)
T d1eg5a_ 290 SLPNTLS---VSFPNI------------RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLC 354 (376)
T ss_dssp BCTTEEE---EECTTC------------CHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECC
T ss_pred cccceee---eccCCC------------CHHHHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecC
Confidence 111122 122221 23345567889999999987664311 1246999999
Q ss_pred --CCcCcHHHHHHHHHHHHH
Q 041151 431 --PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 431 --~~~e~i~~~~~~l~~~l~ 448 (463)
++++|++++++.|+++++
T Consensus 355 ~ynt~edid~l~~~L~~iv~ 374 (376)
T d1eg5a_ 355 KYNTEEEVDYFLKKIEEILS 374 (376)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 799999999999999875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=5.5e-19 Score=167.95 Aligned_cols=306 Identities=10% Similarity=0.108 Sum_probs=187.8
Q ss_pred CCcHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 80 VFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 80 ~~p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
+.+|.+++++.++... ...+|++.....++|+.|+++++ .++++|++|+|+++++..++..+. .+++.++
T Consensus 11 g~~P~v~eAl~~~~~~---~~~~y~~~~~~~~lr~~ia~~~g------~~~~~v~~tsggtean~~a~~~~~-~~~~~~~ 80 (340)
T d1svva_ 11 GMHPKILDLMARDNMT---QHAGYGQDSHCAKAARLIGELLE------RPDADVHFISGGTQTNLIACSLAL-RPWEAVI 80 (340)
T ss_dssp CCCHHHHHHHHHHTTC---CCCSTTCSHHHHHHHHHHHHHHT------CTTSEEEEESCHHHHHHHHHHHHC-CTTEEEE
T ss_pred CCCHHHHHHHHHHhhc---CCCCCCCCHHHHHHHHHHHHHhC------CCcceEEEcCCHHHHHHHHHHHHh-hhccccc
Confidence 3478999999887654 34678776777889999999997 677899999999999999999997 8999888
Q ss_pred Ec---------------cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHh
Q 041151 160 LL---------------FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFC 221 (463)
Q Consensus 160 vp---------------~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a 221 (463)
++ .+... .......+. +..................++++.++|++|.+...+++..+.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (340)
T d1svva_ 81 ATQLGHISTHETGAIEATGHKVVTAPCPDGKLRV-ADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASC 159 (340)
T ss_dssp EETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCH-HHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHH
T ss_pred cccccceeeeecccccccceeeeecccccccccc-hhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhccc
Confidence 86 11111 233333444 444444333111111234444554444567778889999999999
Q ss_pred hhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 222 YQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 222 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
.+++.++++|++|............+....... ..+...+.+|.. .+.+.++.. ...........
T Consensus 160 ~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~ 224 (340)
T d1svva_ 160 KEHGLYLFLDGARLASALSSPVNDLTLADIARL---------TDMFYIGATKAG---GMFGEALII---LNDALKPNARH 224 (340)
T ss_dssp HHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHH---------CSEEEEECTTTT---CSSCEEEEE---CSGGGCTTHHH
T ss_pred ccccceeeeeccceeeeeccccccccccccccc---------ceeeecCCcccc---ccccccccc---cchhhhhhhhh
Confidence 999999999999976544222222232222111 124445555544 445566665 34444333332
Q ss_pred hhh---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc
Q 041151 302 IAS---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR 378 (463)
Q Consensus 302 ~~~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~ 378 (463)
... ...........++..++.. .. .....++...+++.+...|+.. |+.+..|..+.+++++++
T Consensus 225 ~~~~~~~~~~~~~~~~aa~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~v~~~~~ 291 (340)
T d1svva_ 225 LIKQRGALMAKGWLLGIQFEVLMKD-----NL-------FFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILE 291 (340)
T ss_dssp HHHHTTCCCTTTHHHHHHHHHHTST-----TH-------HHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEE
T ss_pred hcccccCccchhhHHHHHHHHHhhh-----hH-------HHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceEEEEeCC
Confidence 222 1222233334444444431 11 1223445667777888888887 888887776777775543
Q ss_pred CChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHH
Q 041151 379 LPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKK 445 (463)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~ 445 (463)
......++++..+...+... .+++++|+|++ ++++||++++++|++
T Consensus 292 -----------------~~~~~~l~~~~~~~~~~~~~----~~~~~vR~s~~~~~t~edid~~l~~l~~ 339 (340)
T d1svva_ 292 -----------------NTMIAELNNDFDMYTVEPLK----DGTCIMRLCTSWATEEKECHRFVEVLKR 339 (340)
T ss_dssp -----------------HHHHHHHTTTEECEEEEEET----TTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHhhhhhcccccC----CCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 12233444432222222221 34568999887 899999999999986
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=5e-19 Score=169.77 Aligned_cols=303 Identities=11% Similarity=0.006 Sum_probs=189.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
+|++++++.++... ....|+......++|+.+|++++ . +..+++|+|+++++..++..++ .+++.+++.
T Consensus 16 ~P~v~~A~~~a~~~---~~~~~~~~~~~~~l~~~la~~~g------~-~~~v~f~~sGt~An~~a~~~~~-~~~~~~~~~ 84 (345)
T d1v72a1 16 SPEVAQALVKHSSG---QAGPYGTDELTAQVKRKFCEIFE------R-DVEVFLVPTGTAANALCLSAMT-PPWGNIYCH 84 (345)
T ss_dssp CHHHHHHHHHTTSS---CCCSTTCSHHHHHHHHHHHHHHT------S-CCEEEEESCHHHHHHHHHHTSC-CTTEEEEEC
T ss_pred CHHHHHHHHHHhcc---CccccCCCHHHHHHHHHHHHHHC------C-CcEEEECCchHHHHHHHHHHHH-hcCCccccc
Confidence 78899999876543 34566666667789999999985 2 3579999999999999999987 788887776
Q ss_pred ----------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEE-EEECCCCCCccCCCHHHHHHHHHH
Q 041151 162 ----------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAM-VIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 162 ----------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i-~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
.+..+ .......++ +.+++.+.+.......+..+ +.++++|++|...+.++++++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 163 (345)
T d1v72a1 85 PASHINNDECGAPEFFSNGAKLMTVDGPAAKLDI-VRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDV 163 (345)
T ss_dssp TTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCH-HHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHH
T ss_pred cccceeeechhhHHHhcCcccccccccccccccH-HHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHH
Confidence 12222 344556788 99998887532222234444 444888999999999999999999
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++++++++|+++....+............ ... ......+.+|.. ....+.+ +. ..........
T Consensus 164 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~--~~~~~~~-~~---~~~~~~~~~~ 228 (345)
T d1v72a1 164 CKSSSLGLHMDGSRFANALVSLGCSPAEMTW--------KAG-VDALSFGATKNG--VLAAEAI-VL---FNTSLATEMS 228 (345)
T ss_dssp HHHTTCEEEEEETTHHHHHHHHTCCTTTTTG--------GGT-CCEEEECCGGGT--CSSCEEE-EE---SSGGGHHHHH
T ss_pred HHhcCceeeecccccceeccccccCHHHhhc--------ccc-ccccccCccccc--ccccccc-cc---chhhhhhhcc
Confidence 9999999999999976543111111111111 111 123333444432 2232233 22 2443333333
Q ss_pred hhh-hhcccCChHHHHHH--HHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeec
Q 041151 301 KIA-SIALSPNVPAQIFM--GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQI 377 (463)
Q Consensus 301 ~~~-~~~~~~~~~~q~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~ 377 (463)
... ......+.....++ ...+.. ...........++...+.+.+.++||+.+..|.++.++++++
T Consensus 229 ~~~~~~~~~~~~~~~aa~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~ 296 (345)
T d1v72a1 229 YRRKRAGHLSSKMRFLSAQIDAYLTD------------DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRL 296 (345)
T ss_dssp HHHHHTTCCCSSTHHHHHHHHHHTST------------THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEE
T ss_pred ccccccccccchhhHHhhhhHHHHHH------------hhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEc
Confidence 222 22222222222222 222221 111223444566667788888998899888777777777555
Q ss_pred cCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHH
Q 041151 378 RLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKF 446 (463)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~ 446 (463)
+ . ..+ +.|.++||.|.++. .+.+.+||+++ +++|||+++++.|+++
T Consensus 297 ~--~---------------~~~-~~L~~~gi~v~~~~-----~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 297 D--S---------------AMI-DALLKAGFGFYHDR-----WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp C--H---------------HHH-HHHHHTTCBCBCSS-----SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred C--H---------------HHH-HHHHHcCCCccccC-----CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3 1 223 34667799875532 23458999998 7899999999999864
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.5e-19 Score=176.65 Aligned_cols=305 Identities=11% Similarity=0.114 Sum_probs=200.2
Q ss_pred CCcHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCC
Q 041151 80 VFPADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGD 156 (463)
Q Consensus 80 ~~p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd 156 (463)
-+|+.+++++.... .++-++ .+-+.+.|+.++++++ ++.+ .|+++.|++++++.++..++ .+|+
T Consensus 29 ~~~~~Vl~am~~~~------i~HRs~~f~~i~~ea~~~l~~llg------~~~~~~ii~~gsgT~a~~~~i~~l~-~~~~ 95 (388)
T d1h0ca_ 29 NLPPRIMAAGGLQM------IGSMSKDMYQIMDEIKEGIQYVFQ------TRNPLTLVISGSGHCALEAALVNVL-EPGD 95 (388)
T ss_dssp CCCHHHHHHHTCCC------CCTTSHHHHHHHHHHHHHHHHHHT------CCCSEEEEESSCHHHHHHHHHHHHC-CSSC
T ss_pred CCCHHHHHHhCcCC------CCCCCHHHHHHHHHHHHHHHHHhC------CCCCcEEEEcCcHHHHHHHHHHHhh-ccCC
Confidence 34888888764211 111111 1123456666666664 4333 68999999999999999998 8999
Q ss_pred EEEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHH
Q 041151 157 GVVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREI 217 (463)
Q Consensus 157 ~Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l 217 (463)
.+++. .+... ......+|. +.+++.+... +++++++++.+|.||.+.+ +++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~v~~~~~~n~tG~i~p---i~~i 166 (388)
T d1h0ca_ 96 SFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTL-QEVEEGLAQH-----KPVLLFLTHGESSTGVLQP---LDGF 166 (388)
T ss_dssp CEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTH
T ss_pred ceeeecccceeeeeccccccccccccccccCCccccch-HHHHHHhccC-----CcceEEEeeeeeccccccC---HHHH
Confidence 98886 22222 455677888 8888877765 8999999999999999988 7778
Q ss_pred HHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH
Q 041151 218 LRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 218 ~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
.++|+++|+++++|.+++.... ...+ +..+..+++.|..|++.+.+| +|++++ ++..++
T Consensus 167 ~~~~~~~g~~~~vD~~qs~g~~-----~~d~-----------~~~~~D~~~~s~~K~~~gp~g--~~~~~~---~~~~~~ 225 (388)
T d1h0ca_ 167 GELCHRYKCLLLVDSVASLGGT-----PLYM-----------DRQGIDILYSGSQKALNAPPG--TSLISF---SDKAKK 225 (388)
T ss_dssp HHHHHTTTCEEEEECTTTTTTS-----CCCT-----------TTTTCSEEEEESSSTTCCCTT--CEEEEE---CHHHHH
T ss_pred HHHhhcccccceeccccccccc-----cccc-----------cccccceecccccccccCCCc--eEEEee---cHHHHH
Confidence 8889999999999999986433 1222 222234788999999855555 566664 676666
Q ss_pred HHHhhhh------------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHH
Q 041151 298 EIYKIAS------------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMM 352 (463)
Q Consensus 298 ~l~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 352 (463)
.+..... ...+++.....++..++. ...+. .+.+.++..+..+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~----------~~~~~g~~~~~~~~~~l~~~l 295 (388)
T d1h0ca_ 226 KMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLA----------LIAEQGLENSWRQHREAAAYL 295 (388)
T ss_dssp HHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHH
T ss_pred hhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHH----------HHHHhccccccccccchhHHH
Confidence 5532110 011233333333333321 12222 456677778888888
Q ss_pred HHHhhcCCCcccccCCce----eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 353 TDGFNSCRNVVCNFTEGA----MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 353 ~~~L~~~pg~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
++.+... |+....++.. ..+. +.+|.++ +..++...+++++||.+..|..... ...+|||
T Consensus 296 ~~~~~~~-g~~~~~~~~~~rs~~i~~--~~~p~~~----------~~~~~~~~L~~~~gI~v~~G~~~~~---~~~iRis 359 (388)
T d1h0ca_ 296 HGRLQAL-GLQLFVKDPALRLPTVTT--VAVPAGY----------DWRDIVSYVIDHFDIEIMGGLGPST---GKVLRIG 359 (388)
T ss_dssp HHHHHHH-TCCBSSCSGGGBCTTEEE--EECCTTC----------CHHHHHHHHHHHHCEECEECCGGGT---TTEEEEE
T ss_pred HHHHhhc-CcccccCCHHHcCCeEEE--EECCCCC----------CHHHHHHHHHhcCCEEEeCCchhhc---CCEEEEe
Confidence 8888876 5444332211 1222 3455432 3566677777888999998864322 2479999
Q ss_pred -ec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 429 -IL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 429 -~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
++ .+.+|+++++++|++++++++|+
T Consensus 360 ~~g~~~t~edid~li~aL~~~L~~l~k~ 387 (388)
T d1h0ca_ 360 LLGCNATRENVDRVTEALRAALQHCPKK 387 (388)
T ss_dssp CCGGGCSHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 65 77899999999999999988764
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.77 E-value=4.1e-17 Score=163.50 Aligned_cols=307 Identities=16% Similarity=0.112 Sum_probs=199.1
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc------------cCcee--
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL------------FHTTW-- 166 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp------------~g~~~-- 166 (463)
..|+......+|++.+|++++ .+.++++++++.|+..++.+++ ++||.|+.+ .|+.+
T Consensus 69 d~Y~~dpt~~~lE~~~a~l~G--------~e~al~~~SGt~An~~a~~~l~-~~Gd~Vi~~~~f~~~~~~i~~~g~~~~~ 139 (456)
T d1c7ga_ 69 EAYAGSENFYHLEKTVKELFG--------FKHIVPTHQGRGAENLLSQLAI-KPGQYVAGNMYFTTTRFHQEKNGATFVD 139 (456)
T ss_dssp CCSSSCHHHHHHHHHHHHHHC--------CSEEEEESSHHHHHHHHHHHHC-CTTEEEEESSCCHHHHHHHHHTTEEEEE
T ss_pred hhccCCchHHHHHHHHHHHhC--------CCeEEECCCHHHHHHHHHHHhc-CCCCeEecCcchHHHHHHHHHcCceeee
Confidence 468777777899999999985 5678889999999999999997 999999875 34433
Q ss_pred ------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHHhhhCCeEEEeccc
Q 041151 167 ------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRFCYQENLVLLGDEV 233 (463)
Q Consensus 167 ------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~a~~~~~~vi~Dea 233 (463)
....+.+|+ +.|++.+++..+. .+.++++.+++|+. |..++.+++++|.++|++||+.+++|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~d~-~~le~~I~~~~~~--~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a 216 (456)
T d1c7ga_ 140 IVRDEAHDASLNLPFKGDIDL-NKLATLIKEKGAE--NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDAT 216 (456)
T ss_dssp CBCGGGGCTTCCCSCTTCBCH-HHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccccccccccCCccccCCH-HHHHHHhhhcCCc--cceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcc
Confidence 123567899 9999999875322 46788888999986 5788999999999999999999999998
Q ss_pred ccccc------cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh---
Q 041151 234 YQQNI------YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--- 304 (463)
Q Consensus 234 y~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--- 304 (463)
+.... ...+....++..+..++ ..... ++..|++|.+ +.++ .|++++ .++++.++++....
T Consensus 217 ~~~~~a~~~~~~~~~~~~~~i~~i~~~~----~~~ad-~~s~s~~K~~-~~~~--GG~i~~--~~~~l~~~~r~~~~~~~ 286 (456)
T d1c7ga_ 217 RCVENAYFIKEQEAGYENVSIKDIVHEM----FSYAD-GCTMSGKKDC-LVNI--GGFLCM--NDEEMFSAAKELVVVYE 286 (456)
T ss_dssp THHHHHHHHHHHSTTCTTSCHHHHHHHH----HTTCS-EEEEETTTTT-CCSS--CEEEEE--SCHHHHHHHHHHHHHHT
T ss_pred hhhcchhhhcccccccCCCChhhhcccc----ccccc-cEEEeccccc-cccc--eeEEEc--CCHHHHHHHHHhccccC
Confidence 75321 00122233454444433 11112 5667999988 5433 588876 57777777765432
Q ss_pred --h-cccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEEeeecc--C
Q 041151 305 --I-ALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYSFPQIR--L 379 (463)
Q Consensus 305 --~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~--~ 379 (463)
. ..+.+.....+++..+. +.. ..+..++..++.++|.+.|.+. |+.+..|.++...+++.. +
T Consensus 287 g~~~~g~~~~~~~~a~a~~l~----------e~~--~~~~l~~r~~~~~~L~e~L~~~-g~~vv~p~g~~~v~vda~~~~ 353 (456)
T d1c7ga_ 287 GMPSYGGLAGRDMEAMAIGLR----------EAM--QYEYIEHRVKQVRYLGDKLREA-GVPIVEPTGGHAVFLDARRFC 353 (456)
T ss_dssp CCTTTTTCCHHHHHHHHHHHH----------HHT--CHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHC
T ss_pred CCcccchhhHHHHHHHHHHHH----------Hhc--CHHHHHHHHHHHHHHHHHHHhc-cCCcccCCCCcceeEechhhc
Confidence 1 12222332333322221 000 0112233355567888999988 888888888877765532 1
Q ss_pred ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC--CC--------CCCCcEEEEEec---CCcCcHHHHHHHHHHH
Q 041151 380 PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF--GQ--------KEGIFHLRTTIL---PAEEDMPAIMESFKKF 446 (463)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f--~~--------~~~~~~lRis~~---~~~e~i~~~~~~l~~~ 446 (463)
|.--. . ......++..++.+.||...+...+ +. .+....+|+++. .+.++|+..++.|+++
T Consensus 354 ~~i~~--~----~~~~~~~~~~l~~~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v 427 (456)
T d1c7ga_ 354 PHLTQ--D----QFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427 (456)
T ss_dssp TTSCG--G----GCHHHHHHHHHHHHHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred cCCCc--c----cccHHHHHHHHHHHhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHH
Confidence 11000 0 0113456677788899976542211 11 112346999998 3778898888888766
Q ss_pred HH
Q 041151 447 ND 448 (463)
Q Consensus 447 l~ 448 (463)
.+
T Consensus 428 ~~ 429 (456)
T d1c7ga_ 428 YQ 429 (456)
T ss_dssp HT
T ss_pred Hh
Confidence 54
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.5e-16 Score=152.54 Aligned_cols=271 Identities=16% Similarity=0.125 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------------cCCCccc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------------KRQQIGV 173 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------------~~~~~~~ 173 (463)
..|.+.+++..+ .+..+++++++.|+..++.+++ ++||.|+++ +|... .......
T Consensus 53 ~~le~~la~LEg--------g~~a~~~sSGMaAi~~~l~~l~-~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~ 123 (384)
T d1cs1a_ 53 DVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG 123 (384)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT
T ss_pred HHHHHHHHHHhC--------CCceEEecChHHHHHHHHhhcc-cccceecccccccchhhhhhhhhhcccccccccccCC
Confidence 466666666653 5678888999999999999998 999999997 33322 1111224
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 253 (463)
|. +++++++++ ++++||+.+|.|||..+.+ +++|+++|+++|+++|+|+.|+...+ .. ++.
T Consensus 124 d~-~~~~~~~~~------~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~---~~--Pl~---- 184 (384)
T d1cs1a_ 124 DE-QALRAALAE------KPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPAL---QN--PLA---- 184 (384)
T ss_dssp CH-HHHHHHHHT------CCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT---CC--GGG----
T ss_pred CH-HHHHhhccc------cccEEEEeccccccceecc---HHHHhhhhhhcCcEEEEeccccCccc---cc--ccc----
Confidence 67 889998888 8999999999999999988 77888888899999999999975433 11 111
Q ss_pred hcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH
Q 041151 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE 332 (463)
Q Consensus 254 ~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 332 (463)
+ +. .|+++|.||.++|...+-.|.++. .++.+.+.+...+. .....++.....+..-|+
T Consensus 185 -~----Ga---DiVvhS~TKyi~Ghsdv~~G~vv~--~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~---------- 244 (384)
T d1cs1a_ 185 -L----GA---DLVLHSCTKYLNGHSDVVAGVVIA--KDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR---------- 244 (384)
T ss_dssp -G----TC---SEEEEETTTTTTCSSCCCCEEEEE--SSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHT----------
T ss_pred -c----CC---CEEEEccccccccCCCcccccccC--CchhhhhhhhhhhhhhhhccccccHHHHhhccc----------
Confidence 1 22 289999999998777777887775 46677777776654 455666666666655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccC-----------------CceeEEeeeccCChhhHHHHhhcCCCC
Q 041151 333 QFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFT-----------------EGAMYSFPQIRLPPKAIEAAKRAGKVP 394 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (463)
.+.-+.++..++...+.+.|+..|.+.. ..| -|+++.+ .+. .
T Consensus 245 ----TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf-~l~--~------------- 304 (384)
T d1cs1a_ 245 ----TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSF-ELD--G------------- 304 (384)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EES--S-------------
T ss_pred ----hhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCcceeEE-eec--c-------------
Confidence 2333455678888899999988766532 222 1444443 222 1
Q ss_pred hHHHHHHHHHhcCeEeeCCCCCCCC------------------------CCCcEEEEEecCCcCcHHHHHHHHHHHHHHH
Q 041151 395 DVFYCLRLLEATGISTVPGSGFGQK------------------------EGIFHLRTTILPAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 395 ~~~~~~~ll~~~gI~v~pg~~f~~~------------------------~~~~~lRis~~~~~e~i~~~~~~l~~~l~~~ 450 (463)
+.+.+.+.++.-.+.. .+..+|.. -..+.||||++. |+.+.+++.|+++++..
T Consensus 305 ~~~~a~~f~~~L~l~~-~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~lvRlSvGl--Ed~eDLi~Dl~~AL~aa 381 (384)
T d1cs1a_ 305 DEQTLRRFLGGLSLFT-LAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI--EDGEDLIADLENGFRAA 381 (384)
T ss_dssp CHHHHHHHHHTCSSSE-EBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--SCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCcce-eccccCCccceeccccccccccCCHHHHHhcCCCcCeEEEEecc--CCHHHHHHHHHHHHHHh
Confidence 2333445555544322 12222210 023579999995 67888899998888765
Q ss_pred H
Q 041151 451 M 451 (463)
Q Consensus 451 ~ 451 (463)
.
T Consensus 382 ~ 382 (384)
T d1cs1a_ 382 N 382 (384)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.76 E-value=1.5e-15 Score=147.41 Aligned_cols=267 Identities=14% Similarity=0.135 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------cCceecCCCcc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL-----------------FHTTWKRQQIG 172 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp-----------------~g~~~~~~~~~ 172 (463)
..|.+.+|+..+ .+..+++++++.|+..++.+++ ++||+|+++ .|+++. .-..
T Consensus 66 ~~LE~~la~LEg--------g~~a~~~sSGmaAi~~~l~~ll-~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~-~vd~ 135 (397)
T d1y4ia1 66 DALEKKLAVLER--------GEAGLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVR-FVDA 135 (397)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEE-EECT
T ss_pred HHHHHHHHHHhC--------CccceeehHHHHHHHHHHhhcc-CCCCeeeeecccccccchhhhcccCCCceEee-ccCC
Confidence 355555555542 4667888888999999999998 999999998 344441 1112
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
-|. +.+++++++ ++|+|++.+|.|||..+.+ +++|+++|+++|+++++|..|+...+ .. ++.
T Consensus 136 ~d~-~~~~~~i~~------~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~---~~--Pl~--- 197 (397)
T d1y4ia1 136 GKP-EEIRAAMRP------ETKVVYIETPANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYC---QQ--PLQ--- 197 (397)
T ss_dssp TSH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT---CC--GGG---
T ss_pred CCH-HHHHHhcCC------CCcEEEecCCcccceeecc---cHHHHHHhhcCCceEEecCcccCccc---Cc--chh---
Confidence 367 889999887 8999999999999999987 77888889999999999999986433 11 211
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH--hhhh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY--KIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~--~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
+ +. .|+++|.+|.++|....-.|.++ ++++.+...+ ..+. .+...++.....+..-|+
T Consensus 198 --~----Ga---DivihS~TKyi~Ghsdvl~G~v~---~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~------- 258 (397)
T d1y4ia1 198 --L----GA---DIVVHSVTKYINGHGDVIGGIIV---GKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVK------- 258 (397)
T ss_dssp --G----TC---SEEEEETTTTTTCSSCCCCEEEE---ECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT-------
T ss_pred --c----CC---CEEEEehhhhcCCCcceeeeccC---CCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcC-------
Confidence 1 22 28999999999777777677776 5777776543 3343 355566666666665554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccC-----------------CceeEEeeeccCChhhHHHHhhcC
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVVC-NFT-----------------EGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~-~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
.+.-+.++..++...+.+.|++.|.++. ..| .|+++.+ .+. .
T Consensus 259 -------TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf-~~~--~---------- 318 (397)
T d1y4ia1 259 -------TLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISF-EIA--G---------- 318 (397)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEE-EET--T----------
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeEEEE-Eec--C----------
Confidence 2333455677888899999998876532 222 3555554 222 1
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCC------------------------CCCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQK------------------------EGIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~------------------------~~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
+.+.+.+.+..-.+.- .+..+|.. -..+.+|||++. |+.+.+++.|.+++
T Consensus 319 ---~~~~~~~f~~~L~l~~-~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~Gi~~~liRlsvGl--Ed~~DLi~Dl~~AL 392 (397)
T d1y4ia1 319 ---GLEAGRRMINSVELCL-LAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGL--EDPEDIINDLEHAI 392 (397)
T ss_dssp ---HHHHHHHHHHTCSSSE-ECSCCSCSSCEEECTTTTTTSSSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHcCCccc-eeeccCcccceeeCccccccccCCHHHHHHcCCCcCEEEEEecc--CCHHHHHHHHHHHH
Confidence 2333445555544432 23233220 023589999995 67788888888888
Q ss_pred HH
Q 041151 448 DE 449 (463)
Q Consensus 448 ~~ 449 (463)
++
T Consensus 393 ~~ 394 (397)
T d1y4ia1 393 RK 394 (397)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.76 E-value=5e-16 Score=150.97 Aligned_cols=269 Identities=15% Similarity=0.175 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------c------CCCccc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------K------RQQIGV 173 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------~------~~~~~~ 173 (463)
..|.+.||+..+ .+..+++++|+.|+..++.+++ ++||+|+++ +|... + ......
T Consensus 70 ~~LE~~la~LEg--------g~~a~~~sSGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~ 140 (398)
T d1qgna_ 70 VVLEEKISALEG--------AESTLLMASGMCASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 140 (398)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred HHHHHHHHHHhC--------CceEEEecCcchHHHHHHhhcc-cccccccccccccchhhhhhccccccccccccccccc
Confidence 466777777653 5678899999999999999998 899999997 33322 0 001112
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 253 (463)
+. +..++.+... ++++|++.+|.|||..+.+ +++|+++|+++|+++++|..++...+ ..+..
T Consensus 141 ~~-~~~~~~~~~~-----~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~---~~Pl~------ 202 (398)
T d1qgna_ 141 DV-GALELALNQK-----KVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLN---QKALA------ 202 (398)
T ss_dssp CH-HHHHHHHHHS-----CEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTT---CCTTT------
T ss_pred ch-hhhhhhhccc-----cceEEEccCccccccccch---HHHHHHHHhhcCCEEEecceeecccc---CCchh------
Confidence 34 4444443332 8999999999999999987 88888899999999999999975433 11111
Q ss_pred hcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH
Q 041151 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE 332 (463)
Q Consensus 254 ~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 332 (463)
+ +. .|++.|.+|.++|...+-.|.++ ++++++..++..+. .....++.....+..-|+
T Consensus 203 -~----Ga---DiVihS~TKy~~Ghsdv~~G~v~---~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~---------- 261 (398)
T d1qgna_ 203 -L----GA---DLVLHSATKFLGGHNDVLAGCIS---GPLKLVSEIRNLHHILGGALNPNAAYLIIRGMK---------- 261 (398)
T ss_dssp -T----TC---SEEEECTTTTTTCSSSCCCEEEE---ECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG----------
T ss_pred -h----CC---CEEEEechhhcCcccceeehhhc---chhhhhhhhhhhcccCCCcCCHHHHHHHHhcch----------
Confidence 1 22 28999999999777677677766 58888888887775 455666666666665553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccC-----------------CceeEEeeeccCChhhHHHHhhcCCCC
Q 041151 333 QFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFT-----------------EGAMYSFPQIRLPPKAIEAAKRAGKVP 394 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (463)
.+.-+.++..++...+.+.|++.|.+. +..| .|+++.+ .+. .
T Consensus 262 ----TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf-~~~--g------------- 321 (398)
T d1qgna_ 262 ----TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSF-EVD--G------------- 321 (398)
T ss_dssp ----GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEE-EES--S-------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeee-eec--C-------------
Confidence 233345667888889999999877654 2222 1444443 222 1
Q ss_pred hHHHHHHHHHhcCeEeeCCCCCCCC------------------------CCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 395 DVFYCLRLLEATGISTVPGSGFGQK------------------------EGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 395 ~~~~~~~ll~~~gI~v~pg~~f~~~------------------------~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+.+.+.+++..-.+.- .+..+|.. -..+.||||++. |+.+.+++.|++++++
T Consensus 322 ~~~~a~~f~~~L~l~~-~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl--Ed~eDLi~Dl~~AL~~ 397 (398)
T d1qgna_ 322 DLLTTAKFVDALKIPY-IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV--EDFDDLKADILQALDS 397 (398)
T ss_dssp CHHHHHHHHHHCSSSE-ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCcce-eeeCCCCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHhc
Confidence 2233344455444322 23333320 023589999995 5777888888888865
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=4e-16 Score=151.30 Aligned_cols=202 Identities=13% Similarity=0.138 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------------cCCCcc
Q 041151 109 IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------------KRQQIG 172 (463)
Q Consensus 109 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------------~~~~~~ 172 (463)
...|++.|++..+ .+..+++++++.|+..++.+++ ++||+|+++ ||... ...-..
T Consensus 61 ~~~LE~~la~LEg--------~~~a~~~~SGmaAi~~~l~~l~-~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~ 131 (392)
T d1gc0a_ 61 LNLLEARMASLEG--------GEAGLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM 131 (392)
T ss_dssp HHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHhC--------CcceeehhhHHHHHHHHHHhhc-cCCCeeecccccchhhhhhhhhhhccCCcccccCCc
Confidence 3466666666653 5678888999999999999998 899999997 44433 011112
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
-|. +++++++++ ++|+|++.+|.|||..+.+ +++|+++|+++|+++++|..|+...+ .. ++
T Consensus 132 ~d~-~~~~~ai~~------~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~---~~--Pl---- 192 (392)
T d1gc0a_ 132 ADL-QALEAAMTP------ATRVIYFESPANPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYL---QR--PL---- 192 (392)
T ss_dssp TCH-HHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHH---CC--GG----
T ss_pred cCH-HHHHHhCCC------CCeEEEecccccceeeecc---hHHHHHHHHhcCCEEEEecCccCccc---cC--hH----
Confidence 377 899999987 8999999999999999988 88888899999999999999986443 11 11
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH--hhhh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY--KIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~--~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
++ +. .|++.|.+|.++|...+-.|.++ ++.+.+.+++ ..+. .....++.....+..-++
T Consensus 193 -~~----Ga---DivihS~TKyi~Ghsd~~~G~v~---~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~------- 254 (392)
T d1gc0a_ 193 -EL----GA---DLVVHSATKYLSGHGDITAGIVV---GSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK------- 254 (392)
T ss_dssp -GG----TC---SEEEEETTTTTTCSSSCCCEEEE---ECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT-------
T ss_pred -Hh----CC---CEEEEecceeecCCccccccccc---chhHHHHHHHHHHHHHccCCcCChhhHHHHHhccc-------
Confidence 11 22 28999999999776777778877 4777776553 3343 355666666666666554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.+.-+.++..++...+.+.|++.|.++
T Consensus 255 -------TL~lRm~~~~~nA~~lA~~L~~hp~V~ 281 (392)
T d1gc0a_ 255 -------TLNLRMDRHCANAQVLAEFLARQPQVE 281 (392)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 233355667788888999998876654
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.74 E-value=2.3e-16 Score=152.69 Aligned_cols=201 Identities=12% Similarity=0.141 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------------cCCCccc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------------KRQQIGV 173 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------------~~~~~~~ 173 (463)
..|.+.+|+..+ .+..+++++++.|+.. +..++ ++||+|+++ +|... .......
T Consensus 52 ~~le~~la~LE~--------~~~a~~fsSGMaAisa-ll~ll-~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~ 121 (380)
T d1ibja_ 52 DALESLLAKLDK--------ADRAFCFTSGMAALSA-VTHLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT 121 (380)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHH-HHTTS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT
T ss_pred HHHHHHHHHHcC--------CceEEehhhHHHHHHH-HHHhh-CCCCEEEEEecccccccchhhhhhccccccccccCcc
Confidence 466666666653 4667788888999974 55676 899999997 33322 1111223
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLM 253 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 253 (463)
|. +++++++++ ++|+|++.+|.|||..+.+ +++|+++|+++|+++|+|+.|+...+ .. ++.
T Consensus 122 ~~-~~~~~ai~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~---~~--Pl~---- 182 (380)
T d1ibja_ 122 KL-DEVAAAIGP------QTKLVWLESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVL---SR--PLE---- 182 (380)
T ss_dssp SH-HHHHHHCCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTT---CC--GGG----
T ss_pred hH-HHHHHHhcc------CccEEEecccccccccccc---HHHHHHHHHHcCCeEEeecccccccc---cc--ccc----
Confidence 56 888888876 8999999999999999988 77788888899999999999976433 11 221
Q ss_pred hcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHH
Q 041151 254 DMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYE 332 (463)
Q Consensus 254 ~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~ 332 (463)
+ +. .|++.|.+|.++|....-.|.+++ .+..+.+.+...+. .....++.....+..-++
T Consensus 183 -~----Ga---DiVvhS~TKyi~GhsDv~~G~v~~--~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~---------- 242 (380)
T d1ibja_ 183 -L----GA---DIVMHSATKFIAGHSDVMAGVLAV--KGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIK---------- 242 (380)
T ss_dssp -T----TC---SEEEEETTTTTTCSSCCCCEEEEE--CSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHT----------
T ss_pred -c----CC---CEEEecccceeccccCcccccccc--chhhHHHHHHhhccccCCcCCHHHHHHHHhcch----------
Confidence 1 22 389999999998877777888876 56777787777665 455566666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 333 QFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.+.-+.++..++...+.+.|++.|.+.
T Consensus 243 ----Tl~lRm~~~~~nA~~lA~~L~~hp~V~ 269 (380)
T d1ibja_ 243 ----TMALRIEKQQENARKIAMYLSSHPRVK 269 (380)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred ----hhhhhHHHHHHHHHHHHHHHHhCCCee
Confidence 233355667888888999999876554
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.74 E-value=8.7e-18 Score=169.59 Aligned_cols=310 Identities=15% Similarity=0.153 Sum_probs=189.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCE-------EEEc------------
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDG-------VVLL------------ 161 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~-------Vlvp------------ 161 (463)
..|+...+..+|++.++++++ .+.+++++++++|...++.+++ ++|+. ++.+
T Consensus 69 ~~y~~~~~~~~le~~~a~l~g--------~~~~~~~~sGt~A~~~a~~~~~-~~g~~~~~~~~~~i~~~~h~~t~~~~~~ 139 (465)
T d1ax4a_ 69 EAYAGSRNYYDLKDKAKELFN--------YDYIIPAHQGRGAENILFPVLL-KYKQKEGKAKNPVFISNFHFDTTAAHVE 139 (465)
T ss_dssp CCSSSCHHHHHHHHHHHHHHC--------CCEEEEESSHHHHHHHHHHHHH-HHHHHTTCCSSCEEEESSCCHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHC--------CCEEEECCCcHHHHHHHHHHHH-HHHHhcCCCCCeEEeccchhhhhHHHHH
Confidence 468877778899999999974 5789999999999999999997 55543 2332
Q ss_pred -cCcee--------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-cCCCHHHHHHHHHHhhhCC
Q 041151 162 -FHTTW--------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG-QCLSEANLREILRFCYQEN 225 (463)
Q Consensus 162 -~g~~~--------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG-~~~s~~~l~~l~~~a~~~~ 225 (463)
.|..+ ....+.+|. +.|++++++..+. .+.+++++.++|..| ..++.+++++|.++|++||
T Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g 216 (465)
T d1ax4a_ 140 LNGCKAINIVTEKAFDSETYDDWKGDFDI-KKLKENIAQHGAD--NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHG 216 (465)
T ss_dssp HTTCEEEECBCGGGGCTTSCCTTTTCBCH-HHHHHHHHHHCGG--GEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHT
T ss_pred HcCCeeecccccccCCCCCCCCccCccCH-HHHHHHHHhhccc--cccceeeccccccCceecCCHHHHHHHHHHHHHcC
Confidence 23222 234567899 9999999875322 455666666666654 6689999999999999999
Q ss_pred eEEEeccccccccc------CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHH
Q 041151 226 LVLLGDEVYQQNIY------QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEI 299 (463)
Q Consensus 226 ~~vi~Deay~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l 299 (463)
+++|+|+++..... ..+....+...+.+++ ... ..++..|.+|.. .+++.|++++.+ ...+....
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~-~d~~s~s~~k~~---~~~~~g~l~~~~-~~~~~~~~ 287 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDM----YKY-ADALTMSAKKDP---LLNIGGLVAIRD-NEEIFTLA 287 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHH----GGG-CSEEEEETTSTT---CCSSCEEEEESS-CHHHHHHH
T ss_pred CEEEEECcchhhhhcccccccccccccchhhhcccc----ccc-cceeEeecccCc---ccccceeEeecc-hHHHHHhh
Confidence 99999999863211 0011112344444443 111 124556666654 577789998621 22233332
Q ss_pred Hhhh---h---hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCceeEE
Q 041151 300 YKIA---S---IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTEGAMYS 373 (463)
Q Consensus 300 ~~~~---~---~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~g~~~~ 373 (463)
.... . ...+.......++...+. ....+...++..++.+++.+.|++. |+.+..+.+++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------------e~~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~ 354 (465)
T d1ax4a_ 288 RQRCVPMEGFVTYGGLAGRDMAAMVQGLE------------EGTEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAV 354 (465)
T ss_dssp HHHHHHHTCSTTTTTCCHHHHHHHHHHHH------------HTTCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEE
T ss_pred hccccccccCCCcchhhHHHHHHHhhhhH------------HhhhHHHHHHHHHHHHHHHHHHHhh-cCccccCCCccee
Confidence 2221 1 112222223322222221 0001223444556678899999987 8888888888777
Q ss_pred eeeccC--ChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC--------CC--CCCCcEEEEEec---CCcCcHHH
Q 041151 374 FPQIRL--PPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF--------GQ--KEGIFHLRTTIL---PAEEDMPA 438 (463)
Q Consensus 374 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f--------~~--~~~~~~lRis~~---~~~e~i~~ 438 (463)
+.+... +... ... -........++.+.||........ +. ......+|+++. .++||++.
T Consensus 355 ~~~~~~~~~~~~-----~~~-~~~~~~~~~ll~~~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~ 428 (465)
T d1ax4a_ 355 FVDCKKLVPQIP-----GDQ-FPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDY 428 (465)
T ss_dssp EEESTTTCTTSC-----GGG-CHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHH
T ss_pred eeehhhhcCCCc-----ccc-chhHHHHHHHHHhcCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHH
Confidence 765532 1100 000 013445667788899976542211 10 112347999976 47899999
Q ss_pred HHHHHHHHHHHH
Q 041151 439 IMESFKKFNDEF 450 (463)
Q Consensus 439 ~~~~l~~~l~~~ 450 (463)
+++.|+++.++.
T Consensus 429 vv~~l~~v~~~~ 440 (465)
T d1ax4a_ 429 IADALIGLKEKF 440 (465)
T ss_dssp HHHHHHTTHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=4.9e-16 Score=152.35 Aligned_cols=282 Identities=10% Similarity=0.058 Sum_probs=178.8
Q ss_pred HHHHHHHhcCC--CCCCCcEEEcCCcHHHHHHHHHHHhc--CCCCEEEEc---------------cCcee-----cCCCc
Q 041151 116 VAEFIERRDGY--PSDPELIFLTDGASKGVMQTLNCVIR--GEGDGVVLL---------------FHTTW-----KRQQI 171 (463)
Q Consensus 116 ia~~~~~~~g~--~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~Vlvp---------------~g~~~-----~~~~~ 171 (463)
+.+-+++..+. +.+++.|++|+|++++++.++..++. ++||+|++. .|... ...+.
T Consensus 41 ~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (382)
T d2bkwa1 41 VLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGE 120 (382)
T ss_dssp HHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTS
T ss_pred HHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccccccCCCC
Confidence 33444444443 23556899999999999999999862 579999987 33322 33445
Q ss_pred ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHH
Q 041151 172 GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKV 251 (463)
Q Consensus 172 ~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~ 251 (463)
..+. +.+++.+.+. +++++++++.+|.||...+.+++.+++. ++.+++++++|.+.+.... +..+
T Consensus 121 ~~~~-~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~~~~~~~~~~-~~~~~~~~~vDa~qs~g~~-----pid~--- 185 (382)
T d2bkwa1 121 SVPL-ELITEKLSQN-----SYGAVTVTHVDTSTAVLSDLKAISQAIK-QTSPETFFVVDAVCSIGCE-----EFEF--- 185 (382)
T ss_dssp CCCH-HHHHHHHHHS-----CCSEEEEESEETTTTEECCHHHHHHHHH-HHCTTSEEEEECTTTTTTS-----CCCT---
T ss_pred ccch-hHHHHHhhhc-----cchheeeeeccccccccccchhhhhhcc-ccccceeeeeecccccccc-----cccc---
Confidence 5777 8888887763 7899999999999999999665554332 3345799999999986433 2232
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh---------------------------
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS--------------------------- 304 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~--------------------------- 304 (463)
+.++-.+++.|-.|++.|++| +|++++ +++.++.+.....
T Consensus 186 --------~~~giD~~~~s~~K~l~gP~G--~g~l~v---s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (382)
T d2bkwa1 186 --------DEWGVDFALTASQKAIGAPAG--LSISLC---SSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGA 252 (382)
T ss_dssp --------TTTTCSEEEEESSSTTCCCSC--EEEEEE---CHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCC
T ss_pred --------cccCeeEEeecccccCcCCCc--hhhhhc---cHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccc
Confidence 333345899999999877888 788886 7777665532210
Q ss_pred hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCccccc---CCceeEEeeeccCC
Q 041151 305 IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRNVVCNF---TEGAMYSFPQIRLP 380 (463)
Q Consensus 305 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~~~---~~g~~~~~~~~~~~ 380 (463)
...+++...-.++..+|+ ....+ .+...++.++..+++++.+....++.... +.......+.+..|
T Consensus 253 ~~~Tp~~~~i~al~~aL~----------~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~~~~ 322 (382)
T d2bkwa1 253 YFATPPVQLINSLDVALK----------EILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA 322 (382)
T ss_dssp CSSCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECS
T ss_pred cccCCcHHHHHHHHHHHH----------HHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEEcCC
Confidence 122344444455555542 22222 44556667777888888887644433322 11111111113444
Q ss_pred hhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE-ec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 381 PKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT-IL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis-~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
. ..+ +...|+++||.+.+|..... +...+||+ ++ .++++++.+++.|..+.+.++
T Consensus 323 ~-------------~~~-~~~~L~~~gi~i~~G~~~~~--~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~ 380 (382)
T d2bkwa1 323 D-------------PPD-VIAFLKSHGVVIAGGIHKDI--GPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380 (382)
T ss_dssp C-------------HHH-HHHHHHHTTEECBCCCCTTT--GGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred C-------------HHH-HHHHHHHCCeEEECCCChhh--cCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHHHC
Confidence 3 233 45678899999998754322 33579999 65 456778888887766555544
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.70 E-value=9e-16 Score=149.96 Aligned_cols=300 Identities=10% Similarity=0.094 Sum_probs=187.9
Q ss_pred CCcHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCC-CcEEEcCCcHHHHHHHHHHHhcCCCC
Q 041151 80 VFPADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDP-ELIFLTDGASKGVMQTLNCVIRGEGD 156 (463)
Q Consensus 80 ~~p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~-~~i~~t~G~~~al~~~~~~l~~~~gd 156 (463)
-+|+.+++++... ..++++. ..-+.+.|+.++++++ ++. ..|++++|++.+++.++..++ .+|+
T Consensus 28 ~v~~~Vl~am~~~------~~~hr~~ef~~i~~~~r~~l~~ll~------~~~~~~i~~~g~gT~~~~~~~~~~~-~~~~ 94 (377)
T d1vjoa_ 28 NAHPSVLQAMNVS------PVGHLDPAFLALMDEIQSLLRYVWQ------TENPLTIAVSGTGTAAMEATIANAV-EPGD 94 (377)
T ss_dssp CCCHHHHHHHSSC------CCCTTSHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHC-CTTC
T ss_pred CCCHHHHHHhCcC------CCCCCCHHHHHHHHHHHHHHHHHhC------CCCCeEEEEcCcHHHHHHHHHHhcc-cccc
Confidence 3488888775321 2223332 1123566666666664 433 477788889999999999998 8999
Q ss_pred EEEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHH
Q 041151 157 GVVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREI 217 (463)
Q Consensus 157 ~Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l 217 (463)
.+++. .+... ...+...+. +..+....+. +++++.+++-+|.||...+ +++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~v~~~~~~~~tg~~~~---i~~i 165 (377)
T d1vjoa_ 95 VVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSL-EELRTALETH-----RPAILALVHAETSTGARQP---LEGV 165 (377)
T ss_dssp EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CTTH
T ss_pred ccceeeechhhhhhhhhhhhhcccccccccCCCCcccc-hhhhhhhhcC-----cceeeeeeeeeccceeeec---hhhh
Confidence 88886 22222 334444555 5555555443 8899999999999999988 7777
Q ss_pred HHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH
Q 041151 218 LRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 218 ~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
.++|++++.++++|.+++.... ...+ +..+-.+++.|..|.+.|.+| +|++++ .+..++
T Consensus 166 ~~~~~~~g~~~~vDa~~~~g~~-----~~~~-----------~~~~~d~~~~s~~K~~~gp~g--~~~~~~---~~~~~~ 224 (377)
T d1vjoa_ 166 GELCREFGTLLLVDTVTSLGGV-----PIFL-----------DAWGVDLAYSCSQKGLGCSPG--ASPFTM---SSRAIE 224 (377)
T ss_dssp HHHHHHHTCEEEEECTTTTTTS-----CCCT-----------TTTTCSEEECCSSSTTCSCSS--CEEEEE---CHHHHH
T ss_pred hhhhhhccceEEEecchhhhhh-----hhcc-----------cccccceeeecccccccCCCE--EEEecc---hhhHHh
Confidence 8888899999999999985433 1222 222334788999998855555 666664 676666
Q ss_pred HHHhhhh--------------------hcccCChHHH-HHHHHhcCCCCCCCchHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 041151 298 EIYKIAS--------------------IALSPNVPAQ-IFMGLMVNPLKPGDISYEQFVR-ESKGILESLRRRARMMTDG 355 (463)
Q Consensus 298 ~l~~~~~--------------------~~~~~~~~~q-~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 355 (463)
....... ...+++.+.. ..+..++ ..... -.+...++.+++.+++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~ 294 (377)
T d1vjoa_ 225 KLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREAL----------RLIAQEGLANCWQRHQKNVEYLWER 294 (377)
T ss_dssp HHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHH----------HHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCCCCcceeeccchhhhccCcccccccccceechhhhHHHH----------hhhhhcCchHHHHHHHHHhhhhhhh
Confidence 5543211 0111222222 2222221 11111 1355677778888889998
Q ss_pred hhcCCCcccccCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe-c-
Q 041151 356 FNSCRNVVCNFTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI-L- 430 (463)
Q Consensus 356 L~~~pg~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~-~- 430 (463)
+... ++....+. ....+. +.+|++. +..+++..+++++||.+..|...- ..+.+|||. +
T Consensus 295 l~~~-~~~~~~~~~~rs~~v~~--~~~p~~~----------~~~~l~~~L~~~~gI~v~~G~~~~---~~~~~Ris~~g~ 358 (377)
T d1vjoa_ 295 LEDI-GLSLHVEKEYRLPTLTT--VCIPDGV----------DGKAVARRLLNEHNIEVGGGLGEL---AGKVWRVGLMGF 358 (377)
T ss_dssp HHHT-TCCBSSCGGGBCSSEEE--EECCTTC----------CHHHHHHHHHHHHCEECEECCGGG---TTTEEEEECCGG
T ss_pred hhcc-CceeecChHhcCCeEEE--EECCCCC----------CHHHHHHHHHhcCCEEEecCcccc---cCCEEEEecCcC
Confidence 8876 54443222 112222 2344432 356666777788999998877532 224799994 5
Q ss_pred -CCcCcHHHHHHHHHHHHH
Q 041151 431 -PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 431 -~~~e~i~~~~~~l~~~l~ 448 (463)
.+.||+++++++|+++++
T Consensus 359 ~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 359 NSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp GCSHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 578899999999998873
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.70 E-value=3.8e-16 Score=154.25 Aligned_cols=299 Identities=12% Similarity=0.077 Sum_probs=182.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCcc---CC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-----
Q 041151 82 PADAIARAKHYLSLTSGGLGAY---SD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI----- 151 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y---~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----- 151 (463)
|..+++++.+.+.+...+...- .. ..-...+|+.+|++++ +++++|++|+|+++++..++....
T Consensus 40 p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llg------a~~~ei~~~~~~T~~~~~~~~~~~~~~~~ 113 (404)
T d1qz9a_ 40 PVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG------ARDGEVVVTDTTSINLFKVLSAALRVQAT 113 (404)
T ss_dssp BTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT------CCTTSEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhC------CCCCcEEEecCchHHHHHHhhhhhhhhcc
Confidence 7889999988876532111110 00 1122368888888887 889999999999999988765321
Q ss_pred cCCCCEEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 152 RGEGDGVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 152 ~~~gd~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
..+++.|++. .+.++ .......+. +.+++++++ ++++|.+++.+|.||..++ +
T Consensus 114 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~------~T~lV~i~~v~~~tG~~~p---v 183 (404)
T d1qz9a_ 114 RSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSP-EELPQAIDQ------DTAVVMLTHVNYKTGYMHD---M 183 (404)
T ss_dssp HSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSG-GGHHHHCST------TEEEEEEESBCTTTCBBCC---H
T ss_pred cCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccc-hhHHHhcCC------CceEEEEecccccccceec---H
Confidence 2578887776 11112 233445677 888888887 8999999999999999999 7
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|+++|+++++.+++|.+++.... +..+... . ..+++.|.+|++++ +..-+|+++. ++.
T Consensus 184 ~~i~~~~~~~~~~~~vD~~q~~g~~-----~~~~~~~--------~---~d~~~~s~~K~~~~-~~g~~g~~~~---~~~ 243 (404)
T d1qz9a_ 184 QALTALSHECGALAIWDLAHSAGAV-----PVDLHQA--------G---ADYAIGCTYKYLNG-GPGSQAFVWV---SPQ 243 (404)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTS-----CCCHHHH--------T---CSEEEECSSSTTCC-CTTCCCEEEE---CTT
T ss_pred HHHhccccccccceeEEeecccccc-----ccccccc--------c---ceEEEEechhhccc-CCceEEEEEe---chh
Confidence 7778888899999999999986433 2344433 2 23688899998733 3333677774 554
Q ss_pred HHHHHHhhhh------------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHH--
Q 041151 295 TVDEIYKIAS------------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRR-- 348 (463)
Q Consensus 295 ~~~~l~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 348 (463)
..+.+..... .....+..........+.... ... ...+++.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~i~~~~~~~~~ 314 (404)
T d1qz9a_ 244 LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFA--QTD-------MASLRRKSLALTD 314 (404)
T ss_dssp TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHT--TSC-------HHHHHHHHHHHHH
T ss_pred hhhhCCccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHH--Hhh-------HHHHHHHHHHhHH
Confidence 4433321100 011222223222222211000 000 11222222332
Q ss_pred -HHHHHHHhhcCCCcccccCC-----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 041151 349 -ARMMTDGFNSCRNVVCNFTE-----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422 (463)
Q Consensus 349 -~~~l~~~L~~~pg~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 422 (463)
...+...+...+|++++.|. ++...+ ..+. ..+ +.+.|.++||.+... ..
T Consensus 315 ~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf---~~~~-------------~~~-v~~~L~~~gi~~~~r-------~~ 370 (404)
T d1qz9a_ 315 LFIELVEQRCAAHELTLVTPREHAKRGSHVSF---EHPE-------------GYA-VIQALIDRGVIGDYR-------EP 370 (404)
T ss_dssp HHHHHHHHHHTTSCCEECSCSSGGGBCSEEEE---ECTT-------------HHH-HHHHHHTTTEECEEE-------TT
T ss_pred HHHHHHHhhccCCCEEEECCCCccceeeEEEE---ecCC-------------HHH-HHHHHHHCCCEEeec-------CC
Confidence 33344444455688877553 344332 3332 233 456678899965321 12
Q ss_pred cEEEEEec---CCcCcHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL---PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 423 ~~lRis~~---~~~e~i~~~~~~l~~~l~~ 449 (463)
+.||||++ ++++|++++++.|++++++
T Consensus 371 ~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 371 RIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 37999985 7899999999999999875
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=3.4e-15 Score=149.42 Aligned_cols=304 Identities=8% Similarity=0.018 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cCCCCEEEEc-------------cCcee-------c
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RGEGDGVVLL-------------FHTTW-------K 167 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~~gd~Vlvp-------------~g~~~-------~ 167 (463)
..+...+.+++.+..|.+-....++.+.|+..++..++.++- ..+++.|++| .|..+ .
T Consensus 93 ~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~ 172 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLE 172 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeecc
Confidence 457777888887777866444444444444445555555442 2567889998 56554 3
Q ss_pred CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccc
Q 041151 168 RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVS 247 (463)
Q Consensus 168 ~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~ 247 (463)
.+.+.+|+ ++|++++++.... ++.+|++++|+|++|.+-+ +++|+++|++||+++++|++|+..... ...
T Consensus 173 ~~~~~id~-~~l~~~i~~~~~~--~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~----~~~ 242 (445)
T d3bc8a1 173 GDELRTDL-KAVEAKIQELGPE--HILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSK----CMH 242 (445)
T ss_dssp TTEEECCH-HHHHHHHHHHCGG--GEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHH----HHH
T ss_pred CcccccCH-HHHHHHHHhcccc--CeEEEEEeCCCCCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhh----ccc
Confidence 55688999 9999999874222 5788889999999999866 888888999999999999999854220 001
Q ss_pred hHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCC
Q 041151 248 SKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKP 326 (463)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~ 326 (463)
.......+ .. -.++..|.+|++ +.|. ..|++++ .+...++.+..... .........+.+....+
T Consensus 243 ~~~~~~~~----~~--vd~~~~s~hK~~-~~p~-g~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 307 (445)
T d3bc8a1 243 LIQQGARV----GR--IDAFVQSLDKNF-MVPV-GGAIIAG--FNEPFIQDISKMYPGRASASPSLDVLITLLSL----- 307 (445)
T ss_dssp HHHHHHHH----SC--CCEEEEEHHHHH-SCCS-SCEEEEE--SCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHH-----
T ss_pred cchhccCc----CC--cceEEecCcccc-ccCC-CCceeee--CChHHHHHHHHHHhhcccCcchHHHHHHHHHH-----
Confidence 11111122 11 126788999988 4333 3666765 57777777765544 11121222222222221
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcccc-cCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHH
Q 041151 327 GDISYEQFVRESKGILESLRRRARMMTDGFNSC---RNVVCN-FTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRL 402 (463)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 402 (463)
.........+...++.+++.+.|.++ -|..+. .+......+..+...... ...+.......
T Consensus 308 -------g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~--------~~~~~~~l~~~ 372 (445)
T d3bc8a1 308 -------GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGH--------HDKAVTQLGSM 372 (445)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSS--------SSCHHHHHHHH
T ss_pred -------hhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeecccc--------CCCCHHHHHHH
Confidence 11112334444455555666655543 144433 233334444333322110 01122233445
Q ss_pred HHhcCeEee----CCC----------CCCCC---CCCcEEEEEec--CCcCcHHHHHHHHHHHHHHHHHH
Q 041151 403 LEATGISTV----PGS----------GFGQK---EGIFHLRTTIL--PAEEDMPAIMESFKKFNDEFMEQ 453 (463)
Q Consensus 403 l~~~gI~v~----pg~----------~f~~~---~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~~~~~ 453 (463)
|.+.||... ++. .|+.. ....++|++++ ++++|++.++++|++++++++|+
T Consensus 373 L~~~gI~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk~ 442 (445)
T d3bc8a1 373 LFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 442 (445)
T ss_dssp HHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcceeeccccccchhhhhhhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 667777322 111 12211 12346999988 78899999999999999999875
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=4.7e-15 Score=144.11 Aligned_cols=270 Identities=11% Similarity=0.093 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cC--------------ceecCCCcc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FH--------------TTWKRQQIG 172 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g--------------~~~~~~~~~ 172 (463)
..|.+.+++.. ..+..+++++|+.|+..++.+++ ++||+|+++ || +++ .....
T Consensus 61 ~~le~~la~LE--------g~~~a~~~~SGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~-~~~d~ 130 (391)
T d1cl1a_ 61 FSLQQAMCELE--------GGAGCVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTT-SWFDP 130 (391)
T ss_dssp HHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEE-EEECT
T ss_pred HHHHHHHHHHh--------CCccEEEeccccceeeehhhccc-CCCCeEEEecccccchhhhhhhccccccccc-ccccC
Confidence 35555555554 25778899999999999999998 899999997 33 333 00111
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh--CCeEEEecccccccccCCCCCccchHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ--ENLVLLGDEVYQQNIYQDERPFVSSKK 250 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~--~~~~vi~Deay~~~~~~~~~~~~~~~~ 250 (463)
.|. +.+++++++ ++++|++.+|.||+..+.+ +++|+++|++ +|+++++|+.++...+ .. ++ .
T Consensus 131 ~d~-~~~~~~i~~------~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~---~~--Pl-~ 194 (391)
T d1cl1a_ 131 LIG-ADIVKHLQP------NTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL---FK--AL-D 194 (391)
T ss_dssp TCG-GGGGGTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS---SC--GG-G
T ss_pred ccc-ccccccccc------ccceeeecccCcccccccc---cHHHHHHHHhccCCcEEEEeccccchhh---hc--cc-c
Confidence 356 778887776 8999999999999999988 5556666644 5999999999976433 11 22 1
Q ss_pred HHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 251 VLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 251 ~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
+ +. .|++.|.||.++|....-.|.++ .+++....+..... .....++.....+..-++
T Consensus 195 ----~----Ga---DivvhS~TKy~~GhsdvlgG~vv---~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~------- 253 (391)
T d1cl1a_ 195 ----F----GI---DVSIQAATKYLVGHSDAMIGTAV---CNARCWEQLRENAYLMGQMVDADTAYITSRGLR------- 253 (391)
T ss_dssp ----G----TC---SEEEEETTTTTTCSSSCCCEEEE---ECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHT-------
T ss_pred ----c----cc---ceEEeecchhcccccccccccee---ccccccccchhhhhcccccCCchhhhhhhccch-------
Confidence 1 22 28999999999777777788777 47777777766654 445556665555554443
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccc-cC-----------------CceeEEeeeccCChhhHHHHhhcC
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCN-FT-----------------EGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~-~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
.+.-+.++..++...+.+.|++.|.+..+ .| .||.+.+ .+....
T Consensus 254 -------TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf-~l~~~~---------- 315 (391)
T d1cl1a_ 254 -------TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSF-VLKKKL---------- 315 (391)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEE-EESSCC----------
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCCcceee-eecCCC----------
Confidence 23335556788888999999988765432 11 1333332 133211
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCC----------------------CCCcEEEEEecCCcCcHHHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQK----------------------EGIFHLRTTILPAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~----------------------~~~~~lRis~~~~~e~i~~~~~~l~~~l~~ 449 (463)
+.+.+.+.+..-.+ +..+..+|.. -..+.||||++. |+.+.+++.|.+++++
T Consensus 316 ---~~e~~~~f~d~L~l-~~~a~SlG~~~SLi~~~~~~~~~~~~~~~~~gi~~~liRlSVGl--Ed~eDLi~Dl~~AL~~ 389 (391)
T d1cl1a_ 316 ---NNEELANYLDNFSL-FSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGL--EDVDDLIADLDAGFAR 389 (391)
T ss_dssp ---CHHHHHHHHTTCSS-CBCCSCCCSSSCEEEEECHHHHHHTSTTCCCCCCSCEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHcCCc-ceEeeCCCCCccceeCCcccccccCCchHhcCCCcCEEEEEecc--CCHHHHHHHHHHHHHh
Confidence 22223344443333 2223333320 013579999996 6888899999888876
Q ss_pred H
Q 041151 450 F 450 (463)
Q Consensus 450 ~ 450 (463)
+
T Consensus 390 i 390 (391)
T d1cl1a_ 390 I 390 (391)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.68 E-value=2.8e-15 Score=147.07 Aligned_cols=305 Identities=12% Similarity=0.093 Sum_probs=186.6
Q ss_pred CCCCcHHHHHHHHHHhhhcCCCCCccCC--CCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCC
Q 041151 78 GIVFPADAIARAKHYLSLTSGGLGAYSD--SRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGE 154 (463)
Q Consensus 78 ~~~~p~~~~~a~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~ 154 (463)
|.-+++++++++... ..++++. .+-+.++|+.++++++ ++.. .|+++.|++.+++.++..++ .+
T Consensus 25 P~~~~~~V~~Am~~~------~~~hr~~ef~~i~~~~r~~L~~ll~------~~~~~~i~~~gsgT~a~ea~~~~l~-~~ 91 (388)
T d2ch1a1 25 PSNCSKRVLTAMTNT------VLSNFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLL-EE 91 (388)
T ss_dssp SCCCCHHHHHHTTSC------CCCTTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHC-CT
T ss_pred CCCCCHHHHHHhCcC------CCCCCCHHHHHHHHHHHHHHHHHhC------CCCCeEEEEcCcHHHHHHHHHHHhc-cc
Confidence 344588888775322 2233332 1122456666666664 4434 56667789999999999998 89
Q ss_pred CCEEEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHH
Q 041151 155 GDGVVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLR 215 (463)
Q Consensus 155 gd~Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~ 215 (463)
|+.|++. ++... .......+. +..++..... +++++.+++-+|.||...+ ++
T Consensus 92 ~~~vl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~v~~~~~~t~tG~~~~---~~ 162 (388)
T d2ch1a1 92 GDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSL-ETLARAIELH-----QPKCLFLTHGDSSSGLLQP---LE 162 (388)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCH-HHHHHHHHHH-----CCSEEEEESEETTTTEECC---CT
T ss_pred cccccccccccccccchhhhhhhcccccccccccccccch-hhhhhhhccC-----Ccceeeeeecccccccccc---hh
Confidence 9999886 33333 445566677 7777776665 8999999999999999988 56
Q ss_pred HHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhH
Q 041151 216 EILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT 295 (463)
Q Consensus 216 ~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~ 295 (463)
+|.++|++++.++++|.+.+.... +..+ ++++..+++.|-.|++.|.+| +|++++ +++.
T Consensus 163 ~i~~~~~~~~~~~~vD~~ss~g~~-----pid~-----------~~~~~d~~~~s~~K~~~gp~G--~g~~~~---~~~~ 221 (388)
T d2ch1a1 163 GVGQICHQHDCLLIVDAVASLCGV-----PFYM-----------DKWEIDAVYTGAQKVLGAPPG--ITPISI---SPKA 221 (388)
T ss_dssp THHHHHHHTTCEEEEECTTTBTTB-----CCCT-----------TTTTCCEEECCCC-CCCCCSS--CEEEEE---CHHH
T ss_pred hhcchhccccceeeeeeeeccccc-----ccch-----------hccCceEEEEccccccCCCCe--EEEEec---cHHH
Confidence 667788899999999999986432 1222 333445888999999877777 677774 7766
Q ss_pred HHHHHhhhh------------------------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHH
Q 041151 296 VDEIYKIAS------------------------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE-SKGILESLRRRAR 350 (463)
Q Consensus 296 ~~~l~~~~~------------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 350 (463)
++.+..... ....++.....++...++ ..... ......+.++...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~----------~~~~~~~~~~~~~~~~~~~ 291 (388)
T d2ch1a1 222 LDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALA----------QIAEEGLENQIKRRIECAQ 291 (388)
T ss_dssp HHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHH----------HHHHHCHHHHHHHHHHHHH
T ss_pred HHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHH----------HHHHhhhHHHHHHHHHHHH
Confidence 665543211 011222222222222221 11111 2223333344444
Q ss_pred HHHHHhhcCCCcccccCC----ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEE
Q 041151 351 MMTDGFNSCRNVVCNFTE----GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLR 426 (463)
Q Consensus 351 ~l~~~L~~~pg~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lR 426 (463)
.....+... ++....++ ....+. +.+|+++ +..++...+++++||.+.+|..... ...+|
T Consensus 292 ~~~~~~~~~-~~~~~~~~~~~rs~~v~~--~~~p~g~----------~~~~l~~~l~~~~gI~v~~G~~~~~---~~~~R 355 (388)
T d2ch1a1 292 ILYEGLGKM-GLDIFVKDPRHRLPTVTG--IMIPKGV----------DWWKVSQYAMNNFSLEVQGGLGPTF---GKAWR 355 (388)
T ss_dssp HHHHHHHHH-TCCBSSCSGGGBCTTEEE--EECCTTC----------CHHHHHHHHHHHHCBCCBCCCGGGT---TTEEE
T ss_pred HHHhhhhhc-ccccccCCHHHhCCeEEE--EECCCCC----------CHHHHHHHHhhcCCEEEeCCCcccc---CCEEE
Confidence 445545443 22222211 112222 3455442 3456666777888999999865322 23799
Q ss_pred EE-ec--CCcCcHHHHHHHHHHHHHHHH
Q 041151 427 TT-IL--PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 427 is-~~--~~~e~i~~~~~~l~~~l~~~~ 451 (463)
|| ++ ++.|+++.+++.|+++|+...
T Consensus 356 Is~~g~~~t~edI~~ll~alke~L~~~~ 383 (388)
T d2ch1a1 356 VGIMGECSTVQKIQFYLYGFKESLKATH 383 (388)
T ss_dssp EECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred EcCCcCCCCHHHHHHHHHHHHHHHHhhC
Confidence 99 66 567899999999999988743
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.68 E-value=6.3e-15 Score=140.40 Aligned_cols=199 Identities=10% Similarity=0.120 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCc--------------eecCCCccc
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHT--------------TWKRQQIGV 173 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~--------------~~~~~~~~~ 173 (463)
.|.+.+|+..+ .+..+++++|+.|+..++.+++ ++||+|+++ ||+ ++. .-..-
T Consensus 2 aLE~~la~Leg--------~~~a~~~sSGMaAi~~~l~~ll-~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~-~~d~~ 71 (331)
T d1pffa_ 2 ALEGKIAKLEH--------AEACAATASGMGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVD-FIDMA 71 (331)
T ss_dssp HHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEE-EECTT
T ss_pred HHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEE-Eeccc
Confidence 57788888864 5778888999999999999998 999999997 433 330 01112
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH-hhhCCeEEEecccccccccCCCCCccchHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF-CYQENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~-a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
|. +.+++++++ ++++|++.+|.||+..+.+ +++++++ ++++++++|+|+.++...+ ..+..
T Consensus 72 d~-~~~~~~i~~------~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~---~~pl~----- 133 (331)
T d1pffa_ 72 VP-GNIEKHLKP------NTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPIL---TNPLD----- 133 (331)
T ss_dssp ST-THHHHTCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHH---CCGGG-----
T ss_pred ch-hhHhhhccc------ccceeeeeccccccccccc---chhhhhhhhcccCceEEeecccccccc---ccccc-----
Confidence 67 888888887 8999999999999999988 4445555 4678999999999986443 11111
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh--hh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI--AS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
+ +. .|++.|.+|.++|....-.|.++ .+++........ .. .....++.....+..-
T Consensus 134 --~----Ga---DiVv~S~TKy~~Gh~d~~~G~v~---~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rg--------- 192 (331)
T d1pffa_ 134 --L----GV---DIVVHSATKYINGHTDVVAGLVC---SRADIIAKVKSQGIKDITGAIISPHDAWLITRG--------- 192 (331)
T ss_dssp --G----TC---SEEEEETTTTTSSSSSCCCEEEE---ECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHH---------
T ss_pred --c----CC---CEEEecchhhcCCCCcccccccc---ccccchhhhhhhhhhhccCCCCCHHHHHHHHHH---------
Confidence 1 22 28999999999777777778887 466665554332 22 2344444444444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
++.+..+.++..++...+.+.|++.|.++
T Consensus 193 -----l~Tl~~Rm~~~~~nA~~lA~~L~~hp~V~ 221 (331)
T d1pffa_ 193 -----TLTLDMRVKRAAENAQKVAEFLHEHKAVK 221 (331)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhhhCCcEE
Confidence 34444566777888999999999887663
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=4e-15 Score=145.35 Aligned_cols=296 Identities=14% Similarity=0.121 Sum_probs=185.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHH-hcCCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCV-IRGEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-~~~~gd~Vlv 160 (463)
+++.++++.+.+.+ . .|.......++++.+|++++ .+.++.+++++.|+..++.++ + ++||+|++
T Consensus 11 ~~~~~~~~~~~~~~---~--~~~~G~~v~~~E~~la~~~g--------~~~ai~~~sgt~Al~~al~al~~-~~gdeVi~ 76 (376)
T d1mdoa_ 11 GAEELAAVKTVLDS---G--WITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGI-GEGDEVIT 76 (376)
T ss_dssp CHHHHHHHHHHHHH---T--CCSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTC-CTTCEEEE
T ss_pred CHHHHHHHHHHHhc---C--CCcCCHHHHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHhCC-CCCCEEEE
Confidence 77888888888887 2 23322245789999999985 356777778899999999998 5 89999999
Q ss_pred c-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 161 L-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 161 p-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
| .|.++ ..+.+.+|+ +.|++++++ ++++|++++ ..|...+ +++|.++|+
T Consensus 77 ~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d~-~~l~~~i~~------~tkaIi~~h---~~G~~~~---~~~i~~i~~ 143 (376)
T d1mdoa_ 77 PSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTP-EHIEAAITP------QTKAIIPVH---YAGAPAD---LDAIYALGE 143 (376)
T ss_dssp ESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCH-HHHHHHCCT------TEEEECCBC---GGGCCCC---HHHHHHHHH
T ss_pred ecccccccccchhccccceeeecccccccCCCH-HHHHHhcCC------CCeEEEEeC---CCCCccc---hhHHHHHHH
Confidence 8 66666 345688999 999999987 899998764 5677666 667777888
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
++|++||+|++++....-.+.. . ...+. .+.|| +|.+ + ....|.+++ .++++.++++
T Consensus 144 ~~~i~vIeD~a~a~g~~~~~~~---~-----------g~~g~--~~~Sf~~~K~l-~--~g~GG~i~t--~~~~l~~~~~ 202 (376)
T d1mdoa_ 144 RYGIPVIEDAAHATGTSYKGRH---I-----------GARGT--AIFSFHAIKNI-T--CAEGGIVVT--DNPQFADKLR 202 (376)
T ss_dssp HHTCCBCEECTTCTTCEETTEE---T-----------TSSSE--EEEECCTTSSS-C--SSSCEEEEE--SCHHHHHHHH
T ss_pred hcCceEEeccchhccCeeCCee---c-----------ccccC--ccccCCCcCCC-C--CCCCCEEEE--echhHHHHHH
Confidence 9999999999998643211111 1 12222 34455 5877 4 334788876 5788888887
Q ss_pred hhhhhcccCC------------------------hHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041151 301 KIASIALSPN------------------------VPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF 356 (463)
Q Consensus 301 ~~~~~~~~~~------------------------~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 356 (463)
.+........ .-.|.+.... .+..+++..++.+++.+.+.+.|
T Consensus 203 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai~~~-------------qL~~~~~~~~~r~~~~~~~~~~L 269 (376)
T d1mdoa_ 203 SLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALA-------------QLQKLDALNARRAAIAAQYHQAM 269 (376)
T ss_dssp HHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHH-------------HHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCCcccccccccccccccccchhcccccccchhhhhhhhh-------------hhhhhhHHHHHHhhhhhhhhhhc
Confidence 6653211110 1122222111 23334556666777788888888
Q ss_pred hcCCCcccccCCc----eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCC-----------CCCC-
Q 041151 357 NSCRNVVCNFTEG----AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGF-----------GQKE- 420 (463)
Q Consensus 357 ~~~pg~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f-----------~~~~- 420 (463)
+++++..+..+.. .++.++ +..+... . ..+.+.+.+.|+++||.+++.... ....
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~--~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~ 340 (376)
T d1mdoa_ 270 ADLPFQPLSLPSWEHIHAWHLFI-IRVDEAR------C--GITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTL 340 (376)
T ss_dssp HTSSCEECCCCSSCEECCCSCEE-EECCHHH------H--SSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCC
T ss_pred ccccccccccccccccccccccc-ccccccc------c--hhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCC
Confidence 8875554433321 111211 1111110 0 011223456678899988753210 0000
Q ss_pred ------CCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 421 ------GIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 421 ------~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
....+.|-+. .+++|++..++.|++++
T Consensus 341 p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 341 PDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp HHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0234555444 68899999999998875
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.67 E-value=1.7e-14 Score=140.20 Aligned_cols=268 Identities=13% Similarity=0.158 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCc--------------eecCCCccc
Q 041151 111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHT--------------TWKRQQIGV 173 (463)
Q Consensus 111 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~--------------~~~~~~~~~ 173 (463)
.|.+.|++.. ..+..+++++++.|+..++.+++ .+||.|+++ +|+ .+ ..-..-
T Consensus 63 ~le~~la~LE--------g~~~a~~~sSGmaAi~~~~l~l~-~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~-~~~d~~ 132 (394)
T d1e5ea_ 63 NLEGKIAFLE--------KTEACVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHALTKFGIQV-DFINTA 132 (394)
T ss_dssp HHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEE-EEECTT
T ss_pred HHHHHHHHHh--------CCcceeeeccchHHHHHHHHhhc-ccccccccccceeehhhHhHHHHhhccceee-eccCCC
Confidence 4555555544 25678888888999999999998 899999997 333 22 111123
Q ss_pred ChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh-hCCeEEEecccccccccCCCCCccchHHHH
Q 041151 174 LIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY-QENLVLLGDEVYQQNIYQDERPFVSSKKVL 252 (463)
Q Consensus 174 d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~-~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 252 (463)
|. +++++++++ ++++|++..|.|||..+.+ ++++++.++ ++++++|+|..|+...+ .. ++ .
T Consensus 133 d~-~~~~~~i~~------~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~---~~--Pl-~-- 194 (394)
T d1e5ea_ 133 IP-GEVKKHMKP------NTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMI---TN--PV-D-- 194 (394)
T ss_dssp ST-THHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTT---CC--GG-G--
T ss_pred CH-HHHHHhhcc------cccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCccc---CC--ch-h--
Confidence 56 888888887 8999999999999999988 555655554 56899999999975433 11 22 1
Q ss_pred HhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh--hh-hcccCChHHHHHHHHhcCCCCCCCc
Q 041151 253 MDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI--AS-IALSPNVPAQIFMGLMVNPLKPGDI 329 (463)
Q Consensus 253 ~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~--~~-~~~~~~~~~q~~~~~~l~~~~~~~~ 329 (463)
+ +. .|+++|.||.++|...+-.|.++ ++.+.+...+.. +. .....++.....+..-|+
T Consensus 195 --~----Ga---DiVvhS~TKy~~GhsDv~~G~v~---~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~------- 255 (394)
T d1e5ea_ 195 --F----GV---DVVVHSATKYINGHTDVVAGLIC---GKADLLQQIRMVGIKDITGSVISPHDAWLITRGLS------- 255 (394)
T ss_dssp --G----TC---SEEEEETTTTTTCSSCCCCEEEE---ECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT-------
T ss_pred --c----CC---CEEEechhhhcCCCccccccccc---chhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhch-------
Confidence 1 22 28999999999777777788777 477776655432 33 344455665555555543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc-cccC-----------------CceeEEeeeccCChhhHHHHhhcC
Q 041151 330 SYEQFVRESKGILESLRRRARMMTDGFNSCRNVV-CNFT-----------------EGAMYSFPQIRLPPKAIEAAKRAG 391 (463)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~-~~~~-----------------~g~~~~~~~~~~~~~~~~~~~~~~ 391 (463)
.+.-+.++..++...+.+.|++.|.++ +..| .|+++.+. +. .
T Consensus 256 -------TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~-~~--~---------- 315 (394)
T d1e5ea_ 256 -------TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFI-LK--S---------- 315 (394)
T ss_dssp -------THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEE-ET--T----------
T ss_pred -------hHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCCeeeee-cc--C----------
Confidence 233456667888999999999887653 2222 24555542 22 1
Q ss_pred CCChHHHHHHHHHhcCeEeeCCCCCCCCC------------------------CCcEEEEEecCCcCcHHHHHHHHHHHH
Q 041151 392 KVPDVFYCLRLLEATGISTVPGSGFGQKE------------------------GIFHLRTTILPAEEDMPAIMESFKKFN 447 (463)
Q Consensus 392 ~~~~~~~~~~ll~~~gI~v~pg~~f~~~~------------------------~~~~lRis~~~~~e~i~~~~~~l~~~l 447 (463)
+.+.+.++++.-.+. ..+..+|... .++.||||++. |+.+.+++.|.+++
T Consensus 316 ---~~~~a~~f~~~l~l~-~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~Gi~~~liRlSVGl--Ed~eDLi~Dl~qAl 389 (394)
T d1e5ea_ 316 ---GFEGAKKLLDNLKLI-TLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGL 389 (394)
T ss_dssp ---HHHHHHHHHHTCSSS-EESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHhCCcc-ceeeccCCccceeECccccccccCCHHHHHhcCCCcCEEEEEecc--CCHHHHHHHHHHHH
Confidence 223344556555542 2233333210 13489999996 68889999999988
Q ss_pred HHHH
Q 041151 448 DEFM 451 (463)
Q Consensus 448 ~~~~ 451 (463)
+.+.
T Consensus 390 ~~l~ 393 (394)
T d1e5ea_ 390 DALL 393 (394)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8764
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=2.3e-15 Score=146.15 Aligned_cols=300 Identities=10% Similarity=0.089 Sum_probs=183.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCc--EEEcCCcHHHHHHHHHHHhcCCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPEL--IFLTDGASKGVMQTLNCVIRGEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~~~~gd~Vl 159 (463)
|+.+++++.....+ ....| ...-..+.|+.++++++ ++++. |++|+|+|++++.++..+. .+++.++
T Consensus 12 ~~~V~~A~~~~~~~---~~~~~-~~~~~~~~r~~l~~l~~------~~~~~~~i~~t~s~T~~~~~~~~~l~-~~~~~~~ 80 (361)
T d1m32a_ 12 SRTVKEAMLFDSCT---WDDDY-NIGVVEQIRQQLTALAT------ASEGYTSVLLQGSGSYAVEAVLGSAL-GPQDKVL 80 (361)
T ss_dssp CHHHHHTTCCCCCT---TSHHH-HTTTHHHHHHHHHHHHC------SSSSEEEEEEESCHHHHHHHHHHHSC-CTTCCEE
T ss_pred CHHHHHHhhhhccC---CCcHH-HHHHHHHHHHHHHHHhC------CCCCCEEEEECCCHHHHHHHHHHHhh-hhccccc
Confidence 77777765322111 11111 13345788999999886 55554 7778889999999999997 7777666
Q ss_pred Ec---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHH
Q 041151 160 LL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRF 220 (463)
Q Consensus 160 vp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~ 220 (463)
+. .+... .......+. +........ .++++++.+++-+|-||...+ +++|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~v~~~~~~~~tG~~~~---i~~i~~~ 152 (361)
T d1m32a_ 81 IVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDV-QAIDAILNA----DPTISHIAMVHSETTTGMLNP---IDEVGAL 152 (361)
T ss_dssp EEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCH-HHHHHHHHH----CTTCCEEEEESEETTTTEECC---HHHHHHH
T ss_pred eeeehhhhhhHHHHhhhhhcccccccccccCCccc-hhhHHHHHh----ccCccceEEEeeecccccchh---hhhhhhh
Confidence 64 11111 222222222 222222111 127999999999999999998 6777888
Q ss_pred hhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 221 CYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 221 a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
|+++|+++++|.+++.... +..+ ++.+..+++.|..|++.|.+| +|++++ +++..+...
T Consensus 153 ~~~~g~~~~vDa~qs~G~~-----~~d~-----------~~~~~D~~~~s~~K~l~gp~G--~g~l~~---~~~~~~~~~ 211 (361)
T d1m32a_ 153 AHRYGKTYIVDAMSSFGGI-----PMDI-----------AALHIDYLISSANKCIQGVPG--FAFVIA---REQKLAACK 211 (361)
T ss_dssp HHHHTCEEEEECTTTTTTS-----CCCT-----------TTTTCSEEEEESSSTTCCCSS--EEEEEE---EHHHHTTCT
T ss_pred hcccceeeEeecccccCcc-----cccc-----------cccccceEEeeecccccCCCC--ceEEEe---chhhhhhhc
Confidence 9999999999999986433 1222 233345888999999866678 777775 554443221
Q ss_pred h-----------------h-hh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Q 041151 301 K-----------------I-AS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRE--SKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 301 ~-----------------~-~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
. . .. ...+++.....++...+. ....+ ......+.+...+.+.+.++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (361)
T d1m32a_ 212 GHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALK----------ELAKEGGVAARHQRYQQNQRSLVAGMRAL 281 (361)
T ss_dssp TCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccchhhhccccccccccCCCCCchhhhHHHHHHH----------HHHHhcchhhhHHHHHHHHHHHHHHHhhc
Confidence 1 1 11 234455555555555442 12222 2344555666677788887776
Q ss_pred CCcccccCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcC
Q 041151 360 RNVVCNFTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEE 434 (463)
Q Consensus 360 pg~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e 434 (463)
|+....+. +...+. +..|... ..+...+...|.++||.+.+|.... .+.+|||.. .+++
T Consensus 282 -g~~~~~~~~~rs~~v~~--~~~p~~~---------~~~~~~~~~~l~~~gi~i~~G~~~~----~~~~Ris~~g~~~~~ 345 (361)
T d1m32a_ 282 -GFNTLLDDELHSPIITA--FYSPEDP---------QYRFSEFYRRLKEQGFVIYPGKVSQ----SDCFRIGNIGEVYAA 345 (361)
T ss_dssp -TCCBSSCGGGBCSSEEE--EECCCCT---------TCCHHHHHHHHHHTTEECEECCCSS----SCEEEEECCSSCCHH
T ss_pred -CCcccCChhhcCCcEEE--EECCCCC---------CCCHHHHHHHHHHCCcEEECCCcCC----CCEEEEeCCCCCCHH
Confidence 55543332 222222 2334320 1133345567888999998886432 237999953 7889
Q ss_pred cHHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKFN 447 (463)
Q Consensus 435 ~i~~~~~~l~~~l 447 (463)
|+++++++|+++|
T Consensus 346 di~~lv~al~~~L 358 (361)
T d1m32a_ 346 DITALLTAIRTAM 358 (361)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999875
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.65 E-value=3.7e-15 Score=148.70 Aligned_cols=279 Identities=12% Similarity=0.066 Sum_probs=167.1
Q ss_pred HHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEEc-------------cCcee-------cCCCcccChH
Q 041151 118 EFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVLL-------------FHTTW-------KRQQIGVLII 176 (463)
Q Consensus 118 ~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlvp-------------~g~~~-------~~~~~~~d~~ 176 (463)
.++.+..|. +....+++.|++.++..++.++-. .+++.|+++ .|..+ ....+.+|+
T Consensus 120 ~~~~~~~g~--~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~~~d~- 196 (434)
T d2z67a1 120 ESFFKQLGL--NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPV- 196 (434)
T ss_dssp HHHHHHTTC--CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCH-
T ss_pred HHHHHhcCC--CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCccCCCH-
Confidence 333344443 334556667777777777777631 378999998 45554 344577999
Q ss_pred HHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcC
Q 041151 177 NDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMG 256 (463)
Q Consensus 177 ~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 256 (463)
++|++.+++....+ ++.+|++++|++++|.+.+ +++|+++|++||+++++|++|+.... .. .........+
T Consensus 197 ~~l~~~i~~~~~~~-~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~--~~--~~~~~~~~~~- 267 (434)
T d2z67a1 197 EDIENAIKKEIELG-NRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNN--YY--LEKLKKAFKY- 267 (434)
T ss_dssp HHHHHHHHHHHHTT-CCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCH--HH--HHHHHHHHTS-
T ss_pred HHHHHHHHhhhhcC-CceEEEeccCcCCCccccC---HHHHHHHHHHhCCeEEEeccchhhhh--hc--cccccccccC-
Confidence 99999998754433 5678888899999999866 78888899999999999999975321 00 0011111111
Q ss_pred CCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhhh-cccCChHHHHHHHHhcCCCCCCCchHHHHH
Q 041151 257 LPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIASI-ALSPNVPAQIFMGLMVNPLKPGDISYEQFV 335 (463)
Q Consensus 257 ~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 335 (463)
+-.+++.|++|++.++.| .|++.+ .++++++.+.+.... ....+.....+....+ ..
T Consensus 268 ------~~D~~~~s~hK~l~~~~g--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~------------~~ 325 (434)
T d2z67a1 268 ------RVDAVVSSSDKNLLTPIG--GGLVYS--TDAEFIKEISLSYPGRASATPVVNTLVSLLSM------------GS 325 (434)
T ss_dssp ------CCSEEEEEHHHHHCCCSS--CEEEEE--SCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHH------------HH
T ss_pred ------CcceEEEcCccccccCCC--cccccc--CcHHHHHHHHhhcccccccchHHHHHHHHHHH------------HH
Confidence 123778999999843344 566665 678888887766541 2222222222222222 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee-
Q 041151 336 RESKGILESLRRRARMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV- 411 (463)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~- 411 (463)
...+...++..++.+++.+.|+++ .|..+........+.+.+.. +..+ +...|.+.||...
T Consensus 326 ~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~~--------------~~~~-l~~~L~~~gI~g~~ 390 (434)
T d2z67a1 326 KNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS--------------DPVE-IAAKLYNLRVTGPR 390 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECSS--------------CHHH-HHHHHHHTTEESCE
T ss_pred hcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCCCCceeeeecCC--------------CHHH-HHHHHHHcCCeeee
Confidence 223345555566667777766653 35665544333222222221 1333 3445677898543
Q ss_pred ---CCCCCCC----CCCCcEEEEEec--CCcCcHHHHHHHHHH
Q 041151 412 ---PGSGFGQ----KEGIFHLRTTIL--PAEEDMPAIMESFKK 445 (463)
Q Consensus 412 ---pg~~f~~----~~~~~~lRis~~--~~~e~i~~~~~~l~~ 445 (463)
+...++. .....++|++++ .+.|||+.++++|++
T Consensus 391 v~~~l~~~g~~~~~~~~~~~l~~~~s~~~T~edID~~i~~L~k 433 (434)
T d2z67a1 391 GIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEK 433 (434)
T ss_dssp EECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred hhhhccccCeeeecccCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 1111110 112358999998 799999999999975
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=8.3e-14 Score=135.93 Aligned_cols=200 Identities=12% Similarity=0.034 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCce--------------ecCCCcc
Q 041151 110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTT--------------WKRQQIG 172 (463)
Q Consensus 110 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~--------------~~~~~~~ 172 (463)
..|.+.|++..+ .+..+++++++.|+..++.+++ ++||+|+++ ||+. +..-+ .
T Consensus 61 ~~LE~~la~LE~--------~~~a~~~~SGmaAi~~~~~~l~-~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d-~ 130 (421)
T d2ctza1 61 DVLEKRLAALEG--------GKAALATASGHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS-R 130 (421)
T ss_dssp HHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC-T
T ss_pred HHHHHHHHHHhC--------CCeEEEecChHHHHHHHHHhhc-ccccceeecCCcCCchhHHHHHHHhhccccceecc-c
Confidence 355555555542 5678888888999999999998 899999998 3332 21111 1
Q ss_pred cChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccc-cccCCCCCccchHHH
Q 041151 173 VLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQ-NIYQDERPFVSSKKV 251 (463)
Q Consensus 173 ~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~ 251 (463)
.|..+..+..+++ ++++|++.+|.|||..+.+ +++|+++|+++|+++++|+.++. ... .. ++.
T Consensus 131 ~~~~~~~~~~~~~------~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~---~~--Pl~-- 194 (421)
T d2ctza1 131 EERPEEFLALTDE------KTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYL---LR--PLA-- 194 (421)
T ss_dssp TCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTS---CC--GGG--
T ss_pred ccCcchhccccCC------CceEEEEcCCCcceeEecc---hHHHHHHHHhcCCceEeccccccccee---cc--ccc--
Confidence 1220344444555 8999999999999999987 88888899999999999999973 221 11 221
Q ss_pred HHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh----------------------H---------HHHHH
Q 041151 252 LMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK----------------------T---------VDEIY 300 (463)
Q Consensus 252 ~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~----------------------~---------~~~l~ 300 (463)
+ +. .|+++|.||.++|....-.|.++. +.+ + +.+.+
T Consensus 195 ---~----Ga---DiVvhS~TKyl~GHsD~l~G~vv~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (421)
T d2ctza1 195 ---W----GA---ALVTHSLTKWVGGHGAVIAGAIVD---GGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261 (421)
T ss_dssp ---G----TC---SEEEEETTTTTTCSSCCCCEEEEE---CSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHH
T ss_pred ---c----CC---cEEEEechhhccCCCCeEEEEEEc---CCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHH
Confidence 1 22 289999999997777777777774 321 1 11111
Q ss_pred -hhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 301 -KIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 301 -~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
... ..+...++.....+..-|+ .+.-+.++..++...+.+.|++.|.+
T Consensus 262 ~~~~~~~G~~~sP~~a~l~~rgl~--------------TL~lRm~~~~~nA~~vA~~L~~hp~V 311 (421)
T d2ctza1 262 VDGLRDQGQALGPFEAWVVLLGME--------------TLSLRAERHVENTLHLAHWLLEQPQV 311 (421)
T ss_dssp HTHHHHHCCCCCHHHHHHHHHHHT--------------THHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred HHHHHhccCCCCHHHHHHHhcCCc--------------chhhHHHHHHHHHHHHHhhhccCCCe
Confidence 111 1344556666555555543 23345666788888999999987665
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=2e-14 Score=139.51 Aligned_cols=208 Identities=13% Similarity=0.137 Sum_probs=138.0
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc---cCcee-------c---
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---FHTTW-------K--- 167 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---~g~~~-------~--- 167 (463)
..|+.. |. +-++.+.+.+.... ..+..+++++++.|+..++ .++ .+||.|+++ +|... +
T Consensus 47 y~YsR~-gn-PT~~~lE~~la~LE----~~~~a~~~sSGmaAi~~~l-~~l-~~gd~iv~~~~~yg~t~~~~~~~l~~~g 118 (393)
T d1n8pa_ 47 YEYSRS-QN-PNRENLERAVAALE----NAQYGLAFSSGSATTATIL-QSL-PQGSHAVSIGDVYGGTHRYFTKVANAHG 118 (393)
T ss_dssp CCBTTT-CC-HHHHHHHHHHHHHT----TCSEEEEESCHHHHHHHHH-HTS-CSSCEEEEESSCCHHHHHHHHHTSTTTC
T ss_pred eeeeCC-CC-hHHHHHHHHHHHHh----CCceEEEecCchhHHHhhh-hcc-cCCCeeeeeeeecccchhhhhhhhhccc
Confidence 346543 33 34444444444332 2466677777799997665 555 789999987 44332 1
Q ss_pred --CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh----hCCeEEEecccccccccCC
Q 041151 168 --RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY----QENLVLLGDEVYQQNIYQD 241 (463)
Q Consensus 168 --~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~----~~~~~vi~Deay~~~~~~~ 241 (463)
..-...+. +++++++++ ++++|++.+|.||+..+.+ +++|+++|+ ++|+++|+|..|+...+
T Consensus 119 i~~~~~~~~~-~~~~~~i~~------~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~-- 186 (393)
T d1n8pa_ 119 VETSFTNDLL-NDLPQLIKE------NTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI-- 186 (393)
T ss_dssp SCCEEESSHH-HHHHHHSCS------SEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH--
T ss_pred ceeEEeecch-HHHHHHhhh------hcceeEecCcchhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCccc--
Confidence 11112345 778877776 8999999999999999988 555555555 78999999999976433
Q ss_pred CCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHh
Q 041151 242 ERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLM 320 (463)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~ 320 (463)
.. ++ . + +. .|++.|.+|.++|...+-.|.++. .++++.++++..+. .+...++.....+..-
T Consensus 187 -~~--Pl-~----~----GA---DiVvhS~TKyi~GhsDv~~G~v~~--~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rg 249 (393)
T d1n8pa_ 187 -SN--PL-N----F----GA---DIVVHSATKYINGHSDVVLGVLAT--NNKPLYERLQFLQNAIGAIPSPFDAWLTHRG 249 (393)
T ss_dssp -CC--GG-G----G----TC---SEEEEETTTTTTCSSCCCCEEEEE--SCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred -CC--ch-h----h----CC---CEEEEccccccCCCCccccceeee--cchhHHHHHHHHHhhcCCCCChHHHHHHHhC
Confidence 11 11 1 1 22 289999999998888888998875 56778888887775 4555666665555555
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 041151 321 VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC 359 (463)
Q Consensus 321 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 359 (463)
++ .+.-+.++..++...+.+.|+..
T Consensus 250 l~--------------Tl~lR~~~~~~nA~~lA~~L~~~ 274 (393)
T d1n8pa_ 250 LK--------------TLHLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HT--------------THHHHHHHHHHHHHHHHHHHTSC
T ss_pred Cc--------------chhhHHHHHHHHHHHHHHHHHhc
Confidence 43 23334555677778888888653
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=2.2e-15 Score=145.69 Aligned_cols=296 Identities=11% Similarity=0.095 Sum_probs=181.2
Q ss_pred CcHHHHHHHHHHhhhcCCCCCccCCC--CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEE
Q 041151 81 FPADAIARAKHYLSLTSGGLGAYSDS--RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGV 158 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y~~~--~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~V 158 (463)
+|+.+++++.+..- +..++. .-+.+.++.+++.++ .+.+.++++.|++.+++.++..++ .+|++|
T Consensus 11 v~~~V~~am~~~~~------~hr~~~f~~i~~~~~~~l~~ll~------~~~~~i~~~gsgT~a~e~~~~nl~-~~g~~v 77 (348)
T d1iuga_ 11 LHPKALEALARPQL------HHRTEAAREVFLKARGLLREAFR------TEGEVLILTGSGTLAMEALVKNLF-APGERV 77 (348)
T ss_dssp CCHHHHHHHHSCCC------CTTSHHHHHHHHHHHHHHHHHHT------CSSEEEEEESCHHHHHHHHHHHHC-CTTCEE
T ss_pred CCHHHHHHhcCCCC------CCCCHHHHHHHHHHHHHHHHHhC------CCCCEEEEeCchHHHHHHHHHhcc-cccccc
Confidence 38888887653221 122210 112344444444443 455678889999999999999998 899998
Q ss_pred EEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHH
Q 041151 159 VLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILR 219 (463)
Q Consensus 159 lvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~ 219 (463)
++. +|..+ ...+..++. +... ..+++++++++..+.||...+. ++|.+
T Consensus 78 lv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~~-~~~~---------~~~~~~v~~~h~eTstG~~~~i---~~i~~ 144 (348)
T d1iuga_ 78 LVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRP-EDVA---------KEGYAGLLLVHSETSTGALADL---PALAR 144 (348)
T ss_dssp EEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCT-TTSC---------CSSCSEEEEESEETTTTEECCH---HHHHH
T ss_pred eeecchHHHHHHHHHHHhcCcccccccccCCCcccc-cccc---------ccCCCeeEEEecchhhhhhccH---HHHHH
Confidence 886 33333 222333344 3321 1278999999999999999994 55555
Q ss_pred HhhhC--CeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH
Q 041151 220 FCYQE--NLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 220 ~a~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
+|+++ +.++++|.+.+.... +..+ +.++-.+++.|..|++.|+|| +|++++ +++.++
T Consensus 145 ~~~~~~~~~l~~vDavss~g~~-----~i~~-----------d~~~iD~~~~~sqK~l~gppG--~~~v~~---s~~~le 203 (348)
T d1iuga_ 145 AFKEKNPEGLVGADMVTSLLVG-----EVAL-----------EAMGVDAAASGSQKGLMCPPG--LGFVAL---SPRALE 203 (348)
T ss_dssp HHHHHCTTCEEEEECTTTBTTB-----CCCS-----------GGGTCSEEEEESSSTTCCCSC--EEEEEE---CHHHHH
T ss_pred HHHhhhccceeechhhhccccc-----cccc-----------ccccCCEEEeccccceecCCc--eeeeee---chHHHh
Confidence 66665 588899998775322 1222 222234788999999988898 688886 776666
Q ss_pred HHHh------------h-h-h-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 041151 298 EIYK------------I-A-S-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNV 362 (463)
Q Consensus 298 ~l~~------------~-~-~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~ 362 (463)
+++. . . . ..++++....+++..+|+ ...++..+..+..+..++.++..+++. |+
T Consensus 204 ~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-gl 272 (348)
T d1iuga_ 204 RLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLE----------EVLPRLEEHLALKAWQNALLYGVGEEG-GL 272 (348)
T ss_dssp TCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH----------HHGGGHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred hhcccccccchhhhhhhhccCcccccccchHHHHHHHHHH----------HHHHHHhHHHHHHHHHHHHHhhhhhhh-hh
Confidence 4321 1 1 1 234555556666666653 111222222222333344555555555 76
Q ss_pred ccccCCce-eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 363 VCNFTEGA-MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 363 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
...+..-+ .... +.+|+++ +..+ +...|+++||.+.+|. +...+ ..+||+.. .+.+|++.+
T Consensus 273 ~~~~~~~s~~v~~--~~~P~g~----------~~~~-~~~~l~~~gi~i~~G~--~~l~~-~~~RIg~mG~~~~~d~~~~ 336 (348)
T d1iuga_ 273 RPVPKRFSPAVAA--FYLPEGV----------PYAR-VKEAFAQRGAVIAGGQ--GPLKG-KVFRLSLMGAYDRYEALGV 336 (348)
T ss_dssp EESCSSBCTTCEE--EECCTTC----------CHHH-HHHHHHTTTEECEECC--GGGTT-TEEEECCCSSCCHHHHHHH
T ss_pred ccChhhcCCeEEE--EECCCCC----------CHHH-HHHHHHHCCeEEEcCc--cccCC-CEEEEeCCCCCCHHHHHHH
Confidence 65532211 1222 4566542 2344 4567889999998875 32222 47999876 788999999
Q ss_pred HHHHHHHHHHH
Q 041151 440 MESFKKFNDEF 450 (463)
Q Consensus 440 ~~~l~~~l~~~ 450 (463)
++.|+++++++
T Consensus 337 ~~~l~~~l~~~ 347 (348)
T d1iuga_ 337 AGMFREVLEEI 347 (348)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=7.3e-14 Score=134.35 Aligned_cols=312 Identities=10% Similarity=0.010 Sum_probs=193.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC---CCCC---HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD---SRGI---PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~---~~g~---~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
++.+++++...+.+. ...+|+. ..|. .++.....+...+.+|. .-.+|...+ ++.|...++.+++ +||
T Consensus 39 S~~v~~a~~S~l~nk--YaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a--~~anVqp~S-Gs~AN~av~~All-~pG 112 (416)
T d1dfoa_ 39 SPRVMQAQGSQLTNK--YAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA--DYANVQPHS-GSQANFAVYTALL-EPG 112 (416)
T ss_dssp CHHHHHHHTSGGGGC--CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSS-HHHHHHHHHHHHC-CTT
T ss_pred CHHHHHHhcCcccCc--ccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCC--Ccceeeccc-CccHHHHHHHHhc-CCC
Confidence 788888887776652 2334443 2233 23332223333444342 222555544 5778999999998 999
Q ss_pred CEEEEc---cCcee-------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 156 DGVVLL---FHTTW-------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 156 d~Vlvp---~g~~~-------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
|+|+.. .|+.+ .+....+|. +++++..... ++|+|++-.-.+| ..++
T Consensus 113 D~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDy-d~l~~~a~~~-----kPklIi~G~S~y~--r~~d--- 181 (416)
T d1dfoa_ 113 DTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDY-ADLEKQAKEH-----KPKMIIGGFSAYS--GVVD--- 181 (416)
T ss_dssp CEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCH-HHHHHHHHHH-----CCSEEEEECSSCC--SCCC---
T ss_pred CeeeeccccccccccccccccccCceEEEEecccCCccCccH-HHHHHHHHHh-----ccceEEecccccc--cccC---
Confidence 999996 34332 223456999 9999999887 9999988765555 4555
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
.+++.++|.+.|.++++|.+|.......+ .+++.... . .|+.+|.+|+| .|-|.|.+.+..+.+
T Consensus 182 ~~~~reiad~vga~l~~D~aH~~GLIa~g-~~~sP~~~--------a----Dvvt~tThKtl---rGPrggiI~~~~~~~ 245 (416)
T d1dfoa_ 182 WAKMREIADSIGAYLFVDMAHVAGLVAAG-VYPNPVPH--------A----HVVTTTTHKTL---AGPRGGLILAKGGSE 245 (416)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTHHHHHHT-SSCCCTTT--------S----SEEEEESSSTT---CCCSCEEEEESSCCH
T ss_pred HHHHHHHHHhcCceEEcchhhhhcceecc-ccCCcccc--------c----ceeeeehhhcc---cCCCceEEEeccchH
Confidence 66677777799999999999964433122 22222111 2 27889999998 588899999633346
Q ss_pred hHHHHHHhhh-hhcccCChHHHHHH-HHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-Cce
Q 041151 294 KTVDEIYKIA-SIALSPNVPAQIFM-GLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT-EGA 370 (463)
Q Consensus 294 ~~~~~l~~~~-~~~~~~~~~~q~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-~g~ 370 (463)
++.+++.+.- ....+.+...+.++ +.++... ....+ +.-.++..+|.+.|.+.|.+. |+++... ..+
T Consensus 246 ~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea--~~~~f-------k~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdn 315 (416)
T d1dfoa_ 246 ELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA--MEPEF-------KTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDN 315 (416)
T ss_dssp HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHH-------HHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSS
T ss_pred hHHHHHHhhhCcccccCccHHHHHHHHHHHHHH--cCHHH-------HHHHHHHHHHHHHHHHHHHhC-CcccccCCCCC
Confidence 7777775543 32333344444433 2222110 01222 334556788999999999998 9988742 334
Q ss_pred eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC---CCCCcEEEEEec------CCcCcHHHHHH
Q 041151 371 MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ---KEGIFHLRTTIL------PAEEDMPAIME 441 (463)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~---~~~~~~lRis~~------~~~e~i~~~~~ 441 (463)
..+++++. +.+ -+...+...|++.||.+.--...+. +-....+||+.. ..++|+++..+
T Consensus 316 Hlvlvdl~-~~~-----------~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~ 383 (416)
T d1dfoa_ 316 HLFLVDLV-DKN-----------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAG 383 (416)
T ss_dssp SEEEEECG-GGT-----------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHH
T ss_pred ceeEEEec-ccC-----------CCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHH
Confidence 56676664 111 1455677889999999863221111 112246999988 45678888877
Q ss_pred HHHHHHH
Q 041151 442 SFKKFND 448 (463)
Q Consensus 442 ~l~~~l~ 448 (463)
-|.++++
T Consensus 384 ~I~~~l~ 390 (416)
T d1dfoa_ 384 WMCDVLD 390 (416)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.64 E-value=8.4e-14 Score=133.29 Aligned_cols=308 Identities=12% Similarity=0.071 Sum_probs=194.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC---CCCC---HHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD---SRGI---PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~---~~g~---~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g 155 (463)
++.+.++....+.+. ...+|+. ..|. .++.+...+...+.++. .--+|...+| +.|...++.+|+ +||
T Consensus 36 S~~v~~a~~S~l~nk--yaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a--~~anVqp~SG-s~An~av~~all-~pG 109 (405)
T d1kl1a_ 36 SRAVMEAQGSVLTNK--YAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPHSG-AQANMAVYFTVL-EHG 109 (405)
T ss_dssp CHHHHHHHTSGGGGC--CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCC--SEEECCCSSH-HHHHHHHHHHHC-CTT
T ss_pred CHHHHHHhcCcccCc--CcCCCCCccccCCchhHHHHHHHHHHHHHHHhCC--CcceeeccCc-hHHHHHHHHHhc-CCC
Confidence 788888887777652 2334443 1222 23332223344444342 2235555555 678899999998 999
Q ss_pred CEEEEc---cCcee--------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 156 DGVVLL---FHTTW--------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 156 d~Vlvp---~g~~~--------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
|+|+.. .|+.+ ..+.+.+|. +++++.+... +||+|++-.-.+| ..++
T Consensus 110 D~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~-d~l~~~a~~~-----kPklIi~G~S~y~--r~~d-- 179 (405)
T d1kl1a_ 110 DTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDY-DDVREKARLH-----RPKLIVAAASAYP--RIID-- 179 (405)
T ss_dssp CEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCH-HHHHHHHHHH-----CCSEEEECCSSCC--SCCC--
T ss_pred CEEEEeecccccccccCccccccceEEEEEEeccchhcccccH-HHHHHHHHhh-----CcceEEecccccc--cccC--
Confidence 999985 44332 335678999 9999999987 9999987765665 3444
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
.+++.++|.+.|.+++.|-+|.......+. +++.... . .|+.+|.+|+| +|=|.|.+.+ +
T Consensus 180 -~~~~reIad~vga~l~~D~aH~~GLIa~g~-~~~P~~~--------a----Dvvt~tThKtl---rGPrgg~I~~---~ 239 (405)
T d1kl1a_ 180 -FAKFREIADEVGAYLMVDMAHIAGLVAAGL-HPNPVPY--------A----HFVTTTTHKTL---RGPRGGMILC---Q 239 (405)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SCCSTTT--------C----SEEEEESSSTT---CCCSCEEEEE---C
T ss_pred -hHHHHHHHhhhCCEEecchhhHhhhhhhhh-cCChhhh--------h----hheeccccccc---cCCCCceEEe---c
Confidence 667777777999999999999543321222 2222111 2 26789999998 5778899985 7
Q ss_pred hhHHHHHHhhh-hhcccCChHHHHHHHHh-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccC-Cc
Q 041151 293 PKTVDEIYKIA-SIALSPNVPAQIFMGLM-VNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFT-EG 369 (463)
Q Consensus 293 ~~~~~~l~~~~-~~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~-~g 369 (463)
.++.+++.+.- ....+.+...+.++.+. +. + ....+.+.-.++..+|++.|.+.|.+. |+.+... ..
T Consensus 240 ~~~~~~i~~avfPg~qggp~~~~iAa~Aval~------E---a~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd 309 (405)
T d1kl1a_ 240 EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFG------E---ALQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTD 309 (405)
T ss_dssp HHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHH------H---HHSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCS
T ss_pred chhHHHHHhhhCcccccCcchhHHHHHHHHHH------H---HhChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCc
Confidence 88887776654 32333344444443322 21 1 011223445666788899999999997 8888742 23
Q ss_pred eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee----CCCCCCCCCCCcEEEEEec------CCcCcHHHH
Q 041151 370 AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV----PGSGFGQKEGIFHLRTTIL------PAEEDMPAI 439 (463)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~lRis~~------~~~e~i~~~ 439 (463)
+-.+|+++. +.+ -+...+..+|++.||.+. |++.-. +-....+||+.. ..++|+.++
T Consensus 310 ~H~vlvdl~-~~~-----------~~g~~ae~~Le~agI~~Nkn~iP~d~~~-~~~~SGiRiGT~a~TtrG~~e~dm~~i 376 (405)
T d1kl1a_ 310 NHLLLVDLR-PQQ-----------LTGKTAEKVLDEVGITVNKNTIPYDPES-PFVTSGIRIGTAAVTTRGFGLEEMDEI 376 (405)
T ss_dssp SSEEEEECG-GGT-----------CCHHHHHHHHHHHTEECEECCCTTCSSC-TTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred cceeecccc-ccC-----------CcHHHHHHHHHHcCeEEcCCcCCCCCCC-CCCCCceeecCHHHHhCCCCHHHHHHH
Confidence 446676664 111 145556788999999887 432111 111236999988 466788888
Q ss_pred HHHHHHHHH
Q 041151 440 MESFKKFND 448 (463)
Q Consensus 440 ~~~l~~~l~ 448 (463)
.+-|.++++
T Consensus 377 a~~I~~~l~ 385 (405)
T d1kl1a_ 377 AAIIGLVLK 385 (405)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 888877774
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.61 E-value=1.2e-13 Score=135.25 Aligned_cols=299 Identities=10% Similarity=0.037 Sum_probs=184.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL 161 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp 161 (463)
..+.++++.+.+.+ +.+. +....-...+++.+|+|++ ...++.+++++.|+.+++.++-.++||+|++|
T Consensus 12 ~~~~~~~~~~~l~~--g~~~-~~~g~~v~~fE~~~a~~~g--------~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p 80 (384)
T d1b9ha_ 12 DDAERNGLVRALEQ--GQWW-RMGGDEVNSFEREFAAHHG--------AAHALAVTNGTHALELALQVMGVGPGTEVIVP 80 (384)
T ss_dssp CHHHHHHHHHHHHT--SCCB-TTTCSHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHc--CCee-ecCCHHHHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEe
Confidence 67778888888886 1211 1222235788888888864 45678888889999999999722899999998
Q ss_pred -------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhh
Q 041151 162 -------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQ 223 (463)
Q Consensus 162 -------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~ 223 (463)
.|.++ ....+.+|+ +.+++.+.+ ++++|+++ +..|.... +.+|.++|++
T Consensus 81 ~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d~-~~~~~~i~~------~tk~i~~~---~~~g~~~d---~~~i~~~~~~ 147 (384)
T d1b9ha_ 81 AFTFISSSQAAQRLGAVTVPVDVDAATYNLDP-EAVAAAVTP------RTKVIMPV---HMAGLMAD---MDALAKISAD 147 (384)
T ss_dssp SSSCTHHHHHHHHTTCEEEEECBCTTTCCBCH-HHHHHHCCT------TEEEECCB---CGGGCCCC---HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccch-hhhcccccc------cccccccc---cccccccc---cccchhhhhh
Confidence 66666 345678999 999998887 89998744 45565555 6778888999
Q ss_pred CCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHHHh
Q 041151 224 ENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEIYK 301 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~ 301 (463)
++++||+|.+++.+....+....++ ++ +.+.|| +|.+ + ....|.+++ .++++.+.++.
T Consensus 148 ~~i~lieD~a~a~ga~~~g~~~g~~-----------g~----~~~~Sf~~~K~i-~--~g~GG~i~t--~~~~~~~~~~~ 207 (384)
T d1b9ha_ 148 TGVPLLQDAAHAHGARWQGKRVGEL-----------DS----IATFSFQNGKLM-T--AGEGGAVVF--PDGETEKYETA 207 (384)
T ss_dssp HTCCBCEECTTCTTCEETTEEGGGS-----------SS----CEEEECCTTSSS-C--SSSCEEEEE--CTTCHHHHHHH
T ss_pred hhhhhhhhhceecccccCCEecCcc-----------cc----cceecccccccc-c--ccccchhhh--hhHHHHHHHHH
Confidence 9999999999987543122221111 22 344454 7876 3 344788877 57888887766
Q ss_pred hhhhc------------------ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 302 IASIA------------------LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 302 ~~~~~------------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
+.... +..+.+ |+++... .++.+++..++-+++.+++.+.|++++++.
T Consensus 208 ~~~~g~~~~~~~~~~~~~~~G~n~rms~l-~Aaig~~-------------qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~ 273 (384)
T d1b9ha_ 208 FLRHSCGRPRDDRRYFHKIAGSNMRLNEF-SASVLRA-------------QLARLDEQIAVRDERWTLLSRLLGAIDGVV 273 (384)
T ss_dssp HHHTBTTCCTTCSSCCCCSCCCBCBCBHH-HHHHHHH-------------HHTTHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred HHhcCCCCccccccccccccccccccccc-hhhhhhh-------------hhhhcccchhhhhhhhhhhhhhhhcccccc
Confidence 54311 112223 3332211 223344445555667778888888877764
Q ss_pred cccC----C-ce-eEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCC----------CCCCC-------
Q 041151 364 CNFT----E-GA-MYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSG----------FGQKE------- 420 (463)
Q Consensus 364 ~~~~----~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~----------f~~~~------- 420 (463)
.... . .. ++..+.+..... +..+.+.+.|+++||.+++... ++...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~ 342 (384)
T d1b9ha_ 274 PQGGDVRADRNSHYMAMFRIPGLTE-----------ERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIA 342 (384)
T ss_dssp ECCCCTTCCBCCCSEEEEECTTCCH-----------HHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHH
T ss_pred cccccccccccccccccceeccccc-----------ccHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccc
Confidence 3211 1 12 222222221111 1223345667899998876421 11000
Q ss_pred ---------CCcEEEEEec--CC-cCcHHHHHHHHHHHHHH
Q 041151 421 ---------GIFHLRTTIL--PA-EEDMPAIMESFKKFNDE 449 (463)
Q Consensus 421 ---------~~~~lRis~~--~~-~e~i~~~~~~l~~~l~~ 449 (463)
.+..+.|-+. .+ ++|++..++.|++++++
T Consensus 343 ~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 343 RRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp HTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 0134556555 45 46899999999998865
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.7e-14 Score=142.04 Aligned_cols=305 Identities=10% Similarity=0.049 Sum_probs=184.7
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--------C
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--------G 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------~ 153 (463)
++.+.+++.+.+.+.......|. ..-...+.+.+++.. ..+.+++++++++++..+++...+ .
T Consensus 59 ~p~i~~Av~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~ 129 (404)
T d2byla1 59 HPKIVNALKSQVDKLTLTSRAFY-NNVLGEYEEYITKLF--------NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQ 129 (404)
T ss_dssp CHHHHHHHHHHHTTCCCCCTTEE-ESSHHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHhhCCCcccccc-cchHHHHHHhhhhcc--------cccccccccCccccchhHHHHHHHHhhhccccc
Confidence 78899999998876321111121 111223334443332 457899999999999999987520 1
Q ss_pred CC-CEEEEc----cCcee----------cCC-----------CcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-
Q 041151 154 EG-DGVVLL----FHTTW----------KRQ-----------QIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG- 206 (463)
Q Consensus 154 ~g-d~Vlvp----~g~~~----------~~~-----------~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG- 206 (463)
.+ ..++.. +|... ... .--.|+ +++++.+.+. +.-+|++.--....|
T Consensus 130 ~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~-~~l~~~l~~~-----~iAaviiEPi~g~~G~ 203 (404)
T d2byla1 130 KYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDL-PALERALQDP-----NVAAFMVEPIQGEAGV 203 (404)
T ss_dssp TTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCH-HHHHHHHTST-----TEEEEEECSSBTTTTS
T ss_pred cccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecccCH-HHHHHhcCCC-----CeEEEEECCccCCCCC
Confidence 12 344433 21111 000 012366 8898888652 677776652233346
Q ss_pred cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 207 QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 207 ~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
...+.+-+++|.++|++||+++|.||++..+.-. +. ..... .+|+ ..+ | .+++|.+ +-..+.+|.+
T Consensus 204 ~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~-G~-~~a~~----~~gv--~PD---i--~~~gK~l-~gG~~p~~av 269 (404)
T d2byla1 204 VVPDPGYLMGVRELCTRHQVLFIADEIQTGLART-GR-WLAVD----YENV--RPD---I--VLLGKAL-SGGLYPVSAV 269 (404)
T ss_dssp BCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SS-SSGGG----GGTC--CCS---E--EEECGGG-GTTSSCCEEE
T ss_pred ccCCHHHHHHHHHHHHhcCeEEEeeccccccccc-cc-cchhh----hcCC--CCC---E--EEECchh-hCCCccceee
Confidence 4567778999999999999999999999875221 11 11111 1211 221 2 3899999 5333789999
Q ss_pred EecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--Ccc
Q 041151 287 EMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR--NVV 363 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p--g~~ 363 (463)
++ ++++.+.+..... .+++.++++..++.+.|+ .+++ +.+.++.++..+++.+.|+++. .+.
T Consensus 270 ~~---~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~i~~-~~l~~~~~~~g~~l~~~l~~l~~~~i~ 334 (404)
T d2byla1 270 LC---DDDIMLTIKPGEHFSTYGGNPLGCRVAIAALE-----------VLEE-ENLAENADKLGIILRNELMKLPSDVVT 334 (404)
T ss_dssp EE---CHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHH-----------HHHH-TTHHHHHHHHHHHHHHHHHTSCTTTEE
T ss_pred ee---chhhhhccCCCCCCcCCCcCHHHHHHHHHHHH-----------HHHh-cCchhhhhHhhHHHHHHHHhhccccce
Confidence 94 7877766655443 467788888888888873 2322 3456667777778888887751 121
Q ss_pred cccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHH
Q 041151 364 CNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIME 441 (463)
Q Consensus 364 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~ 441 (463)
-+...| ++.-+.+..+.. .....++ ..+.++||++.+. +.+.+|++.. .++++++++++
T Consensus 335 ~vRg~G-l~~~i~~~~~~~----------~~~~~~~-~~l~~~Gvl~~~~-------~~~~i~l~PpL~it~~~id~~~~ 395 (404)
T d2byla1 335 AVRGKG-LLNAIVIKETKD----------WDAWKVC-LRLRDNGLLAKPT-------HGDIIRFAPPLVIKEDELRESIE 395 (404)
T ss_dssp EEEEET-TEEEEEECCCSS----------CCHHHHH-HHHHHTTEECEEE-------ETTEEEECCCTTCCHHHHHHHHH
T ss_pred eeeecc-cEEEEEEecCCc----------hhHHHHH-HHHHhCCeEEecC-------CCCEEEEECCcCCCHHHHHHHHH
Confidence 122223 333333332221 1233444 4466789998762 1236999977 78999999999
Q ss_pred HHHHHHHH
Q 041151 442 SFKKFNDE 449 (463)
Q Consensus 442 ~l~~~l~~ 449 (463)
+|.+++++
T Consensus 396 ~l~~al~~ 403 (404)
T d2byla1 396 IINKTILS 403 (404)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99998864
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=2.3e-14 Score=140.27 Aligned_cols=300 Identities=12% Similarity=0.088 Sum_probs=188.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+++.+. .+.+..-..+.+..+++.+.... +..-+.+.+++++++|+..+++.... .....|+.
T Consensus 55 hp~v~~a~~~~~~~~-----~~~~~~~~~~~~~~la~~l~~~~--~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~ 127 (387)
T d1vefa1 55 NPEVVEAVKRQAETL-----MAMPQTLPTPMRGEFYRTLTAIL--PPELNRVFPVNSGTEANEAALKFARAHTGRKKFVA 127 (387)
T ss_dssp CHHHHHHHHHHHHHC-----CCCCTTSCCHHHHHHHHHHHHTS--CTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred cHHHHHHHHHHHHhh-----cccccccCCchHHHHHHHhhhhc--cccceeeccccCchHHHHHHHHHHHhhcccceecc
Confidence 788999999988872 12221112356667777765431 12224799999999999999987531 22345555
Q ss_pred c----cCcee----------------c--CC--Cc-ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc-CCCHHHH
Q 041151 161 L----FHTTW----------------K--RQ--QI-GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ-CLSEANL 214 (463)
Q Consensus 161 p----~g~~~----------------~--~~--~~-~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~-~~s~~~l 214 (463)
- +|... + .. .. -.|. +.|++.+.+ ++-+|++.--..-.|. ..+++-+
T Consensus 128 ~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~-~~l~~~~~~------~iAavi~EPi~g~~G~~~~~~~~l 200 (387)
T d1vefa1 128 AMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDV-EALKRAVDE------ETAAVILEPVQGEGGVRPATPEFL 200 (387)
T ss_dssp ETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCH-HHHHHHCCT------TEEEEEECSEETTTTSEECCHHHH
T ss_pred cccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCH-HHHHHhcCC------CeEEEEEECCCCCCCCccCCHHHH
Confidence 3 23221 0 00 01 1266 888888876 7888766422333464 4678889
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChh
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK 294 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~ 294 (463)
++|.++|++||+++|.||++..+.-. +.. .... .+++ ..+ +.+++|.+ + .|+-++.++ +.++
T Consensus 201 ~~l~~lc~~~g~llI~DEV~tGfgR~-G~~-~~~~----~~~v--~PD-----i~~~gK~l-~-gG~~~~~~~---~~~~ 262 (387)
T d1vefa1 201 RAAREITQEKGALLILDEIQTGMGRT-GKR-FAFE----HFGI--VPD-----ILTLAKAL-G-GGVPLGVAV---MREE 262 (387)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTTT-SSS-STHH----HHTC--CCS-----EEEECGGG-G-TTSSCEEEE---EEHH
T ss_pred HHHHHHHHHcCceEEecccccccCcc-CCC-cccc----cCCc--CCc-----eeeecccC-C-CCccccccc---ccee
Confidence 99999999999999999999876221 111 1111 1211 222 24588998 4 688888887 4676
Q ss_pred HHHHHHhhh-hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccccCCcee
Q 041151 295 TVDEIYKIA-SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC--RNVVCNFTEGAM 371 (463)
Q Consensus 295 ~~~~l~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--pg~~~~~~~g~~ 371 (463)
..+.+.... +.+++.++++..++.+.|+ .++ ..+..++.++.-+++.+.|+++ +.+.-+...| +
T Consensus 263 ~~~~~~~~~~g~T~~gnPla~aaa~a~L~-----------~l~-~~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~G-l 329 (387)
T d1vefa1 263 VARSMPKGGHGTTFGGNPLAMAAGVAAIR-----------YLE-RTRLWERAAELGPWFMEKLRAIPSPKIREVRGMG-L 329 (387)
T ss_dssp HHHTSCTTSSCCSSTTCHHHHHHHHHHHH-----------HHH-HHTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEET-T
T ss_pred eeeccccCCccccCCCCcchhhhcccchh-----------hcc-cccccchHhhhhHHHHHHHHhcCCCceEEEeecc-e
Confidence 666654443 2567888999988888863 222 2346667777888888888875 2222122223 3
Q ss_pred EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHH
Q 041151 372 YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFN 447 (463)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l 447 (463)
+.-+.+.-+ .......++.++|+.+.+. +.+.+|++.+ .++++++++++++++++
T Consensus 330 ~~~ie~~~~--------------~~~~~~~~~~~~g~l~~~~-------g~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 330 MVGLELKEK--------------AAPYIARLEKEHRVLALQA-------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp EEEEEESSC--------------SHHHHHHHHHHHCEECEES-------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCC--------------chHHHHHHHHHCCCeEEec-------CCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 333333311 2334556677789887762 2346899977 79999999999999886
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.55 E-value=2.5e-12 Score=128.67 Aligned_cols=324 Identities=11% Similarity=0.023 Sum_probs=195.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCC-------CCCcEEEcCCcHHHHHHHHHHHhc--
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS-------DPELIFLTDGASKGVMQTLNCVIR-- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~-------~~~~i~~t~G~~~al~~~~~~l~~-- 152 (463)
++.++-.+...+-+. +...|........+...+.+|+.+..|++- ....-++|+|+++++..++.+--.
T Consensus 86 ~~~~l~~~~~~~~n~--n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~ 163 (476)
T d1js3a_ 86 YPAMLADMLCGAIGC--IGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKV 163 (476)
T ss_dssp HHHHHHHHHHHHHCC--CCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc--cccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHH
Confidence 556665555544442 333333333457899999999999888752 223567888988888887754310
Q ss_pred -------CCC--------C-EEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEE
Q 041151 153 -------GEG--------D-GVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVII 199 (463)
Q Consensus 153 -------~~g--------d-~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~ 199 (463)
.+| . .|+++ .|..+ .+.++.+|+ ++|++.+++..++|..+-+|+.+
T Consensus 164 ~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~-~~L~~~i~~~~~~g~~p~~Vvat 242 (476)
T d1js3a_ 164 VRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRA-SALQEALERDKAAGLIPFFVVAT 242 (476)
T ss_dssp HHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCH-HHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCCCCCcCH-HHHHHHHHHHHhcCCCcEEEeec
Confidence 111 1 35554 44433 556789999 99999999887777677788888
Q ss_pred CCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC
Q 041151 200 NPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC 279 (463)
Q Consensus 200 ~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~ 279 (463)
..++.||.+=+ +++|+++|++|++|+.+|-+|..+...... ... ...++ ..- .-+..+++|++ +.|
T Consensus 243 aGtt~~G~iDp---l~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~-~~~---~~~gi----~~a--DSit~d~HK~l-~~P 308 (476)
T d1js3a_ 243 LGTTSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPE-FRH---LLNGV----EFA--DSFNFNPHKWL-LVN 308 (476)
T ss_dssp BSCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTT-TGG---GGTTG----GGC--SEEEECHHHHS-SCC
T ss_pred CCCccceeecc---HHHHHHHHHhcCcEEEEecccchhhhhhcc-hhh---hhcCC----ccc--ceeeecCcccc-ccC
Confidence 99999999966 888888999999999999999875431111 111 11111 111 13557899988 544
Q ss_pred CceeEEEEecCCChhHHHHHHhh------------------hhhcccCChH-HHHHHHHhcCCCCCCCchHHHHHHHHHH
Q 041151 280 GQRGGYFEMTNIPPKTVDEIYKI------------------ASIALSPNVP-AQIFMGLMVNPLKPGDISYEQFVRESKG 340 (463)
Q Consensus 280 G~R~G~~~~~~~~~~~~~~l~~~------------------~~~~~~~~~~-~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (463)
. -+|++++ .++......... ...+...++. ....+...++ ..-..-.++
T Consensus 309 ~-~~g~~l~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~---------~~G~~g~~~ 376 (476)
T d1js3a_ 309 F-DCSAMWV--KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFR---------MYGVKGLQA 376 (476)
T ss_dssp S-SCEEEEE--SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHH---------HHHHHHHHH
T ss_pred C-cceeecc--cchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHH---------HHhHhHHHH
Confidence 4 4777766 454433211100 0001111111 1111111111 001223555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcccccC-CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcC-eEeeCCCCCCC
Q 041151 341 ILESLRRRARMMTDGFNSCRNVVCNFT-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATG-ISTVPGSGFGQ 418 (463)
Q Consensus 341 ~~~~~~~~~~~l~~~L~~~pg~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g-I~v~pg~~f~~ 418 (463)
+.++..+..+++.+.|++.|++++..+ +-+.. .+++.-+... ...+..+ +.+.| +.+.+...
T Consensus 377 ~i~~~~~lA~~l~~~l~~~~~fel~~~p~l~iV-~Fr~~~~d~~-----------n~~l~~~-l~~~G~~~~s~t~~--- 440 (476)
T d1js3a_ 377 YIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLV-CFRLKGSDGL-----------NEALLER-INSARKIHLVPCRL--- 440 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEE-EEEESSCHHH-----------HHHHHHH-HHHHTSCBCEEEEE---
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEECCCceEEE-EEEccCChHH-----------HHHHHHH-HHhcCCEEEeeeeE---
Confidence 666777888999999999999988754 44443 3333322221 2333444 44455 44544221
Q ss_pred CCCCcEEEEEec---CCcCcHHHHHHHHHHHHHHHH
Q 041151 419 KEGIFHLRTTIL---PAEEDMPAIMESFKKFNDEFM 451 (463)
Q Consensus 419 ~~~~~~lRis~~---~~~e~i~~~~~~l~~~l~~~~ 451 (463)
.+..++|+++. +++++++.+++.|++..+++.
T Consensus 441 -~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll 475 (476)
T d1js3a_ 441 -RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL 475 (476)
T ss_dssp -TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 34568999987 677889999999999988764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=9.7e-14 Score=137.67 Aligned_cols=321 Identities=13% Similarity=0.074 Sum_probs=181.1
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC-CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD-SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vl 159 (463)
++.+.+++.+++.+. .+.. .....+....+++.+.+...- -..+.+++++++++++..+++.... .....|+
T Consensus 58 ~p~i~~ai~~q~~~~-----~~~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii 131 (425)
T d1sffa_ 58 HPKVVAAVEAQLKKL-----SHTCFQVLAYEPYLELCEIMNQKVPG-DFAKKTLLVTTGSEAVENAVKIARAATKRSGTI 131 (425)
T ss_dssp CHHHHHHHHHHTTTC-----SCCCTTTEECHHHHHHHHHHHHHSSC-SSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cHHHHHHHHHHHhhc-----CCcccccccCcHHHHHHHHHHhhhhh-cccceeeeeccccchhhhHHHHhhhhhcccceE
Confidence 788999999888763 1211 112234555667776654211 0124788999999999999887531 1234455
Q ss_pred Ec----cCcee--------------------------c-----CCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCC
Q 041151 160 LL----FHTTW--------------------------K-----RQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNP 204 (463)
Q Consensus 160 vp----~g~~~--------------------------~-----~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NP 204 (463)
.. +|... + ............++.+.. .....++.+|++.--...
T Consensus 132 ~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vaavi~EPi~g~ 210 (425)
T d1sffa_ 132 AFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN-DAAPEDIAAIVIEPVQGE 210 (425)
T ss_dssp EETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH-TCCGGGEEEEEECSBCTT
T ss_pred eecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHh-cccccceEEEEecCccCC
Confidence 43 22111 0 000000110111111111 111125667666532323
Q ss_pred Ccc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCcee
Q 041151 205 TGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRG 283 (463)
Q Consensus 205 tG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 283 (463)
.|. ..+++-++.|.++|++||+++|.||++..+.-.+ .. ... ..+|+ ..+ +.+++|.+ | .|+.+
T Consensus 211 ~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g-~~-~a~----~~~gv--~PD-----i~~~gK~l-~-gG~P~ 275 (425)
T d1sffa_ 211 GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTG-TL-FAM----EQMGV--APD-----LTTFAKSI-A-GGFPL 275 (425)
T ss_dssp TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SS-SGG----GGTTS--CCS-----EEEECGGG-G-TSSCC
T ss_pred CCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcc-hh-hHH----HhcCC--Ccc-----ceeccccc-C-CCcce
Confidence 454 5678889999999999999999999999742111 11 111 11221 222 35599999 4 58999
Q ss_pred EEEEecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh----hc
Q 041151 284 GYFEMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF----NS 358 (463)
Q Consensus 284 G~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L----~~ 358 (463)
|.++ +++++.+.+..... .+++.++++..++.+.|+ .++ .....++.++.-+++.+.| ++
T Consensus 276 ~av~---~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~i~-~~~~~~~~~~~g~~l~~~l~~~~~~ 340 (425)
T d1sffa_ 276 AGVT---GRAEVMDAVAPGGLGGTYAGNPIACVAALEVLK-----------VFE-QENLLQKANDLGQKLKDGLLAIAEK 340 (425)
T ss_dssp EEEE---EEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHH-----------HHH-HTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEE---EcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHH-----------HHH-HhhhhhhhhhhhhhhhhhhhhhHhh
Confidence 9998 48888777654443 578888999988888874 222 1233444444444444444 34
Q ss_pred CCCcccccCCceeEEeeeccCChhhHHHHhhcCCCC--hHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcC
Q 041151 359 CRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVP--DVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEE 434 (463)
Q Consensus 359 ~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e 434 (463)
.|-+.-+...|.++. +.+..+.. ....+ -...+...+.++||++.++...+ +.+|++.+ .+++
T Consensus 341 ~~~v~~vrg~Gl~~~-i~f~~~~~-------~~~~~~~~~~~~~~~l~~~Gvl~~~~g~~~-----n~i~~~PpL~it~~ 407 (425)
T d1sffa_ 341 HPEIGDVRGLGAMIA-IELFEDGD-------HNKPDAKLTAEIVARARDKGLILLSCGPYY-----NVLRILVPLTIEDA 407 (425)
T ss_dssp CTTEEEEEEETTEEE-EEEBGGGC-------TTSBCHHHHHHHHHHHHHTTEECEEESTTS-----CEEEECCCTTCCHH
T ss_pred CCceEEEEccccEEE-EEEeccCc-------cCCccHHHHHHHHHHHHHCCCEEeccCCCC-----CEEEEECCCCCCHH
Confidence 443333333444332 22211100 00001 11223345667899998854332 36999987 7999
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKFNDEFME 452 (463)
Q Consensus 435 ~i~~~~~~l~~~l~~~~~ 452 (463)
||++++++|.+++++++|
T Consensus 408 eid~~l~~l~~al~eikk 425 (425)
T d1sffa_ 408 QIRQGLEIISQCFDEAKQ 425 (425)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988753
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=1.9e-13 Score=135.39 Aligned_cols=306 Identities=11% Similarity=0.070 Sum_probs=186.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCC-CHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh-----c-CC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRG-IPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI-----R-GE 154 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g-~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-----~-~~ 154 (463)
++.+.+++.+.+... .|....+ ..+-...+++.+..... ..-+.+++++++++|+..+++... + .+
T Consensus 61 ~p~i~~Ai~~q~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~f~~sGseA~e~A~k~ar~~~~~~g~~ 133 (429)
T d1s0aa_ 61 HPQLNAAMKSQIDAM-----SHVMFGGITHAPAIELCRKLVAMTP--QPLECVFLADSGSVAVEVAMKMALQYWQAKGEA 133 (429)
T ss_dssp CHHHHHHHHHHHHHC-----SCCCCSSEECHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHhc-----CCcccCCccchHHHHHHHHHHhhhc--cCcceeeeccccccchhhhhhhhhheeeccccc
Confidence 789999999888773 2211111 11233334444433322 234689999999999998887653 1 12
Q ss_pred CCEEEEc----cCcee---------------------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEE
Q 041151 155 GDGVVLL----FHTTW---------------------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMV 197 (463)
Q Consensus 155 gd~Vlvp----~g~~~---------------------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~ 197 (463)
...|+.- +|... ......-++ +.+++.+... +.++.+|+
T Consensus 134 ~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~iaavi 209 (429)
T d1s0aa_ 134 RQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM-VGFARLMAAH---RHEIAAVI 209 (429)
T ss_dssp CCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGG-HHHHHHHHHH---TTTEEEEE
T ss_pred ccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhh-hhhhhhhhhc---CCccceee
Confidence 3455554 22211 011112244 6666655543 23577776
Q ss_pred EEC-CCCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCccc
Q 041151 198 IIN-PGNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGY 275 (463)
Q Consensus 198 l~~-p~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 275 (463)
+.- ..+--|. ..+++-+++|.++|++||+++|.||++..+.-.+ .. .... .+++ ..+ +.+++|.+
T Consensus 210 vEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG-~~-~~~~----~~~v--~PD-----i~~~gK~l 276 (429)
T d1s0aa_ 210 IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG-KL-FACE----HAEI--APD-----ILCLGKAL 276 (429)
T ss_dssp ECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTS-SS-SGGG----GGTC--CCS-----EEEECGGG
T ss_pred ecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccc-cc-cccc----ccee--ccc-----cccccccc
Confidence 663 2354444 5688999999999999999999999999762211 11 1111 1111 221 24588998
Q ss_pred CCCCCceeEEEEecCCChhHHHHHHhhh------hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 041151 276 WGECGQRGGYFEMTNIPPKTVDEIYKIA------SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRA 349 (463)
Q Consensus 276 ~g~~G~R~G~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (463)
+-.+..+|.++ +++++.+.+.... ..+++.++++..++.+.|+ .++ .++..++.++.-
T Consensus 277 -~gG~~p~~av~---~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~-----------~i~-~~~~~~~~~~~g 340 (429)
T d1s0aa_ 277 -TGGTMTLSATL---TTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA-----------ILE-SGDWQQQVADIE 340 (429)
T ss_dssp -GTSSSCCEEEE---ECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHH-----------HHH-TCHHHHHHHHHH
T ss_pred -ccccccccchh---hHHHHHhccCCCCCcceeecCCCCCCcccchhhhcccc-----------ccc-cccccchhhHHH
Confidence 54558899998 4888888876431 2467788888888888763 222 234566667777
Q ss_pred HHHHHHhhcC---CCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEE
Q 041151 350 RMMTDGFNSC---RNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLR 426 (463)
Q Consensus 350 ~~l~~~L~~~---pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lR 426 (463)
+++.+.|+++ +.+.-+...| ++.-+.+..|. ....+...+.++||.+.+. + +.+|
T Consensus 341 ~~l~~~L~~l~~~~~v~~vrg~G-l~~~~e~~~~~-------------~~~~~~~~~~~~Gl~~~~~---g-----~~i~ 398 (429)
T d1s0aa_ 341 VQLREQLAPARDAEMVADVRVLG-AIGVVETTHPV-------------NMAALQKFFVEQGVWIRPF---G-----KLIY 398 (429)
T ss_dssp HHHHHHHGGGGGCTTEEEEEEET-TEEEEEESSCB-------------CHHHHHHHHHHTTEECCCB---T-----TEEE
T ss_pred HHHHHHHHHhccCCceEEEeecc-cEEEEEecCcc-------------cHHHHHHHHHHCCcEEEec---C-----CEEE
Confidence 7777777654 3332222233 34444444333 2333456677789998762 2 3699
Q ss_pred EEec--CCcCcHHHHHHHHHHHHHH
Q 041151 427 TTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 427 is~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
++.. .+++||++++++|.+++++
T Consensus 399 ~~Ppl~it~~eid~~~~~l~~al~e 423 (429)
T d1s0aa_ 399 LMPPYIILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred EeCCcCCCHHHHHHHHHHHHHHHHh
Confidence 9976 7899999999999988754
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.54 E-value=5.6e-12 Score=122.51 Aligned_cols=312 Identities=13% Similarity=0.033 Sum_probs=191.3
Q ss_pred cHHHHHHHHHHhhhcCCCCCcc------CCCCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHHHHHhcC
Q 041151 82 PADAIARAKHYLSLTSGGLGAY------SDSRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y------~~~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~ 153 (463)
++.+.+++...+.+- ...+| +..+-+.++.....+...+.++.....- +|-.-+| +.|...++.+|+ +
T Consensus 40 S~~v~~algS~l~nk--YaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SG-s~An~av~~all-~ 115 (463)
T d2a7va1 40 SRAALEALGSCLNNK--YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSG-SPANLAVYTALL-Q 115 (463)
T ss_dssp CHHHHHHHTSGGGTC--CCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSH-HHHHHHHHHHHC-C
T ss_pred CHHHHHHhcchhccc--ccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCcccccc-HHHHHHHHHHHc-C
Confidence 788888887766552 22233 3333344555554555555555443221 4555554 678999999998 9
Q ss_pred CCCEEEEc---cCcee-------------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC
Q 041151 154 EGDGVVLL---FHTTW-------------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT 205 (463)
Q Consensus 154 ~gd~Vlvp---~g~~~-------------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt 205 (463)
|||+|+.. .|+.+ ......+|. +++++..... +||+|++-.-.+|
T Consensus 116 pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDy-d~~~~~a~~~-----kPklIi~G~S~y~- 188 (463)
T d2a7va1 116 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDY-NQLALTARLF-----RPRLIIAGTSAYA- 188 (463)
T ss_dssp SCEECCC-------------------------------CCBCTTTCSBCH-HHHHHHHHHH-----CCSEEEECCSSCC-
T ss_pred CCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcH-HHHHHHHhhc-----CCceEEecccccc-
Confidence 99998874 22111 224566999 9999999987 9999987766665
Q ss_pred ccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 206 G~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
..++ .+++.++|.+.|.++++|-+|-......+ .+.+.... .+ |+.+|.+|+| +|=|.|.
T Consensus 189 -r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g-~~~sP~~~--------aD----vvt~tTHKTl---rGPrgGi 248 (463)
T d2a7va1 189 -RLID---YARMREVCDEVKAHLLADMAHISGLVAAK-VIPSPFKH--------AD----IVTTTTHKTL---RGARSGL 248 (463)
T ss_dssp -SCCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTT-SSCCGGGT--------CS----EEEEESSGGG---CSCSCEE
T ss_pred -cccC---HHHHHHHhhcccceEEechhhhhHHhhhh-hhcChhhh--------hh----hhhchhhhhh---cCCCceE
Confidence 3445 66666677799999999999964433122 22332221 22 7889999999 5888899
Q ss_pred EEecCCC------------hhHHHHHHhhh-hhcccCChHHHHHHHHh-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041151 286 FEMTNIP------------PKTVDEIYKIA-SIALSPNVPAQIFMGLM-VNPLKPGDISYEQFVRESKGILESLRRRARM 351 (463)
Q Consensus 286 ~~~~~~~------------~~~~~~l~~~~-~~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (463)
+.+.++- .++.+++.+.- ....+.+...+.++.+. +. +....+.+.-.++..+|.+.
T Consensus 249 Il~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~---------ea~~~~fk~Ya~qVv~NAk~ 319 (463)
T d2a7va1 249 IFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALK---------QACTPMFREYSLQVLKNARA 319 (463)
T ss_dssp EEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHH---------HHHSHHHHHHHHHHHHHHHH
T ss_pred EEEcccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHH---------HhcCchHHHHHHHHHHHHHH
Confidence 9862100 05666775543 32333444444444332 11 00112233445567888999
Q ss_pred HHHHhhcCCCcccccC-CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee----CCCCCCCCCCCcEEE
Q 041151 352 MTDGFNSCRNVVCNFT-EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV----PGSGFGQKEGIFHLR 426 (463)
Q Consensus 352 l~~~L~~~pg~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~lR 426 (463)
|.+.|.+. |+.+... ..+..++++++- .+ -+...+...|++.||.+. |+..-. .....||
T Consensus 320 La~~L~~~-G~~vv~ggTdnHlvlvdl~~-~~-----------~~G~~ae~~Le~~gI~~Nkn~iP~D~~~--~~~sGiR 384 (463)
T d2a7va1 320 MADALLER-GYSLVSGGTDNHLVLVDLRP-KG-----------LDGARAERVLELVSITANKNTCPGDRSA--ITPGGLR 384 (463)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEECTT-TT-----------CCHHHHHHHHHHTTEECEEECCTTCCCS--SSCSEEE
T ss_pred HHHHHHhC-CCeeecCCCCCceeeeeccc-cC-----------CCHHHHHHHHHhccCccCCccCCCCCCC--CCCCceE
Confidence 99999988 8888742 344566767641 11 145567788999999986 443211 1234699
Q ss_pred EEec------CCcCcHHHHHHHHHHHHH
Q 041151 427 TTIL------PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 427 is~~------~~~e~i~~~~~~l~~~l~ 448 (463)
|... ..++|+.++.+-|.+++.
T Consensus 385 iGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 385 LGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp EESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9987 455788888777777664
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=1.1e-12 Score=130.44 Aligned_cols=328 Identities=9% Similarity=-0.045 Sum_probs=199.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCC---cEEEcCCcHHHHHHHHHHHhc------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPE---LIFLTDGASKGVMQTLNCVIR------ 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~---~i~~t~G~~~al~~~~~~l~~------ 152 (463)
++.+.+.+.+++.. +...+.......++...+.+++.+..|.+-..+ .=.+|+|+++++..++.+.-.
T Consensus 67 ~~~~~~l~~~~~~~---N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~ 143 (450)
T d1pmma_ 67 DENVHKLMDLSINK---NWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 143 (450)
T ss_dssp CHHHHHHHHHTTTC---BTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHh
Confidence 77777777766655 222222222346888999999988888753222 247899999999988876420
Q ss_pred ----CCC-CEEEEc-------------cCcee-----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCC
Q 041151 153 ----GEG-DGVVLL-------------FHTTW-----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCL 209 (463)
Q Consensus 153 ----~~g-d~Vlvp-------------~g~~~-----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~ 209 (463)
.++ ..++++ .|+.+ ...++.+|+ +.|++++++ ++.+|+.+.++|.||.+-
T Consensus 144 ~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~-~~L~~~i~~------~t~~Vv~t~gtt~tG~~d 216 (450)
T d1pmma_ 144 EAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDP-KRMIEACDE------NTIGVVPTFGVTYTGNYE 216 (450)
T ss_dssp HHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCH-HHHHHHCCT------TEEEEECBBSCTTTCBBC
T ss_pred hhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcH-HHHHHHhhh------CceEEEeeeeeccCCCcc
Confidence 122 345554 56655 334689999 999999987 899999899999999999
Q ss_pred CHHHHHHHHH---HhhhCCeEEEecccccccc--cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeE
Q 041151 210 SEANLREILR---FCYQENLVLLGDEVYQQNI--YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGG 284 (463)
Q Consensus 210 s~~~l~~l~~---~a~~~~~~vi~Deay~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G 284 (463)
+.+++.+|++ .|+++|+|+.+|.+|+.+. |........+ .-..-.-+..|.+|++++..| +|
T Consensus 217 pv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~-----------~~~~aDSi~~s~HK~~~~p~g--~g 283 (450)
T d1pmma_ 217 FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDF-----------RLPRVKSISASGHKFGLAPLG--CG 283 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST-----------TSTTEEEEEEETTTTTCCCSS--CE
T ss_pred ccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhh-----------cccceeEeecChhhccCCCCC--ee
Confidence 9887766654 4678999999999997653 2111111110 111124577899997633334 89
Q ss_pred EEEecCCChhHHHHHHhh---------hhhcccCChH-HHHH-HHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 041151 285 YFEMTNIPPKTVDEIYKI---------ASIALSPNVP-AQIF-MGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMT 353 (463)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~-~q~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (463)
|+++ .+++........ ...+...+.. .+.. ....+. .....-.++..++..++.+++.
T Consensus 284 ~l~~--r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~---------~~G~~G~~~~~~~~~~la~~l~ 352 (450)
T d1pmma_ 284 WVIW--RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFL---------RLGREGYTKVQNASYQVAAYLA 352 (450)
T ss_dssp EEEE--SSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEe--cChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHh---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 9997 455442221111 0111222221 2221 121111 0112225567777888899999
Q ss_pred HHhhcCCCcccccC---Ccee-EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEe
Q 041151 354 DGFNSCRNVVCNFT---EGAM-YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTI 429 (463)
Q Consensus 354 ~~L~~~pg~~~~~~---~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~ 429 (463)
+.|++.+++++..+ +.+. .+..++.-... ..-+...+...|.++|..|..............+|+.+
T Consensus 353 ~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~~~~---------~~~~~~~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv 423 (450)
T d1pmma_ 353 DEIAKLGPYEFICTGRPDEGIPAVCFKLKDGED---------PGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMC 423 (450)
T ss_dssp HHHHTTSCEEEEEECCTTTBSSEEEEEECTTCC---------CSSCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEEC
T ss_pred HHHHhCCCeEEEeCCCCCCceEEEEEecCCccc---------CCCCHHHHHHHHHHcCCeeeccCcCCCcCCcEEEEEEc
Confidence 99999988887632 2222 22222221110 00022334567888997663211111112335799999
Q ss_pred c--CCcCcHHHHHHHHHHHHHHHHH
Q 041151 430 L--PAEEDMPAIMESFKKFNDEFME 452 (463)
Q Consensus 430 ~--~~~e~i~~~~~~l~~~l~~~~~ 452 (463)
. .+.++++++++.|+++++++++
T Consensus 424 ~~~~t~e~~d~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 424 RRGFEMDFAELLLEDYKASLKYLSD 448 (450)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9 6888999999999999998875
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.2e-13 Score=138.78 Aligned_cols=308 Identities=17% Similarity=0.109 Sum_probs=180.3
Q ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEE---------c----------
Q 041151 101 GAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVL---------L---------- 161 (463)
Q Consensus 101 ~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv---------p---------- 161 (463)
..|+......+|++.++++++ .+.+++++++++|+..++.+++ ++|+.++. .
T Consensus 68 ~~Y~~~~~~~~le~~~a~l~G--------~~~~~~~~sGt~A~~~a~~~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 138 (467)
T d2v1pa1 68 EAFSGSRSYYALAESVKNIFG--------YQYTIPTHQGRGAEQIYIPVLI-KKREQEKGLDRSKMVAFSNYFFDTTQGH 138 (467)
T ss_dssp CCSSSCHHHHHHHHHHHHHTC--------CSEEEEECSSTTTHHHHHHHHH-HHHHHHHCCCTTTCEEEESSCCHHHHHH
T ss_pred hhhcCCchHHHHHHHHHHHHC--------CCEEEECCCCHHHHHHHHHHHh-hccceEecCCCCcEEEEecccccccHHH
Confidence 457766677889999998864 5678888888999999999997 66654322 2
Q ss_pred ---cCcee--------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC-ccCCCHHHHHHHHHHhhh
Q 041151 162 ---FHTTW--------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT-GQCLSEANLREILRFCYQ 223 (463)
Q Consensus 162 ---~g~~~--------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt-G~~~s~~~l~~l~~~a~~ 223 (463)
.|..+ ......+|+ +.|++.+++.... .+.+|++.+.+|.. |.+++.+++++|.++|++
T Consensus 139 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~-~~l~~~i~~~~~~--~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~ 215 (467)
T d2v1pa1 139 SQINGCTVRNVYIKEAFDTGVRYDFKGNFDL-EGLERGIEEVGPN--NVPYIVATITSNSAGGQPVSLANLKAMYSIAKK 215 (467)
T ss_dssp HHHTTCEEEECBCTTTTCTTSCCTTTTCBCH-HHHHHHHHHHCGG--GCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHH
T ss_pred HHHcCCeeeecccccccccccccccccCCCH-HHHHHHHhhcCcc--ccceeeecceeeccccccCCHHHHHHHHHHHHH
Confidence 34333 112456899 9999999875322 46777777776655 678899999999999999
Q ss_pred CCeEEEeccccccccc------CCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHH
Q 041151 224 ENLVLLGDEVYQQNIY------QDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVD 297 (463)
Q Consensus 224 ~~~~vi~Deay~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~ 297 (463)
||+++++|+++..... ..+....++..+.+++ ... ..++..|.+|.+ + +...|+++. .+..+..
T Consensus 216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~-~d~~s~s~~K~~-~--~~~gg~i~~--~~~~~~~ 285 (467)
T d2v1pa1 216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRET----YKY-ADMLAMSAKKDA-M--VPMGGLLCM--KDDSFFD 285 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHH----GGG-CSEEEEESSSTT-C--CSSCEEEEE--CSGGGHH
T ss_pred cCCEEEEechhhhccccccccccccccCCcccccchhh----ccc-CCEEEecCCCCC-C--CCCceeEEe--cchhhhh
Confidence 9999999999753210 0011122333333333 111 125667888977 3 455778775 3444433
Q ss_pred HHHhhhh---------hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCC
Q 041151 298 EIYKIAS---------IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNFTE 368 (463)
Q Consensus 298 ~l~~~~~---------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~~~ 368 (463)
....... ...+.+.....+....+. .....+..++..++.+++.+.|.+. ++.+.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~ 352 (467)
T d2v1pa1 286 VYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY------------DGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQQAG 352 (467)
T ss_dssp HHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH------------HTTCHHHHHHHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred HHHhhcccccccccCcchhhhHHHHHHHHHHHhH------------HhhhHHHHHHHHHHHHHHHHHHHhc-CCcccCCC
Confidence 3332221 011222223333332221 1111223344566778888889887 55444333
Q ss_pred cee-EEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCC----------CCCCCCCCcEEEEEec---CCcC
Q 041151 369 GAM-YSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGS----------GFGQKEGIFHLRTTIL---PAEE 434 (463)
Q Consensus 369 g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~----------~f~~~~~~~~lRis~~---~~~e 434 (463)
+.. +.....-++.... . .......+..++.+.||...... ....+.....+|+++. .+++
T Consensus 353 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~ll~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~e 426 (467)
T d2v1pa1 353 GHAAFVDAGKLLPHIPA-----D-QFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQT 426 (467)
T ss_dssp SSCEEEEHHHHSTTSCG-----G-GCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHH
T ss_pred ccceeecchhhcCCcch-----h-hhhhHHHHHHHHHHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHH
Confidence 222 2111111121100 0 01134456677889998654221 1111233457999986 4889
Q ss_pred cHHHHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKFNDE 449 (463)
Q Consensus 435 ~i~~~~~~l~~~l~~ 449 (463)
||+.++++|+++.++
T Consensus 427 eiD~vv~~l~~v~~~ 441 (467)
T d2v1pa1 427 HMDFIIEAFKHVKEN 441 (467)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888754
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.53 E-value=8.2e-12 Score=121.73 Aligned_cols=312 Identities=11% Similarity=-0.005 Sum_probs=192.5
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC------CCCCHHHHHHHHHHHHHhcCCCCCCC--cEEEcCCcHHHHHHHHHHHhcC
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD------SRGIPGVRKEVAEFIERRDGYPSDPE--LIFLTDGASKGVMQTLNCVIRG 153 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~------~~g~~~lr~~ia~~~~~~~g~~~~~~--~i~~t~G~~~al~~~~~~l~~~ 153 (463)
++.+.+++...+.+. ...+|+. .+-+.++.....+...+.++...+.. +|..- +++.|...++.+|+ +
T Consensus 44 S~~v~~algS~l~nk--YaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~-SGs~An~av~~all-~ 119 (470)
T d1rv3a_ 44 SRAVLEALGSCLNNK--YSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY-SGSPANFAVYTALV-E 119 (470)
T ss_dssp CHHHHHHHTSGGGTC--CCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHHT-C
T ss_pred CHHHHHHhcchhccc--ccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhcccccccc-CCccHHHHHHHHhc-C
Confidence 788888887777652 2233332 22223444444445555555432222 33333 45778999999998 9
Q ss_pred CCCEEEEc---cCcee-------------------------cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCC
Q 041151 154 EGDGVVLL---FHTTW-------------------------KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPT 205 (463)
Q Consensus 154 ~gd~Vlvp---~g~~~-------------------------~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPt 205 (463)
|||+|+.. .|+.+ ..+.+.+|. +++++..... +||+|++-.-.+|
T Consensus 120 pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDy-d~l~~~a~~~-----kPklIi~G~S~y~- 192 (470)
T d1rv3a_ 120 PHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDY-DRLEENARLF-----HPKLIIAGTSCYS- 192 (470)
T ss_dssp TTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCH-HHHHHHHHHH-----CCSEEEECCSSCC-
T ss_pred CCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccH-HHHHHHHHhh-----CcceEeechhhcc-
Confidence 99999985 22221 234578999 9999999887 9999987766665
Q ss_pred ccCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEE
Q 041151 206 GQCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGY 285 (463)
Q Consensus 206 G~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~ 285 (463)
..++ .+++.++|.+.+.+|+.|-+|-......+. ..+.... . .|+.+|.+|+| +|=|.|.
T Consensus 193 -r~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~-~~sPl~~--------a----Dvvt~tTHKtl---rGPrgGi 252 (470)
T d1rv3a_ 193 -RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGV-VPSPFEH--------C----HVVTTTTHKTL---RGCRAGM 252 (470)
T ss_dssp -SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-SCCGGGT--------C----SEEEEESSGGG---CCCSCEE
T ss_pred -ccCC---HHHHHHHHhccCCeEEecchhhhhhccccc-cCChhhe--------e----eeeeeehhhhc---cCCcceE
Confidence 4455 566666777999999999999543321222 2232221 2 27889999998 5888899
Q ss_pred EEecCCC------------hhHHHHHHhhh-hhcccCChHHHHHHHH-hcCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 041151 286 FEMTNIP------------PKTVDEIYKIA-SIALSPNVPAQIFMGL-MVNPLKPGDISYEQFVRESKGILESLRRRARM 351 (463)
Q Consensus 286 ~~~~~~~------------~~~~~~l~~~~-~~~~~~~~~~q~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (463)
+.+.++- .++.+++.+.- ....+.+...+.++.+ ++.. ....+.+.-.++..+|.+.
T Consensus 253 I~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~e---------a~~~~fk~Ya~qvv~NAk~ 323 (470)
T d1rv3a_ 253 IFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQ---------AMTPEFKEYQRQVVANCRA 323 (470)
T ss_dssp EEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH---------HTSHHHHHHHHHHHHHHHH
T ss_pred EEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHH---------hcChHHHHHHHHHHHHHHH
Confidence 9862210 03666665543 3233344444444433 2210 0011233445567888999
Q ss_pred HHHHhhcCCCccccc-CCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEee----CCCCCCCCCCCcEEE
Q 041151 352 MTDGFNSCRNVVCNF-TEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTV----PGSGFGQKEGIFHLR 426 (463)
Q Consensus 352 l~~~L~~~pg~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~----pg~~f~~~~~~~~lR 426 (463)
|.+.|.+. |+.+.. ...+..+++++.- .+ -+...+.+.|++.||.+. |++... -....+|
T Consensus 324 La~~L~~~-G~~v~~ggTdnHlvlvdl~~-~g-----------~~g~~ae~~Le~~gI~~Nkn~iP~D~~~--~~~sGiR 388 (470)
T d1rv3a_ 324 LSAALVEL-GYKIVTGGSDNHLILVDLRS-KG-----------TDGGRAEKVLEACSIACNKNTCPGDKSA--LRPSGLR 388 (470)
T ss_dssp HHHHHHHT-TCEEGGGSCSSSEEEEEGGG-GT-----------CCHHHHHHHHHHTTEECEEECCSSCSCT--TSCCEEE
T ss_pred HHHHHHhC-CceeccCCCCCceEEEeecc-cC-----------CcHHHHHHHHHHcCcEECCCcCCCCCCC--CCCCeeE
Confidence 99999987 888764 2334566766641 11 134457788999999886 544211 1223699
Q ss_pred EEec------CCcCcHHHHHHHHHHHHH
Q 041151 427 TTIL------PAEEDMPAIMESFKKFND 448 (463)
Q Consensus 427 is~~------~~~e~i~~~~~~l~~~l~ 448 (463)
|+.. ..++|+.++.+-|.++++
T Consensus 389 iGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 389 LGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp EECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9987 466788888777777764
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.52 E-value=8.9e-14 Score=139.62 Aligned_cols=306 Identities=11% Similarity=0.070 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhcCCCCEEEEc--------------cCcee-----c
Q 041151 108 GIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIRGEGDGVVLL--------------FHTTW-----K 167 (463)
Q Consensus 108 g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp--------------~g~~~-----~ 167 (463)
-+.++++.+|++++ .+ .+++++|++.++..++.+++ +|||+|+++ .+..+ .
T Consensus 67 ~i~eae~~~A~~~g--------a~~a~f~~~Gtt~~n~a~i~a~~-~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~ 137 (462)
T d1c4ka2 67 PAVAAEKHAARVYN--------ADKTYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTN 137 (462)
T ss_dssp HHHHHHHHHHHHTT--------CSEEEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEE
T ss_pred HHHHHHHHHHHHhC--------CCeEEEECCchHHHHHHHHHHhc-CCCCeEEecccchHHHHHHHHHHhcCCceeeecc
Confidence 34688889999875 34 55666777888888899997 999999998 11111 1
Q ss_pred CCC---------cccChHHHHHHHHHH---HHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEeccccc
Q 041151 168 RQQ---------IGVLIINDLQQSVAQ---ARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQ 235 (463)
Q Consensus 168 ~~~---------~~~d~~~~l~~~l~~---~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~ 235 (463)
.+. ..++. +.+++.+.. ......+++.+++...+|-+|.+.+ +++|+++|++++++|++|++|.
T Consensus 138 ~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~ 213 (462)
T d1c4ka2 138 RNPYGFIGGIYDSDFDE-KKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWV 213 (462)
T ss_dssp ECTTCCEEEECGGGSCH-HHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGGBSEEEEECTTC
T ss_pred cccccccCCCChHHhhH-HHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHcCCEEEEechhh
Confidence 111 12232 333222111 0111225566666655566899988 7778889999999999999997
Q ss_pred ccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHH---------HHHHhhhh--
Q 041151 236 QNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTV---------DEIYKIAS-- 304 (463)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~---------~~l~~~~~-- 304 (463)
......+....+......+.+ .+.+..+++.|++|++ |.++ .|.++.. +...+ +.+.+...
T Consensus 214 ~~~~~~~~~~~~~~~~g~~~~---~~~~~D~~~~S~HK~l-g~~~--~g~ll~~--~~~~~~~~~~~~~~~~~~~~~~~~ 285 (462)
T d1c4ka2 214 GYEQFIPMMRNSSPLLIDDLG---PEDPGIIVVQSVHKQQ-AGFS--QTSQIHK--KDSHIKGQLRYCDHKHFNNSFNLF 285 (462)
T ss_dssp CGGGSSGGGGGGCTTSCCCCC---TTSCEEEEEECHHHHS-SCCT--TCEEEEE--ECGGGTTSTTCCCHHHHHHHHHHH
T ss_pred ccccccCcCCcchhhcccccc---ccCCccEEEEecCccc-cccc--ceEEEEe--ccccccccchhhhHHHHHHhhhhc
Confidence 643211111111111000000 1122468999999998 5444 3444431 22221 23333322
Q ss_pred hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc------------------
Q 041151 305 IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVVCNF------------------ 366 (463)
Q Consensus 305 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~~~~------------------ 366 (463)
.+.+++......+..+.. +. .....+++.++..++.+.+++.+.+.++.....
T Consensus 286 ~t~sp~~~~~asl~~a~~--------~~-~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 356 (462)
T d1c4ka2 286 MSTSPFYPMYAALDVNAA--------MQ-EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDM 356 (462)
T ss_dssp SCSSCCHHHHHHHHHHHH--------HH-SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHH
T ss_pred ccCCchHHHHHHHHHHHH--------HH-HhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhh
Confidence 133344433333333221 00 011123455566677777777776653321100
Q ss_pred ----------C----------CceeEEe----eeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCC
Q 041151 367 ----------T----------EGAMYSF----PQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGI 422 (463)
Q Consensus 367 ----------~----------~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~ 422 (463)
| ....+.. +.+..+.-...........-....+.+.|.++||.+.- .+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~-------~~~ 429 (462)
T d1c4ka2 357 ANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK-------SDL 429 (462)
T ss_dssp TTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE-------ECS
T ss_pred hcccchhccCCcchhccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeec-------cCC
Confidence 0 0000100 00110000000000000001234456778889986533 233
Q ss_pred cEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 423 FHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 423 ~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
..+|++++ .+++++++++++|+++.+.+
T Consensus 430 ~~i~~~~s~~~T~edid~li~aL~ei~r~~ 459 (462)
T d1c4ka2 430 NSILFLMTPAETPAKMNNLITQLLQLQRLI 459 (462)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 47999998 78999999999998876554
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.52 E-value=2.8e-13 Score=133.36 Aligned_cols=305 Identities=10% Similarity=0.013 Sum_probs=175.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc---------
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR--------- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--------- 152 (463)
++.+++++.+.+.+. .|....-+....+.+++.+... ...+.+.++++++++...+++....
T Consensus 57 ~p~v~~Ai~~q~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~ 127 (404)
T d1z7da1 57 HPNILNAMINQAKNL-----TICSRAFFSVPLGICERYLTNL----LGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIP 127 (404)
T ss_dssp CHHHHHHHHHHHTTC-----SCCCTTSEEHHHHHHHHHHHHH----HTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred cHHHHHHHHHHHHhC-----CCcccccchHHHHHHHHhhhhc----cccceeeeeccccchHHHHHHHHHHHHhhccccc
Confidence 788999998888763 2222111233344455555443 2356888999999999988876530
Q ss_pred CCCCEEEEc----cCcee------------------cCCCc---ccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc
Q 041151 153 GEGDGVVLL----FHTTW------------------KRQQI---GVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ 207 (463)
Q Consensus 153 ~~gd~Vlvp----~g~~~------------------~~~~~---~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~ 207 (463)
.....++.. +|... ..... .-+. +.++..+.+. ++-+|++.--....|.
T Consensus 128 ~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~-----~iAavi~EPi~g~~G~ 201 (404)
T d1z7da1 128 ENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDL-EALEEELKDP-----NVCAFIVEPIQGEAGV 201 (404)
T ss_dssp TTCCEEEEETTC--------------------------CEEEECTTCH-HHHHHHHTST-----TEEEEEECSSBSTTTS
T ss_pred ccccccccccccCCCCcccccccccccccccCCCCCCccccccccchH-HHHHHHhcCC-----CEEEEEEEEEcCCCCC
Confidence 111234433 11111 01111 1134 5666555431 5677666533444565
Q ss_pred C-CCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEE
Q 041151 208 C-LSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYF 286 (463)
Q Consensus 208 ~-~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 286 (463)
. .+++-+++|.++|++||+++|.||++..+.-. +.. ..+. .+|+ ..+ | -+++|.+ +-.+..+|.+
T Consensus 202 ~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRt-G~~-~~~e----~~gv--~PD---i--vt~gK~l-~gG~~p~~~v 267 (404)
T d1z7da1 202 IVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT-GKL-LCVH----HYNV--KPD---V--ILLGKAL-SGGHYPISAV 267 (404)
T ss_dssp BCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSS-SGGG----GGTC--CCS---E--EEECGGG-GTTSSCCEEE
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcc-ccc-cccc----ccCC--CCC---E--EEEcccc-cCCCCCcccc
Confidence 4 45666899999999999999999999865211 111 1111 1211 221 2 3799999 5333789999
Q ss_pred EecCCChhHHHHHHhhhh-hcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHH----HHHHHhhcCCC
Q 041151 287 EMTNIPPKTVDEIYKIAS-IALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRAR----MMTDGFNSCRN 361 (463)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~L~~~pg 361 (463)
+ +++++.+.+..... .+++.++++..++.+.|+ .+. .+...+...++.+ .+.+.+++.+.
T Consensus 268 ~---~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~-----------~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 332 (404)
T d1z7da1 268 L---ANDDIMLVIKPGEHGSTYGGNPLAASICVEALN-----------VLI-NEKLCENAEKLGGPFLENLKRELKDSKI 332 (404)
T ss_dssp E---ECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHH-----------HHH-HTTHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred c---chHHHHccCCCCCcCcCCCCCcchhhhhhhhhh-----------hhh-cchhhhhhccchhHHHHHHHHHHhcCCC
Confidence 8 48888776655443 467788988888888763 111 1123333333333 34444444443
Q ss_pred cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHH
Q 041151 362 VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAI 439 (463)
Q Consensus 362 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~ 439 (463)
+.-+...|.+ ..+.+.-+.. ...+ +...+.++||.+.+. +.+.+|++.+ .++++++++
T Consensus 333 v~~vrg~Gl~-~~i~~~~~~~-----------~~~~-~~~~l~~~Gl~~~~~-------~~~~ir~~Ppl~it~~~id~~ 392 (404)
T d1z7da1 333 VRDVRGKGLL-CAIEFKNELV-----------NVLD-ICLKLKENGLITRDV-------HDKTIRLTPPLCITKEQLDEC 392 (404)
T ss_dssp EEEEEEETTE-EEEEECTTTC-----------CHHH-HHHHHHHTTEECCEE-------TTTEEEECCCTTCCHHHHHHH
T ss_pred eEEEEeeCcE-EEEEEcCCcc-----------cHHH-HHHHHHhCCeEEecC-------CCCEEEEECCcCCCHHHHHHH
Confidence 3333334433 3333332211 1233 345567789998662 2236899876 789999999
Q ss_pred HHHHHHHHHHH
Q 041151 440 MESFKKFNDEF 450 (463)
Q Consensus 440 ~~~l~~~l~~~ 450 (463)
+++|.++++++
T Consensus 393 ~~~l~~alk~~ 403 (404)
T d1z7da1 393 TEIIVKTVKFF 403 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999999765
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.50 E-value=5.8e-14 Score=139.27 Aligned_cols=312 Identities=15% Similarity=0.122 Sum_probs=180.2
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
+|.+++++.+++.+. .. +.. .......+++.+.+..+ ..+.+++++++++|++.+++.... .....|+.
T Consensus 70 hp~i~~ai~~~~~~~---~~-~~~---~~~~~~~la~~~~~~~~---~~~~v~f~~sGseA~e~Alk~ar~~t~r~~ii~ 139 (427)
T d2gsaa_ 70 HPEVIEALKVAMEKG---TS-FGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGTEACMAVLRLMRAYTGRDKIIK 139 (427)
T ss_dssp CHHHHHHHHHHHTTC---SC-CSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred cHHHHHHHHHHHHhc---Cc-ccc---chhHHHHHHHHHHhhCC---ccccccccCCcHHHHHHHHHHHHHhcCCCeEEE
Confidence 789999999888762 11 111 13456667777765432 336889999999999999996531 23345555
Q ss_pred c----cCcee---------------c----------C---CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCcc-
Q 041151 161 L----FHTTW---------------K----------R---QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQ- 207 (463)
Q Consensus 161 p----~g~~~---------------~----------~---~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~- 207 (463)
- +|... + . ....-|+ +.+++.+++. ..++.+|++.--..-.|.
T Consensus 140 ~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~le~~~~~~---~~~iaavi~Epi~g~~G~~ 215 (427)
T d2gsaa_ 140 FEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDL-EAVKALFAEN---PGEIAGVILEPIVGNSGFI 215 (427)
T ss_dssp ETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCH-HHHHHHHTTS---TTTEEEEEECSSBCSSSCB
T ss_pred EecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchH-HHHHHHHHhC---CCCeEEEEEcCCcCCCCCc
Confidence 3 22211 0 0 0112477 8899888752 125667666522222454
Q ss_pred CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEE
Q 041151 208 CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFE 287 (463)
Q Consensus 208 ~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~ 287 (463)
..+.+-+++|.++|++||+++|.||++..+.. +.. ... ..+++ ..+ | -+++|.+ | .|+.+|.++
T Consensus 216 ~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~--g~~-~~~----~~~gi--~PD---i--~~~gK~l-g-gG~p~~a~~ 279 (427)
T d2gsaa_ 216 VPDAGFLEGLREITLEHDALLVFDEVMTGFRI--AYG-GVQ----EKFGV--TPD---L--TTLGKII-G-GGLPVGAYG 279 (427)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEECTTTBTTT--BTT-CHH----HHTTC--CCS---E--EEECGGG-G-TTSCCEEEE
T ss_pred cCCHHHHHHHHHHHHHhceeeeecccccccee--ccc-chH----HhcCC--CHH---H--Hhhhhcc-C-CCcceeeee
Confidence 45667799999999999999999999987532 211 111 12221 221 2 4578888 4 588999888
Q ss_pred ecCCChhHHHHHHhhh----hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---C
Q 041151 288 MTNIPPKTVDEIYKIA----SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSC---R 360 (463)
Q Consensus 288 ~~~~~~~~~~~l~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---p 360 (463)
+++++.+.+.... ..+++.++++..++.+.|+ .+++ .++.++++++.+++.+.|+++ .
T Consensus 280 ---~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le-----------~i~~-~~l~~~~~~~g~~l~~~L~~l~~~~ 344 (427)
T d2gsaa_ 280 ---GKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLE-----------LLRQ-PGTYEYLDQITKRLSDGLLAIAQET 344 (427)
T ss_dssp ---ECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHH-----------HHTS-TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---ehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhH-----------Hhhh-hhHHhhhhHHHHHHHHHHHHHHhhc
Confidence 5888887775422 2356778888888877763 1111 123444555555555555432 1
Q ss_pred Cccc-ccCCceeEEeeeccCC-hhhHHHHhhcCCCCh--HHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEecCCcCcH
Q 041151 361 NVVC-NFTEGAMYSFPQIRLP-PKAIEAAKRAGKVPD--VFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTILPAEEDM 436 (463)
Q Consensus 361 g~~~-~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~~~~e~i 436 (463)
++.+ ...-++++.+.-...+ ....+ ....+. ...+...+.++||++.|+. +. .+-+++..+++||
T Consensus 345 ~~~~~v~~~ggm~~i~~~~~~v~~~~~----~~~~d~~~~~~~~~~ll~~Gv~l~p~~-~~------~~~~~l~~Te~dI 413 (427)
T d2gsaa_ 345 GHAACGGQVSGMFGFFFTEGPVHNYED----AKKSDLQKFSRFHRGMLEQGIYLAPSQ-FE------AGFTSLAHTEEDI 413 (427)
T ss_dssp TCCCEEEEETTEEEEESSSCCCCSHHH----HTTSCHHHHHHHHHHHHHTTEECCSST-TS------CEECCTTCCHHHH
T ss_pred CCCcEEcccCCeEEEEEeccCCCCHHH----hhcccHHHHHHHHHHHHHCCEEECCCC-Cc------ceeCCCCCCHHHH
Confidence 2222 2222333322112211 11100 000111 1223344567899988743 11 1235666899999
Q ss_pred HHHHHHHHHHHHH
Q 041151 437 PAIMESFKKFNDE 449 (463)
Q Consensus 437 ~~~~~~l~~~l~~ 449 (463)
++++++|++++++
T Consensus 414 d~~l~al~~al~~ 426 (427)
T d2gsaa_ 414 DATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.49 E-value=1.3e-12 Score=127.23 Aligned_cols=298 Identities=10% Similarity=0.026 Sum_probs=181.4
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCC--CEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG--DGVV 159 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~g--d~Vl 159 (463)
.++.++++.+.+.+ .....++ -...++++++++++ .+.++.+++++.|+.+++.++-..+| ++|+
T Consensus 11 ~~~~~~~v~~~l~~---~~~~~G~--~v~~fE~~~~~~~g--------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi 77 (371)
T d2fnua1 11 DKEDKKAVLEVLNS---KQLTQGK--RSLLFEEALCEFLG--------VKHALVFNSATSALLTLYRNFSEFSADRNEII 77 (371)
T ss_dssp CHHHHHHHHHHHTS---SCCSSSH--HHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEE
T ss_pred CHHHHHHHHHHHcC---CCccCCH--HHHHHHHHHHHHHC--------cCeEEEEecHHHHHHHHHHHhcccCCCCCeee
Confidence 67888888888876 2222232 35788888988875 45678888889999999999842344 4899
Q ss_pred Ec-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhh
Q 041151 160 LL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCY 222 (463)
Q Consensus 160 vp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~ 222 (463)
+| .|.++ .+.....+. +.+++.+.+ ++++|++++ .-|...+ +++|.++|+
T Consensus 78 ~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~~~-~~~~~~~~~------~t~avi~vh---~~G~~~~---~~~i~~~~~ 144 (371)
T d2fnua1 78 TTPISFVATANMLLESGYTPVFAGIKNDGNIDE-LALEKLINE------RTKAIVSVD---YAGKSVE---VESVQKLCK 144 (371)
T ss_dssp ECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCG-GGSGGGCCT------TEEEEEEEC---GGGCCCC---HHHHHHHHH
T ss_pred cccccccccceeeeccCcccccccccccccccc-hhhhhhccc------hhhcccccc---ccccccc---ccccccccc
Confidence 98 77777 333445566 777777766 899998774 4566666 667777888
Q ss_pred hCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecC--CcccCCCCCceeEEEEecCCChhHHHHHH
Q 041151 223 QENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTV--SKGYWGECGQRGGYFEMTNIPPKTVDEIY 300 (463)
Q Consensus 223 ~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~g~~G~R~G~~~~~~~~~~~~~~l~ 300 (463)
+++++||+|.+++......+....++ + .+.+.|| +|.+ +. | -.|.+++ .++++.++++
T Consensus 145 ~~~i~lIEDaaqa~Ga~~~~~~~G~~-----------g----~~~~~Sf~~~K~l-~~-g-~GG~i~t--~~~~~~~~~~ 204 (371)
T d2fnua1 145 KHSLSFLSDSSHALGSEYQNKKVGGF-----------A----LASVFSFHAIKPI-TT-A-EGGAVVT--NDSELHEKMK 204 (371)
T ss_dssp HHTCEEEEECTTCTTCEETTEETTSS-----------S----SEEEEECCTTSSS-CC-S-SCEEEEE--SCHHHHHHHH
T ss_pred ccchhhccchhhccCceeccccCCcc-----------c----ccccccccccccc-cc-c-cceEEEe--echhhhhhcc
Confidence 99999999999987543122221111 1 1455566 7887 43 3 3788887 5788888888
Q ss_pred hhhhhc-----------------ccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 041151 301 KIASIA-----------------LSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRNVV 363 (463)
Q Consensus 301 ~~~~~~-----------------~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg~~ 363 (463)
.....+ +..+.+....+... ++.++...++-+++.+.+.+.|.+.+++.
T Consensus 205 ~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~q--------------L~~l~~~~~~R~~~~~~y~~~l~~~~~~~ 270 (371)
T d2fnua1 205 LFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQ--------------LKKAPFLMQKREEAALTYDRIFKDNPYFT 270 (371)
T ss_dssp HHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHH--------------HTTHHHHHHHHHHHHHHHHHHHTTCSSEE
T ss_pred cccccccccccccccccccccccccccchhhhhhhhh--------------hhhccchhhhhhhhhhhhccccccccccc
Confidence 765311 11222222222222 22333444445556667777888776665
Q ss_pred cccC----CceeE-EeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCC---------CCC--------
Q 041151 364 CNFT----EGAMY-SFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQ---------KEG-------- 421 (463)
Q Consensus 364 ~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~---------~~~-------- 421 (463)
...+ ...++ ..+.+..+.. ...+.+.+.|+++||.+++....-. ..+
T Consensus 271 ~~~~~~~~~~~~~~~~i~~~~~~~-----------~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~ 339 (371)
T d2fnua1 271 PLHPLLKDKSSNHLYPILMHQKFF-----------TCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDF 339 (371)
T ss_dssp ESGGGCSSCCCCSCEEEEECGGGG-----------GGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHH
T ss_pred ccccccccccccccccccccccch-----------hHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHH
Confidence 5432 11111 1111221111 1233455667889999876432100 011
Q ss_pred -CcEEEEEec--CCcCcHHHHHHHHHHHHHHH
Q 041151 422 -IFHLRTTIL--PAEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 422 -~~~lRis~~--~~~e~i~~~~~~l~~~l~~~ 450 (463)
...+.|-+. .+.+|++..++.|+++++++
T Consensus 340 ~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~~ 371 (371)
T d2fnua1 340 YHAEISLPCHANLNLESVQNIAHSVLKTFESF 371 (371)
T ss_dssp HHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCeEECcCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 124555444 68899999999998887764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.41 E-value=1e-11 Score=123.06 Aligned_cols=322 Identities=10% Similarity=0.007 Sum_probs=174.0
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc-CCCCEEEE
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-GEGDGVVL 160 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-~~gd~Vlv 160 (463)
++.+.+++.+.+.+.. |.......+.+..+|+.+.+... -.-+.+++++++++|++.+++.... ...+.|+.
T Consensus 59 ~p~v~~ai~~q~~~~~-----~~~~~~~~~~~~~la~~L~~~~~--~~~~~v~f~~sGseA~e~Alk~Ar~~t~r~~i~~ 131 (431)
T d1zoda1 59 HPEIVSVIGEYAGKLD-----HLFSEMLSRPVVDLATRLANITP--PGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVG 131 (431)
T ss_dssp CHHHHHHHHHHHHHCC-----CCCTTCCCHHHHHHHHHHHHHSC--TTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHhhcc-----ccccccccHHHHHHHHHHHHhCC--cccceeeecccccchHHHHHHHHHHhcCCcceee
Confidence 7899999999988732 21111123344556666654321 1346899999999999999997521 22344544
Q ss_pred c----cCcee----------------------------------cCCCcccChHHHHHHHHHHHHhcC-CceeEEEEECC
Q 041151 161 L----FHTTW----------------------------------KRQQIGVLIINDLQQSVAQARSKG-ITVRAMVIINP 201 (463)
Q Consensus 161 p----~g~~~----------------------------------~~~~~~~d~~~~l~~~l~~~~~~~-~~~~~i~l~~p 201 (463)
- +|... .......+. +.++.........+ .++.+|++.--
T Consensus 132 ~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iAavi~EPi 210 (431)
T d1zoda1 132 FAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYL-AELDYAFDLIDRQSSGNLAAFIAEPI 210 (431)
T ss_dssp ETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHH-HHHHHHHHHHHHHCCSCEEEEEECSE
T ss_pred cccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhh-hhHHHHHHHHHHhccccccceeeccc
Confidence 3 22110 000111122 33433332211111 24666655522
Q ss_pred CCCCcc-CCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCC
Q 041151 202 GNPTGQ-CLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECG 280 (463)
Q Consensus 202 ~NPtG~-~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G 280 (463)
..-.|. ..+++-+++|.++|++||+++|.||++..+.-. +.. .... .+|+ ..+ +-+++|.+. .|
T Consensus 211 ~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRt-G~~-~~~~----~~gv--~PD-----i~~~gK~l~--gG 275 (431)
T d1zoda1 211 LSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT-GTM-FACQ----RDGV--TPD-----ILTLSKTLG--AG 275 (431)
T ss_dssp ETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSS-STHH----HHTC--CCS-----EEEECHHHH--TT
T ss_pred cccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccc-ccc-cccc----cCCC--Ccc-----hhccccccc--cc
Confidence 222344 467888999999999999999999999874221 111 1111 1221 222 245889984 68
Q ss_pred ceeEEEEecCCChhHHHHHHhhh---hhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 041151 281 QRGGYFEMTNIPPKTVDEIYKIA---SIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGF- 356 (463)
Q Consensus 281 ~R~G~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L- 356 (463)
+.++.+++ .++..+.+.... ..+++.++++..++.+.++ .+. .+...++..+..+.+.+.+
T Consensus 276 ~p~~av~~---~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~-----------~i~-~~~~~~~~~~~g~~l~~~l~ 340 (431)
T d1zoda1 276 LPLAAIVT---SAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLD-----------VVQ-RDGLVARANVMGDRLRRGLL 340 (431)
T ss_dssp SSCEEEEE---CHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHH-----------HHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred cccceeee---eecchhhhhcccccccCCCCCCcchHHHHHHHHH-----------Hhh-hhhhhHHHHHHHHHHhhhhh
Confidence 88888884 777777665432 2456777877777777653 111 1223333333333343333
Q ss_pred ---hcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--C
Q 041151 357 ---NSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--P 431 (463)
Q Consensus 357 ---~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~ 431 (463)
.+.|-+.-+...|.++.+ .+..+... ......-...+...+.++|+....-. .....+.+|++.+ .
T Consensus 341 ~~~~~~~~i~~vrG~Glm~~i-e~~~~~~~-----~~~~~~~~~~i~~~~~~~Gl~~~~~~---~~~~~~~i~l~Ppl~i 411 (431)
T d1zoda1 341 DLMERFDCIGDVRGRGLLLGV-EIVKDRRT-----KEPADGLGAKITRECMNLGLSMNIVQ---LPGMGGVFRIAPPLTV 411 (431)
T ss_dssp HHHHHCTTEEEEEEETTEEEE-EEEEETTT-----TEECTTHHHHHHHHHHHTTEECCEEC---CTTSCCEEEECCCTTC
T ss_pred hhhhcCCCeEEEeecceEEEE-EEecCCcc-----cCccHHHHHHHHHHHHHhCcccCeee---ecCCCCEEEEECCCCC
Confidence 334322223334443322 12100000 00000112233455677898643211 1122347999987 7
Q ss_pred CcCcHHHHHHHHHHHHHHH
Q 041151 432 AEEDMPAIMESFKKFNDEF 450 (463)
Q Consensus 432 ~~e~i~~~~~~l~~~l~~~ 450 (463)
+++|+++++++|.+++++.
T Consensus 412 t~~eid~~~~~l~~al~~v 430 (431)
T d1zoda1 412 SEDEIDLGLSLLGQAIERA 430 (431)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999864
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.34 E-value=9.6e-12 Score=124.16 Aligned_cols=310 Identities=10% Similarity=0.068 Sum_probs=172.0
Q ss_pred cHHHHHHHHHHhhhcCC-CCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhc--------
Q 041151 82 PADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIR-------- 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~-------- 152 (463)
++.+.+++.+.+..... ....+.. .....+.+.+++.+..... -.-+.+++++++++|+..+++....
T Consensus 71 ~p~v~~ai~~q~~~~~~~~~~~~~~-~~~~~~a~~lae~l~~~~~--~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~ 147 (461)
T d1ohwa_ 71 HPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGSCSNENAFKTIFMWYRSKERG 147 (461)
T ss_dssp CHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhhhhhcccccccc-cchHHHHHHHHHHHHhhhc--cCcceeeeecchhhhhHHHHHHHHHHhhhcccC
Confidence 67888888776653100 0111111 1123466667776543211 2345899999999999999886420
Q ss_pred -------------------CCCCEEEEc----cCcee------------------------cCC----C-----------
Q 041151 153 -------------------GEGDGVVLL----FHTTW------------------------KRQ----Q----------- 170 (463)
Q Consensus 153 -------------------~~gd~Vlvp----~g~~~------------------------~~~----~----------- 170 (463)
.+...|+.- +|... +.. .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (461)
T d1ohwa_ 148 QSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQE 227 (461)
T ss_dssp TCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHH
T ss_pred cccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchh
Confidence 122345553 33211 000 0
Q ss_pred cccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCc-cCCCHHHHHHHHHHhhhCCeEEEecccccccccCCCCCccchH
Q 041151 171 IGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTG-QCLSEANLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSK 249 (463)
Q Consensus 171 ~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG-~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~ 249 (463)
...+. +.+++.+........++-+|++.--....| ...+.+-+++|.++|++||+++|.||++..+.-. +. ....
T Consensus 228 ~~~~~-~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRt-G~-~~~~- 303 (461)
T d1ohwa_ 228 EARCL-EEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST-GK-FWAH- 303 (461)
T ss_dssp HHHHH-HHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTT-SS-SSGG-
T ss_pred hhhhH-HHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccc-cc-cccc-
Confidence 01123 556666654433334677777764444445 4567888999999999999999999999876321 11 1111
Q ss_pred HHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCChhHHHHHHhh-hhhcccCChHHHHHHHHhcCCCCCCC
Q 041151 250 KVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKI-ASIALSPNVPAQIFMGLMVNPLKPGD 328 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~ 328 (463)
..+++ ... ..| -+++|.+ + | |+... ...+ ...... ...+++.+++...++.+.|+
T Consensus 304 ---e~~gi--~~~-PDi--v~~gK~l-~--~---g~~~~---~~~~-~~~~~~~~~~T~~g~p~~~aaa~a~l~------ 359 (461)
T d1ohwa_ 304 ---EHWGL--DDP-ADV--MTFSKKM-M--T---GGFFH---KEEF-RPNAPYRIFNTWLGDPSKNLLLAEVIN------ 359 (461)
T ss_dssp ---GGGCC--SSC-CSE--EEECGGG-S--S---EEEEE---CGGG-SCSSTTSSCCSCSSCHHHHHHHHHHHH------
T ss_pred ---ccccc--ccC-chh--hhhhhcc-c--c---ccccc---cccc-ccccccccccccccccccchhhcccch------
Confidence 12211 100 112 3788987 3 3 44442 3322 111111 12467778888877777763
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CC-cccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHH
Q 041151 329 ISYEQFVRESKGILESLRRRARMMTDGFNSC----RN-VVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLL 403 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----pg-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 403 (463)
.+++ +++.++.++.-++|.+.|+++ |. +.-+...|- +.- ++++... ....+...+
T Consensus 360 -----~i~~-~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl-~~~--ie~~~~~-----------~~~~i~~~~ 419 (461)
T d1ohwa_ 360 -----IIKR-EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT-FCS--FDTPDES-----------IRNKLISIA 419 (461)
T ss_dssp -----HHHH-TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT-EEE--EECSSHH-----------HHHHHHHHH
T ss_pred -----hhhh-hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeE-EEE--EEcCCHH-----------HHHHHHHHH
Confidence 2221 234455555556666666543 32 222223333 333 4554431 222344567
Q ss_pred HhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHHHHHHHHH
Q 041151 404 EATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMESFKKFNDE 449 (463)
Q Consensus 404 ~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~l~~~l~~ 449 (463)
.++||++.+.. .+.|||... .++++++.++++|.+++++
T Consensus 420 ~~~Gll~~~~~-------~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 420 RNKGVMLGGCG-------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp HHTTEECEEET-------TTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHCCeEEeeCC-------CCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 77899997732 236999877 7899999999999999875
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=4.8e-12 Score=121.86 Aligned_cols=302 Identities=15% Similarity=0.125 Sum_probs=160.1
Q ss_pred CcHHHHHHHHHHhhhcCC-CCC--ccCC-C----CCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHh
Q 041151 81 FPADAIARAKHYLSLTSG-GLG--AYSD-S----RGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVI 151 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~-~~~--~Y~~-~----~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~ 151 (463)
+|+++++++.+.+.++.. ... ..+. . +-+.+.|+.|+++++ .+.+ .|++++|++.+...+.....
T Consensus 12 ~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~------~~~~~~v~~~~gs~t~~~~a~~~~~ 85 (360)
T d1bjna_ 12 LPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLN------VPSNYKVLFCHGGGRGQFAAVPLNI 85 (360)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhC------CCCCCEEEEECCchHHHHhhhhhcc
Confidence 399999999987765311 000 0111 0 113567777777776 4333 78888888776666555444
Q ss_pred cCCCCEEEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 152 RGEGDGVVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 152 ~~~gd~Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
..+++.+++. .|... .......+. +.+++.+.. +++++.++..+|-||...+..
T Consensus 86 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~v~v~~~~~~t~~~~~~~ 158 (360)
T d1bjna_ 86 LGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRA-VKPMREWQL------SDNAAYMHYCPNETIDGIAID 158 (360)
T ss_dssp CTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEE-ECCGGGCCC------CSSCSCEEECSEETTTTEECC
T ss_pred cccccccceecccchhhhhHHHHhhcCccceeeccccCCCcch-hhhhhhhcc------CCceeEEEecccccccCcccc
Confidence 3677777775 33322 112222333 444444443 788888888899999887643
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
. + .++.+++.+++|.+.+.... + ... +...+.+.|.+|.+ ++|+. .|.++. .
T Consensus 159 ~---i--~~~~~~~~v~vDa~~~~~~~----~-vd~-------------~~~dv~~~ss~k~~-~~~~~-~~~~~~---~ 210 (360)
T d1bjna_ 159 E---T--PDFGADVVVAADFSSTILSR----P-IDV-------------SRYGVIYAGAQKNI-GPAGL-TIVIVR---E 210 (360)
T ss_dssp C---C--CCCCTTCCEEEECTTTTTSS----C-CCG-------------GGCSEEEEETTTTT-SSTTC-EEEEEE---G
T ss_pred c---e--ecccccceeeeeeeccccce----e-eee-------------ccceeEEEEccccc-ccCCC-ceeEee---e
Confidence 2 2 35667899999988775322 1 121 12237889999999 55554 344332 2
Q ss_pred hhHHH------------HHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041151 293 PKTVD------------EIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR 360 (463)
Q Consensus 293 ~~~~~------------~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p 360 (463)
+...+ ...........+.......+..... ........+...+++.+...++...+....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (360)
T d1bjna_ 211 DLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFK--------WLKANGGVAEMDKINQQKAELLYGVIDNSD 282 (360)
T ss_dssp GGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH--------HHHHTTHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHHHHHhhhccc
Confidence 22111 1111111112222222222211110 000111122344444555555555555542
Q ss_pred CcccccCCc---eeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc
Q 041151 361 NVVCNFTEG---AMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED 435 (463)
Q Consensus 361 g~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~ 435 (463)
+..+..... ...+. +.+|++. +.+.+...|+++||.+..|...- + .+|+|+. .++||
T Consensus 283 ~~~~~~~~~~rs~~v~~--f~~~~~~-----------~~~~~~~~l~~~Gi~~~~G~~~~---g--~~Ris~~~~~t~ed 344 (360)
T d1bjna_ 283 FYRNDVAKRNRSRMNVP--FQLADSA-----------LDKLFLEESFAAGLHALKGHRVV---G--GMRASIYNAMPLEG 344 (360)
T ss_dssp SEECCBCGGGBCSSEEE--EEESSGG-----------GHHHHHHHHHHTTEECCBCCTTT---C--SEEEECCTTSCHHH
T ss_pred cccccCCcccccceEEE--EEcCCcc-----------cHHHHHHHHHHCCCEeecCCCcc---C--eEEEEecCCCCHHH
Confidence 322222211 11222 3444432 33344567889999998874221 1 3999998 78899
Q ss_pred HHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDE 449 (463)
Q Consensus 436 i~~~~~~l~~~l~~ 449 (463)
++++++.|+++.++
T Consensus 345 V~~li~~l~e~~~~ 358 (360)
T d1bjna_ 345 VKALTDFMVEFERR 358 (360)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888875543
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.33 E-value=3.3e-11 Score=117.09 Aligned_cols=175 Identities=10% Similarity=0.098 Sum_probs=112.9
Q ss_pred HHHHHHHhhhcCCCCCccCCCCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc----
Q 041151 86 IARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL---- 161 (463)
Q Consensus 86 ~~a~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp---- 161 (463)
++.+.+.+.+ +...+.++. ...+++.++++++ ...++.++++|.|+.+++.++--.+||+|++|
T Consensus 4 ~~~~~~~l~~--~~~~~~G~~--~~~fE~~~~~~~~--------~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~ 71 (374)
T d1o69a_ 4 LKYIEEVFKS--NYIAPLGEF--VNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLASSFTF 71 (374)
T ss_dssp HHHHHHHHHH--TTTSCTTHH--HHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred HHHHHHHHhc--CCcCCCCHH--HHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcch
Confidence 4566666666 122223332 4789999999875 35688888889999999999822789999998
Q ss_pred ---------cCcee----cC-CCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeE
Q 041151 162 ---------FHTTW----KR-QQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLV 227 (463)
Q Consensus 162 ---------~g~~~----~~-~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ 227 (463)
.|.++ .. +.+..+. +..+..... .+++++|++++. .|.... +++|.++|++++++
T Consensus 72 ~a~~~~~~~~g~~pv~~Di~~~~~~~~~-~~~~~~~~~----~~~~~aii~~~~---~G~~~d---~~~i~~~~~~~~i~ 140 (374)
T d1o69a_ 72 IASVAPICYLKAKPVFIDCDETYNIDVD-LLKLAIKEC----EKKPKALILTHL---YGNAAK---MDEIVEICKENDIV 140 (374)
T ss_dssp GGGTHHHHHTTCEEEEECBCTTSSBCHH-HHHHHHHHC----SSCCCEEEEECG---GGCCCC---HHHHHHHHHHTTCE
T ss_pred HhhHHHHhhccceeEecccccccccccc-cccccchhc----cccccccccccc---ccchhh---hHHHHHHhhccCcc
Confidence 66666 12 2223333 333222111 126889987754 344444 77788899999999
Q ss_pred EEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCC--cccCCCCCceeEEEEecCCChhHHHHHHhhh
Q 041151 228 LLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVS--KGYWGECGQRGGYFEMTNIPPKTVDEIYKIA 303 (463)
Q Consensus 228 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 303 (463)
||+|.+++....-.+....++ + .+.+.||. |.+ +..| .|.+++ .++++.+.++.+.
T Consensus 141 vIED~a~a~g~~~~~~~~G~~-----------g----d~~~fSf~~~K~l-~tge--GG~i~t--nn~~~~~~~~~~~ 198 (374)
T d1o69a_ 141 LIEDAAEALGSFYKNKALGTF-----------G----EFGVYSYNGNKII-TTSG--GGMLIG--KNKEKIEKARFYS 198 (374)
T ss_dssp EEEECTTCTTCEETTEETTSS-----------S----SEEEEECCTTSSS-CCSS--CEEEEE--SCHHHHHHHHHHT
T ss_pred hhhhhhhhhcceECCeecCCC-----------C----ceEEEeccCcccc-cccc--ceeehh--hhHHHHHhhcccc
Confidence 999999987532122221111 2 25667775 877 4333 688876 6888888887664
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.32 E-value=1.9e-11 Score=118.07 Aligned_cols=300 Identities=14% Similarity=0.109 Sum_probs=158.8
Q ss_pred CcHHHHHHHHHHhhhcCCCCCcc---CC-C----CCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHH-HHHHHHHh
Q 041151 81 FPADAIARAKHYLSLTSGGLGAY---SD-S----RGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGV-MQTLNCVI 151 (463)
Q Consensus 81 ~p~~~~~a~~~~~~~~~~~~~~Y---~~-~----~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al-~~~~~~l~ 151 (463)
+|+++++++.+.+.++.....+. +. . +-+.+.|+.|+++++ .+ +...|++++|++.+. ..+...+.
T Consensus 14 vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~----~~-~~~~i~~~~gs~t~~~ea~~~~l~ 88 (361)
T d2c0ra1 14 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLG----NP-TGYKVLFIQGGASTQFAMIPMNFL 88 (361)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTT----CC-SSEEEEEESSHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhC----CC-CCCEEEEECCCchHHHHHHHhccc
Confidence 39999999998776532111111 10 0 111345555555553 22 223788887776555 45555555
Q ss_pred cCCCCEEEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHH
Q 041151 152 RGEGDGVVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEA 212 (463)
Q Consensus 152 ~~~gd~Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~ 212 (463)
.+|+.+++- +|..+ .......+. +.+++.+.. .+... .+|.||.+.+
T Consensus 89 -~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~---v~~~tg~~~~-- 154 (361)
T d2c0ra1 89 -KEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTL-PKLQEIQLQ-------DNAAY---LHLTSNETIE-- 154 (361)
T ss_dssp -CTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSC-CCGGGCCCC-------TTEEE---EEEESEETTT--
T ss_pred -cCCCceEEEeechhhhhhhhhhhhcCceeeeeccccccccch-hhhhhhccc-------CcceE---EEEeccccee--
Confidence 788887764 44444 333344555 556554443 22222 3467888877
Q ss_pred HHHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCC
Q 041151 213 NLREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 292 (463)
Q Consensus 213 ~l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~ 292 (463)
+.++.++|+++|+++++|.+.+.... +..+ ++. .|.+.|.+|.+ +++|.-.+++. .
T Consensus 155 -~~~i~~~~~~~~al~~vDavss~g~~-----~id~-----------~~~--di~~~s~~k~~-~~~~~~~~~~~----~ 210 (361)
T d2c0ra1 155 -GAQFKAFPDTGSVPLIGDMSSDILSR-----PFDL-----------NQF--GLVYAGAQKNL-GPSGVTVVIVR----E 210 (361)
T ss_dssp -TEECSSCCCCTTSCEEEECTTTTTSS-----CCCG-----------GGC--SEEEEETTTTT-CCSSCEEEEEE----G
T ss_pred -cceEEEeeccCCceEEEEeecccccc-----cccc-----------ccc--eeEEEeccccc-ccccCcEEEEE----h
Confidence 45667789999999999999886322 2233 222 25667889998 77775333333 2
Q ss_pred hhHH------------HHHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 041151 293 PKTV------------DEIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCR 360 (463)
Q Consensus 293 ~~~~------------~~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~p 360 (463)
.... .............+......+...+. .............+.++++..+........
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (361)
T d2c0ra1 211 DLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLK--------WIEERGGLEGVQQANRKKASLIYDAIDQSG 282 (361)
T ss_dssp GGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH--------HHHHTTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHhhhCccccccccccccccccccccccccceeeehhhhHHH--------hhhhccchHHHHHHHHHHHHHhhhhhhhcc
Confidence 2211 11111122112222222222211110 001111122344445555555555555431
Q ss_pred Cc-ccccCC---ceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcC
Q 041151 361 NV-VCNFTE---GAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEE 434 (463)
Q Consensus 361 g~-~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e 434 (463)
.. ...... ....+. +.+|.+. +...+...|+++||.+..|... . + .+|||+. .+.|
T Consensus 283 ~~~~~~~~~~~rS~~~~~--~~~~~~~-----------~~~~~~~~L~~~GI~~~~G~~~--~-g--~~RIs~~~~~~~e 344 (361)
T d2c0ra1 283 GFYRGCVDVDSRSDMNIT--FRLASEE-----------LEKEFVKASEQEGFVGLKGHRS--V-G--GLRASIYNAVPYE 344 (361)
T ss_dssp TSSEESSCGGGBCSSEEE--EECSCHH-----------HHHHHHHHHHHTTEESCBCCTT--T-C--SEEEECCTTSCHH
T ss_pred cccccCCChhhccceEEE--EECCCcc-----------cHHHHHHHHHHCCCEEecCCCc--C-C--eEEEEecCCCCHH
Confidence 21 111111 122222 3444432 3344567789999999887532 1 2 3999999 6899
Q ss_pred cHHHHHHHHHHHHHH
Q 041151 435 DMPAIMESFKKFNDE 449 (463)
Q Consensus 435 ~i~~~~~~l~~~l~~ 449 (463)
|++++++.|+++.++
T Consensus 345 dv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 345 SCEALVQFMEHFKRS 359 (361)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998876654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.23 E-value=8.9e-11 Score=113.06 Aligned_cols=299 Identities=12% Similarity=0.085 Sum_probs=152.6
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC--------CCCCHHHHHHHHHHHHHhcCCCCCCC-cEEEcCCcHHHHHHHHHHHhc
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD--------SRGIPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQTLNCVIR 152 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~--------~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~ 152 (463)
|+++++++.+.+.++.....+... .+-+.+.|+.|+++++ ++.+ .|++++|++++...+......
T Consensus 15 p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~------~~~~~~i~~~~gt~~~~~~~~~~~~~ 88 (360)
T d1w23a_ 15 PKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ------IPNDYQILFLQGGASLQFTMLPMNLL 88 (360)
T ss_dssp CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT------CCTTEEEEEESSHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhC------CCCCCEEEEeCCcHHHHHHHHHhhhc
Confidence 999999999877653211111100 0012467788888886 5545 688888887777766655543
Q ss_pred CCCCEEEEc---------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHH
Q 041151 153 GEGDGVVLL---------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEAN 213 (463)
Q Consensus 153 ~~gd~Vlvp---------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~ 213 (463)
.+++.+++. .+... .......+. +.+++... .... ++-+|-||.+.+
T Consensus 89 ~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~---~~~~~~tg~~~~--- 154 (360)
T d1w23a_ 89 TKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSI-PDFSEFQL-------NEND---AYLHITSNNTIY--- 154 (360)
T ss_dssp CTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSC-CCGGGCCC-------CTTE---EEEEEESEETTT---
T ss_pred ccCcccceeeccchhhhhHHHHHHhhhcceeeccccccccch-hhhhhccc-------cccc---ceeEecCCcccc---
Confidence 677777775 22222 111122222 33322211 1222 233456788877
Q ss_pred HHHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCCCceeEEEEecCCCh
Q 041151 214 LREILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPP 293 (463)
Q Consensus 214 l~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~ 293 (463)
+.+|.++|+++|+++|+|.+.+.... ...+ ++++ +.+.|+||.+ +++|. .|+++. .+
T Consensus 155 ~~~i~~~~~~~g~l~ivDavqs~g~~-----~id~-----------~~~~--vd~~~~~~~k-~~~~~-~~~~~~---~~ 211 (360)
T d1w23a_ 155 GTQYQNFPEINHAPLIADMSSDILSR-----PLKV-----------NQFG--MIYAGAQKNL-GPSGV-TVVIVK---KD 211 (360)
T ss_dssp TEECSSCCCCCSSCEEEECTTTTTSS-----CCCG-----------GGCS--EEEEETTTTT-SCTTC-EEEEEE---HH
T ss_pred ceeeeeccccceeeEEeecccccccc-----cccc-----------cccc--ceEEeecccc-ccCCc-ceeeEe---ch
Confidence 56777899999999999999986433 2233 2222 5667888887 55553 444442 22
Q ss_pred hHHH------------HHHhhhhhcccCChHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041151 294 KTVD------------EIYKIASIALSPNVPAQIFMGLMVNPLKPGDISYEQFVRESKGILESLRRRARMMTDGFNSCRN 361 (463)
Q Consensus 294 ~~~~------------~l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~pg 361 (463)
...+ ...+.......+......+....+. .+... .......++.+.+.............
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (360)
T d1w23a_ 212 LLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLD-------WIKDL-GGAEAIAKQNEEKAKIIYDTIDESNG 283 (360)
T ss_dssp HHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHH-------HHHHT-THHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHH-------HHhhh-hhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 2111 1111111122222222222221110 00000 00112223333333333333333222
Q ss_pred ccccc--C--CceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCc
Q 041151 362 VVCNF--T--EGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEED 435 (463)
Q Consensus 362 ~~~~~--~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~ 435 (463)
..... + .....+. +..|.+. ++.++ ...|.++||.++.|.... + .+|+|+- .+.|+
T Consensus 284 ~~~~~~~~~~rS~~vvs--f~i~~~~----------~~~~~-~~~l~~~GI~~~~G~~~~---g--giRiS~~~~~t~e~ 345 (360)
T d1w23a_ 284 FYVGHAEKGSRSLMNVT--FNLRNEE----------LNQQF-LAKAKEQGFVGLNGHRSV---G--GCRASIYNAVPIDA 345 (360)
T ss_dssp SSEESSCGGGBCSSEEE--EECSSHH----------HHHHH-HHHHHHTTEESCBCCTTT---C--SEEEECCTTSCHHH
T ss_pred ccccCCChhhcceeEEE--EEcCCCc----------cHHHH-HHHHHHCCCeeeeCCCcc---C--cEEEEeeCCCCHHH
Confidence 22111 1 1111222 3444432 13344 466888999998876432 1 3999987 48899
Q ss_pred HHHHHHHHHHHHHH
Q 041151 436 MPAIMESFKKFNDE 449 (463)
Q Consensus 436 i~~~~~~l~~~l~~ 449 (463)
++++++.|+++.++
T Consensus 346 V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 346 CIALRELMIQFKEN 359 (360)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99988888877653
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=98.67 E-value=4.9e-07 Score=87.85 Aligned_cols=284 Identities=13% Similarity=0.088 Sum_probs=158.0
Q ss_pred CccCC--CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHhcCCCCEEEEc-----------------
Q 041151 101 GAYSD--SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVVLL----------------- 161 (463)
Q Consensus 101 ~~Y~~--~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlvp----------------- 161 (463)
+.|.| .+|..++--.+..++.+.-|.+ .-+.-...|++.....++.+.-......++++
T Consensus 96 tPyqpE~sQG~Lq~l~e~q~~l~eltGmd--~~n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~ 173 (437)
T d1wyua1 96 TPYQPEVSQGVLQATFEYQTMIAELAGLE--IANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEA 173 (437)
T ss_dssp SCCSGGGCHHHHHHHHHHHHHHHHHHTSS--EECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhhCCC--ccccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhccc
Confidence 44544 5666666666777777665643 22444556776666655544432345677776
Q ss_pred cCcee---cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHHHHHHHHhhhCCeEEEecccccccc
Q 041151 162 FHTTW---KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILRFCYQENLVLLGDEVYQQNI 238 (463)
Q Consensus 162 ~g~~~---~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l~~l~~~a~~~~~~vi~Deay~~~~ 238 (463)
.|.++ +.+..+.+. +++ .+ ++.+|++++||. .|.+- +++++.+++++.|.+++.|-.-..
T Consensus 174 ~g~~vv~v~~~~~~~~~-~~~----~~------~~Aavmi~~Pnt-~G~~e---d~~~i~~~~h~~G~l~~~~ad~~a-- 236 (437)
T d1wyua1 174 VGAKLLTLPLEGGRTPL-PEV----GE------EVGAVVVQNPNF-LGALE---DLGPFAEAAHGAGALFVAVADPLS-- 236 (437)
T ss_dssp TTCEEEEECCBTTBCCC-CCC----CT------TEEEEEEESSCT-TSBCC---CHHHHHHHHHHTTCEEEEECCTTG--
T ss_pred ceeeEEeeecccccchh-hhh----cc------ceeEEEEccccc-ccccc---chHHHHHHhhhccceEEeeechhh--
Confidence 55555 333344444 332 22 799999999976 68873 478888899999998776633221
Q ss_pred cCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC---CceeEEEEecCCChhHHHHH----------------
Q 041151 239 YQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC---GQRGGYFEMTNIPPKTVDEI---------------- 299 (463)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~---G~R~G~~~~~~~~~~~~~~l---------------- 299 (463)
.. . ..+...+ +.+ |++++ +|.|+... |=-.|++.+ .+++...+
T Consensus 237 l~-~--l~~Pg~~--------GaD---i~~g~-~q~fg~p~g~GGP~~G~~a~---~~~l~r~lPgrivg~s~d~~G~~~ 298 (437)
T d1wyua1 237 LG-V--LKPPGAY--------GAD---IAVGD-GQSLGLPMGFGGPHFGFLAT---KKAFVRQLPGRLVSETVDVEGRRG 298 (437)
T ss_dssp GG-T--BCCHHHH--------TCS---EEEEE-CTTTTCCCGGGCSCCEEEEE---CGGGGGGCCSCCEEEEEBTTSCEE
T ss_pred hh-c--ccccccc--------ccc---eEeec-cceeccccCCCcCccccccc---cchhhccccccccccccccCCccc
Confidence 21 1 1122222 222 56666 66652111 122577775 44444322
Q ss_pred ------------Hhhhh-hcccCChHHHHH-HHHhcCCCCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCccc
Q 041151 300 ------------YKIAS-IALSPNVPAQIF-MGLMVNPLKPGDISYEQFVRE-SKGILESLRRRARMMTDGFNSCRNVVC 364 (463)
Q Consensus 300 ------------~~~~~-~~~~~~~~~q~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~pg~~~ 364 (463)
++.+. ..++.+...... +..++. .+-.+ ++++.+.-..+.+++.+.|.+++|+..
T Consensus 299 ~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~----------~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~ 368 (437)
T d1wyua1 299 FILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLA----------ALGPEGLREVALKSVEMAHKLHALLLEVPGVRP 368 (437)
T ss_dssp EEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEE
T ss_pred ceeecccccccccccccccchhhHHHHHHHHHHHHhh----------hcCcccHHHHHHHHHHHHHHHHHHhhhcCCeec
Confidence 11111 122333222222 111110 11122 566777888889999999999888876
Q ss_pred ccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEEec--CCcCcHHHHHHH
Q 041151 365 NFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTTIL--PAEEDMPAIMES 442 (463)
Q Consensus 365 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis~~--~~~e~i~~~~~~ 442 (463)
..+ +.+|--+.++.+. +..+ +.+.|.++||... -..|.. ..++.+.+++. .+.++|++++++
T Consensus 369 ~~~-~~~f~ef~v~~~~------------~~~~-i~k~L~d~G~~~~-~~~~~~-~~~~~lli~~TE~~tkeeiD~~v~a 432 (437)
T d1wyua1 369 FTP-KPFFNEFALALPK------------DPEA-VRRALAERGFHGA-TPVPRE-YGENLALFAATELHEEEDLLALREA 432 (437)
T ss_dssp CSC-SSBCSEEEEECSS------------CHHH-HHHHHHHTTCCCC-EECCTT-SCSSEEEEECCTTCCHHHHHHHHHH
T ss_pred cCC-CCeeeEEEEECCC------------CHHH-HHHHHHhCCCCCC-cccccC-CCCCeEEEecCCCCCHHHHHHHHHH
Confidence 544 3343222233332 1333 4566778898531 111221 13357899998 788999999999
Q ss_pred HHHHH
Q 041151 443 FKKFN 447 (463)
Q Consensus 443 l~~~l 447 (463)
|++++
T Consensus 433 l~eil 437 (437)
T d1wyua1 433 LKEVL 437 (437)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 98763
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=6.7e-06 Score=80.61 Aligned_cols=318 Identities=16% Similarity=0.110 Sum_probs=172.8
Q ss_pred cHHHHHHHHHHhhhcCCCCCccCC---CCCCHHHHHHHHHHHHHhcCCCCCCCcEEEcCCcHHHHHHHHHHHh--cCCC-
Q 041151 82 PADAIARAKHYLSLTSGGLGAYSD---SRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVI--RGEG- 155 (463)
Q Consensus 82 p~~~~~a~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~--~~~g- 155 (463)
++.+.+.+.+.+ ..++.|-| ++|..+.-=+...++.+.-|.++ -|.-...|++.+...++.+.. +..+
T Consensus 78 ~P~v~~~~~~~~----TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdv--aNaS~yDGatA~aeA~~ma~r~~~~~~~ 151 (471)
T d1wyub1 78 NPKLHEEAARLF----ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDRGE 151 (471)
T ss_dssp CCHHHHHHHHTT----SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcchhhhHHHHH----hccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc--cccccchHHHHHHHHHHHHHHHhhhccc
Confidence 566777665422 24456665 45554444444444444445432 334445666655444444331 1122
Q ss_pred ----CEEEEc-------------cCcee----cCCCcccChHHHHHHHHHHHHhcCCceeEEEEECCCCCCccCCCHHHH
Q 041151 156 ----DGVVLL-------------FHTTW----KRQQIGVLIINDLQQSVAQARSKGITVRAMVIINPGNPTGQCLSEANL 214 (463)
Q Consensus 156 ----d~Vlvp-------------~g~~~----~~~~~~~d~~~~l~~~l~~~~~~~~~~~~i~l~~p~NPtG~~~s~~~l 214 (463)
..+.++ .+..+ .......|. +.+.....+ ++.++++.+|++. |.+-. +.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~a~v~v~~p~~~-g~~e~--~~ 221 (471)
T d1wyub1 152 GRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDL-EALKRELGP------HVAALMLTNPNTL-GLFER--RI 221 (471)
T ss_dssp TTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCH-HHHHHHCST------TEEEEEECSSCTT-SCCCT--TH
T ss_pred ccccccccCCcccccceeeeeecccceeecccccccccccc-hhhhhhhhc------cccceeeccCCCc-ccccc--hh
Confidence 223332 22222 334566677 777776665 7889999999987 44432 35
Q ss_pred HHHHHHhhhCCeEEEecccccccccCCCCCccchHHHHHhcCCCCCCCceEEEEecCCcccCCCC----CceeEEEEecC
Q 041151 215 REILRFCYQENLVLLGDEVYQQNIYQDERPFVSSKKVLMDMGLPFSKEVQLVSFHTVSKGYWGEC----GQRGGYFEMTN 290 (463)
Q Consensus 215 ~~l~~~a~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~----G~R~G~~~~~~ 290 (463)
+.+.+++++.+..+++|-+...... .-. +.. ++ .. .+++.+.++.| |.| |--+|++.+
T Consensus 222 ~~~~~~~h~~g~~~~~~~~~~~~~~-~l~---~p~----~~----g~---div~vg~~q~~-G~P~~~GGP~~G~~a~-- 283 (471)
T d1wyub1 222 LEISRLCKEAGVQLYYDGANLNAIM-GWA---RPG----DM----GF---DVVHLNLHKTF-TVPHGGGGPGSGPVGV-- 283 (471)
T ss_dssp HHHHHHHHHHTCEEEEEGGGGGGTT-TTC---CHH----HH----TC---SEEECCTTTTT-CCCCTTSCCCCCCEEE--
T ss_pred hhhHHHHHhccccccccccchhhhh-hcc---ccC----cc----cc---ccccccccccc-ccccccccccccceee--
Confidence 6677777788877777655443322 111 111 11 12 14556666665 432 334788885
Q ss_pred CChhHHHHHH----------------hhh---hhcccCCh-HHHHHHHHhcCCCCCCCchHHHHH--HHHHHHHHHHHHH
Q 041151 291 IPPKTVDEIY----------------KIA---SIALSPNV-PAQIFMGLMVNPLKPGDISYEQFV--RESKGILESLRRR 348 (463)
Q Consensus 291 ~~~~~~~~l~----------------~~~---~~~~~~~~-~~q~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 348 (463)
.+++...+- +-+ ....+++. +...++..++ .++ +-++++.+...++
T Consensus 284 -~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYl-----------sllG~~GL~elA~~~~~~ 351 (471)
T d1wyub1 284 -KAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYI-----------RTLGLEGLKKAAALAVLN 351 (471)
T ss_dssp -CGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHH-----------HHhCchhHHHHHHHHHHH
Confidence 666655431 000 00112232 2122222222 121 2267788888899
Q ss_pred HHHHHHHhhcCCCcccccCCceeEEeeeccCChhhHHHHhhcCCCChHHHHHHHHHhcCeEeeCCCCCCCCCCCcEEEEE
Q 041151 349 ARMMTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRAGKVPDVFYCLRLLEATGISTVPGSGFGQKEGIFHLRTT 428 (463)
Q Consensus 349 ~~~l~~~L~~~pg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~lRis 428 (463)
..++.+.|+. +|+++.. .+.||--+-++.+.+. +..+.. +.|.++|+.- +...|.. ..++.+-|+
T Consensus 352 A~Yla~~L~~-~G~~~~~-~~~ff~EFvv~~~~~~----------~~~~i~-k~L~~~G~~~-~~~~~p~-~~~~~llv~ 416 (471)
T d1wyub1 352 ARYLKELLKE-KGYRVPY-DGPSMHEFVAQPPEGF----------RALDLA-KGLLELGFHP-PTVYFPL-IVKEALMVE 416 (471)
T ss_dssp HHHHHHHHHH-TTCBCSS-CSSCCSCEEEBCSTTC----------CHHHHH-HHHHHTTCCC-CEESCST-TSTTCEEEC
T ss_pred HHHHHHHHhh-cCceecc-CcceeeEEeecCCCCC----------CHHHHH-HHHHHcCCCC-CcccCcC-CCCCeEEEe
Confidence 9999999976 5888753 3444332224444331 233444 4455678843 3233332 234568899
Q ss_pred ec--CCcCcHHHHHHHHHHHHHHHHHHhccccCC
Q 041151 429 IL--PAEEDMPAIMESFKKFNDEFMEQYEDYRGY 460 (463)
Q Consensus 429 ~~--~~~e~i~~~~~~l~~~l~~~~~~~~~~~~~ 460 (463)
+. .+.+||+.+++.|++++++..+-.+++-|-
T Consensus 417 vTE~~tkedID~lv~aL~~i~~e~~~~~~~ap~~ 450 (471)
T d1wyub1 417 PTETEAKETLEAFAEAMGALLKKPKEWLENAPYS 450 (471)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTSCHHHHHTCCCS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhHHHHHhCCcC
Confidence 98 889999999999999999887767776653
|