Citrus Sinensis ID: 041288

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800----
MQLSARTRRKVVPATANGGDSADKLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSLRDCVYALQEEDDDENGLSNGVESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSDRLFGTFGSRGAKQNPKKKSLDALIKRLRDVS
cccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccc
ccccccccccccccccccHcHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccHcccccccccccccccccccHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHEHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHHccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccHHHHccHHHcccccccccHHHHHHHHHHHHccHHccccHHcccccccHHHHHHHHHHHHHHHHcc
mqlsartrrkvvpatanggdsadKLDQLLLSSaigngedlgPFVRkafasgkpeTLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSranhhlsnnnfyMALKCTDAlesefsdkapssTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSLRDCVYALqeedddenglsngvesdsnggagllgfdltplyrAYHIHQTLGLEDRFKQYYFEnrklqltsdfqvssmtpfleSHQTFFAQIAGFFIVEDRILrtgggliskieVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFqiqtsdivpafpyvapfsstvpdccRIVRSFIEDSVsfmsygghlEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHaaqlsgiplrmaersrrqfpltkARDAAEEMLSGLLKNKVDGFMSLIENVNwmadeplqngneYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGavygdsvkrfninaiMGIDVDIRLLESFAdnlaplftdgdANQLKTALAESRQLVNLLLsnhpenflnpvirersynaldhrkvvtiseklrdpsdrlfgtfgsrgakqnpkkKSLDALIKRLRDVS
mqlsartrrkvvpatanggdsadkLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSalsdsnsklqSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFsdkapsstlkrmlekktpsirsyierkvnkefGDWLVEIRVVSRNLGQLaigqassarqreEDLRIKQRqaeeqsrlslRDCVYALQEedddenglsngvESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLsgiplrmaersrrQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETivgavygdsvkrFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHrkvvtiseklrdpsdrlfgtfgsrgakqnpkkksldalikrlrdvs
MQLSARTRRKVVPATANGGDSADKLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFIlavddlrsllsdvdslksalsdsNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSLRDCVYALQEEDDDENGLSNGVESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSDRLFGTFGSRGAKQNPKKKSLDALIKRLRDVS
***************************************LGPFVRKAF**********************IEEVCKAHYQDFILAVDDLRSLLSD******************AGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDAL************************RSYIERKVNKEFGDWLVEIRVVSRNLGQLAI********************************************************AGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLR********************MLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTIS***************************************
*************************DQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSL********************************VEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSA*******************************************ESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAA*********************ARDAAEEMLSGLLKNKVDGFMSLIENVNWMADE****GNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFA***************KTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKL***************************LIKRLRDV*
*************ATANGGDSADKLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAI**************IKQRQAEEQSRLSLRDCVYALQEEDDDENGLSNGVESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSDRLFGTFGSR*********SLDALIKRLRDVS
******************GDSADKLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLRIKQRQA******SLRDCVYALQE*D*********V**DSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSDRLFGTFG***AKQNPKKKSLDALIKRLRDVS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQLSARTRRKVVPATANGGDSADKLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQxxxxxxxxxxxxxxxxxxxxxSRLSLRDCVYALQEEDDDENGLSNGVESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSDRLFGTFGSRGAKQNPKKKSLDALIKRLRDVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query804 2.2.26 [Sep-21-2011]
Q9LXX6790 Probable exocyst complex no no 0.966 0.983 0.490 0.0
E2R766803 Exocyst complex component no no 0.929 0.930 0.251 7e-67
Q8TAG9804 Exocyst complex component yes no 0.935 0.935 0.248 9e-67
A6H5Z3810 Exocyst complex component yes no 0.926 0.919 0.257 1e-66
Q9Y2D4811 Exocyst complex component no no 0.958 0.950 0.251 3e-66
O54923804 Exocyst complex component no no 0.916 0.916 0.252 6e-65
Q8R313802 Exocyst complex component no no 0.925 0.927 0.246 2e-62
Q9VDE6766 Exocyst complex component yes no 0.910 0.955 0.245 8e-58
Q18286817 Exocyst complex component yes no 0.922 0.908 0.226 2e-49
Q54B271025 Exocyst complex component yes no 0.924 0.724 0.218 4e-46
>sp|Q9LXX6|EXOC6_ARATH Probable exocyst complex component 6 OS=Arabidopsis thaliana GN=At3g56640 PE=3 SV=2 Back     alignment and function desciption
 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/810 (49%), Positives = 559/810 (69%), Gaps = 33/810 (4%)

Query: 3   LSARTRRKVVPATANGGDSADKLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQ 62
           + A+ +R++V  T NG    D    L+L++ IGNG+D+GP VR AF  G+PE L+  L+ 
Sbjct: 2   MEAKPKRRIV--TENGDTGED----LVLATLIGNGDDVGPLVRHAFEMGRPEPLVHQLKN 55

Query: 63  FSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLD 122
            +R KE+EIE++CK HY++FI+AVD+LR +L D + LKS L+  N +LQ V   LL  L+
Sbjct: 56  VARKKEAEIEDLCKTHYEEFIVAVDELRGVLVDAEELKSDLASDNFRLQEVGSALLVKLE 115

Query: 123 SYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAP 182
             +E+  + KN+  A+K    CV+ +ELC + N ++S   FY ALK  D +E  +    P
Sbjct: 116 ELLESYAVKKNVTEAIKMSKICVQALELCVKCNSYISEGQFYHALKTMDLIEKSYLKLIP 175

Query: 183 SSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLR 242
              LK ++E++ P I+++IE+KV  +F +WLV IR  S+N+GQ AIG  +SARQREE++ 
Sbjct: 176 LKVLKLVIERRIPVIKTHIEKKVCSQFNEWLVHIRSSSKNIGQTAIGLTASARQREEEML 235

Query: 243 IKQRQAEEQSRLSLRDCVYALQEEDDDENGLSNGVESDSNGGAGLLGFDLTPLYRAYHIH 302
            +QR+AEEQ+   L +  Y L  ED +++ +              L FDLTPLYRAYHIH
Sbjct: 236 ERQRRAEEQNTGGLGELAYTLDVEDSEQDSV--------------LKFDLTPLYRAYHIH 281

Query: 303 QTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTGGG 362
             LG+ +RF+ YY+ENR LQL SD Q++   PF+ES+QTF AQ+AG+FIVEDR++RT G 
Sbjct: 282 TILGVPERFRDYYYENRLLQLQSDLQITYTQPFVESYQTFLAQVAGYFIVEDRVIRTAGD 341

Query: 363 LISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALL 422
            +   +VE +W+ A+SK+ ++LE+QF+RM +  HLLL+KDYV+LLG TLR+YGY +  +L
Sbjct: 342 FLLADQVETMWETAISKIVAILENQFARMDSPTHLLLVKDYVTLLGTTLRQYGYEVGPVL 401

Query: 423 DVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVPAF 482
           D L K RDKYHELLL +CRKQI  A+  D ++QM++KKE +Y  NVLSF +QTSDI+PAF
Sbjct: 402 DALDKSRDKYHELLLEECRKQIVTAITEDTYQQMVIKKEADYENNVLSFNLQTSDIMPAF 461

Query: 483 PYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLKLI 542
            Y+APFSS VPD CRI+RS+I+ SV ++SYG +  FF V++KYLD++L +VL+E +L+ I
Sbjct: 462 TYIAPFSSMVPDVCRIIRSYIKGSVDYLSYGVNTNFFSVLRKYLDKILIDVLNEVILETI 521

Query: 543 NSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQFP----LTKARD 598
           +++  GVSQAMQ+AAN++ LE+A D+F RHAAQL GIP R  ER +        L  +RD
Sbjct: 522 SNNSIGVSQAMQIAANISFLEKASDYFLRHAAQLCGIPSRSVERPQASLAAKVVLKTSRD 581

Query: 599 AAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQ 658
           AA   L  ++  K+D FM L ENVNW  +E  Q  +EY+NEV+IYLET++STAQQILP  
Sbjct: 582 AAYLALLNVVNTKLDEFMKLTENVNWTTEEMPQGPHEYINEVVIYLETVMSTAQQILPMD 641

Query: 659 VLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFAD------NLAPL 712
            L +V    + HIS +IV     DS+KRFN NA+  I+ D+R++E+FAD       L  +
Sbjct: 642 ALYKVGVGAIEHISNSIVSTFLSDSIKRFNANAVSAINHDLRVIENFADERYHSSGLNEI 701

Query: 713 FTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPS 772
           + +G     ++ L E+RQL+NLL S+ PENF+NPVIRER+YN LD++KV TI EK +D +
Sbjct: 702 YKEG---SFRSYLVEARQLINLLSSSQPENFMNPVIRERNYNTLDYKKVATICEKFKDSA 758

Query: 773 DRLFGTFGSRGAKQNPKKKSLDALIKRLRD 802
           D +FG+  +R  K   KKKS+D L KRL++
Sbjct: 759 DGIFGSLANRNTKLTAKKKSMDMLKKRLKE 788
Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|E2R766|EXOC6_CANFA Exocyst complex component 6 OS=Canis familiaris GN=EXOC6 PE=3 SV=1 Back     alignment and function description
>sp|Q8TAG9|EXOC6_HUMAN Exocyst complex component 6 OS=Homo sapiens GN=EXOC6 PE=1 SV=3 Back     alignment and function description
>sp|A6H5Z3|EXC6B_MOUSE Exocyst complex component 6B OS=Mus musculus GN=Exoc6b PE=2 SV=1 Back     alignment and function description
>sp|Q9Y2D4|EXC6B_HUMAN Exocyst complex component 6B OS=Homo sapiens GN=EXOC6B PE=1 SV=3 Back     alignment and function description
>sp|O54923|EXOC6_RAT Exocyst complex component 6 OS=Rattus norvegicus GN=Exoc6 PE=2 SV=2 Back     alignment and function description
>sp|Q8R313|EXOC6_MOUSE Exocyst complex component 6 OS=Mus musculus GN=Exoc6 PE=1 SV=2 Back     alignment and function description
>sp|Q9VDE6|EXOC6_DROME Exocyst complex component 6 OS=Drosophila melanogaster GN=sec15 PE=1 SV=1 Back     alignment and function description
>sp|Q18286|EXOC6_CAEEL Exocyst complex component 6 OS=Caenorhabditis elegans GN=sec-15 PE=3 SV=4 Back     alignment and function description
>sp|Q54B27|EXOC6_DICDI Exocyst complex component 6 OS=Dictyostelium discoideum GN=exoc6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query804
224068356803 predicted protein [Populus trichocarpa] 0.995 0.996 0.873 0.0
255564216805 sec15, putative [Ricinus communis] gi|22 0.993 0.992 0.868 0.0
224128450806 predicted protein [Populus trichocarpa] 0.997 0.995 0.859 0.0
225437418802 PREDICTED: probable exocyst complex comp 0.995 0.997 0.850 0.0
449436475805 PREDICTED: probable exocyst complex comp 0.996 0.995 0.835 0.0
297743908768 unnamed protein product [Vitis vinifera] 0.952 0.997 0.825 0.0
356552594781 PREDICTED: probable exocyst complex comp 0.971 1.0 0.812 0.0
334186300787 exocyst complex component sec15B [Arabid 0.975 0.996 0.768 0.0
3193284771 T14P8.16 [Arabidopsis thaliana] gi|72689 0.955 0.996 0.753 0.0
297814075771 hypothetical protein ARALYDRAFT_490336 [ 0.955 0.996 0.749 0.0
>gi|224068356|ref|XP_002302721.1| predicted protein [Populus trichocarpa] gi|222844447|gb|EEE81994.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1430 bits (3701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 702/804 (87%), Positives = 752/804 (93%), Gaps = 4/804 (0%)

Query: 3   LSARTRRKVVPATANGGDSADKLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQ 62
           LSA+ RRK+ PA  +  +SADK DQLLLS+AI NGEDLGP VRKAFASGKPETLL +LR 
Sbjct: 2   LSAKVRRKIAPANGDTDNSADKQDQLLLSAAIYNGEDLGPSVRKAFASGKPETLLHNLRH 61

Query: 63  FSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLASLD 122
           F+RSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLL SLD
Sbjct: 62  FARSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKSALSDSNSKLQSVAGPLLTSLD 121

Query: 123 SYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFSDKAP 182
           SY+EAQT+S N++LAL  I SC+KL+ELCSR+N+HLS  NFYMALKC D++E++F DK P
Sbjct: 122 SYLEAQTVSHNVNLALSLIFSCIKLLELCSRSNYHLSRGNFYMALKCVDSIETDFLDKTP 181

Query: 183 SSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREEDLR 242
           SSTLKRMLEKK P IRS+IERKV+KEFGDWLVEIRVVSRNLGQLAIGQAS+ARQREEDLR
Sbjct: 182 SSTLKRMLEKKIPDIRSHIERKVSKEFGDWLVEIRVVSRNLGQLAIGQASAARQREEDLR 241

Query: 243 IKQRQAEEQSRLSLRDCVYALQEEDDDENGLSNGV--ESDSNGGAGLLGFDLTPLYRAYH 300
           IKQRQAEEQSRLSLRDCVYALQEE++ E+GLS GV  +  + GG GLLGFDLTPLYRAYH
Sbjct: 242 IKQRQAEEQSRLSLRDCVYALQEEEE-EDGLS-GVMGDDGNGGGNGLLGFDLTPLYRAYH 299

Query: 301 IHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDRILRTG 360
           IHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVED+ILRTG
Sbjct: 300 IHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDQILRTG 359

Query: 361 GGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDA 420
           G LIS+++VENLW+ AVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYP+DA
Sbjct: 360 GDLISRMKVENLWETAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRYGYPVDA 419

Query: 421 LLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVP 480
           LLDVLSKHRDKYHELLLSDCRKQI EALAAD FEQMLMKKEYEYSMNVLSFQ+QTSDIVP
Sbjct: 420 LLDVLSKHRDKYHELLLSDCRKQIAEALAADTFEQMLMKKEYEYSMNVLSFQLQTSDIVP 479

Query: 481 AFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHLEFFDVVKKYLDRLLGEVLDEALLK 540
           AFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGG LEFFDVVKKYLDR L EVLDEALLK
Sbjct: 480 AFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGQLEFFDVVKKYLDRFLSEVLDEALLK 539

Query: 541 LINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQFPLTKARDAA 600
           LI++SVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAER RRQFPL  ARDAA
Sbjct: 540 LISTSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERGRRQFPLNNARDAA 599

Query: 601 EEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVL 660
           EEMLSGLLK KVDGFM+LIENVNWMADEP Q+GNEYVNEV+IYLETLVSTAQQILPA VL
Sbjct: 600 EEMLSGLLKQKVDGFMTLIENVNWMADEPTQSGNEYVNEVMIYLETLVSTAQQILPAPVL 659

Query: 661 RRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQ 720
           +RVLQDVLSHISE IVGA+ GDSVKRFN+NAIMGIDVDIRLLESFADN A LF++GDANQ
Sbjct: 660 KRVLQDVLSHISEMIVGALLGDSVKRFNVNAIMGIDVDIRLLESFADNQAALFSEGDANQ 719

Query: 721 LKTALAESRQLVNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSDRLFGTFG 780
           LKTALAE+RQL+NLLLSNHPENFLNPVIR RSYN LD+RKV+TISEKLRDPSDRLFGTFG
Sbjct: 720 LKTALAEARQLINLLLSNHPENFLNPVIRGRSYNTLDYRKVMTISEKLRDPSDRLFGTFG 779

Query: 781 SRGAKQNPKKKSLDALIKRLRDVS 804
           SR A+QNPKKKSLD LIKRL+DVS
Sbjct: 780 SRAARQNPKKKSLDTLIKRLKDVS 803

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564216|ref|XP_002523105.1| sec15, putative [Ricinus communis] gi|223537667|gb|EEF39290.1| sec15, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224128450|ref|XP_002320334.1| predicted protein [Populus trichocarpa] gi|222861107|gb|EEE98649.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225437418|ref|XP_002271146.1| PREDICTED: probable exocyst complex component 6 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436475|ref|XP_004136018.1| PREDICTED: probable exocyst complex component 6-like [Cucumis sativus] gi|449521233|ref|XP_004167634.1| PREDICTED: probable exocyst complex component 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297743908|emb|CBI36878.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552594|ref|XP_003544650.1| PREDICTED: probable exocyst complex component 6-like [Glycine max] Back     alignment and taxonomy information
>gi|334186300|ref|NP_567229.2| exocyst complex component sec15B [Arabidopsis thaliana] gi|332656758|gb|AEE82158.1| exocyst complex component sec15B [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3193284|gb|AAC19268.1| T14P8.16 [Arabidopsis thaliana] gi|7268995|emb|CAB80728.1| AT4g02350 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297814075|ref|XP_002874921.1| hypothetical protein ARALYDRAFT_490336 [Arabidopsis lyrata subsp. lyrata] gi|297320758|gb|EFH51180.1| hypothetical protein ARALYDRAFT_490336 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query804
ZFIN|ZDB-GENE-060929-132804 exoc6b "exocyst complex compon 0.934 0.934 0.259 2.4e-67
UNIPROTKB|F1MIR2811 EXOC6B "Uncharacterized protei 0.970 0.961 0.244 4e-67
UNIPROTKB|E2R766803 EXOC6 "Exocyst complex compone 0.935 0.936 0.247 1.1e-66
UNIPROTKB|F1PSU4811 EXOC6B "Uncharacterized protei 0.967 0.959 0.250 1.3e-66
MGI|MGI:1923164810 Exoc6b "exocyst complex compon 0.936 0.929 0.25 1.3e-66
UNIPROTKB|F1N005803 EXOC6 "Uncharacterized protein 0.925 0.926 0.249 1.7e-66
UNIPROTKB|Q8TAG9804 EXOC6 "Exocyst complex compone 0.935 0.935 0.248 1.7e-66
UNIPROTKB|Q9Y2D4811 EXOC6B "Exocyst complex compon 0.968 0.960 0.245 3.6e-66
UNIPROTKB|E9PHI3799 EXOC6 "Exocyst complex compone 0.905 0.911 0.251 7.4e-66
UNIPROTKB|F2Z2Q3820 EXOC6 "Exocyst complex compone 0.905 0.887 0.251 7.4e-66
ZFIN|ZDB-GENE-060929-132 exoc6b "exocyst complex component 6B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 204/787 (25%), Positives = 364/787 (46%)

Query:    40 LGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFIXXXXXXXXXXXXXXXX 99
             +GP +R  +   +    ++ L    R+ + EIE++C  H+Q F+                
Sbjct:    25 IGPTLRSVYDGQEHGLFMEKLEGRIRNHDREIEKMCNHHFQGFVDSITELLKVRGEAQKL 84

Query:   100 XXXXXXXNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLS 159
                    N KLQ+    LL S++   + +   +NI   +  +  C+ ++E+ S+    + 
Sbjct:    85 KGQVTETNQKLQNDGKELLTSMNELRQCRVQQRNIATTIDKLTHCLPVLEMYSKLQEQMR 144

Query:   160 NNNFYMALKCTDALESEFSDKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVV 219
                +Y AL+  + LE     +A S     ++ +  P +R++I      +  D+L  IR  
Sbjct:   145 AKRYYPALRTLEQLEESCLPQAGSYRFCTIMAENIPRLRTHIRDVSMSDLKDFLESIRKH 204

Query:   220 SRNLGQLAIGQASSARQREEDLRIKQRQAEEQSRLSLRDCVYALQEED--------DDEN 271
             S  +G+ A+ QA     R+  +  +QR A   S   +R   Y   E D        + ++
Sbjct:   205 SDKIGETAMKQAQVQIARDNAVTSQQRSA---SGRRIRKEGYGSTEVDRTGNNPFSEQDS 261

Query:   272 GL---SNGVESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQ 328
             G+    +  E +  G   L+  D +P+YR  HI+  LG  D F+ YY + R+ Q     Q
Sbjct:   262 GILDVDDEQEEEVPGAHDLV--DFSPVYRCLHIYTVLGARDTFENYYRKQRRKQARLVLQ 319

Query:   329 V-SSMTPFLESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQ 387
               S+M   LE ++ +F QI GFF+VED IL T  GL+++  VE LW+ A+SK  + L   
Sbjct:   320 PHSNMHETLEGYRRYFNQIVGFFVVEDHILHTTQGLVNRAYVEELWELALSKTIAALRTH 379

Query:   388 FSRMQTANHLLLIKDYVSLLGVTLRRYGYPIDALLDVLSKHRDKYHELLLSDCRKQITEA 447
              S     + +L +K+ + L   TL+ YG+P++ L D+L + RD+Y E+LL    +   + 
Sbjct:   380 SSYCTDPDLVLDLKNLIVLFADTLQGYGFPVNQLFDMLLEMRDQYGEILLKKWSQSFRQI 439

Query:   448 LAADKFEQM--LMKKEYEYSMNVLSFQIQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIED 505
             L  D +  +  +  +EY+       FQ    D +P FP   PFS  VP     ++ F E 
Sbjct:   440 LDQDNYSPIPVVSPEEYQRITGQFPFQDPELDKMP-FPKKLPFSEFVPKVYSQLKEF-EF 497

Query:   506 SVSFMSYGG--HL---EFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMA 560
               + + Y    HL   E  D+++K  + LL   L   L   I     G+++ +Q+  N  
Sbjct:   498 IYACLKYSEDLHLSSTEIDDMIRKSTNLLLTRTLSHCLQYAIKKKNVGLAELVQIIINTT 557

Query:   561 VLERACDFFFRHAAQLSGIPLRMAERSRRQFPLT--KARDAAEEMLSGLLKNKVDGFMSL 618
              LE++C +     + ++ +P      ++     T   AR AAEE +   L  K+D F+ L
Sbjct:   558 HLEQSCHYLEEFISNITNVPPDTINATKLYGTSTFKDARHAAEEEIYTNLNQKIDQFLQL 617

Query:   619 IENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGA 678
              +  +W A +     ++Y++++I +L +  +     LP +V +        H+S +++  
Sbjct:   618 AD-YDWTAAQGGGQASDYLSDLIAFLCSTFAVFTH-LPGKVAQTACMSACKHLSTSLLQL 675

Query:   679 VYGDSVKRFNINAIMGIDVDIRLLESFAD-NLAPLFTDGDANQLKTALAESRQLVNLLLS 737
             +    V++ ++ A+   +VD++  E FA     P F  GD   L  A  + RQL++L   
Sbjct:   676 LLEADVRQVSMGALQQFNVDVKECERFARAGPVPGF-QGDT--LLLAFIDLRQLLDLFTQ 732

Query:   738 NHPENFLNPVIRER-SYNALDHRKVVTISEKLRDPSDRLFGTFGSRGAKQNPKKKSLDAL 796
                  +L    R    Y  ++    + + EK++D S R    F      +  K+K +D +
Sbjct:   733 WDWSTYLADYGRPTCKYLRVNPHTALALLEKMKDTS-RKNNMFAQFRKNERDKQKLIDTV 791

Query:   797 IKRLRDV 803
             +K+LR++
Sbjct:   792 VKQLRNL 798
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0000145 "exocyst" evidence=IEA
GO:0003674 "molecular_function" evidence=ND
UNIPROTKB|F1MIR2 EXOC6B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R766 EXOC6 "Exocyst complex component 6" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSU4 EXOC6B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1923164 Exoc6b "exocyst complex component 6B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N005 EXOC6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TAG9 EXOC6 "Exocyst complex component 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y2D4 EXOC6B "Exocyst complex component 6B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PHI3 EXOC6 "Exocyst complex component 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z2Q3 EXOC6 "Exocyst complex component 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II001756
hypothetical protein (803 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query804
pfam04091311 pfam04091, Sec15, Exocyst complex subunit Sec15-li 8e-99
>gnl|CDD|217888 pfam04091, Sec15, Exocyst complex subunit Sec15-like Back     alignment and domain information 
 Score =  308 bits (792), Expect = 8e-99
 Identities = 109/314 (34%), Positives = 168/314 (53%), Gaps = 8/314 (2%)

Query: 461 EYEYSMNVLSFQ-IQTSDIVPAFPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGG--HLE 517
           EYE  + V  ++    S  VP FP   PFS   P CC  +RSFI     F+        E
Sbjct: 1   EYEKVLKVCWYKPEDPSLEVPPFPKTFPFSPMYPLCCTQIRSFINQFYKFLDDLYQEPTE 60

Query: 518 FFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLS 577
             ++V+K LDRLL +V+++ LL+ ++S+   + Q +Q+  N+   E+ACD   +  AQL 
Sbjct: 61  INEIVRKSLDRLLIDVVNDCLLERLDSTSLNLEQIVQILINLEYFEKACDELEKLLAQLR 120

Query: 578 GIPLRMAERSR--RQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNE 635
            IP  +              AR AAE+ +  L+ +K+D F+ L    +W   EP    ++
Sbjct: 121 NIPQSIGGPISLAATKKFKSARKAAEKRIFELVNSKIDDFLEL-AEYDWTPTEPPDEPSD 179

Query: 636 YVNEVIIYLETLVSTAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGI 695
           Y+ ++  +LET+ S+    LP ++   V      HISE+I+  +  D VKR N NA+   
Sbjct: 180 YIQDLATFLETIFSSTLLNLPYEIKTLVYFRAFDHISESILDLLLSDEVKRINTNAVANF 239

Query: 696 DVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNLLLSNHPENFLNPVIRERSYNA 755
           D+D++ LESFAD+L           L++   E RQL++LLLS++PE F++P IR R YN 
Sbjct: 240 DLDVKYLESFADSL--PVEGNGEGSLRSTFDELRQLIDLLLSDNPEEFMDPSIRMRKYNR 297

Query: 756 LDHRKVVTISEKLR 769
           +D  K   + EKL+
Sbjct: 298 VDPEKAAILLEKLQ 311

Length = 311

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 804
KOG2176800 consensus Exocyst complex, subunit SEC15 [Intracel 100.0
PF04091311 Sec15: Exocyst complex subunit Sec15-like ; InterP 100.0
PF10191766 COG7: Golgi complex component 7 (COG7); InterPro: 99.38
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 98.47
PF10475291 DUF2450: Protein of unknown function N-terminal do 98.37
PF04437494 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 98.25
PF15469182 Sec5: Exocyst complex component Sec5 98.23
PF04048142 Sec8_exocyst: Sec8 exocyst complex component speci 97.98
PF10392132 COG5: Golgi transport complex subunit 5; InterPro: 97.88
PF06148133 COG2: COG (conserved oligomeric Golgi) complex com 97.62
KOG2347934 consensus Sec5 subunit of exocyst complex [Intrace 97.31
KOG3691 982 consensus Exocyst complex subunit Sec8 [Intracellu 97.13
KOG2307705 consensus Low density lipoprotein receptor [Intrac 97.11
PF0870087 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te 96.97
PF10474234 DUF2451: Protein of unknown function C-terminus (D 96.83
KOG0412773 consensus Golgi transport complex COD1 protein [In 96.79
PF04124338 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 96.66
PF04100383 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007 96.63
PF07393710 Sec10: Exocyst complex component Sec10; InterPro: 96.18
PF06046566 Sec6: Exocyst complex component Sec6; InterPro: IP 95.37
KOG2176800 consensus Exocyst complex, subunit SEC15 [Intracel 95.27
KOG2033863 consensus Low density lipoprotein B-like protein [ 95.0
PF01843105 DIL: DIL domain; InterPro: IPR018444 Dilute encode 94.46
PF12022125 DUF3510: Domain of unknown function (DUF3510); Int 91.77
KOG2211797 consensus Predicted Golgi transport complex 1 prot 90.27
PF06419618 COG6: Conserved oligomeric complex COG6; InterPro: 84.57
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-166  Score=1401.34  Aligned_cols=779  Identities=41%  Similarity=0.611  Sum_probs=723.7

Q ss_pred             CChhhhhhHHHhhcccCCCCchhHHHHHHHhcCChhHHHHHHHHHHHhhHHHHHHHhhhhhhHHHHHHHHHHhhhhhHHH
Q 041288           19 GDSADKLDQLLLSSAIGNGEDLGPFVRKAFASGKPETLLQHLRQFSRSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDS   98 (804)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~d~l~piik~~~~~~~~~~ll~~L~~~i~~ke~eIE~iC~~~yq~Fi~sv~~L~~Vr~~~~~   98 (804)
                      +|...-..-+.+...+.++|.|||++|.+++.|+++.|+++|+++|+.||.|||+||+.|||||++||+||++||.++.+
T Consensus        12 ~d~~~~~eril~~~estDtd~~gP~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~   91 (800)
T KOG2176|consen   12 LDTAEEHERILLEIESTDTDDWGPTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQK   91 (800)
T ss_pred             CcchHHHHHHHHHHhccchhhhhhHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            55555666777888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHhhHHHHHhhhc
Q 041288           99 LKSALSDSNSKLQSVAGPLLASLDSYVEAQTISKNIDLALKSIVSCVKLMELCSRANHHLSNNNFYMALKCTDALESEFS  178 (804)
Q Consensus        99 L~~~l~~~n~~lq~s~~~L~~kk~~L~~~r~v~~NI~eai~~L~~cl~VLel~~k~~e~i~~kkyy~ALktLd~Le~~~L  178 (804)
                      |++++++.|..||++|++|+.++++|+++|.+++||++|+++++.|+||||+|+||+++|++|+||+||||||.||++||
T Consensus        92 Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~yL  171 (800)
T KOG2176|consen   92 LKSQVSDTNRRLQESGKELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVYL  171 (800)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccc
Q 041288          179 DKAPSSTLKRMLEKKTPSIRSYIERKVNKEFGDWLVEIRVVSRNLGQLAIGQASSARQREED-LRIKQRQAEEQSRLSLR  257 (804)
Q Consensus       179 ~~v~~~~f~~~i~~sIP~lr~~Ik~~~~~~l~~WL~~IR~~s~~IG~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  257 (804)
                      |.++.|.|+.+|+.+||.+|+.|+++|++++++||++||++|++||+.|++++++.|+||++ ...+++..+.++..++.
T Consensus       172 ~~~~~~~~~~~i~~~Ip~ik~~i~~~~~~~~~e~L~~irk~s~~iGq~ai~~~~~ar~r~~~~~~~~~~~~e~~~~~~l~  251 (800)
T KOG2176|consen  172 PRVSNFRFLIVIQNRIPFIKEVIKSKSMSDFREWLENIRKKSPKIGQTAIQQAKEARQRWEEEKFNKQIEAEEQSTGSLA  251 (800)
T ss_pred             HhcccchhhHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccchHHHhhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999984 44444455555566665


Q ss_pred             ccccccccccccccCCCCCC--CCCCCCCCCccccCchhHHHHHHHHHhcCchHHHHHHHHHhhHhhhhccccCCCCcch
Q 041288          258 DCVYALQEEDDDENGLSNGV--ESDSNGGAGLLGFDLTPLYRAYHIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPF  335 (804)
Q Consensus       258 ~~~~~l~~~~~~e~~l~~~~--~~~~~~~~~~~~iDf~Ply~cihI~~~Lg~~e~F~~yY~~~Rr~Q~~l~l~~~~~~~~  335 (804)
                      ...+.+..+++++.+ +..+  +.+..+ -+.+.|||+|+|||+|||..||.++.|+.||++||+.|+.+++++|.+...
T Consensus       252 ~l~~~~~~e~d~~~~-s~~~~~~~~~~~-~~~~~~d~~plyr~~hi~~~Lg~~~~f~~~y~~nr~~q~~~~~q~~~t~~~  329 (800)
T KOG2176|consen  252 KLAYGLEFEEDDEHD-SIMIFQDLNELS-GAIDKFDFEPLYRCLHIHSVLGLRERFRAYYQMNRRLQADLVLQPPFTQLD  329 (800)
T ss_pred             HHhcccccccccccc-cchhccCccccc-chheeecccHHHHHHHHHHHHhhHHHHHHHHHHhHHHhhhcccCCCcchhh
Confidence            556555555444322 1000  111111 167899999999999999999999999999999999999999999876555


Q ss_pred             -HHHHHHHHHHhhhHHHhhHHHHhhcCCCcchhhHHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHhhhC
Q 041288          336 -LESHQTFFAQIAGFFIVEDRILRTGGGLISKIEVENLWDAAVSKMCSVLEDQFSRMQTANHLLLIKDYVSLLGVTLRRY  414 (804)
Q Consensus       336 -~~~l~~yl~~I~GFFivE~~vl~tt~~l~s~~~vdelWe~~~~kl~~~l~~~l~~~~~~~~ll~iK~~i~lf~~tl~~y  414 (804)
                       +++|++|+.+|+||||||+||++|+++++|.++|+++|+++|+|+++.|+.++++|++|+++|++||+|+|++.||++|
T Consensus       330 ~l~~~~ty~~~i~Gffived~il~t~~~~~s~~~ve~lW~~~i~k~v~~L~~~~s~~~t~~~ll~lKd~i~L~~~tl~~y  409 (800)
T KOG2176|consen  330 SLEGYQTYFNQIAGFFIVEDHILRTTGGFLSYNEVEELWDTAISKLVATLSYQSSRCQTPNHLLKLKDLIVLLGATLENY  409 (800)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhHHHHHHHHHHHc
Confidence             7999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccCCHHHHhchhccccCCCCCCCC-CCCcccCCCCchH
Q 041288          415 GYPIDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIVP-AFPYVAPFSSTVP  493 (804)
Q Consensus       415 gy~v~~L~~~L~~l~d~Y~~lL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~~-~fP~~lPFS~~vP  493 (804)
                      ||+|+||+++|.++||+|+++|+++|++.|++++++|+|+||.|+++++|++++..||+++.+..+ |||+++|||+|||
T Consensus       410 g~~V~~l~~~l~~~rdky~e~LL~~~~~~f~e~l~~D~f~pm~V~~e~~Ye~~v~~fp~~~~e~~~~~Fp~~~pFS~mvP  489 (800)
T KOG2176|consen  410 GFNVEPLYDLLVEIRDKYHEVLLRKWRKIFREALEKDDFMPMVVKKEEEYEKNVLSFPFQNEELEPLPFPKTFPFSPMVP  489 (800)
T ss_pred             CCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhcccccccccHHHHhhhhhccccccccccCCCCcccCCCCcCCc
Confidence            999999999999999999999999999999999999999999999999999999999999888777 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC--cccHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHHHhHHHHHHHHHHHHH
Q 041288          494 DCCRIVRSFIEDSVSFMSYGG--HLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFR  571 (804)
Q Consensus       494 ~~c~~ir~fi~~~~~f~~~~~--~~~~d~~v~ks~d~lL~~~v~~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~~e~  571 (804)
                      +||+++|+||+.|++|+++++  .+++...+++.++.++.+.++  +...+..+++|++|++||++|+.+||.||++|..
T Consensus       490 ~~c~~~k~fi~~~v~fls~~~l~~~e~~~~~~~~~~l~l~rs~v--l~~~~~~~~~~lsq~~QI~~n~~~fe~a~~~f~~  567 (800)
T KOG2176|consen  490 DVCTQAKKFIYACVKFLSDLVLLETEVLNKIRKDTNLLLTRSLV--LSLTSSLPSLNLSQAMQIAANLDYFEIAADFFLE  567 (800)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhcccccHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999999999754  567778888889989988888  4444455778999999999999999999999999


Q ss_pred             HHHHHcCCCchhhhcccccccHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 041288          572 HAAQLSGIPLRMAERSRRQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTA  651 (804)
Q Consensus       572 ~~~~~~g~~~~~~~~~~~~~~f~~~r~~Ae~~I~~lv~~KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~  651 (804)
                      ++++.+|++.+..+++.++..|..+|+.||..++.++++||||||++ .+|||+.+++|++||+||.||+.||++||.++
T Consensus       568 ~a~~~~~~~~~~~e~~~~s~~l~~sr~~Ae~~l~~~i~~Kid~f~~l-~~~dW~t~e~pq~~~~~i~e~~~yLet~~~s~  646 (800)
T KOG2176|consen  568 FACHLNGIPNRDAERPSSSTKLLASRKLAETELIELIKLKIDDFLEL-IEYDWTTTEVPQGPSEYINEMLIYLETMFSSA  646 (800)
T ss_pred             HHHHccCCccccccccccchhhhhhhhhHHHHHHHHHhhhhHHHHHH-hhccccccccCCCccHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888999999999999999999999995 59999999999999999999999999999999


Q ss_pred             hhhCCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHH
Q 041288          652 QQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQL  731 (804)
Q Consensus       652 ~~~LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQl  731 (804)
                      +++||.++++++|+++|+||+++++++|+|+++|+||++||.||++||.|||+||++- |++|. ..+.+..+|.|+|||
T Consensus       647 ~q~LP~~v~~~v~~~~~~his~~iv~llldd~ik~is~~Ai~~fnlDv~~lEsfa~~~-p~~~~-~~~~~~~~fielrQl  724 (800)
T KOG2176|consen  647 LQILPYKVAQLVCLRELDHISTSIVGLLLDDSIKQISMGAITNFNLDVNYLESFAASP-PVPPN-QEGVLAKAFIELRQL  724 (800)
T ss_pred             HhhCcHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHccchhHHHHHHhccCC-CCCCc-ccchhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999994 77777 678899999999999


Q ss_pred             HHhhhcCCcccccchhhhcccCCCCChhhHHHHHHhhcCCCCCcccccCCCCCCCChhhhhHHHHHHHhhhCC
Q 041288          732 VNLLLSNHPENFLNPVIRERSYNALDHRKVVTISEKLRDPSDRLFGTFGSRGAKQNPKKKSLDALIKRLRDVS  804 (804)
Q Consensus       732 idLl~s~~~e~y~~~~~R~~kY~~v~~~~~~~lLeK~~~~~~~~f~~~~~~~~~~~~rkk~~~~v~k~l~~~~  804 (804)
                      +|||++++|++|++|++|+++|.||+|.+|+++|||+++.++++||.+.++..++.+++|++|+|+||||.++
T Consensus       725 inLL~~~~~e~y~~~~~r~rsY~rl~~~~a~t~lEK~~d~~d~~~~~~~~~~n~~~~k~k~id~~~krlk~~~  797 (800)
T KOG2176|consen  725 INLLLLSDWETYLNDYGRERSYNRLQPAKAATLLEKFKDSSDGINGLLCSRKNDRSAKKKLIDTVKKRLKEFF  797 (800)
T ss_pred             HHHHHhcCHHHhhCchhhhhhhhccCHHHHHHHHHHHhcccccCcchhcccccccchhhhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999988888887889999999999999874

>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known Back     alignment and domain information
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases Back     alignment and domain information
>PF15469 Sec5: Exocyst complex component Sec5 Back     alignment and domain information
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking Back     alignment and domain information
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex Back     alignment and domain information
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi Back     alignment and domain information
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known Back     alignment and domain information
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [] Back     alignment and domain information
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [] Back     alignment and domain information
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [] Back     alignment and domain information
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex Back     alignment and domain information
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism] Back     alignment and domain information
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains Back     alignment and domain information
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function [] Back     alignment and domain information
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query804
2a2f_X325 Crystal Structure Of Sec15 C-Terminal Domain Length 3e-14
>pdb|2A2F|X Chain X, Crystal Structure Of Sec15 C-Terminal Domain Length = 325 Back     alignment and structure 
Iteration: 1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 19/298 (6%)
Query: 418 IDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSD 477
           ++ L ++L   RD Y+E+LL        E L  ++F  M+++   EY   +  F   +  
Sbjct: 2   VNILWELLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQ 61
Query: 478 IVPA-FPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGGHL-----EFFDVVKKYLDRLLG 531
           +  A FP   PFS  VP+     + F+    + M +   L     E   +V+K  + LL 
Sbjct: 62  LENAPFPKKFPFSRMVPEVYHQAKEFM---YACMKFAEELTLSPNEVAAMVRKAANLLLT 118
Query: 532 EVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQF 591
                 L  +       ++Q +Q+  +   LE+A  F       ++       ERS  Q 
Sbjct: 119 RSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTN-----TERSVSQT 173
Query: 592 P---LTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLV 648
           P      AR  AE+ +   + +K+D F  L    +W+  EP    + ++ ++I YL++  
Sbjct: 174 PSAMFHVARQDAEKQVGLRICSKIDEFFEL-SAYDWLLVEPPGIASAFITDMISYLKSTF 232
Query: 649 STAQQILPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFA 706
            +    LP  + +   +    HI+E I   +Y + VK+ +  A+  I++D+   E FA
Sbjct: 233 DSFAFKLP-HIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFA 289

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query804
2a2f_X325 Exocyst complex component SEC15; all helical struc 1e-89
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Length = 325 Back     alignment and structure
 Score =  285 bits (729), Expect = 1e-89
 Identities = 74/329 (22%), Positives = 141/329 (42%), Gaps = 9/329 (2%)

Query: 418 IDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSD 477
           ++ L ++L   RD Y+E+LL        E L  ++F  M+++   EY   +  F   +  
Sbjct: 2   VNILWELLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQ 61

Query: 478 IVPA-FPYVAPFSSTVPDCCRIVRSFIEDSVSFMSYGG--HLEFFDVVKKYLDRLLGEVL 534
           +  A FP   PFS  VP+     + F+   + F         E   +V+K  + LL    
Sbjct: 62  LENAPFPKKFPFSRMVPEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRSF 121

Query: 535 DEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAAQLSGIPLRMAERSRRQFPLT 594
              L  +       ++Q +Q+  +   LE+A  F       ++     +++     F   
Sbjct: 122 SGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSVSQTPSAMF--H 179

Query: 595 KARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQI 654
            AR  AE+ +   + +K+D F  L    +W+  EP    + ++ ++I YL++   +    
Sbjct: 180 VARQDAEKQVGLRICSKIDEFFEL-SAYDWLLVEPPGIASAFITDMISYLKSTFDSFAFK 238

Query: 655 LPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFT 714
           LP  + +   +    HI+E I   +Y + VK+ +  A+  I++D+   E FA +      
Sbjct: 239 LP-HIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASEP--VP 295

Query: 715 DGDANQLKTALAESRQLVNLLLSNHPENF 743
                +L      +RQL++LL+  H  + 
Sbjct: 296 GLKEGELSKYFLRNRQLLDLLILEHHHHH 324
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query804
2a2f_X325 Exocyst complex component SEC15; all helical struc 100.0
3fhn_A706 Protein transport protein TIP20; TIP20P, vesicle t 98.04
3hr0_A263 COG4; conserved oligomeric golgi complex, intracel 97.82
2fji_1399 Exocyst complex component SEC6; exocytosis, tandem 97.28
2f6h_X419 Myosin-2, type V myosin; mysoin V, cargo binding, 95.96
3swh_A341 MUNC13-1, protein UNC-13 homolog A; alpha helical, 95.68
3mmi_A386 Myosin-4; globular tail, dilute domain, motor prot 94.32
3n1e_A141 Vacuolar protein sorting-associated protein 54; sp 92.23
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Back     alignment and structure
Probab=100.00  E-value=2.2e-80  Score=671.62  Aligned_cols=317  Identities=22%  Similarity=0.376  Sum_probs=282.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccCCHHHHhchhccccCCCCCCC-CCCCcccCCCCchHHHH
Q 041288          418 IDALLDVLSKHRDKYHELLLSDCRKQITEALAADKFEQMLMKKEYEYSMNVLSFQIQTSDIV-PAFPYVAPFSSTVPDCC  496 (804)
Q Consensus       418 v~~L~~~L~~l~d~Y~~lL~~~~~~~f~~il~~D~y~Pm~V~~~eey~~~v~~~~~~~~~~~-~~fP~~lPFS~~vP~~c  496 (804)
                      |++|+++|+++||+|+++|+++|+++|++++++|+|+||+|+|++||++++..||+++++.. ++||++||||+|||+||
T Consensus         2 V~~L~~~L~~l~d~Y~elLl~~~~~~f~~il~~D~y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c   81 (325)
T 2a2f_X            2 VNILWELLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVY   81 (325)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999766543 68999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc--CCcccHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHHHhHHHHHHHHHHHHHHHH
Q 041288          497 RIVRSFIEDSVSFMSY--GGHLEFFDVVKKYLDRLLGEVLDEALLKLINSSVHGVSQAMQVAANMAVLERACDFFFRHAA  574 (804)
Q Consensus       497 ~~ir~fi~~~~~f~~~--~~~~~~d~~v~ks~d~lL~~~v~~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~~e~~~~  574 (804)
                      ++||+||++||.|+++  ++++++|++|||++|+||+++||++|.++|++++++++|++||+||++|||.||++|+.+++
T Consensus        82 ~~ir~fi~~~~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~~L~~~i~~~~~~l~qi~Qi~iNl~~le~ac~~le~~l~  161 (325)
T 2a2f_X           82 HQAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVC  161 (325)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999995  45789999999999999999999999999999889999999999999999999999999999


Q ss_pred             HHcCCCchhhhcccccccHHHHHHHHHHHHHHHHHhHHHHHHhhhhhccccccCCCCCcchhHHHHHHHHHHHHHHHhhh
Q 041288          575 QLSGIPLRMAERSRRQFPLTKARDAAEEMLSGLLKNKVDGFMSLIENVNWMADEPLQNGNEYVNEVIIYLETLVSTAQQI  654 (804)
Q Consensus       575 ~~~g~~~~~~~~~~~~~~f~~~r~~Ae~~I~~lv~~KIdd~le~~~~yDW~~~~~~~~~s~yi~dli~fL~~~f~s~~~~  654 (804)
                      +.+|.+.+..  +.++..|+++|++||++|+++|++||||||+ +++|||+|++++++||+||.|++.||+++|++ +++
T Consensus       162 ~~~~~~~~~~--l~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl~-la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~~  237 (325)
T 2a2f_X          162 HMTNTERSVS--QTPSAMFHVARQDAEKQVGLRICSKIDEFFE-LSAYDWLLVEPPGIASAFITDMISYLKSTFDS-FAF  237 (325)
T ss_dssp             HHHTCCC---------CCSCCCTTHHHHHHHHHHHHHHHHHHT-TCCTTCC----CCSCCHHHHHHHHHHHHHHHT-TTT
T ss_pred             HHhCCCcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCCCCCCCccHHHHHHHHHHHHHHHH-HHc
Confidence            9999876643  5688899999999999999999999999998 79999999999999999999999999999995 799


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcccCCcccccCHHHHHhHHHHHHHHHHHhhhhCCCCCCCChhhHHHHHHHHHHHHHh
Q 041288          655 LPAQVLRRVLQDVLSHISETIVGAVYGDSVKRFNINAIMGIDVDIRLLESFADNLAPLFTDGDANQLKTALAESRQLVNL  734 (804)
Q Consensus       655 LP~~v~~~~~~~a~~his~~ll~~Ll~~~vk~in~~al~n~~~Dv~~le~fa~~~~~~~~~~~~~~L~~~F~ELrQlidL  734 (804)
                      ||+++++++||+||+|||++||++|++++||+||++||+||++||+|||+||+++ |++|+ +.++|+++|+|||||+||
T Consensus       238 LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~-~v~~l-~~~~L~~~F~eLrQli~L  315 (325)
T 2a2f_X          238 KLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASE-PVPGL-KEGELSKYFLRNRQLLDL  315 (325)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTC-SSSSC-CSSTTGGGGHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhC-CCCCc-ccchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998 87888 678999999999999999


Q ss_pred             hhcCCc
Q 041288          735 LLSNHP  740 (804)
Q Consensus       735 l~s~~~  740 (804)
                      |+++..
T Consensus       316 l~~~~~  321 (325)
T 2a2f_X          316 LILEHH  321 (325)
T ss_dssp             HHCC--
T ss_pred             HHhhhc
Confidence            999864
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens} Back     alignment and structure
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Back     alignment and structure
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Back     alignment and structure
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00