Citrus Sinensis ID: 041182

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKCYKDVTSCDQYLTEVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEcccccEEEEcccccHHHHHHHccccEEEccccccccccccccccccccccccEEEEEEccccHHHHHHccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccccccEEEEEEcccEEEEcccccEHHHHHHHccccEEEcccccccccEEEEEccHHHHccccEEEEEEcccccHHHHccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHHcccc
Coil and Loop (DISEMBL)
mgnslrcclacvlpcgaldLIRIVHlngyveeitrpitageileanpnhvlskpcsqgvVRKIlilspeselkrgsiyflipasslpgekkkcgnnnknkafkkskkcykdvtSCDQYLTEVLSdkkssssrrrhhrsssrvvvwrphlesined
Flexible Loop (DISEMBL)
MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILspeselkrgsIYFLIpasslpgekkkcgnnnknkafkkskkcykdvtSCDQYLTEvlsdkkssssrrrhhrsssrvvvwrphlesined
Low Complexity Region (SEG)
MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILSPESELKRGSIYFLIPASSLPGEkkkcgnnnknkafkkskkcykDVTSCDQYLTEVLSDKKssssrrrhhrsssrVVVWRPHLESINED
Disordered region (IsUnstruct)
****LRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILSPESELKRGSIYFLIP*************************************************************************
Disordered Region (DISOPRED)
MG*****CL******GALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILSPESELKRGSIYFLIP******************************************************************LESIN**
Disordered Region (DISEMBL)
MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKCYKDVTSCDQYLTEV********************VVWRPHLESINED
Disordered Region (DISPRO)
**NSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILSPESELKRGSIYFLIPASSLP********************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKCYKDVTSCDQYLTEVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
224124708	156	predicted protein [Populus trichocarpa]	0.974	0.967	0.731	8e-56
449463312	154	PREDICTED: uncharacterized protein LOC10	0.967	0.974	0.679	3e-52
449509088	140	PREDICTED: uncharacterized protein LOC10	0.903	1.0	0.664	2e-50
225434433	148	PREDICTED: uncharacterized protein LOC10	0.948	0.993	0.743	7e-49
297822751	177	hypothetical protein ARALYDRAFT_481935 [	0.987	0.864	0.632	7e-49
147819591	148	hypothetical protein VITISV_020323 [Viti	0.948	0.993	0.737	8e-49
224145523	166	predicted protein [Populus trichocarpa]	0.974	0.909	0.701	1e-48
67906726	177	hypothetical protein At2g30230 [Arabidop	0.987	0.864	0.627	2e-48
15227725	177	uncharacterized protein [Arabidopsis tha	0.987	0.864	0.621	7e-48
351722424	165	uncharacterized protein LOC100306192 [Gl	0.980	0.921	0.660	8e-48

>gi|224124708|ref|XP_002319402.1| predicted protein [Populus trichocarpa] gi|222857778|gb|EEE95325.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 117/160 (73%), Positives = 131/160 (81%), Gaps = 9/160 (5%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEIT PITA E+L+ANPNHVLSKP SQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITGPITAAEVLKANPNHVLSKPSSQGVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKCY-----KDVTSC 115
           RKILILSPESELKRGSIYFLIP+SSLPG+KKK GNN  ++    SKK       KD   C
Sbjct: 61  RKILILSPESELKRGSIYFLIPSSSLPGDKKKSGNNCGHQMKSSSKKSKRYCNNKDARDC 120

Query: 116 DQYLTEVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED 155
           D+YLT+++S+KKSS    R  R + RV VWRPHL+SI+ED
Sbjct: 121 DRYLTDIVSEKKSS----RRDRRTGRVGVWRPHLQSISED 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463312|ref|XP_004149378.1| PREDICTED: uncharacterized protein LOC101207122 [Cucumis sativus]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 122/159 (76%), Gaps = 9/159 (5%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNG+VEEI  PITAG++L+ANPNHVLSKP SQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGDVLKANPNHVLSKPSSQGVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKC----YKDVTSCD 116
           R+ILILSPESELKRGSIYFLIP++SLP EKK+          +K K C           D
Sbjct: 61  RRILILSPESELKRGSIYFLIPSTSLP-EKKRNAATTLKTPSRKVKNCTVAAVPTTADTD 119

Query: 117 QYLTEVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED 155
            YL++V+SDKK S    R  R  SRV+VWRPHLESI+ED
Sbjct: 120 SYLSDVVSDKKPS----RRERRGSRVIVWRPHLESISED 154

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509088|ref|XP_004163489.1| PREDICTED: uncharacterized protein LOC101226826 [Cucumis sativus]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/155 (66%), Positives = 118/155 (76%), Gaps = 15/155 (9%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNG+VEEI  PITAG++L+ANPNHVLSKP SQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGDVLKANPNHVLSKPSSQGVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKCYKDVTSCDQYLT 120
           R+ILILSPESELKRGSIYFLIP++SLP +K+             +          D YL+
Sbjct: 61  RRILILSPESELKRGSIYFLIPSTSLPEKKRNA-----------TVAAVPTTADTDSYLS 109

Query: 121 EVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED 155
           +V+SDKK S    R  R  SRV+VWRPHLESI+ED
Sbjct: 110 DVVSDKKPS----RRERRGSRVIVWRPHLESISED 140

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434433|ref|XP_002272573.1| PREDICTED: uncharacterized protein LOC100260457 [Vitis vinifera]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 129/156 (82%), Gaps = 9/156 (5%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHL+GYVEEI RP+TAGEIL+A+PNHVLSKPCSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLSGYVEEIARPVTAGEILQAHPNHVLSKPCSQGVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKK-CGNNNKNKAFKKSKKCYKDVTSCDQYL 119
           RKILILSPESELKRGSIYFLIPA+SLP +K+   G+N K  + K S+KC  DV S     
Sbjct: 61  RKILILSPESELKRGSIYFLIPATSLPEKKRSGSGSNPKKSSKKSSRKCNTDVGS----- 115

Query: 120 TEVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED 155
           TE++S+KKSS   R   RSS RV VWRPHLESI ED
Sbjct: 116 TEMISEKKSSRRDR---RSSGRVGVWRPHLESILED 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822751|ref|XP_002879258.1| hypothetical protein ARALYDRAFT_481935 [Arabidopsis lyrata subsp. lyrata] gi|297325097|gb|EFH55517.1| hypothetical protein ARALYDRAFT_481935 [Arabidopsis lyrata subsp. lyrata]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 112/177 (63%), Positives = 130/177 (73%), Gaps = 24/177 (13%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNG+V+EITRP+TAGEIL+ANPNHVLSKPCSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITRPMTAGEILQANPNHVLSKPCSQGVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKCYKDVTS------ 114
           RKILILSPESELKRGSIYFLIP +SLP EKKK     + +  KK  +   D+ S      
Sbjct: 61  RKILILSPESELKRGSIYFLIPDTSLP-EKKKTKKRKEVRCRKKPLESGSDINSDHMSTN 119

Query: 115 ----------CDQYLTEVLSDKKSSSS------RRRHHRSSSRVVVWRPHLESINED 155
                     C++YL +V+  +K SS+      RR+H RS+S V  WRPHL+SI ED
Sbjct: 120 KDLDGHCLTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSAS-VSTWRPHLDSITED 175

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819591|emb|CAN59819.1| hypothetical protein VITISV_020323 [Vitis vinifera]

 Score =  197 bits (502), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/156 (73%), Positives = 128/156 (82%), Gaps = 9/156 (5%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHL+GYVEEI RP+TAGEIL+A+PNHVLSKPCSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLSGYVEEIARPVTAGEILQAHPNHVLSKPCSQGVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKK-CGNNNKNKAFKKSKKCYKDVTSCDQYL 119
           RKILILSPESELKRGSIYFLIPA+SLP +K+   G+N K  + K S+KC  DV S     
Sbjct: 61  RKILILSPESELKRGSIYFLIPATSLPEKKRSGSGSNPKKSSKKSSRKCNXDVGS----- 115

Query: 120 TEVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED 155
           TE++S+KKSS   R   R S RV VWRPHLESI ED
Sbjct: 116 TEMISEKKSSRRDR---RXSGRVGVWRPHLESILED 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145523|ref|XP_002325673.1| predicted protein [Populus trichocarpa] gi|222862548|gb|EEF00055.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 113/161 (70%), Positives = 129/161 (80%), Gaps = 10/161 (6%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIR+VHLNG+VEEIT PITA E+L+ANPNHVLSKP SQ VV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRVVHLNGHVEEITGPITAAEVLKANPNHVLSKPSSQSVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSK------KCYKDVTS 114
           RKILILSPESELKRGSIYFLIP+SSLPGEKKK GNN  +K+   SK         KDV  
Sbjct: 61  RKILILSPESELKRGSIYFLIPSSSLPGEKKKGGNNCSHKSKSSSKKSKKYCNINKDVQD 120

Query: 115 CDQYLTEVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED 155
           CD++L +++S+KK S       R +SRV VWRPHL+SI+ED
Sbjct: 121 CDRHLNDLVSEKKPSRRD----RRTSRVRVWRPHLQSISED 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|67906726|gb|AAY82796.1| hypothetical protein At2g30230 [Arabidopsis thaliana]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 130/177 (73%), Gaps = 24/177 (13%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNG+V+EIT P+TAGEIL+ANPNHVLSKPCSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQGVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKCYKDVTS------ 114
           RKILILSPESELKRGSIYFLIP +S+P EKKK     + +  KK  +   D+ S      
Sbjct: 61  RKILILSPESELKRGSIYFLIPDTSMP-EKKKTKKRKELRCRKKPLESGNDINSDHVSTN 119

Query: 115 ----------CDQYLTEVLSDKKSSSS------RRRHHRSSSRVVVWRPHLESINED 155
                     C++YL +V+  +K SS+      RR+H RS+S V  WRPHL+SINED
Sbjct: 120 KDLDGHCLTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSAS-VSTWRPHLDSINED 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227725|ref|NP_180582.1| uncharacterized protein [Arabidopsis thaliana] gi|2347189|gb|AAC16928.1| hypothetical protein [Arabidopsis thaliana] gi|20197101|gb|AAM14914.1| hypothetical protein [Arabidopsis thaliana] gi|52354285|gb|AAU44463.1| hypothetical protein AT2G30230 [Arabidopsis thaliana] gi|330253266|gb|AEC08360.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  195 bits (495), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 129/177 (72%), Gaps = 24/177 (13%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNG+V+EIT P+TAGEIL+ANPNHVLSKPCSQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQGVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNNKNKAFKKSKKCYKDVTS------ 114
           RKILILSPESELKRGSIYFLIP +S+P EKKK     + +  KK  +   D+ S      
Sbjct: 61  RKILILSPESELKRGSIYFLIPDTSMP-EKKKTKKRKELRCRKKPLESGNDINSDHVSTN 119

Query: 115 ----------CDQYLTEVLSDKKSSSS------RRRHHRSSSRVVVWRPHLESINED 155
                     C++YL +V+  +K SS+      RR+H RS+S V  WRPHL+SI ED
Sbjct: 120 KDLDGHCLTLCEKYLEDVMLSEKMSSAGKENRHRRKHSRSAS-VSTWRPHLDSITED 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722424|ref|NP_001235196.1| uncharacterized protein LOC100306192 [Glycine max] gi|255627825|gb|ACU14257.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 122/168 (72%), Gaps = 16/168 (9%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGE+L+ANPNHVLSKP SQGVV
Sbjct: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEVLKANPNHVLSKPSSQGVV 60

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKKCGNNN--------KNKAFKKSKKCYKDV 112
           R+ILILSPE+ELKRGSIYFLIP SSLP  K+  G  +        K  +  KS K   DV
Sbjct: 61  RRILILSPETELKRGSIYFLIPESSLPENKRHAGKGSIGGDSGIKKKASTMKSNKGSSDV 120

Query: 113 --TSCDQ-YL--TEVLSDKKSSSSRRRHHRSSSRVVVWRPHLESINED 155
             +S  Q YL  T   S +K SS R R      R+ +WRPHLESI ED
Sbjct: 121 DYSSLPQGYLKVTHKGSKEKRSSCRDRR---KGRIGIWRPHLESILED 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2060859	177	AT2G30230 "AT2G30230" [Arabido	0.561	0.491	0.908	3.3e-45
TAIR|locus:2007377	169	AT1G06980 "AT1G06980" [Arabido	1.0	0.917	0.604	1.2e-42
TAIR|locus:505006153	193	AT1G29195 "AT1G29195" [Arabido	0.541	0.435	0.569	3.3e-30
TAIR|locus:2014174	176	AT1G18290 "AT1G18290" [Arabido	0.554	0.488	0.215	0.00041
TAIR|locus:2170116	159	AT5G50090 "AT5G50090" [Arabido	0.432	0.421	0.317	0.00075

TAIR|locus:2060859 AT2G30230 "AT2G30230" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 79/87 (90%), Positives = 85/87 (97%)

Query:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
             MGNSLRCCLACVLPCGALDLIRIVHLNG+V+EIT P+TAGEIL+ANPNHVLSKPCSQGVV
Sbjct:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGHVDEITSPMTAGEILQANPNHVLSKPCSQGVV 60

Query:    61 RKILILSPESELKRGSIYFLIPASSLP 87
             RKILILSPESELKRGSIYFLIP +S+P
Sbjct:    61 RKILILSPESELKRGSIYFLIPDTSMP 87

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2007377 AT1G06980 "AT1G06980" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 101/167 (60%), Positives = 108/167 (64%)

Query:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
             MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITR ITAGEIL+ANPNHVLSKPCSQGVV
Sbjct:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRSITAGEILQANPNHVLSKPCSQGVV 60

Query:    61 RKILILSPESELKRGSIYFLIPASSLPGEXXXXXXXXXX-------XXXXXXXXXXXD-- 111
             RKILILSPESELKRGSIYFLIP SSLP +                            D  
Sbjct:    61 RKILILSPESELKRGSIYFLIPDSSLPEKKRRRKDTPRRKKNLQNPSADAAGREIKGDEE 120

Query:   112 -VTSCDQYLTEVLSDKKXXXXXXXXX--XXXXXVVVWRPHLESINED 155
              V  C++YL EV+S                   V  WRP L+SI+ED
Sbjct:   121 CVKLCEKYLEEVVSSASTGKEHRHRRRHSRSASVSTWRPLLDSISED 167

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006153 AT1G29195 "AT1G29195" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 53/93 (56%), Positives = 71/93 (76%)

Query:     1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCS---- 56
             M  ++RCC+AC+LPCGALD+IRIVH NG+VEEI+  ITA EI++A+P HVL KP S    
Sbjct:     1 MKETIRCCIACILPCGALDVIRIVHSNGHVEEISGTITASEIMKAHPKHVLKKPSSPTSD 60

Query:    57 ---QGVVR--KILILSPESELKRGSIYFLIPAS 84
                + V+   KI+I+ PE+EL+RG IYFL+PA+
Sbjct:    61 HDERDVISATKIVIVPPEAELQRGKIYFLMPAT 93

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2014174 AT1G18290 "AT1G18290" [Arabidopsis thaliana (taxid:3702)]

 Score = 82 (33.9 bits), Expect = 0.00041, Sum P(2) = 0.00041
 Identities = 19/88 (21%), Positives = 42/88 (47%)

Query:     1 MGNSLRCCLACVLPCGALDLIRIVH-LNGYVEEITRPITAGEILEANPNHVLSKPCSQGV 59
             MGN+  C    +    +  +++I+    G +E  ++PI   +I+  +  H ++      +
Sbjct:     1 MGNTSSCAPLIISTNSSSGVVKILAPFTGTLEVFSKPIKTSDIVSRHSGHFITDSTLLQI 60

Query:    60 VRKILILSPESELK-RGSIYFLIPASSL 86
               ++  +SP+  L+ R  +Y L+P   L
Sbjct:    61 SHRVTAVSPDEYLRPRRHLYLLLPTDML 88

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2170116 AT5G50090 "AT5G50090" [Arabidopsis thaliana (taxid:3702)]

 Score = 80 (33.2 bits), Expect = 0.00075, Sum P(2) = 0.00075
 Identities = 26/82 (31%), Positives = 41/82 (50%)

Query:    15 CGALDLIRIV--HLNGYVEEITRPITAGEILEANPNHVLSKPCSQ-----------GVVR 61
             C A+D  R+V  H NG  E+++ P++A  +++ NP H +S   S            G +R
Sbjct:     4 CQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHGGPLR 63

Query:    62 --KILILSPESELKRGSIYFLI 81
               +I +L P   L  G +Y LI
Sbjct:    64 LTRIKLLRPTDTLVLGHVYRLI 85

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
pfam14009	181	pfam14009, DUF4228, Domain of unknown function (DU	9e-47

>gnl|CDD|222492 pfam14009, DUF4228, Domain of unknown function (DUF4228)

 Score =  149 bits (379), Expect = 9e-47
 Identities = 56/184 (30%), Positives = 78/184 (42%), Gaps = 33/184 (17%)

Query: 1   MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVV 60
           MGN L CCLA   P GA   +++VH +G V E +RP+TA E++   P H +    S  + 
Sbjct: 1   MGNCLSCCLA---PSGAAATVKVVHPDGKVREYSRPVTAAELMLEYPGHFVCDSDSLYIG 57

Query: 61  RKILILSPESELKRGSIYFLIPASSLPGEKKKCGN----------NNKNKAFKKSKKCYK 110
           R+I  L P+ EL+RG +YFL+PA  L                        A + S     
Sbjct: 58  RRIPALPPDDELERGQLYFLLPAERLQSVLAAKDMASLASSASSALKSASAKRSSSSRPS 117

Query: 111 DVTSCD------------QYLTEVLSDKKSSS--------SRRRHHRSSSRVVVWRPHLE 150
            V   D            + L E+L +   S+           R     SR   WRP LE
Sbjct: 118 PVRKSDGGVVRVKVVVSKEELEELLEEGSVSASLSELCETPELRKRSRGSRSRSWRPKLE 177

Query: 151 SINE 154
           +I+E
Sbjct: 178 TISE 181

This domain is found in plants. The function is not known. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
PF14009	181	DUF4228: Domain of unknown function (DUF4228)	100.0

>PF14009 DUF4228: Domain of unknown function (DUF4228)

Probab=100.00  E-value=9.1e-38  Score=239.27  Aligned_cols=151  Identities=37%  Similarity=0.618  Sum_probs=112.5

Q ss_pred             CCCcccccccccCCCCCCceeEEEccCCcEEEecCCCCHHHHhhhCCCeEEECCCCCCCccccccCCCCCccCCCCeEEE
Q 041182            1 MGNSLRCCLACVLPCGALDLIRIVHLNGYVEEITRPITAGEILEANPNHVLSKPCSQGVVRKILILSPESELKRGSIYFL   80 (155)
Q Consensus         1 MGN~lscc~~c~~~c~a~~~~kVV~~dG~Vee~~~PV~AaeVm~~~P~H~V~~s~sl~~~~ri~~L~pDeeL~~G~iYfL   80 (155)
                      |||+++||.+   +++..++|||||+||+|++|+.||+|+|||.+||+||||+++.+.++.++.+|+||++|++|++|||
T Consensus         1 MGn~~~~~~~---~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h~v~~~~~~~~~~~~~~l~~d~~L~~G~~Y~l   77 (181)
T PF14009_consen    1 MGNCVSCCLA---SSSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGHFVCDSDSFRFGRRIKPLPPDEELQPGQIYFL   77 (181)
T ss_pred             CCCccccccc---ccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCCEEeccccccCCCcccCCCccCeecCCCEEEE
Confidence            9999999886   4566889999999999999999999999999999999999998889999999999999999999999


Q ss_pred             eeCCCCCcccccccCC------CCC-cc--ccc-c-------ccccC-----CcccchhhHHHHhhhcccC--------c
Q 041182           81 IPASSLPGEKKKCGNN------NKN-KA--FKK-S-------KKCYK-----DVTSCDQYLTEVLSDKKSS--------S  130 (155)
Q Consensus        81 LP~~~l~~~~~~~~~~------~~~-~~--~~~-~-------~~~~~-----~~~~~~~~~~~~~~~~~~~--------~  130 (155)
                      ||.+.++.......-.      +.. ..  ... .       .....     .+....+.+.+++++....        .
T Consensus        78 lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~rvki~isk~el~~~l~~~s~~~~~~~~~~~  157 (181)
T PF14009_consen   78 LPMSRLQSVLSASDMASLASSASSASSSSSARKSSSRPFSRSRSSNGGVVRVKIVISKEELEELLSEGSDEEMLSESCRR  157 (181)
T ss_pred             EEccccCcccccchhcccccchhhccccccccccccccccccccccCcccccccccCHHHHHHHHhccccchhhhhhhcc
Confidence            9999988753322111      000 00  000 0       01111     1234567788888644211        0


Q ss_pred             cccccccCCCCceecccccccccC
Q 041182          131 SRRRHHRSSSRVVVWRPHLESINE  154 (155)
Q Consensus       131 ~~~~r~~~~~~~~~w~p~l~~i~e  154 (155)
                      ...+.+++.++...|||.||+|.|
T Consensus       158 ~~~~~~~~~~~~~~WrP~LesI~E  181 (181)
T PF14009_consen  158 PRRRSSRRGSRSRSWRPALESIPE  181 (181)
T ss_pred             ccccccccCCCCCCccCCCCCcCc
Confidence            122345667888899999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d1tkea1	62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	84.18
d1nyra2	59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	80.03

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=84.18  E-value=0.42  Score=29.43  Aligned_cols=25  Identities=8%  Similarity=0.062  Sum_probs=22.7

Q ss_pred             eEEEccCCcEEEecCCCCHHHHhhh
Q 041182           21 IRIVHLNGYVEEITRPITAGEILEA   45 (155)
Q Consensus        21 ~kVV~~dG~Vee~~~PV~AaeVm~~   45 (155)
                      ++|..|||.+.+|...+|+.||-..
T Consensus         2 ~~ItlPDG~~~~~~~g~T~~diA~~   26 (62)
T d1tkea1           2 PVITLPDGSQRHYDHAVSPMDVALD   26 (62)
T ss_dssp             CEEECTTSCEEECSSCBCHHHHHHH
T ss_pred             CEEECCCCCEEEcCCCCCHHHHHHH
Confidence            5788899999999999999999776

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.03  E-value=0.16  Score=31.33  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=22.6

Q ss_pred             eEEEccCCcEEEecCCCCHHHHhhhC
Q 041182           21 IRIVHLNGYVEEITRPITAGEILEAN   46 (155)
Q Consensus        21 ~kVV~~dG~Vee~~~PV~AaeVm~~~   46 (155)
                      ++|..|||.+.+|..++|+.||-..-
T Consensus         1 I~ItlPDG~~~~~~~g~T~~diA~~I   26 (59)
T d1nyra2           1 INIQFPDGNKKAFDKGTTTEDIAQSI   26 (59)
T ss_dssp             CBBCCTTSCCCBCCTTCCHHHHHHTT
T ss_pred             CEEECCCCCEEEcCCCCCHHHHHHHH
Confidence            46778999999999999999997653