Citrus Sinensis ID: 041275

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
MATFSLSAAISPSLTVPISSNSKCPVFSVSFPSKNYAGNTLKLEPLSTTNTRVFSAPETLAGSESSAVEAEVPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHccEEEcccccccEEEEEEEEcccccccccccEEEEEEEEEEEEEEcccHHHHHHHHccccccccEEEEEc
ccEEEEcccccccccccccccccccEEEEEEEcccccccEEEEEccccccEEEEEccccccccccccccccccccEEEcccHHHHHHcccEEEEEEEccHHHHHHHHHHHHHHHHHcccEEEccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccEEEEEc
matfslsaaispsltvpissnskcpvfsvsfpsknyagntlkleplsttntrvfsapetlagsessaveaevpetlsvssgadqmapkqKIRIKLRSYWVPLIEDSCKQIMDAARTtnaktmgpvplptkkriycvlksphvhkdarfhFEIRTHQRLIDILYPTAQTIDSLMqldlpagvdvevkl
matfslsaaispsltvpissnsKCPVFSVSFPSKNYAGNTLKLEPLSTTNTRVFSAPETlagsessaveaEVPEtlsvssgadqmapkqkiRIKLRSYWVPLIEDSCKQIMDAARTtnaktmgpvplpTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMqldlpagvdvevkl
MATFSLSAAISPSLTVPISSNSKCPVFSVSFPSKNYAGNTLKLEPLSTTNTRVFSAPETLAGsessaveaevPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
************************PVFSVSF***********************************************************IRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAG*******
***************************************************************************************KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
MATFSLSAAISPSLTVPISSNSKCPVFSVSFPSKNYAGNTLKLEPLSTTNTRVFSAP******************************KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
****SLSAAISPSLTVPISSNSKCPVFSVSFPSKNYAGNTLKLEPLSTTNTRVFSAPETL**************TLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATFSLSAAISPSLTVPISSNSKCPVFSVSFPSKNYAGNTLKLEPLSTTNTRVFSAPETLAGSESSAVEAEVPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query187 2.2.26 [Sep-21-2011]
Q9M4Y3197 30S ribosomal protein S10 N/A no 0.737 0.700 0.823 2e-64
Q9LK61191 30S ribosomal protein S10 yes no 1.0 0.979 0.670 6e-63
P17009105 Cyanelle 30S ribosomal pr N/A no 0.550 0.980 0.647 6e-35
P51286105 30S ribosomal protein S10 N/A no 0.524 0.933 0.653 5e-34
B7K833105 30S ribosomal protein S10 yes no 0.534 0.952 0.62 7e-34
B1XI62105 30S ribosomal protein S10 yes no 0.534 0.952 0.62 1e-33
B2J5B2105 30S ribosomal protein S10 yes no 0.534 0.952 0.62 1e-33
B0JSD9105 30S ribosomal protein S10 yes no 0.534 0.952 0.62 1e-33
P48852105 30S ribosomal protein S10 N/A no 0.534 0.952 0.62 2e-33
P74226105 30S ribosomal protein S10 N/A no 0.534 0.952 0.62 2e-33
>sp|Q9M4Y3|RR10_MESCR 30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1 Back     alignment and function desciption
 Score =  244 bits (624), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 122/142 (85%), Gaps = 4/142 (2%)

Query: 50  NTRVFSAPETL----AGSESSAVEAEVPETLSVSSGADQMAPKQKIRIKLRSYWVPLIED 105
           N RVF+APE L     G ES   E      L + + +DQMAPKQKIRIKLRSYWVPLIED
Sbjct: 56  NVRVFAAPEVLESQETGPESYVEEGSETSALGIGADSDQMAPKQKIRIKLRSYWVPLIED 115

Query: 106 SCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPT 165
           SCKQIMDAARTTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTHQRLIDILYPT
Sbjct: 116 SCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTHQRLIDILYPT 175

Query: 166 AQTIDSLMQLDLPAGVDVEVKL 187
           AQTIDSLMQLDLPAGVDVEVKL
Sbjct: 176 AQTIDSLMQLDLPAGVDVEVKL 197

Mesembryanthemum crystallinum (taxid: 3544)
>sp|Q9LK61|RR10_ARATH 30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=1 SV=1 Back     alignment and function description
>sp|P17009|RR10_CYAPA Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1 Back     alignment and function description
>sp|P51286|RR10_PORPU 30S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1 Back     alignment and function description
>sp|B7K833|RS10_CYAP7 30S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) GN=rpsJ PE=3 SV=1 Back     alignment and function description
>sp|B1XI62|RS10_SYNP2 30S ribosomal protein S10 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsJ PE=3 SV=1 Back     alignment and function description
>sp|B2J5B2|RS10_NOSP7 30S ribosomal protein S10 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsJ PE=3 SV=1 Back     alignment and function description
>sp|B0JSD9|RS10_MICAN 30S ribosomal protein S10 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsJ PE=3 SV=1 Back     alignment and function description
>sp|P48852|RS10_SPIPL 30S ribosomal protein S10 OS=Spirulina platensis GN=rpsJ PE=3 SV=1 Back     alignment and function description
>sp|P74226|RS10_SYNY3 30S ribosomal protein S10 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpsJ PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
449465511206 PREDICTED: 30S ribosomal protein S10, ch 0.983 0.893 0.674 3e-64
224116652205 predicted protein [Populus trichocarpa] 0.989 0.902 0.637 3e-63
75274488197 RecName: Full=30S ribosomal protein S10, 0.737 0.700 0.823 9e-63
119720820193 30S ribosomal protein S10-like [Brassica 1.0 0.968 0.678 1e-62
225461868203 PREDICTED: 30S ribosomal protein S10, ch 0.754 0.694 0.771 3e-61
15231154191 30S ribosomal protein S10 [Arabidopsis t 1.0 0.979 0.670 3e-61
296089888200 unnamed protein product [Vitis vinifera] 0.754 0.705 0.771 4e-61
297834126191 hypothetical protein ARALYDRAFT_478688 [ 1.0 0.979 0.670 8e-61
388497586196 unknown [Lotus japonicus] 0.839 0.801 0.715 2e-60
83032214190 unknown [Brassica rapa] 0.839 0.826 0.751 2e-60
>gi|449465511|ref|XP_004150471.1| PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Cucumis sativus] gi|449519589|ref|XP_004166817.1| PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  249 bits (637), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 155/209 (74%), Gaps = 25/209 (11%)

Query: 1   MATFSLSAAI--SPSLTVPISSNSKCPVFSVSFPSKNYAGNTLKLEPL--STTNTRVFSA 56
           MA  SLSA I  SP+L   +SS+S  P F   FP+ +     LKL+PL  S  +TR+++A
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFP-PFPASS--STALKLKPLQFSFPSTRLYAA 57

Query: 57  PETL-------------AGSESSAVEAE---VPET--LSVSSGADQMAPKQKIRIKLRSY 98
           PE L              GS  S +E E   VP T  LS+    D++APKQKIRIKLRSY
Sbjct: 58  PEVLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSY 117

Query: 99  WVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRL 158
           WVPLIEDSCKQIMDAAR TNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRL
Sbjct: 118 WVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRL 177

Query: 159 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
           IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 178 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224116652|ref|XP_002317356.1| predicted protein [Populus trichocarpa] gi|222860421|gb|EEE97968.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|75274488|sp|Q9M4Y3.1|RR10_MESCR RecName: Full=30S ribosomal protein S10, chloroplastic; Flags: Precursor gi|188036211|pdb|3BBN|J Chain J, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. gi|7578929|gb|AAF64190.1|AF245665_1 plastid ribosomal protein S10 precursor [Mesembryanthemum crystallinum] Back     alignment and taxonomy information
>gi|119720820|gb|ABL97980.1| 30S ribosomal protein S10-like [Brassica rapa] Back     alignment and taxonomy information
>gi|225461868|ref|XP_002265045.1| PREDICTED: 30S ribosomal protein S10, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|15231154|ref|NP_187919.1| 30S ribosomal protein S10 [Arabidopsis thaliana] gi|334185302|ref|NP_001189875.1| 30S ribosomal protein S10 [Arabidopsis thaliana] gi|75311242|sp|Q9LK61.1|RR10_ARATH RecName: Full=30S ribosomal protein S10, chloroplastic; Flags: Precursor gi|14326495|gb|AAK60293.1|AF385700_1 AT3g13120/MJG19_6 [Arabidopsis thaliana] gi|16226587|gb|AAL16207.1|AF428438_1 AT3g13120/MJG19_6 [Arabidopsis thaliana] gi|10172599|dbj|BAB01403.1| unnamed protein product [Arabidopsis thaliana] gi|19548033|gb|AAL87380.1| AT3g13120/MJG19_6 [Arabidopsis thaliana] gi|332641777|gb|AEE75298.1| 30S ribosomal protein S10 [Arabidopsis thaliana] gi|332641778|gb|AEE75299.1| 30S ribosomal protein S10 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|296089888|emb|CBI39707.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297834126|ref|XP_002884945.1| hypothetical protein ARALYDRAFT_478688 [Arabidopsis lyrata subsp. lyrata] gi|297330785|gb|EFH61204.1| hypothetical protein ARALYDRAFT_478688 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388497586|gb|AFK36859.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|83032214|gb|ABB97026.1| unknown [Brassica rapa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
TAIR|locus:2089984191 AT3G13120 [Arabidopsis thalian 1.0 0.979 0.654 3.2e-58
TIGR_CMR|GSU_2858102 GSU_2858 "ribosomal protein S1 0.540 0.990 0.584 2.8e-27
TIGR_CMR|CHY_2310102 CHY_2310 "ribosomal protein S1 0.534 0.980 0.53 5.7e-27
UNIPROTKB|P0A5X0101 rpsJ "30S ribosomal protein S1 0.524 0.970 0.540 1.5e-26
TIGR_CMR|BA_0109102 BA_0109 "ribosomal protein S10 0.534 0.980 0.52 4e-26
TIGR_CMR|CPS_0874103 CPS_0874 "ribosomal protein S1 0.529 0.961 0.545 8.4e-26
UNIPROTKB|Q9KNY3103 rpsJ "30S ribosomal protein S1 0.529 0.961 0.545 4.6e-25
TIGR_CMR|SO_0230103 SO_0230 "ribosomal protein S10 0.529 0.961 0.535 4.6e-25
TIGR_CMR|VC_2597103 VC_2597 "ribosomal protein S10 0.529 0.961 0.545 4.6e-25
UNIPROTKB|P0A7R5103 rpsJ [Escherichia coli K-12 (t 0.529 0.961 0.525 2.6e-24
TAIR|locus:2089984 AT3G13120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
 Identities = 125/191 (65%), Positives = 143/191 (74%)

Query:     1 MATFSLSAAISPSLTVPISSNSKCPVFSVSFPSKNYAG--NTLKLEPLSTTNTRVFSAPE 58
             MA  ++S+ + PS  +P SS S   +     PS +  G  ++  L   S + T+VF+ P+
Sbjct:     1 MAVSTVSSFLLPSFGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAVPD 60

Query:    59 TL--AGXXXXXXXXXXPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAART 116
             TL              P + S+S  AD+MAPKQKIRIKLRSYWVPLIEDSCKQI+DAAR 
Sbjct:    61 TLDPTPEILDEPASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARN 120

Query:   117 TNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLD 176
             TNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+IDILYPTAQTIDSLMQLD
Sbjct:   121 TNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLD 180

Query:   177 LPAGVDVEVKL 187
             LPAGVDVEVKL
Sbjct:   181 LPAGVDVEVKL 191
GO:0003723 "RNA binding" evidence=IEA
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015935 "small ribosomal subunit" evidence=ISS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0015979 "photosynthesis" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
TIGR_CMR|GSU_2858 GSU_2858 "ribosomal protein S10" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2310 CHY_2310 "ribosomal protein S10" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P0A5X0 rpsJ "30S ribosomal protein S10" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0109 BA_0109 "ribosomal protein S10" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0874 CPS_0874 "ribosomal protein S10" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNY3 rpsJ "30S ribosomal protein S10" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0230 SO_0230 "ribosomal protein S10" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2597 VC_2597 "ribosomal protein S10" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0A7R5 rpsJ [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M4Y3RR10_MESCRNo assigned EC number0.82390.73790.7005N/Ano
Q9LK61RR10_ARATHNo assigned EC number0.67011.00.9790yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XI2898
SubName- Full=Putative uncharacterized protein; (205 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.16155.2.1
Predicted protein (206 aa)
•  •• • 0.939
fgenesh4_pm.C_LG_XIII000297
hypothetical protein (222 aa)
• ••  • 0.914
gw1.IV.3048.1
SubName- Full=Putative uncharacterized protein; (227 aa)
• ••• • 0.900
eugene3.00141000
hypothetical protein (227 aa)
•  •  • 0.851
rpl22
50S ribosomal protein L22 ; This protein binds specifically to 23S rRNA (By similarity) (129 aa)
•  •  • 0.837
fgenesh4_pg.C_scaffold_166000032
hypothetical protein (285 aa)
•  •  • 0.835
fgenesh4_pm.C_LG_VI000651
hypothetical protein (279 aa)
•  •  • 0.830
gw1.II.2942.1
SubName- Full=Putative uncharacterized protein; (218 aa)
•  •  • 0.785
rps8
RecName- Full=30S ribosomal protein S8, chloroplastic;; One of the primary rRNA binding protein [...] (134 aa)
•  •• • 0.763
estExt_fgenesh4_pm.C_LG_IV0116
hypothetical protein (160 aa)
•  •  • 0.718

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
PRK00596102 PRK00596, rpsJ, 30S ribosomal protein S10; Reviewe 4e-56
CHL00135101 CHL00135, rps10, ribosomal protein S10; Validated 1e-51
TIGR0104999 TIGR01049, rpsJ_bact, ribosomal protein S10, bacte 7e-51
pfam0033897 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S 1e-47
COG0051104 COG0051, RpsJ, Ribosomal protein S10 [Translation, 3e-47
TIGR0104699 TIGR01046, S10_Arc_S20_Euk, ribosomal protein S10( 6e-18
PRK12271102 PRK12271, rps10p, 30S ribosomal protein S10P; Revi 1e-16
PTZ00039115 PTZ00039, PTZ00039, 40S ribosomal protein S20; Pro 8e-12
>gnl|CDD|179076 PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed Back     alignment and domain information 
 Score =  171 bits (437), Expect = 4e-56
 Identities = 60/100 (60%), Positives = 83/100 (83%)

Query: 88  KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 147
           KQKIRI+L+++   L++ S K+I++ A+ T A+  GP+PLPTKK  + VL+SPHV+KD+R
Sbjct: 3   KQKIRIRLKAFDHRLLDQSAKKIVETAKRTGAQVRGPIPLPTKKERFTVLRSPHVNKDSR 62

Query: 148 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
             FEIRTH+RLIDI+ PT +T+D+LM+LDLPAGVDVE+KL
Sbjct: 63  EQFEIRTHKRLIDIVDPTPKTVDALMKLDLPAGVDVEIKL 102

Length = 102
>gnl|CDD|177057 CHL00135, rps10, ribosomal protein S10; Validated Back     alignment and domain information
>gnl|CDD|130121 TIGR01049, rpsJ_bact, ribosomal protein S10, bacterial/organelle Back     alignment and domain information
>gnl|CDD|201165 pfam00338, Ribosomal_S10, Ribosomal protein S10p/S20e Back     alignment and domain information
>gnl|CDD|223129 COG0051, RpsJ, Ribosomal protein S10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|130118 TIGR01046, S10_Arc_S20_Euk, ribosomal protein S10(archaeal)/S20(eukaryotic) Back     alignment and domain information
>gnl|CDD|183392 PRK12271, rps10p, 30S ribosomal protein S10P; Reviewed Back     alignment and domain information
>gnl|CDD|173336 PTZ00039, PTZ00039, 40S ribosomal protein S20; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 187
COG0051104 RpsJ Ribosomal protein S10 [Translation, ribosomal 100.0
PRK00596102 rpsJ 30S ribosomal protein S10; Reviewed 100.0
TIGR0104999 rpsJ_bact ribosomal protein S10, bacterial/organel 100.0
CHL00135101 rps10 ribosomal protein S10; Validated 100.0
PRK12271102 rps10p 30S ribosomal protein S10P; Reviewed 100.0
TIGR0104699 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S2 100.0
PTZ00039115 40S ribosomal protein S20; Provisional 100.0
PF0033897 Ribosomal_S10: Ribosomal protein S10p/S20e; InterP 99.98
KOG3321175 consensus Mitochondrial ribosomal protein S10 [Tra 99.92
KOG0900121 consensus 40S ribosomal protein S20 [Translation, 99.78
KOG4060176 consensus Uncharacterized conserved protein [Funct 98.61
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=6.3e-37  Score=233.93  Aligned_cols=100  Identities=57%  Similarity=0.950  Sum_probs=98.0

Q ss_pred             ccEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcCCCceeeEEEEEEEEEEEEECCCHH
Q 041275           88 KQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQ  167 (187)
Q Consensus        88 ~~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~KKSrEqFEiRtHKR~I~I~~~t~~  167 (187)
                      .++++|+|+|||+..||.+|.+|++.|+..|+.++||+|||||+.+||+||||||||++|||||||+|||+|+|.+++++
T Consensus         3 ~~kirI~L~s~d~~~LD~~~~~Ive~akrtg~~v~GPiPLPTk~~~~tvlrsP~~~k~s~e~fEmr~HkRlidi~~~~~~   82 (104)
T COG0051           3 KQKIRIRLKSFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGEKDSREQFEMRTHKRLIDIVDPTPK   82 (104)
T ss_pred             CceEEEEEecCCHHHHHHHHHHHHHHHHHhCCeeeCCccCCCceEEEEEEeCCCCCCchHHHhhhheeeeEEEeecCCHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCCCCCceEEEEC
Q 041275          168 TIDSLMQLDLPAGVDVEVKL  187 (187)
Q Consensus       168 ~i~~liq~~lP~GV~IeVkl  187 (187)
                      +++.||.+.+|+||+||+++
T Consensus        83 ~~~~Lm~i~~p~gV~vei~~  102 (104)
T COG0051          83 TVDALMRLDLPAGVDVEIKL  102 (104)
T ss_pred             HHHHHhcccCCCCceEEEEE
Confidence            99999999999999999985

>PRK00596 rpsJ 30S ribosomal protein S10; Reviewed Back     alignment and domain information
>TIGR01049 rpsJ_bact ribosomal protein S10, bacterial/organelle Back     alignment and domain information
>CHL00135 rps10 ribosomal protein S10; Validated Back     alignment and domain information
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed Back     alignment and domain information
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic) Back     alignment and domain information
>PTZ00039 40S ribosomal protein S20; Provisional Back     alignment and domain information
>PF00338 Ribosomal_S10: Ribosomal protein S10p/S20e; InterPro: IPR001848 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG3321 consensus Mitochondrial ribosomal protein S10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0900 consensus 40S ribosomal protein S20 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
3bbn_J197 Homology Model For The Spinach Chloroplast 30s Subu 2e-63
1p6g_J103 Real Space Refined Coordinates Of The 30s Subunit F 1e-26
3uxs_J105 The Structure Of Thermorubin In Complex With The 70 4e-26
3fih_J98 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 6e-26
1i94_J104 Crystal Structures Of The Small Ribosomal Subunit W 9e-26
1fjg_J105 Structure Of The Thermus Thermophilus 30s Ribosomal 9e-26
1pns_J98 Crystal Structure Of A Streptomycin Dependent Ribos 1e-25
3fic_J99 T. Thermophilus 70s Ribosome In Complex With Mrna, 1e-25
2gy9_J96 Structure Of The 30s Subunit Of A Pre-Translocation 2e-25
3d3b_J87 Structural And Functional Analysis Of The E. Coli N 2e-15
3d3c_J87 Structural And Functional Analysis Of The E. Coli N 4e-15
3r2d_J84 Crystal Structure Of Antitermination Factors Nusb A 3e-14
3r2c_J83 Crystal Structure Of Antitermination Factors Nusb A 4e-14
3j20_L102 Promiscuous Behavior Of Proteins In Archaeal Riboso 6e-10
2zkq_j119 Structure Of A Mammalian Ribosomal 40s Subunit With 9e-08
1s1h_J100 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-07
3jyv_J96 Structure Of The 40s Rrna And Proteins And PE TRNA 2e-07
3iz6_J128 Localization Of The Small Subunit Ribosomal Protein 2e-07
3izb_J121 Localization Of The Small Subunit Ribosomal Protein 1e-06
2xzm_J120 Crystal Structure Of The Eukaryotic 40s Ribosomal S 4e-04
>pdb|3BBN|J Chain J, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 197 Back     alignment and structure 
Iteration: 1

 Score =  238 bits (606), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 119/142 (83%), Gaps = 4/142 (2%)
Query: 50  NTRVFSAPETL----AGXXXXXXXXXXPETLSVSSGADQMAPKQKIRIKLRSYWVPLIED 105
           N RVF+APE L     G             L + + +DQMAPKQKIRIKLRSYWVPLIED
Sbjct: 56  NVRVFAAPEVLESQETGPESYVEEGSETSALGIGADSDQMAPKQKIRIKLRSYWVPLIED 115
Query: 106 SCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPT 165
           SCKQIMDAARTTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTHQRLIDILYPT
Sbjct: 116 SCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTHQRLIDILYPT 175
Query: 166 AQTIDSLMQLDLPAGVDVEVKL 187
           AQTIDSLMQLDLPAGVDVEVKL
Sbjct: 176 AQTIDSLMQLDLPAGVDVEVKL 197
>pdb|1P6G|J Chain J, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 103 Back     alignment and structure
>pdb|3UXS|J Chain J, The Structure Of Thermorubin In Complex With The 70s Ribosome From Thermus Thermophilus. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 105 Back     alignment and structure
>pdb|3FIH|J Chain J, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 98 Back     alignment and structure
>pdb|1I94|J Chain J, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 104 Back     alignment and structure
>pdb|1FJG|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 105 Back     alignment and structure
>pdb|1PNS|J Chain J, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 98 Back     alignment and structure
>pdb|3FIC|J Chain J, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 99 Back     alignment and structure
>pdb|2GY9|J Chain J, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 96 Back     alignment and structure
>pdb|3D3B|J Chain J, Structural And Functional Analysis Of The E. Coli Nusb-s10 Transcription Antitermination Complex. Length = 87 Back     alignment and structure
>pdb|3D3C|J Chain J, Structural And Functional Analysis Of The E. Coli Nusb-S10 Transcription Antitermination Complex. Length = 87 Back     alignment and structure
>pdb|3R2D|J Chain J, Crystal Structure Of Antitermination Factors Nusb And Nuse In Complex With Dsrna Length = 84 Back     alignment and structure
>pdb|3R2C|J Chain J, Crystal Structure Of Antitermination Factors Nusb And Nuse In Complex With Boxa Rna Length = 83 Back     alignment and structure
>pdb|3J20|L Chain L, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 102 Back     alignment and structure
>pdb|2ZKQ|JJ Chain j, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 119 Back     alignment and structure
>pdb|1S1H|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 100 Back     alignment and structure
>pdb|3JYV|J Chain J, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 96 Back     alignment and structure
>pdb|3IZ6|J Chain J, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 128 Back     alignment and structure
>pdb|3IZB|J Chain J, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 121 Back     alignment and structure
>pdb|2XZM|J Chain J, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 120 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
2vqe_J105 30S ribosomal protein S10, 30S ribosomal protein S 2e-50
3bbn_J197 Ribosomal protein S10; small ribosomal subunit, sp 2e-48
3r8n_J98 30S ribosomal protein S10; protein biosynthesis, R 3e-48
2zkq_j119 40S ribosomal protein S20E; protein-RNA complex, 4 6e-42
3iz6_J128 40S ribosomal protein S20 (S10P); eukaryotic ribos 2e-40
3u5c_U121 40S ribosomal protein S20; translation, ribosome, 3e-40
2xzm_J120 Ribosomal protein S10 containing protein; ribosome 2e-38
3d3c_J87 30S ribosomal protein S10, N utilization substance 6e-34
3r2c_J83 Protein NUSE, 30S ribosomal protein S10; cross spe 1e-33
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ... Length = 105 Back     alignment and structure
 Score =  157 bits (398), Expect = 2e-50
 Identities = 49/99 (49%), Positives = 72/99 (72%)

Query: 89  QKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF 148
            KIRIKLR +    ++ S ++I++AAR + A+  GP+PLPT+ R + V++ P  HKD+R 
Sbjct: 2   PKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSRE 61

Query: 149 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 187
           HFE+RTH RL+DI+ P  +TI+ LM LDLP GV++E+K 
Sbjct: 62  HFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKT 100
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 197 Back     alignment and structure
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 119 Back     alignment and structure
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 128 Back     alignment and structure
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J* Length = 121 Back     alignment and structure
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J Length = 120 Back     alignment and structure
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J Length = 87 Back     alignment and structure
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J Length = 83 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
3bbn_J197 Ribosomal protein S10; small ribosomal subunit, sp 100.0
3j20_L102 30S ribosomal protein S10P; archaea, archaeal, KIN 100.0
3r8n_J98 30S ribosomal protein S10; protein biosynthesis, R 100.0
3u5c_U121 40S ribosomal protein S20; translation, ribosome, 100.0
2xzm_J120 Ribosomal protein S10 containing protein; ribosome 100.0
2vqe_J105 30S ribosomal protein S10, 30S ribosomal protein S 100.0
3iz6_J128 40S ribosomal protein S20 (S10P); eukaryotic ribos 100.0
2zkq_j119 40S ribosomal protein S20E; protein-RNA complex, 4 100.0
3d3c_J87 30S ribosomal protein S10, N utilization substance 99.91
3r2c_J83 Protein NUSE, 30S ribosomal protein S10; cross spe 99.89
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
Probab=100.00  E-value=1.2e-49  Score=331.60  Aligned_cols=187  Identities=68%  Similarity=0.945  Sum_probs=97.7

Q ss_pred             Cccccccee-ecCCcccCCC-CCCCCCCceeecccccCCCCcccc-CCCCccce---eeeeCCccCCCCCCC-c---ccc
Q 041275            1 MATFSLSAA-ISPSLTVPIS-SNSKCPVFSVSFPSKNYAGNTLKL-EPLSTTNT---RVFSAPETLAGSESS-A---VEA   70 (187)
Q Consensus         1 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~-~---~~~   70 (187)
                      ||++|++++ ++|+|.++++ .+++++++.||+.+++|+-...-- .+++.+.+   +||++||+|+++... +   -+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   80 (197)
T 3bbn_J            1 MATSSLSTIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRVFAAPEVLESQETGPESYVEEG   80 (197)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcceeeeeeecccccccCCccccccccccccchhccCCchhhhccCCCcccccccccEEEechhHhhccCCCCcceEecc
Confidence            899999998 6799977764 678999999999998843222110 24556666   899999999986321 0   111


Q ss_pred             ccceeeeecCCccccCcccEEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcCCCceeeE
Q 041275           71 EVPETLSVSSGADQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHF  150 (187)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~KKSrEqF  150 (187)
                      .+.++++++.|+|.|++.++|||+|+|||++.||++|++|+++|+.+|++++||++||||+++||+|||||+|||+||||
T Consensus        81 ~~~~~~~~~~e~~~m~~~~kIRI~LkS~D~k~Ld~~~~~Iv~~Ak~tg~~V~GPIpLPTK~~r~TVLRSPHv~KKSREQF  160 (197)
T 3bbn_J           81 SETSALGIGADSDQMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHF  160 (197)
T ss_dssp             ------------------CCSEEEEEESCHHHHHHHTTHHHHTTTTTSSCEEEEEECCCEEEEECCCCSSSSCCSSCCCE
T ss_pred             ccccceeecCcccccccCcEEEEEEEeCCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCeeEEEEEeeCCCCCCCcceeE
Confidence            24468999999999976789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEEEEEEECCCHHHHHHHHccCCCCCceEEEEC
Q 041275          151 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL  187 (187)
Q Consensus       151 EiRtHKR~I~I~~~t~~~i~~liq~~lP~GV~IeVkl  187 (187)
                      |||+|||+|+|++.+++++++|+++++|+||+|||++
T Consensus       161 EmRtHKRlIdI~~~t~~tvd~lm~l~LP~GV~IEIkl  197 (197)
T 3bbn_J          161 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL  197 (197)
T ss_dssp             EEEEEEEEEEESSCCHHHHHHHTTCCCCSSCEEEEEC
T ss_pred             EEEEEEEEEEEECCCHHHHHHHHcCcCCCCCEEEEeC
Confidence            9999999999999999999999999999999999986
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J* Back     alignment and structure
>2xzm_J Ribosomal protein S10 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_J Back     alignment and structure
>2vqe_J 30S ribosomal protein S10, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.58.15.1 PDB: 1gix_M* 1hnw_J* 1hnx_J* 1hnz_J* 1hr0_J 1ibk_J* 1ibl_J* 1ibm_J 1jgo_M* 1jgp_M* 1jgq_M* 1ml5_M* 1xmo_J* 1xmq_J* 1xnq_J* 1xnr_J* 1yl4_M 2b64_J* 2b9m_J* 2b9o_J* ... Back     alignment and structure
>3iz6_J 40S ribosomal protein S20 (S10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>2zkq_j 40S ribosomal protein S20E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J Back     alignment and structure
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 187
d2uubj198 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus 2e-46
d2qalj198 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escheri 8e-46
>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]} Length = 98 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S10
family: Ribosomal protein S10
domain: Ribosomal protein S10
species: Thermus thermophilus [TaxId: 274]

 Score =  145 bits (368), Expect = 2e-46
 Identities = 49/97 (50%), Positives = 72/97 (74%)

Query: 90  KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 149
           KIRIKLR +    ++ S ++I++AAR + A+  GP+PLPT+ R + V++ P  HKD+R H
Sbjct: 1   KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSREH 60

Query: 150 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVK 186
           FE+RTH RL+DI+ P  +TI+ LM LDLP GV++E+K
Sbjct: 61  FELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIK 97
>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query187
d2qalj198 Ribosomal protein S10 {Escherichia coli [TaxId: 56 100.0
d2uubj198 Ribosomal protein S10 {Thermus thermophilus [TaxId 100.0
>d2qalj1 d.58.15.1 (J:5-102) Ribosomal protein S10 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Ribosomal protein S10
family: Ribosomal protein S10
domain: Ribosomal protein S10
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-37  Score=231.80  Aligned_cols=98  Identities=52%  Similarity=0.882  Sum_probs=96.1

Q ss_pred             EEEEEEEecChhhHHHHHHHHHHHHHHhCCeeeccccCCCcceEEEEeecCCcCCCceeeEEEEEEEEEEEEECCCHHHH
Q 041275           90 KIRIKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTI  169 (187)
Q Consensus        90 kIrIkLkS~d~~~Le~~~~~I~~~ak~~~i~v~GPipLPTKk~r~TVLRSPHV~KKSrEqFEiRtHKR~I~I~~~t~~~i  169 (187)
                      ||||+|+|||+..||.+|++|+++|+.+|++++||+||||++++||+|||||+||+||||||+|+|+|+|+|++++++++
T Consensus         1 kirI~L~s~d~~~Ld~~~~~i~~~a~~~g~~v~GPiplPtk~~~~tvlrSPh~~kksreqfE~r~hkRli~i~~~~~~~~   80 (98)
T d2qalj1           1 RIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTV   80 (98)
T ss_dssp             CBEECEEESSHHHHHHHHHHHHHHHTTSSCCCCBCCCCCCEEEEEEECCSSSSCTTCCEEEEEEEEEECBCBSSCCHHHH
T ss_pred             CEEEEEEeecHHHHHHHHHHHHHHHHHcCCeEECCCCCCcEEEEEEEEecCCCCCchhhheeeeeeEEEEEEECCCHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCCCCCceEEEEC
Q 041275          170 DSLMQLDLPAGVDVEVKL  187 (187)
Q Consensus       170 ~~liq~~lP~GV~IeVkl  187 (187)
                      +.|+++++|+||+|+|+|
T Consensus        81 ~~l~~~~lp~GV~i~i~l   98 (98)
T d2qalj1          81 DALMRLDLAAGVDVQISL   98 (98)
T ss_dssp             HHTTTSCCCSSCCCCEEC
T ss_pred             HHHhcCCCCCCcEEEEEC
Confidence            999999999999999986
>d2uubj1 d.58.15.1 (J:3-100) Ribosomal protein S10 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure