Citrus Sinensis ID: 041243

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400------
MDKKNENGEESVNKDGSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLLHK
cccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccEEEEccccEEEcccccEEEEEEEEEcccccEEccccccccccccccccccEEEccccccccccccccEEEEEEEcccccHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccEEEEEEEEEcccccEEccccccccEEEEEEcccHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccc
cccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccEEEEEEEcccHHHcccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEHHHcccccEcccccccHHHHccccccHHHHHHHHHHHHcccEEEEEcEEcccccccEEEEEEEEEEccccEEccEccccccccccccEEEEEcccccccccEEcccEEEEEEEEcccccHHHHHHHHHHccEEEEccccccccccccHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccEEEEccEEEEcccccEEccccccccEEEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHHccccccccEEEcccccc
mdkknengeesvnkdgsicgydsLHTLLSANLKPHIYQEVSRLLhglncgkpLELVALSANgkalssehdfdlqgfcfradkeflreprvVRVGLIQnsivlpttlhFLDQKKAIFQKLKLLIDAAGVSGVNILCLqeawtmpfafctrekrwcefaepvdgeSTQFLQELARKYNMVIIspilerdvnhgdtiWNTAIIIgnhgniigkhrknhiprvgdfnestyymegntghpvfetAFGKIAVnicygrhhplnwlafglngaeivfnpsatvgelsepmwpieaRNAAIANSYFVGsinrvgtevfpnpftsgdgkpqhkdfghfygsshfsapdgsctpslsrfrdgllisdMDLNLCRQLKDKWGFRMTARYELYAEMLANyskadyepqvisdpllhk
mdkknengeesvnkdgsicGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSkadyepqvisdpllhk
MDKKNENGEESVNKDGSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAiiignhgniigKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLLHK
****************SICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPF***********FGHFYG*************SLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADY************
***********************LHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALS********EHDFDLQGF*************VVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVI*D*****
*************KDGSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLLHK
****************SICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISD*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDKKNENGEESVNKDGSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLLHK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query406 2.2.26 [Sep-21-2011]
Q964D8391 Beta-ureidopropionase OS= yes no 0.945 0.982 0.629 1e-144
Q9UBR1384 Beta-ureidopropionase OS= yes no 0.928 0.981 0.590 1e-135
Q5RBM6384 Beta-ureidopropionase OS= yes no 0.928 0.981 0.587 1e-134
Q03248393 Beta-ureidopropionase OS= yes no 0.935 0.966 0.572 1e-130
Q8VC97393 Beta-ureidopropionase OS= yes no 0.935 0.966 0.569 1e-129
Q9XGI9300 N-carbamoylputrescine ami N/A no 0.679 0.92 0.284 3e-22
Q3HVN1300 N-carbamoylputrescine ami N/A no 0.679 0.92 0.284 6e-22
Q8VYF5326 N-carbamoylputrescine ami no no 0.620 0.773 0.295 7e-22
Q93XI4301 N-carbamoylputrescine ami no no 0.620 0.837 0.281 2e-18
Q28IE5276 Omega-amidase NIT2 OS=Xen no no 0.583 0.858 0.260 9e-14
>sp|Q964D8|BUP1_DICDI Beta-ureidopropionase OS=Dictyostelium discoideum GN=pyd3 PE=1 SV=1 Back     alignment and function desciption
 Score =  512 bits (1319), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/386 (62%), Positives = 297/386 (76%), Gaps = 2/386 (0%)

Query: 21  YDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRA 80
           ++S+   L   +      EV R+L+G N G  ++ + +      L+++++F++      A
Sbjct: 5   FESVQATLEKYIPAEELSEVKRILYGYNRGHHVKSLPICQEALDLANKNNFEIVASKVEA 64

Query: 81  DKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAW 140
           D E LR+PR+VR+G+IQNSI   TT    DQ  AI  K++ +IDAAG  GVN+LCLQE W
Sbjct: 65  DPEQLRKPRIVRLGIIQNSIGAETTAPIQDQYLAIEAKIEKMIDAAGAMGVNVLCLQETW 124

Query: 141 TMPFAFCTREKR-WCEFAEPVD-GESTQFLQELARKYNMVIISPILERDVNHGDTIWNTA 198
            MPFAFCTREK  W EFAE    G+S +F+Q +ARKYNMVIISP+LERD  H  TI NTA
Sbjct: 125 HMPFAFCTREKYPWVEFAESASTGQSIKFIQRMARKYNMVIISPMLERDDVHASTIHNTA 184

Query: 199 IIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLN 258
           +++GN+GNIIGK RKNHIPR GDFNESTYYME   GHPVFET +GKIA+NICYGRHH LN
Sbjct: 185 VVVGNNGNIIGKSRKNHIPRTGDFNESTYYMESTLGHPVFETIYGKIAINICYGRHHNLN 244

Query: 259 WLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSG 318
           WLA+GLNGAEIVFNPSATVGELSEPMW +EARNAA+ N+YFVGSINRVGTE FPN FTSG
Sbjct: 245 WLAYGLNGAEIVFNPSATVGELSEPMWGVEARNAAMTNNYFVGSINRVGTEHFPNEFTSG 304

Query: 319 DGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTAR 378
           +GKP HKDFGHFYGSS+FS+PD  CTPSLSR  DGL IS++DLNLC+Q+KDKW F+MTAR
Sbjct: 305 NGKPAHKDFGHFYGSSYFSSPDNCCTPSLSRVSDGLNISEVDLNLCQQVKDKWNFQMTAR 364

Query: 379 YELYAEMLANYSKADYEPQVISDPLL 404
           YELYA+ L +Y   +Y+P +I DP +
Sbjct: 365 YELYAKFLTDYINPNYQPNIIKDPSM 390
Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.
Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 6
>sp|Q9UBR1|BUP1_HUMAN Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RBM6|BUP1_PONAB Beta-ureidopropionase OS=Pongo abelii GN=UPB1 PE=2 SV=1 Back     alignment and function description
>sp|Q03248|BUP1_RAT Beta-ureidopropionase OS=Rattus norvegicus GN=Upb1 PE=1 SV=1 Back     alignment and function description
>sp|Q8VC97|BUP1_MOUSE Beta-ureidopropionase OS=Mus musculus GN=Upb1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XGI9|AGUB_SOLLC N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|Q3HVN1|AGUB_SOLTU N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|Q8VYF5|AGUB_ARATH N-carbamoylputrescine amidase OS=Arabidopsis thaliana GN=CPA PE=1 SV=1 Back     alignment and function description
>sp|Q93XI4|AGUB_ORYSJ N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|Q28IE5|NIT2_XENTR Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
449438222422 PREDICTED: beta-ureidopropionase-like [C 0.992 0.954 0.836 0.0
255584039415 Beta-ureidopropionase, putative [Ricinus 1.0 0.978 0.832 0.0
224095800417 predicted protein [Populus trichocarpa] 0.992 0.966 0.876 0.0
356521231408 PREDICTED: beta-ureidopropionase-like [G 0.995 0.990 0.814 0.0
357476203411 Beta-ureidopropionase [Medicago truncatu 0.995 0.982 0.803 0.0
225465781413 PREDICTED: beta-ureidopropionase [Vitis 0.995 0.978 0.832 0.0
115472115413 Os07g0485100 [Oryza sativa Japonica Grou 0.963 0.946 0.813 0.0
30698009408 beta-ureidopropionase [Arabidopsis thali 0.985 0.980 0.833 0.0
9759413405 beta-ureidopropionase [Arabidopsis thali 0.985 0.987 0.833 0.0
125558345413 hypothetical protein OsI_26017 [Oryza sa 0.963 0.946 0.810 0.0
>gi|449438222|ref|XP_004136888.1| PREDICTED: beta-ureidopropionase-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/403 (83%), Positives = 370/403 (91%)

Query: 4   KNENGEESVNKDGSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGK 63
           K  +G+++   + S+CGYDSLH LL+ANLKPHI+QEVSRLL GLNCGKPL+ ++L+    
Sbjct: 16  KLNDGKDATTNNASVCGYDSLHQLLAANLKPHIFQEVSRLLLGLNCGKPLQTISLAEPVN 75

Query: 64  ALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLI 123
           +LS EHDFDLQ F F ADKE +REPR+VRVGLIQNSI LPTT  FLDQK+AI +K+K +I
Sbjct: 76  SLSLEHDFDLQAFRFHADKESVREPRIVRVGLIQNSIALPTTAPFLDQKRAILEKVKPII 135

Query: 124 DAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPI 183
           DAAG SGVNILCLQEAW MPFAFCTREKRWCEFAEP+DGEST+FLQ+LA +YNMVI+S I
Sbjct: 136 DAAGASGVNILCLQEAWMMPFAFCTREKRWCEFAEPIDGESTRFLQDLAIRYNMVIVSSI 195

Query: 184 LERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFG 243
           LERDV+HGDT+WNTA++IGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETA+G
Sbjct: 196 LERDVSHGDTLWNTAVVIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYG 255

Query: 244 KIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSI 303
           KI +NICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSI
Sbjct: 256 KIGINICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSI 315

Query: 304 NRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNL 363
           NRVGTE+FPNPFTSGDGKPQH DFGHFYGSSHFSAPD SCTPSLSRFRDGLLISDMDLNL
Sbjct: 316 NRVGTEIFPNPFTSGDGKPQHTDFGHFYGSSHFSAPDASCTPSLSRFRDGLLISDMDLNL 375

Query: 364 CRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLLHK 406
           CRQLKDKWGFRMTARYELYA+MLA Y K D+EPQVISDPLLHK
Sbjct: 376 CRQLKDKWGFRMTARYELYAKMLAQYLKPDFEPQVISDPLLHK 418

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255584039|ref|XP_002532764.1| Beta-ureidopropionase, putative [Ricinus communis] gi|223527493|gb|EEF29621.1| Beta-ureidopropionase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224095800|ref|XP_002310485.1| predicted protein [Populus trichocarpa] gi|222853388|gb|EEE90935.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356521231|ref|XP_003529260.1| PREDICTED: beta-ureidopropionase-like [Glycine max] Back     alignment and taxonomy information
>gi|357476203|ref|XP_003608387.1| Beta-ureidopropionase [Medicago truncatula] gi|355509442|gb|AES90584.1| Beta-ureidopropionase [Medicago truncatula] gi|388510712|gb|AFK43422.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225465781|ref|XP_002268313.1| PREDICTED: beta-ureidopropionase [Vitis vinifera] gi|296087431|emb|CBI34020.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|115472115|ref|NP_001059656.1| Os07g0485100 [Oryza sativa Japonica Group] gi|22775671|dbj|BAC15525.1| putative beta-alanine synthases [Oryza sativa Japonica Group] gi|113611192|dbj|BAF21570.1| Os07g0485100 [Oryza sativa Japonica Group] gi|215765753|dbj|BAG87450.1| unnamed protein product [Oryza sativa Japonica Group] gi|222637048|gb|EEE67180.1| hypothetical protein OsJ_24269 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|30698009|ref|NP_201242.2| beta-ureidopropionase [Arabidopsis thaliana] gi|28193999|gb|AAO33358.1|AF465754_1 N-carbamyl-beta-alanine amidohydrolase [Arabidopsis thaliana] gi|23306402|gb|AAN17428.1| beta-ureidopropionase [Arabidopsis thaliana] gi|30725680|gb|AAP37862.1| At5g64370 [Arabidopsis thaliana] gi|332010498|gb|AED97881.1| beta-ureidopropionase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9759413|dbj|BAB09868.1| beta-ureidopropionase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|125558345|gb|EAZ03881.1| hypothetical protein OsI_26017 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query406
TAIR|locus:2173348408 BETA-UP "AT5G64370" [Arabidops 0.985 0.980 0.810 3.3e-182
DICTYBASE|DDB_G0274123391 pyd3 "Beta-ureidopropionase" [ 0.940 0.976 0.614 1.1e-126
FB|FBgn0037513386 pyd3 "pyd3" [Drosophila melano 0.926 0.974 0.619 6.1e-126
ZFIN|ZDB-GENE-030131-1380384 upb1 "ureidopropionase, beta" 0.928 0.981 0.605 5.1e-122
UNIPROTKB|A7MBE8384 UPB1 "Uncharacterized protein" 0.931 0.984 0.588 8.3e-122
UNIPROTKB|E2QT84384 UPB1 "Uncharacterized protein" 0.928 0.981 0.587 1.5e-120
UNIPROTKB|Q9UBR1384 UPB1 "Beta-ureidopropionase" [ 0.928 0.981 0.579 2e-120
UNIPROTKB|E1BU99383 UPB1 "Uncharacterized protein" 0.923 0.979 0.590 9.8e-119
UNIPROTKB|J9P8R1386 UPB1 "Uncharacterized protein" 0.889 0.935 0.586 8.8e-118
UNIPROTKB|F1RL41384 UPB1 "Uncharacterized protein" 0.928 0.981 0.577 8.8e-118
TAIR|locus:2173348 BETA-UP "AT5G64370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1768 (627.4 bits), Expect = 3.3e-182, P = 3.3e-182
 Identities = 326/402 (81%), Positives = 355/402 (88%)

Query:     5 NENGEESVNKDGSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKA 64
             +ENGE S   +GSICGYDSLH LLSANLKP +YQEV+RLL G NCG+ LE + L  + KA
Sbjct:     6 SENGETSA--EGSICGYDSLHQLLSANLKPELYQEVNRLLLGRNCGRSLEQIVLPESAKA 63

Query:    65 LSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLID 124
             LSS+HDFDLQ   F ADKE +R PRVVRVGLIQNSI LPTT  F DQ + IF KLK +ID
Sbjct:    64 LSSKHDFDLQAASFSADKEQMRNPRVVRVGLIQNSIALPTTAPFSDQTRGIFDKLKPIID 123

Query:   125 AAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPIL 184
             AAGV+GVNILCLQEAWTMPFAFCTRE+RWCEFAEPVDGEST+FLQELA+KYNMVI+SPIL
Sbjct:   124 AAGVAGVNILCLQEAWTMPFAFCTRERRWCEFAEPVDGESTKFLQELAKKYNMVIVSPIL 183

Query:   185 ERDVNHGDTIWNTAXXXXXXXXXXXKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGK 244
             ERD++HG+ +WNTA           KHRKNHIPRVGDFNESTYYMEG+TGHPVFET FGK
Sbjct:   184 ERDIDHGEVLWNTAVIIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGDTGHPVFETVFGK 243

Query:   245 IAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSIN 304
             IAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSIN
Sbjct:   244 IAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSIN 303

Query:   305 RVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLC 364
             RVGTEVFPNPFTSGDGKPQH DFGHFYGSSHFSAPD SCTPSLSR++DGLLISDMDLNLC
Sbjct:   304 RVGTEVFPNPFTSGDGKPQHNDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLC 363

Query:   365 RQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLLHK 406
             RQ KDKWGFRMTARYE+YA++LA Y K D++PQV+SDPLLHK
Sbjct:   364 RQYKDKWGFRMTARYEVYADLLAKYIKPDFKPQVVSDPLLHK 405
GO:0003837 "beta-ureidopropionase activity" evidence=ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0006212 "uracil catabolic process" evidence=IMP
GO:0043562 "cellular response to nitrogen levels" evidence=IEP
DICTYBASE|DDB_G0274123 pyd3 "Beta-ureidopropionase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0037513 pyd3 "pyd3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1380 upb1 "ureidopropionase, beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBE8 UPB1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QT84 UPB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBR1 UPB1 "Beta-ureidopropionase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BU99 UPB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9P8R1 UPB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RL41 UPB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VC97BUP1_MOUSE3, ., 5, ., 1, ., 60.56990.93590.9669yesno
Q5RBM6BUP1_PONAB3, ., 5, ., 1, ., 60.58740.92850.9817yesno
Q03248BUP1_RAT3, ., 5, ., 1, ., 60.57250.93590.9669yesno
Q9UBR1BUP1_HUMAN3, ., 5, ., 1, ., 60.59000.92850.9817yesno
Q964D8BUP1_DICDI3, ., 5, ., 1, ., 60.62950.94580.9820yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.60.946
3rd Layer3.5.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VII0287
beta-ureidopropionase (EC-3.5.1.6) (418 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX3131
dihydropyrimidinase (EC-3.5.2.2) (532 aa)
•  • •• 0.949
gw1.I.1992.1
dihydropyrimidinase (EC-3.5.2.2) (504 aa)
•  • •• 0.948
gw1.III.2325.1
SubName- Full=Putative uncharacterized protein; (514 aa)
   • •  0.900
estExt_Genewise1_v1.C_1580042
aldehyde dehydrogenase (NAD+) (EC-1.2.1.3) (509 aa)
   • •  0.900
gw1.X.6258.1
hypothetical protein (497 aa)
     •  0.899
gw1.V.2645.1
hypothetical protein (479 aa)
     •  0.899
gw1.IV.3946.1
hypothetical protein (502 aa)
     •  0.899
gw1.4555.2.1
annotation not avaliable (88 aa)
     •  0.899
gw1.134.62.1
hypothetical protein (453 aa)
     •  0.899
grail3.0044016002
hypothetical protein (496 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
PLN00202405 PLN00202, PLN00202, beta-ureidopropionase 0.0
cd07587363 cd07587, ML_beta-AS, mammalian-like beta-alanine s 0.0
cd07568287 cd07568, ML_beta-AS_like, mammalian-like beta-alan 1e-145
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 9e-61
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 1e-53
cd07573284 cd07573, CPA, N-carbamoylputrescine amidohydrolase 4e-52
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 9e-44
cd07584258 cd07584, nitrilase_6, Uncharacterized subgroup of 3e-39
TIGR03381279 TIGR03381, agmatine_aguB, N-carbamoylputrescine am 2e-38
PLN02747296 PLN02747, PLN02747, N-carbamolyputrescine amidase 4e-33
cd07580268 cd07580, nitrilase_2, Uncharacterized subgroup of 2e-31
cd07577259 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 4e-29
cd07583253 cd07583, nitrilase_5, Uncharacterized subgroup of 2e-28
cd07572265 cd07572, nit, Nit1, Nit 2, and related proteins, a 3e-24
cd07582294 cd07582, nitrilase_4, Uncharacterized subgroup of 9e-22
cd07578258 cd07578, nitrilase_1_R1, First nitrilase domain of 2e-21
cd07581255 cd07581, nitrilase_3, Uncharacterized subgroup of 4e-21
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 5e-21
cd07576254 cd07576, R-amidase_like, Pseudomonas sp 8e-20
cd07564297 cd07564, nitrilases_CHs, Nitrilases, cyanide hydra 2e-18
cd07569302 cd07569, DCase, N-carbamyl-D-amino acid amidohydro 5e-14
cd07574280 cd07574, nitrilase_Rim1_like, Uncharacterized subg 6e-14
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 6e-14
cd07565291 cd07565, aliphatic_amidase, aliphatic amidases (cl 9e-13
PLN02798286 PLN02798, PLN02798, nitrilase 3e-11
PLN02504346 PLN02504, PLN02504, nitrilase 6e-09
TIGR04048301 TIGR04048, nitrile_sll0784, putative nitrilase, sl 3e-08
cd07579279 cd07579, nitrilase_1_R2, Second nitrilase domain o 3e-07
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 4e-07
COG0815518 COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce 2e-06
PRK00302505 PRK00302, lnt, apolipoprotein N-acyltransferase; R 1e-05
cd07571270 cd07571, ALP_N-acyl_transferase, Apolipoprotein N- 2e-05
PRK13287333 PRK13287, amiF, formamidase; Provisional 3e-05
PRK13981 540 PRK13981, PRK13981, NAD synthetase; Provisional 2e-04
PRK13286345 PRK13286, amiE, acylamide amidohydrolase; Provisio 7e-04
TIGR00546391 TIGR00546, lnt, apolipoprotein N-acyltransferase 0.002
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase Back     alignment and domain information 
 Score =  846 bits (2188), Expect = 0.0
 Identities = 340/402 (84%), Positives = 367/402 (91%)

Query: 5   NENGEESVNKDGSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKA 64
             + E S + DGSICGY+SLH LLSANL P ++QEVSRLL GLNCG+P+E++AL    KA
Sbjct: 1   MNSEEASTSADGSICGYESLHRLLSANLPPELFQEVSRLLLGLNCGRPVEMIALPEAAKA 60

Query: 65  LSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLID 124
           LS  HDFDLQ F F ADKE LR PRVVRVGLIQNSI LPTT  F DQK+AI  K+K +ID
Sbjct: 61  LSKAHDFDLQAFRFTADKEQLRAPRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMID 120

Query: 125 AAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPIL 184
           AAG +GVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGEST+FLQELARKYNMVI+SPIL
Sbjct: 121 AAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSPIL 180

Query: 185 ERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGK 244
           ERDVNHG+T+WNTA++IGN+GNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGK
Sbjct: 181 ERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGK 240

Query: 245 IAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSIN 304
           IAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVG+LSEPMWPIEARNAAIANSYFVGSIN
Sbjct: 241 IAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSIN 300

Query: 305 RVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLC 364
           RVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPD SCTPSLSR++DGLLISDMDLNLC
Sbjct: 301 RVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLC 360

Query: 365 RQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLLHK 406
           RQLKDKWGFRMTARYE+YA+  A Y K D++PQVISDPLLHK
Sbjct: 361 RQLKDKWGFRMTARYEMYADFFAEYLKPDFKPQVISDPLLHK 402

Length = 405
>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase Back     alignment and domain information
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase Back     alignment and domain information
>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp Back     alignment and domain information
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>gnl|CDD|215428 PLN02798, PLN02798, nitrilase Back     alignment and domain information
>gnl|CDD|178120 PLN02504, PLN02504, nitrilase Back     alignment and domain information
>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family Back     alignment and domain information
>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>gnl|CDD|183950 PRK13287, amiF, formamidase; Provisional Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237335 PRK13286, amiE, acylamide amidohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 406
KOG0808387 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
PLN00202405 beta-ureidopropionase 100.0
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
PLN02504346 nitrilase 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
PLN02798286 nitrilase 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
PRK13286345 amiE acylamide amidohydrolase; Provisional 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
PRK13287333 amiF formamidase; Provisional 100.0
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
PRK13981 540 NAD synthetase; Provisional 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 100.0
KOG0806298 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 100.0
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 100.0
KOG0805337 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 100.0
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 100.0
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 100.0
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 99.96
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.95
PRK13825388 conjugal transfer protein TraB; Provisional 99.89
KOG2303 706 consensus Predicted NAD synthase, contains CN hydr 99.56
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 85.77
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 80.78
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-114  Score=790.81  Aligned_cols=383  Identities=75%  Similarity=1.278  Sum_probs=379.3

Q ss_pred             CCCCccccHHHHHHcCCCchhHhhhhhhhccCCCCCCccccccccchhhhhhcCCceEeeeeecccccccCCCCccEEEE
Q 041243           16 GSICGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGL   95 (406)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vrVal   95 (406)
                      |++++++|||++|+++|+++.|+||+|||||    ++++.|.||+++.++|+++||+||||.|.|.+||+|.||.||||+
T Consensus         3 ~a~a~~dsle~~l~~~l~~~~lqev~r~lyg----r~lr~l~lp~~a~~las~~df~lqgy~f~a~keq~r~pr~vrvgl   78 (387)
T KOG0808|consen    3 GAIAGYDSLEQLLSANLKPELLQEVNRLLYG----RSLRQLVLPESAKALASKHDFDLQGYSFSADKEQMRNPRVVRVGL   78 (387)
T ss_pred             CcccccchHHHHHHhcCChHHHHHHHHHHhC----CchhhhcCchHHHHhhcccCcceeeeeeccchhhhcCCcEEEEee
Confidence            7899999999999999999999999999999    999999999999999999999999999999999999999999999


Q ss_pred             EecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhH-HhhhcCCCC-cHHHHHHHHHHH
Q 041243           96 IQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKR-WCEFAEPVD-GESTQFLQELAR  173 (406)
Q Consensus        96 iQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~-~~~~ae~~~-~~~~~~l~~lAk  173 (406)
                      ||+.|.+|+++|+.+|..++++++..+|++|+.+||++|||+|.|+|||+|||++.. |++|||+++ ++++++|+++|+
T Consensus        79 iqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~flqklak  158 (387)
T KOG0808|consen   79 IQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTKFLQKLAK  158 (387)
T ss_pred             ecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999987 999999998 999999999999


Q ss_pred             hcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEeccCC
Q 041243          174 KYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGR  253 (406)
Q Consensus       174 k~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICyD~  253 (406)
                      +++|+||++++||+..|++.+|||+|||+++|.++|++||+|+|++|+|+|++|||+|+.+||||+|.+|||||+|||.+
T Consensus       159 khdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgriavnicygr  238 (387)
T KOG0808|consen  159 KHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIAVNICYGR  238 (387)
T ss_pred             hCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEEEEeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCccccee
Q 041243          254 HHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGS  333 (406)
Q Consensus       254 ~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~  333 (406)
                      |||.+|.+++++||+||||||++.+.+++++|.+++|+.||+|++|++.+|++|++.|||+||||||+|+|+||++|||+
T Consensus       239 hhplnwlmy~lngaeiifnpsatvgalseplwpiearnaaianh~ft~~inrvgtevfpneftsgdgkpah~dfghfygs  318 (387)
T KOG0808|consen  239 HHPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAAIANHYFTGSINRVGTEVFPNEFTSGDGKPAHNDFGHFYGS  318 (387)
T ss_pred             CCchhhhhhhccCceEEECCccccccccCccCchhhhhhhhhhceEEEeecccccccCCCcccCCCCCcccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhcccCCCCCCccccCC
Q 041243          334 SHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDP  402 (406)
Q Consensus       334 S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~~~~~~~~~~~~~~~  402 (406)
                      |++.+||+++++.+++.++|++++++|||+|+|.+++|+|+|+.|+|||+.+++++++|||+|||++||
T Consensus       319 sy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt~ryemya~~lae~~kpdy~p~iv~e~  387 (387)
T KOG0808|consen  319 SYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMTARYEMYADLLAEYIKPDYKPQIVSEP  387 (387)
T ss_pred             eeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceehhhHHHHHHHHHHHhCCCCCCcccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999986

>PLN00202 beta-ureidopropionase Back     alignment and domain information
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>PLN02504 nitrilase Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
2vhh_A405 Crystal Structure Of A Pyrimidine Degrading Enzyme 1e-137
1j31_A262 Crystal Structure Of Hypothetical Protein Ph0642 Fr 3e-17
3ivz_A262 Crystal Structure Of Hyperthermophilic Nitrilase Le 3e-14
2w1v_A276 Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso 4e-10
1f89_A291 Crystal Structure Of Saccharomyces Cerevisiae Nit3, 1e-09
2ggk_A304 The Mutant A302c Of Agrobacterium Radiobacter N-Car 3e-08
1fo6_A304 Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A 3e-08
2ggl_A304 The Mutant A222c Of Agrobacterium Radiobacter N-Car 5e-08
1erz_A303 Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh 2e-07
1ems_A 440 Crystal Structure Of The C. Elegans Nitfhit Protein 2e-07
1uf4_A303 Crystal Structure Of C171aV236A MUTANT OF N-Carbamy 2e-06
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405 Back     alignment and structure 
Iteration: 1

 Score =  486 bits (1251), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/381 (61%), Positives = 287/381 (75%), Gaps = 5/381 (1%)
Query: 23  SLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRADK 82
           +L+  L  +L P   +EV R+L+G+   + LEL     + K ++ ++ FD++G+ F A +
Sbjct: 8   NLNDCLEKHLPPDELKEVKRILYGVEEDQTLEL---PTSAKDIAEQNGFDIKGYRFTARE 64
Query: 83  EFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTM 142
           E  R+ R+VRVG IQNSIV+PTT     Q++AI+ K+K +I AA  +G NI+C QEAWTM
Sbjct: 65  EQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTM 124
Query: 143 PFAFCTREK-RWCEFAEPVD-GESTQFLQELARKYNMVIISPILERDVNHGDTIWNTAXX 200
           PFAFCTREK  WCEFAE  + G +T+ L ELA+ YNMVII  ILERD+ HG+TIWNTA  
Sbjct: 125 PFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVV 184
Query: 201 XXXXXXXXXKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLNWL 260
                    KHRKNHIPRVGDFNESTYYMEGNTGHPVFET FGK+AVNICYGRHHP NW+
Sbjct: 185 ISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWM 244
Query: 261 AFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDG 320
            FGLNGAEIVFNPSAT+G LSEP+W IEARNAAIANSYF   INRVGTE FPN +TSGDG
Sbjct: 245 MFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDG 304
Query: 321 KPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYE 380
              HK+FG FYGSS+ +APDGS TPSLSR +DGLL+ ++DLNLCRQ+KD WGFRMT R  
Sbjct: 305 NKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVP 364
Query: 381 LYAEMLANYSKADYEPQVISD 401
           LYAE     S+  ++PQ+I +
Sbjct: 365 LYAESFKKASEHGFKPQIIKE 385
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262 Back     alignment and structure
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262 Back     alignment and structure
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276 Back     alignment and structure
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291 Back     alignment and structure
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303 Back     alignment and structure
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query406
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 1e-165
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 2e-89
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 8e-71
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 7e-68
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 6e-58
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 1e-55
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 6e-36
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 9e-33
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 1e-27
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 2e-26
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 4e-26
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 2e-07
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 4e-06
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 1e-05
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 7e-05
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Back     alignment and structure
 Score =  469 bits (1208), Expect = e-165
 Identities = 240/386 (62%), Positives = 294/386 (76%), Gaps = 5/386 (1%)

Query: 21  YDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPLELVALSANGKALSSEHDFDLQGFCFRA 80
             +L+  L  +L P   +EV R+L+G+   + LEL   +   K ++ ++ FD++G+ F A
Sbjct: 6   LKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSA---KDIAEQNGFDIKGYRFTA 62

Query: 81  DKEFLREPRVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAW 140
            +E  R+ R+VRVG IQNSIV+PTT     Q++AI+ K+K +I AA  +G NI+C QEAW
Sbjct: 63  REEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAW 122

Query: 141 TMPFAFCTREK-RWCEFAEPV-DGESTQFLQELARKYNMVIISPILERDVNHGDTIWNTA 198
           TMPFAFCTREK  WCEFAE   +G +T+ L ELA+ YNMVII  ILERD+ HG+TIWNTA
Sbjct: 123 TMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTA 182

Query: 199 IIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHHPLN 258
           ++I N G  +GKHRKNHIPRVGDFNESTYYMEGNTGHPVFET FGK+AVNICYGRHHP N
Sbjct: 183 VVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQN 242

Query: 259 WLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSG 318
           W+ FGLNGAEIVFNPSAT+G LSEP+W IEARNAAIANSYF   INRVGTE FPN +TSG
Sbjct: 243 WMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSG 302

Query: 319 DGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTAR 378
           DG   HK+FG FYGSS+ +APDGS TPSLSR +DGLL+ ++DLNLCRQ+KD WGFRMT R
Sbjct: 303 DGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQR 362

Query: 379 YELYAEMLANYSKADYEPQVISDPLL 404
             LYAE     S+  ++PQ+I +   
Sbjct: 363 VPLYAESFKKASEHGFKPQIIKETQF 388
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281 Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 82.25
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
Probab=100.00  E-value=1.9e-79  Score=623.12  Aligned_cols=382  Identities=62%  Similarity=1.068  Sum_probs=324.3

Q ss_pred             CccccHHHHHHcCCCchhHhhhhhhhccCCCCCCc-cccccccchhhhhhcCCceEeeeeecccccccCCCCccEEEEEe
Q 041243           19 CGYDSLHTLLSANLKPHIYQEVSRLLHGLNCGKPL-ELVALSANGKALSSEHDFDLQGFCFRADKEFLREPRVVRVGLIQ   97 (406)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~vrValiQ   97 (406)
                      .+|+|||++|+||||+++|+||||||||    +++ ++|+||+.+.++|++++|+|+||.|.+.+|+++++++||||++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVAlvQ   79 (405)
T 2vhh_A            4 FELKNLNDCLEKHLPPDELKEVKRILYG----VEEDQTLELPTSAKDIAEQNGFDIKGYRFTAREEQTRKRRIVRVGAIQ   79 (405)
T ss_dssp             --CCCHHHHHTTTSCHHHHHHHHHHHSS----SSSCCBCCCCHHHHHHHHHTTCEEEEEECCCCCCSSSCCCEEEEEEEE
T ss_pred             cccchHHHHHHhcCCHHHHHHHHHHhcC----CccCccCCCCHHHHHHhhhcCceEeeeeeccchhhhcCCCCCEEEEEe
Confidence            4799999999999999999999999999    888 89999999999999999999999999999999999999999999


Q ss_pred             cccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchh-HHhhhcCCC-CcHHHHHHHHHHHhc
Q 041243           98 NSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREK-RWCEFAEPV-DGESTQFLQELARKY  175 (406)
Q Consensus        98 ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~-~~~~~ae~~-~~~~~~~l~~lAkk~  175 (406)
                      +++...+..|..++.++|++++.++++.|+++|+|||||||+|++||.++.++. .|.++++.. .+++++.|+++|+++
T Consensus        80 ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~~~~l~~lA~~~  159 (405)
T 2vhh_A           80 NSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAY  159 (405)
T ss_dssp             CCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHHHHHHHHHHHHT
T ss_pred             ccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHHHHHHHHHHHHC
Confidence            999876655667899999999999999999999999999999999997765332 366777776 488999999999999


Q ss_pred             CcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEEeccCCcc
Q 041243          176 NMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVNICYGRHH  255 (406)
Q Consensus       176 ~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~ICyD~~~  255 (406)
                      +++|++|+.++....++++||++++|+++|+++++|+|+||+++|.|.|+.+|.+|+.++++|+++++|||++||||++|
T Consensus       160 ~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g~f~E~~~f~~G~~~~~vf~~~~~riG~~ICyD~~f  239 (405)
T 2vhh_A          160 NMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHH  239 (405)
T ss_dssp             TCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC----------CCCCSCCCEEEETTEEEEECCGGGGGC
T ss_pred             CEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCCCcCcccceeCCCCCCeeEEECCEEEEEEEeccccC
Confidence            99999999988643246899999999999999999999999999999999999999966899999999999999999999


Q ss_pred             hHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCcccceeeE
Q 041243          256 PLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSH  335 (406)
Q Consensus       256 Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~~~~G~S~  335 (406)
                      |++++.++.+|||+|++|++|.+..+..+|..++++||+||++||++||++|.+.+++.+++++|+++|.+...|+|.|+
T Consensus       240 Pe~~r~la~~GAdill~psa~~~~~~~~~w~~l~raRAiEn~~~Vv~aN~vG~~~~~~~~~~~~g~~~~~~~~~f~G~S~  319 (405)
T 2vhh_A          240 PQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSY  319 (405)
T ss_dssp             HHHHHHHHHTTCSEEEEEECCBCTTTHHHHHHHHHHHHHHHTSEEEEEECEECCCCC-----------------EECCCC
T ss_pred             hHHHHHHHHcCCCEEEEcccCCCCCCHHHHHHHHHHHHHHcCceEEEeccccccccccccccccCccccccCceeccccc
Confidence            99999999999999999999987766779999999999999999999999999988889999999888888888999999


Q ss_pred             EECCCCCeeccCCCCCceEEEEEeehhHHHHHHhhcCCCccCchHHHHHHHhcccCCCCCCccccCCCC
Q 041243          336 FSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWGFRMTARYELYAEMLANYSKADYEPQVISDPLL  404 (406)
Q Consensus       336 Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r~~~~~~~~~r~dlY~~~~~~~~~~~~~~~~~~~~~~  404 (406)
                      |++|+|+++++++..++++++++||++.++++|++|++++++|+|+|+.++++.++++|+||||++|.+
T Consensus       320 IidP~G~vla~~~~~~e~il~aeiDl~~~~~~R~~~p~~~~rR~~lY~~~~~~~~~~~~~~~~~~~~~~  388 (405)
T 2vhh_A          320 VAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLYAESFKKASEHGFKPQIIKETQF  388 (405)
T ss_dssp             CBCTTSCBCCCCCSSSCEEEEEEEETTHHHHHHHHHCTTTTCCHHHHHHHHHHHHSTTCCCCEECCC--
T ss_pred             eECCCCCEeeccCCCCCeEEEEEECHHHHHHHHHhCCchhhcCHHHHHHHHHHhhcCCCCCccccCCCC
Confidence            999999999998878999999999999999999999999999999999999999999999999999865
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 406
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 5e-38
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 4e-35
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 1e-21
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 6e-18
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score =  137 bits (344), Expect = 5e-38
 Identities = 60/311 (19%), Positives = 113/311 (36%), Gaps = 26/311 (8%)

Query: 89  RVVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPF---- 144
           R + + + Q   +        + ++ +  +L  ++  A   G N +   E     F    
Sbjct: 2   RQMILAVGQQGPI-----ARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRW 56

Query: 145 AFCTREKRWCEFAEPVDGESTQFLQELARKYNMVIISPILERDVNHGD-TIWNTAIIIGN 203
            F    +    +   + G   + L E A +  +       E  V  G    +NT+I++  
Sbjct: 57  HFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDK 116

Query: 204 HGNIIGKHRKNHIPRVGDFNE--------STYYMEGNTGHPVFETAFGKIAVNICYGRHH 255
            G I+GK+RK H+P   ++            Y+  G+ G PV++    K+ + I   R  
Sbjct: 117 SGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRW 176

Query: 256 PLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPF 315
           P  W   GL GAEI+     T              +     S                 +
Sbjct: 177 PEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQ-------AGSYQNGAW 229

Query: 316 TSGDGKPQHKDFGHFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLKDKWG-FR 374
           ++  GK   ++     G S   AP G      +   D ++ + +DL+ CR+L++    F+
Sbjct: 230 SAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFK 289

Query: 375 MTARYELYAEM 385
              + + Y  +
Sbjct: 290 QHRQPQHYGLI 300
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query406
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.4e-50  Score=385.12  Aligned_cols=258  Identities=30%  Similarity=0.501  Sum_probs=229.3

Q ss_pred             ccEEEEEecccCCCCcccchhhHHHHHHHHHHHHHHHhhCCCeEEEecCCCCCCCCCCcchhHHhhhcCCC-CcHHHHHH
Q 041243           90 VVRVGLIQNSIVLPTTLHFLDQKKAIFQKLKLLIDAAGVSGVNILCLQEAWTMPFAFCTREKRWCEFAEPV-DGESTQFL  168 (406)
Q Consensus        90 ~vrValiQ~~i~~~~~~p~~~~~~~n~~~i~~~i~~A~~~gvdLVvfPE~~l~g~~~~~~~~~~~~~ae~~-~~~~~~~l  168 (406)
                      .||||++|.++.       .+|.+.|++++.++++.|+++|+|||||||++++||.+..... ....+... .+++.+.+
T Consensus         1 ~~ria~~Q~~~~-------~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~-~~~~~~~~~~~~~~~~~   72 (262)
T d1j31a_           1 MVKVGYIQMEPK-------ILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREE-VFDVAQQIPEGETTTFL   72 (262)
T ss_dssp             CEEEEEEECCCC-------TTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSSHHH-HHTTCBCTTTSHHHHHH
T ss_pred             CEEEEEEECCCC-------CCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCchhhhhH-hhhhhhhcccCHHHHHH
Confidence            489999999754       5899999999999999999999999999999999997554332 23344333 37899999


Q ss_pred             HHHHHhcCcEEEeeceeeccCCCCeeEEEEEEEcCCCcEEEeeeccCCCCCCCCCcccceecCCCCCceEEcCCceEEEE
Q 041243          169 QELARKYNMVIISPILERDVNHGDTIWNTAIIIGNHGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAVN  248 (406)
Q Consensus       169 ~~lAkk~~i~Iv~G~~e~~~~~~~~~~Nsavvi~~~G~vl~~y~K~hl~~~g~f~E~~~~~~G~~~~~vf~t~~gkigv~  248 (406)
                      +++|++++++|++|+.+++   ++++||++++|++ |++++.|+|+||+.    .|..+|.+|+..+++|+++++|||++
T Consensus        73 ~~~A~~~~i~i~~g~~~~~---~~~~~n~~~~i~~-g~~~~~y~K~~l~~----~e~~~~~~G~~~~~v~~~~~~~ig~~  144 (262)
T d1j31a_          73 MELARELGLYIVAGTAEKS---GNYLYNSAVVVGP-RGYIGKYRKIHLFY----REKVFFEPGDLGFKVFDIGFAKVGVM  144 (262)
T ss_dssp             HHHHHHHTCEEEEEEEEEE---TTEEEEEEEEEET-TEEEEEEECSSCCT----THHHHCCCCCSCSCEEECSSCEEEEC
T ss_pred             HHhhhccCceEEeeeeecc---cccccccceEEEe-eeEEEEEeeeecCc----cCceeECCCCCCceEEEeCCceEEEE
Confidence            9999999999999999887   6789999999985 78999999999985    67889999998789999999999999


Q ss_pred             eccCCcchHHHHHHHHCCCcEEEEcCCCCCCCCcCcHHHHHHHHHHHcCcEEEEECCCCCCCCCCCCCCCCCCCCCCCCc
Q 041243          249 ICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFG  328 (406)
Q Consensus       249 ICyD~~~Pe~~~~~~~~Gadii~~Psa~~~~~~~~~w~~~~r~rAien~~~vv~aN~~G~~~~~~~~~~~~G~~~~~~~~  328 (406)
                      ||||.+||++++.++.+|||+|++|+++..    ..|....++||+||++|++++|++|.+.         |       .
T Consensus       145 IC~D~~~pe~~~~~~~~ga~lil~p~~~~~----~~~~~~~~~rA~en~~~vv~~n~~G~~~---------~-------~  204 (262)
T d1j31a_         145 ICFDWFFPESARTLALKGAEIIAHPANLVM----PYAPRAMPIRALENRVYTITADRVGEER---------G-------L  204 (262)
T ss_dssp             CGGGGGSHHHHHHHHHTTCSEEEEECCCCS----SCHHHHHHHHHHHHTCEEEEECCCSEET---------T-------E
T ss_pred             EehhhhhhHHHHHHHHhccccccCCccccc----ccchhhhhhhhhcccceEEEEecccccC---------C-------c
Confidence            999999999999999999999999998753    4588889999999999999999999862         2       5


Q ss_pred             ccceeeEEECCCCCeeccCCCCCceEEEEEeehhHHHHHH--hhcCCCccCchHHHH
Q 041243          329 HFYGSSHFSAPDGSCTPSLSRFRDGLLISDMDLNLCRQLK--DKWGFRMTARYELYA  383 (406)
Q Consensus       329 ~~~G~S~Ii~P~G~i~~~~~~~~e~llvaeidl~~~~~~r--~~~~~~~~~r~dlY~  383 (406)
                      .|+|+|+|++|+|++++.++.+++++++++||++.++..|  ..++++.+||+|+|.
T Consensus       205 ~~~G~S~i~~p~G~~l~~~~~~~e~i~~a~iDl~~~~~~r~~~~~~~~~~rr~d~y~  261 (262)
T d1j31a_         205 KFIGKSLIASPKAEVLSIASETEEEIGVVEIDLNLARNKRLNDMNDIFKDRREEYYF  261 (262)
T ss_dssp             ECCCCCEEECTTSCEEEECCSSCCEEEEEEECHHHHHCCEEETTEETTTTCCGGGSC
T ss_pred             cccCCCEEEeCCCCEEEEcCCCCCEEEEEEEEcHHHHHHHHhccCCchhhCCccccC
Confidence            7899999999999999999889999999999999998766  568899999999995
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure